Psyllid ID: psy4832
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 770 | 2.2.26 [Sep-21-2011] | |||||||
| Q9VYN8 | 3004 | Teneurin-a OS=Drosophila | no | N/A | 0.602 | 0.154 | 0.665 | 0.0 | |
| O61307 | 2731 | Teneurin-m OS=Drosophila | no | N/A | 0.858 | 0.242 | 0.435 | 1e-165 | |
| Q9W7R3 | 2824 | Teneurin-4 OS=Danio rerio | yes | N/A | 0.838 | 0.228 | 0.367 | 1e-121 | |
| Q9W7R4 | 2590 | Teneurin-3 OS=Danio rerio | no | N/A | 0.820 | 0.244 | 0.366 | 1e-121 | |
| Q9NT68 | 2774 | Teneurin-2 OS=Homo sapien | yes | N/A | 0.754 | 0.209 | 0.375 | 1e-119 | |
| Q9WTS5 | 2764 | Teneurin-2 OS=Mus musculu | yes | N/A | 0.754 | 0.210 | 0.371 | 1e-118 | |
| Q9DER5 | 2802 | Teneurin-2 OS=Gallus gall | yes | N/A | 0.754 | 0.207 | 0.376 | 1e-118 | |
| Q9R1K2 | 2774 | Teneurin-2 OS=Rattus norv | yes | N/A | 0.754 | 0.209 | 0.371 | 1e-118 | |
| Q9P273 | 2699 | Teneurin-3 OS=Homo sapien | no | N/A | 0.742 | 0.211 | 0.382 | 1e-117 | |
| Q9WTS6 | 2715 | Teneurin-3 OS=Mus musculu | no | N/A | 0.744 | 0.211 | 0.378 | 1e-116 |
| >sp|Q9VYN8|TENA_DROME Teneurin-a OS=Drosophila melanogaster GN=Ten-a PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/484 (66%), Positives = 385/484 (79%), Gaps = 20/484 (4%)
Query: 1 SIQIPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADP 60
SIQIPGSDLHLTY+SS +SGYLS + + LT IP +L VHV VEIEG++H KTYEADP
Sbjct: 1069 SIQIPGSDLHLTYQSSQASGYLSIVRMRLTGETIPPTLTHVHVGVEIEGALHVKTYEADP 1128
Query: 61 NLTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIVWETQTCTLQGFDVDISDIGGW 120
+L H F WNKRNVY+QKVYGV +IS+GY+H +C S VW QT LQG+DVDISDIGGW
Sbjct: 1129 SLVHTFAWNKRNVYRQKVYGVTVARISVGYQHSTCQSPVWIAQTAKLQGYDVDISDIGGW 1188
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKD-CDGVARDARL 179
LD+HHHYNFHEGILQKGDGS+LH+K E+PRTV VVMGTGLQRPL C D C+GVA+DA+L
Sbjct: 1189 GLDIHHHYNFHEGILQKGDGSTLHMK-EYPRTVKVVMGTGLQRPLTCPDYCNGVAKDAKL 1247
Query: 180 LTPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYIS 239
LTP+AL +GPDGSLYVGDFNLVRR+TP+G V+T+LQLSATQVSYQYYLA+SPADGHLYIS
Sbjct: 1248 LTPIALATGPDGSLYVGDFNLVRRITPDGKVYTILQLSATQVSYQYYLAVSPADGHLYIS 1307
Query: 240 DAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI 299
D E+HQILR++ LE V DPSIN + VGSG+RCIPGDE NCGD GPAL A+LSHPKGLAI
Sbjct: 1308 DPERHQILRLVRLEKVKDPSINSDPVVGSGQRCIPGDEGNCGDGGPALLARLSHPKGLAI 1367
Query: 300 KADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLAL 359
AD+TM+IADGTNIR V P+G+IHTLIGHH HHN WSP C + A+ AQLQWPTGLAL
Sbjct: 1368 AADRTMYIADGTNIRAVDPKGVIHTLIGHHGHHNHWSPAPCSGTLMANQAQLQWPTGLAL 1427
Query: 360 SPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDS 419
SPLD SLHFIDDR++ +LT+D+K+++VAG PLHC G +D R +KT V
Sbjct: 1428 SPLDGSLHFIDDRLVLRLTSDMKIRVVAGTPLHCSNGGQDGR-----VNKTGADNV---- 1478
Query: 420 VRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNT 479
LG++ A+AFSP G+LYIAD D+R+VN++RV+D+ G M FAG+ + T
Sbjct: 1479 -------LGTVLAMAFSPFGNLYIADSDSRRVNSIRVVDTAGNMRYFAGK--QEGTGSQT 1529
Query: 480 TNCA 483
+CA
Sbjct: 1530 CDCA 1533
|
Involved in neural development, regulating the establishment of proper connectivity within the nervous system. Acts as a homophilic and heterophilic synaptic cell adhesion molecule that drives synapse assembly. Promotes bi-directional trans-synaptic signaling with ten-m to organize neuromuscular synapses. Drosophila melanogaster (taxid: 7227) |
| >sp|O61307|TENM_DROME Teneurin-m OS=Drosophila melanogaster GN=Ten-m PE=1 SV=2 | Back alignment and function description |
|---|
Score = 581 bits (1497), Expect = e-165, Method: Compositional matrix adjust.
Identities = 306/703 (43%), Positives = 451/703 (64%), Gaps = 42/703 (5%)
Query: 1 SIQIPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADP 60
S+QIPG+ L+L Y SS ++GYLS+I + LT + IP SL +H+R+ IEG + + +EADP
Sbjct: 996 SLQIPGTGLNLVYHSSRAAGYLSTIKLQLTPDVIPTSLHLIHLRITIEGILFERIFEADP 1055
Query: 61 NLTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIVWETQTCTLQGFDVDISDIGGW 120
+ + WN+ N+Y+Q+VYGV + +GY++ C+ IVW+ QT L G D+ IS++GGW
Sbjct: 1056 GIKFTYAWNRLNIYRQRVYGVTTAVVKVGYQYTDCTDIVWDIQTTKLSGHDMSISEVGGW 1115
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
+LD+HH YNFHEGILQKGDGS+++L+++ PR + MG G QRPL C DCDG A RLL
Sbjct: 1116 NLDIHHRYNFHEGILQKGDGSNIYLRNK-PRIILTTMGDGHQRPLECPDCDGQATKQRLL 1174
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISD 240
PVAL + PDGSL+VGDFN +RR+ +G++ TV++L+AT+VSY+Y++ALSP DG LY+SD
Sbjct: 1175 APVALAAAPDGSLFVGDFNYIRRIMTDGSIRTVVKLNATRVSYRYHMALSPLDGTLYVSD 1234
Query: 241 AEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300
E HQI+RV + P +NWE VGSGERC+PGDE +CGD A AKL++PKG+AI
Sbjct: 1235 PESHQIIRVRDTNDYSQPELNWEAVVGSGERCLPGDEAHCGDGALAKDAKLAYPKGIAIS 1294
Query: 301 ADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS 360
+D ++ ADGTNIR+V +GI+ TLIG+H H + W P C + L+WPT LA+S
Sbjct: 1295 SDNILYFADGTNIRMVDRDGIVSTLIGNHMHKSHWKPIPCEGTLKLEEMHLRWPTELAVS 1354
Query: 361 PLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420
P+D++LH IDD +I ++T D +V++++G PLHC T ST D +
Sbjct: 1355 PMDNTLHIIDDHMILRMTPDGRVRVISGRPLHCATA----------------STAYDTDL 1398
Query: 421 RASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTT 480
A++ L ++AF P G+LY+A+ D++++N +RVI + GR+ FAG K NC
Sbjct: 1399 -ATHATLVMPQSIAFGPLGELYVAESDSQRINRVRVIGTDGRIAPFAG--AESKCNCLER 1455
Query: 481 NCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYLPTHDEHGEF 540
C FE E L ++A+F +I+AL+V+PD V++ADQ + I ++ +P E+
Sbjct: 1456 GCDCFE---AEHYLATSAKFNTIAALAVTPDSHVHIADQANYRIRSVMSSIPEASPSREY 1512
Query: 541 KIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTITDASGNKINFLR 600
+I P EIY+FNR+GQH++TR++ +G+ Y F Y+ NTS GKLST+TDA+GNK+ LR
Sbjct: 1513 EIYAPDMQEIYIFNRFGQHVSTRNILTGETTYVFTYNVNTSNGKLSTVTDAAGNKVFLLR 1572
Query: 601 DY-SNVAQLQWPTGLALSPLDDSLHFIDDRVIFKLTNDLKIRALKKGRFDVTYDY-DHLD 658
DY S V ++ G L +++ +L+ ++VTY+Y
Sbjct: 1573 DYTSQVNSIENTKGQKC-----RLRMTRMKMLHELST--------PDNYNVTYEYHGPTG 1619
Query: 659 RLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLISLVYD 701
L + D+ G + YN E+ ++T +P G++I L +D
Sbjct: 1620 LLRTKLDSTGR--SYVYNYDEF-GRLTSAVTPT-GRVIELSFD 1658
|
Involved in neural development, regulating the establishment of proper connectivity within the nervous system. Acts as a homophilic and heterophilic synaptic cell adhesion molecule that drives synapse assembly. Promotes bi-directional trans-synaptic signaling with ten-a to organize neuromuscular synapses. Function in olfactory synaptic partner matching; promotes homophilic cell adhesion between pre-synaptic olfactory receptor neurons (ORN) axons and post-synaptic projection neurons (PN) dendrites partner in the developing antennal lobe to form stable connections. Also required for peripheral axon growth cone guidance and target recognition of motor neurons. Drosophila melanogaster (taxid: 7227) |
| >sp|Q9W7R3|TEN4_DANRE Teneurin-4 OS=Danio rerio GN=tenm4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust.
Identities = 253/689 (36%), Positives = 392/689 (56%), Gaps = 43/689 (6%)
Query: 2 IQIPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADPN 61
++IPG+D+ L Y SS +SGY S + I LTH+ IP SL+KVH+ V +EG + K + A PN
Sbjct: 1114 VRIPGTDMRLGYLSSRTSGYKSLLRITLTHSTIPFSLMKVHLMVAVEGRLFRKWFSAAPN 1173
Query: 62 LTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSS-IVWETQTCTLQGFDVDISDIGGW 120
L++ F W+K +VY QKVYG+++ +S+G+E+ESC I+WE +T LQG++ S++GGW
Sbjct: 1174 LSYDFVWDKTDVYSQKVYGLSEAFVSVGFEYESCPDLILWEKRTAVLQGYETTASNLGGW 1233
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
S+D HH N GIL KG+G ++ + + P + +MG G +R + C C+G+A +LL
Sbjct: 1234 SVDKHHALNIQSGILHKGNGENIFISQQ-PPVIGSIMGNGRRRSISCPSCNGLADGNKLL 1292
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISD 240
PVAL G DGSLYVGDFN VRR+ GNV +VL+LS + +++YYLA SP G LY+SD
Sbjct: 1293 APVALACGSDGSLYVGDFNYVRRIFTTGNVTSVLELSNSP-AHKYYLATSPVSGWLYLSD 1351
Query: 241 AEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300
++ +V SL +V D + N E+ G+G++C+P DET CGD G A+ A L++P+G+ +
Sbjct: 1352 TSSRKVFKVKSLYAVKDVAKNLELVAGTGDQCLPYDETRCGDGGKAVEATLTNPRGITVD 1411
Query: 301 ADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS 360
+F DGT IR + GII TL+G + + P +C S +L+WPT LA+S
Sbjct: 1412 KYGVIFFVDGTMIRRIDQNGIISTLLGFNDLTSA-RPLSCDSVMDISQVRLEWPTDLAVS 1470
Query: 361 PLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420
P+D+SL+ +D+ V+ +++ + +V+IVAG P+HC+ D V ++
Sbjct: 1471 PMDNSLYVLDNNVVLQISENHQVRIVAGRPMHCQVPGLD------------HFLVSKIAI 1518
Query: 421 RASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTT 480
A+ L S ALA S G LYIA+ D +K+N +R + + G + AG C+
Sbjct: 1519 HAT---LESANALAVSHNGLLYIAESDEKKINRVRQVSTNGEISLLAGA----PSGCDCK 1571
Query: 481 NCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYLPTHDEHGEF 540
N A + S + A+ + S+L+VSPDG + +AD G++ I ++ + +
Sbjct: 1572 NDANCDCYSGDDGYAKDAKLNAPSSLAVSPDGELFIADLGNIRIRYVRRNKAFLNPLNMY 1631
Query: 541 KIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTITDASGNKINFLR 600
+I P +E+Y+F+ H+ T+ +T+G Y+F YS G LS+ITD + N+++ R
Sbjct: 1632 EISSPIDDELYLFDVNASHVFTQSLTTGDYLYNFTYSGE---GDLSSITDKNKNRVSIRR 1688
Query: 601 DYSNVAQLQWPTGLAL---SPLDDSLHFIDDRVIFKLTNDLKIRALKKGRFDVTYDYDHL 657
D TGL L P + F N LK A + V +
Sbjct: 1689 D---------STGLPLWLMGPDGQTFWF-----TMGTNNALKSVAAQGQEIAVMTYHGSS 1734
Query: 658 DRLSVRKDNYGNITQFFYNNHEYPTQVTH 686
L+ + + G T + Y+N+ T VT+
Sbjct: 1735 GLLATKSNEDGWSTFYEYDNYGRLTNVTY 1763
|
May function as a cellular signal transducer. Danio rerio (taxid: 7955) |
| >sp|Q9W7R4|TEN3_DANRE Teneurin-3 OS=Danio rerio GN=tenm3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 435 bits (1119), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/669 (36%), Positives = 374/669 (55%), Gaps = 37/669 (5%)
Query: 4 IPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADPNLT 63
IPGSDL+L Y SS ++GY + + +T IP +L+KVH+ V + G + K + A+PNL+
Sbjct: 887 IPGSDLNLMYLSSRAAGYRPVLKVTMTQATIPFNLMKVHLMVAVVGRLFQKWFPAEPNLS 946
Query: 64 HVFTWNKRNVYKQKVYGVAQCKISIGYEHESC-SSIVWETQTCTLQGFDVDISDIGGWSL 122
+ F W+K + Y Q+VYG+++ +S+G+E+ESC I+WE +T LQG+++D S++GGW+L
Sbjct: 947 YTFIWDKTDAYNQRVYGLSEAVVSVGFEYESCLDLILWEKRTAILQGYELDASNMGGWTL 1006
Query: 123 DVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTP 182
D HH + GIL KG+G ++ + + P +S +MG G +R + C C+G A +LL P
Sbjct: 1007 DKHHVLDVQNGILYKGNGENVFVSQQ-PPVISTIMGNGRRRSISCPSCNGQADGNKLLAP 1065
Query: 183 VALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAE 242
VAL G DGSL+VGDFN +RR+ P GNV +V++LS ++ YYLA P G LY+SD
Sbjct: 1066 VALACGSDGSLFVGDFNYIRRIFPSGNVTSVMELS-NNPAHGYYLATDPMTGQLYVSDTN 1124
Query: 243 KHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKAD 302
+I R +L + N EV G+GE+C+P DE CGD G A A L PKG+A+ +
Sbjct: 1125 SRRIFRPKALTGTKELLQNAEVVAGTGEQCLPFDEARCGDGGKATEALLLGPKGIAVDKN 1184
Query: 303 KTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPL 362
++ DGT IR V GII TL+G + + P C S +L+WPT LA++P+
Sbjct: 1185 GFIYFVDGTMIRKVDRNGIISTLLGSNDLTSA-RPLTCDNSMHIGQVRLEWPTDLAINPM 1243
Query: 363 DDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRA 422
D+S++ +D+ V+ ++T + +V+IVAG P+HC+ + K RA
Sbjct: 1244 DNSIYVLDNNVVLQITENRQVRIVAGRPMHCQVPGIEYTMGK----------------RA 1287
Query: 423 SNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNC 482
L TA++ S +G LYIA+ D +K+N +R + + G + AG SD N NC
Sbjct: 1288 IQTTLEGATAISLSYSGVLYIAETDEKKINRIRQVSTDGEISHLAGA-PSDCDCKNDANC 1346
Query: 483 AEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYLPTHDEHGEFKI 542
++ AR + S+L VSPDG + VAD G++ I A++H P G F++
Sbjct: 1347 DCYQTGDG---YAKDARLNAPSSLVVSPDGTLYVADLGNIRIRAIRHNRPPQGSSGLFEV 1403
Query: 543 PYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTITDASGNKINFLRDY 602
PA+ E+YVF+ G H T + +G +Y+F YS ++ +TD+SGN + RD
Sbjct: 1404 ASPASQELYVFDSNGTHQYTMSLVTGDYKYNFSYSNEDD---VTAVTDSSGNTLRVRRDP 1460
Query: 603 SNVA--------QLQWPTGLALSPLDDSLHFIDDRVIFKLTNDLKIRALKKGRFDVT--Y 652
+ + Q+ W T L + V+F + + A K + T Y
Sbjct: 1461 NRMPVRIVAPDNQVIWLTIGTNGGLKTLTAQGQELVLFTYHGNSGLLATKSIQIGWTTFY 1520
Query: 653 DYDHLDRLS 661
DYD RL+
Sbjct: 1521 DYDSEGRLT 1529
|
May function as a cellular signal transducer. Danio rerio (taxid: 7955) |
| >sp|Q9NT68|TEN2_HUMAN Teneurin-2 OS=Homo sapiens GN=TENM2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/613 (37%), Positives = 357/613 (58%), Gaps = 32/613 (5%)
Query: 2 IQIPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADPN 61
I++PGS++ L Y SS ++GY S + I +T + +P +L++VH+ V +EG + K+++A PN
Sbjct: 1060 IELPGSNVKLRYLSSRTAGYKSLLKITMTQSTVPLNLIRVHLMVAVEGHLFQKSFQASPN 1119
Query: 62 LTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSS-IVWETQTCTLQGFDVDISDIGGW 120
L + F W+K + Y Q+VYG++ +S+G+E+E+C S I+WE +T LQGF++D S++GGW
Sbjct: 1120 LAYTFIWDKTDAYGQRVYGLSDAVVSVGFEYETCPSLILWEKRTALLQGFELDPSNLGGW 1179
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
SLD HH N GIL KG G + L + P ++ +MG G +R + C C+G+A +LL
Sbjct: 1180 SLDKHHILNVKSGILHKGTGENQFLTQQ-PAIITSIMGNGRRRSISCPSCNGLAEGNKLL 1238
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQV------SYQYYLALSPADG 234
PVAL G DGSLYVGDFN +RR+ P NV ++L+L + +++YYLA+ P G
Sbjct: 1239 APVALAVGIDGSLYVGDFNYIRRIFPSRNVTSILELRNKEFKHSNNPAHKYYLAVDPVSG 1298
Query: 235 HLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHP 294
LY+SD +I RV SL D + N EV G+GE+C+P DE CGD G A+ A L P
Sbjct: 1299 SLYVSDTNSRRIYRVKSLSGTKDLAGNSEVVAGTGEQCLPFDEARCGDGGKAIDATLMSP 1358
Query: 295 KGLAIKADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWP 354
+G+A+ + M+ D T IR V GII TL+G + + P +C S + +L+WP
Sbjct: 1359 RGIAVDKNGLMYFVDATMIRKVDQNGIISTLLGSNDLTAV-RPLSCDSSMDVAQVRLEWP 1417
Query: 355 TGLALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKST 414
T LA++P+D+SL+ +++ VI ++T + +V I+AG P+HC+ D K
Sbjct: 1418 TDLAVNPMDNSLYVLENNVILRITENHQVSIIAGRPMHCQVPGIDYSLSK---------- 1467
Query: 415 VQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDK 474
A + L S +A+A S TG LYI + D +K+N LR + + G + AG SD
Sbjct: 1468 ------LAIHSALESASAIAISHTGVLYITETDEKKINRLRQVTTNGEICLLAGA-ASDC 1520
Query: 475 KNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYLPTH 534
N NC + S + + A S S+L+V+PDG + +AD G++ I A+ P
Sbjct: 1521 DCKNDVNCNCY---SGDDAYATDAILNSPSSLAVAPDGTIYIADLGNIRIRAVSKNKPVL 1577
Query: 535 DEHGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTITDASGN 594
+ +++ P E+YVFN G H T + +G+ Y+F YS + ++ + D +GN
Sbjct: 1578 NAFNQYEAASPGEQELYVFNADGIHQYTVSLVTGEYLYNFTYSTDND---VTELIDNNGN 1634
Query: 595 KINFLRDYSNVAQ 607
+ RD S + +
Sbjct: 1635 SLKIRRDSSGMPR 1647
|
May function as a cellular signal transducer. Homo sapiens (taxid: 9606) |
| >sp|Q9WTS5|TEN2_MOUSE Teneurin-2 OS=Mus musculus GN=Tenm2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 228/613 (37%), Positives = 356/613 (58%), Gaps = 32/613 (5%)
Query: 2 IQIPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADPN 61
I++PG+++ L Y SS ++GY S + I +T + +P +L++VH+ V +EG + K+++A PN
Sbjct: 1050 IELPGTNVKLRYLSSRTAGYKSLLKITMTQSTVPLNLIRVHLMVAVEGHLFQKSFQASPN 1109
Query: 62 LTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSS-IVWETQTCTLQGFDVDISDIGGW 120
L + F W+K + Y Q+VYG++ +S+G+E+E+C S I+WE +T LQGF++D S++GGW
Sbjct: 1110 LAYTFIWDKTDAYGQRVYGLSDAVVSVGFEYETCPSLILWEKRTALLQGFELDPSNLGGW 1169
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
SLD HH N GIL KG G + L + P ++ +MG G +R + C C+G+A +LL
Sbjct: 1170 SLDKHHTLNVKSGILHKGTGENQFLTQQ-PAIITSIMGNGRRRSISCPSCNGLAEGNKLL 1228
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQV------SYQYYLALSPADG 234
PVAL G DGSL+VGDFN +RR+ P NV ++L+L + ++YYLA+ P G
Sbjct: 1229 APVALAVGIDGSLFVGDFNYIRRIFPSRNVTSILELRNKEFKHSNSPGHKYYLAVDPVTG 1288
Query: 235 HLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHP 294
LY+SD +I RV SL D + N EV G+GE+C+P DE CGD G A+ A L P
Sbjct: 1289 SLYVSDTNSRRIYRVKSLSGAKDLAGNSEVVAGTGEQCLPFDEARCGDGGKAVDATLMSP 1348
Query: 295 KGLAIKADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWP 354
+G+A+ + M+ D T IR V GII TL+G + + P +C S + +L+WP
Sbjct: 1349 RGIAVDKNGLMYFVDATMIRKVDQNGIISTLLGSNDLTAV-RPLSCDSSMDVAQVRLEWP 1407
Query: 355 TGLALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKST 414
T LA++P+D+SL+ +++ VI ++T + +V I+AG P+HC+ D K
Sbjct: 1408 TDLAVNPMDNSLYVLENNVILRITENHQVSIIAGRPMHCQVPGIDYSLSK---------- 1457
Query: 415 VQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDK 474
A + L S +A+A S TG LYI + D +K+N LR + + G + AG SD
Sbjct: 1458 ------LAIHSALESASAIAISHTGVLYITETDEKKINRLRQVTTNGEICLLAGA-ASDC 1510
Query: 475 KNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYLPTH 534
N NC + S + + A S S+L+V+PDG + +AD G++ I A+ P
Sbjct: 1511 DCKNDVNCICY---SGDDAYATDAILNSPSSLAVAPDGTIYIADLGNIRIRAVSKNKPVL 1567
Query: 535 DEHGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTITDASGN 594
+ +++ P E+YVFN G H T + +G+ Y+F YS + ++ + D +GN
Sbjct: 1568 NAFNQYEAASPGEQELYVFNADGIHQYTVSLVTGEYLYNFTYSADND---VTELIDNNGN 1624
Query: 595 KINFLRDYSNVAQ 607
+ RD S + +
Sbjct: 1625 SLKIRRDSSGMPR 1637
|
May function as a cellular signal transducer. Mus musculus (taxid: 10090) |
| >sp|Q9DER5|TEN2_CHICK Teneurin-2 OS=Gallus gallus GN=TENM2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 231/613 (37%), Positives = 356/613 (58%), Gaps = 32/613 (5%)
Query: 2 IQIPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADPN 61
I++PGS + L Y SS ++GY S + I +T + +P +L+KVH+ V +EG + K++ A PN
Sbjct: 1088 IEVPGSSIKLIYLSSRTAGYKSLLKIIMTQSLVPLNLIKVHLMVAVEGHLFQKSFLASPN 1147
Query: 62 LTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSS-IVWETQTCTLQGFDVDISDIGGW 120
L + F W+K + Y QKVYG++ +S+G+E+E+C S I+WE +T LQGF++D S++GGW
Sbjct: 1148 LAYTFIWDKTDAYGQKVYGLSDAVVSVGFEYETCPSLILWEKRTALLQGFELDPSNLGGW 1207
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
SLD HH N GIL KG+G + L + P ++ +MG G +R + C C+G+A +LL
Sbjct: 1208 SLDKHHVLNVKSGILHKGNGENQFLTQQ-PAVITSIMGNGRRRSISCPSCNGLAEGNKLL 1266
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQV------SYQYYLALSPADG 234
PVAL G DGSL+VGDFN +RR+ P NV ++L+L + +++YYLA+ P G
Sbjct: 1267 APVALAVGIDGSLFVGDFNYIRRIFPSRNVTSILELRNKEFKHSNNPAHKYYLAVDPVSG 1326
Query: 235 HLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHP 294
LY+SD +I +V SL D + N EV G+GE+C+P DE CGD G A+ A L P
Sbjct: 1327 SLYVSDTNSRRIYKVKSLTGTKDLAGNSEVVAGTGEQCLPFDEARCGDGGKAVDATLMSP 1386
Query: 295 KGLAIKADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWP 354
+G+A+ M+ D T IR V GII TL+G + + P +C S S +L+WP
Sbjct: 1387 RGIAVDKYGLMYFVDATMIRKVDQNGIISTLLGSNDLTAV-RPLSCDSSMDVSQVRLEWP 1445
Query: 355 TGLALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKST 414
T LA+ P+D+SL+ +++ VI ++T + +V I+AG P+HC+ D K
Sbjct: 1446 TDLAVDPMDNSLYVLENNVILRITENHQVSIIAGRPMHCQVPGIDYSLSK---------- 1495
Query: 415 VQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDK 474
A + L S +A+A S TG LYI++ D +K+N LR + + G + AG SD
Sbjct: 1496 ------LAIHSALESASAIAISHTGVLYISETDEKKINRLRQVTTNGEICLLAGA-ASDC 1548
Query: 475 KNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYLPTH 534
N NC + S + + A S S+L+V+PDG + +AD G++ I A+ P
Sbjct: 1549 DCKNDVNCNCY---SGDDGYATDAILNSPSSLAVAPDGTIYIADLGNIRIRAVSKNRPIL 1605
Query: 535 DEHGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTITDASGN 594
+ +++ P E+YVFN G H T + +G+ Y+F YS + ++ + D++GN
Sbjct: 1606 NSFNQYEAASPGEQELYVFNADGIHQYTLSLVTGEYLYNFTYSSDND---VTEVMDSNGN 1662
Query: 595 KINFLRDYSNVAQ 607
+ RD S + +
Sbjct: 1663 SLKVRRDASGMPR 1675
|
May function as a cellular signal transducer. Gallus gallus (taxid: 9031) |
| >sp|Q9R1K2|TEN2_RAT Teneurin-2 OS=Rattus norvegicus GN=Tenm2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 228/613 (37%), Positives = 356/613 (58%), Gaps = 32/613 (5%)
Query: 2 IQIPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADPN 61
I++PG+++ L Y SS ++GY S + I +T + +P +L++VH+ V +EG + K+++A PN
Sbjct: 1060 IELPGTNVKLRYLSSRTAGYKSLLKITMTQSTVPLNLIRVHLMVAVEGHLFQKSFQASPN 1119
Query: 62 LTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSS-IVWETQTCTLQGFDVDISDIGGW 120
L + F W+K + Y Q+VYG++ +S+G+E+E+C S I+WE +T LQGF++D S++GGW
Sbjct: 1120 LAYTFIWDKTDAYGQRVYGLSDAVVSVGFEYETCPSLILWEKRTALLQGFELDPSNLGGW 1179
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
SLD HH N GIL KG G + L + P ++ +MG G +R + C C+G+A +LL
Sbjct: 1180 SLDKHHTLNVKSGILLKGTGENQFLTQQ-PAIITSIMGNGRRRSISCPSCNGLAEGNKLL 1238
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQV------SYQYYLALSPADG 234
PVAL G DGSL+VGDFN +RR+ P NV ++L+L + ++YYLA+ P G
Sbjct: 1239 APVALAVGIDGSLFVGDFNYIRRIFPSRNVTSILELRNKEFKHSNSPGHKYYLAVDPVTG 1298
Query: 235 HLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHP 294
LY+SD +I RV SL D + N EV G+GE+C+P DE CGD G A+ A L P
Sbjct: 1299 SLYVSDTNSRRIYRVKSLSGAKDLAGNSEVVAGTGEQCLPFDEARCGDGGKAVDATLMSP 1358
Query: 295 KGLAIKADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWP 354
+G+A+ + M+ D T IR V GII TL+G + + P +C S + +L+WP
Sbjct: 1359 RGIAVDKNGLMYFVDATMIRKVDQNGIISTLLGSNDLTAV-RPLSCDSSMDVAQVRLEWP 1417
Query: 355 TGLALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKST 414
T LA++P+D+SL+ +++ VI ++T + +V I+AG P+HC+ D K
Sbjct: 1418 TDLAVNPMDNSLYVLENNVILRITENHQVSIIAGRPMHCQVPGIDYSLSK---------- 1467
Query: 415 VQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDK 474
A + L S +A+A S TG LYI + D +K+N LR + + G + AG SD
Sbjct: 1468 ------LAIHSALESASAIAISHTGVLYITETDEKKINRLRQVTTNGEICLLAGA-ASDC 1520
Query: 475 KNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYLPTH 534
N NC + S + + A S S+L+V+PDG + +AD G++ I A+ P
Sbjct: 1521 DCKNDVNCICY---SGDDAYATDAILNSPSSLAVAPDGTIYIADLGNIRIRAVSKNKPVL 1577
Query: 535 DEHGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTITDASGN 594
+ +++ P E+YVFN G H T + +G+ Y+F YS + ++ + D +GN
Sbjct: 1578 NAFNQYEAASPGEQELYVFNADGIHQYTVSLVTGEYLYNFTYSADND---VTELIDNNGN 1634
Query: 595 KINFLRDYSNVAQ 607
+ RD S + +
Sbjct: 1635 SLKIRRDSSGMPR 1647
|
May function as a cellular signal transducer. Rattus norvegicus (taxid: 10116) |
| >sp|Q9P273|TEN3_HUMAN Teneurin-3 OS=Homo sapiens GN=TENM3 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 229/599 (38%), Positives = 350/599 (58%), Gaps = 27/599 (4%)
Query: 4 IPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADPNLT 63
IPG+DL L+Y SS ++GY S + I +T + IP +L+KVH+ V + G + K + A PNL
Sbjct: 997 IPGTDLKLSYLSSRAAGYKSVLKITMTQSIIPFNLMKVHLMVAVVGRLFQKWFPASPNLA 1056
Query: 64 HVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSI-VWETQTCTLQGFDVDISDIGGWSL 122
+ F W+K + Y QKVYG+++ +S+GYE+ESC + +WE +T LQG+++D S++GGW+L
Sbjct: 1057 YTFIWDKTDAYNQKVYGLSEAVVSVGYEYESCLDLTLWEKRTAILQGYELDASNMGGWTL 1116
Query: 123 DVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTP 182
D HH + GIL KG+G + + + P VS +MG G +R + C C+G A +LL P
Sbjct: 1117 DKHHVLDVQNGILYKGNGENQFISQQ-PPVVSSIMGNGRRRSISCPSCNGQADGNKLLAP 1175
Query: 183 VALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAE 242
VAL G DGSLYVGDFN VRR+ P GNV +VL+LS+ +++YYLA P G LY+SD
Sbjct: 1176 VALACGIDGSLYVGDFNYVRRIFPSGNVTSVLELSSNP-AHRYYLATDPVTGDLYVSDTN 1234
Query: 243 KHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKAD 302
+I R SL D + N EV G+GE+C+P DE CGD G A+ A L PKG+A+ +
Sbjct: 1235 TRRIYRPKSLTGAKDLTKNAEVVAGTGEQCLPFDEARCGDGGKAVEATLMSPKGMAVDKN 1294
Query: 303 KTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPL 362
++ DGT IR V GII TL+G + + P C S S +L+WPT LA++P+
Sbjct: 1295 GLIYFVDGTMIRKVDQNGIISTLLGSNDLTSA-RPLTCDTSMHISQVRLEWPTDLAINPM 1353
Query: 363 DDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRA 422
D+S++ +D+ V+ ++T + +V+I AG P+HC+ + K VQ
Sbjct: 1354 DNSIYVLDNNVVLQITENRQVRIAAGRPMHCQV--------PGVEYPVGKHAVQ------ 1399
Query: 423 SNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNC 482
L S TA+A S +G LYI + D +K+N +R + + G + AG S+ N NC
Sbjct: 1400 --TTLESATAIAVSYSGVLYITETDEKKINRIRQVTTDGEISLVAG-IPSECDCKNDANC 1456
Query: 483 AEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYLPTHDEHGEFKI 542
++ A+ ++ S+L+ SPDG + +AD G++ I A+ P + +++
Sbjct: 1457 DCYQSGDG---YAKDAKLSAPSSLAASPDGTLYIADLGNIRIRAVSKNKPLLNSMNFYEV 1513
Query: 543 PYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTITDASGNKINFLRD 601
P E+Y+F+ G H T + +G Y+F YS + ++ +TD++GN + RD
Sbjct: 1514 ASPTDQELYIFDINGTHQYTVSLVTGDYLYNFSYSNDND---ITAVTDSNGNTLRIRRD 1569
|
May function as a cellular signal transducer. Homo sapiens (taxid: 9606) |
| >sp|Q9WTS6|TEN3_MOUSE Teneurin-3 OS=Mus musculus GN=Tenm3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 229/605 (37%), Positives = 348/605 (57%), Gaps = 32/605 (5%)
Query: 4 IPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADPNLT 63
IPG+DL L+Y SS ++GY S + I +T IP +L+KVH+ V + G + K + A PNL
Sbjct: 1006 IPGTDLKLSYLSSRAAGYKSVLKITMTQAVIPFNLMKVHLMVAVVGRLFQKWFPASPNLA 1065
Query: 64 HVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSI-VWETQTCTLQGFDVDISDIGGWSL 122
+ F W+K + Y QKVYG+++ +S+GYE+ESC + +WE +T LQG+++D S++GGW+L
Sbjct: 1066 YTFIWDKTDAYNQKVYGLSEAVVSVGYEYESCLDLTLWEKRTAVLQGYELDASNMGGWTL 1125
Query: 123 DVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTP 182
D HH + GIL KG+G + + + P VS +MG G +R + C C+G A +LL P
Sbjct: 1126 DKHHVLDVQNGILYKGNGENQFISQQ-PPVVSSIMGNGRRRSISCPSCNGQADGNKLLAP 1184
Query: 183 VALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLS------ATQVSYQYYLALSPADGHL 236
VAL G DGSLYVGDFN VRR+ P GNV +VL+L ++ +++YYLA P G L
Sbjct: 1185 VALACGIDGSLYVGDFNYVRRIFPSGNVTSVLELRNKDFRHSSNPAHRYYLATDPVTGDL 1244
Query: 237 YISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKG 296
Y+SD +I R SL D + N EV G+GE+C+P DE CGD G A+ A L PKG
Sbjct: 1245 YVSDTNTRRIYRPKSLTGAKDLTKNAEVVAGTGEQCLPFDEARCGDGGKAVEATLMSPKG 1304
Query: 297 LAIKADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTG 356
+AI + ++ DGT IR V GII TL+G + + P C S S +L+WPT
Sbjct: 1305 MAIDKNGLIYFVDGTMIRKVDQNGIISTLLGSNDLTSA-RPLTCDTSMHISQVRLEWPTD 1363
Query: 357 LALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQ 416
LA++P+D+S++ +D+ V+ ++T + +V+I AG P+HC+ + K VQ
Sbjct: 1364 LAINPMDNSIYVLDNNVVLQITENRQVRIAAGRPMHCQV--------PGVEYPVGKHAVQ 1415
Query: 417 DDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKN 476
L S TA+A S +G LYI + D +K+N +R + + G + AG S+
Sbjct: 1416 --------TTLESATAIAVSYSGVLYITETDEKKINRIRQVTTDGEISLVAG-IPSECDC 1466
Query: 477 CNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYLPTHDE 536
N NC ++ A+ + S+L+ SPDG + +AD G++ I A+ P +
Sbjct: 1467 KNDANCDCYQSGDG---YAKDAKLNAPSSLAASPDGTLYIADLGNIRIRAVSKNKPLLNS 1523
Query: 537 HGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTITDASGNKI 596
+++ P E+Y+F+ G H T + +G Y+F YS + ++ +TD++GN +
Sbjct: 1524 MNFYEVASPTDQELYIFDINGTHQYTVSLVTGDYLYNFSYSNDND---VTAVTDSNGNTL 1580
Query: 597 NFLRD 601
RD
Sbjct: 1581 RIRRD 1585
|
May function as a cellular signal transducer. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 770 | ||||||
| 322794626 | 1900 | hypothetical protein SINV_12598 [Solenop | 0.884 | 0.358 | 0.614 | 0.0 | |
| 307202989 | 1949 | Teneurin-3 [Harpegnathos saltator] | 0.781 | 0.308 | 0.688 | 0.0 | |
| 332028723 | 2615 | Teneurin-3 [Acromyrmex echinatior] | 0.883 | 0.260 | 0.617 | 0.0 | |
| 383855590 | 2641 | PREDICTED: teneurin-3-like [Megachile ro | 0.880 | 0.256 | 0.612 | 0.0 | |
| 307167252 | 2600 | Teneurin-3 [Camponotus floridanus] | 0.781 | 0.231 | 0.685 | 0.0 | |
| 350397567 | 2628 | PREDICTED: teneurin-3-like [Bombus impat | 0.888 | 0.260 | 0.605 | 0.0 | |
| 340714986 | 2646 | PREDICTED: teneurin-3-like isoform 2 [Bo | 0.885 | 0.257 | 0.603 | 0.0 | |
| 340714984 | 2628 | PREDICTED: teneurin-3-like isoform 1 [Bo | 0.885 | 0.259 | 0.603 | 0.0 | |
| 328790868 | 2646 | PREDICTED: teneurin-3-like isoform 1 [Ap | 0.889 | 0.258 | 0.610 | 0.0 | |
| 157135459 | 1854 | odd Oz protein [Aedes aegypti] gi|108870 | 0.890 | 0.370 | 0.573 | 0.0 |
| >gi|322794626|gb|EFZ17634.1| hypothetical protein SINV_12598 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/729 (61%), Positives = 547/729 (75%), Gaps = 48/729 (6%)
Query: 1 SIQIPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADP 60
SI IPGS+LHL Y+SS ++GYLS++ + LT IP SL VHV VEIEGS+HTKTYEADP
Sbjct: 114 SIAIPGSNLHLMYQSSQAAGYLSTVRMQLTGPFIPKSLTHVHVHVEIEGSLHTKTYEADP 173
Query: 61 NLTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIVWETQTCTLQGFDVDISDIGGW 120
NLTH F WNKRNVYKQKVYGVAQ ++SIGY+H +C S++WETQT TLQGFDVDISDIGGW
Sbjct: 174 NLTHTFAWNKRNVYKQKVYGVAQARMSIGYQHSTCPSVIWETQTATLQGFDVDISDIGGW 233
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
LD+HHHYNFHEGILQKGDGS+LH K ++PRTV VVMGTGLQR LVC++CDG+A+DARLL
Sbjct: 234 GLDIHHHYNFHEGILQKGDGSTLHFK-QYPRTVKVVMGTGLQRSLVCQNCDGLAKDARLL 292
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISD 240
TPVALTSGPDGS+YVGDFNLVRR+TPEG V+TVL LSATQV+YQYYL +SPADGHLYISD
Sbjct: 293 TPVALTSGPDGSIYVGDFNLVRRITPEGKVYTVLILSATQVAYQYYLCISPADGHLYISD 352
Query: 241 AEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300
EKHQIL+ LSL+ V DPSIN E VGSGERCIPGDE +CGD GPA+ AKL+HPKG+AI
Sbjct: 353 PEKHQILKALSLDQVQDPSINIEPVVGSGERCIPGDEGHCGDEGPAIHAKLAHPKGIAIA 412
Query: 301 ADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS 360
ADKTM+IADGTNIR V P GIIHTL+GHH HHN WSP C + PA AQLQWPTGL LS
Sbjct: 413 ADKTMYIADGTNIRAVDPRGIIHTLVGHHGHHNHWSPAPCIGAIPAHQAQLQWPTGLTLS 472
Query: 361 PLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420
PLD SLHFIDDR++ KLT+DLKV++VAG PLHC + + D+ K S +
Sbjct: 473 PLDGSLHFIDDRLVLKLTSDLKVRVVAGTPLHCTSNANSNSNVNDELPKLNSSLTTNP-- 530
Query: 421 RASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQS-------- 472
+ S+ LGS+ A+ FSPTG+LYIAD D+ +VN++R++DS+G+M FAG+ Q
Sbjct: 531 KKSDEVLGSVLAVGFSPTGELYIADRDSHRVNSIRIVDSSGKMSHFAGQQQDRLRGQCDC 590
Query: 473 -----DKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILAL 527
K+ +T C + + +S ETLL+S A+FT+ISAL+VSPDGV++VADQGSLHILAL
Sbjct: 591 NNTTPSTKDLDTCTCID-DTSSTETLLSSNAKFTAISALAVSPDGVLHVADQGSLHILAL 649
Query: 528 QHYLPTHDEHGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLST 587
Q YLP HDE+GEF+IP+P +NEIYVFNRYGQHI+T+D+TSGK RYSFLYSKNTSFGKLST
Sbjct: 650 QPYLPNHDENGEFRIPFPPSNEIYVFNRYGQHISTKDLTSGKTRYSFLYSKNTSFGKLST 709
Query: 588 ITDASGNKINFLRDYSNVAQLQWPTGLALSPLDDSLHFIDDRVIFKLTNDLKIRAL---- 643
+TD++GNKI FLRDYS+V S+ D ++LKI A+
Sbjct: 710 VTDSAGNKIQFLRDYSSVV--------------SSIENTQDH-----KSELKISAVGFLE 750
Query: 644 ---KKGRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSP--RYGKLISL 698
++GR ++ YD L + G + Y N++ +VT + P KL+S
Sbjct: 751 KLSERGRAEIALAYDGSTGLLTSRS--GGDETYIY-NYDSLGRVTDVILPTGEKLKLLSD 807
Query: 699 VYDERGFLI 707
+ D+ G L+
Sbjct: 808 LSDDEGLLV 816
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307202989|gb|EFN82205.1| Teneurin-3 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 883 bits (2281), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/617 (68%), Positives = 502/617 (81%), Gaps = 15/617 (2%)
Query: 1 SIQIPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADP 60
SI IPGS+LHL Y+SS ++GYLS++ + LT IP SL VHV VEIEGS+HTKTYEADP
Sbjct: 166 SIAIPGSNLHLMYQSSQAAGYLSTVRMQLTGPFIPKSLTHVHVHVEIEGSLHTKTYEADP 225
Query: 61 NLTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIVWETQTCTLQGFDVDISDIGGW 120
NLTH F WNKRNVYKQKVYGVAQ +ISIGY+H +C S++WETQT TLQGFDVDISDIGGW
Sbjct: 226 NLTHTFAWNKRNVYKQKVYGVAQARISIGYQHSTCPSVIWETQTATLQGFDVDISDIGGW 285
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
LD+HHHYNFHEGILQKGDGS+LH K ++PRTV VVMGTGLQR LVC++CDG+A+DARLL
Sbjct: 286 GLDIHHHYNFHEGILQKGDGSTLHFK-QYPRTVKVVMGTGLQRSLVCQNCDGLAKDARLL 344
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISD 240
TPVALTSGPDGS+YVGDFNLVRR+TPEG ++TVL LSATQV+YQYYL +SPADGHLYISD
Sbjct: 345 TPVALTSGPDGSIYVGDFNLVRRITPEGKIYTVLILSATQVAYQYYLCISPADGHLYISD 404
Query: 241 AEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300
EKHQIL+ LSLE V DPSIN E VGSGERCIPGDE +CGD GPA+ AKL+HPKG+AI
Sbjct: 405 PEKHQILKALSLEQVQDPSINIESVVGSGERCIPGDEGHCGDEGPAIHAKLAHPKGIAIA 464
Query: 301 ADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS 360
ADKTM+IADGTNIR V P GIIHTL+GHH HHN WSP C + PA AQLQWPTGL LS
Sbjct: 465 ADKTMYIADGTNIRAVDPRGIIHTLVGHHGHHNHWSPAPCTGAIPAHQAQLQWPTGLTLS 524
Query: 361 PLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420
PLD SLHFIDDR++ KLT+DLKV++VAG PLHC + + + K S +
Sbjct: 525 PLDGSLHFIDDRLVLKLTSDLKVRVVAGTPLHCTSSANSNVNGNGELPKLNSSITVNS-- 582
Query: 421 RASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKK---NC 477
+ S+ LGS+ A+ FSPTG+LYIAD D+ +VN++R++DS+G+M FAG+ Q + C
Sbjct: 583 KKSDEVLGSVLAVGFSPTGELYIADRDSHRVNSIRIVDSSGKMSHFAGQQQERLRGQCEC 642
Query: 478 NTTN--------CAEFEK-NSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQ 528
N T CA + +S ETLL+S A+FT+ISAL+VSPDGV++VADQGSLHILALQ
Sbjct: 643 NNTTPSTKDMDACACTDDISSTETLLSSNAKFTAISALAVSPDGVLHVADQGSLHILALQ 702
Query: 529 HYLPTHDEHGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTI 588
YLP HDE GEF IP+P +NE+YVFNRYGQH +T+D+TSGK RYSFLYSKNTSFGKLST+
Sbjct: 703 PYLPNHDESGEFHIPFPPSNEVYVFNRYGQHTSTKDLTSGKTRYSFLYSKNTSFGKLSTV 762
Query: 589 TDASGNKINFLRDYSNV 605
TD++GNKI FLRDYS+V
Sbjct: 763 TDSAGNKIQFLRDYSSV 779
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332028723|gb|EGI68754.1| Teneurin-3 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 883 bits (2281), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/729 (61%), Positives = 548/729 (75%), Gaps = 49/729 (6%)
Query: 1 SIQIPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADP 60
SI IPGS+LHL Y+SS ++GYLS++ + LT IP SL VHV VEIEGS+HTKTYEADP
Sbjct: 846 SIAIPGSNLHLMYQSSQAAGYLSTVRMQLTGPFIPKSLTHVHVHVEIEGSLHTKTYEADP 905
Query: 61 NLTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIVWETQTCTLQGFDVDISDIGGW 120
NLTH F WNKRNVYKQKVYGVAQ +ISIGY+H +C S++WETQT TLQGFDVDISDIGGW
Sbjct: 906 NLTHTFAWNKRNVYKQKVYGVAQARISIGYQHSTCPSVIWETQTATLQGFDVDISDIGGW 965
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
LD+HHHYNFHEGILQKGDGS+LH K ++PRTV VVMGTGLQR LVC++CDG+A+DARLL
Sbjct: 966 GLDIHHHYNFHEGILQKGDGSTLHFK-QYPRTVKVVMGTGLQRSLVCQNCDGLAKDARLL 1024
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISD 240
TPVAL SGPDGS+YVGDFNLVRR+TPEG V+TVL LSATQV+YQYYL +SPADGHLYISD
Sbjct: 1025 TPVALASGPDGSIYVGDFNLVRRITPEGKVYTVLILSATQVAYQYYLCISPADGHLYISD 1084
Query: 241 AEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300
EKHQIL+ LSLE V DPSIN E VGSGERCIPGDE +CGD GPA+ AKL+HPKG+AI
Sbjct: 1085 PEKHQILKALSLEQVQDPSINIEPVVGSGERCIPGDEGHCGDEGPAIHAKLAHPKGIAIA 1144
Query: 301 ADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS 360
ADKTM+IADGTNIR V P GIIHTL+GHH HHN WSP C + PA AQLQWPTGL LS
Sbjct: 1145 ADKTMYIADGTNIRAVDPRGIIHTLVGHHGHHNHWSPAPCIGAIPAHQAQLQWPTGLTLS 1204
Query: 361 PLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420
PLD SLHFIDDR++ KLT+DLKV++VAG PLHC T + + + D+ K S + +
Sbjct: 1205 PLDGSLHFIDDRLVLKLTSDLKVRVVAGTPLHC-TSNANNNNGNDELPKLNSSLTTN--L 1261
Query: 421 RASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQS-------- 472
+ S+ LGS+ A+ FSPTG+LYIAD D+ +VN++R++DS+G+M FAG+ Q
Sbjct: 1262 KKSDEVLGSVLAVGFSPTGELYIADRDSHRVNSIRIVDSSGKMSHFAGQQQERLRGQCEC 1321
Query: 473 -----DKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILAL 527
K+ +T C + + +S ETLL+S A+FT+ISAL+VSPDGV++VADQGSLHILAL
Sbjct: 1322 NNTTPSTKDLDTCTCTD-DTSSTETLLSSNAKFTAISALAVSPDGVLHVADQGSLHILAL 1380
Query: 528 QHYLPTHDEHGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLST 587
Q YLP HDE+GEF+IP+P +NEIYVFNRYGQHI+T+D+TSGK RYSFLYSKNTSFGKLST
Sbjct: 1381 QPYLPNHDENGEFRIPFPPSNEIYVFNRYGQHISTKDLTSGKTRYSFLYSKNTSFGKLST 1440
Query: 588 ITDASGNKINFLRDYSNVAQLQWPTGLALSPLDDSLHFIDDRVIFKLTNDLKIRAL---- 643
+TD++GNKI FLRDYS+V S+ D ++LKI A+
Sbjct: 1441 VTDSAGNKIQFLRDYSSVV--------------SSIENTQDH-----KSELKISAVGFLE 1481
Query: 644 ---KKGRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSP--RYGKLISL 698
++GR ++ YD L + G + Y N++ +VT + P KL+S
Sbjct: 1482 KLSERGRAEIALGYDGSTGLLTSRS--GGDETYIY-NYDSLGRVTDVILPTGEKLKLLSD 1538
Query: 699 VYDERGFLI 707
+ D G L+
Sbjct: 1539 LSDNEGLLV 1547
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383855590|ref|XP_003703293.1| PREDICTED: teneurin-3-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 879 bits (2272), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/728 (61%), Positives = 544/728 (74%), Gaps = 50/728 (6%)
Query: 1 SIQIPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADP 60
SI IPGS+LHL Y+SS ++GYLS++ + LT IP SL VHV VEIEGS+HTKTYEADP
Sbjct: 865 SIAIPGSNLHLMYQSSQAAGYLSTVRMQLTGPFIPKSLTHVHVHVEIEGSLHTKTYEADP 924
Query: 61 NLTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIVWETQTCTLQGFDVDISDIGGW 120
NLTH F WNKRNVYKQKVYGVAQ +ISIGY+H +C S++WETQT TLQGFDVDISDIGGW
Sbjct: 925 NLTHTFAWNKRNVYKQKVYGVAQARISIGYQHSTCPSVIWETQTATLQGFDVDISDIGGW 984
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
LD+HHHYNFHEGILQKGDG++LH K ++PRTV VVMGTGLQR LVC+DCDG+A+DARLL
Sbjct: 985 GLDIHHHYNFHEGILQKGDGTTLHFK-QYPRTVKVVMGTGLQRNLVCQDCDGLAKDARLL 1043
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISD 240
TPVALTSGPDGS+YVGDFNLVRR+TPEGNV+TVL LSATQV+YQYYL +SPADGHLYISD
Sbjct: 1044 TPVALTSGPDGSIYVGDFNLVRRITPEGNVYTVLTLSATQVAYQYYLCVSPADGHLYISD 1103
Query: 241 AEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300
EKHQIL+ LSL++V PSIN E VGSGERCIPGDE++CGD GPA+ AKL+HPKG+AI
Sbjct: 1104 PEKHQILKALSLKNVQHPSINIEPVVGSGERCIPGDESHCGDEGPAIRAKLAHPKGIAIA 1163
Query: 301 ADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS 360
ADKTM+IADG NIR V P G IHTL+GHH HHN WSP C + PA AQLQWPTGL LS
Sbjct: 1164 ADKTMYIADGRNIRAVDPNGTIHTLVGHHGHHNHWSPAPCVGAIPAHQAQLQWPTGLTLS 1223
Query: 361 PLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420
PLD SLHFIDDR++ KLT+DLKV++VAG PLHC + + D S S + D V
Sbjct: 1224 PLDGSLHFIDDRLVLKLTSDLKVRVVAGTPLHCTSNGNNDNDLTKVNSSLTTSPKKSDEV 1283
Query: 421 RASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKK---NC 477
LGS+ A++FSPTG+LYIA+ D+ +VN+++++DS+G+M FAG+ Q + C
Sbjct: 1284 ------LGSVLAVSFSPTGELYIAESDSHRVNSIKIVDSSGKMSHFAGQQQERLRGQCEC 1337
Query: 478 NTT--------NCA-EFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQ 528
N T +CA + +S ETLL+S A+FT+ISAL+VSPDGV++VADQGSLHILALQ
Sbjct: 1338 NNTTPSTKDLESCACTDDTSSTETLLSSNAKFTAISALAVSPDGVLHVADQGSLHILALQ 1397
Query: 529 HYLPTHDEHGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTI 588
YLP HDE GEF IP+P +NE+YVFNRYGQHI+T+D+TSGK RYSFLYSKNTSFGKLST+
Sbjct: 1398 PYLPNHDESGEFHIPFPPSNEVYVFNRYGQHISTKDLTSGKTRYSFLYSKNTSFGKLSTV 1457
Query: 589 TDASGNKINFLRDYSNVAQLQWPTGLALSPLDDSLHFIDDRVIFKLTNDLKIRAL----- 643
TD++GNKI FLRDYS+V S+ D ++LKI A+
Sbjct: 1458 TDSAGNKIQFLRDYSSVV--------------SSIENTQDH-----KSELKISAVGFLEK 1498
Query: 644 --KKGRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSP--RYGKLISLV 699
++GR ++ YD L + G + + N++ +VT + P KL S +
Sbjct: 1499 LSERGRAEIALAYDGSTGLLTSRSGGG---ETYIYNYDGLGRVTDVILPTGEKLKLSSDL 1555
Query: 700 YDERGFLI 707
D+ G L+
Sbjct: 1556 SDDEGLLV 1563
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307167252|gb|EFN60940.1| Teneurin-3 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/617 (68%), Positives = 501/617 (81%), Gaps = 15/617 (2%)
Query: 1 SIQIPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADP 60
SI IPGS+LHL Y+SS ++GYLS++ + LT IP SL VHV VEIEGS+HTKTYEADP
Sbjct: 838 SIAIPGSNLHLMYQSSQAAGYLSTVRMQLTGPFIPKSLTHVHVHVEIEGSLHTKTYEADP 897
Query: 61 NLTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIVWETQTCTLQGFDVDISDIGGW 120
NLTH F WNKRNVYKQKVYGVAQ +ISIGY+H +C S++WETQT TLQGFDVDISDIGGW
Sbjct: 898 NLTHTFAWNKRNVYKQKVYGVAQARISIGYQHSTCPSVIWETQTATLQGFDVDISDIGGW 957
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
LD+HHHYNFHEGILQKGDGS+LH K ++PRTV VVMGTGLQR LVC++CDG+A+DARLL
Sbjct: 958 GLDIHHHYNFHEGILQKGDGSTLHFK-QYPRTVKVVMGTGLQRTLVCQNCDGLAKDARLL 1016
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISD 240
TPVAL SGPDGS+YVGDFNLVRR+TPEG V+TVL LSATQV+YQYYL +SPADGHLYISD
Sbjct: 1017 TPVALASGPDGSIYVGDFNLVRRITPEGKVYTVLILSATQVAYQYYLCISPADGHLYISD 1076
Query: 241 AEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300
EKHQIL+ LSLE V DPSIN E VG+GERCIPGDE +CGD GPA+ AKL+HPKG+AI
Sbjct: 1077 PEKHQILKALSLEQVQDPSINIEPVVGNGERCIPGDEGHCGDEGPAIHAKLAHPKGIAIA 1136
Query: 301 ADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS 360
ADKTM+IADGTNIR V P GIIHTL+GHH HHN WSP C + PA AQLQWPTGL LS
Sbjct: 1137 ADKTMYIADGTNIRAVDPRGIIHTLVGHHGHHNHWSPAPCIGAIPAHQAQLQWPTGLTLS 1196
Query: 361 PLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420
PLD SLHFIDDR++ KLT+DLKV++VAG PLHC + + + K S + +
Sbjct: 1197 PLDGSLHFIDDRLVLKLTSDLKVRVVAGTPLHCTSNANSNSNSNGELPKLNSSITTN--L 1254
Query: 421 RASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKK---NC 477
+ + LGS+ A+ FSPTG+LYIAD D+ +VN++R++DS+G+M FAG+ Q + C
Sbjct: 1255 KKPDEVLGSVLAVGFSPTGELYIADRDSHRVNSIRIVDSSGKMSHFAGQQQERLRGQCEC 1314
Query: 478 NTT--------NCA-EFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQ 528
N T CA + +S ETLL+S A+F +ISAL+VSPDG+++VADQGSLHILALQ
Sbjct: 1315 NNTTPSTKDMDTCACTDDTSSTETLLSSNAKFIAISALAVSPDGILHVADQGSLHILALQ 1374
Query: 529 HYLPTHDEHGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTI 588
YLP HDE GEF IP+P +NEIYVFNRYGQHI+T+D+TSGK RYSFLYSKNTSFGKLST+
Sbjct: 1375 PYLPNHDESGEFHIPFPPSNEIYVFNRYGQHISTKDLTSGKTRYSFLYSKNTSFGKLSTV 1434
Query: 589 TDASGNKINFLRDYSNV 605
TD++GNKI FLRDYS+V
Sbjct: 1435 TDSAGNKIQFLRDYSSV 1451
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350397567|ref|XP_003484916.1| PREDICTED: teneurin-3-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/727 (60%), Positives = 544/727 (74%), Gaps = 43/727 (5%)
Query: 1 SIQIPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADP 60
SI IPGS+LHL Y+SS ++GYLS++ + LT IP SL VHV VEIEGS+HTKTYEADP
Sbjct: 846 SIAIPGSNLHLMYQSSQAAGYLSTVRMQLTGPFIPKSLTHVHVHVEIEGSLHTKTYEADP 905
Query: 61 NLTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIVWETQTCTLQGFDVDISDIGGW 120
NLTH F WNKRNVYKQKVYGVAQ +ISIGY+H +C +++WETQT TLQGFDVDISDIGGW
Sbjct: 906 NLTHTFAWNKRNVYKQKVYGVAQARISIGYQHSTCPAVIWETQTATLQGFDVDISDIGGW 965
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
LD+HHHYNFHEGILQKGDG+++H K ++PRTV VVMGTGLQR LVC+DCDG+A+DARLL
Sbjct: 966 GLDIHHHYNFHEGILQKGDGTTMHFK-QYPRTVKVVMGTGLQRSLVCQDCDGLAKDARLL 1024
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISD 240
TPVALTSGPDGS+YVGDFNLVRR+TPEGNV+TVL LSATQV+Y+YYL +SPADGHLYISD
Sbjct: 1025 TPVALTSGPDGSIYVGDFNLVRRITPEGNVYTVLTLSATQVAYEYYLCVSPADGHLYISD 1084
Query: 241 AEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300
EKHQIL+ LSL++V P++N E VGSGERCIPGDE++CGD GPA+ AKL+HPKG+AI
Sbjct: 1085 PEKHQILKALSLKNVQHPNLNIEPVVGSGERCIPGDESHCGDEGPAIRAKLAHPKGIAIA 1144
Query: 301 ADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS 360
ADKTM+IADG NIR V P GIIHTL+GHH HHN WSP C + PA AQLQWPTGL LS
Sbjct: 1145 ADKTMYIADGRNIRAVDPHGIIHTLVGHHGHHNHWSPAPCVGAIPAHQAQLQWPTGLTLS 1204
Query: 361 PLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420
PLD SLHFIDDR++ KLT+DLKV++VAG PLHC + + D K K + S+
Sbjct: 1205 PLDGSLHFIDDRLVLKLTSDLKVRVVAGTPLHCTSNTNSNGNSNDSDLK-KVNVTTTTSI 1263
Query: 421 RASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKK---NC 477
+ S+ LGS+ A++FSPTG+LYIA+ D+ KVN+++++DS+G+M FAG+ Q + C
Sbjct: 1264 KKSDEVLGSVLAVSFSPTGELYIAESDSHKVNSIKIVDSSGKMSHFAGQQQERLRGQCEC 1323
Query: 478 NTT----------NCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILAL 527
N T +C + + +S ETLL+S A+FT+ISAL+VSPDGV++VADQGSLHILAL
Sbjct: 1324 NNTTPSTKDLESCSCTD-DTSSTETLLSSNAKFTAISALAVSPDGVLHVADQGSLHILAL 1382
Query: 528 QHYLPTHDEHGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLST 587
Q YLP HDE GEF IP+P +NE+YVFNRYGQHI+T+D+TSGK RYSFLYSKNTSFGKLST
Sbjct: 1383 QPYLPNHDESGEFHIPFPPSNEVYVFNRYGQHISTKDLTSGKTRYSFLYSKNTSFGKLST 1442
Query: 588 ITDASGNKINFLRDYSNVAQLQWPTGLALSPLDDSLHFIDDRVIFKLTNDLKIRAL---- 643
+ D++GNKI FLRDYS+V +S+ D ++LKI A+
Sbjct: 1443 VRDSAGNKIQFLRDYSSVV--------------NSIENTQDH-----KSELKISAVGFLE 1483
Query: 644 ---KKGRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLISLVY 700
++GR ++ YD L + G + Y+N T V + KL S +
Sbjct: 1484 KLSERGRAEIALAYDGSTGLLTSRSGGGETYIYNYDNLGRVTDVILPTGEKL-KLFSDLS 1542
Query: 701 DERGFLI 707
D+ G +
Sbjct: 1543 DDEGLSV 1549
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340714986|ref|XP_003396002.1| PREDICTED: teneurin-3-like isoform 2 [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/729 (60%), Positives = 547/729 (75%), Gaps = 47/729 (6%)
Query: 1 SIQIPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADP 60
SI IPGS+LHL Y+SS ++GYLS++ + LT IP SL VHV VEIEGS+HTKTYEADP
Sbjct: 864 SIAIPGSNLHLMYQSSQAAGYLSTVRMQLTGPFIPKSLTHVHVHVEIEGSLHTKTYEADP 923
Query: 61 NLTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIVWETQTCTLQGFDVDISDIGGW 120
NLTH F WNKRNVYKQKVYGVAQ +ISIGY+H +C +++WETQT TLQGFDVDISDIGGW
Sbjct: 924 NLTHTFAWNKRNVYKQKVYGVAQARISIGYQHSTCPAVIWETQTATLQGFDVDISDIGGW 983
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
LD+HHHYNFHEGILQKGDG+++H K ++PRTV VVMGTGLQR LVC+DCDG+A+DARLL
Sbjct: 984 GLDIHHHYNFHEGILQKGDGTTMHFK-QYPRTVKVVMGTGLQRSLVCQDCDGLAKDARLL 1042
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISD 240
TPVALTSGPDGS+YVGDFNLVRR+TPEGNV+TVL LSATQV+Y+YYL +SPADGHLYISD
Sbjct: 1043 TPVALTSGPDGSIYVGDFNLVRRITPEGNVYTVLTLSATQVAYEYYLCVSPADGHLYISD 1102
Query: 241 AEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300
EKHQIL+ LSL++V P++N E VGSGERCIPGDE++CGD GPA+ AKL+HPKG+AI
Sbjct: 1103 PEKHQILKALSLKNVQHPNLNIEPVVGSGERCIPGDESHCGDEGPAIRAKLAHPKGIAIA 1162
Query: 301 ADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS 360
ADKTM+IADG NIR V P GIIHTL+GHH HHN WSP C + PA AQLQWPTGL LS
Sbjct: 1163 ADKTMYIADGRNIRAVDPHGIIHTLVGHHGHHNHWSPAPCVGAIPAHQAQLQWPTGLTLS 1222
Query: 361 PLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420
PLD SLHFIDDR++ KLT+DLKV++VAG PLHC + + D K +T S+
Sbjct: 1223 PLDGSLHFIDDRLVLKLTSDLKVRVVAGTPLHCTSNTNSNGNNNDSDLKKVNATTT-TSL 1281
Query: 421 RASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKK---NC 477
+ S+ LGS+ A++FSPTG+LYIA+ D+ KVN+++++DS+G+M FAG+ Q + C
Sbjct: 1282 KKSDEVLGSVLAVSFSPTGELYIAESDSHKVNSIKIVDSSGKMSHFAGQQQERLRGQCEC 1341
Query: 478 NTT----------NCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILAL 527
N T +C + + +S ETLL+S A+FT+ISAL+VSPDGV++VADQGSLHILAL
Sbjct: 1342 NNTTPSTKDLESCSCTD-DTSSTETLLSSNAKFTAISALAVSPDGVLHVADQGSLHILAL 1400
Query: 528 QHYLPTHDEHGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLST 587
Q YLP HDE GEF IP+P +NE+YVFNRYGQHI+T+D+TSGK RYSFLYSKNTSFGKLST
Sbjct: 1401 QPYLPNHDESGEFHIPFPPSNEVYVFNRYGQHISTKDLTSGKTRYSFLYSKNTSFGKLST 1460
Query: 588 ITDASGNKINFLRDYSNVAQLQWPTGLALSPLDDSLHFIDDRVIFKLTNDLKIRAL---- 643
+ D++GNKI FLRDYS+V +S+ D ++LKI A+
Sbjct: 1461 VRDSAGNKIQFLRDYSSVV--------------NSIENTQDH-----KSELKISAVGFLE 1501
Query: 644 ---KKGRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSP--RYGKLISL 698
++GR ++ YD L + G + + N++ +VT + P KL S
Sbjct: 1502 KLSERGRAEIALAYDGSTGLLTSRSGGG---ETYIYNYDSLGRVTDVILPTGEKLKLFSD 1558
Query: 699 VYDERGFLI 707
+ D+ G +
Sbjct: 1559 LSDDEGLSV 1567
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340714984|ref|XP_003396001.1| PREDICTED: teneurin-3-like isoform 1 [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2247), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/729 (60%), Positives = 547/729 (75%), Gaps = 47/729 (6%)
Query: 1 SIQIPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADP 60
SI IPGS+LHL Y+SS ++GYLS++ + LT IP SL VHV VEIEGS+HTKTYEADP
Sbjct: 846 SIAIPGSNLHLMYQSSQAAGYLSTVRMQLTGPFIPKSLTHVHVHVEIEGSLHTKTYEADP 905
Query: 61 NLTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIVWETQTCTLQGFDVDISDIGGW 120
NLTH F WNKRNVYKQKVYGVAQ +ISIGY+H +C +++WETQT TLQGFDVDISDIGGW
Sbjct: 906 NLTHTFAWNKRNVYKQKVYGVAQARISIGYQHSTCPAVIWETQTATLQGFDVDISDIGGW 965
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
LD+HHHYNFHEGILQKGDG+++H K ++PRTV VVMGTGLQR LVC+DCDG+A+DARLL
Sbjct: 966 GLDIHHHYNFHEGILQKGDGTTMHFK-QYPRTVKVVMGTGLQRSLVCQDCDGLAKDARLL 1024
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISD 240
TPVALTSGPDGS+YVGDFNLVRR+TPEGNV+TVL LSATQV+Y+YYL +SPADGHLYISD
Sbjct: 1025 TPVALTSGPDGSIYVGDFNLVRRITPEGNVYTVLTLSATQVAYEYYLCVSPADGHLYISD 1084
Query: 241 AEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300
EKHQIL+ LSL++V P++N E VGSGERCIPGDE++CGD GPA+ AKL+HPKG+AI
Sbjct: 1085 PEKHQILKALSLKNVQHPNLNIEPVVGSGERCIPGDESHCGDEGPAIRAKLAHPKGIAIA 1144
Query: 301 ADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS 360
ADKTM+IADG NIR V P GIIHTL+GHH HHN WSP C + PA AQLQWPTGL LS
Sbjct: 1145 ADKTMYIADGRNIRAVDPHGIIHTLVGHHGHHNHWSPAPCVGAIPAHQAQLQWPTGLTLS 1204
Query: 361 PLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420
PLD SLHFIDDR++ KLT+DLKV++VAG PLHC + + D K +T S+
Sbjct: 1205 PLDGSLHFIDDRLVLKLTSDLKVRVVAGTPLHCTSNTNSNGNNNDSDLKKVNATTT-TSL 1263
Query: 421 RASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKK---NC 477
+ S+ LGS+ A++FSPTG+LYIA+ D+ KVN+++++DS+G+M FAG+ Q + C
Sbjct: 1264 KKSDEVLGSVLAVSFSPTGELYIAESDSHKVNSIKIVDSSGKMSHFAGQQQERLRGQCEC 1323
Query: 478 NTT----------NCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILAL 527
N T +C + + +S ETLL+S A+FT+ISAL+VSPDGV++VADQGSLHILAL
Sbjct: 1324 NNTTPSTKDLESCSCTD-DTSSTETLLSSNAKFTAISALAVSPDGVLHVADQGSLHILAL 1382
Query: 528 QHYLPTHDEHGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLST 587
Q YLP HDE GEF IP+P +NE+YVFNRYGQHI+T+D+TSGK RYSFLYSKNTSFGKLST
Sbjct: 1383 QPYLPNHDESGEFHIPFPPSNEVYVFNRYGQHISTKDLTSGKTRYSFLYSKNTSFGKLST 1442
Query: 588 ITDASGNKINFLRDYSNVAQLQWPTGLALSPLDDSLHFIDDRVIFKLTNDLKIRAL---- 643
+ D++GNKI FLRDYS+V +S+ D ++LKI A+
Sbjct: 1443 VRDSAGNKIQFLRDYSSVV--------------NSIENTQDH-----KSELKISAVGFLE 1483
Query: 644 ---KKGRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSP--RYGKLISL 698
++GR ++ YD L + G + + N++ +VT + P KL S
Sbjct: 1484 KLSERGRAEIALAYDGSTGLLTSRSGGG---ETYIYNYDSLGRVTDVILPTGEKLKLFSD 1540
Query: 699 VYDERGFLI 707
+ D+ G +
Sbjct: 1541 LSDDEGLSV 1549
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328790868|ref|XP_394629.4| PREDICTED: teneurin-3-like isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/726 (61%), Positives = 538/726 (74%), Gaps = 41/726 (5%)
Query: 1 SIQIPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADP 60
SI IPGS+LHL Y+SS ++GYLS++ + LT IP SL VHV VEIEGS+H KTYEADP
Sbjct: 864 SIAIPGSNLHLMYQSSQAAGYLSTVRMQLTGPFIPKSLTHVHVHVEIEGSLHAKTYEADP 923
Query: 61 NLTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIVWETQTCTLQGFDVDISDIGGW 120
NLTH F WNKRNVYKQKVYGVAQ +ISIGY+H +C +++WETQT LQGFDVDISDIGGW
Sbjct: 924 NLTHTFAWNKRNVYKQKVYGVAQARISIGYQHSTCPAVIWETQTAMLQGFDVDISDIGGW 983
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
LD+HHHYNFHEGILQKGDG++LH K ++PRTV VVMGTGLQR LVC+DCDG+A+D RLL
Sbjct: 984 GLDIHHHYNFHEGILQKGDGTTLHFK-QYPRTVKVVMGTGLQRSLVCQDCDGLAKDVRLL 1042
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISD 240
TPVALTSGPDGS+YVGDFNLVRR+TPEG V+TVL LSATQV+Y YYL +SPADGHLYISD
Sbjct: 1043 TPVALTSGPDGSIYVGDFNLVRRITPEGEVYTVLTLSATQVAYAYYLCVSPADGHLYISD 1102
Query: 241 AEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300
EKHQILR LSL+ V PSIN E VGSGERCIPGDE++CGD GPA+ AKL+HPKG+AI
Sbjct: 1103 PEKHQILRALSLKDVEHPSINIEPIVGSGERCIPGDESHCGDEGPAIRAKLAHPKGIAIA 1162
Query: 301 ADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS 360
ADKTM+IADG NIR V P GIIHTL+GHH HHN WSP C + PA AQLQWPTGL LS
Sbjct: 1163 ADKTMYIADGRNIRAVDPHGIIHTLVGHHGHHNHWSPAPCVGAIPAHQAQLQWPTGLTLS 1222
Query: 361 PLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420
PLD SLHFIDDR++ KLT+DLKV++VAG PLHC + + D K ST S
Sbjct: 1223 PLDGSLHFIDDRLVLKLTSDLKVRVVAGTPLHCTSNTNSNGNSNDSDLKKVNSTTT-TSP 1281
Query: 421 RASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKK---NC 477
+ S+ LGS+ A++FSPTG+LYIA+ D+ +VN+++++DS+G+M FAG+ Q + C
Sbjct: 1282 KKSDEVLGSVLAVSFSPTGELYIAESDSHRVNSIKIVDSSGKMSHFAGQQQERLRGQCEC 1341
Query: 478 NTT--------NCA-EFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQ 528
N T +CA + +S ETLL+S A+FT+ISAL+VSPDGV++VADQGSLHILALQ
Sbjct: 1342 NNTTPSSKDLESCACTDDTSSTETLLSSNAKFTAISALAVSPDGVLHVADQGSLHILALQ 1401
Query: 529 HYLPTHDEHGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTI 588
YLP HDE GEF IP+P +NE+YVFNRYGQHI+T+D+TSGK RYSFLYSKNTSFGKLST+
Sbjct: 1402 PYLPNHDESGEFHIPFPPSNEVYVFNRYGQHISTKDLTSGKIRYSFLYSKNTSFGKLSTV 1461
Query: 589 TDASGNKINFLRDYSNVAQLQWPTGLALSPLDDSLHFIDDRVIFKLTNDLKIRAL----- 643
TD++GNKI FLRDYS+V S+ D ++LKI A+
Sbjct: 1462 TDSAGNKIQFLRDYSSVV--------------SSIENTQDH-----KSELKISAVGFLEK 1502
Query: 644 --KKGRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLISLVYD 701
++GR ++ YD L + G + Y+N T V + KL S + D
Sbjct: 1503 LSERGRAEIALAYDGSTGLLTSRSGGGETYIYNYDNLGRVTDVILPTGEKL-KLFSDLSD 1561
Query: 702 ERGFLI 707
+ G L+
Sbjct: 1562 DEGLLV 1567
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157135459|ref|XP_001663451.1| odd Oz protein [Aedes aegypti] gi|108870228|gb|EAT34453.1| AAEL013308-PA, partial [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/731 (57%), Positives = 537/731 (73%), Gaps = 45/731 (6%)
Query: 1 SIQIPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADP 60
SIQIPGSDLHLTY++S +SGY S + + LTH++IP +L VH+ V+IEGS+H KTYEADP
Sbjct: 140 SIQIPGSDLHLTYQTSQASGYKSIVRMQLTHDKIPETLTHVHIGVQIEGSLHVKTYEADP 199
Query: 61 NLTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIVWETQTCTLQGFDVDISDIGGW 120
NL+++F WNKRNVYKQKVYG A +ISIGY+H +C I+WETQT LQGF+VDISDIGGW
Sbjct: 200 NLSYIFAWNKRNVYKQKVYGTAVARISIGYQHSTCKDIIWETQTAKLQGFEVDISDIGGW 259
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKD-CDGVARDARL 179
LD+HHHYNFHEGILQKGDG++LH+K E+PR V VMG G QR L CK+ C+G+++ ARL
Sbjct: 260 GLDIHHHYNFHEGILQKGDGATLHMK-EYPRIVRQVMGDGQQRQLSCKEYCNGLSKHARL 318
Query: 180 LTPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYIS 239
LTPVALT+GPDGSLYVGDFNLVRR+T G+VFTVL+L TQV+YQYYL++SPADGHLYIS
Sbjct: 319 LTPVALTAGPDGSLYVGDFNLVRRITTNGSVFTVLELETTQVAYQYYLSVSPADGHLYIS 378
Query: 240 DAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI 299
D EKH+ILRV+ LE+V DP+ N +V VGSG+RCIPGDE NCGD GPA A+LSHPKG+AI
Sbjct: 379 DPEKHKILRVVQLENVPDPAANSDVVVGSGQRCIPGDEENCGDGGPAKQARLSHPKGIAI 438
Query: 300 KADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLAL 359
ADKTM+IADGTNIR V P+GIIHTLIGHH HHN WSP C + A+ AQLQWPTGLAL
Sbjct: 439 AADKTMYIADGTNIRAVDPKGIIHTLIGHHGHHNHWSPAPCRGALLATRAQLQWPTGLAL 498
Query: 360 SPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDS 419
+PLD SLHFIDDR++ KLT D+K+K+VAG+PLHC + ++ +KT V
Sbjct: 499 NPLDGSLHFIDDRLVLKLTADMKIKVVAGVPLHCNS--------NEEHNKTNSDDV---- 546
Query: 420 VRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNT 479
LG++ A+AF+P GDLYIAD D+R++N++RV+DSTG M FAGR ++ K
Sbjct: 547 -------LGTVVAMAFAPFGDLYIADTDSRRINSIRVVDSTGYMRTFAGRSENGMKE--- 596
Query: 480 TNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYLPTHDEHGE 539
+ ET+L+S RF ++SA++++ DGV+N+ADQGSL I+ALQHYLP HD +GE
Sbjct: 597 ----DMSAMQSETILSSNVRFQAVSAIAIAQDGVINIADQGSLRIVALQHYLPQHDTNGE 652
Query: 540 FKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTITDASGNKINFL 599
F+IPY TNE+YVFNRYGQH+ T+D++SGK RYSFLYSKNTSFGKLST+TD+SGNKI FL
Sbjct: 653 FQIPYTPTNEMYVFNRYGQHVATKDLSSGKTRYSFLYSKNTSFGKLSTVTDSSGNKIQFL 712
Query: 600 RDYSNVAQLQWPTGLALSPLDDSLHFIDDRVIFKLTNDLKIRAL--KKGRFDVTYDYDHL 657
RDYSNV +S +++S D + K++++ + + +KG+ ++ +DYD
Sbjct: 713 RDYSNV----------VSSIENSQ---DHKSELKISSNGMLTKIIERKGKSELQFDYDSN 759
Query: 658 DRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLISLVYDERGFLIFAQMFRHKYY 717
+ L + + GN F Y EY I LI+ V E+ + + Q+ Y
Sbjct: 760 NGLLLSRT--GNGETFIYQYDEYGRVTKAILPSGEAFLITTVLGEKSYDLGVQINESIYS 817
Query: 718 IATDQCGTPVM 728
+ TP +
Sbjct: 818 HFAQEPATPTV 828
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 770 | ||||||
| FB|FBgn0259240 | 3378 | Ten-a "Tenascin accessory" [Dr | 0.598 | 0.136 | 0.652 | 1.3e-224 | |
| FB|FBgn0004449 | 2731 | Ten-m "Tenascin major" [Drosop | 0.511 | 0.144 | 0.498 | 1.8e-152 | |
| ZFIN|ZDB-GENE-990714-19 | 2778 | tenm3 "teneurin transmembrane | 0.503 | 0.139 | 0.410 | 3.7e-130 | |
| ZFIN|ZDB-GENE-060531-26 | 2571 | tenm1 "teneurin transmembrane | 0.750 | 0.224 | 0.350 | 5.9e-116 | |
| ZFIN|ZDB-GENE-990714-20 | 2849 | odz4 "odd Oz/ten-m homolog 4" | 0.601 | 0.162 | 0.397 | 2.4e-113 | |
| UNIPROTKB|F1NVT4 | 2293 | ODZ4 "Uncharacterized protein" | 0.601 | 0.201 | 0.387 | 5.8e-113 | |
| UNIPROTKB|E1BR60 | 2729 | ODZ1 "Uncharacterized protein" | 0.583 | 0.164 | 0.378 | 8.2e-112 | |
| UNIPROTKB|F1NVT3 | 2295 | ODZ4 "Uncharacterized protein" | 0.602 | 0.202 | 0.380 | 3e-111 | |
| UNIPROTKB|F1NVT5 | 2297 | ODZ4 "Uncharacterized protein" | 0.602 | 0.202 | 0.380 | 3e-111 | |
| UNIPROTKB|Q9UKZ4 | 2725 | TENM1 "Teneurin-1" [Homo sapie | 0.583 | 0.164 | 0.378 | 4.5e-111 |
| FB|FBgn0259240 Ten-a "Tenascin accessory" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1663 (590.5 bits), Expect = 1.3e-224, Sum P(3) = 1.3e-224
Identities = 313/480 (65%), Positives = 376/480 (78%)
Query: 1 SIQIPGSDLHLTYRXXXXXXXXXXXXXXXTHNEIPASLVKVHVRVEIEGSVHTKTYEADP 60
SIQIPGSDLHLTY+ T IP +L VHV VEIEG++H KTYEADP
Sbjct: 1443 SIQIPGSDLHLTYQSSQASGYLSIVRMRLTGETIPPTLTHVHVGVEIEGALHVKTYEADP 1502
Query: 61 NLTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIVWETQTCTLQGFDVDISDIGGW 120
+L H F WNKRNVY+QKVYGV +IS+GY+H +C S VW QT LQG+DVDISDIGGW
Sbjct: 1503 SLVHTFAWNKRNVYRQKVYGVTVARISVGYQHSTCQSPVWIAQTAKLQGYDVDISDIGGW 1562
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKD-CDGVARDARL 179
LD+HHHYNFHEGILQKGDGS+LH+K E+PRTV VVMGTGLQRPL C D C+GVA+DA+L
Sbjct: 1563 GLDIHHHYNFHEGILQKGDGSTLHMK-EYPRTVKVVMGTGLQRPLTCPDYCNGVAKDAKL 1621
Query: 180 LTPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYIS 239
LTP+AL +GPDGSLYVGDFNLVRR+TP+G V+T+LQLSATQVSYQYYLA+SPADGHLYIS
Sbjct: 1622 LTPIALATGPDGSLYVGDFNLVRRITPDGKVYTILQLSATQVSYQYYLAVSPADGHLYIS 1681
Query: 240 DAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI 299
D E+HQILR++ LE V DPSIN + VGSG+RCIPGDE NCGD GPAL A+LSHPKGLAI
Sbjct: 1682 DPERHQILRLVRLEKVKDPSINSDPVVGSGQRCIPGDEGNCGDGGPALLARLSHPKGLAI 1741
Query: 300 KADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLAL 359
AD+TM+IADGTNIR V P+G+IHTLIGHH HHN WSP C + A+ AQLQWPTGLAL
Sbjct: 1742 AADRTMYIADGTNIRAVDPKGVIHTLIGHHGHHNHWSPAPCSGTLMANQAQLQWPTGLAL 1801
Query: 360 SPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDS 419
SPLD SLHFIDDR++ +LT+D+K+++VAG PLHC G +D R +KT
Sbjct: 1802 SPLDGSLHFIDDRLVLRLTSDMKIRVVAGTPLHCSNGGQDGR-----VNKTG-------- 1848
Query: 420 VRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQ-SDKKNCN 478
A N+ LG++ A+AFSP G+LYIAD D+R+VN++RV+D+ G M FAG+ + + + C+
Sbjct: 1849 --ADNV-LGTVLAMAFSPFGNLYIADSDSRRVNSIRVVDTAGNMRYFAGKQEGTGSQTCD 1905
|
|
| FB|FBgn0004449 Ten-m "Tenascin major" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1142 (407.1 bits), Expect = 1.8e-152, Sum P(2) = 1.8e-152
Identities = 197/395 (49%), Positives = 276/395 (69%)
Query: 1 SIQIPGSDLHLTYRXXXXXXXXXXXXXXXTHNEIPASLVKVHVRVEIEGSVHTKTYEADP 60
S+QIPG+ L+L Y T + IP SL +H+R+ IEG + + +EADP
Sbjct: 996 SLQIPGTGLNLVYHSSRAAGYLSTIKLQLTPDVIPTSLHLIHLRITIEGILFERIFEADP 1055
Query: 61 NLTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIVWETQTCTLQGFDVDISDIGGW 120
+ + WN+ N+Y+Q+VYGV + +GY++ C+ IVW+ QT L G D+ IS++GGW
Sbjct: 1056 GIKFTYAWNRLNIYRQRVYGVTTAVVKVGYQYTDCTDIVWDIQTTKLSGHDMSISEVGGW 1115
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
+LD+HH YNFHEGILQKGDGS+++L+++ PR + MG G QRPL C DCDG A RLL
Sbjct: 1116 NLDIHHRYNFHEGILQKGDGSNIYLRNK-PRIILTTMGDGHQRPLECPDCDGQATKQRLL 1174
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISD 240
PVAL + PDGSL+VGDFN +RR+ +G++ TV++L+AT+VSY+Y++ALSP DG LY+SD
Sbjct: 1175 APVALAAAPDGSLFVGDFNYIRRIMTDGSIRTVVKLNATRVSYRYHMALSPLDGTLYVSD 1234
Query: 241 AEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300
E HQI+RV + P +NWE VGSGERC+PGDE +CGD A AKL++PKG+AI
Sbjct: 1235 PESHQIIRVRDTNDYSQPELNWEAVVGSGERCLPGDEAHCGDGALAKDAKLAYPKGIAIS 1294
Query: 301 ADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS 360
+D ++ ADGTNIR+V +GI+ TLIG+H H + W P C + L+WPT LA+S
Sbjct: 1295 SDNILYFADGTNIRMVDRDGIVSTLIGNHMHKSHWKPIPCEGTLKLEEMHLRWPTELAVS 1354
Query: 361 PLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRT 395
P+D++LH IDD +I ++T D +V++++G PLHC T
Sbjct: 1355 PMDNTLHIIDDHMILRMTPDGRVRVISGRPLHCAT 1389
|
|
| ZFIN|ZDB-GENE-990714-19 tenm3 "teneurin transmembrane protein 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 860 (307.8 bits), Expect = 3.7e-130, Sum P(3) = 3.7e-130
Identities = 161/392 (41%), Positives = 244/392 (62%)
Query: 4 IPGSDLHLTYRXXXXXXXXXXXXXXXTHNEIPASLVKVHVRVEIEGSVHTKTYEADPNLT 63
IPGSDL+L Y T IP +L+KVH+ V + G + K + A+PNL+
Sbjct: 1075 IPGSDLNLMYLSSRAAGYRPVLKVTMTQATIPFNLMKVHLMVAVVGRLFQKWFPAEPNLS 1134
Query: 64 HVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIV-WETQTCTLQGFDVDISDIGGWSL 122
+ F W+K + Y Q+VYG+++ +S+G+E+ESC ++ WE +T LQG+++D S++GGW+L
Sbjct: 1135 YTFIWDKTDAYNQRVYGLSEAVVSVGFEYESCLDLILWEKRTAILQGYELDASNMGGWTL 1194
Query: 123 DVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTP 182
D HH + GIL KG+G ++ + + P +S +MG G +R + C C+G A +LL P
Sbjct: 1195 DKHHVLDVQNGILYKGNGENVFVSQQ-PPVISTIMGNGRRRSISCPSCNGQADGNKLLAP 1253
Query: 183 VALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAE 242
VAL G DGSL+VGDFN +RR+ P GNV +V++LS +++YYLA P G LY+SD
Sbjct: 1254 VALACGSDGSLFVGDFNYIRRIFPSGNVTSVMELS-NNPAHRYYLATDPMTGQLYVSDTN 1312
Query: 243 KHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKAD 302
+I R +L + N EV G+GE+C+P DE CGD G A A L PKG+A+ +
Sbjct: 1313 SRRIFRPKALTGTKELLQNAEVVAGTGEQCLPFDEARCGDGGKATEALLLGPKGIAVDKN 1372
Query: 303 KTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPL 362
++ DGT IR V GII TL+G + + P C S +L+WPT LA++P+
Sbjct: 1373 GFIYFVDGTMIRKVDRNGIISTLLGSNDLTSA-RPLTCDNSMHIGQVRLEWPTDLAINPM 1431
Query: 363 DDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCR 394
D+S++ +D+ V+ ++T + +V+IVAG P+HC+
Sbjct: 1432 DNSIYVLDNNVVLQITENRQVRIVAGRPMHCQ 1463
|
|
| ZFIN|ZDB-GENE-060531-26 tenm1 "teneurin transmembrane protein 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 948 (338.8 bits), Expect = 5.9e-116, Sum P(2) = 5.9e-116
Identities = 215/614 (35%), Positives = 337/614 (54%)
Query: 2 IQIPGSDLHLTYRXXXXXXXXXXXXXXXTHNEIPASLVKVHVRVEIEGSVHTKTYEADPN 61
+ IP + L L+Y TH+ +P L KVH+ V ++G K++ A PN
Sbjct: 847 VVIPATVLKLSYLSSRAPGYRSLLRVVLTHSTLPLGLAKVHLSVAVQGRQLLKSFPAAPN 906
Query: 62 LTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIV-WETQTCTLQGFDVDISDIGGW 120
L +VF+WNK ++Y Q+V G+ Q +S+GYE+ESC +V WE + LQGF++ S++GGW
Sbjct: 907 LIYVFSWNKTDIYGQQVTGLVQAHVSVGYEYESCLDVVLWEKRVAQLQGFELMPSNLGGW 966
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
+L+ HH N GIL KG+G ++ + + P +S VMGTG+ R + C +C+G A + +L
Sbjct: 967 TLNHHHVLNLESGILHKGNGENVFISQQ-PLVISTVMGTGVVRAIPCPNCNGPAVEQKLF 1025
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQV------SYQYYLALSPADG 234
P+AL G DGS+YVGDFN +RR+ P G ++L+L + +++YYL++ P
Sbjct: 1026 APIALACGSDGSVYVGDFNYIRRILPNGFAISILELRNRDIRHSSSPAHKYYLSMDPVRE 1085
Query: 235 HLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHP 294
LY+SD ++ R+ +L D S N EV GSGE+C P CGD G A A LS+P
Sbjct: 1086 SLYLSDTSSGKLYRLKTLTEPKDLSRNVEVVAGSGEQCTPFHPNQCGDGGKATEAALSNP 1145
Query: 295 KGLAIKADKTMFI--ADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQ 352
+G I DK FI DG+ IR + +G+I T+IG + + P +C S +L+
Sbjct: 1146 RG-GIAVDKHGFIYFVDGSTIRKIDDKGVITTIIGSNGLTSS-QPISCDSRMDISQVRLE 1203
Query: 353 WPTGLALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKK 412
WPT LA+SPLD+SL+ +D+ ++ +++ +V++VAG P+HC + +
Sbjct: 1204 WPTDLAVSPLDNSLYVLDNNLVLQVSESQQVRVVAGRPIHC------------PMASIEP 1251
Query: 413 STVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQS 472
+ +VR+ L A+A S G LYIA+ D RK + ++ + + G M AG +
Sbjct: 1252 VLLGKTAVRSV---LEGAKAIAVSHQGTLYIAETDDRKHSRVQEVSTNGEMVIIAGA--T 1306
Query: 473 DKKNCNTT-NCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYL 531
+ +C NC F S + A+ S S+L+VSP+G + +AD G++ I L
Sbjct: 1307 SECDCKIDPNCECF---SGDGGYARDAKLKSPSSLAVSPNGSLCIADLGNVRIRRLTANH 1363
Query: 532 PTHDEHGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTITDA 591
P + G +++ A E+Y+F+ G H+ TR + +G +F Y T G LS+I +
Sbjct: 1364 PQLNPEGLYELASVADQELYLFSPNGTHLFTRSLVTGDYLLNFTY---TPEGHLSSIANR 1420
Query: 592 SGNKINFLRDYSNV 605
G RD + V
Sbjct: 1421 EGTIAQLRRDANGV 1434
|
|
| ZFIN|ZDB-GENE-990714-20 odz4 "odd Oz/ten-m homolog 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 946 (338.1 bits), Expect = 2.4e-113, Sum P(2) = 2.4e-113
Identities = 192/483 (39%), Positives = 291/483 (60%)
Query: 2 IQIPGSDLHLTYRXXXXXXXXXXXXXXXTHNEIPASLVKVHVRVEIEGSVHTKTYEADPN 61
++IPG+D+ L Y TH+ IP SL+KVH+ V +EG + K + A PN
Sbjct: 1139 VRIPGTDMRLGYLSSRTSGYKSLLRITLTHSTIPFSLMKVHLMVAVEGRLFRKWFSAAPN 1198
Query: 62 LTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIV-WETQTCTLQGFDVDISDIGGW 120
L++ F W+K +VY QKVYG+++ +S+G+E+ESC ++ WE +T LQG++ S++GGW
Sbjct: 1199 LSYDFVWDKTDVYSQKVYGLSEAFVSVGFEYESCPDLILWEKRTAVLQGYETTASNLGGW 1258
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
S+D HH N GIL KG+G ++ + + P + +MG G +R + C C+G+A +LL
Sbjct: 1259 SVDKHHALNIQSGILHKGNGENIFISQQ-PPVIGSIMGNGRRRSISCPSCNGLADGNKLL 1317
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISD 240
PVAL G DGSLYVGDFN VRR+ GNV +VL+LS + +++YYLA SP G LY+SD
Sbjct: 1318 APVALACGSDGSLYVGDFNYVRRIFTTGNVTSVLELSNSP-AHKYYLATSPVSGWLYLSD 1376
Query: 241 AEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300
++ +V SL +V D + N E+ G+G++C+P DET CGD G A+ A L++P+G+ +
Sbjct: 1377 TSSRKVFKVKSLYAVKDVAKNLELVAGTGDQCLPYDETRCGDGGKAVEATLTNPRGITVD 1436
Query: 301 ADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS 360
+F DGT IR + GII TL+G + + P +C S +L+WPT LA+S
Sbjct: 1437 KYGVIFFVDGTMIRRIDQNGIISTLLGFNDLTSA-RPLSCDSVMDISQVRLEWPTDLAVS 1495
Query: 361 PLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420
P+D+SL+ +D+ V+ +++ + +V+IVAG P+HC+ D F V ++
Sbjct: 1496 PMDNSLYVLDNNVVLQISENHQVRIVAGRPMHCQVPGLDH--F----------LVSKIAI 1543
Query: 421 RASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQS-DKKNCNT 479
A+ L S ALA S G LYIA+ D +K+N +R + + G + AG D KN
Sbjct: 1544 HAT---LESANALAVSHNGLLYIAESDEKKINRVRQVSTNGEISLLAGAPSGCDCKNDAN 1600
Query: 480 TNC 482
+C
Sbjct: 1601 CDC 1603
|
|
| UNIPROTKB|F1NVT4 ODZ4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 917 (327.9 bits), Expect = 5.8e-113, Sum P(2) = 5.8e-113
Identities = 187/483 (38%), Positives = 286/483 (59%)
Query: 2 IQIPGSDLHLTYRXXXXXXXXXXXXXXXTHNEIPASLVKVHVRVEIEGSVHTKTYEADPN 61
I + GS + ++Y TH IP +L+KVH+ V +EG + K + A P+
Sbjct: 832 INVSGSKIKVSYLSSRTAGYKSVLRISMTHPTIPFNLMKVHLMVAVEGRLFRKWFAAAPD 891
Query: 62 LTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIV-WETQTCTLQGFDVDISDIGGW 120
L++ F W+K +VY QKVYG+++ +S+GYE+ESC ++ WE +T LQG+++D S +GGW
Sbjct: 892 LSYYFIWDKTDVYSQKVYGLSEAFVSVGYEYESCPDLILWEKRTAVLQGYEIDASKLGGW 951
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
SLD HH N GIL KG+G + + + P + +MG G +R + C C+G+A +LL
Sbjct: 952 SLDKHHALNIQSGILHKGNGENQFISQQ-PPVIGSIMGNGRRRSISCPSCNGLADGNKLL 1010
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISD 240
PVALT G DGSLYVGDFN +RR+ P GNV +L+LS + +++YYL P G +Y+SD
Sbjct: 1011 APVALTCGSDGSLYVGDFNYIRRIFPSGNVTNILELSHSP-AHKYYLTTDPITGSIYLSD 1069
Query: 241 AEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300
+I ++ S SV D N EV G+G++C+P D+T CGD G A L++P+G+ +
Sbjct: 1070 TNSRRIYKIKSTTSVKDIVKNSEVLAGTGDQCLPFDDTRCGDGGKGTDATLTNPRGITVD 1129
Query: 301 ADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS 360
++ DGT IR + GII T++G + + P +C S +L+WPT LA++
Sbjct: 1130 KFGLIYFVDGTMIRRIDQNGIISTVLGSNDLTSA-RPLSCDSVMDISQVRLEWPTDLAVN 1188
Query: 361 PLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420
P+D+SL+ +D+ V+ +++ + +V+IVAG P+HC+ D F SK ++
Sbjct: 1189 PMDNSLYVLDNNVVLQISENHQVRIVAGRPMHCQVPGMDH--FL--LSKV--------AI 1236
Query: 421 RASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQS-DKKNCNT 479
A+ L S TALA S G LYIA+ D +K+N +R + + G + AG S D KN
Sbjct: 1237 HAT---LESATALAVSHNGVLYIAETDEKKINRIRQVTTNGEISLVAGAPSSCDCKNDAN 1293
Query: 480 TNC 482
+C
Sbjct: 1294 CDC 1296
|
|
| UNIPROTKB|E1BR60 ODZ1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 8.2e-112, Sum P(3) = 8.2e-112
Identities = 177/468 (37%), Positives = 279/468 (59%)
Query: 2 IQIPGSDLHLTYRXXXXXXXXXXXXXXXTHNEIPASLVKVHVRVEIEGSVHTKTYEADPN 61
I IP S + L+Y TH IP+ + KVH+ + +EG + K + A N
Sbjct: 1021 IPIPSSFVKLSYLSSRTPGYKTLLRVILTHTTIPSGMTKVHLIIAVEGRLLQKWFPAAAN 1080
Query: 62 LTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSS-IVWETQTCTLQGFDVDISDIGGW 120
L + F WNK ++Y QKV G+A+ +S+GYE+E+C I+WE +T LQGF++D S++GGW
Sbjct: 1081 LVYTFAWNKTDIYGQKVSGLAEAMVSVGYEYETCPDFILWEKRTVILQGFEMDASNLGGW 1140
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
S++ HH N GI+ KG+G ++ + + P +S VMG G QR + C +C+G+A +++L
Sbjct: 1141 SINKHHVLNPQSGIVHKGNGENMFISQQ-PPVISTVMGNGHQRSVSCSNCNGLALNSKLF 1199
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISD 240
PVALTSGPDGS+Y+GDFN VRR+ P GN +L+LS T +++YYLA+ P LY+SD
Sbjct: 1200 APVALTSGPDGSVYIGDFNFVRRIFPSGNSIGILELS-TSPAHKYYLAVDPVSESLYLSD 1258
Query: 241 AEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300
++ + SL D + N +V G+G++C+P D+++CGD G A A L+ P+G+ I
Sbjct: 1259 TNTRRVYKAKSLIETKDLAKNVDVVAGTGDQCLPFDQSHCGDGGKASEASLNSPRGITID 1318
Query: 301 ADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS 360
++ DGT IR + G+I T+IG + + P +C + +L+WPT L ++
Sbjct: 1319 KHGFIYFVDGTMIRKIDENGMITTIIGSNGLTST-QPLSCDSGMDITQVRLEWPTDLTVN 1377
Query: 361 PLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420
PLD+SL+ +D+ ++ +++ +V+I+AG P+HC+ D F SK
Sbjct: 1378 PLDNSLYVLDNNIVLQISESRRVRIIAGRPIHCQVPGIDH--FI--VSKV---------- 1423
Query: 421 RASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAG 468
A + L S A+A S +G LYIA+ D RK+N ++ + + G + AG
Sbjct: 1424 -AIHSTLESARAIAVSHSGILYIAETDERKINRIQQVTTNGEISIIAG 1470
|
|
| UNIPROTKB|F1NVT3 ODZ4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 901 (322.2 bits), Expect = 3.0e-111, Sum P(2) = 3.0e-111
Identities = 186/489 (38%), Positives = 285/489 (58%)
Query: 2 IQIPGSDLHLTYRXXXXXXXXXXXXXXXTHNEIPASLVKVHVRVEIEGSVHTKTYEADPN 61
I + GS + ++Y TH IP +L+KVH+ V +EG + K + A P+
Sbjct: 827 INVSGSKIKVSYLSSRTAGYKSVLRISMTHPTIPFNLMKVHLMVAVEGRLFRKWFAAAPD 886
Query: 62 LTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIV-WETQTCTLQGFDVDISDIGGW 120
L++ F W+K +VY QKVYG+++ +S+GYE+ESC ++ WE +T LQG+++D S +GGW
Sbjct: 887 LSYYFIWDKTDVYSQKVYGLSEAFVSVGYEYESCPDLILWEKRTAVLQGYEIDASKLGGW 946
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
SLD HH N GIL KG+G + + + P + +MG G +R + C C+G+A +LL
Sbjct: 947 SLDKHHALNIQSGILHKGNGENQFISQQ-PPVIGSIMGNGRRRSISCPSCNGLADGNKLL 1005
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLS------ATQVSYQYYLALSPADG 234
PVALT G DGSLYVGDFN +RR+ P GNV +L+L + +++YYL P G
Sbjct: 1006 APVALTCGSDGSLYVGDFNYIRRIFPSGNVTNILELRNKDFRHSHSPAHKYYLTTDPITG 1065
Query: 235 HLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHP 294
+Y+SD +I ++ S SV D N EV G+G++C+P D+T CGD G A L++P
Sbjct: 1066 SIYLSDTNSRRIYKIKSTTSVKDIVKNSEVLAGTGDQCLPFDDTRCGDGGKGTDATLTNP 1125
Query: 295 KGLAIKADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWP 354
+G+ + ++ DGT IR + GII T++G + + P +C S +L+WP
Sbjct: 1126 RGITVDKFGLIYFVDGTMIRRIDQNGIISTVLGSNDLTSA-RPLSCDSVMDISQVRLEWP 1184
Query: 355 TGLALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKST 414
T LA++P+D+SL+ +D+ V+ +++ + +V+IVAG P+HC+ D F SK
Sbjct: 1185 TDLAVNPMDNSLYVLDNNVVLQISENHQVRIVAGRPMHCQVPGMDH--FL--LSKV---- 1236
Query: 415 VQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQS-D 473
++ A+ L S TALA S G LYIA+ D +K+N +R + + G + AG S D
Sbjct: 1237 ----AIHAT---LESATALAVSHNGVLYIAETDEKKINRIRQVTTNGEISLVAGAPSSCD 1289
Query: 474 KKNCNTTNC 482
KN +C
Sbjct: 1290 CKNDANCDC 1298
|
|
| UNIPROTKB|F1NVT5 ODZ4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 901 (322.2 bits), Expect = 3.0e-111, Sum P(2) = 3.0e-111
Identities = 186/489 (38%), Positives = 285/489 (58%)
Query: 2 IQIPGSDLHLTYRXXXXXXXXXXXXXXXTHNEIPASLVKVHVRVEIEGSVHTKTYEADPN 61
I + GS + ++Y TH IP +L+KVH+ V +EG + K + A P+
Sbjct: 829 INVSGSKIKVSYLSSRTAGYKSVLRISMTHPTIPFNLMKVHLMVAVEGRLFRKWFAAAPD 888
Query: 62 LTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIV-WETQTCTLQGFDVDISDIGGW 120
L++ F W+K +VY QKVYG+++ +S+GYE+ESC ++ WE +T LQG+++D S +GGW
Sbjct: 889 LSYYFIWDKTDVYSQKVYGLSEAFVSVGYEYESCPDLILWEKRTAVLQGYEIDASKLGGW 948
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
SLD HH N GIL KG+G + + + P + +MG G +R + C C+G+A +LL
Sbjct: 949 SLDKHHALNIQSGILHKGNGENQFISQQ-PPVIGSIMGNGRRRSISCPSCNGLADGNKLL 1007
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLS------ATQVSYQYYLALSPADG 234
PVALT G DGSLYVGDFN +RR+ P GNV +L+L + +++YYL P G
Sbjct: 1008 APVALTCGSDGSLYVGDFNYIRRIFPSGNVTNILELRNKDFRHSHSPAHKYYLTTDPITG 1067
Query: 235 HLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHP 294
+Y+SD +I ++ S SV D N EV G+G++C+P D+T CGD G A L++P
Sbjct: 1068 SIYLSDTNSRRIYKIKSTTSVKDIVKNSEVLAGTGDQCLPFDDTRCGDGGKGTDATLTNP 1127
Query: 295 KGLAIKADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWP 354
+G+ + ++ DGT IR + GII T++G + + P +C S +L+WP
Sbjct: 1128 RGITVDKFGLIYFVDGTMIRRIDQNGIISTVLGSNDLTSA-RPLSCDSVMDISQVRLEWP 1186
Query: 355 TGLALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKST 414
T LA++P+D+SL+ +D+ V+ +++ + +V+IVAG P+HC+ D F SK
Sbjct: 1187 TDLAVNPMDNSLYVLDNNVVLQISENHQVRIVAGRPMHCQVPGMDH--FL--LSKV---- 1238
Query: 415 VQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQS-D 473
++ A+ L S TALA S G LYIA+ D +K+N +R + + G + AG S D
Sbjct: 1239 ----AIHAT---LESATALAVSHNGVLYIAETDEKKINRIRQVTTNGEISLVAGAPSSCD 1291
Query: 474 KKNCNTTNC 482
KN +C
Sbjct: 1292 CKNDANCDC 1300
|
|
| UNIPROTKB|Q9UKZ4 TENM1 "Teneurin-1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 905 (323.6 bits), Expect = 4.5e-111, Sum P(2) = 4.5e-111
Identities = 177/468 (37%), Positives = 283/468 (60%)
Query: 2 IQIPGSDLHLTYRXXXXXXXXXXXXXXXTHNEIPASLVKVHVRVEIEGSVHTKTYEADPN 61
I IP S + L+Y TH+ IP ++KVH+ V +EG + K + A N
Sbjct: 1017 IPIPSSFVRLSYLSSRTPGYKTLLRILLTHSTIPVGMIKVHLTVAVEGRLTQKWFPAAIN 1076
Query: 62 LTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSS-IVWETQTCTLQGFDVDISDIGGW 120
L + F WNK ++Y QKV+G+A+ +S+GYE+E+C I+WE +T LQGF++D S++GGW
Sbjct: 1077 LVYTFAWNKTDIYGQKVWGLAEALVSVGYEYETCPDFILWEQRTVVLQGFEMDASNLGGW 1136
Query: 121 SLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL 180
SL+ HH N GI+ KG+G ++ + + P +S +MG G QR + C +C+G A + +L
Sbjct: 1137 SLNKHHILNPQSGIIHKGNGENMFISQQ-PPVISTIMGNGHQRSVACTNCNGPAHNNKLF 1195
Query: 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISD 240
PVAL SGPDGS+YVGDFN VRR+ P GN ++L+LS T +++YYLA+ P LY+SD
Sbjct: 1196 APVALASGPDGSVYVGDFNFVRRIFPSGNSVSILELS-TSPAHKYYLAMDPVSESLYLSD 1254
Query: 241 AEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300
++ ++ SL D S N+EV G+G++C+P D+++CGD G A A L+ P+G+ +
Sbjct: 1255 TNTRKVYKLKSLVETKDLSKNFEVVAGTGDQCLPFDQSHCGDGGRASEASLNSPRGITVD 1314
Query: 301 ADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS 360
++ DGT IR + +I T+IG + + P +C + +L+WPT LA++
Sbjct: 1315 RHGFIYFVDGTMIRKIDENAVITTVIGSNGLTST-QPLSCDSGMDITQVRLEWPTDLAVN 1373
Query: 361 PLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420
P+D+SL+ +D+ ++ +++ + +V+I+AG P+HC+ D F SK
Sbjct: 1374 PMDNSLYVLDNNIVLQISENRRVRIIAGRPIHCQVPGIDH--FL--VSKV---------- 1419
Query: 421 RASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAG 468
A + L S A++ S +G L+IA+ D RKVN ++ + + G ++ AG
Sbjct: 1420 -AIHSTLESARAISVSHSGLLFIAETDERKVNRIQQVTTNGEIYIIAG 1466
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 770 | |||
| PLN02919 | 1057 | PLN02919, PLN02919, haloacid dehalogenase-like hyd | 4e-04 | |
| PLN02919 | 1057 | PLN02919, PLN02919, haloacid dehalogenase-like hyd | 6e-04 |
| >gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 42/146 (28%), Positives = 59/146 (40%), Gaps = 33/146 (22%)
Query: 227 LALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDN--- 283
++LSP LYI+D+E I R L L++ G R + G + DN
Sbjct: 745 ISLSPDLKELYIADSESSSI-RALDLKT-------------GGSRLLAGGDPTFSDNLFK 790
Query: 284 -----GPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSP-EGIIHTLIGHHKHHNIW 335
G L HP G+ D +++AD N I+ + P + TL G K
Sbjct: 791 FGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK----- 845
Query: 336 SPFNCHRSFPASTAQLQWPTGLALSP 361
+ F + A AQL P GLAL
Sbjct: 846 AGFKDGK---ALKAQLSEPAGLALGE 868
|
Length = 1057 |
| >gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 17/104 (16%)
Query: 218 ATQVSYQYYLA-LSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGD 276
++V Q+ L L DG +Y++D+ H+I DP+ + G
Sbjct: 798 GSEVLLQHPLGVLCAKDGQIYVADSYNHKI-------KKLDPATK-------RVTTLAGT 843
Query: 277 ETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSP 318
+G AL A+LS P GLA+ + +F+AD N IR +
Sbjct: 844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887
|
Length = 1057 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 770 | |||
| KOG4659|consensus | 1899 | 100.0 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.96 | |
| KOG4659|consensus | 1899 | 99.94 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.93 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.77 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.74 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 99.67 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 99.49 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 99.44 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 99.38 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 99.37 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.36 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.35 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.34 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.32 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.29 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.2 | |
| KOG1214|consensus | 1289 | 99.19 | ||
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.18 | |
| KOG1214|consensus | 1289 | 99.13 | ||
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.12 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 99.1 | |
| KOG1520|consensus | 376 | 99.05 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.98 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 98.97 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.94 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.87 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 98.86 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.77 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.7 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.66 | |
| PF03527 | 41 | RHS: RHS protein; InterPro: IPR001826 RHS elements | 98.63 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 98.52 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.48 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.47 | |
| KOG1520|consensus | 376 | 98.42 | ||
| TIGR01643 | 42 | YD_repeat_2x YD repeat (two copies). This model de | 98.29 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.29 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.2 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 98.14 | |
| PF05593 | 38 | RHS_repeat: RHS Repeat; InterPro: IPR006530 These | 98.12 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.11 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 98.1 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 98.09 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.04 | |
| KOG0318|consensus | 603 | 98.03 | ||
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 97.93 | |
| COG3209 | 796 | RhsA Rhs family protein [Cell envelope biogenesis, | 97.9 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 97.84 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 97.83 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 97.82 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.81 | |
| KOG0291|consensus | 893 | 97.8 | ||
| KOG4499|consensus | 310 | 97.79 | ||
| TIGR01643 | 42 | YD_repeat_2x YD repeat (two copies). This model de | 97.74 | |
| PF05593 | 38 | RHS_repeat: RHS Repeat; InterPro: IPR006530 These | 97.73 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 97.59 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 97.58 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.56 | |
| KOG4499|consensus | 310 | 97.51 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 97.4 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.22 | |
| KOG1215|consensus | 877 | 97.21 | ||
| KOG1215|consensus | 877 | 97.18 | ||
| COG3209 | 796 | RhsA Rhs family protein [Cell envelope biogenesis, | 97.16 | |
| KOG0318|consensus | 603 | 97.11 | ||
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 97.04 | |
| KOG0291|consensus | 893 | 96.81 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.41 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 96.36 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 96.15 | |
| KOG0772|consensus | 641 | 96.07 | ||
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 95.93 | |
| COG3211 | 616 | PhoX Predicted phosphatase [General function predi | 95.88 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.85 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 95.77 | |
| KOG1446|consensus | 311 | 95.63 | ||
| KOG0263|consensus | 707 | 95.63 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 95.59 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 95.39 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.36 | |
| KOG0640|consensus | 430 | 95.35 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 95.14 | |
| COG3211 | 616 | PhoX Predicted phosphatase [General function predi | 95.12 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.04 | |
| KOG0286|consensus | 343 | 94.83 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 94.75 | |
| KOG1446|consensus | 311 | 94.68 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 94.59 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 94.54 | |
| PF15283 | 197 | DUF4595: Domain of unknown function (DUF4595) with | 94.47 | |
| PF06788 | 236 | UPF0257: Uncharacterised protein family (UPF0257); | 94.46 | |
| KOG2106|consensus | 626 | 94.44 | ||
| PF14517 | 229 | Tachylectin: Tachylectin; PDB: 1TL2_A. | 94.33 | |
| KOG0272|consensus | 459 | 94.3 | ||
| KOG1274|consensus | 933 | 94.17 | ||
| PF15283 | 197 | DUF4595: Domain of unknown function (DUF4595) with | 93.99 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 93.96 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 93.71 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 93.67 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 93.62 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 93.56 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 93.35 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 93.01 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 92.99 | |
| TIGR03696 | 76 | Rhs_assc_core RHS repeat-associated core domain. T | 92.81 | |
| KOG0266|consensus | 456 | 92.7 | ||
| PF14517 | 229 | Tachylectin: Tachylectin; PDB: 1TL2_A. | 92.42 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 92.42 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 92.32 | |
| KOG2055|consensus | 514 | 91.78 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 91.55 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 91.36 | |
| KOG0266|consensus | 456 | 91.35 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 91.18 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 91.08 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 90.83 | |
| KOG0772|consensus | 641 | 90.78 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 90.71 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 90.29 | |
| PRK02939 | 236 | lipoprotein; Reviewed | 90.23 | |
| KOG1274|consensus | 933 | 90.07 | ||
| KOG0279|consensus | 315 | 90.02 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 90.01 | |
| KOG0282|consensus | 503 | 89.57 | ||
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 89.37 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 89.37 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 89.26 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 88.6 | |
| KOG2106|consensus | 626 | 88.48 | ||
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 88.03 | |
| KOG0645|consensus | 312 | 87.87 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 87.82 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 87.79 | |
| KOG0279|consensus | 315 | 87.36 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 86.92 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 86.54 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 85.89 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 85.67 | |
| KOG0282|consensus | 503 | 85.47 | ||
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 85.33 | |
| KOG0272|consensus | 459 | 84.22 | ||
| KOG0283|consensus | 712 | 84.03 | ||
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 83.69 | |
| KOG0268|consensus | 433 | 83.67 | ||
| KOG0263|consensus | 707 | 83.41 | ||
| PF07202 | 179 | Tcp10_C: T-complex protein 10 C-terminus; InterPro | 83.19 | |
| PF06739 | 38 | SBBP: Beta-propeller repeat; InterPro: IPR010620 T | 83.15 | |
| PF06739 | 38 | SBBP: Beta-propeller repeat; InterPro: IPR010620 T | 82.76 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 82.67 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 81.7 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 80.77 | |
| PF13860 | 81 | FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A. | 80.46 |
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-151 Score=1255.97 Aligned_cols=586 Identities=40% Similarity=0.708 Sum_probs=565.4
Q ss_pred CcccCCCCeEEEEecCCCCCCceEEEEeecCCCCCCCccEEEEEEEEceeEEEEEeeCCCCceEEEEEecccccCceeee
Q psy4832 1 SIQIPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADPNLTHVFTWNKRNVYKQKVYG 80 (770)
Q Consensus 1 ~~~i~gt~~~l~y~s~r~~g~~~~~~~~~~~~~~p~~l~~v~~~~~v~g~~~~~~~~~~p~~~~~~~W~~~d~y~~~v~g 80 (770)
|||||||+++|+|+|||+|||||+|+|.||+++||.+|+||||+|+|||++|+|+|+|+|||+|||+|||+|+|||+|||
T Consensus 186 sl~ipgt~vrLvY~SsRs~gy~St~ki~lt~d~vp~~l~kVHl~i~ieG~lf~r~f~a~~nl~ytfaWdk~n~YrQrv~G 265 (1899)
T KOG4659|consen 186 SLPIPGTDVRLVYDSSRSPGYPSTMKIGLTYDRVPKELRKVHLNIRIEGRLFDRVFAARPNLTYTFAWDKMNAYRQRVYG 265 (1899)
T ss_pred hccCCCCceEEEEecccCCCcchheEEeecccccccceEEEEEEEEEeeEEeeeeccCCCCcEEEEEecccchhhheeec
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeeeEecccce-eEEeEEEEEeecccccccCCCCCccceeeeeecCCCeEEECCCccEEecccCCCeEEEEecc
Q psy4832 81 VAQCKISIGYEHESCSS-IVWETQTCTLQGFDVDISDIGGWSLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGT 159 (770)
Q Consensus 81 ~~~a~v~~g~~y~~~~~-~~w~~~~~~l~g~~~~~~~~ggw~l~~~~~~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~ 159 (770)
+++|+|+|||||+.|.+ ++|++||++|+|++|+.|++|+|+||+||+||+.+||++||+|+|+|+++ +|++|+++||+
T Consensus 266 l~~avV~VGyeY~~C~~~ivW~~rt~~l~G~~m~~s~~g~W~LdiHH~ln~~~gIl~kGnG~n~~it~-~Prvitt~mgd 344 (1899)
T KOG4659|consen 266 LVPAVVRVGYEYQGCDDTIVWQTRTSQLMGATMRKSIGGGWTLDIHHHLNIVNGILEKGNGGNRLITE-EPRVITTAMGD 344 (1899)
T ss_pred cceeEEEeeeEecCCCceeeeeeehhhhccccccchhcCcceeecceecccccCeEEecCCcceEeec-CCceEEEeccC
Confidence 99999999999999999 89999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CccCCccCCCCCcccccccccCceEEEEcCCCCEEEEeCceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEE
Q psy4832 160 GLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYIS 239 (770)
Q Consensus 160 G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvs 239 (770)
|.+|++.|+.|+|.+...+|.+|.++|..|||+|||+|+|.||||.++|++++++.++.+..++.++||++|.+|.|||+
T Consensus 345 G~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvS 424 (1899)
T KOG4659|consen 345 GHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVS 424 (1899)
T ss_pred cccccccCCCCCCccccceeeceeeEEEcCCCcEEEccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEec
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred eCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCCeEEECCC
Q psy4832 240 DAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTNIRVVSPE 319 (770)
Q Consensus 240 d~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~Ir~id~~ 319 (770)
|+.+++|+|+.++.. +|+.+|++++||+|++|+|+++. ||||+.|.+|+|.+|+|||||++|+|||+|+.+||++|.+
T Consensus 425 dp~s~qv~rv~sl~~-~d~~~N~evvaG~Ge~Clp~des-CGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t~IR~iD~~ 502 (1899)
T KOG4659|consen 425 DPLSKQVWRVSSLEP-QDSRNNYEVVAGDGEVCLPADES-CGDGALAQDAQLIFPKGIAFDKMGNLYFADGTRIRVIDTT 502 (1899)
T ss_pred CCCcceEEEeccCCc-cccccCeeEEeccCcCccccccc-cCcchhcccceeccCCceeEccCCcEEEecccEEEEeccC
Confidence 999999999998887 79999999999999999999988 9999999999999999999999999999999999999999
Q ss_pred CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeCCEEEEEcCCCcEEEEecCCCCCCCCCCC
Q psy4832 320 GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKD 399 (770)
Q Consensus 320 G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~~~I~~i~~~G~v~~vaG~~~~~~~~~~~ 399 (770)
|.|++++|+.... +.|++|+..+...+.+|+||+.||++|+++.|||.|+|.|++|+++++|++++|+|.+|......
T Consensus 503 giIstlig~~~~~--~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~rV~Ii~GrP~hC~~a~~t 580 (1899)
T KOG4659|consen 503 GIISTLIGTTPDQ--HPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHRVRIILGRPTHCDLANAT 580 (1899)
T ss_pred ceEEEeccCCCCc--cCccccccccchhheeeecccceeecCCCCeEEEeecceEEEEccCccEEEEcCCccccccCCCc
Confidence 9999999998887 89999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCC
Q psy4832 400 KRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNT 479 (770)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~ 479 (770)
.. ..+.|.++.|..|.+|||+++|.|||||++.+|||+||++.+||+|..+||.. +.|+|
T Consensus 581 ~~----------------~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~----S~C~C 640 (1899)
T KOG4659|consen 581 SS----------------ASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAK----SPCSC 640 (1899)
T ss_pred hh----------------hhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccCceEEEecCCC----CCCCc
Confidence 22 33778999999999999999999999999999999999999999999999988 89999
Q ss_pred C---CCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeecCCcccCCCCcEEEeCCCCCcEEEEecC
Q psy4832 480 T---NCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYLPTHDEHGEFKIPYPATNEIYVFNRY 556 (770)
Q Consensus 480 ~---~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~~~~~~~~g~~~i~~~~~~e~yvfd~~ 556 (770)
. +|+||+ .++..|+.|+|++|++|||+|||.+||||.+|.||+++....|..++...|+|++|+.+|+|+||..
T Consensus 641 ~~~~~cdcfs---~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr~Vs~~~~~~~~sr~YEi~~p~~QE~Y~Fnr~ 717 (1899)
T KOG4659|consen 641 DVAACCDCFS---LRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIRKVSARMAKYDGSRTYEITDPERQEKYTFNRH 717 (1899)
T ss_pred ccccCCcccc---ccchhhhccccCCcceEEECCCCcEEEecCCchhhhhhhhcccccCCCceeeccCcccceeEEEecc
Confidence 6 499996 6888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCCCcEEEEEecCCCCCCceEEEECCCCCEEEEEEcCCCcce-EeccCCc
Q psy4832 557 GQHITTRDMTSGKPRYSFLYSKNTSFGKLSTITDASGNKINFLRDYSNVAQ-LQWPTGL 614 (770)
Q Consensus 557 G~~~~t~d~~tg~~~y~~~Yd~~~~~G~L~~vtd~~G~~~~~~~d~~~~~~-~~~p~G~ 614 (770)
|+|+.|+++.||.+.|+|+|..+++.|.|++++|++|+.+++.||++.+.. ++.|.|+
T Consensus 718 GqH~sTvsliTget~ynFtY~v~ss~~~lsei~~a~Gn~l~ilrd~~s~~~~~~~~~~q 776 (1899)
T KOG4659|consen 718 GQHSSTVSLITGETFYNFTYQVDSSIGMLSEITDASGNVLRVLRDNDSLFDLETTLGGQ 776 (1899)
T ss_pred ceeeeeEEEEeceeEEEEEEecCCCcchhhhhhhcCCcEEEEEecCCCCcceeecCCCc
Confidence 999999999999999999999998999999999999999999999987766 5667763
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-27 Score=283.32 Aligned_cols=301 Identities=20% Similarity=0.258 Sum_probs=221.9
Q ss_pred cccccCceEEEEcC-CCCEEEEeC--ceEEEEcCCCcEEEEecc-C----------cccccceeEEEEeCCCCcEEEEeC
Q psy4832 176 DARLLTPVALTSGP-DGSLYVGDF--NLVRRLTPEGNVFTVLQL-S----------ATQVSYQYYLALSPADGHLYISDA 241 (770)
Q Consensus 176 ~~~l~~P~~la~~~-dG~lyv~d~--~~I~~i~~~G~v~~~~~~-~----------~~~~~~p~~lav~p~~g~lyvsd~ 241 (770)
...|..|.++++|+ +|+|||+|. ++|++++.+|++...++. + ...+..|.||++++.++.|||+|.
T Consensus 564 ~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt 643 (1057)
T PLN02919 564 TSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT 643 (1057)
T ss_pred cccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC
Confidence 56789999999998 688999998 599999999998876654 1 235788999999986667999999
Q ss_pred CCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCc-ccccccccCcceEEEcc-CCcEEEEeCCC--eEEEC
Q psy4832 242 EKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNG-PALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVS 317 (770)
Q Consensus 242 ~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g-~~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id 317 (770)
.+++|++++. .++.+.+++|+|.. +....++ ......|+.|.+|++++ +|.|||+|..+ |++++
T Consensus 644 ~n~~Ir~id~------~~~~V~tlag~G~~------g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d 711 (1057)
T PLN02919 644 ENHALREIDF------VNETVRTLAGNGTK------GSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYN 711 (1057)
T ss_pred CCceEEEEec------CCCEEEEEeccCcc------cCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEE
Confidence 9999999952 35678888887654 2222222 22334589999999999 78899999876 99999
Q ss_pred C-CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEe--CCEEEEEcCC-CcEEEEecC-CC
Q psy4832 318 P-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID--DRVIFKLTND-LKVKIVAGI-PL 391 (770)
Q Consensus 318 ~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~~~-G~v~~vaG~-~~ 391 (770)
. +|.+.++.|.+.... ..+.......|..|.||+++| ++ .|||+| +++|++++.+ +.++.++|. +.
T Consensus 712 ~~~g~v~~~~G~G~~~~-------~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 712 ISDGVTRVFSGDGYERN-------LNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CCCCeEEEEecCCcccc-------CCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 6 467777776543211 111223345688999999999 65 499999 6899999964 566666542 11
Q ss_pred CCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCcEEEeecCc
Q psy4832 392 HCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGRMFDFAGRW 470 (770)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~ 470 (770)
...... .+......+....|..|.||+++++|+|||||+.+++ |+++++ ++.+.+++|.+
T Consensus 784 ~~~~l~----------------~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~r---IrviD~~tg~v~tiaG~G 844 (1057)
T PLN02919 784 FSDNLF----------------KFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHK---IKKLDPATKRVTTLAGTG 844 (1057)
T ss_pred cCcccc----------------cccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCE---EEEEECCCCeEEEEeccC
Confidence 100000 0000112233456889999999999999999999986 788887 57788888866
Q ss_pred cCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeecCC
Q psy4832 471 QSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYL 531 (770)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~~ 531 (770)
..+. . ++.+..+.|+.|.||+++++|.|||+|.+|++|+.+....
T Consensus 845 ~~G~---------------~-dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 845 KAGF---------------K-DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CcCC---------------C-CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 4332 1 2335678899999999999999999999999999997654
|
|
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-24 Score=241.28 Aligned_cols=434 Identities=16% Similarity=0.171 Sum_probs=283.9
Q ss_pred ccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEE
Q psy4832 219 TQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLA 298 (770)
Q Consensus 219 ~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIa 298 (770)
..+..|..||..| +|.|||.|. +-|+|| -++|++..+..-+.. .-.+-.-||
T Consensus 362 ~~L~aPvala~a~-DGSl~VGDf--NyIRRI-------~~dg~v~tIl~L~~t------------------~~sh~Yy~A 413 (1899)
T KOG4659|consen 362 ISLFAPVALAYAP-DGSLIVGDF--NYIRRI-------SQDGQVSTILTLGLT------------------DTSHSYYIA 413 (1899)
T ss_pred ceeeceeeEEEcC-CCcEEEccc--hheeee-------cCCCceEEEEEecCC------------------CccceeEEE
Confidence 4577899999997 999999998 589999 688998887754321 122456899
Q ss_pred Ecc-CCcEEEEeCCC--eEEEC------CCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEE
Q psy4832 299 IKA-DKTMFIADGTN--IRVVS------PEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFI 369 (770)
Q Consensus 299 vd~-~G~lYvaD~~~--Ir~id------~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~ 369 (770)
++| +|.|||+|... |+++. +.+....++|.|..|..+--. |+++..+..++|.+|.|||||. .|.||++
T Consensus 414 vsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~des-CGDGalA~dA~L~~PkGIa~dk-~g~lYfa 491 (1899)
T KOG4659|consen 414 VSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADES-CGDGALAQDAQLIFPKGIAFDK-MGNLYFA 491 (1899)
T ss_pred ecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccc-cCcchhcccceeccCCceeEcc-CCcEEEe
Confidence 999 99999999876 66653 345677899999988544333 9999999999999999999998 9999999
Q ss_pred eCCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcC-CCCEEEEeCCC
Q psy4832 370 DDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSP-TGDLYIADIDA 448 (770)
Q Consensus 370 D~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~-~G~lyVaD~~~ 448 (770)
|.-+|++||.+|.|+++.|...... .|.. +.......+-+|.+|+.+||+| ++.|||.|..
T Consensus 492 D~t~IR~iD~~giIstlig~~~~~~-----~p~~------------C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n- 553 (1899)
T KOG4659|consen 492 DGTRIRVIDTTGIISTLIGTTPDQH-----PPRT------------CAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN- 553 (1899)
T ss_pred cccEEEEeccCceEEEeccCCCCcc-----Cccc------------cccccchhheeeecccceeecCCCCeEEEeecc-
Confidence 9999999999999999998643321 0100 0111123456789999999999 8899999974
Q ss_pred CceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeee
Q psy4832 449 RKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQ 528 (770)
Q Consensus 449 ~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~ 528 (770)
.|.++++++++..++|.+ .-|+..+...+ +.-++..+.|-.|.+|||.++|.|||++....||-+++
T Consensus 554 ----vvlrit~~~rV~Ii~GrP----~hC~~a~~t~~-----~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr 620 (1899)
T KOG4659|consen 554 ----VVLRITVVHRVRIILGRP----THCDLANATSS-----ASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVR 620 (1899)
T ss_pred ----eEEEEccCccEEEEcCCc----cccccCCCchh-----hhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheE
Confidence 588999999999999988 44544332222 11345566788899999999999999998775555443
Q ss_pred c---CCcc---cCC---------------------------CCcEEEeCCCCCcEEEEecCCceEEEEcCCCCCcEEEEE
Q psy4832 529 H---YLPT---HDE---------------------------HGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFL 575 (770)
Q Consensus 529 ~---~~~~---~~~---------------------------~g~~~i~~~~~~e~yvfd~~G~~~~t~d~~tg~~~y~~~ 575 (770)
+ .... .+. ...+.++...++.+|+.|...-.++++...-- .
T Consensus 621 ~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr~Vs~~~~------~ 694 (1899)
T KOG4659|consen 621 KLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIRKVSARMA------K 694 (1899)
T ss_pred EeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhhhhhhccc------c
Confidence 3 2210 000 11344555556678888765555554433211 1
Q ss_pred ecCCCCCCceEEEECCCCCEEEEEEcCCCcceEeccCCccccCCCCcceeecceee--eee----cCceEEEEEecCCce
Q psy4832 576 YSKNTSFGKLSTITDASGNKINFLRDYSNVAQLQWPTGLALSPLDDSLHFIDDRVI--FKL----TNDLKIRALKKGRFD 649 (770)
Q Consensus 576 Yd~~~~~G~L~~vtd~~G~~~~~~~d~~~~~~~~~p~G~~~~~~d~~~~~~~~~~~--~~~----~~g~l~~~~~~~g~~ 649 (770)
|+. -+..++++++-+.++.....+.-.. +...+.++.. |+| ..|+|.+.++.+|..
T Consensus 695 ~~~----sr~YEi~~p~~QE~Y~Fnr~GqH~s--------------TvsliTget~ynFtY~v~ss~~~lsei~~a~Gn~ 756 (1899)
T KOG4659|consen 695 YDG----SRTYEITDPERQEKYTFNRHGQHSS--------------TVSLITGETFYNFTYQVDSSIGMLSEITDASGNV 756 (1899)
T ss_pred cCC----CceeeccCcccceeEEEeccceeee--------------eEEEEeceeEEEEEEecCCCcchhhhhhhcCCcE
Confidence 443 3555666666665444432221111 1122222222 233 377777777777777
Q ss_pred EEEEEeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEEEeCCCCeEEEEEEccC-CcEeEEE-ecCcEEEEEeCCCCCeE
Q psy4832 650 VTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLISLVYDER-GFLIFAQ-MFRHKYYIATDQCGTPV 727 (770)
Q Consensus 650 ~~y~YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~~~p~~g~~~~~~yd~~-G~l~~~~-~~~~~~~~~~d~~G~~~ 727 (770)
++-.-|..+-.-..+.+.|+++...=+.++...+| -.+ +.....++|+-. |-|.... ..+.++.|.||+.|+++
T Consensus 757 l~ilrd~~s~~~~~~~~~~q~~~l~~~~~g~L~~v---St~-d~~~~~~ty~g~tglL~Tk~d~tg~~~~yeYDe~Grlt 832 (1899)
T KOG4659|consen 757 LRVLRDNDSLFDLETTLGGQTTLLMSAYDGTLEQV---STR-DATSRDATYLGYTGLLLTKRDDTGTAVVYEYDEYGRLT 832 (1899)
T ss_pred EEEEecCCCCcceeecCCCcEEEEEEecCCceeEe---ccC-CCccceeeeeccccceeeeecccceEEEEcccccccee
Confidence 77777777766677777777755555555433222 222 444455555543 2222222 33555555666666666
Q ss_pred EEEcCCCCEEEEEE
Q psy4832 728 MVFNQYGETVREIM 741 (770)
Q Consensus 728 ~~~d~~G~~v~~~~ 741 (770)
-++-+.|.++.+.+
T Consensus 833 ~~~~ptg~v~~ele 846 (1899)
T KOG4659|consen 833 GAKRPTGYVRLELE 846 (1899)
T ss_pred ccccCcceEEecce
Confidence 66666666543433
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-24 Score=258.42 Aligned_cols=294 Identities=21% Similarity=0.234 Sum_probs=211.9
Q ss_pred eeecCCCeEEECCCccEEecccCCCeEEEEeccCccCCcc-----CCCCCcccccccccCceEEEEcCCCC-EEEEeC--
Q psy4832 127 HYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLV-----CKDCDGVARDARLLTPVALTSGPDGS-LYVGDF-- 198 (770)
Q Consensus 127 ~~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~-----~~~~~g~~~~~~l~~P~~la~~~dG~-lyv~d~-- 198 (770)
.|.+|.|++.+.++.++||++..+++|.++.-+|...... +...+|....+.|..|.+|+++++|+ |||+|.
T Consensus 566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645 (1057)
T ss_pred cCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence 4788999999987778999998888898887666542111 11123455678999999999999765 899998
Q ss_pred ceEEEEcCC-CcEEEEeccCc-------------ccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEE
Q psy4832 199 NLVRRLTPE-GNVFTVLQLSA-------------TQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEV 264 (770)
Q Consensus 199 ~~I~~i~~~-G~v~~~~~~~~-------------~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~ 264 (770)
++|++++.. +.+.++.+.+. ..+..|++|+++|.++.|||+|.++++|++++. .++.+.+
T Consensus 646 ~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~------~~g~v~~ 719 (1057)
T PLN02919 646 HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNI------SDGVTRV 719 (1057)
T ss_pred ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEEC------CCCeEEE
Confidence 599999975 55556654321 126789999999888999999999999999953 3566667
Q ss_pred EECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEECCC-CcEEEeecCCCCCCCcCCCcc
Q psy4832 265 AVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVSPE-GIIHTLIGHHKHHNIWSPFNC 340 (770)
Q Consensus 265 vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id~~-G~i~t~~g~~~~~~~~~p~~~ 340 (770)
++|.|.. ...++.....+.|..|.||+++++|. |||+|..+ |+++|.+ |.+..++|.........-...
T Consensus 720 ~~G~G~~-------~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG 792 (1057)
T PLN02919 720 FSGDGYE-------RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFG 792 (1057)
T ss_pred EecCCcc-------ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCccccccc
Confidence 7776532 11123334456788999999999886 99999876 9999975 555555542211000000001
Q ss_pred CCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCC-CcEEEEecCCCCCCCCCCCCccccccccccccccccC
Q psy4832 341 HRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQD 417 (770)
Q Consensus 341 ~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (770)
+..+....+.|..|.+|++++ +|+|||+| +++|++++++ +.+.+++|.+..... +
T Consensus 793 ~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~---d------------------ 850 (1057)
T PLN02919 793 DHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFK---D------------------ 850 (1057)
T ss_pred CCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCC---C------------------
Confidence 112333456799999999999 99999999 7999999975 678888876543221 1
Q ss_pred CcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCC
Q psy4832 418 DSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDST 460 (770)
Q Consensus 418 ~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~ 460 (770)
..+..+.|..|.||+++++|+|||+|+.+++ |++++.+
T Consensus 851 --G~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~---Irvid~~ 888 (1057)
T PLN02919 851 --GKALKAQLSEPAGLALGENGRLFVADTNNSL---IRYLDLN 888 (1057)
T ss_pred --CcccccccCCceEEEEeCCCCEEEEECCCCE---EEEEECC
Confidence 1124567889999999999999999999986 6777753
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-16 Score=164.59 Aligned_cols=219 Identities=22% Similarity=0.389 Sum_probs=157.0
Q ss_pred ceEEEEcC-CCCEEEEeC--ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC
Q psy4832 182 PVALTSGP-DGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP 258 (770)
Q Consensus 182 P~~la~~~-dG~lyv~d~--~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~ 258 (770)
|.++++++ +|.||++|. ++|.++++++....++.. ..|.+++++..++.|||++.....++ + -.
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-----~~~~G~~~~~~~g~l~v~~~~~~~~~--d------~~ 68 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-----PGPNGMAFDRPDGRLYVADSGGIAVV--D------PD 68 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-----SSEEEEEEECTTSEEEEEETTCEEEE--E------TT
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-----CCCceEEEEccCCEEEEEEcCceEEE--e------cC
Confidence 68899998 999999997 599999999887776643 22999999955899999998655444 3 24
Q ss_pred CCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC----------eEEECCCCcEEEeecC
Q psy4832 259 SINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN----------IRVVSPEGIIHTLIGH 328 (770)
Q Consensus 259 ~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~----------Ir~id~~G~i~t~~g~ 328 (770)
++.++.++..-. ....+..|+++++|++|+|||+|... |.+++++|++..+.
T Consensus 69 ~g~~~~~~~~~~----------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~-- 130 (246)
T PF08450_consen 69 TGKVTVLADLPD----------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVA-- 130 (246)
T ss_dssp TTEEEEEEEEET----------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEE--
T ss_pred CCcEEEEeeccC----------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEe--
Confidence 567766663200 01247789999999999999998642 67777777665554
Q ss_pred CCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEe--CCEEEEEcCC--Cc-EE---EEecCCCCCCCCCCC
Q psy4832 329 HKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID--DRVIFKLTND--LK-VK---IVAGIPLHCRTGDKD 399 (770)
Q Consensus 329 ~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~~~--G~-v~---~vaG~~~~~~~~~~~ 399 (770)
..+..|+||+++| ++ .|||+| .++|++++.+ +. +. +++..+
T Consensus 131 --------------------~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~--------- 180 (246)
T PF08450_consen 131 --------------------DGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFP--------- 180 (246)
T ss_dssp --------------------EEESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-S---------
T ss_pred --------------------cCcccccceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcC---------
Confidence 2377899999999 66 599999 5899999954 32 22 222110
Q ss_pred CccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCC
Q psy4832 400 KRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNT 479 (770)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~ 479 (770)
.....|.||++|++|+||||+..+++ |.+++++|++....-.+
T Consensus 181 -------------------------~~~g~pDG~~vD~~G~l~va~~~~~~---I~~~~p~G~~~~~i~~p--------- 223 (246)
T PF08450_consen 181 -------------------------GGPGYPDGLAVDSDGNLWVADWGGGR---IVVFDPDGKLLREIELP--------- 223 (246)
T ss_dssp -------------------------SSSCEEEEEEEBTTS-EEEEEETTTE---EEEEETTSCEEEEEE-S---------
T ss_pred -------------------------CCCcCCCcceEcCCCCEEEEEcCCCE---EEEECCCccEEEEEcCC---------
Confidence 01135999999999999999998875 78899999976654222
Q ss_pred CCCcccccCccCcccccceecCCeeEEEEc-CC-CcEEEEc
Q psy4832 480 TNCAEFEKNSKETLLTSTARFTSISALSVS-PD-GVVNVAD 518 (770)
Q Consensus 480 ~~~~~~~~~~~d~~~~~~~~l~~P~giav~-~d-G~lyvaD 518 (770)
...|+.+++. ++ +.|||+.
T Consensus 224 --------------------~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 224 --------------------VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --------------------SSSEEEEEEESTTSSEEEEEE
T ss_pred --------------------CCCEEEEEEECCCCCEEEEEe
Confidence 1358899994 44 5889875
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.1e-16 Score=159.59 Aligned_cols=196 Identities=29% Similarity=0.413 Sum_probs=142.2
Q ss_pred eeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEc-cC
Q psy4832 224 QYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK-AD 302 (770)
Q Consensus 224 p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd-~~ 302 (770)
|.++++++.++.||++|..+++|++++ +.+....+.. +..|.|++++ ++
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~-------~~~~~~~~~~-----------------------~~~~~G~~~~~~~ 51 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVD-------PDTGEVEVID-----------------------LPGPNGMAFDRPD 51 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEE-------TTTTEEEEEE-----------------------SSSEEEEEEECTT
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEE-------CCCCeEEEEe-----------------------cCCCceEEEEccC
Confidence 679999988999999999999999994 4444333221 2248899999 78
Q ss_pred CcEEEEeCCCeEEECC-CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC----------
Q psy4832 303 KTMFIADGTNIRVVSP-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD---------- 371 (770)
Q Consensus 303 G~lYvaD~~~Ir~id~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~---------- 371 (770)
|.|||++...++++|. .|++..++.... ....+..|+++++++ +|+|||+|.
T Consensus 52 g~l~v~~~~~~~~~d~~~g~~~~~~~~~~----------------~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~ 114 (246)
T PF08450_consen 52 GRLYVADSGGIAVVDPDTGKVTVLADLPD----------------GGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDP 114 (246)
T ss_dssp SEEEEEETTCEEEEETTTTEEEEEEEEET----------------TCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGS
T ss_pred CEEEEEEcCceEEEecCCCcEEEEeeccC----------------CCcccCCCceEEEcC-CCCEEEEecCCCccccccc
Confidence 9999999988888884 577777764310 112477899999999 999999982
Q ss_pred CEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCc
Q psy4832 372 RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARK 450 (770)
Q Consensus 372 ~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~r 450 (770)
++|++++++++++.+.. .+..|+||+++++|. |||+|+.+++
T Consensus 115 g~v~~~~~~~~~~~~~~-------------------------------------~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 115 GSVYRIDPDGKVTVVAD-------------------------------------GLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp EEEEEEETTSEEEEEEE-------------------------------------EESSEEEEEEETTSSEEEEEETTTTE
T ss_pred cceEEECCCCeEEEEec-------------------------------------CcccccceEECCcchheeecccccce
Confidence 46999999888766652 256799999999996 9999999997
Q ss_pred eeeEEEEcCCCcEE---EeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEee
Q psy4832 451 VNALRVIDSTGRMF---DFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILAL 527 (770)
Q Consensus 451 i~~i~~i~~~G~i~---~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i 527 (770)
|.++..-...+++. .++... .....|.||++|++|+|||++..+++|.++
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~g~pDG~~vD~~G~l~va~~~~~~I~~~ 210 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFP---------------------------GGPGYPDGLAVDSDGNLWVADWGGGRIVVF 210 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-S---------------------------SSSCEEEEEEEBTTS-EEEEEETTTEEEEE
T ss_pred eEEEeccccccceeeeeeEEEcC---------------------------CCCcCCCcceEcCCCCEEEEEcCCCEEEEE
Confidence 65443322333232 121100 001359999999999999999988888877
Q ss_pred ecC
Q psy4832 528 QHY 530 (770)
Q Consensus 528 ~~~ 530 (770)
++.
T Consensus 211 ~p~ 213 (246)
T PF08450_consen 211 DPD 213 (246)
T ss_dssp ETT
T ss_pred CCC
Confidence 665
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-14 Score=158.77 Aligned_cols=274 Identities=19% Similarity=0.240 Sum_probs=154.8
Q ss_pred ccccCceEEEEcCCCCEEEEeC--------------ceEEEEcC---CCcEE--EEeccCcccccceeEEEEeCCCCcEE
Q psy4832 177 ARLLTPVALTSGPDGSLYVGDF--------------NLVRRLTP---EGNVF--TVLQLSATQVSYQYYLALSPADGHLY 237 (770)
Q Consensus 177 ~~l~~P~~la~~~dG~lyv~d~--------------~~I~~i~~---~G~v~--~~~~~~~~~~~~p~~lav~p~~g~ly 237 (770)
-.+..|.+|++|++|+|||++. ++|+++.. +|+.. +++ ...+..|.+|++.+ +| ||
T Consensus 11 p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf---a~~l~~p~Gi~~~~-~G-ly 85 (367)
T TIGR02604 11 PLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF---AEELSMVTGLAVAV-GG-VY 85 (367)
T ss_pred CccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe---ecCCCCccceeEec-CC-EE
Confidence 3578999999999999999983 38888853 56643 444 45678899999995 66 99
Q ss_pred EEeCCCcEEEEEeccCCccCCCCcEEEEEC-CCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC-----
Q psy4832 238 ISDAEKHQILRVLSLESVADPSINWEVAVG-SGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT----- 311 (770)
Q Consensus 238 vsd~~~~~I~~i~~~~~~~~~~g~~~~vaG-~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~----- 311 (770)
|++. .+|+++.....--..++..++++. .+.. + ......|++++++++|.|||++..
T Consensus 86 V~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~--------~-------~~~~~~~~~l~~gpDG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 86 VATP--PDILFLRDKDGDDKADGEREVLLSGFGGQ--------I-------NNHHHSLNSLAWGPDGWLYFNHGNTLASK 148 (367)
T ss_pred EeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCC--------C-------CcccccccCceECCCCCEEEecccCCCce
Confidence 9975 478888532210012234444442 1110 0 011346889999999999998872
Q ss_pred ----------------CeEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC--CE
Q psy4832 312 ----------------NIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD--RV 373 (770)
Q Consensus 312 ----------------~Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~--~~ 373 (770)
.|.+++++|....++. ..++.|.||++++ +|+||++|+ +.
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a---------------------~G~rnp~Gl~~d~-~G~l~~tdn~~~~ 206 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGGKLRVVA---------------------HGFQNPYGHSVDS-WGDVFFCDNDDPP 206 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCCeEEEEe---------------------cCcCCCccceECC-CCCEEEEccCCCc
Confidence 1556666653333332 2377899999999 999999996 23
Q ss_pred EEEEcCCCcEEEEecCCCCCCCCCCCCcc-ccccccccc----cccccCCcccccccccCCeeEEEEcC--------CCC
Q psy4832 374 IFKLTNDLKVKIVAGIPLHCRTGDKDKRD-FKDKQSKTK----KSTVQDDSVRASNMDLGSLTALAFSP--------TGD 440 (770)
Q Consensus 374 I~~i~~~G~v~~vaG~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~a~~~~l~~P~giavd~--------~G~ 440 (770)
..++.+-.... -.|.+............ ......... .... ............|.|+++-. .|.
T Consensus 207 ~~~i~~~~~g~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~ 283 (367)
T TIGR02604 207 LCRVTPVAEGG-RNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGV--ETVGDVAGGGTAPCGIAFYRGDALPEEYRGL 283 (367)
T ss_pred eeEEccccccc-ccCCCCCCCcccccccccccccccccccccccccc--cccccccCCCccccEEEEeCCCcCCHHHCCC
Confidence 33333211000 01111100000000000 000000000 0000 00000111234689998862 579
Q ss_pred EEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCC
Q psy4832 441 LYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQG 520 (770)
Q Consensus 441 lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~ 520 (770)
+||++...++|.+++ ++++|.. +.+.. ..++.....+.+|..|+++|||.|||+|..
T Consensus 284 ~fv~~~~~~~v~~~~-l~~~g~~--~~~~~--------------------~~~l~~~~~~~rp~dv~~~pDG~Lyv~d~~ 340 (367)
T TIGR02604 284 LLVGDAHGQLIVRYS-LEPKGAG--FKGER--------------------PEFLRSNDTWFRPVNVTVGPDGALYVSDWY 340 (367)
T ss_pred EEeeeccCCEEEEEE-eecCCCc--cEeec--------------------CceEecCCCcccccceeECCCCCEEEEEec
Confidence 999999998876664 3444431 11111 112222223567999999999999999943
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.7e-12 Score=134.96 Aligned_cols=283 Identities=22% Similarity=0.292 Sum_probs=153.9
Q ss_pred ccCceEEEEcCCCCEEEEeC-ceEEEEcCCCcE-EEEecc---CcccccceeEEEEeC---CCCcEEEEeCCC-------
Q psy4832 179 LLTPVALTSGPDGSLYVGDF-NLVRRLTPEGNV-FTVLQL---SATQVSYQYYLALSP---ADGHLYISDAEK------- 243 (770)
Q Consensus 179 l~~P~~la~~~dG~lyv~d~-~~I~~i~~~G~v-~~~~~~---~~~~~~~p~~lav~p---~~g~lyvsd~~~------- 243 (770)
|..|++|++.|||.|||++. ++|++++.+|.. ..+... .........+||++| .++.||++-+..
T Consensus 1 L~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 1 LNNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp ESSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CCCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 67899999999999999998 699999988887 333332 234456789999998 358999987743
Q ss_pred -cEEEEEeccCCccCCCCcEEEEE-CCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC---------
Q psy4832 244 -HQILRVLSLESVADPSINWEVAV-GSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--------- 312 (770)
Q Consensus 244 -~~I~~i~~~~~~~~~~g~~~~va-G~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--------- 312 (770)
.+|.|+......... ...+++. +... .......-.+|+++++|.|||+-+..
T Consensus 81 ~~~v~r~~~~~~~~~~-~~~~~l~~~~p~----------------~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~ 143 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDL-SSEEVLVTGLPD----------------TSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDP 143 (331)
T ss_dssp EEEEEEEEEETTSCEE-EEEEEEEEEEES-----------------CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCST
T ss_pred ceeeEEEeccCCcccc-ccceEEEEEeCC----------------CCCCCCCCccccCCCCCcEEEEeCCCCCccccccc
Confidence 577777543220000 1122222 2110 01123345689999999999984321
Q ss_pred ------eEEECCCCcEEEeecCCCCCCCcCCCcc--CCCcccccccccCcceEEEeCCCCeEEEEeC-----CEEEEEcC
Q psy4832 313 ------IRVVSPEGIIHTLIGHHKHHNIWSPFNC--HRSFPASTAQLQWPTGLALSPLDDSLHFIDD-----RVIFKLTN 379 (770)
Q Consensus 313 ------Ir~id~~G~i~t~~g~~~~~~~~~p~~~--~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~-----~~I~~i~~ 379 (770)
|.+++++|.+.. . .|... ......-...|++|.+++++|.+|.||++|+ ..|.+|.+
T Consensus 144 ~~~~G~ilri~~dG~~p~---d-------nP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~ 213 (331)
T PF07995_consen 144 NSLRGKILRIDPDGSIPA---D-------NPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEP 213 (331)
T ss_dssp TSSTTEEEEEETTSSB-T---T-------STTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-T
T ss_pred ccccceEEEecccCcCCC---C-------CccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEecc
Confidence 556666654211 0 11110 0112233556899999999994499999993 24555543
Q ss_pred CCcEEEEecCCCCCCCCCC-CCccccccccccccccccCCcccccccccCCeeEEEEcC-------CCCEEEEeCCCCce
Q psy4832 380 DLKVKIVAGIPLHCRTGDK-DKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSP-------TGDLYIADIDARKV 451 (770)
Q Consensus 380 ~G~v~~vaG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~-------~G~lyVaD~~~~ri 451 (770)
.+. .|.|........ +.+.... ..+..+. ... .....-..|.|++|-. .|.++|++...++|
T Consensus 214 G~n----YGWP~~~~~~~~~~~~~~~~----~~~~~~~-~P~-~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i 283 (331)
T PF07995_consen 214 GGN----YGWPYCEGGPKYSGPPIGDA----PSCPGFV-PPV-FAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRI 283 (331)
T ss_dssp T-B------TTTBSSSCSTTSS-ECTG----SS-TTS----S-EEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEE
T ss_pred CCc----CCCCCCcCCCCCCCCccccc----cCCCCcC-ccc-eeecCccccCceEEECCccCccccCcEEEecCCCCEE
Confidence 321 233331110000 0000000 0000000 000 0111125699999852 57899999998887
Q ss_pred eeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecC-CeeEEEEcCCCcEEEEcCCCceEEe
Q psy4832 452 NALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFT-SISALSVSPDGVVNVADQGSLHILA 526 (770)
Q Consensus 452 ~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~-~P~giav~~dG~lyvaD~~~~~I~~ 526 (770)
.++.. +.++.+....- ++ ..+. .|.+|+++|||.|||+|..+++|+|
T Consensus 284 ~~~~~-~~~~~~~~~~~------------------------~~---~~~~~r~~~v~~~pDG~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 284 WRLDL-DEDGSVTEEEE------------------------FL---GGFGGRPRDVAQGPDGALYVSDDSDGKIYR 331 (331)
T ss_dssp EEEEE-ETTEEEEEEEE------------------------EC---TTSSS-EEEEEEETTSEEEEEE-TTTTEEE
T ss_pred EEEee-ecCCCccceEE------------------------cc---ccCCCCceEEEEcCCCeEEEEECCCCeEeC
Confidence 76655 55555322110 00 0122 6999999999999999988888875
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6e-11 Score=117.15 Aligned_cols=237 Identities=16% Similarity=0.212 Sum_probs=164.4
Q ss_pred cCceEEEEcCCCCEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCcc
Q psy4832 180 LTPVALTSGPDGSLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVA 256 (770)
Q Consensus 180 ~~P~~la~~~dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~ 256 (770)
..|..|+.++||.+|+++. +.|-++|+. |++.++. ...-.+|.+|.+.| +|..||+|.++ .|.|++.
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~yp---Lg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dp----- 131 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYP---LGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDP----- 131 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEe---cCCCCCCceEEECC-CCCeeEecCcc-eeEEecC-----
Confidence 4689999999999999987 589999974 8887764 23456899999998 99999999987 9999942
Q ss_pred CCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECCCCcEEEeecCCCCCCCc
Q psy4832 257 DPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSPEGIIHTLIGHHKHHNIW 335 (770)
Q Consensus 257 ~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~~G~i~t~~g~~~~~~~~ 335 (770)
.+..++.+-=..++ ++ .+-+-..+|+.|+|||+.... --++|+...+..++....
T Consensus 132 -kt~evt~f~lp~~~---------a~---------~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----- 187 (353)
T COG4257 132 -KTLEVTRFPLPLEH---------AD---------ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ----- 187 (353)
T ss_pred -cccceEEeeccccc---------CC---------CcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-----
Confidence 14555554322111 11 123456889999999998754 446777644434442221
Q ss_pred CCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcC-CCcEEEEecCCCCCCCCCCCCcccccccccccc
Q psy4832 336 SPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTN-DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKK 412 (770)
Q Consensus 336 ~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~-~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~ 412 (770)
=..|.||++.| +|++|++. .+.|-+|++ ++.-.++. .|.
T Consensus 188 ---------------G~gpyGi~atp-dGsvwyaslagnaiaridp~~~~aev~p-~P~--------------------- 229 (353)
T COG4257 188 ---------------GGGPYGICATP-DGSVWYASLAGNAIARIDPFAGHAEVVP-QPN--------------------- 229 (353)
T ss_pred ---------------CCCCcceEECC-CCcEEEEeccccceEEcccccCCcceec-CCC---------------------
Confidence 12589999999 99999997 688999985 34322221 110
Q ss_pred ccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcE-EEeecCccCCCCCcCCCCCcccccCccC
Q psy4832 413 STVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRM-FDFAGRWQSDKKNCNTTNCAEFEKNSKE 491 (770)
Q Consensus 413 ~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i-~~~aG~~~~~~~~~~~~~~~~~~~~~~d 491 (770)
..-..-..|-.|+.|.++++++.+.+ +.++++.-.. ....
T Consensus 230 ------------~~~~gsRriwsdpig~~wittwg~g~---l~rfdPs~~sW~eyp------------------------ 270 (353)
T COG4257 230 ------------ALKAGSRRIWSDPIGRAWITTWGTGS---LHRFDPSVTSWIEYP------------------------ 270 (353)
T ss_pred ------------cccccccccccCccCcEEEeccCCce---eeEeCcccccceeee------------------------
Confidence 00122366788999999999999986 5667764331 1110
Q ss_pred cccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeecCC
Q psy4832 492 TLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYL 531 (770)
Q Consensus 492 ~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~~ 531 (770)
++... -.|.++-||.-|.+|.+|...+.|.++++..
T Consensus 271 -LPgs~---arpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 271 -LPGSK---ARPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred -CCCCC---CCcceeeeccCCcEEeeccccCceeecCccc
Confidence 00111 2488999999999999999999999997765
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.9e-11 Score=115.97 Aligned_cols=233 Identities=17% Similarity=0.218 Sum_probs=158.0
Q ss_pred cceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEE-CCCccccCCCCCCcCCCcccccccccCcceEEEc
Q psy4832 222 SYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAV-GSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300 (770)
Q Consensus 222 ~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~va-G~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd 300 (770)
..|+.++.+| +|.+|+++...+.|=+++. .+|+++.+. |+|. .|++|.++
T Consensus 62 ~ap~dvapap-dG~VWft~qg~gaiGhLdP------~tGev~~ypLg~Ga----------------------~Phgiv~g 112 (353)
T COG4257 62 SAPFDVAPAP-DGAVWFTAQGTGAIGHLDP------ATGEVETYPLGSGA----------------------SPHGIVVG 112 (353)
T ss_pred CCccccccCC-CCceEEecCccccceecCC------CCCceEEEecCCCC----------------------CCceEEEC
Confidence 4689999997 9999999999999999953 357776654 4333 59999999
Q ss_pred cCCcEEEEeCCC-eEEECC-CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC-CEEEEE
Q psy4832 301 ADKTMFIADGTN-IRVVSP-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD-RVIFKL 377 (770)
Q Consensus 301 ~~G~lYvaD~~~-Ir~id~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~-~~I~~i 377 (770)
++|..||+|+.+ |+++++ .+.++++-=...+ ..+.|+ -..||+ .|+|||+.. +.-=|+
T Consensus 113 pdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~---------------a~~nle---t~vfD~-~G~lWFt~q~G~yGrL 173 (353)
T COG4257 113 PDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEH---------------ADANLE---TAVFDP-WGNLWFTGQIGAYGRL 173 (353)
T ss_pred CCCCeeEecCcceeEEecCcccceEEeeccccc---------------CCCccc---ceeeCC-CccEEEeeccccceec
Confidence 999999999997 999997 5677665321111 122343 457898 999999984 333367
Q ss_pred cCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEE
Q psy4832 378 TNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVI 457 (770)
Q Consensus 378 ~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i 457 (770)
++.-.+..+.-.|. =..|+||++.|+|.+|+++...+. |-++
T Consensus 174 dPa~~~i~vfpaPq-----------------------------------G~gpyGi~atpdGsvwyaslagna---iari 215 (353)
T COG4257 174 DPARNVISVFPAPQ-----------------------------------GGGPYGICATPDGSVWYASLAGNA---IARI 215 (353)
T ss_pred CcccCceeeeccCC-----------------------------------CCCCcceEECCCCcEEEEeccccc---eEEc
Confidence 76544333332221 134899999999999999988765 4555
Q ss_pred cC-CCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeecCCcccC-
Q psy4832 458 DS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYLPTHD- 535 (770)
Q Consensus 458 ~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~~~~~~- 535 (770)
|+ +|.-..+. ..++.-+.-..|-.||-|.+|+++.++.++.++++......
T Consensus 216 dp~~~~aev~p---------------------------~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~e 268 (353)
T COG4257 216 DPFAGHAEVVP---------------------------QPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIE 268 (353)
T ss_pred ccccCCcceec---------------------------CCCcccccccccccCccCcEEEeccCCceeeEeCccccccee
Confidence 54 33211111 11111122345788999999999999999999977543221
Q ss_pred ------CCCcEEEeCCCCCcEEEEecCCceEEEEcCCC
Q psy4832 536 ------EHGEFKIPYPATNEIYVFNRYGQHITTRDMTS 567 (770)
Q Consensus 536 ------~~g~~~i~~~~~~e~yvfd~~G~~~~t~d~~t 567 (770)
....|.+..+..+.+|+.+....-+...|+.+
T Consensus 269 ypLPgs~arpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 269 YPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred eeCCCCCCCcceeeeccCCcEEeeccccCceeecCccc
Confidence 12356677777778887666655555555544
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-10 Score=126.74 Aligned_cols=146 Identities=17% Similarity=0.217 Sum_probs=96.1
Q ss_pred eecCCCeEEECCCccEEeccc-----------CCC-eEEEEec---cCccCCccCCCCCcccccccccCceEEEEcCCCC
Q psy4832 128 YNFHEGILQKGDGSSLHLKHE-----------FPR-TVSVVMG---TGLQRPLVCKDCDGVARDARLLTPVALTSGPDGS 192 (770)
Q Consensus 128 ~~~~~gil~~~dG~~~~~~~~-----------~~~-~i~~v~g---~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~ 192 (770)
+..|.+|+.+.+| ++|+++. ... .|.++.- +|..-. -......+..|.+|++.++|
T Consensus 13 ~~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~-------~~vfa~~l~~p~Gi~~~~~G- 83 (367)
T TIGR02604 13 LRNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDK-------SNVFAEELSMVTGLAVAVGG- 83 (367)
T ss_pred cCCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcce-------eEEeecCCCCccceeEecCC-
Confidence 5678999999999 5888752 122 5555532 232210 01112347789999999999
Q ss_pred EEEEeCceEEEE-cCCC------cEEEEecc-Ccc---cccceeEEEEeCCCCcEEEEeCCC------------------
Q psy4832 193 LYVGDFNLVRRL-TPEG------NVFTVLQL-SAT---QVSYQYYLALSPADGHLYISDAEK------------------ 243 (770)
Q Consensus 193 lyv~d~~~I~~i-~~~G------~v~~~~~~-~~~---~~~~p~~lav~p~~g~lyvsd~~~------------------ 243 (770)
|||++..+|.++ +.+| +...++.. ... ....+.+++++| +|.|||++..+
T Consensus 84 lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~ 162 (367)
T TIGR02604 84 VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGL 162 (367)
T ss_pred EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCccccc
Confidence 999998888888 4433 43344321 111 134588999997 89999988732
Q ss_pred -cEEEEEeccCCccCCCC-cEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC
Q psy4832 244 -HQILRVLSLESVADPSI-NWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN 312 (770)
Q Consensus 244 -~~I~~i~~~~~~~~~~g-~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~ 312 (770)
+.|+++ ++++ .+++++. .+.+|.||+++++|+||++|..+
T Consensus 163 ~g~i~r~-------~pdg~~~e~~a~----------------------G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 163 GGGLFRY-------NPDGGKLRVVAH----------------------GFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CceEEEE-------ecCCCeEEEEec----------------------CcCCCccceECCCCCEEEEccCC
Confidence 356666 3444 3444431 25689999999999999999754
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.8e-10 Score=119.80 Aligned_cols=263 Identities=19% Similarity=0.228 Sum_probs=159.8
Q ss_pred cccCceEEEEcCCCC-EEEEeC-----c--eEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEE
Q psy4832 178 RLLTPVALTSGPDGS-LYVGDF-----N--LVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILR 248 (770)
Q Consensus 178 ~l~~P~~la~~~dG~-lyv~d~-----~--~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~ 248 (770)
...+|..|+++|++. ||++.. + ...+++++ |+...+-.. ...-..|..|+++|.+..||+++...+.|..
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~-~~~g~~p~~i~~~~~g~~l~vany~~g~v~v 113 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV-PSGGSSPCHIAVDPDGRFLYVANYGGGSVSV 113 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE-EESSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee-ccCCCCcEEEEEecCCCEEEEEEccCCeEEE
Confidence 456799999999765 888765 2 34566676 665544322 2245679999999988899999999998877
Q ss_pred EeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEEC--CCC-cE
Q psy4832 249 VLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVS--PEG-II 322 (770)
Q Consensus 249 i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id--~~G-~i 322 (770)
+.. +.+|.+......-. +.|.+-......-.+|+.+.++|+|+ ||++|-+. |++++ ... .+
T Consensus 114 ~~l-----~~~g~l~~~~~~~~--------~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l 180 (345)
T PF10282_consen 114 FPL-----DDDGSLGEVVQTVR--------HEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKL 180 (345)
T ss_dssp EEE-----CTTSEEEEEEEEEE--------SEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TE
T ss_pred EEc-----cCCcccceeeeecc--------cCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceE
Confidence 654 44565543321000 00000001112245799999999986 99999776 66554 333 44
Q ss_pred EEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEe--CCEEEEEc---CCCcEEEEecCCCCCCCC
Q psy4832 323 HTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID--DRVIFKLT---NDLKVKIVAGIPLHCRTG 396 (770)
Q Consensus 323 ~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~---~~G~v~~vaG~~~~~~~~ 396 (770)
........ ..-..|..|+++| ++ .+||+. ++.|..++ .+|.++.+...+.... .
T Consensus 181 ~~~~~~~~------------------~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~-~ 240 (345)
T PF10282_consen 181 TPVDSIKV------------------PPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE-G 240 (345)
T ss_dssp EEEEEEEC------------------STTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET-T
T ss_pred EEeecccc------------------ccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc-c
Confidence 33111000 0112599999999 65 699998 57666665 3565554432221110 0
Q ss_pred CCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEc-CCCcEEEeecCccCCC
Q psy4832 397 DKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVID-STGRMFDFAGRWQSDK 474 (770)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~-~~G~i~~~aG~~~~~~ 474 (770)
. ..-..|.+|+++|+|+ |||+....+.|. +..++ .+|.++.+.-..
T Consensus 241 ~---------------------------~~~~~~~~i~ispdg~~lyvsnr~~~sI~-vf~~d~~~g~l~~~~~~~---- 288 (345)
T PF10282_consen 241 F---------------------------TGENAPAEIAISPDGRFLYVSNRGSNSIS-VFDLDPATGTLTLVQTVP---- 288 (345)
T ss_dssp S---------------------------CSSSSEEEEEE-TTSSEEEEEECTTTEEE-EEEECTTTTTEEEEEEEE----
T ss_pred c---------------------------cccCCceeEEEecCCCEEEEEeccCCEEE-EEEEecCCCceEEEEEEe----
Confidence 0 0013699999999998 999999988763 44554 467776553211
Q ss_pred CCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCc-EEEEcCCCceEEeeec
Q psy4832 475 KNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGV-VNVADQGSLHILALQH 529 (770)
Q Consensus 475 ~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~-lyvaD~~~~~I~~i~~ 529 (770)
..-..|.+++++|+|. |||+++.++.|..+..
T Consensus 289 -----------------------~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 289 -----------------------TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp -----------------------ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred -----------------------CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 0123599999999995 7999998888765543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-10 Score=121.40 Aligned_cols=202 Identities=20% Similarity=0.283 Sum_probs=131.4
Q ss_pred eEEEEcCCC-CEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC
Q psy4832 183 VALTSGPDG-SLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP 258 (770)
Q Consensus 183 ~~la~~~dG-~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~ 258 (770)
.+...+++. .||++|. ++|.+++++ |+..... . .-..+.++.++ ..+.|..++.+-.++ .. +.
T Consensus 28 EgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~-~---p~~~~~~~~~d-~~g~Lv~~~~g~~~~-~~-------~~ 94 (307)
T COG3386 28 EGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP-S---PGGFSSGALID-AGGRLIACEHGVRLL-DP-------DT 94 (307)
T ss_pred cCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE-C---CCCcccceeec-CCCeEEEEccccEEE-ec-------cC
Confidence 444566754 4999997 699999986 5554433 2 12236778888 488888888753322 22 22
Q ss_pred CCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC---------C----eEEECCCCcEEEe
Q psy4832 259 SINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT---------N----IRVVSPEGIIHTL 325 (770)
Q Consensus 259 ~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~---------~----Ir~id~~G~i~t~ 325 (770)
.+.++.++-... ..+++.|+.+.++++|.+||.|.. . ++++++.|.+.++
T Consensus 95 ~~~~t~~~~~~~-----------------~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l 157 (307)
T COG3386 95 GGKITLLAEPED-----------------GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL 157 (307)
T ss_pred CceeEEeccccC-----------------CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe
Confidence 333344442211 234678999999999999999977 1 8888888877776
Q ss_pred ecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEeC--CEEEEEcCCCcEEEEecCCCCCCCCCCCCcc
Q psy4832 326 IGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFIDD--RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRD 402 (770)
Q Consensus 326 ~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D~--~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~ 402 (770)
+.. .+..|+|||++| ++ .||++|+ ++|++++-+-.--.+.+. ....
T Consensus 158 ~~~---------------------~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~-~~~~-------- 206 (307)
T COG3386 158 LDD---------------------DLTIPNGLAFSP-DGKTLYVADTPANRIHRYDLDPATGPIGGR-RGFV-------- 206 (307)
T ss_pred ecC---------------------cEEecCceEECC-CCCEEEEEeCCCCeEEEEecCcccCccCCc-ceEE--------
Confidence 632 266899999999 66 7999995 899999855200000110 0000
Q ss_pred ccccccccccccccCCcccccccccCCeeEEEEcCCCCEEE-EeCCCCceeeEEEEcCCCcEEEee
Q psy4832 403 FKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYI-ADIDARKVNALRVIDSTGRMFDFA 467 (770)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyV-aD~~~~ri~~i~~i~~~G~i~~~a 467 (770)
.....-..|.|+++|.+|+||+ +..+.. +|..++++|+.....
T Consensus 207 -------------------~~~~~~G~PDG~~vDadG~lw~~a~~~g~---~v~~~~pdG~l~~~i 250 (307)
T COG3386 207 -------------------DFDEEPGLPDGMAVDADGNLWVAAVWGGG---RVVRFNPDGKLLGEI 250 (307)
T ss_pred -------------------EccCCCCCCCceEEeCCCCEEEecccCCc---eEEEECCCCcEEEEE
Confidence 0000114699999999999995 444443 478889999865544
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-09 Score=117.03 Aligned_cols=249 Identities=15% Similarity=0.154 Sum_probs=145.8
Q ss_pred cCceEEEEcCCCC-EEEEeC--ceE--EEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCC
Q psy4832 180 LTPVALTSGPDGS-LYVGDF--NLV--RRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLES 254 (770)
Q Consensus 180 ~~P~~la~~~dG~-lyv~d~--~~I--~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~ 254 (770)
..|..|+++|+|. ||++.. +.| .+++.+|++..+-.. .....|.+|+++|.+..||++....++|..++.
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~--- 109 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTHISTDHQGRFLFSASYNANCVSVSPL--- 109 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEE---
Confidence 3688899999987 788765 455 455556765433211 122368999999977789999888888877743
Q ss_pred ccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEEC--CCCcEEEeecCC
Q psy4832 255 VADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVS--PEGIIHTLIGHH 329 (770)
Q Consensus 255 ~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id--~~G~i~t~~g~~ 329 (770)
+.+|.+...... ......|.+++++++|. +|+++... |+.++ .+|.+.......
T Consensus 110 --~~~g~~~~~~~~-------------------~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~ 168 (330)
T PRK11028 110 --DKDGIPVAPIQI-------------------IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE 168 (330)
T ss_pred --CCCCCCCCceee-------------------ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence 222322111100 00123689999999885 88888653 66554 445442111000
Q ss_pred CCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEe--CCEEEEEcC---CCcEEEEecCCCCCCCCCCCCccc
Q psy4832 330 KHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID--DRVIFKLTN---DLKVKIVAGIPLHCRTGDKDKRDF 403 (770)
Q Consensus 330 ~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~~---~G~v~~vaG~~~~~~~~~~~~~~~ 403 (770)
.. .+ .=..|.+++++| +| .||+++ .+.|..++. .|+++.+.-..... .
T Consensus 169 ~~------~~----------~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p--~------- 222 (330)
T PRK11028 169 VT------TV----------EGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP--A------- 222 (330)
T ss_pred ee------cC----------CCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC--C-------
Confidence 00 00 012488999999 65 588987 467665553 35543322111000 0
Q ss_pred cccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCC
Q psy4832 404 KDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNC 482 (770)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~ 482 (770)
....-..|.+|+++|+|. ||+++...+.|. +..++.++...++.+.-.
T Consensus 223 -------------------~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~-v~~i~~~~~~~~~~~~~~----------- 271 (330)
T PRK11028 223 -------------------DFSDTRWAADIHITPDGRHLYACDRTASLIS-VFSVSEDGSVLSFEGHQP----------- 271 (330)
T ss_pred -------------------cCCCCccceeEEECCCCCEEEEecCCCCeEE-EEEEeCCCCeEEEeEEEe-----------
Confidence 000012467899999987 999987766653 344555654333332210
Q ss_pred cccccCccCcccccceecCCeeEEEEcCCC-cEEEEcCCCceEEee
Q psy4832 483 AEFEKNSKETLLTSTARFTSISALSVSPDG-VVNVADQGSLHILAL 527 (770)
Q Consensus 483 ~~~~~~~~d~~~~~~~~l~~P~giav~~dG-~lyvaD~~~~~I~~i 527 (770)
.-..|.+++++||| .||++...++.|..+
T Consensus 272 ----------------~~~~p~~~~~~~dg~~l~va~~~~~~v~v~ 301 (330)
T PRK11028 272 ----------------TETQPRGFNIDHSGKYLIAAGQKSHHISVY 301 (330)
T ss_pred ----------------ccccCCceEECCCCCEEEEEEccCCcEEEE
Confidence 01358899999999 678888777766554
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.7e-10 Score=117.74 Aligned_cols=203 Identities=23% Similarity=0.266 Sum_probs=133.6
Q ss_pred cceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC-CCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEc
Q psy4832 222 SYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP-SINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300 (770)
Q Consensus 222 ~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~-~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd 300 (770)
....+...++..+.||++|-..++|+++ ++ +|...++.-.+ ..+.++.++
T Consensus 25 ~~gEgP~w~~~~~~L~w~DI~~~~i~r~-------~~~~g~~~~~~~p~----------------------~~~~~~~~d 75 (307)
T COG3386 25 TLGEGPVWDPDRGALLWVDILGGRIHRL-------DPETGKKRVFPSPG----------------------GFSSGALID 75 (307)
T ss_pred ccccCccCcCCCCEEEEEeCCCCeEEEe-------cCCcCceEEEECCC----------------------Ccccceeec
Confidence 3455667787788899999999999999 45 35555543211 136688999
Q ss_pred cCCcEEEEeCCC-eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeCC-------
Q psy4832 301 ADKTMFIADGTN-IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDR------- 372 (770)
Q Consensus 301 ~~G~lYvaD~~~-Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~~------- 372 (770)
+.|.|..++.+. ++.++..+.++.++-.. ....++.|+++.++| +|.+||.|.+
T Consensus 76 ~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~-----------------~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~ 137 (307)
T COG3386 76 AGGRLIACEHGVRLLDPDTGGKITLLAEPE-----------------DGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKS 137 (307)
T ss_pred CCCeEEEEccccEEEeccCCceeEEecccc-----------------CCCCcCCCCceeEcC-CCCEEEeCCCccccCcc
Confidence 999999998775 44444445545544322 123567899999999 9999999843
Q ss_pred ------EEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCC-CEEEEe
Q psy4832 373 ------VIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTG-DLYIAD 445 (770)
Q Consensus 373 ------~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G-~lyVaD 445 (770)
.|++++++|.+..+.- ..+..|+|||++||| .||++|
T Consensus 138 ~~~~~G~lyr~~p~g~~~~l~~------------------------------------~~~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 138 EERPTGSLYRVDPDGGVVRLLD------------------------------------DDLTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred ccCCcceEEEEcCCCCEEEeec------------------------------------CcEEecCceEECCCCCEEEEEe
Confidence 5888888776655542 114569999999999 599999
Q ss_pred CCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCC-ceE
Q psy4832 446 IDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGS-LHI 524 (770)
Q Consensus 446 ~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~-~~I 524 (770)
+..++|.++..-..+|.+ .+.. .... |.. .=..|.|+++|.+|.||++-..+ .+|
T Consensus 182 T~~~~i~r~~~d~~~g~~---~~~~--~~~~-----~~~--------------~~G~PDG~~vDadG~lw~~a~~~g~~v 237 (307)
T COG3386 182 TPANRIHRYDLDPATGPI---GGRR--GFVD-----FDE--------------EPGLPDGMAVDADGNLWVAAVWGGGRV 237 (307)
T ss_pred CCCCeEEEEecCcccCcc---CCcc--eEEE-----ccC--------------CCCCCCceEEeCCCCEEEecccCCceE
Confidence 998875444221111221 1100 0000 000 01359999999999999654443 488
Q ss_pred EeeecCC
Q psy4832 525 LALQHYL 531 (770)
Q Consensus 525 ~~i~~~~ 531 (770)
.++.+..
T Consensus 238 ~~~~pdG 244 (307)
T COG3386 238 VRFNPDG 244 (307)
T ss_pred EEECCCC
Confidence 8887663
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-08 Score=111.40 Aligned_cols=240 Identities=20% Similarity=0.270 Sum_probs=142.0
Q ss_pred EEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeC---CCcEEEEEeccCCccCCC-CcEEEEECCCccccCC
Q psy4832 201 VRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDA---EKHQILRVLSLESVADPS-INWEVAVGSGERCIPG 275 (770)
Q Consensus 201 I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~---~~~~I~~i~~~~~~~~~~-g~~~~vaG~g~~~~p~ 275 (770)
+.++|. +|++..+- . ......|..|+++|.+..||+++. ..+.|..+.. +++ |.++.+.-...
T Consensus 17 ~~~~d~~~g~l~~~~-~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i-----~~~~g~L~~~~~~~~----- 84 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQ-T-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRI-----DPDTGTLTLLNSVPS----- 84 (345)
T ss_dssp EEEEETTTTEEEEEE-E-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEE-----ETTTTEEEEEEEEEE-----
T ss_pred EEEEcCCCCCceEee-e-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEE-----CCCcceeEEeeeecc-----
Confidence 344543 35544332 2 335678999999998899999988 4677766643 344 66655432110
Q ss_pred CCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC----eEEECCCCcEEEeecCCCCCCCcCCCccCCCccccccc
Q psy4832 276 DETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN----IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQ 350 (770)
Q Consensus 276 ~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~----Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~ 350 (770)
.-..|..|+++++|. ||++.... +..++.+|.+......-..... .|. .....
T Consensus 85 --------------~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~-g~~-------~~rq~ 142 (345)
T PF10282_consen 85 --------------GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS-GPN-------PDRQE 142 (345)
T ss_dssp --------------SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE-ESS-------TTTTS
T ss_pred --------------CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC-CCc-------ccccc
Confidence 112588999999876 89998644 5667788876654321000000 000 01112
Q ss_pred ccCcceEEEeCCCC-eEEEEe--CCEEEEEcCC---CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccc
Q psy4832 351 LQWPTGLALSPLDD-SLHFID--DRVIFKLTND---LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASN 424 (770)
Q Consensus 351 l~~P~gla~d~~~g-~lyv~D--~~~I~~i~~~---G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 424 (770)
-..|..+.++| +| .|||+| .++|+.++.+ +++........
T Consensus 143 ~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~--------------------------------- 188 (345)
T PF10282_consen 143 GPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV--------------------------------- 188 (345)
T ss_dssp STCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC---------------------------------
T ss_pred cccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc---------------------------------
Confidence 34689999999 65 599999 5787777733 23433221100
Q ss_pred cccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCe
Q psy4832 425 MDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSI 503 (770)
Q Consensus 425 ~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P 503 (770)
..-..|+.|+|+|+|. +||+...++.|..+..-..+|.+..+....... .....-+.|
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~---------------------~~~~~~~~~ 247 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP---------------------EGFTGENAP 247 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE---------------------TTSCSSSSE
T ss_pred ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc---------------------ccccccCCc
Confidence 0113499999999986 999999988876654443677665443211100 000111479
Q ss_pred eEEEEcCCCc-EEEEcCCCceEEeeec
Q psy4832 504 SALSVSPDGV-VNVADQGSLHILALQH 529 (770)
Q Consensus 504 ~giav~~dG~-lyvaD~~~~~I~~i~~ 529 (770)
.+|+++|||. |||+..+.+.|..+.-
T Consensus 248 ~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred eeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 9999999995 7999999888766654
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.3e-08 Score=105.65 Aligned_cols=236 Identities=14% Similarity=0.166 Sum_probs=130.4
Q ss_pred EEEEeC--ceEEEEc--CCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECC
Q psy4832 193 LYVGDF--NLVRRLT--PEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGS 268 (770)
Q Consensus 193 lyv~d~--~~I~~i~--~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~ 268 (770)
+|++.. +.|+.++ .+|+...+-.. .....|..|+++|....||++....+.|..++. +.+|.+..+. .
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~--~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~-----~~~g~l~~~~-~ 75 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVV--DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI-----ADDGALTFAA-E 75 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEE--ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE-----CCCCceEEee-e
Confidence 566644 3444444 34654322111 122468899999966679999887777755532 3344443322 1
Q ss_pred CccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEE--CCCCcEEEeecCCCCCCCcCCCccCCC
Q psy4832 269 GERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVV--SPEGIIHTLIGHHKHHNIWSPFNCHRS 343 (770)
Q Consensus 269 g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~i--d~~G~i~t~~g~~~~~~~~~p~~~~~~ 343 (770)
.. ....|.+|+++++|+ ||++.... |..+ +.+|.+......-
T Consensus 76 ~~-------------------~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-------------- 122 (330)
T PRK11028 76 SP-------------------LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-------------- 122 (330)
T ss_pred ec-------------------CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec--------------
Confidence 00 012588999999887 88876422 5544 4455432221110
Q ss_pred cccccccccCcceEEEeCCCC-eEEEEe--CCEEEEEcC--CCcEEEEecCCCCCCCCCCCCccccccccccccccccCC
Q psy4832 344 FPASTAQLQWPTGLALSPLDD-SLHFID--DRVIFKLTN--DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDD 418 (770)
Q Consensus 344 ~~~~~~~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~~--~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (770)
.....|.+++++| ++ .|||++ .+.|..++. +|.+..........
T Consensus 123 -----~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~------------------------- 171 (330)
T PRK11028 123 -----EGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT------------------------- 171 (330)
T ss_pred -----cCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec-------------------------
Confidence 0124588999999 55 688988 466766663 34332110000000
Q ss_pred cccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCcccccCccCccccc
Q psy4832 419 SVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTS 496 (770)
Q Consensus 419 ~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 496 (770)
..-..|.+++++|+|. |||++...+.|. +..++. .|++..+.--... ....
T Consensus 172 ------~~g~~p~~~~~~pdg~~lyv~~~~~~~v~-v~~~~~~~~~~~~~~~~~~~-----------------p~~~--- 224 (330)
T PRK11028 172 ------VEGAGPRHMVFHPNQQYAYCVNELNSSVD-VWQLKDPHGEIECVQTLDMM-----------------PADF--- 224 (330)
T ss_pred ------CCCCCCceEEECCCCCEEEEEecCCCEEE-EEEEeCCCCCEEEEEEEecC-----------------CCcC---
Confidence 0013489999999987 899988777653 333433 4554332100000 0000
Q ss_pred ceecCCeeEEEEcCCCc-EEEEcCCCceEEeee
Q psy4832 497 TARFTSISALSVSPDGV-VNVADQGSLHILALQ 528 (770)
Q Consensus 497 ~~~l~~P~giav~~dG~-lyvaD~~~~~I~~i~ 528 (770)
..-..|.+|+++|+|. +|+++...+.|..+.
T Consensus 225 -~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~ 256 (330)
T PRK11028 225 -SDTRWAADIHITPDGRHLYACDRTASLISVFS 256 (330)
T ss_pred -CCCccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence 0012467899999985 799988777776554
|
|
| >KOG1214|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-09 Score=121.72 Aligned_cols=223 Identities=18% Similarity=0.202 Sum_probs=158.8
Q ss_pred CEEEEeCceEEEEcCCCcEEE------EeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEE
Q psy4832 192 SLYVGDFNLVRRLTPEGNVFT------VLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVA 265 (770)
Q Consensus 192 ~lyv~d~~~I~~i~~~G~v~~------~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~v 265 (770)
.|.++....|.++..+|.... ++.+ .-.-+.||++|=.+..+||+|...+.|.+-...+ +..+++
T Consensus 992 ~LL~aqg~~I~~lplng~~~~K~~ak~~l~~---p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G------~Ep~ti 1062 (1289)
T KOG1214|consen 992 FLLYAQGQQIGYLPLNGTRLQKDAAKTLLSL---PGSIIVGIDFDCRERMVYWTDVAGRSISRASLEG------AEPETI 1062 (1289)
T ss_pred eEEEeccceEEEeecCcchhchhhhhceEec---ccceeeeeecccccceEEEeecCCCccccccccC------CCCcee
Confidence 366666667777766664332 1211 1234679999988899999999999898763211 122233
Q ss_pred ECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCccCC
Q psy4832 266 VGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHR 342 (770)
Q Consensus 266 aG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~ 342 (770)
+ +..|..|.|||||- ..+||++|+.+ |-+-..||+...++-.
T Consensus 1063 ~---------------------n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~-------------- 1107 (1289)
T KOG1214|consen 1063 V---------------------NSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFY-------------- 1107 (1289)
T ss_pred e---------------------cccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEe--------------
Confidence 2 23477999999997 45699999977 7666678876665422
Q ss_pred CcccccccccCcceEEEeCCCCeEEEEe----CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCC
Q psy4832 343 SFPASTAQLQWPTGLALSPLDDSLHFID----DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDD 418 (770)
Q Consensus 343 ~~~~~~~~l~~P~gla~d~~~g~lyv~D----~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (770)
..|-+|.+|++|+..++||++| |-+|-+.+.||+-+.+.
T Consensus 1108 ------tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRil------------------------------- 1150 (1289)
T KOG1214|consen 1108 ------TDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRIL------------------------------- 1150 (1289)
T ss_pred ------ecccCcceEEeecccCceeeccccccCCcceeeccCCccceEE-------------------------------
Confidence 2477899999999999999999 45788888888765554
Q ss_pred cccccccccCCeeEEEEcCCC-CEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccc
Q psy4832 419 SVRASNMDLGSLTALAFSPTG-DLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTST 497 (770)
Q Consensus 419 ~~~a~~~~l~~P~giavd~~G-~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 497 (770)
++..+.-|+||.|||.- .|-|+|.+++| +.-+.++|.-...+ .
T Consensus 1151 ----in~DigLPNGLtfdpfs~~LCWvDAGt~r---leC~~p~g~gRR~i-----------------------------~ 1194 (1289)
T KOG1214|consen 1151 ----INTDIGLPNGLTFDPFSKLLCWVDAGTKR---LECTLPDGTGRRVI-----------------------------Q 1194 (1289)
T ss_pred ----eecccCCCCCceeCcccceeeEEecCCcc---eeEecCCCCcchhh-----------------------------h
Confidence 22335669999999954 59999999987 45555665422221 1
Q ss_pred eecCCeeEEEEcCCCcEEEEcCCCceEEeeecCCc
Q psy4832 498 ARFTSISALSVSPDGVVNVADQGSLHILALQHYLP 532 (770)
Q Consensus 498 ~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~~~ 532 (770)
..|+.|.+|.-+.+. +|.+|-..++|..+..+..
T Consensus 1195 ~~LqYPF~itsy~~~-fY~TDWk~n~vvsv~~~~~ 1228 (1289)
T KOG1214|consen 1195 NNLQYPFSITSYADH-FYHTDWKRNGVVSVNKHSG 1228 (1289)
T ss_pred hcccCceeeeecccc-ceeeccccCceEEeecccc
Confidence 237889999998774 9999999999999987754
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-08 Score=112.49 Aligned_cols=238 Identities=19% Similarity=0.279 Sum_probs=157.3
Q ss_pred CceEEEEcCCC-CEEEEeC--ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 181 TPVALTSGPDG-SLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 181 ~P~~la~~~dG-~lyv~d~--~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
.|.++++.++| .+||+.. +.+..++..-...+... .....+|.++++++....+|+.+...+.|.+|+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~--~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~------ 103 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSL--SVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDT------ 103 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeec--cCCCccccceeeCCCCCeEEEecCCCCeEEEEcC------
Confidence 89999999999 7999885 46667765433333221 2233789999999877789999999999999951
Q ss_pred CCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCC-cEEEEeCC--C--eEEECCCC-cEEEeecCCCC
Q psy4832 258 PSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADK-TMFIADGT--N--IRVVSPEG-IIHTLIGHHKH 331 (770)
Q Consensus 258 ~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G-~lYvaD~~--~--Ir~id~~G-~i~t~~g~~~~ 331 (770)
....+..... .| ..|.++++++++ .+||++.. + |.++|... ++......+
T Consensus 104 ~~~~~~~~~~------------vG----------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-- 159 (381)
T COG3391 104 ATNTVLGSIP------------VG----------LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-- 159 (381)
T ss_pred cccceeeEee------------ec----------cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC--
Confidence 1111111111 11 169999999977 69999984 3 88898763 333322221
Q ss_pred CCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCcccccccc
Q psy4832 332 HNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQS 408 (770)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~ 408 (770)
..|.+++++| +|+ +|+++ +++|..++.++..... +.+..
T Consensus 160 --------------------~~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~---------------- 201 (381)
T COG3391 160 --------------------NTPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGS---------------- 201 (381)
T ss_pred --------------------CCcceEEECC-CCCeEEEEecCCCeEEEEeCCCcceec-ccccc----------------
Confidence 1578999999 665 99999 7899999866542222 22111
Q ss_pred ccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCccccc
Q psy4832 409 KTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEK 487 (770)
Q Consensus 409 ~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~ 487 (770)
....+..|.+++++++|. +||++..+.. +++.+++......+....
T Consensus 202 --------------~~~~~~~P~~i~v~~~g~~~yV~~~~~~~-~~v~~id~~~~~v~~~~~------------------ 248 (381)
T COG3391 202 --------------LVGVGTGPAGIAVDPDGNRVYVANDGSGS-NNVLKIDTATGNVTATDL------------------ 248 (381)
T ss_pred --------------ccccCCCCceEEECCCCCEEEEEeccCCC-ceEEEEeCCCceEEEecc------------------
Confidence 112356799999999998 9999998731 246777753322121100
Q ss_pred CccCcccccceecCCeeEEEEcCCCc-EEEEcCCCceEEeeecC
Q psy4832 488 NSKETLLTSTARFTSISALSVSPDGV-VNVADQGSLHILALQHY 530 (770)
Q Consensus 488 ~~~d~~~~~~~~l~~P~giav~~dG~-lyvaD~~~~~I~~i~~~ 530 (770)
....+ .|.+++++|+|. +|+++...+.+..+...
T Consensus 249 --------~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 249 --------PVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred --------ccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 11235 689999999985 57777776666666543
|
|
| >KOG1214|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.1e-10 Score=122.91 Aligned_cols=188 Identities=15% Similarity=0.189 Sum_probs=140.6
Q ss_pred ceEEEEcC-CCCEEEEeC--ceEEEEcCCCc-EEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 182 PVALTSGP-DGSLYVGDF--NLVRRLTPEGN-VFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 182 P~~la~~~-dG~lyv~d~--~~I~~i~~~G~-v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
|.+|++|= +-.||++|. ..|+|-..+|. -.+++ ...|..|.|||||...-++|++|+.+.+|-.- .
T Consensus 1027 iVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~---n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA-------~ 1096 (1289)
T KOG1214|consen 1027 IVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIV---NSGLISPEGIAVDHIRRNMYWTDSVLDKIEVA-------L 1096 (1289)
T ss_pred eeeeecccccceEEEeecCCCccccccccCCCCceee---cccCCCccceeeeeccceeeeeccccchhhee-------e
Confidence 56667764 677999997 47999988875 45666 45789999999999899999999988887655 3
Q ss_pred CCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC----eEEECCCCcEEEeecCCCCC
Q psy4832 258 PSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN----IRVVSPEGIIHTLIGHHKHH 332 (770)
Q Consensus 258 ~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~----Ir~id~~G~i~t~~g~~~~~ 332 (770)
.+|....+.= ...|-+|++|++|+ .|+||++|+.+ |-..+.||+-..++=.
T Consensus 1097 LdG~~rkvLf--------------------~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin---- 1152 (1289)
T KOG1214|consen 1097 LDGSERKVLF--------------------YTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILIN---- 1152 (1289)
T ss_pred cCCceeeEEE--------------------eecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEee----
Confidence 4555433221 12367999999999 78899999976 8888888865554422
Q ss_pred CCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCcccccccccc
Q psy4832 333 NIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKT 410 (770)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~ 410 (770)
..+.-|+||.|+|....|-++| ++|+.-+.++|.-+.++
T Consensus 1153 ----------------~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i----------------------- 1193 (1289)
T KOG1214|consen 1153 ----------------TDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVI----------------------- 1193 (1289)
T ss_pred ----------------cccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhh-----------------------
Confidence 2356799999999667789999 68888888887533332
Q ss_pred ccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEE
Q psy4832 411 KKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRV 456 (770)
Q Consensus 411 ~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~ 456 (770)
...|..|.+|+-+.+ ++|++|+..++|..+.+
T Consensus 1194 -------------~~~LqYPF~itsy~~-~fY~TDWk~n~vvsv~~ 1225 (1289)
T KOG1214|consen 1194 -------------QNNLQYPFSITSYAD-HFYHTDWKRNGVVSVNK 1225 (1289)
T ss_pred -------------hhcccCceeeeeccc-cceeeccccCceEEeec
Confidence 234778999987765 49999998877655543
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-08 Score=109.40 Aligned_cols=235 Identities=19% Similarity=0.303 Sum_probs=154.4
Q ss_pred cCCCeEEECCCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCC-EEEEeC--ceEEEEcC
Q psy4832 130 FHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGS-LYVGDF--NLVRRLTP 206 (770)
Q Consensus 130 ~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~-lyv~d~--~~I~~i~~ 206 (770)
.|.++++..+|..+|+++.....+..+.- . .....|. ....+..|.++++.++|+ +|+... +.|.+|+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~-~-~n~~~~~------~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~ 103 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDA-T-SNTVTQS------LSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDT 103 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeeccc-c-cceeeee------ccCCCccccceeeCCCCCeEEEecCCCCeEEEEcC
Confidence 78899999999999998855554444432 2 2212121 111227899999999887 999984 79999984
Q ss_pred C-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeC--CCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCC
Q psy4832 207 E-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDA--EKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDN 283 (770)
Q Consensus 207 ~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~--~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~ 283 (770)
+ -++...+..+ ..|.+++++|.++.+||++. .++.|.+++ ...+...... +-|
T Consensus 104 ~~~~~~~~~~vG----~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid-------~~t~~~~~~~-----------~vG-- 159 (381)
T COG3391 104 ATNTVLGSIPVG----LGPVGLAVDPDGKYVYVANAGNGNNTVSVID-------AATNKVTATI-----------PVG-- 159 (381)
T ss_pred cccceeeEeeec----cCCceEEECCCCCEEEEEecccCCceEEEEe-------CCCCeEEEEE-----------ecC--
Confidence 3 3333333221 28999999998889999999 579999995 3322211111 001
Q ss_pred cccccccccCcceEEEccCCc-EEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEe
Q psy4832 284 GPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS 360 (770)
Q Consensus 284 g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d 360 (770)
..|.+++++++|+ +|+++... |..++.++.-..- +.... ....+..|.+++++
T Consensus 160 --------~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~---------------~~~~~~~P~~i~v~ 215 (381)
T COG3391 160 --------NTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGS---------------LVGVGTGPAGIAVD 215 (381)
T ss_pred --------CCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccc---------------ccccCCCCceEEEC
Confidence 0578999999998 99999433 8888876633221 22110 11246689999999
Q ss_pred CCCCe-EEEEeC----CEEEEEcCC-CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEE
Q psy4832 361 PLDDS-LHFIDD----RVIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALA 434 (770)
Q Consensus 361 ~~~g~-lyv~D~----~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~gia 434 (770)
+ +|. +||++. +.|.+++.. +.+... .. ....+ .|.+++
T Consensus 216 ~-~g~~~yV~~~~~~~~~v~~id~~~~~v~~~-~~---------------------------------~~~~~-~~~~v~ 259 (381)
T COG3391 216 P-DGNRVYVANDGSGSNNVLKIDTATGNVTAT-DL---------------------------------PVGSG-APRGVA 259 (381)
T ss_pred C-CCCEEEEEeccCCCceEEEEeCCCceEEEe-cc---------------------------------ccccC-CCCcee
Confidence 9 665 999983 488888854 332221 11 11234 689999
Q ss_pred EcCCCC-EEEEeCCCCceeeEEEEcC
Q psy4832 435 FSPTGD-LYIADIDARKVNALRVIDS 459 (770)
Q Consensus 435 vd~~G~-lyVaD~~~~ri~~i~~i~~ 459 (770)
++|+|. +||++...+. +..++.
T Consensus 260 ~~p~g~~~yv~~~~~~~---V~vid~ 282 (381)
T COG3391 260 VDPAGKAAYVANSQGGT---VSVIDG 282 (381)
T ss_pred ECCCCCEEEEEecCCCe---EEEEeC
Confidence 999987 8888777554 666664
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.5e-08 Score=105.36 Aligned_cols=184 Identities=22% Similarity=0.201 Sum_probs=104.9
Q ss_pred ccccCceEEEEcCCCCEEEEeC--ceEEEEcCCC-cEEEEeccC----cccccceeEEEEeCC------CCcEEEEeC--
Q psy4832 177 ARLLTPVALTSGPDGSLYVGDF--NLVRRLTPEG-NVFTVLQLS----ATQVSYQYYLALSPA------DGHLYISDA-- 241 (770)
Q Consensus 177 ~~l~~P~~la~~~dG~lyv~d~--~~I~~i~~~G-~v~~~~~~~----~~~~~~p~~lav~p~------~g~lyvsd~-- 241 (770)
..|..|++|++.|||+|||++. ++|+++++++ ....+..+. ......+.+||++|. ++.|||+-+
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 4688999999999999999996 7999998654 333333322 113566899999974 357999842
Q ss_pred -------CCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--
Q psy4832 242 -------EKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-- 312 (770)
Q Consensus 242 -------~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-- 312 (770)
...+|.|+..............++.+.... ..++-..|+++++|.|||+-+..
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~------------------~~H~GgrI~FgPDG~LYVs~GD~g~ 168 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAG------------------NDHNGGRLVFGPDGKIYYTIGEQGR 168 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCC------------------CCcCCceEEECCCCcEEEEECCCCC
Confidence 246788875421100111112233221110 01234578999999999973221
Q ss_pred -e-----EE-----------------ECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEE
Q psy4832 313 -I-----RV-----------------VSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFI 369 (770)
Q Consensus 313 -I-----r~-----------------id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~ 369 (770)
- +. -+..|+|.++--.+.... -.|+..+.....-...+++|.+|+++| +|.||++
T Consensus 169 ~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~-dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~ 246 (454)
T TIGR03606 169 NQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPK-DNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYAS 246 (454)
T ss_pred CCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCC-CCCccCCCcceEEEEeccccceeEECC-CCCEEEE
Confidence 0 00 012344544432221100 011110000122345689999999999 9999999
Q ss_pred eC-----CEEEEEcCC
Q psy4832 370 DD-----RVIFKLTND 380 (770)
Q Consensus 370 D~-----~~I~~i~~~ 380 (770)
|. ..|-+|.+.
T Consensus 247 e~Gp~~~DEiN~I~~G 262 (454)
T TIGR03606 247 EQGPNSDDELNIIVKG 262 (454)
T ss_pred ecCCCCCcEEEEeccC
Confidence 93 356666543
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG1520|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.4e-09 Score=109.55 Aligned_cols=156 Identities=18% Similarity=0.217 Sum_probs=100.1
Q ss_pred cccCcceEEEccCC-cEEEEeCCC-eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEE
Q psy4832 290 KLSHPKGLAIKADK-TMFIADGTN-IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLH 367 (770)
Q Consensus 290 ~l~~P~gIavd~~G-~lYvaD~~~-Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~ly 367 (770)
..-.|-||++++.| +|||||+.- +.+|+++|...+..-.... ...+...+++.|++ +|.||
T Consensus 113 ~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~----------------G~~~kf~N~ldI~~-~g~vy 175 (376)
T KOG1520|consen 113 LCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAE----------------GKPFKFLNDLDIDP-EGVVY 175 (376)
T ss_pred ccCCcceEEeccCCCeEEEEecceeeEEECCCCCcceecccccc----------------CeeeeecCceeEcC-CCeEE
Confidence 33479999999977 899999988 9999999876554433221 23577788999999 99999
Q ss_pred EEeCCE----------EEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcC
Q psy4832 368 FIDDRV----------IFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSP 437 (770)
Q Consensus 368 v~D~~~----------I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~ 437 (770)
|+|+.. +..-+++|++...--. ++. ..-....|..|+||++++
T Consensus 176 FTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~-------------tK~--------------~~VLld~L~F~NGlaLS~ 228 (376)
T KOG1520|consen 176 FTDSSSKYDRRDFVFAALEGDPTGRLFRYDPS-------------TKV--------------TKVLLDGLYFPNGLALSP 228 (376)
T ss_pred EeccccccchhheEEeeecCCCccceEEecCc-------------ccc--------------hhhhhhcccccccccCCC
Confidence 999421 1111133332221100 000 001234578899999999
Q ss_pred CCC-EEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEE
Q psy4832 438 TGD-LYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVN 515 (770)
Q Consensus 438 ~G~-lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~ly 515 (770)
++. +.++|+...||+|++.-.+ -|+...++- + . -..|..|..+++|..|
T Consensus 229 d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~-~----------------------L------PG~PDNIR~~~~G~fW 279 (376)
T KOG1520|consen 229 DGSFVLVAETTTARIKRYWIKGPKAGTSEVFAE-G----------------------L------PGYPDNIRRDSTGHFW 279 (376)
T ss_pred CCCEEEEEeeccceeeeeEecCCccCchhhHhh-c----------------------C------CCCCcceeECCCCCEE
Confidence 987 8889998887666654322 222222221 0 0 1348889999999999
Q ss_pred EEc
Q psy4832 516 VAD 518 (770)
Q Consensus 516 vaD 518 (770)
|+=
T Consensus 280 Val 282 (376)
T KOG1520|consen 280 VAL 282 (376)
T ss_pred EEE
Confidence 984
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-06 Score=88.45 Aligned_cols=261 Identities=16% Similarity=0.196 Sum_probs=155.3
Q ss_pred ccccccccCceEEEEcCCC-CEEEEeC----c--eEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCc
Q psy4832 173 VARDARLLTPVALTSGPDG-SLYVGDF----N--LVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKH 244 (770)
Q Consensus 173 ~~~~~~l~~P~~la~~~dG-~lyv~d~----~--~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~ 244 (770)
......+.+|.-|++++++ .||+... + .-.+||++ |+.+-+ ......-..|.++++|+.+..||++....+
T Consensus 33 ~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l-n~~~~~g~~p~yvsvd~~g~~vf~AnY~~g 111 (346)
T COG2706 33 LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL-NRQTLPGSPPCYVSVDEDGRFVFVANYHSG 111 (346)
T ss_pred hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe-eccccCCCCCeEEEECCCCCEEEEEEccCc
Confidence 3345677899999999988 6898754 2 45677876 665543 322334456799999985558999999888
Q ss_pred EEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEECC-CC
Q psy4832 245 QILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVSP-EG 320 (770)
Q Consensus 245 ~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id~-~G 320 (770)
.|.++.. ..+|.+..+.+.-.. .|.+ +-.+..-.+++..-++|+|+ |++.|-+. |..++. +|
T Consensus 112 ~v~v~p~-----~~dG~l~~~v~~~~h--------~g~~-p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg 177 (346)
T COG2706 112 SVSVYPL-----QADGSLQPVVQVVKH--------TGSG-PHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDG 177 (346)
T ss_pred eEEEEEc-----ccCCccccceeeeec--------CCCC-CCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccC
Confidence 8877643 334554333221111 1111 11111122467788899985 77778654 544432 67
Q ss_pred cEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe--CCEEEEEc--CC-CcEEEEe---cCCC
Q psy4832 321 IIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID--DRVIFKLT--ND-LKVKIVA---GIPL 391 (770)
Q Consensus 321 ~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D--~~~I~~i~--~~-G~v~~va---G~~~ 391 (770)
++......... .=.-|.-|+|.| ++. .|+.. ++.|..+. +. |++..+- -.|.
T Consensus 178 ~L~~~~~~~v~------------------~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 178 KLTPADPAEVK------------------PGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred ccccccccccC------------------CCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence 65443211100 011488999999 776 68776 67665555 42 5544332 2222
Q ss_pred CCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcCCCc-EEEeecC
Q psy4832 392 HCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDSTGR-MFDFAGR 469 (770)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~~G~-i~~~aG~ 469 (770)
.. ..-.....|.++++|+ ||+++.+-+.| .+-.+++++. +.++.-.
T Consensus 239 dF-------------------------------~g~~~~aaIhis~dGrFLYasNRg~dsI-~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 239 DF-------------------------------TGTNWAAAIHISPDGRFLYASNRGHDSI-AVFSVDPDGGKLELVGIT 286 (346)
T ss_pred cc-------------------------------CCCCceeEEEECCCCCEEEEecCCCCeE-EEEEEcCCCCEEEEEEEe
Confidence 11 1123457899999998 99999887765 5667888754 4444322
Q ss_pred ccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEE-EcCCCceEEe
Q psy4832 470 WQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNV-ADQGSLHILA 526 (770)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyv-aD~~~~~I~~ 526 (770)
... -..|.+..+++.|.+.| +.+.+..|..
T Consensus 287 ~te---------------------------g~~PR~F~i~~~g~~Liaa~q~sd~i~v 317 (346)
T COG2706 287 PTE---------------------------GQFPRDFNINPSGRFLIAANQKSDNITV 317 (346)
T ss_pred ccC---------------------------CcCCccceeCCCCCEEEEEccCCCcEEE
Confidence 211 23488899999887654 5444443433
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-07 Score=99.45 Aligned_cols=235 Identities=19% Similarity=0.225 Sum_probs=123.4
Q ss_pred ccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcE-EEEECCCccccCCCCCCcCCCcccccccccCcceEEE
Q psy4832 221 VSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINW-EVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI 299 (770)
Q Consensus 221 ~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~-~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIav 299 (770)
|..|..|++.| +|.|||++. .++|+.+. .+|.. ..+...... .+ .....+.|||+
T Consensus 1 L~~P~~~a~~p-dG~l~v~e~-~G~i~~~~-------~~g~~~~~v~~~~~v-------~~--------~~~~gllgia~ 56 (331)
T PF07995_consen 1 LNNPRSMAFLP-DGRLLVAER-SGRIWVVD-------KDGSLKTPVADLPEV-------FA--------DGERGLLGIAF 56 (331)
T ss_dssp ESSEEEEEEET-TSCEEEEET-TTEEEEEE-------TTTEECEEEEE-TTT-------BT--------STTBSEEEEEE
T ss_pred CCCceEEEEeC-CCcEEEEeC-CceEEEEe-------CCCcCcceecccccc-------cc--------cccCCccccee
Confidence 46799999998 799999998 79999994 44554 333322111 00 11235789999
Q ss_pred ccC----CcEEEEeCC----------CeEEECC-CC--c---EEEeecCCCCCCCcCCCccCCCcccccccccCcceEEE
Q psy4832 300 KAD----KTMFIADGT----------NIRVVSP-EG--I---IHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLAL 359 (770)
Q Consensus 300 d~~----G~lYvaD~~----------~Ir~id~-~G--~---i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~ 359 (770)
+++ +.||++-+. .|.++.. ++ . ...++-. .+.......+-..|++
T Consensus 57 ~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~---------------~p~~~~~~H~g~~l~f 121 (331)
T PF07995_consen 57 HPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTG---------------LPDTSSGNHNGGGLAF 121 (331)
T ss_dssp -TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEE---------------EES-CSSSS-EEEEEE
T ss_pred ccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEE---------------eCCCCCCCCCCccccC
Confidence 984 889988652 1444322 11 1 1112110 0000112334567999
Q ss_pred eCCCCeEEEEe---------------CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccc
Q psy4832 360 SPLDDSLHFID---------------DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASN 424 (770)
Q Consensus 360 d~~~g~lyv~D---------------~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 424 (770)
+| +|.|||+- .++|+||+++|++ ....|.... .+ .......
T Consensus 122 gp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~--p~dnP~~~~---~~------------------~~~~i~A 177 (331)
T PF07995_consen 122 GP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSI--PADNPFVGD---DG------------------ADSEIYA 177 (331)
T ss_dssp -T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB---TTSTTTTS---TT------------------STTTEEE
T ss_pred CC-CCcEEEEeCCCCCcccccccccccceEEEecccCcC--CCCCccccC---CC------------------ceEEEEE
Confidence 99 99999984 1579999998852 122222100 00 0001123
Q ss_pred cccCCeeEEEEcCC-CCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCC---------CcccccCccCccc
Q psy4832 425 MDLGSLTALAFSPT-GDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTN---------CAEFEKNSKETLL 494 (770)
Q Consensus 425 ~~l~~P~giavd~~-G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~---------~~~~~~~~~d~~~ 494 (770)
..|.+|.+++++|. |+||++|.+......|..+.+.+. .| -+.|.-.. +.+... ......
T Consensus 178 ~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~n----YG-----WP~~~~~~~~~~~~~~~~~~~~~-~~~P~~ 247 (331)
T PF07995_consen 178 YGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGN----YG-----WPYCEGGPKYSGPPIGDAPSCPG-FVPPVF 247 (331)
T ss_dssp E--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B-----------TTTBSSSCSTTSS-ECTGSS-TT-S---SE
T ss_pred eCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCc----CC-----CCCCcCCCCCCCCccccccCCCC-cCccce
Confidence 45889999999998 999999987655445555433221 12 12222110 000000 001111
Q ss_pred ccceecCCeeEEEEcC-------CCcEEEEcCCCceEEeeec
Q psy4832 495 TSTARFTSISALSVSP-------DGVVNVADQGSLHILALQH 529 (770)
Q Consensus 495 ~~~~~l~~P~giav~~-------dG~lyvaD~~~~~I~~i~~ 529 (770)
.-.+ -.+|.|+++-. .|.+++++.+..+|+++..
T Consensus 248 ~~~~-~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~ 288 (331)
T PF07995_consen 248 AYPP-HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDL 288 (331)
T ss_dssp EETT-T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEE
T ss_pred eecC-ccccCceEEECCccCccccCcEEEecCCCCEEEEEee
Confidence 0000 14699999863 5689999999889988754
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.7e-07 Score=91.30 Aligned_cols=215 Identities=18% Similarity=0.312 Sum_probs=135.1
Q ss_pred cCceEEEEcCCCC-EEEEeCc----eEEEEcCCCcEEEEeccC----c-----ccccceeEEEEeCCCCcEEEEeCCCcE
Q psy4832 180 LTPVALTSGPDGS-LYVGDFN----LVRRLTPEGNVFTVLQLS----A-----TQVSYQYYLALSPADGHLYISDAEKHQ 245 (770)
Q Consensus 180 ~~P~~la~~~dG~-lyv~d~~----~I~~i~~~G~v~~~~~~~----~-----~~~~~p~~lav~p~~g~lyvsd~~~~~ 245 (770)
..|..|++|++|. ||++..+ .+..+..+|.+..+.... . ..-.++...-++|....|++.|-+..|
T Consensus 89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr 168 (346)
T COG2706 89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR 168 (346)
T ss_pred CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce
Confidence 3469999999995 7777774 566667788876553321 1 112346678889966789999999999
Q ss_pred EEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC----eEEECCC-
Q psy4832 246 ILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN----IRVVSPE- 319 (770)
Q Consensus 246 I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~----Ir~id~~- 319 (770)
|..++.. +|.++...-. ...| | ..|+-|+|+|+|. .|+..--+ ++.+++.
T Consensus 169 i~~y~~~------dg~L~~~~~~--~v~~------G----------~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~ 224 (346)
T COG2706 169 IFLYDLD------DGKLTPADPA--EVKP------G----------AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV 224 (346)
T ss_pred EEEEEcc------cCcccccccc--ccCC------C----------CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC
Confidence 9888642 3433221100 0001 1 2599999999998 77765333 5566664
Q ss_pred CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEeC--C--EEEEEcCCCc-EEEEecCCCCC
Q psy4832 320 GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFIDD--R--VIFKLTNDLK-VKIVAGIPLHC 393 (770)
Q Consensus 320 G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D~--~--~I~~i~~~G~-v~~vaG~~~~~ 393 (770)
|++..+--... ++..-..-+|-..|.+++ +|+ ||+++. + .+++|++++. +..+.-.+.+.
T Consensus 225 g~~~~lQ~i~t-------------lP~dF~g~~~~aaIhis~-dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg 290 (346)
T COG2706 225 GKFEELQTIDT-------------LPEDFTGTNWAAAIHISP-DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEG 290 (346)
T ss_pred ceEEEeeeecc-------------CccccCCCCceeEEEECC-CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCC
Confidence 66655432211 122222345778899999 775 899983 2 5788888854 44444333322
Q ss_pred CCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEc-CCCcEEEee
Q psy4832 394 RTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVID-STGRMFDFA 467 (770)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~-~~G~i~~~a 467 (770)
..|++..++++|+ |++|-.++..| .+..+| .+|+++.+.
T Consensus 291 ----------------------------------~~PR~F~i~~~g~~Liaa~q~sd~i-~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 291 ----------------------------------QFPRDFNINPSGRFLIAANQKSDNI-TVFERDKETGRLTLLG 331 (346)
T ss_pred ----------------------------------cCCccceeCCCCCEEEEEccCCCcE-EEEEEcCCCceEEecc
Confidence 3499999999988 66666666655 344555 478876553
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.7e-07 Score=91.94 Aligned_cols=208 Identities=18% Similarity=0.268 Sum_probs=111.6
Q ss_pred ccCceEEEEcCC-CCEEEEeC--ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCc
Q psy4832 179 LLTPVALTSGPD-GSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESV 255 (770)
Q Consensus 179 l~~P~~la~~~d-G~lyv~d~--~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~ 255 (770)
...+.||+++|+ +.||.... ..|..++.+|++...+.. .++.-+.+|++- .++.+.+++-..+++..+......
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l--~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPL--DGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE---SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE----
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeC--CCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEeccc
Confidence 446899999996 56776544 489999999999877653 347789999998 477888888778888888542110
Q ss_pred cCCCC-cEEEE-ECCCccccCCCCCCcCCCcccccccccCcceEEEccC-CcEEEEeCCC---eEEECC--CC-cEEEee
Q psy4832 256 ADPSI-NWEVA-VGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKAD-KTMFIADGTN---IRVVSP--EG-IIHTLI 326 (770)
Q Consensus 256 ~~~~g-~~~~v-aG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~-G~lYvaD~~~---Ir~id~--~G-~i~t~~ 326 (770)
...+. .+..+ .+.... ++ ..-.|||.|+. +.||++.-.. |..++. .+ .+....
T Consensus 98 ~~~~~~~~~~~~l~~~~~------~N------------~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNK------GN------------KGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp TT--EEEEEEEE---S---------S------------S--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred cccchhhceEEecccccC------CC------------cceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence 00000 01111 111000 00 12469999995 5688885443 555543 11 111111
Q ss_pred cCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCcccc
Q psy4832 327 GHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFK 404 (770)
Q Consensus 327 g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~ 404 (770)
... .......+.-|.+|+++|.+|.|||.. +++|..++.+|++....-...
T Consensus 160 ~~~--------------~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~------------- 212 (248)
T PF06977_consen 160 DQD--------------LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDR------------- 212 (248)
T ss_dssp -HH--------------HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-ST-------------
T ss_pred ccc--------------cccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCC-------------
Confidence 000 011123455799999999899999987 689999999998654332110
Q ss_pred ccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCC
Q psy4832 405 DKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDA 448 (770)
Q Consensus 405 ~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~ 448 (770)
+..+....+.+|.|||+|++|+|||+..-|
T Consensus 213 --------------g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN 242 (248)
T PF06977_consen 213 --------------GFHGLSKDIPQPEGIAFDPDGNLYIVSEPN 242 (248)
T ss_dssp --------------TGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred --------------cccCcccccCCccEEEECCCCCEEEEcCCc
Confidence 001123457789999999999999998765
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.3e-07 Score=96.55 Aligned_cols=288 Identities=19% Similarity=0.155 Sum_probs=151.9
Q ss_pred ccccccccCceEEEEcCCCCEEEEeC--ceEEEEcCCCcE--------EEEecc------------CcccccceeEEEEe
Q psy4832 173 VARDARLLTPVALTSGPDGSLYVGDF--NLVRRLTPEGNV--------FTVLQL------------SATQVSYQYYLALS 230 (770)
Q Consensus 173 ~~~~~~l~~P~~la~~~dG~lyv~d~--~~I~~i~~~G~v--------~~~~~~------------~~~~~~~p~~lav~ 230 (770)
......|..|++++..|+|.+.|... .+++.+...+.. ...... -+.++..|.+++..
T Consensus 60 ~~~a~gLe~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~a~~ 139 (399)
T COG2133 60 EVVAQGLEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGISEP 139 (399)
T ss_pred ccccccccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeeeEEEee
Confidence 33455689999999999997767665 467766432211 111111 03456778888886
Q ss_pred CCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeC
Q psy4832 231 PADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADG 310 (770)
Q Consensus 231 p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~ 310 (770)
.+.+|++... .+.++. .... ...+.-.++..... .. .++-..|+++++|.|||+=+
T Consensus 140 --~~~~~~~n~~--~~~~~~-~g~~-~l~~~~~i~~~lP~----------------~~--~H~g~~l~f~pDG~Lyvs~G 195 (399)
T COG2133 140 --GGGLYVANRV--AIGRLP-GGDT-KLSEPKVIFRGIPK----------------GG--HHFGGRLVFGPDGKLYVTTG 195 (399)
T ss_pred --cCCceEEEEE--EEEEcC-CCcc-ccccccEEeecCCC----------------CC--CcCcccEEECCCCcEEEEeC
Confidence 6778887653 455553 1100 11122222322111 00 33456899999999999843
Q ss_pred CC---------------eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeCCEEE
Q psy4832 311 TN---------------IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIF 375 (770)
Q Consensus 311 ~~---------------Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~~~I~ 375 (770)
.+ |.+++.++.+..-. ...........+++|.|++++|.+|.||++|+.+=.
T Consensus 196 ~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~-------------p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~ 262 (399)
T COG2133 196 SNGDPALAQDNVSLAGKVLRIDRAGIIPADN-------------PFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDA 262 (399)
T ss_pred CCCCcccccCccccccceeeeccCcccccCC-------------CCCCcceEEeccCCccceeecCCCCcEEEEecCCCc
Confidence 22 22333333221100 001122334568899999999977999999975400
Q ss_pred EEcCCCcEE----EEecCCCCCCCCCCC-CccccccccccccccccCCcccccccccCCeeEEEEcCC-------CCEEE
Q psy4832 376 KLTNDLKVK----IVAGIPLHCRTGDKD-KRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPT-------GDLYI 443 (770)
Q Consensus 376 ~i~~~G~v~----~vaG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~-------G~lyV 443 (770)
.+-+|-.-. ...|.|.... +... +....+ ...... ..........-..|.||+|-.. |.|||
T Consensus 263 ~~~~Deln~i~~G~nYGWP~~~~-G~~~~g~~~~~---~~~~~~--~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV 336 (399)
T COG2133 263 LRGPDELNSIRPGKNYGWPYAYF-GQNYDGRAIPD---GTVVAG--AIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFV 336 (399)
T ss_pred ccCcccccccccCCccCCceecc-CcccCccccCC---Cccccc--ccCCceeeccccccceeEEecCCcCccccCcEEE
Confidence 011221100 1233333221 1000 000000 000000 0000011122245799999632 68999
Q ss_pred EeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCC-Cc
Q psy4832 444 ADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQG-SL 522 (770)
Q Consensus 444 aD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~-~~ 522 (770)
+...+..+ ....++|....+...- +.... -.+|.+|++.+||.|||+|.. ++
T Consensus 337 ~~hgsw~~---~~~~~~g~~~~~~~~f-----------------------l~~d~-~gR~~dV~v~~DGallv~~D~~~g 389 (399)
T COG2133 337 GAHGSWPV---LRLRPDGNYKVVLTGF-----------------------LSGDL-GGRPRDVAVAPDGALLVLTDQGDG 389 (399)
T ss_pred EeecceeE---EEeccCCCcceEEEEE-----------------------EecCC-CCcccceEECCCCeEEEeecCCCC
Confidence 99998753 3466777643332111 00000 157999999999999998765 77
Q ss_pred eEEeeecC
Q psy4832 523 HILALQHY 530 (770)
Q Consensus 523 ~I~~i~~~ 530 (770)
+|+|+...
T Consensus 390 ~i~Rv~~~ 397 (399)
T COG2133 390 RILRVSYA 397 (399)
T ss_pred eEEEecCC
Confidence 99999754
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-06 Score=90.15 Aligned_cols=209 Identities=14% Similarity=0.259 Sum_probs=109.9
Q ss_pred ccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEc
Q psy4832 221 VSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300 (770)
Q Consensus 221 ~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd 300 (770)
...+.||+++|.++.||...-....|+.+ +.+|.+..-.-. .| +..|.||++-
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~el-------s~~G~vlr~i~l-----------~g---------~~D~EgI~y~ 73 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYEL-------SLDGKVLRRIPL-----------DG---------FGDYEGITYL 73 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEE-------ETT--EEEEEE------------SS----------SSEEEEEE-
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEE-------cCCCCEEEEEeC-----------CC---------CCCceeEEEE
Confidence 34589999999889999888888999999 456665332210 01 3468999998
Q ss_pred cCCcEEEEeCCC--eEEEC--CCCc-EEE-----e-ecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEE
Q psy4832 301 ADKTMFIADGTN--IRVVS--PEGI-IHT-----L-IGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFI 369 (770)
Q Consensus 301 ~~G~lYvaD~~~--Ir~id--~~G~-i~t-----~-~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~ 369 (770)
.+|.+.+++-.. +..++ .++. +.. + .+... ..=..-.|||+|+.++.||++
T Consensus 74 g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~------------------~~N~G~EGla~D~~~~~L~v~ 135 (248)
T PF06977_consen 74 GNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPN------------------KGNKGFEGLAYDPKTNRLFVA 135 (248)
T ss_dssp STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---------------------SS--EEEEEETTTTEEEEE
T ss_pred CCCEEEEEEcCCCcEEEEEEeccccccchhhceEEeccccc------------------CCCcceEEEEEcCCCCEEEEE
Confidence 777777777432 54443 3321 111 1 11110 001124799999977889998
Q ss_pred e---CCEEEEEcC--C-CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcC-CCCEE
Q psy4832 370 D---DRVIFKLTN--D-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSP-TGDLY 442 (770)
Q Consensus 370 D---~~~I~~i~~--~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~-~G~ly 442 (770)
- ..+|+.+.. . ..+....... .......+..|++|+++| .|.||
T Consensus 136 kE~~P~~l~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~d~S~l~~~p~t~~ll 186 (248)
T PF06977_consen 136 KERKPKRLYEVNGFPGGFDLFVSDDQD-----------------------------LDDDKLFVRDLSGLSYDPRTGHLL 186 (248)
T ss_dssp EESSSEEEEEEESTT-SS--EEEE-HH-----------------------------HH-HT--SS---EEEEETTTTEEE
T ss_pred eCCCChhhEEEccccCccceeeccccc-----------------------------cccccceeccccceEEcCCCCeEE
Confidence 6 235666653 1 1111111100 000122355699999998 68899
Q ss_pred EEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCc
Q psy4832 443 IADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSL 522 (770)
Q Consensus 443 VaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~ 522 (770)
|....+++ +-.+|.+|++....--. .+.......+..|.|||++++|+|||+.--|
T Consensus 187 iLS~es~~---l~~~d~~G~~~~~~~L~--------------------~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN- 242 (248)
T PF06977_consen 187 ILSDESRL---LLELDRQGRVVSSLSLD--------------------RGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN- 242 (248)
T ss_dssp EEETTTTE---EEEE-TT--EEEEEE-S--------------------TTGGG-SS---SEEEEEE-TT--EEEEETTT-
T ss_pred EEECCCCe---EEEECCCCCEEEEEEeC--------------------CcccCcccccCCccEEEECCCCCEEEEcCCc-
Confidence 99988875 67888999875443111 0011223357789999999999999987655
Q ss_pred eEEee
Q psy4832 523 HILAL 527 (770)
Q Consensus 523 ~I~~i 527 (770)
+.+++
T Consensus 243 lfy~f 247 (248)
T PF06977_consen 243 LFYRF 247 (248)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 44443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.4e-05 Score=84.51 Aligned_cols=32 Identities=25% Similarity=0.481 Sum_probs=28.3
Q ss_pred cccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 218 ATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 218 ~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
+..|..|.+|++.| +|+|||++...++|++++
T Consensus 26 a~GL~~Pw~maflP-DG~llVtER~~G~I~~v~ 57 (454)
T TIGR03606 26 LSGLNKPWALLWGP-DNQLWVTERATGKILRVN 57 (454)
T ss_pred ECCCCCceEEEEcC-CCeEEEEEecCCEEEEEe
Confidence 45789999999998 899999998778999995
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00011 Score=77.73 Aligned_cols=230 Identities=17% Similarity=0.193 Sum_probs=130.3
Q ss_pred CceEEEEcCCCC-EEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCcc
Q psy4832 181 TPVALTSGPDGS-LYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVA 256 (770)
Q Consensus 181 ~P~~la~~~dG~-lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~ 256 (770)
.|.+++++|+|. +|++.. +.|+.++.. ++....+.. ...+..++++|.+..+|++....++|..++..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~---- 103 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS----GPDPELFALHPNGKILYIANEDDNLVTVIDIE---- 103 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC----CCCccEEEECCCCCEEEEEcCCCCeEEEEECC----
Confidence 367899999987 567654 588888854 555544321 12367889998666688887777788887421
Q ss_pred CCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC--C-eEEECCC-CcEEEeecCCCCC
Q psy4832 257 DPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT--N-IRVVSPE-GIIHTLIGHHKHH 332 (770)
Q Consensus 257 ~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~--~-Ir~id~~-G~i~t~~g~~~~~ 332 (770)
++........ -..|.+++++++|.++++... + +..++.. +.+......
T Consensus 104 --~~~~~~~~~~----------------------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~---- 155 (300)
T TIGR03866 104 --TRKVLAEIPV----------------------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV---- 155 (300)
T ss_pred --CCeEEeEeeC----------------------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc----
Confidence 1111111100 114788999999986654332 2 5555643 332211110
Q ss_pred CCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe--CCEEEEEcCC-CcE-EEEecCCCCCCCCCCCCccccccc
Q psy4832 333 NIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID--DRVIFKLTND-LKV-KIVAGIPLHCRTGDKDKRDFKDKQ 407 (770)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D--~~~I~~i~~~-G~v-~~vaG~~~~~~~~~~~~~~~~~~~ 407 (770)
-..|..+++++ ++. ||++. .+.|..++.. ++. ..+..... .
T Consensus 156 ------------------~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~-~-------------- 201 (300)
T TIGR03866 156 ------------------DQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP-G-------------- 201 (300)
T ss_pred ------------------CCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc-c--------------
Confidence 11467899998 665 65653 4678888743 432 22211000 0
Q ss_pred cccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCccc
Q psy4832 408 SKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEF 485 (770)
Q Consensus 408 ~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~ 485 (770)
....-..|.+++++++|. +|++...+++ +..++. ++++......
T Consensus 202 ---------------~~~~~~~~~~i~~s~dg~~~~~~~~~~~~---i~v~d~~~~~~~~~~~~---------------- 247 (300)
T TIGR03866 202 ---------------VHPEAVQPVGIKLTKDGKTAFVALGPANR---VAVVDAKTYEVLDYLLV---------------- 247 (300)
T ss_pred ---------------cccccCCccceEECCCCCEEEEEcCCCCe---EEEEECCCCcEEEEEEe----------------
Confidence 000113478899999988 5887766654 455554 4444322210
Q ss_pred ccCccCcccccceecCCeeEEEEcCCCc-EEEEcCCCceEEeee
Q psy4832 486 EKNSKETLLTSTARFTSISALSVSPDGV-VNVADQGSLHILALQ 528 (770)
Q Consensus 486 ~~~~~d~~~~~~~~l~~P~giav~~dG~-lyvaD~~~~~I~~i~ 528 (770)
-..|.+++++|+|. ||++....+.|..++
T Consensus 248 --------------~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 248 --------------GQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred --------------CCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 12367899999886 455554455555443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF03527 RHS: RHS protein; InterPro: IPR001826 RHS elements are proteins of non-essential function believed to play an important role in the natural ecology of the cell | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.1e-09 Score=72.87 Aligned_cols=39 Identities=28% Similarity=0.573 Sum_probs=36.9
Q ss_pred EEEEeCCCCCeEEEEcCCCCEEEEEEeCCCCceEEecCC
Q psy4832 716 YYIATDQCGTPVMVFNQYGETVREIMRSPYGHIVYDSNP 754 (770)
Q Consensus 716 ~~~~~d~~G~~~~~~d~~G~~v~~~~yd~~G~~~~~~~~ 754 (770)
++|++|+.|+|.+++|++|++||+.+|++||+++.++.|
T Consensus 2 ~~yH~D~~GtP~~ltd~~G~~vW~a~y~~wG~~~~e~~~ 40 (41)
T PF03527_consen 2 YYYHTDHLGTPQELTDEDGNIVWRAEYDAWGNVLEETSP 40 (41)
T ss_pred eEEecCCCCCcHHHHHhcCceEEEEeechhhCcchhccC
Confidence 689999999999999999999999999999999988776
|
The protein sequences comprise highly conserved 141 kDa domain containing multiple tandem 22-residue repeats, followed by divergent C-terminal domains [, ]. The 22 residue repeats contain a YD dipeptide which is the most strongly conserved motif of the repeat. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.6e-05 Score=79.11 Aligned_cols=199 Identities=21% Similarity=0.243 Sum_probs=128.4
Q ss_pred ceEEEEcCCCCEEEEeCc---eEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC
Q psy4832 182 PVALTSGPDGSLYVGDFN---LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP 258 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~~---~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~ 258 (770)
-.+++++|+-+-.++-.| .|..++.+|.+...+.+ ..+..|.+|+.- .+|..-++|...++++++.. ++
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL--~g~~DpE~Ieyi-g~n~fvi~dER~~~l~~~~v-----d~ 159 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL--TGFSDPETIEYI-GGNQFVIVDERDRALYLFTV-----DA 159 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc--cccCChhHeEEe-cCCEEEEEehhcceEEEEEE-----cC
Confidence 567899997654444443 89999999999988864 458899999998 47777778888888888865 44
Q ss_pred CCcEEEEE------CCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC---eEEECCCC-cEEEeec
Q psy4832 259 SINWEVAV------GSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN---IRVVSPEG-IIHTLIG 327 (770)
Q Consensus 259 ~g~~~~va------G~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~---Ir~id~~G-~i~t~~g 327 (770)
++.+.... |.... .+|| -.|+|.|+ +..+||+--.+ |.+++..- .+..-+.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k------~N~G------------fEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~ 221 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNK------KNKG------------FEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHAS 221 (316)
T ss_pred CccEEeccceEEeccccCC------CCcC------------ceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccc
Confidence 44332221 11110 1232 35999998 55699987766 55554221 0100000
Q ss_pred CCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEE-Eec-CCCCCCCCCCCCccc
Q psy4832 328 HHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKI-VAG-IPLHCRTGDKDKRDF 403 (770)
Q Consensus 328 ~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~-vaG-~~~~~~~~~~~~~~~ 403 (770)
.. -....+..+.--.|+.+++..+.|+|.. ++++..++.+|.+.- +.- .+.++
T Consensus 222 ~~-------------~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~g---------- 278 (316)
T COG3204 222 LD-------------PTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHG---------- 278 (316)
T ss_pred cC-------------cccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCC----------
Confidence 00 0011123355678999998788888865 789999999998532 221 11111
Q ss_pred cccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCC
Q psy4832 404 KDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDA 448 (770)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~ 448 (770)
....+.+|.|||+|.+|+|||+..-|
T Consensus 279 -------------------L~~dipqaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 279 -------------------LSSDIPQAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred -------------------CcccCCCcceeEECCCCCEEEEecCC
Confidence 23345679999999999999998765
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.0012 Score=69.55 Aligned_cols=220 Identities=15% Similarity=0.150 Sum_probs=119.6
Q ss_pred CCEEEEeC--ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEEC
Q psy4832 191 GSLYVGDF--NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVG 267 (770)
Q Consensus 191 G~lyv~d~--~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG 267 (770)
+++|++.. +.|++++. +++....+.. ...|.+++++|.+..+|++....+.|+.++. .++......-
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~----~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~------~~~~~~~~~~ 70 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPV----GQRPRGITLSKDGKLLYVCASDSDTIQVIDL------ATGEVIGTLP 70 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEEC----CCCCCceEECCCCCEEEEEECCCCeEEEEEC------CCCcEEEecc
Confidence 35666654 47777775 4665555432 1346789999855568888887888888852 1233221110
Q ss_pred CCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCC--CeEEECCCC-cEEEeecCCCCCCCcCCCccCCC
Q psy4832 268 SGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGT--NIRVVSPEG-IIHTLIGHHKHHNIWSPFNCHRS 343 (770)
Q Consensus 268 ~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~--~Ir~id~~G-~i~t~~g~~~~~~~~~p~~~~~~ 343 (770)
. -..|..++++++|. +|++... .|+.+|... .....+..
T Consensus 71 ~----------------------~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--------------- 113 (300)
T TIGR03866 71 S----------------------GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV--------------- 113 (300)
T ss_pred C----------------------CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC---------------
Confidence 0 01356788998887 7776542 377777543 22111110
Q ss_pred cccccccccCcceEEEeCCCCeEEEE-eC--CEEEEEcCC-CcEEEEecCCCCCCCCCCCCccccccccccccccccCCc
Q psy4832 344 FPASTAQLQWPTGLALSPLDDSLHFI-DD--RVIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDS 419 (770)
Q Consensus 344 ~~~~~~~l~~P~gla~d~~~g~lyv~-D~--~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (770)
-..|.+++++| +|.++++ .. ..+..++.+ +++.....
T Consensus 114 -------~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~------------------------------- 154 (300)
T TIGR03866 114 -------GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL------------------------------- 154 (300)
T ss_pred -------CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE-------------------------------
Confidence 01377899999 7776554 32 345555533 22211110
Q ss_pred ccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcE-EEeecCccCCCCCcCCCCCcccccCccCccccc
Q psy4832 420 VRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRM-FDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTS 496 (770)
Q Consensus 420 ~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i-~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 496 (770)
.-..|..++++++|. ||++....++ |+.++. +++. ..+.... .+ .
T Consensus 155 ------~~~~~~~~~~s~dg~~l~~~~~~~~~---v~i~d~~~~~~~~~~~~~~-~~----------------------~ 202 (300)
T TIGR03866 155 ------VDQRPRFAEFTADGKELWVSSEIGGT---VSVIDVATRKVIKKITFEI-PG----------------------V 202 (300)
T ss_pred ------cCCCccEEEECCCCCEEEEEcCCCCE---EEEEEcCcceeeeeeeecc-cc----------------------c
Confidence 002367899999988 5455433443 555664 3432 2221100 00 0
Q ss_pred ceecCCeeEEEEcCCCcE-EEEcCCCceEEeee
Q psy4832 497 TARFTSISALSVSPDGVV-NVADQGSLHILALQ 528 (770)
Q Consensus 497 ~~~l~~P~giav~~dG~l-yvaD~~~~~I~~i~ 528 (770)
...-..|.+++++|+|.. |++...+++|..++
T Consensus 203 ~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d 235 (300)
T TIGR03866 203 HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVD 235 (300)
T ss_pred ccccCCccceEECCCCCEEEEEcCCCCeEEEEE
Confidence 000124778999999864 77766666666554
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00051 Score=73.98 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=66.0
Q ss_pred CCccEEecccC----CCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCC-EEEEeC-----------ceEE
Q psy4832 139 DGSSLHLKHEF----PRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGS-LYVGDF-----------NLVR 202 (770)
Q Consensus 139 dG~~~~~~~~~----~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~-lyv~d~-----------~~I~ 202 (770)
++.++|+.+.. .+.|+++.+...+. + +.-.. =..|.++ +.|||. |||+.. +.|.
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v-~------g~i~~--G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~ 80 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRV-L------GMTDG--GFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVE 80 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEE-E------EEEEc--cCCCcee-ECCCCCEEEEEeccccccccCCCCCEEE
Confidence 45567776633 26777776543221 0 00000 1368886 889875 999876 5788
Q ss_pred EEcC-CCcEEEEeccCcc----cccceeEEEEeCCCCcEEEEeCC-CcEEEEEec
Q psy4832 203 RLTP-EGNVFTVLQLSAT----QVSYQYYLALSPADGHLYISDAE-KHQILRVLS 251 (770)
Q Consensus 203 ~i~~-~G~v~~~~~~~~~----~~~~p~~lav~p~~g~lyvsd~~-~~~I~~i~~ 251 (770)
.+|. ++++..-+.++.. -...|..++++|.+..|||++.. .+.|-.++.
T Consensus 81 v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~ 135 (352)
T TIGR02658 81 VIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDL 135 (352)
T ss_pred EEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEEC
Confidence 9985 4666654444322 25677899999966689999976 788888863
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1520|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.3e-06 Score=86.42 Aligned_cols=152 Identities=20% Similarity=0.192 Sum_probs=108.9
Q ss_pred eeeecCCCeEEECCCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCCEEEEeC-------
Q psy4832 126 HHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDF------- 198 (770)
Q Consensus 126 ~~~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~------- 198 (770)
+.=-.|-||.....|..+|++| ..--+..|.+.|...... -..+....+....++.++++|.||++|+
T Consensus 112 ~~CGRPLGl~f~~~ggdL~VaD-AYlGL~~V~p~g~~a~~l----~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~r 186 (376)
T KOG1520|consen 112 PLCGRPLGIRFDKKGGDLYVAD-AYLGLLKVGPEGGLAELL----ADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRR 186 (376)
T ss_pred cccCCcceEEeccCCCeEEEEe-cceeeEEECCCCCcceec----cccccCeeeeecCceeEcCCCeEEEeccccccchh
Confidence 4445799999999888999999 555556666665543221 1123346677788999999999999985
Q ss_pred ------------ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEE
Q psy4832 199 ------------NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAV 266 (770)
Q Consensus 199 ------------~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~va 266 (770)
+|+.|+|+.-++++++ ..++..|+|++++|....+.++++...||.|+-..+ ..-|..++++
T Consensus 187 d~~~a~l~g~~~GRl~~YD~~tK~~~VL---ld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g---~k~gt~EvFa 260 (376)
T KOG1520|consen 187 DFVFAALEGDPTGRLFRYDPSTKVTKVL---LDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKG---PKAGTSEVFA 260 (376)
T ss_pred heEEeeecCCCccceEEecCcccchhhh---hhcccccccccCCCCCCEEEEEeeccceeeeeEecC---CccCchhhHh
Confidence 2566777766666665 568999999999998888999999999999985432 1122333333
Q ss_pred CCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEe
Q psy4832 267 GSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIAD 309 (770)
Q Consensus 267 G~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD 309 (770)
-. +| ..|.-|..+++|.+||+-
T Consensus 261 ~~----LP-----------------G~PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 261 EG----LP-----------------GYPDNIRRDSTGHFWVAL 282 (376)
T ss_pred hc----CC-----------------CCCcceeECCCCCEEEEE
Confidence 10 11 258899999999999986
|
|
| >TIGR01643 YD_repeat_2x YD repeat (two copies) | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.9e-06 Score=62.52 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=36.0
Q ss_pred cCceEEEEEecCCceEEEEEeCCCCEEEEEcCCCCEEEE
Q psy4832 635 TNDLKIRALKKGRFDVTYDYDHLDRLSVRKDNYGNITQF 673 (770)
Q Consensus 635 ~~g~l~~~~~~~g~~~~y~YD~~grlv~~~d~~G~~~~~ 673 (770)
..|+|+++++|+|.+++|.||+.|||++.++++|.+++|
T Consensus 3 ~~g~l~~~~~p~G~~~~~~YD~~Grl~~~tdp~g~~~~~ 41 (42)
T TIGR01643 3 AAGRLTGSTDADGTTTRYTYDAAGRLVEITDADGGSTRY 41 (42)
T ss_pred CCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEe
Confidence 368999999999999999999999999999999987776
|
This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00016 Score=76.39 Aligned_cols=198 Identities=17% Similarity=0.179 Sum_probs=116.7
Q ss_pred ceEEEEcCCCCEEEEeCc--------------eEEEEcC-CCcEEEEeccCcc---cccceeEEEEeCCC-----CcEEE
Q psy4832 182 PVALTSGPDGSLYVGDFN--------------LVRRLTP-EGNVFTVLQLSAT---QVSYQYYLALSPAD-----GHLYI 238 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~~--------------~I~~i~~-~G~v~~~~~~~~~---~~~~p~~lav~p~~-----g~lyv 238 (770)
..++.+|+.|.|||.|.+ +|..+|. ++++...+..+.. .-+.-..|++|... +.+||
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 568999999999999962 6888885 4667666554432 34566889999643 47999
Q ss_pred EeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCccccccccc---CcceEEEcc---CC-cEEEEeCC
Q psy4832 239 SDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLS---HPKGLAIKA---DK-TMFIADGT 311 (770)
Q Consensus 239 sd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~---~P~gIavd~---~G-~lYvaD~~ 311 (770)
+|.....|..++. .++....+...-..-.|....+. .++ ..|. ...||+..+ +| .||+..-.
T Consensus 83 tD~~~~glIV~dl------~~~~s~Rv~~~~~~~~p~~~~~~-i~g----~~~~~~dg~~gial~~~~~d~r~LYf~~ls 151 (287)
T PF03022_consen 83 TDSGGPGLIVYDL------ATGKSWRVLHNSFSPDPDAGPFT-IGG----ESFQWPDGIFGIALSPISPDGRWLYFHPLS 151 (287)
T ss_dssp EETTTCEEEEEET------TTTEEEEEETCGCTTS-SSEEEE-ETT----EEEEETTSEEEEEE-TTSTTS-EEEEEETT
T ss_pred eCCCcCcEEEEEc------cCCcEEEEecCCcceecccccee-ccC----ceEecCCCccccccCCCCCCccEEEEEeCC
Confidence 9999888888864 23333333322111000000000 001 1122 245678865 43 49998633
Q ss_pred --CeEEECC----CCcEEE---------eecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEE
Q psy4832 312 --NIRVVSP----EGIIHT---------LIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVI 374 (770)
Q Consensus 312 --~Ir~id~----~G~i~t---------~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I 374 (770)
+++++.. +..... .+|. +-....|+++|+ +|+||+++ .+.|
T Consensus 152 s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~---------------------k~~~s~g~~~D~-~G~ly~~~~~~~aI 209 (287)
T PF03022_consen 152 SRKLYRVPTSVLRDPSLSDAQALASQVQDLGD---------------------KGSQSDGMAIDP-NGNLYFTDVEQNAI 209 (287)
T ss_dssp -SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE------------------------SECEEEEET-TTEEEEEECCCTEE
T ss_pred CCcEEEEEHHHhhCccccccccccccceeccc---------------------cCCCCceEEECC-CCcEEEecCCCCeE
Confidence 2666642 221111 1111 012346899999 99999999 6899
Q ss_pred EEEcCCC-----cEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccc-cCCeeEEEEcC--CCCEEEEeC
Q psy4832 375 FKLTNDL-----KVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMD-LGSLTALAFSP--TGDLYIADI 446 (770)
Q Consensus 375 ~~i~~~G-----~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-l~~P~giavd~--~G~lyVaD~ 446 (770)
.+.++++ .+.+++- +.. |..|.++++++ +|.|||...
T Consensus 210 ~~w~~~~~~~~~~~~~l~~-----------------------------------d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 210 GCWDPDGPYTPENFEILAQ-----------------------------------DPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEEETTTSB-GCCEEEEEE------------------------------------CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred EEEeCCCCcCccchheeEE-----------------------------------cCceeeccceeeeccccCceEEEEEC
Confidence 9999988 5555552 233 78999999999 999999875
Q ss_pred C
Q psy4832 447 D 447 (770)
Q Consensus 447 ~ 447 (770)
.
T Consensus 255 r 255 (287)
T PF03022_consen 255 R 255 (287)
T ss_dssp S
T ss_pred c
Confidence 3
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00019 Score=75.71 Aligned_cols=212 Identities=20% Similarity=0.279 Sum_probs=117.8
Q ss_pred ceeEEEEeCCCCcEEEEeCCC------------cEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCccccccc
Q psy4832 223 YQYYLALSPADGHLYISDAEK------------HQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAK 290 (770)
Q Consensus 223 ~p~~lav~p~~g~lyvsd~~~------------~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~ 290 (770)
..+++.+|+ .|.|||.|.+. .+|..++.. ++.+....-...... ..
T Consensus 2 sV~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~------t~~li~~~~~p~~~~---------------~~ 59 (287)
T PF03022_consen 2 SVQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLK------TNQLIRRYPFPPDIA---------------PP 59 (287)
T ss_dssp -EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETT------TTCEEEEEE--CCCS----------------T
T ss_pred cccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECC------CCcEEEEEECChHHc---------------cc
Confidence 357889994 99999999874 377777532 222222111111100 01
Q ss_pred ccCcceEEEcc-C-----CcEEEEeCCC--eEEEC-CCCcEEEeecCCCCCCCcCCCccCCCcccccccccCc---ceEE
Q psy4832 291 LSHPKGLAIKA-D-----KTMFIADGTN--IRVVS-PEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWP---TGLA 358 (770)
Q Consensus 291 l~~P~gIavd~-~-----G~lYvaD~~~--Ir~id-~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P---~gla 358 (770)
-.....|+||. + +.+||+|... |.++| .+|+...+.... +.|.|+..........|.++ .||+
T Consensus 60 ~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~-----~~~~p~~~~~~i~g~~~~~~dg~~gia 134 (287)
T PF03022_consen 60 DSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNS-----FSPDPDAGPFTIGGESFQWPDGIFGIA 134 (287)
T ss_dssp CGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCG-----CTTS-SSEEEEETTEEEEETTSEEEEE
T ss_pred ccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCC-----cceeccccceeccCceEecCCCccccc
Confidence 22456788886 2 4699999886 88888 457777766542 33444433333333445554 4578
Q ss_pred EeCCC---CeEEEEe--CCEEEEEcC----CCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCC
Q psy4832 359 LSPLD---DSLHFID--DRVIFKLTN----DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGS 429 (770)
Q Consensus 359 ~d~~~---g~lyv~D--~~~I~~i~~----~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 429 (770)
++|.+ ..||+.- +..++++.. +.....-.- . ...+. ... .....
T Consensus 135 l~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~------------------~----~~~v~---~lG--~k~~~ 187 (287)
T PF03022_consen 135 LSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQA------------------L----ASQVQ---DLG--DKGSQ 187 (287)
T ss_dssp E-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-------------------H----HHT-E---EEE--E---S
T ss_pred cCCCCCCccEEEEEeCCCCcEEEEEHHHhhCcccccccc------------------c----cccce---ecc--ccCCC
Confidence 87633 3599987 467888762 111100000 0 00000 000 00124
Q ss_pred eeEEEEcCCCCEEEEeCCCCceeeEEEEcCCC-----cEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCee
Q psy4832 430 LTALAFSPTGDLYIADIDARKVNALRVIDSTG-----RMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSIS 504 (770)
Q Consensus 430 P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G-----~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~ 504 (770)
..|+++|++|+||+++...+. |...++++ .+.+++-.. -.|..|.
T Consensus 188 s~g~~~D~~G~ly~~~~~~~a---I~~w~~~~~~~~~~~~~l~~d~---------------------------~~l~~pd 237 (287)
T PF03022_consen 188 SDGMAIDPNGNLYFTDVEQNA---IGCWDPDGPYTPENFEILAQDP---------------------------RTLQWPD 237 (287)
T ss_dssp ECEEEEETTTEEEEEECCCTE---EEEEETTTSB-GCCEEEEEE-C---------------------------C-GSSEE
T ss_pred CceEEECCCCcEEEecCCCCe---EEEEeCCCCcCccchheeEEcC---------------------------ceeeccc
Confidence 589999999999999999875 67777877 455555211 2388899
Q ss_pred EEEEcC--CCcEEEEc
Q psy4832 505 ALSVSP--DGVVNVAD 518 (770)
Q Consensus 505 giav~~--dG~lyvaD 518 (770)
++++++ +|.||+.-
T Consensus 238 ~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 238 GLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEE-T--TS-EEEEE
T ss_pred eeeeccccCceEEEEE
Confidence 999999 99999975
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00066 Score=73.56 Aligned_cols=265 Identities=19% Similarity=0.248 Sum_probs=141.0
Q ss_pred eecCCCeEEECCCccEEecccCCCeEEEEeccCccCC-c------cCCCCCcc-------cccccccCceEEEEcCCCCE
Q psy4832 128 YNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRP-L------VCKDCDGV-------ARDARLLTPVALTSGPDGSL 193 (770)
Q Consensus 128 ~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~-~------~~~~~~g~-------~~~~~l~~P~~la~~~dG~l 193 (770)
|+.|.+++..+|| .+.+....++.+..+...+...+ . .....+|. .....+..|.+++. +.+.+
T Consensus 66 Le~p~~~~~lP~G-~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~a~-~~~~~ 143 (399)
T COG2133 66 LEHPWGLARLPDG-VLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGISE-PGGGL 143 (399)
T ss_pred ccCchhheecCCc-eEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeeeEEEe-ecCCc
Confidence 7788889999999 66666633355555442221110 0 00011111 12556778888888 46778
Q ss_pred EEEeCceEEEEcCCC--cEE---EEe-ccCcccccceeEEEEeCCCCcEEEEeCCC-------------cEEEEEeccCC
Q psy4832 194 YVGDFNLVRRLTPEG--NVF---TVL-QLSATQVSYQYYLALSPADGHLYISDAEK-------------HQILRVLSLES 254 (770)
Q Consensus 194 yv~d~~~I~~i~~~G--~v~---~~~-~~~~~~~~~p~~lav~p~~g~lyvsd~~~-------------~~I~~i~~~~~ 254 (770)
|++....+.+++ .| ++. .++ .++.....+-..|+++| +|.|||+--.+ ++|+++.
T Consensus 144 ~~~n~~~~~~~~-~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~p-DG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~---- 217 (399)
T COG2133 144 YVANRVAIGRLP-GGDTKLSEPKVIFRGIPKGGHHFGGRLVFGP-DGKLYVTTGSNGDPALAQDNVSLAGKVLRID---- 217 (399)
T ss_pred eEEEEEEEEEcC-CCccccccccEEeecCCCCCCcCcccEEECC-CCcEEEEeCCCCCcccccCccccccceeeec----
Confidence 888776777776 33 222 222 22223334456899998 78999986654 2333331
Q ss_pred ccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccC-CcEEEEeCCC--eEEEC-----CCCcE----
Q psy4832 255 VADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKAD-KTMFIADGTN--IRVVS-----PEGII---- 322 (770)
Q Consensus 255 ~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~-G~lYvaD~~~--Ir~id-----~~G~i---- 322 (770)
..+.+ +.+ ..+.+..-...-+.+|.|+++++. |.||+++.+. ++--| ..|..
T Consensus 218 ---~a~~~-----------~~d--~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP 281 (399)
T COG2133 218 ---RAGII-----------PAD--NPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWP 281 (399)
T ss_pred ---cCccc-----------ccC--CCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCc
Confidence 11111 000 001112223334678999999995 9999999776 32111 11211
Q ss_pred -EEeecCCCCCCCcCCCccCCC-c--ccccccc-----cCcceEEEeCCC------CeEEEEe--CCEEEEEcCCCcEEE
Q psy4832 323 -HTLIGHHKHHNIWSPFNCHRS-F--PASTAQL-----QWPTGLALSPLD------DSLHFID--DRVIFKLTNDLKVKI 385 (770)
Q Consensus 323 -~t~~g~~~~~~~~~p~~~~~~-~--~~~~~~l-----~~P~gla~d~~~------g~lyv~D--~~~I~~i~~~G~v~~ 385 (770)
.+ +|... .+..-.+. . ...+..+ ..|.||+|-.-+ +.|||+. +-.+.+..++|..+.
T Consensus 282 ~~~-~G~~~-----~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~ 355 (399)
T COG2133 282 YAY-FGQNY-----DGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKV 355 (399)
T ss_pred eec-cCccc-----CccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcce
Confidence 11 11110 11100000 0 0001111 246899998412 6899987 345777888887554
Q ss_pred EecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCC-CCceee
Q psy4832 386 VAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADID-ARKVNA 453 (770)
Q Consensus 386 vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~-~~ri~~ 453 (770)
+...-... ..-..|.+|++.+||.|||+|-. +.+|.|
T Consensus 356 ~~~~fl~~-------------------------------d~~gR~~dV~v~~DGallv~~D~~~g~i~R 393 (399)
T COG2133 356 VLTGFLSG-------------------------------DLGGRPRDVAVAPDGALLVLTDQGDGRILR 393 (399)
T ss_pred EEEEEEec-------------------------------CCCCcccceEECCCCeEEEeecCCCCeEEE
Confidence 43210000 00146999999999999999987 445433
|
|
| >PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins | Back alignment and domain information |
|---|
Probab=98.12 E-value=5e-06 Score=58.71 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=31.4
Q ss_pred cCceEEEEEecCCceEEEEEeCCCCEEEEEcCCCC
Q psy4832 635 TNDLKIRALKKGRFDVTYDYDHLDRLSVRKDNYGN 669 (770)
Q Consensus 635 ~~g~l~~~~~~~g~~~~y~YD~~grlv~~~d~~G~ 669 (770)
..|+|++++++.|.+++|+||+.|||++.+|+.|.
T Consensus 3 ~~G~l~~~~d~~G~~~~y~YD~~g~l~~~t~~~G~ 37 (38)
T PF05593_consen 3 ANGRLTSVTDPDGRTTRYTYDAAGRLTSVTDPDGR 37 (38)
T ss_pred CCCCEEEEEcCCCCEEEEEECCCCCEEEEECCCCc
Confidence 47899999999999999999999999999999885
|
The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ]. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0083 Score=64.72 Aligned_cols=109 Identities=11% Similarity=0.046 Sum_probs=68.8
Q ss_pred CCEEEEeC------ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeC---------CCcEEEEEeccCC
Q psy4832 191 GSLYVGDF------NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDA---------EKHQILRVLSLES 254 (770)
Q Consensus 191 G~lyv~d~------~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~---------~~~~I~~i~~~~~ 254 (770)
..+||.|. ++|..||.+ +++...+.. -..|.++ ++|....||++.+ ....|..++..
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~----G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~-- 85 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDG----GFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ-- 85 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEEc----cCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc--
Confidence 35777765 478888864 555554432 1368886 9998889999999 78888888532
Q ss_pred ccCCCCcEE--EEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCC--C-eEEECC-CCcEEEee
Q psy4832 255 VADPSINWE--VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGT--N-IRVVSP-EGIIHTLI 326 (770)
Q Consensus 255 ~~~~~g~~~--~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~--~-Ir~id~-~G~i~t~~ 326 (770)
++... +..+... .......|..++++++|. |||++.. + +-++|. .+++..-+
T Consensus 86 ----t~~~~~~i~~p~~p----------------~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei 144 (352)
T TIGR02658 86 ----THLPIADIELPEGP----------------RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM 144 (352)
T ss_pred ----cCcEEeEEccCCCc----------------hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 22221 1111100 011244688999999996 9998743 3 888884 45555434
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.3e-06 Score=54.15 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=25.8
Q ss_pred cCCeeEEEEcCCCcEEEEcCCCceEEee
Q psy4832 500 FTSISALSVSPDGVVNVADQGSLHILAL 527 (770)
Q Consensus 500 l~~P~giav~~dG~lyvaD~~~~~I~~i 527 (770)
|+.|.|||++++|.|||+|.+|+||+++
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 5679999999999999999999999864
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0012 Score=67.76 Aligned_cols=234 Identities=15% Similarity=0.163 Sum_probs=122.5
Q ss_pred cccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCcc--CCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcc
Q psy4832 218 ATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVA--DPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPK 295 (770)
Q Consensus 218 ~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~--~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~ 295 (770)
...+..|+||++.| .+.+||+|.+.+....++...... .+.--+..+.+.+ +. ..-..|.
T Consensus 19 Dp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~--------~~---------~~~~~PT 80 (336)
T TIGR03118 19 DPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPP--------PL---------AAEGTPT 80 (336)
T ss_pred CccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCC--------CC---------CCCCCcc
Confidence 45788999999998 889999999988887774321100 0000011111100 00 1122589
Q ss_pred eEEEccCCcEEEEeCCC---e--EEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCC--CCeEEE
Q psy4832 296 GLAIKADKTMFIADGTN---I--RVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPL--DDSLHF 368 (770)
Q Consensus 296 gIavd~~G~lYvaD~~~---I--r~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~--~g~lyv 368 (770)
||++......-|+.... . .....+|.|+-..+.-..... . +..-..+.. ..-.-=.|||+-.. .+.||.
T Consensus 81 GiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~-~--~~~~~~d~s-~~gavYkGLAi~~~~~~~~LYa 156 (336)
T TIGR03118 81 GQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRM-T--RAEIVVDAS-QQGNVYKGLAVGPTGGGDYLYA 156 (336)
T ss_pred EEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccc-c--ccEEEEccC-CCcceeeeeEEeecCCCceEEE
Confidence 99997533322333221 1 123456766654432111000 0 000000000 00001146777642 457999
Q ss_pred Ee--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeC
Q psy4832 369 ID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADI 446 (770)
Q Consensus 369 ~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~ 446 (770)
+| +++|..++.+-+...+.|...... .++ =..|.+|.. -.++|||+=.
T Consensus 157 adF~~g~IDVFd~~f~~~~~~g~F~DP~-------------------------iPa----gyAPFnIqn-ig~~lyVtYA 206 (336)
T TIGR03118 157 ANFRQGRIDVFKGSFRPPPLPGSFIDPA-------------------------LPA----GYAPFNVQN-LGGTLYVTYA 206 (336)
T ss_pred eccCCCceEEecCccccccCCCCccCCC-------------------------CCC----CCCCcceEE-ECCeEEEEEE
Confidence 99 788988875543222223211110 011 134777754 3578999743
Q ss_pred CCCc----------eeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcC------
Q psy4832 447 DARK----------VNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSP------ 510 (770)
Q Consensus 447 ~~~r----------i~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~------ 510 (770)
.... .-.|..+|++|.+..- +++...|+.|.|||+.|
T Consensus 207 ~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r---------------------------~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 207 QQDADRNDEVAGAGLGYVNVFTLNGQLLRR---------------------------VASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred ecCCcccccccCCCcceEEEEcCCCcEEEE---------------------------eccCCcccCCceeeeChhhhCCC
Confidence 2110 0125556666654331 12345699999999976
Q ss_pred CCcEEEEcCCCceEEeeecC
Q psy4832 511 DGVVNVADQGSLHILALQHY 530 (770)
Q Consensus 511 dG~lyvaD~~~~~I~~i~~~ 530 (770)
.|.|+|..-+.++|-.+++.
T Consensus 260 sg~lLVGNFGDG~InaFD~~ 279 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQ 279 (336)
T ss_pred CCCeEEeecCCceeEEecCC
Confidence 56899999999999888764
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0024 Score=70.03 Aligned_cols=184 Identities=17% Similarity=0.236 Sum_probs=97.0
Q ss_pred EEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCC
Q psy4832 193 LYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSG 269 (770)
Q Consensus 193 lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g 269 (770)
+||++. +.|..||.+ .++...+..+ ..-+.+++++|.+..+|++.. .+.|.+|+.. ++.+..-.-.|
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~---~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~------~~~~v~~i~~G 77 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTG---GAPHAGLKFSPDGRYLYVANR-DGTVSVIDLA------TGKVVATIKVG 77 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-S---TTEEEEEE-TT-SSEEEEEET-TSEEEEEETT------SSSEEEEEE-S
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCC---CCceeEEEecCCCCEEEEEcC-CCeEEEEECC------cccEEEEEecC
Confidence 446665 688888854 5666655422 122566888875557999986 4789999642 23322111111
Q ss_pred ccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCC--CeEEECCC-CcEEEeecCCCCCCCcCCCccCCCcc
Q psy4832 270 ERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGT--NIRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFP 345 (770)
Q Consensus 270 ~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~--~Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~ 345 (770)
..|.+|+++++|. +|++... .+..+|.. .++...+..+....
T Consensus 78 ----------------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~------------ 123 (369)
T PF02239_consen 78 ----------------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV------------ 123 (369)
T ss_dssp ----------------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T------------
T ss_pred ----------------------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccc------------
Confidence 1488999999997 7777643 38888854 44333332221100
Q ss_pred cccccccCcceEEEeCCCCeEEEEe---CCEEEEEcCC-Cc-EE-EEecCCCCCCCCCCCCccccccccccccccccCCc
Q psy4832 346 ASTAQLQWPTGLALSPLDDSLHFID---DRVIFKLTND-LK-VK-IVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDS 419 (770)
Q Consensus 346 ~~~~~l~~P~gla~d~~~g~lyv~D---~~~I~~i~~~-G~-v~-~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (770)
...-..+.+|..++ ....||.. .++|+.++.. .. +. .....
T Consensus 124 --~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~------------------------------ 170 (369)
T PF02239_consen 124 --DGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV------------------------------ 170 (369)
T ss_dssp --TTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-------------------------------
T ss_pred --cccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeecc------------------------------
Confidence 00111345677777 55555543 5889888833 21 11 11110
Q ss_pred ccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcE
Q psy4832 420 VRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRM 463 (770)
Q Consensus 420 ~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i 463 (770)
=..|++..++|+|+ ++++-..++ .|-.+|. .+++
T Consensus 171 -------g~~~~D~~~dpdgry~~va~~~sn---~i~viD~~~~k~ 206 (369)
T PF02239_consen 171 -------GRFPHDGGFDPDGRYFLVAANGSN---KIAVIDTKTGKL 206 (369)
T ss_dssp --------TTEEEEEE-TTSSEEEEEEGGGT---EEEEEETTTTEE
T ss_pred -------cccccccccCcccceeeecccccc---eeEEEeeccceE
Confidence 13589999999998 455555544 4666664 4444
|
... |
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.028 Score=61.30 Aligned_cols=67 Identities=21% Similarity=0.152 Sum_probs=40.4
Q ss_pred ceeeeeecCCCeEEECCCccEEecccCCCeEEEEec-cCccCCccCCCCCcccccccccCceEEEEcCCCCEEEEeC
Q psy4832 123 DVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMG-TGLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDF 198 (770)
Q Consensus 123 ~~~~~~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g-~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~ 198 (770)
..|++ +-+.+-|.+||+ .|++-...++|..+.| +|..- |.-.+..+ ---.-.+|+..||+.=+.+-.
T Consensus 187 r~Hsk--FV~~VRysPDG~-~Fat~gsDgki~iyDGktge~v---g~l~~~~a---HkGsIfalsWsPDs~~~~T~S 254 (603)
T KOG0318|consen 187 REHSK--FVNCVRYSPDGS-RFATAGSDGKIYIYDGKTGEKV---GELEDSDA---HKGSIFALSWSPDSTQFLTVS 254 (603)
T ss_pred ccccc--ceeeEEECCCCC-eEEEecCCccEEEEcCCCccEE---EEecCCCC---ccccEEEEEECCCCceEEEec
Confidence 34555 678899999996 5665547888888877 34432 11111111 222346788888887665443
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.8e-05 Score=64.49 Aligned_cols=64 Identities=27% Similarity=0.423 Sum_probs=51.5
Q ss_pred EEEEcCC-CCEEEEeC-------------------ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCC
Q psy4832 184 ALTSGPD-GSLYVGDF-------------------NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEK 243 (770)
Q Consensus 184 ~la~~~d-G~lyv~d~-------------------~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~ 243 (770)
+|+++++ |.||++|. +|+.+++|..+.++++ ..++..|+||++++.+..|+|+++..
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl---~~~L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVL---LDGLYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEE---EEEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEe---hhCCCccCeEEEcCCCCEEEEEeccC
Confidence 6889998 99999995 3799999987777666 45799999999998777799999999
Q ss_pred cEEEEEe
Q psy4832 244 HQILRVL 250 (770)
Q Consensus 244 ~~I~~i~ 250 (770)
+||.|+-
T Consensus 79 ~Ri~ryw 85 (89)
T PF03088_consen 79 YRILRYW 85 (89)
T ss_dssp TEEEEEE
T ss_pred ceEEEEE
Confidence 9999984
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >COG3209 RhsA Rhs family protein [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.6e-05 Score=90.39 Aligned_cols=128 Identities=22% Similarity=0.314 Sum_probs=94.8
Q ss_pred cCceEEEEEecCCceEEEEEeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEEEeCCCCeEEEEEEccCCcEeEEEe---
Q psy4832 635 TNDLKIRALKKGRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLISLVYDERGFLIFAQM--- 711 (770)
Q Consensus 635 ~~g~l~~~~~~~g~~~~y~YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~~~p~~g~~~~~~yd~~G~l~~~~~--- 711 (770)
....++....+.++...|.||..++|+.+....+....|.|.......+ .+....+.|+..|+......
T Consensus 466 ~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~ 537 (796)
T COG3209 466 TDLIRVEYDASGGRSTSYRYDGAGRLVTKSGAEGTDVTGQYGLVADLDG--------LGETTAWTYDQDGLAVEATIQPE 537 (796)
T ss_pred cccceeEEecCCCcceEEeeccccceeeeccCCcCceeccccchhcccc--------chhhheeehhccCchHHhhccCC
Confidence 3455666788899999999999999999999988777776655544422 24678888888876554443
Q ss_pred -------cCcEEEEEeCCCCCeEEEEcCCCCEEEEEEe-CCCCceE---EecCCceeeeeccCc-cccCCC
Q psy4832 712 -------FRHKYYIATDQCGTPVMVFNQYGETVREIMR-SPYGHIV---YDSNPYIYLPIDFCG-GLLDQE 770 (770)
Q Consensus 712 -------~~~~~~~~~d~~G~~~~~~d~~G~~v~~~~y-d~~G~~~---~~~~~~~~~p~~~~G-~~~d~~ 770 (770)
..+.++..+|+.|+|.+++|++|+++|+.+| +.||.+. ......+..+.++.| |++|.|
T Consensus 538 ~~~~~~~~~~~~~~~~d~~G~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~q~~d~e 608 (796)
T COG3209 538 GQDTPARLTQLYYTYDDHLGTPLVLTDGDGTTVWRYRYYDAGGALLLVNENNGALLRQYYRLGGPQQLDAE 608 (796)
T ss_pred CcceeeccceeEEEecCCCCCcceEEcCCCceEEEeccccccCccccccCCCceeeeEeeccCccceeeec
Confidence 1244445578899999999999999999765 5555533 334455888999999 999876
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.5e-05 Score=51.00 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=22.8
Q ss_pred cCCeeEEEEcCCCCEEEEeCCCCce
Q psy4832 427 LGSLTALAFSPTGDLYIADIDARKV 451 (770)
Q Consensus 427 l~~P~giavd~~G~lyVaD~~~~ri 451 (770)
|..|.|||++++|+|||||++++||
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV 25 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRV 25 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEE
Confidence 4679999999999999999999975
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0064 Score=62.56 Aligned_cols=222 Identities=15% Similarity=0.100 Sum_probs=120.1
Q ss_pred ccccccCceEEEEcCCCCEEEEeCc--eEEEEcCC-----CcE----EEEec-cCcccccceeEEEEeCCCCcEEEEeCC
Q psy4832 175 RDARLLTPVALTSGPDGSLYVGDFN--LVRRLTPE-----GNV----FTVLQ-LSATQVSYQYYLALSPADGHLYISDAE 242 (770)
Q Consensus 175 ~~~~l~~P~~la~~~dG~lyv~d~~--~I~~i~~~-----G~v----~~~~~-~~~~~~~~p~~lav~p~~g~lyvsd~~ 242 (770)
.+..|.+||+|++.|.|-+||+|.+ ....++.+ |.- .++-. .+......|.|+.+.. ....-|+...
T Consensus 18 tDp~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g 96 (336)
T TIGR03118 18 VDPGLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEG 96 (336)
T ss_pred cCccccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCC
Confidence 4678999999999999999999973 55666554 322 12211 1122456799999984 3333233211
Q ss_pred CcEE--EEEeccCCccCCCCcEEEEECCCccc--cCCCCCCcCCCcccccccccCcceEEEccC---CcEEEEeCCC--e
Q psy4832 243 KHQI--LRVLSLESVADPSINWEVAVGSGERC--IPGDETNCGDNGPALAAKLSHPKGLAIKAD---KTMFIADGTN--I 313 (770)
Q Consensus 243 ~~~I--~~i~~~~~~~~~~g~~~~vaG~g~~~--~p~~~~~~g~~g~~~~a~l~~P~gIavd~~---G~lYvaD~~~--I 313 (770)
.... +.+. ..+|.+.-....-... .+.. ..-|.+ ..-.-=+|+|+... ..||.+|..+ |
T Consensus 97 ~~~~a~Fif~------tEdGTisaW~p~v~~t~~~~~~--~~~d~s----~~gavYkGLAi~~~~~~~~LYaadF~~g~I 164 (336)
T TIGR03118 97 ITGPSRFLFV------TEDGTLSGWAPALGTTRMTRAE--IVVDAS----QQGNVYKGLAVGPTGGGDYLYAANFRQGRI 164 (336)
T ss_pred cccceeEEEE------eCCceEEeecCcCCcccccccE--EEEccC----CCcceeeeeEEeecCCCceEEEeccCCCce
Confidence 1100 1111 2333333222110000 0000 000000 00011257777643 4599999876 8
Q ss_pred EEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe---------------CCEEEEEc
Q psy4832 314 RVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID---------------DRVIFKLT 378 (770)
Q Consensus 314 r~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D---------------~~~I~~i~ 378 (770)
.++|.+-.-.++.|. |. +...++ .+ .|.+|..- .++|||+= .+.|-+++
T Consensus 165 DVFd~~f~~~~~~g~------F~----DP~iPa---gy-APFnIqni--g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd 228 (336)
T TIGR03118 165 DVFKGSFRPPPLPGS------FI----DPALPA---GY-APFNVQNL--GGTLYVTYAQQDADRNDEVAGAGLGYVNVFT 228 (336)
T ss_pred EEecCccccccCCCC------cc----CCCCCC---CC-CCcceEEE--CCeEEEEEEecCCcccccccCCCcceEEEEc
Confidence 888765332222222 11 111121 22 47777655 89999982 14577777
Q ss_pred CCCcEE-EEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcC------CCCEEEEeCCCCce
Q psy4832 379 NDLKVK-IVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSP------TGDLYIADIDARKV 451 (770)
Q Consensus 379 ~~G~v~-~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~------~G~lyVaD~~~~ri 451 (770)
.+|++. .++ ....|+.|.|||+.| .|.|.|...+..+
T Consensus 229 ~~G~l~~r~a-----------------------------------s~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~- 272 (336)
T TIGR03118 229 LNGQLLRRVA-----------------------------------SSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGT- 272 (336)
T ss_pred CCCcEEEEec-----------------------------------cCCcccCCceeeeChhhhCCCCCCeEEeecCCce-
Confidence 777643 343 234588999999965 5789999999886
Q ss_pred eeEEEEcC-CCcE
Q psy4832 452 NALRVIDS-TGRM 463 (770)
Q Consensus 452 ~~i~~i~~-~G~i 463 (770)
|..+|+ +|+.
T Consensus 273 --InaFD~~sG~~ 283 (336)
T TIGR03118 273 --INAYDPQSGAQ 283 (336)
T ss_pred --eEEecCCCCce
Confidence 567776 4653
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=97.82 E-value=9.7e-05 Score=62.61 Aligned_cols=63 Identities=13% Similarity=0.235 Sum_probs=45.6
Q ss_pred ceEEEeCCCCeEEEEeC-------------------CEEEEEcCCC-cEEEEecCCCCCCCCCCCCcccccccccccccc
Q psy4832 355 TGLALSPLDDSLHFIDD-------------------RVIFKLTNDL-KVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKST 414 (770)
Q Consensus 355 ~gla~d~~~g~lyv~D~-------------------~~I~~i~~~G-~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (770)
.+|+|++.+|.|||+|. +++++++|.. ++++++.
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-------------------------- 54 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-------------------------- 54 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE--------------------------
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh--------------------------
Confidence 37899983399999992 6899999764 5556552
Q ss_pred ccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeE
Q psy4832 415 VQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNAL 454 (770)
Q Consensus 415 ~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i 454 (770)
.|..|+||++++++. |+|+|+..+||.|.
T Consensus 55 -----------~L~fpNGVals~d~~~vlv~Et~~~Ri~ry 84 (89)
T PF03088_consen 55 -----------GLYFPNGVALSPDESFVLVAETGRYRILRY 84 (89)
T ss_dssp -----------EESSEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred -----------CCCccCeEEEcCCCCEEEEEeccCceEEEE
Confidence 367899999999998 99999999876544
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0041 Score=63.49 Aligned_cols=215 Identities=14% Similarity=0.211 Sum_probs=123.2
Q ss_pred ceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccC
Q psy4832 223 YQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKAD 302 (770)
Q Consensus 223 ~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~ 302 (770)
.-.+|+++|.+..||..-.....|..+ +.+|.+...+-. .-|..|.+|+.-.+
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVEl-------t~~GdlirtiPL--------------------~g~~DpE~Ieyig~ 139 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVEL-------TKEGDLIRTIPL--------------------TGFSDPETIEYIGG 139 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEE-------ecCCceEEEecc--------------------cccCChhHeEEecC
Confidence 357899999888888877777789888 566765443310 11567999999866
Q ss_pred CcEEEEeCCC----eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe---CCEEE
Q psy4832 303 KTMFIADGTN----IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID---DRVIF 375 (770)
Q Consensus 303 G~lYvaD~~~----Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D---~~~I~ 375 (770)
|..-++|-.. +..+++++.+....-.. .. + +. ..-.... -.|+|.||.+..|||+- .-+|+
T Consensus 140 n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~-i~-----L--~~-~~k~N~G---fEGlA~d~~~~~l~~aKEr~P~~I~ 207 (316)
T COG3204 140 NQFVIVDERDRALYLFTVDADTTVISAKVQK-IP-----L--GT-TNKKNKG---FEGLAWDPVDHRLFVAKERNPIGIF 207 (316)
T ss_pred CEEEEEehhcceEEEEEEcCCccEEeccceE-Ee-----c--cc-cCCCCcC---ceeeecCCCCceEEEEEccCCcEEE
Confidence 5555666443 44466776544332100 00 0 00 0000112 35999999888899996 24666
Q ss_pred EEcCCC-cEEEEe-cCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcC-CCCEEEEeCCCCcee
Q psy4832 376 KLTNDL-KVKIVA-GIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSP-TGDLYIADIDARKVN 452 (770)
Q Consensus 376 ~i~~~G-~v~~va-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~-~G~lyVaD~~~~ri~ 452 (770)
+++..- .+..-+ ..+.. ...-.+..-+|+.+++ .|.|+|-...+++
T Consensus 208 ~~~~~~~~l~~~~~~~~~~-----------------------------~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~-- 256 (316)
T COG3204 208 EVTQSPSSLSVHASLDPTA-----------------------------DRDLFVLDVSGLEFNAITNSLLVLSDESRR-- 256 (316)
T ss_pred EEecCCcccccccccCccc-----------------------------ccceEeeccccceecCCCCcEEEEecCCce--
Confidence 665211 011000 00000 0011245568899996 6788888777764
Q ss_pred eEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeec
Q psy4832 453 ALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQH 529 (770)
Q Consensus 453 ~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~ 529 (770)
+..++.+|.+....--. . +.. ........|.|||.|.+|+|||+---| ...++.+
T Consensus 257 -l~Evd~~G~~~~~lsL~-~-----------------g~~--gL~~dipqaEGiamDd~g~lYIvSEPn-lfy~F~~ 311 (316)
T COG3204 257 -LLEVDLSGEVIELLSLT-K-----------------GNH--GLSSDIPQAEGIAMDDDGNLYIVSEPN-LFYRFTP 311 (316)
T ss_pred -EEEEecCCCeeeeEEec-c-----------------CCC--CCcccCCCcceeEECCCCCEEEEecCC-cceeccc
Confidence 67888888753321100 0 011 112235679999999999999986554 3344433
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.037 Score=62.88 Aligned_cols=270 Identities=19% Similarity=0.225 Sum_probs=158.4
Q ss_pred CCCeEEEEecc--CccCCccCCCCCccc------------ccccccCceEEEEcCCCCEEEEeC--ceEEEEcCC-CcEE
Q psy4832 149 FPRTVSVVMGT--GLQRPLVCKDCDGVA------------RDARLLTPVALTSGPDGSLYVGDF--NLVRRLTPE-GNVF 211 (770)
Q Consensus 149 ~~~~i~~v~g~--G~~~~~~~~~~~g~~------------~~~~l~~P~~la~~~dG~lyv~d~--~~I~~i~~~-G~v~ 211 (770)
....|.+++-+ |..-.+-|+.-+... ..+.+..-..+++.|||.+.++-. ++|+.++.. |--.
T Consensus 306 s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 306 SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF 385 (893)
T ss_pred ccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE
Confidence 44566666544 555555454422211 133467778999999999988644 689988854 4433
Q ss_pred EEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccc
Q psy4832 212 TVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKL 291 (770)
Q Consensus 212 ~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l 291 (770)
..+ ...-+...++.+. ..|+..++..-.++|+.++.. .--++.++.... ..
T Consensus 386 vTF---teHts~Vt~v~f~-~~g~~llssSLDGtVRAwDlk-----RYrNfRTft~P~------------------p~-- 436 (893)
T KOG0291|consen 386 VTF---TEHTSGVTAVQFT-ARGNVLLSSSLDGTVRAWDLK-----RYRNFRTFTSPE------------------PI-- 436 (893)
T ss_pred EEe---ccCCCceEEEEEE-ecCCEEEEeecCCeEEeeeec-----ccceeeeecCCC------------------ce--
Confidence 344 2234556788998 589999998888888877532 112333332210 01
Q ss_pred cCcceEEEccCCcEEEEeCCC---eEEEC-CCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEE
Q psy4832 292 SHPKGLAIKADKTMFIADGTN---IRVVS-PEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLH 367 (770)
Q Consensus 292 ~~P~gIavd~~G~lYvaD~~~---Ir~id-~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~ly 367 (770)
.-..+|+|+.|.|.+|-..+ |.+.+ ..|++.-++..+.. --.+|+++| .+++.
T Consensus 437 -QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg---------------------PVs~l~f~~-~~~~L 493 (893)
T KOG0291|consen 437 -QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG---------------------PVSGLSFSP-DGSLL 493 (893)
T ss_pred -eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCC---------------------cceeeEEcc-ccCeE
Confidence 12478999999998886554 77776 45776655433221 124789999 78777
Q ss_pred EEe--CCEEEEEc---CCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCC-E
Q psy4832 368 FID--DRVIFKLT---NDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-L 441 (770)
Q Consensus 368 v~D--~~~I~~i~---~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-l 441 (770)
++- ...|++.+ ..|++.++.-. ....+++|.|+|. |
T Consensus 494 aS~SWDkTVRiW~if~s~~~vEtl~i~--------------------------------------sdvl~vsfrPdG~el 535 (893)
T KOG0291|consen 494 ASGSWDKTVRIWDIFSSSGTVETLEIR--------------------------------------SDVLAVSFRPDGKEL 535 (893)
T ss_pred EeccccceEEEEEeeccCceeeeEeec--------------------------------------cceeEEEEcCCCCeE
Confidence 765 34454443 45666665411 2357788889886 7
Q ss_pred EEEeCCCCceeeEEEEcC--CCcEEEeecCccC--CCCCcCCCCCcccccCccCccccc-ceecCCeeEEEEcCCCcEEE
Q psy4832 442 YIADIDARKVNALRVIDS--TGRMFDFAGRWQS--DKKNCNTTNCAEFEKNSKETLLTS-TARFTSISALSVSPDGVVNV 516 (770)
Q Consensus 442 yVaD~~~~ri~~i~~i~~--~G~i~~~aG~~~~--~~~~~~~~~~~~~~~~~~d~~~~~-~~~l~~P~giav~~dG~lyv 516 (770)
-||-.++. |...|. ...+.+|-|.... +.. ..|-..+. .++-..-+.|+.++||...+
T Consensus 536 aVaTldgq----Itf~d~~~~~q~~~IdgrkD~~~gR~-------------~~D~~ta~~sa~~K~Ftti~ySaDG~~Il 598 (893)
T KOG0291|consen 536 AVATLDGQ----ITFFDIKEAVQVGSIDGRKDLSGGRK-------------ETDRITAENSAKGKTFTTICYSADGKCIL 598 (893)
T ss_pred EEEEecce----EEEEEhhhceeeccccchhhcccccc-------------ccceeehhhcccCCceEEEEEcCCCCEEE
Confidence 77766643 344443 3333344443211 110 12222222 23334457799999999988
Q ss_pred EcCCCceEE
Q psy4832 517 ADQGSLHIL 525 (770)
Q Consensus 517 aD~~~~~I~ 525 (770)
|-..++-|-
T Consensus 599 AgG~sn~iC 607 (893)
T KOG0291|consen 599 AGGESNSIC 607 (893)
T ss_pred ecCCcccEE
Confidence 876555443
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00032 Score=68.72 Aligned_cols=120 Identities=15% Similarity=0.248 Sum_probs=71.2
Q ss_pred ccCcceEEEeCCCCeEEEEe--CCEEEEEc---CCCcEE---EEecC-CCCCCCCCCCCccccccccccccccccCCccc
Q psy4832 351 LQWPTGLALSPLDDSLHFID--DRVIFKLT---NDLKVK---IVAGI-PLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVR 421 (770)
Q Consensus 351 l~~P~gla~d~~~g~lyv~D--~~~I~~i~---~~G~v~---~vaG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (770)
+.-|+||++|.....+|+.| +..|..++ +.|.+. .+.-. ..+.
T Consensus 157 v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~---------------------------- 208 (310)
T KOG4499|consen 157 VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQP---------------------------- 208 (310)
T ss_pred ccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCC----------------------------
Confidence 45688999997556799999 57784444 445432 11110 0000
Q ss_pred ccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCcccccCccCcc-ccccee
Q psy4832 422 ASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETL-LTSTAR 499 (770)
Q Consensus 422 a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 499 (770)
..-..|.|+++|.+|+||||-+...+ |.++|+ +|++..-.--+.... .|-||.+-+-|-. ....+.
T Consensus 209 ---~e~~~PDGm~ID~eG~L~Va~~ng~~---V~~~dp~tGK~L~eiklPt~qi------tsccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 209 ---FESLEPDGMTIDTEGNLYVATFNGGT---VQKVDPTTGKILLEIKLPTPQI------TSCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred ---cCCCCCCcceEccCCcEEEEEecCcE---EEEECCCCCcEEEEEEcCCCce------EEEEecCCCccEEEEEehhc
Confidence 01134899999999999999999885 678886 787654332222221 2456654332322 234455
Q ss_pred cCCeeEEEEcC
Q psy4832 500 FTSISALSVSP 510 (770)
Q Consensus 500 l~~P~giav~~ 510 (770)
+..|.+.--+|
T Consensus 277 ~~dp~~~~~~p 287 (310)
T KOG4499|consen 277 FDDPVRTNTDP 287 (310)
T ss_pred ccCchhcccCC
Confidence 66666666666
|
|
| >TIGR01643 YD_repeat_2x YD repeat (two copies) | Back alignment and domain information |
|---|
Probab=97.74 E-value=7.8e-05 Score=53.99 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=32.5
Q ss_pred EeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEEEeCCCCeEEEE
Q psy4832 654 YDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLISL 698 (770)
Q Consensus 654 YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~~~p~~g~~~~~ 698 (770)
||+.|||++.+++.|++++|.|+..+ +++.+++| +|..++|
T Consensus 1 yd~~g~l~~~~~p~G~~~~~~YD~~G---rl~~~tdp-~g~~~~~ 41 (42)
T TIGR01643 1 YDAAGRLTGSTDADGTTTRYTYDAAG---RLVEITDA-DGGSTRY 41 (42)
T ss_pred CCCCCCEEEEECCCCCEEEEEECCCC---CEEEEECC-CCCEEEe
Confidence 78899999999999988888886654 56777788 7776665
|
This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin. |
| >PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins | Back alignment and domain information |
|---|
Probab=97.73 E-value=6e-05 Score=53.17 Aligned_cols=37 Identities=30% Similarity=0.539 Sum_probs=27.6
Q ss_pred EeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEEEeCCCCe
Q psy4832 654 YDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGK 694 (770)
Q Consensus 654 YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~~~p~~g~ 694 (770)
||+.|||++++|+.|.+++|.|+..+ +++++++| .|.
T Consensus 1 YD~~G~l~~~~d~~G~~~~y~YD~~g---~l~~~t~~-~G~ 37 (38)
T PF05593_consen 1 YDANGRLTSVTDPDGRTTRYTYDAAG---RLTSVTDP-DGR 37 (38)
T ss_pred CCCCCCEEEEEcCCCCEEEEEECCCC---CEEEEECC-CCc
Confidence 89999999999988877777776655 45666666 543
|
The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ]. |
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.046 Score=56.88 Aligned_cols=191 Identities=18% Similarity=0.250 Sum_probs=98.5
Q ss_pred EEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCcc---CCCCcEEEEECCCcccc-CCCCC
Q psy4832 203 RLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVA---DPSINWEVAVGSGERCI-PGDET 278 (770)
Q Consensus 203 ~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~---~~~g~~~~vaG~g~~~~-p~~~~ 278 (770)
..+++|.+.... ..|..|.||+++ .+.||++.. .+|+++....++. .+.+.. ..|- |-..-
T Consensus 34 g~~~~g~l~~~~----r~F~r~MGl~~~--~~~l~~~t~--~qiw~f~~~~n~l~~~~~~~~~-------D~~yvPr~~~ 98 (335)
T TIGR03032 34 GLQPNGELDVFE----RTFPRPMGLAVS--PQSLTLGTR--YQLWRFANVDNLLPAGQTHPGY-------DRLYVPRASY 98 (335)
T ss_pred EeCCCCcEEEEe----eccCccceeeee--CCeEEEEEc--ceeEEcccccccccccccCCCC-------CeEEeeeeee
Confidence 336778755443 368889999998 589999976 6899984322210 001111 0000 00001
Q ss_pred CcCCCcccccccccCcceEEEccCCcEEEEeCC-C-eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcce
Q psy4832 279 NCGDNGPALAAKLSHPKGLAIKADKTMFIADGT-N-IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTG 356 (770)
Q Consensus 279 ~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~-~-Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~g 356 (770)
..|| -.-+.|++ .++.++|..+. + +-.+++...+... |+|..-..-.+...- .-+|
T Consensus 99 ~TGd---------idiHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~---------WkPpFIs~la~eDRC---HLNG 156 (335)
T TIGR03032 99 VTGD---------IDAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPL---------WKPPFISKLAPEDRC---HLNG 156 (335)
T ss_pred eccC---------cchhheee-cCCcEEEEECcceeEEEECCCCccccc---------cCCccccccCccCce---eecc
Confidence 1111 13567888 46666666543 2 6666665544332 444321111111112 3468
Q ss_pred EEEeCCCCe-EEEEe---C--CEEEEEc-CCC-cEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccC
Q psy4832 357 LALSPLDDS-LHFID---D--RVIFKLT-NDL-KVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLG 428 (770)
Q Consensus 357 la~d~~~g~-lyv~D---~--~~I~~i~-~~G-~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 428 (770)
||+. +|. -||+- + ..=+|=. .+| .+.-+... ......|.
T Consensus 157 lA~~--~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~-------------------------------evl~~GLs 203 (335)
T TIGR03032 157 MALD--DGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSG-------------------------------EVVASGLS 203 (335)
T ss_pred eeee--CCeEEEEEEeeccCCcccccccccCCeEEEEeCCC-------------------------------CEEEcCcc
Confidence 9998 565 67774 1 0111111 111 11111100 00112345
Q ss_pred CeeEEEEcCCCCEEEEeCCCCceeeEEEEcCC-CcEEEee
Q psy4832 429 SLTALAFSPTGDLYIADIDARKVNALRVIDST-GRMFDFA 467 (770)
Q Consensus 429 ~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~-G~i~~~a 467 (770)
.|++--. .+|.||++|++.++ +..+|++ |+...++
T Consensus 204 mPhSPRW-hdgrLwvldsgtGe---v~~vD~~~G~~e~Va 239 (335)
T TIGR03032 204 MPHSPRW-YQGKLWLLNSGRGE---LGYVDPQAGKFQPVA 239 (335)
T ss_pred CCcCCcE-eCCeEEEEECCCCE---EEEEcCCCCcEEEEE
Confidence 5665544 47999999999986 6778885 9887775
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0041 Score=70.96 Aligned_cols=98 Identities=26% Similarity=0.475 Sum_probs=64.0
Q ss_pred ccccCcceEEEeCCCCeEEEEe--C-------------------CEEEEEcCCCc--------EE--EEecCCCCCCCCC
Q psy4832 349 AQLQWPTGLALSPLDDSLHFID--D-------------------RVIFKLTNDLK--------VK--IVAGIPLHCRTGD 397 (770)
Q Consensus 349 ~~l~~P~gla~d~~~g~lyv~D--~-------------------~~I~~i~~~G~--------v~--~vaG~~~~~~~~~ 397 (770)
..|..|.+|+++|.++.|||+- + +.|+++.+++. .. .+.|.+.....
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~-- 424 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASG-- 424 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccc--
Confidence 4689999999999889999985 1 26888886543 22 22333221100
Q ss_pred CCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEee
Q psy4832 398 KDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFA 467 (770)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~a 467 (770)
..........|..|.+|+|+++|+|||++-.+..-+.+.-..++|.+..++
T Consensus 425 -------------------~~~~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~ 475 (524)
T PF05787_consen 425 -------------------NGSNKCDDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFA 475 (524)
T ss_pred -------------------cccCcccCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeee
Confidence 001112345689999999999999999987765433344556677766654
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.025 Score=57.96 Aligned_cols=202 Identities=17% Similarity=0.188 Sum_probs=114.9
Q ss_pred ceEEEEcCCCCEEEEeC----ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCcc
Q psy4832 182 PVALTSGPDGSLYVGDF----NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVA 256 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~----~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~ 256 (770)
-.|+.+..+|.||.+.. .+|++++++ |++.....++.. ..-.||++. ++.||.-.+.++..++++.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~--~FgEGit~~--~d~l~qLTWk~~~~f~yd~----- 117 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR--YFGEGITIL--GDKLYQLTWKEGTGFVYDP----- 117 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEE--TTEEEEEESSSSEEEEEET-----
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc--ccceeEEEE--CCEEEEEEecCCeEEEEcc-----
Confidence 37888878999999886 389999965 787765554332 345799997 7899999999999999954
Q ss_pred CCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECCCC-cEEEeecCCCCCCC
Q psy4832 257 DPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSPEG-IIHTLIGHHKHHNI 334 (770)
Q Consensus 257 ~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~~G-~i~t~~g~~~~~~~ 334 (770)
+. ++.+ ++-. +.| ...||+.| ...||++|+.+ |+.+||.- .+..-+....
T Consensus 118 --~t-l~~~-~~~~--------y~~-----------EGWGLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~---- 169 (264)
T PF05096_consen 118 --NT-LKKI-GTFP--------YPG-----------EGWGLTSD-GKRLIMSDGSSRLYFLDPETFKEVRTIQVTD---- 169 (264)
T ss_dssp --TT-TEEE-EEEE---------SS-----------S--EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE----
T ss_pred --cc-ceEE-EEEe--------cCC-----------cceEEEcC-CCEEEEECCccceEEECCcccceEEEEEEEE----
Confidence 21 1111 1000 111 34699976 45799999987 99999863 2222111110
Q ss_pred cCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcC-CCcEEEEecC-CCCCCCCCCCCcccccccccc
Q psy4832 335 WSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTN-DLKVKIVAGI-PLHCRTGDKDKRDFKDKQSKT 410 (770)
Q Consensus 335 ~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~-~G~v~~vaG~-~~~~~~~~~~~~~~~~~~~~~ 410 (770)
++ ..+.+-+.|-+- +|.||.-- +++|.+|+| +|.|....-. +......
T Consensus 170 -------~g-----~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~-------------- 221 (264)
T PF05096_consen 170 -------NG-----RPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVG-------------- 221 (264)
T ss_dssp -------TT-----EE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHT--------------
T ss_pred -------CC-----EECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhccc--------------
Confidence 00 113334456665 78888665 789999996 5887765521 0000000
Q ss_pred ccccccCCcccccccccCCeeEEEEcCC-CCEEEEeCCCCceeeEEE
Q psy4832 411 KKSTVQDDSVRASNMDLGSLTALAFSPT-GDLYIADIDARKVNALRV 456 (770)
Q Consensus 411 ~~~~~~~~~~~a~~~~l~~P~giavd~~-G~lyVaD~~~~ri~~i~~ 456 (770)
........-.-.+|||.|+. +.|||+--.=-++.+|+.
T Consensus 222 --------~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 222 --------RDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp --------STTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred --------ccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence 00000111244799999985 558888754444544543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0021 Score=63.10 Aligned_cols=118 Identities=19% Similarity=0.245 Sum_probs=78.2
Q ss_pred EEEcCCCCEEEEeC-----------ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEE--EEEec
Q psy4832 185 LTSGPDGSLYVGDF-----------NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQI--LRVLS 251 (770)
Q Consensus 185 la~~~dG~lyv~d~-----------~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I--~~i~~ 251 (770)
--+||+|..|.+-. ..+++..+.+++..++. .+.-+++|++|.....+|+.|+.+..| +.++-
T Consensus 114 gkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~----~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~ 189 (310)
T KOG4499|consen 114 GKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWN----CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDC 189 (310)
T ss_pred CccCCCCceeeeeeccccccccccccEEEEeccCCCceeeeh----hccCCccccccccCcEEEEEccCceEEeeeecCC
Confidence 35789999887532 26778888888887764 566789999997778999999999999 44432
Q ss_pred cCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCC-CcEEE
Q psy4832 252 LESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPE-GIIHT 324 (770)
Q Consensus 252 ~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~-G~i~t 324 (770)
.++ +.+. ...+...... .| ..--.|.|+++|.+|+||||-... |.++|+. |++..
T Consensus 190 ~tG--~~sn-r~~i~dlrk~-~~--------------~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~ 247 (310)
T KOG4499|consen 190 PTG--DLSN-RKVIFDLRKS-QP--------------FESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILL 247 (310)
T ss_pred Ccc--cccC-cceeEEeccC-CC--------------cCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEE
Confidence 211 1111 1112111000 00 011259999999999999998654 9999964 76654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.32 Score=53.42 Aligned_cols=66 Identities=21% Similarity=0.392 Sum_probs=41.1
Q ss_pred cceEEEccCCc-EEEEeCCC-eEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEE
Q psy4832 294 PKGLAIKADKT-MFIADGTN-IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFI 369 (770)
Q Consensus 294 P~gIavd~~G~-lYvaD~~~-Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~ 369 (770)
+.++++.+||. +|++.... |.++|.. +++..-+..+ ..|.++++++ +|+ ||++
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G----------------------~~~~~i~~s~-DG~~~~v~ 95 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG----------------------GNPRGIAVSP-DGKYVYVA 95 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S----------------------SEEEEEEE---TTTEEEEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC----------------------CCcceEEEcC-CCCEEEEE
Confidence 34677888886 99997655 8999853 5443333222 1488999999 765 7777
Q ss_pred e--CCEEEEEcC-CCc
Q psy4832 370 D--DRVIFKLTN-DLK 382 (770)
Q Consensus 370 D--~~~I~~i~~-~G~ 382 (770)
. .+.|..+|. +.+
T Consensus 96 n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 96 NYEPGTVSVIDAETLE 111 (369)
T ss_dssp EEETTEEEEEETTT--
T ss_pred ecCCCceeEecccccc
Confidence 6 689999984 444
|
... |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.31 Score=49.68 Aligned_cols=221 Identities=21% Similarity=0.227 Sum_probs=118.9
Q ss_pred eEEEEcCCCC-EEEEeC-ceEEEEcCCC-cEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCC
Q psy4832 183 VALTSGPDGS-LYVGDF-NLVRRLTPEG-NVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPS 259 (770)
Q Consensus 183 ~~la~~~dG~-lyv~d~-~~I~~i~~~G-~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~ 259 (770)
..+.+.++++ |+++.. +.|+.++.+. +....+. ........+++++ ++.++++...++.|..++.. +
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~---~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~------~ 124 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT---GHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVE------T 124 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe---ccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECC------C
Confidence 4778888874 444443 4677776553 3333331 1223567888987 57777777666777777421 1
Q ss_pred CcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeC-C-CeEEECCC-CcEEEeecCCCCCCCcC
Q psy4832 260 INWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADG-T-NIRVVSPE-GIIHTLIGHHKHHNIWS 336 (770)
Q Consensus 260 g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~-~-~Ir~id~~-G~i~t~~g~~~~~~~~~ 336 (770)
+....... ..-..+..+++++++.++++.. . .|+.++.. +........
T Consensus 125 ~~~~~~~~---------------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-------- 175 (289)
T cd00200 125 GKCLTTLR---------------------GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG-------- 175 (289)
T ss_pred cEEEEEec---------------------cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec--------
Confidence 22211110 0011356888888776555543 3 37777654 322221111
Q ss_pred CCccCCCcccccccccCcceEEEeCCCC-eEEEEe-CCEEEEEcCC-CcEEEEecCCCCCCCCCCCCccccccccccccc
Q psy4832 337 PFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID-DRVIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKS 413 (770)
Q Consensus 337 p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D-~~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (770)
.-.....+++++ ++ .|+++. ++.|..++.. ++.....-
T Consensus 176 -------------~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~------------------------- 216 (289)
T cd00200 176 -------------HTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLR------------------------- 216 (289)
T ss_pred -------------CccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchh-------------------------
Confidence 011456788888 66 566665 4666666643 22111110
Q ss_pred cccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCC-CcE-EEeecCccCCCCCcCCCCCcccccCccC
Q psy4832 414 TVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDST-GRM-FDFAGRWQSDKKNCNTTNCAEFEKNSKE 491 (770)
Q Consensus 414 ~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~-G~i-~~~aG~~~~~~~~~~~~~~~~~~~~~~d 491 (770)
..-..+..+++++++.++++....+. |+.++.. +.. ..+.+.
T Consensus 217 -----------~~~~~i~~~~~~~~~~~~~~~~~~~~---i~i~~~~~~~~~~~~~~~---------------------- 260 (289)
T cd00200 217 -----------GHENGVNSVAFSPDGYLLASGSEDGT---IRVWDLRTGECVQTLSGH---------------------- 260 (289)
T ss_pred -----------hcCCceEEEEEcCCCcEEEEEcCCCc---EEEEEcCCceeEEEcccc----------------------
Confidence 00124688999998888888764444 4444432 322 222100
Q ss_pred cccccceecCCeeEEEEcCCCcEEEEcCCCceEE
Q psy4832 492 TLLTSTARFTSISALSVSPDGVVNVADQGSLHIL 525 (770)
Q Consensus 492 ~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~ 525 (770)
-..+.+++++++|.++++-..++.|+
T Consensus 261 --------~~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 261 --------TNSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred --------CCcEEEEEECCCCCEEEEecCCCeEE
Confidence 12367899999887776655555543
|
|
| >KOG1215|consensus | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0086 Score=73.82 Aligned_cols=190 Identities=21% Similarity=0.242 Sum_probs=131.9
Q ss_pred cCceEEEEcC-CCCEEEEeC--ceEEEEcCCCcEEEE-eccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCc
Q psy4832 180 LTPVALTSGP-DGSLYVGDF--NLVRRLTPEGNVFTV-LQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESV 255 (770)
Q Consensus 180 ~~P~~la~~~-dG~lyv~d~--~~I~~i~~~G~v~~~-~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~ 255 (770)
..+..+.++. ++.+|.+|. ..|-+...++....- . ..+...|.++++|-..+++|++|.....|....
T Consensus 437 ~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~---~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~----- 508 (877)
T KOG1215|consen 437 KNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELC---GDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVAD----- 508 (877)
T ss_pred ccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEe---ccCccccCcEEEEeccCCceecccCCceeEEEE-----
Confidence 4556666665 567999987 478887777655433 3 456778999999999999999999998888773
Q ss_pred cCCCCcE-EEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC---eEEECCCCcEEEeecCCC
Q psy4832 256 ADPSINW-EVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN---IRVVSPEGIIHTLIGHHK 330 (770)
Q Consensus 256 ~~~~g~~-~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~---Ir~id~~G~i~t~~g~~~ 330 (770)
.+|.. .+++.. .+..|+.+++++ .|.+|++|... |.+-..+|.-.+....
T Consensus 509 --~~g~~~~vl~~~---------------------~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~-- 563 (877)
T KOG1215|consen 509 --LDGSSRKVLVSK---------------------DLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVT-- 563 (877)
T ss_pred --ccCCceeEEEec---------------------CCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEe--
Confidence 23332 223321 135799999999 78899999874 6666666633222211
Q ss_pred CCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC--C-EEEEEcCCCcEEEEecCCCCCCCCCCCCccccccc
Q psy4832 331 HHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD--R-VIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQ 407 (770)
Q Consensus 331 ~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~--~-~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~ 407 (770)
..+.||+||++|-.++.+|++|. . .|.+++.+|..+.+.
T Consensus 564 ------------------~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~~-------------------- 605 (877)
T KOG1215|consen 564 ------------------NGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRVV-------------------- 605 (877)
T ss_pred ------------------CCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEEe--------------------
Confidence 12679999999988889999993 4 688888888755422
Q ss_pred cccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEE
Q psy4832 408 SKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRV 456 (770)
Q Consensus 408 ~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~ 456 (770)
....+..|.++++- .+.+|+.|+..+.+.+..+
T Consensus 606 ---------------~~~~~~~p~~~~~~-~~~iyw~d~~~~~~~~~~~ 638 (877)
T KOG1215|consen 606 ---------------DSEDLPHPFGLSVF-EDYIYWTDWSNRAISRAEK 638 (877)
T ss_pred ---------------ccccCCCceEEEEe-cceeEEeeccccceEeeec
Confidence 11234568889884 5689999998875443333
|
|
| >KOG1215|consensus | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.02 Score=70.56 Aligned_cols=221 Identities=20% Similarity=0.236 Sum_probs=146.0
Q ss_pred CCCEEEEeCceEEEEcCCCc-EEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEE-EEEC
Q psy4832 190 DGSLYVGDFNLVRRLTPEGN-VFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWE-VAVG 267 (770)
Q Consensus 190 dG~lyv~d~~~I~~i~~~G~-v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~-~vaG 267 (770)
.-.++++..+.|+++..+.. +...+ .+......+.++..++.+|.+|....+|.+... ++... .+.+
T Consensus 408 ~~~l~~s~~~~ir~~~~~~~~~~~p~----~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~-------~~~~~~~~~~ 476 (877)
T KOG1215|consen 408 EAFLLFSNRHDIRRISLDCSDVSRPL----EGIKNAVALDFDVLNNRIYWADLSDEKICRASQ-------DGSSECELCG 476 (877)
T ss_pred CcEEEEecCccceecccCCCcceEEc----cCCccceEEEEEecCCEEEEEeccCCeEeeecc-------CCCccceEec
Confidence 33456666678888876654 33332 223566777888778899999999999988742 22211 1122
Q ss_pred CCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC--eEEECCCCcE-EEeecCCCCCCCcCCCccCCC
Q psy4832 268 SGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVSPEGII-HTLIGHHKHHNIWSPFNCHRS 343 (770)
Q Consensus 268 ~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id~~G~i-~t~~g~~~~~~~~~p~~~~~~ 343 (770)
. ....|.+|++|. .+++|++|... |.+.+.+|.. ..++..
T Consensus 477 ~---------------------g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~--------------- 520 (877)
T KOG1215|consen 477 D---------------------GLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSK--------------- 520 (877)
T ss_pred c---------------------CccccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEec---------------
Confidence 1 144689999997 67799999887 6666666643 233322
Q ss_pred cccccccccCcceEEEeCCCCeEEEEeCC---EEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcc
Q psy4832 344 FPASTAQLQWPTGLALSPLDDSLHFIDDR---VIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420 (770)
Q Consensus 344 ~~~~~~~l~~P~gla~d~~~g~lyv~D~~---~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (770)
.+..|..++++|..+.+|++|.+ +|.|-..+|.-.....
T Consensus 521 ------~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~-------------------------------- 562 (877)
T KOG1215|consen 521 ------DLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLV-------------------------------- 562 (877)
T ss_pred ------CCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEE--------------------------------
Confidence 24579999999999999999943 5666666664222221
Q ss_pred cccccccCCeeEEEEcC-CCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCccccccee
Q psy4832 421 RASNMDLGSLTALAFSP-TGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTAR 499 (770)
Q Consensus 421 ~a~~~~l~~P~giavd~-~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 499 (770)
...+..|+|+++|. +..+|++|..... .|.+++-+|....+. ....
T Consensus 563 ---~~~~~~p~glt~d~~~~~~yw~d~~~~~--~i~~~~~~g~~r~~~----------------------------~~~~ 609 (877)
T KOG1215|consen 563 ---TNGILWPNGLTIDYETDRLYWADAKLDY--TIESANMDGQNRRVV----------------------------DSED 609 (877)
T ss_pred ---eCCccCCCcceEEeecceeEEEcccCCc--ceeeeecCCCceEEe----------------------------cccc
Confidence 01145699999996 6779999998763 367777677654311 1123
Q ss_pred cCCeeEEEEcCCCcEEEEcCCCceEEeeec
Q psy4832 500 FTSISALSVSPDGVVNVADQGSLHILALQH 529 (770)
Q Consensus 500 l~~P~giav~~dG~lyvaD~~~~~I~~i~~ 529 (770)
+..|.++++-.+ .+|..|..+..+.+...
T Consensus 610 ~~~p~~~~~~~~-~iyw~d~~~~~~~~~~~ 638 (877)
T KOG1215|consen 610 LPHPFGLSVFED-YIYWTDWSNRAISRAEK 638 (877)
T ss_pred CCCceEEEEecc-eeEEeeccccceEeeec
Confidence 567999999755 89999988765554433
|
|
| >COG3209 RhsA Rhs family protein [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0067 Score=73.97 Aligned_cols=145 Identities=19% Similarity=0.303 Sum_probs=95.2
Q ss_pred ecCCCCCCceEEEECCCCCEEEEEEcCC-CcceEeccCCccccCCCCcceeecceeeeee-cCceEEEEEecCCceEEEE
Q psy4832 576 YSKNTSFGKLSTITDASGNKINFLRDYS-NVAQLQWPTGLALSPLDDSLHFIDDRVIFKL-TNDLKIRALKKGRFDVTYD 653 (770)
Q Consensus 576 Yd~~~~~G~L~~vtd~~G~~~~~~~d~~-~~~~~~~p~G~~~~~~d~~~~~~~~~~~~~~-~~g~l~~~~~~~g~~~~y~ 653 (770)
|+.. +.+..++|+.|+.+++.|+.. .+..+.+|.|. ...+.+ ..|.+++++++.+. ..|.
T Consensus 40 y~~~---~~~~~~~~~~g~~t~~~y~~~~~~~~i~d~~g~--------------~~~~~yd~~g~~~~~t~~~~~-~~~~ 101 (796)
T COG3209 40 YDYL---GQTIALTDTQGATTRYEYDLAGNLTQITDPDGS--------------RTTTTYDADGNTTSVTDAPGT-PTYT 101 (796)
T ss_pred eccc---CCeEEEEcCCCCeEEEEeccCCccceecCCCCc--------------eeeeeecCCCceeeeecCCCC-cceE
Confidence 6665 778888888888888888866 44457778887 344443 47778888888888 7788
Q ss_pred EeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEEEeCCCCeEEEEEEccCCcEeEEEecCcEEEEEeCCCCCeEEEEcCC
Q psy4832 654 YDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLISLVYDERGFLIFAQMFRHKYYIATDQCGTPVMVFNQY 733 (770)
Q Consensus 654 YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~~~p~~g~~~~~~yd~~G~l~~~~~~~~~~~~~~d~~G~~~~~~d~~ 733 (770)
||..++++...++.|..+.+.|+... ++...... ++.+..+.||..| +......+. ...++..+.++.+.+..
T Consensus 102 ~~~~~~~~~~~~~~g~~~~~~~~~~~---~l~~~~~~-~g~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~d~ 174 (796)
T COG3209 102 YDAGGRVISQTTGRGSVTTFTYDGLD---RLPEVRGL-GGRVQFYLYDAGG-FTYDASGGL--TYATNSRGKTTTLRDDA 174 (796)
T ss_pred EcCCCceeeccCCCcceEEEccCCcc---ceeEEecc-CCeEEEEeecccc-cceecccCc--cccccccccceeeeccc
Confidence 88888888888888877777776554 33344444 7788888888887 222222222 44456666666555544
Q ss_pred CCEEEEEEeCCCCce
Q psy4832 734 GETVREIMRSPYGHI 748 (770)
Q Consensus 734 G~~v~~~~yd~~G~~ 748 (770)
+. ++.|+..+..
T Consensus 175 ~~---r~~~~~~~~~ 186 (796)
T COG3209 175 TR---RVTYDKGGRL 186 (796)
T ss_pred hh---heehhhcCcc
Confidence 43 2444444443
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.64 Score=51.14 Aligned_cols=141 Identities=18% Similarity=0.171 Sum_probs=72.4
Q ss_pred CCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEE
Q psy4832 428 GSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALS 507 (770)
Q Consensus 428 ~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~gia 507 (770)
++..+|+.+..+.||..-+++. +++++..+.- +.... . ...=..|-++|
T Consensus 364 nqI~~~~~~~~~~~~t~g~Dd~----l~~~~~~~~~--~t~~~----------------------~---~~lg~QP~~la 412 (603)
T KOG0318|consen 364 NQIKGMAASESGELFTIGWDDT----LRVISLKDNG--YTKSE----------------------V---VKLGSQPKGLA 412 (603)
T ss_pred ceEEEEeecCCCcEEEEecCCe----EEEEecccCc--ccccc----------------------e---eecCCCceeEE
Confidence 4578999988899999998874 6666532210 00000 0 00013588999
Q ss_pred EcCCCcE-EEEcCCCceEEe-eecCC---c-------ccCCCCcEEEeCCCCCcEEEEecCCceEEEE--cCCCCCcEEE
Q psy4832 508 VSPDGVV-NVADQGSLHILA-LQHYL---P-------THDEHGEFKIPYPATNEIYVFNRYGQHITTR--DMTSGKPRYS 573 (770)
Q Consensus 508 v~~dG~l-yvaD~~~~~I~~-i~~~~---~-------~~~~~g~~~i~~~~~~e~yvfd~~G~~~~t~--d~~tg~~~y~ 573 (770)
+.++|.+ .++-.....+.+ ..... . .....+.+....-..+.+++|.-.|.-+... -....+....
T Consensus 413 v~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~ 492 (603)
T KOG0318|consen 413 VLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITD 492 (603)
T ss_pred EcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceE
Confidence 9988743 444333323322 10000 0 1112233333333444577776555332111 1111222333
Q ss_pred EEecCCCCCCceEEEECCCCCEEEEEEcC
Q psy4832 574 FLYSKNTSFGKLSTITDASGNKINFLRDY 602 (770)
Q Consensus 574 ~~Yd~~~~~G~L~~vtd~~G~~~~~~~d~ 602 (770)
..|..+ |......|+.+..+-|....
T Consensus 493 vaySpd---~~yla~~Da~rkvv~yd~~s 518 (603)
T KOG0318|consen 493 VAYSPD---GAYLAAGDASRKVVLYDVAS 518 (603)
T ss_pred EEECCC---CcEEEEeccCCcEEEEEccc
Confidence 457766 88888999888877765543
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.01 Score=67.85 Aligned_cols=87 Identities=22% Similarity=0.391 Sum_probs=55.7
Q ss_pred CcccccceeEEEEeCCCCcEEEEeCCCc-------------------EEEEEeccCCccCCC---CcEEEEECCCccccC
Q psy4832 217 SATQVSYQYYLALSPADGHLYISDAEKH-------------------QILRVLSLESVADPS---INWEVAVGSGERCIP 274 (770)
Q Consensus 217 ~~~~~~~p~~lav~p~~g~lyvsd~~~~-------------------~I~~i~~~~~~~~~~---g~~~~vaG~g~~~~p 274 (770)
+++.+..|.+|+++|.++.|||+.+++. +|+++..... +.. ..+++++-.|..-
T Consensus 345 GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~--d~~~~~f~~~~~~~~g~~~-- 420 (524)
T PF05787_consen 345 GATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGN--DHAATTFTWELFLVGGDPT-- 420 (524)
T ss_pred ccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCC--ccccceeEEEEEEEecCcc--
Confidence 3678999999999999999999987765 7888853221 111 1233333222110
Q ss_pred CCCCCcCCCcccccccccCcceEEEccCCcEEEEe
Q psy4832 275 GDETNCGDNGPALAAKLSHPKGLAIKADKTMFIAD 309 (770)
Q Consensus 275 ~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD 309 (770)
. .............|..|..|+|+++|+|||+.
T Consensus 421 -~-~~~~~~~~~~~~~f~sPDNL~~d~~G~LwI~e 453 (524)
T PF05787_consen 421 -D-ASGNGSNKCDDNGFASPDNLAFDPDGNLWIQE 453 (524)
T ss_pred -c-ccccccCcccCCCcCCCCceEECCCCCEEEEe
Confidence 0 00011223335669999999999999999985
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.91 Score=52.14 Aligned_cols=160 Identities=20% Similarity=0.221 Sum_probs=101.7
Q ss_pred ccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEc
Q psy4832 221 VSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300 (770)
Q Consensus 221 ~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd 300 (770)
+..-..++.+| +|.+.++-...++|..++. .+|...+.+. ++ -+.-.++.+.
T Consensus 350 ~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~------~SgfC~vTFt--eH-------------------ts~Vt~v~f~ 401 (893)
T KOG0291|consen 350 SDRITSLAYSP-DGQLIATGAEDGKVKVWNT------QSGFCFVTFT--EH-------------------TSGVTAVQFT 401 (893)
T ss_pred ccceeeEEECC-CCcEEEeccCCCcEEEEec------cCceEEEEec--cC-------------------CCceEEEEEE
Confidence 34456788887 8899988888888877752 2232222111 00 0123478888
Q ss_pred cCCcEEEEeCC--CeEEECCCC--cEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe---CCE
Q psy4832 301 ADKTMFIADGT--NIRVVSPEG--IIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID---DRV 373 (770)
Q Consensus 301 ~~G~lYvaD~~--~Ir~id~~G--~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D---~~~ 373 (770)
..|+..++.+- .+|..|... .+.|+.... ..+ -..||+|| .|.|.++- .-.
T Consensus 402 ~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~------------------p~Q---fscvavD~-sGelV~AG~~d~F~ 459 (893)
T KOG0291|consen 402 ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE------------------PIQ---FSCVAVDP-SGELVCAGAQDSFE 459 (893)
T ss_pred ecCCEEEEeecCCeEEeeeecccceeeeecCCC------------------cee---eeEEEEcC-CCCEEEeeccceEE
Confidence 88887776542 277776542 444443221 112 24799999 88888775 356
Q ss_pred EEEEc-CCCcEEE-EecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCce
Q psy4832 374 IFKLT-NDLKVKI-VAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKV 451 (770)
Q Consensus 374 I~~i~-~~G~v~~-vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri 451 (770)
|+..+ +.|++.- +.|.- +| ..+|+|+|.|.+.++-+..+.|
T Consensus 460 IfvWS~qTGqllDiLsGHE---------gP----------------------------Vs~l~f~~~~~~LaS~SWDkTV 502 (893)
T KOG0291|consen 460 IFVWSVQTGQLLDILSGHE---------GP----------------------------VSGLSFSPDGSLLASGSWDKTV 502 (893)
T ss_pred EEEEEeecCeeeehhcCCC---------Cc----------------------------ceeeEEccccCeEEeccccceE
Confidence 77777 6677553 33321 11 3789999999988887777777
Q ss_pred eeEEEEcCCCcEEEee
Q psy4832 452 NALRVIDSTGRMFDFA 467 (770)
Q Consensus 452 ~~i~~i~~~G~i~~~a 467 (770)
+....++..|++.++.
T Consensus 503 RiW~if~s~~~vEtl~ 518 (893)
T KOG0291|consen 503 RIWDIFSSSGTVETLE 518 (893)
T ss_pred EEEEeeccCceeeeEe
Confidence 6666778888887775
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.45 Score=54.61 Aligned_cols=108 Identities=17% Similarity=0.139 Sum_probs=57.6
Q ss_pred ceee-eeecCCCeEEECCCccEEecccCCCeEEEEeccCc----cCCccCCCCC-cc-----------cccccccCceEE
Q psy4832 123 DVHH-HYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGL----QRPLVCKDCD-GV-----------ARDARLLTPVAL 185 (770)
Q Consensus 123 ~~~~-~~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~----~~~~~~~~~~-g~-----------~~~~~l~~P~~l 185 (770)
|.|| ++...+|. -||..+|+.+..+.+|.+|.-+-- ...++-.... |. -..+++. +
T Consensus 126 D~HHp~~s~t~g~---ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~----~ 198 (635)
T PRK02888 126 DTHHPHMSFTDGT---YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFR----I 198 (635)
T ss_pred CcCCCcccccCCc---cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccc----c
Confidence 4455 68887876 588899999866777766642200 0001000000 00 0011222 2
Q ss_pred EEcCCCC-EEEEeC--ceEEEEcCCC-cEEEEeccCcccccceeEEEEeCCCCcEEEEeC
Q psy4832 186 TSGPDGS-LYVGDF--NLVRRLTPEG-NVFTVLQLSATQVSYQYYLALSPADGHLYISDA 241 (770)
Q Consensus 186 a~~~dG~-lyv~d~--~~I~~i~~~G-~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~ 241 (770)
-+.+||. ++..+. +.+..||.+- ++...+..+ ..|..++++|.++.+|++..
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd----gnpd~v~~spdGk~afvTsy 254 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD----GNLDNVDTDYDGKYAFSTCY 254 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeC----CCcccceECCCCCEEEEecc
Confidence 2356785 444332 5788887663 232222111 26889999997778888864
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.25 Score=51.63 Aligned_cols=173 Identities=18% Similarity=0.148 Sum_probs=98.1
Q ss_pred cccccCceEEEEcCCCCEEEEeCceEEEEcCCCcEEEEecc--C-----------cccccceeEEEEeCCCCcEEEEeCC
Q psy4832 176 DARLLTPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQL--S-----------ATQVSYQYYLALSPADGHLYISDAE 242 (770)
Q Consensus 176 ~~~l~~P~~la~~~dG~lyv~d~~~I~~i~~~G~v~~~~~~--~-----------~~~~~~p~~lav~p~~g~lyvsd~~ 242 (770)
...|..|.||++.+ ..||++....|.++-..-++...... . .++--.-..|++ .++.+|+.++.
T Consensus 45 ~r~F~r~MGl~~~~-~~l~~~t~~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiHdia~--~~~~l~fVNT~ 121 (335)
T TIGR03032 45 ERTFPRPMGLAVSP-QSLTLGTRYQLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAHDLAL--GAGRLLFVNTL 121 (335)
T ss_pred eeccCccceeeeeC-CeEEEEEcceeEEcccccccccccccCCCCCeEEeeeeeeeccCcchhheee--cCCcEEEEECc
Confidence 56788999999964 68999998888888221111110000 0 011122346777 37788888888
Q ss_pred CcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCC-----C-eEE
Q psy4832 243 KHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGT-----N-IRV 315 (770)
Q Consensus 243 ~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~-----~-Ir~ 315 (770)
-.++..++ +..+.... .-+|+....... .-.+-+|+|+. +|. -||+--. . -|.
T Consensus 122 fSCLatl~-------~~~SF~P~-----WkPpFIs~la~e-------DRCHLNGlA~~-~g~p~yVTa~~~sD~~~gWR~ 181 (335)
T TIGR03032 122 FSCLATVS-------PDYSFVPL-----WKPPFISKLAPE-------DRCHLNGMALD-DGEPRYVTALSQSDVADGWRE 181 (335)
T ss_pred ceeEEEEC-------CCCccccc-----cCCccccccCcc-------Cceeecceeee-CCeEEEEEEeeccCCcccccc
Confidence 78888773 33322111 101111000000 01256799997 565 7776321 2 333
Q ss_pred ECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCC-CcEEEEec
Q psy4832 316 VSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTND-LKVKIVAG 388 (770)
Q Consensus 316 id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~-G~v~~vaG 388 (770)
-..+|-+..-+.++. .....|..|.+--+. +|+|||+| .+.|.+++++ |+...++-
T Consensus 182 ~~~~gG~vidv~s~e---------------vl~~GLsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~ 240 (335)
T TIGR03032 182 GRRDGGCVIDIPSGE---------------VVASGLSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAF 240 (335)
T ss_pred cccCCeEEEEeCCCC---------------EEEcCccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEE
Confidence 333443322222211 112346778888888 89999999 5899999986 99888874
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.3 Score=47.73 Aligned_cols=71 Identities=24% Similarity=0.271 Sum_probs=43.3
Q ss_pred CcceEEEccCCcEEEEeC-C------C-eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC
Q psy4832 293 HPKGLAIKADKTMFIADG-T------N-IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD 364 (770)
Q Consensus 293 ~P~gIavd~~G~lYvaD~-~------~-Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g 364 (770)
.|.||++.++|.+||++- . . |++++.+|.+..-+..+.. +.|.......... =....+||++| +|
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~---~~~~~~~~~~~~~---N~G~E~la~~~-dG 158 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAA---FLPDANGTSGRRN---NRGFEGLAVSP-DG 158 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccc---cccccCccccccC---CCCeEEEEECC-CC
Confidence 789999988999999973 3 3 9999999977443321110 1110000000011 12367999999 87
Q ss_pred e-EEEEe
Q psy4832 365 S-LHFID 370 (770)
Q Consensus 365 ~-lyv~D 370 (770)
. ||++-
T Consensus 159 ~~l~~~~ 165 (326)
T PF13449_consen 159 RTLFAAM 165 (326)
T ss_pred CEEEEEE
Confidence 7 88874
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=96.07 E-value=2.3 Score=46.95 Aligned_cols=75 Identities=19% Similarity=0.112 Sum_probs=44.8
Q ss_pred ceEEEEcCCCCEEEEeC--ceEEEEcCCCcEEEE--ec-cCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCcc
Q psy4832 182 PVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTV--LQ-LSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVA 256 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~--~~I~~i~~~G~v~~~--~~-~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~ 256 (770)
-.++++||.|.=+++-. +.|+.+|-.|.-.+. +. +....-..-..+.+++ .|..+++-+++.++..+
T Consensus 170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~aqakl~------- 241 (641)
T KOG0772|consen 170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGSAQAKLL------- 241 (641)
T ss_pred EEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecCcceeEE-------
Confidence 46789999998777654 478877766542211 11 1122222336788887 55555555566677777
Q ss_pred CCCCcEEE
Q psy4832 257 DPSINWEV 264 (770)
Q Consensus 257 ~~~g~~~~ 264 (770)
|.+|....
T Consensus 242 DRdG~~~~ 249 (641)
T KOG0772|consen 242 DRDGFEIV 249 (641)
T ss_pred ccCCceee
Confidence 56676433
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.78 Score=49.87 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=24.0
Q ss_pred CcceEEEeCCCCeEEEEe-CCEEEEEcCC
Q psy4832 353 WPTGLALSPLDDSLHFID-DRVIFKLTND 380 (770)
Q Consensus 353 ~P~gla~d~~~g~lyv~D-~~~I~~i~~~ 380 (770)
.|.|+++|...+.||+++ +.-||++..+
T Consensus 209 Q~EGCVVDDe~g~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 209 QPEGCVVDDETGRLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp -EEEEEEETTTTEEEEEETTTEEEEEESS
T ss_pred cceEEEEecccCCEEEecCccEEEEEecC
Confidence 589999998889999999 7889999843
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >COG3211 PhoX Predicted phosphatase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.12 Score=57.76 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=22.8
Q ss_pred ccccCCeeEEEEcC-CCCEEEEeCCCCc
Q psy4832 424 NMDLGSLTALAFSP-TGDLYIADIDARK 450 (770)
Q Consensus 424 ~~~l~~P~giavd~-~G~lyVaD~~~~r 450 (770)
...+..|..|++.| .|.+|++.+++.+
T Consensus 413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~ 440 (616)
T COG3211 413 ATPMDRPEWIAVNPGTGEVYFTLTNNGK 440 (616)
T ss_pred CccccCccceeecCCcceEEEEeCCCCc
Confidence 45688999999998 5789999998874
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.58 Score=53.72 Aligned_cols=81 Identities=12% Similarity=0.060 Sum_probs=47.5
Q ss_pred CCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEE
Q psy4832 428 GSLTALAFSPTGD-LYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISAL 506 (770)
Q Consensus 428 ~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~gi 506 (770)
.+|+||+++|||. +|++...+.. +..+|..-....|+++.. + .+...+....=..|...
T Consensus 321 KsPHGV~vSPDGkylyVanklS~t---VSVIDv~k~k~~~~~~~~--~---------------~~~vvaevevGlGPLHT 380 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPT---VTVIDVRKLDDLFDGKIK--P---------------RDAVVAEPELGLGPLHT 380 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCc---EEEEEChhhhhhhhccCC--c---------------cceEEEeeccCCCcceE
Confidence 4699999999998 8888877664 566664332222332210 0 01111111112358899
Q ss_pred EEcCCCcEEEEcCCCceEEeee
Q psy4832 507 SVSPDGVVNVADQGSLHILALQ 528 (770)
Q Consensus 507 av~~dG~lyvaD~~~~~I~~i~ 528 (770)
+++++|..|++=.-...|-+.+
T Consensus 381 aFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 381 AFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred EECCCCCEEEeEeecceeEEEe
Confidence 9999999988754444555443
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.39 Score=53.55 Aligned_cols=65 Identities=29% Similarity=0.364 Sum_probs=42.8
Q ss_pred eEEEEcCCCCEEEEeCc-eEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 183 VALTSGPDGSLYVGDFN-LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 183 ~~la~~~dG~lyv~d~~-~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
..+..|.+|.+||+..+ +.|-..++..+......-...++...++..| .+|.||+.+. .+|+++.
T Consensus 250 ~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D-~dGsLWv~t~--~giv~~~ 315 (671)
T COG3292 250 LLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLD-TDGSLWVGTY--GGIVRYL 315 (671)
T ss_pred eeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeec-cCCCEeeecc--CceEEEe
Confidence 34567889999998876 5555556655443322112334455788888 5999999876 4677774
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=95.63 E-value=3.3 Score=42.95 Aligned_cols=235 Identities=16% Similarity=0.145 Sum_probs=129.2
Q ss_pred cCCCeEEECCCccEEecccCCCeEEEEec-cCcc-CCccCCCCCcccccccccCceEEEEcCCCCEEEEeC---ceEEEE
Q psy4832 130 FHEGILQKGDGSSLHLKHEFPRTVSVVMG-TGLQ-RPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDF---NLVRRL 204 (770)
Q Consensus 130 ~~~gil~~~dG~~~~~~~~~~~~i~~v~g-~G~~-~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~---~~I~~i 204 (770)
..+.+-+..+|..+..+. ....+....- +|.+ +.+.|..-+ ..-++|.. .+..+.-+.. +.||-+
T Consensus 16 ~i~sl~fs~~G~~litss-~dDsl~LYd~~~g~~~~ti~skkyG--~~~~~Fth-------~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSS-EDDSLRLYDSLSGKQVKTINSKKYG--VDLACFTH-------HSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ceeEEEecCCCCEEEEec-CCCeEEEEEcCCCceeeEeeccccc--ccEEEEec-------CCceEEEccCCCCCceEEE
Confidence 345566778887766654 5555555532 3443 222222111 01122222 2222222222 356666
Q ss_pred cC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCC
Q psy4832 205 TP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDN 283 (770)
Q Consensus 205 ~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~ 283 (770)
+. +.+.++.+. +--.....|.++|. ++.+++-.....|+.++.... ...|.+
T Consensus 86 sl~dNkylRYF~---GH~~~V~sL~~sP~-~d~FlS~S~D~tvrLWDlR~~--~cqg~l--------------------- 138 (311)
T KOG1446|consen 86 SLHDNKYLRYFP---GHKKRVNSLSVSPK-DDTFLSSSLDKTVRLWDLRVK--KCQGLL--------------------- 138 (311)
T ss_pred EeecCceEEEcC---CCCceEEEEEecCC-CCeEEecccCCeEEeeEecCC--CCceEE---------------------
Confidence 63 456666663 23344678999995 489999888888877742100 111111
Q ss_pred cccccccccCcceEEEccCCcEEEEeCCC--eEEECC----CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceE
Q psy4832 284 GPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSP----EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGL 357 (770)
Q Consensus 284 g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~----~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gl 357 (770)
.+..+--+|+||+|.++.+-.+. |..+|. .|-++++.=. ......=+.|
T Consensus 139 ------~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~-------------------~~~~~ew~~l 193 (311)
T KOG1446|consen 139 ------NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT-------------------DNDEAEWTDL 193 (311)
T ss_pred ------ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC-------------------CCCccceeee
Confidence 12234567999999877665443 655552 2333333211 0112234689
Q ss_pred EEeCCCCe-EEEEe-CCEEEEEc-CCCcEE-EEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEE
Q psy4832 358 ALSPLDDS-LHFID-DRVIFKLT-NDLKVK-IVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTAL 433 (770)
Q Consensus 358 a~d~~~g~-lyv~D-~~~I~~i~-~~G~v~-~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~gi 433 (770)
.++| +|. |.++. ++.++.++ .+|.+. .+.+.+.. ...|-+-
T Consensus 194 ~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~----------------------------------~~~~~~a 238 (311)
T KOG1446|consen 194 EFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNA----------------------------------GNLPLSA 238 (311)
T ss_pred EEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCC----------------------------------CCcceeE
Confidence 9999 775 66666 56788888 678743 44443322 2346777
Q ss_pred EEcCCCCEEEEeCCCCceeeEEEEcCCCcE
Q psy4832 434 AFSPTGDLYIADIDARKVNALRVIDSTGRM 463 (770)
Q Consensus 434 avd~~G~lyVaD~~~~ri~~i~~i~~~G~i 463 (770)
++.|+|..+++-.+.++|+. +.+ .+|..
T Consensus 239 ~ftPds~Fvl~gs~dg~i~v-w~~-~tg~~ 266 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHV-WNL-ETGKK 266 (311)
T ss_pred EECCCCcEEEEecCCCcEEE-EEc-CCCcE
Confidence 89999998888888777653 333 45543
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=95.63 E-value=1 Score=51.79 Aligned_cols=66 Identities=26% Similarity=0.346 Sum_probs=41.7
Q ss_pred eeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcE-EEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEE
Q psy4832 430 LTALAFSPTGDLYIADIDARKVNALRVIDSTGRM-FDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSV 508 (770)
Q Consensus 430 P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i-~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav 508 (770)
..+|+++|.|.-.++-...+.| .|+.+ ++|++ ..+.|. -+....|.+
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I-~iWDl-~~~~~v~~l~~H------------------------------t~ti~SlsF 627 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLI-KIWDL-ANGSLVKQLKGH------------------------------TGTIYSLSF 627 (707)
T ss_pred eEEEEEcCCCceEeecccCCcE-EEEEc-CCCcchhhhhcc------------------------------cCceeEEEE
Confidence 5889999998765555444433 23332 34442 222221 123567999
Q ss_pred cCCCcEEEEcCCCceEEee
Q psy4832 509 SPDGVVNVADQGSLHILAL 527 (770)
Q Consensus 509 ~~dG~lyvaD~~~~~I~~i 527 (770)
+.||.+++++.+++.|+.-
T Consensus 628 S~dg~vLasgg~DnsV~lW 646 (707)
T KOG0263|consen 628 SRDGNVLASGGADNSVRLW 646 (707)
T ss_pred ecCCCEEEecCCCCeEEEE
Confidence 9999999999988877654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=95.59 E-value=3.1 Score=42.19 Aligned_cols=146 Identities=20% Similarity=0.206 Sum_probs=75.2
Q ss_pred ceEEEEcCCCCEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC
Q psy4832 182 PVALTSGPDGSLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP 258 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~ 258 (770)
..++++.|++.++++-. +.|+.++.+ ++....+.. .......+.+.| ++..+++-..++.|..++...
T Consensus 12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~---~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~----- 82 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG---HTGPVRDVAASA-DGTYLASGSSDKTIRLWDLET----- 82 (289)
T ss_pred EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec---CCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCc-----
Confidence 46778888876555433 466666543 333222211 111224788887 454444444466776664211
Q ss_pred CCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeC-CC-eEEECCC-CcEEEeecCCCCCCCc
Q psy4832 259 SINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADG-TN-IRVVSPE-GIIHTLIGHHKHHNIW 335 (770)
Q Consensus 259 ~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~-~~-Ir~id~~-G~i~t~~g~~~~~~~~ 335 (770)
......+.+. -..+..+++.+++.++++.. .. |+.++.. +.....+..
T Consensus 83 ~~~~~~~~~~----------------------~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------- 133 (289)
T cd00200 83 GECVRTLTGH----------------------TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG------- 133 (289)
T ss_pred ccceEEEecc----------------------CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc-------
Confidence 0112122110 11356788888777776655 33 7777654 433222211
Q ss_pred CCCccCCCcccccccccCcceEEEeCCCCeEEEE-e-CCEEEEEcCC
Q psy4832 336 SPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFI-D-DRVIFKLTND 380 (770)
Q Consensus 336 ~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~-D-~~~I~~i~~~ 380 (770)
.-..+..++++| ++.++++ . ++.|..++..
T Consensus 134 --------------~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~ 165 (289)
T cd00200 134 --------------HTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLR 165 (289)
T ss_pred --------------CCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEcc
Confidence 112467888998 5665544 3 5667776643
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=95.39 E-value=1.2 Score=48.07 Aligned_cols=73 Identities=26% Similarity=0.299 Sum_probs=46.6
Q ss_pred CcceEEEeCCCCeEEEEe--C------CEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccc
Q psy4832 353 WPTGLALSPLDDSLHFID--D------RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASN 424 (770)
Q Consensus 353 ~P~gla~d~~~g~lyv~D--~------~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 424 (770)
-|.+|++.+ +|.+||++ . ++|++++.+|++....-.|........+. ...
T Consensus 86 D~Egi~~~~-~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~------------------~~~--- 143 (326)
T PF13449_consen 86 DPEGIAVPP-DGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGT------------------SGR--- 143 (326)
T ss_pred ChhHeEEec-CCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCcc------------------ccc---
Confidence 688999965 99999998 6 89999999998743332232211110000 000
Q ss_pred cccCCeeEEEEcCCCC-EEEEeCC
Q psy4832 425 MDLGSLTALAFSPTGD-LYIADID 447 (770)
Q Consensus 425 ~~l~~P~giavd~~G~-lyVaD~~ 447 (770)
..=....+||+.++|. ||++-..
T Consensus 144 ~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 144 RNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred cCCCCeEEEEECCCCCEEEEEECc
Confidence 0113479999999999 7777543
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.2 Score=43.65 Aligned_cols=183 Identities=16% Similarity=0.150 Sum_probs=101.5
Q ss_pred eEEEEcCCCCEEEEeC----ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 183 VALTSGPDGSLYVGDF----NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 183 ~~la~~~dG~lyv~d~----~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
+++..+ +|.||.+-. .+||+.+.+ |++...-.+.+ .-..-.|+... .+.+|...+..+.-++++.
T Consensus 49 QGL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~~~FgEGit~~--gd~~y~LTw~egvaf~~d~------ 118 (262)
T COG3823 49 QGLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-DTVFGEGITKL--GDYFYQLTWKEGVAFKYDA------ 118 (262)
T ss_pred cceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCC-ccccccceeec--cceEEEEEeccceeEEECh------
Confidence 456665 567777654 489999976 66654332211 11122456554 6788888888777777743
Q ss_pred CCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECCC-----CcEE-EeecCCC
Q psy4832 258 PSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSPE-----GIIH-TLIGHHK 330 (770)
Q Consensus 258 ~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~~-----G~i~-t~~g~~~ 330 (770)
+.- + -.|.. .+.|+ -.|++-| +.+|+.+|+.. ++..||. ++|. +.-|.+
T Consensus 119 -~t~-~---~lg~~------~y~Ge-----------GWgLt~d-~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~p- 174 (262)
T COG3823 119 -DTL-E---ELGRF------SYEGE-----------GWGLTSD-DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVP- 174 (262)
T ss_pred -HHh-h---hhccc------ccCCc-----------ceeeecC-CcceEeeCCceEEEecCHHHhhhcceEEEEECCee-
Confidence 110 0 01111 12232 2477776 44588898877 8877764 2222 222211
Q ss_pred CCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCC-CcEEEEecC-CCCCCCCCCCCcccccc
Q psy4832 331 HHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTND-LKVKIVAGI-PLHCRTGDKDKRDFKDK 406 (770)
Q Consensus 331 ~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~-G~v~~vaG~-~~~~~~~~~~~~~~~~~ 406 (770)
...-+.|-.- +|.||.-= +.+|.||+|+ |+|....-. +......
T Consensus 175 --------------------v~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~---------- 222 (262)
T COG3823 175 --------------------VSKLNELEWV--DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELN---------- 222 (262)
T ss_pred --------------------cccccceeee--ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcC----------
Confidence 1112233333 67777543 6899999975 887755422 1111000
Q ss_pred ccccccccccCCcccccccccCCeeEEEEcCCC-CEEEEeC
Q psy4832 407 QSKTKKSTVQDDSVRASNMDLGSLTALAFSPTG-DLYIADI 446 (770)
Q Consensus 407 ~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G-~lyVaD~ 446 (770)
......+-++|||.++++ ++|++-.
T Consensus 223 ---------------~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 223 ---------------LDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ---------------ccccccccccceeecCcCCeEEEecC
Confidence 011224678999999976 6888754
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=95.35 E-value=4.1 Score=42.18 Aligned_cols=194 Identities=12% Similarity=0.191 Sum_probs=107.8
Q ss_pred eeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCc--EEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc
Q psy4832 224 QYYLALSPADGHLYISDAEKHQILRVLSLESVADPSIN--WEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA 301 (770)
Q Consensus 224 p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~--~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~ 301 (770)
.+.|.|+| ...|.++....+.|.-++-... .-. ..++ ..-..-+.|.++|
T Consensus 175 vn~l~FHP-re~ILiS~srD~tvKlFDfsK~----saKrA~K~~-----------------------qd~~~vrsiSfHP 226 (430)
T KOG0640|consen 175 VNDLDFHP-RETILISGSRDNTVKLFDFSKT----SAKRAFKVF-----------------------QDTEPVRSISFHP 226 (430)
T ss_pred ccceeecc-hhheEEeccCCCeEEEEecccH----HHHHHHHHh-----------------------hccceeeeEeecC
Confidence 35789998 7788888888777766632100 000 0000 0011246899999
Q ss_pred CCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeCCEEEEEcC
Q psy4832 302 DKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFKLTN 379 (770)
Q Consensus 302 ~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~~~I~~i~~ 379 (770)
.|+...+-+.. +|..|-+- ..-++... ..+..-...+.+-.++ .++|||+. +.
T Consensus 227 sGefllvgTdHp~~rlYdv~T-~Qcfvsan----------------Pd~qht~ai~~V~Ys~-t~~lYvTa-------Sk 281 (430)
T KOG0640|consen 227 SGEFLLVGTDHPTLRLYDVNT-YQCFVSAN----------------PDDQHTGAITQVRYSS-TGSLYVTA-------SK 281 (430)
T ss_pred CCceEEEecCCCceeEEeccc-eeEeeecC----------------cccccccceeEEEecC-CccEEEEe-------cc
Confidence 99855554444 66655432 11222111 0111223456778888 99999997 45
Q ss_pred CCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC
Q psy4832 380 DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS 459 (770)
Q Consensus 380 ~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~ 459 (770)
||.|+..-|....|...... ..++ ....+..|..+|....+... ..+.+++.+.+
T Consensus 282 DG~IklwDGVS~rCv~t~~~-----------------AH~g-------sevcSa~Ftkn~kyiLsSG~-DS~vkLWEi~t 336 (430)
T KOG0640|consen 282 DGAIKLWDGVSNRCVRTIGN-----------------AHGG-------SEVCSAVFTKNGKYILSSGK-DSTVKLWEIST 336 (430)
T ss_pred CCcEEeeccccHHHHHHHHh-----------------hcCC-------ceeeeEEEccCCeEEeecCC-cceeeeeeecC
Confidence 66666666655555211000 0000 12355667777765555444 44557788877
Q ss_pred CCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCC
Q psy4832 460 TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDG 512 (770)
Q Consensus 460 ~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG 512 (770)
..-+..+.|.+..+.+ -..+++.|+.-..-.+.||.
T Consensus 337 ~R~l~~YtGAg~tgrq-----------------~~rtqAvFNhtEdyVl~pDE 372 (430)
T KOG0640|consen 337 GRMLKEYTGAGTTGRQ-----------------KHRTQAVFNHTEDYVLFPDE 372 (430)
T ss_pred CceEEEEecCCcccch-----------------hhhhhhhhcCccceEEcccc
Confidence 7778888888755543 23556667766666665543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=3.6 Score=46.32 Aligned_cols=64 Identities=22% Similarity=0.158 Sum_probs=34.5
Q ss_pred eEEEEcCCCC-E-EEEeC---ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeC--CCcEEEEEe
Q psy4832 183 VALTSGPDGS-L-YVGDF---NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDA--EKHQILRVL 250 (770)
Q Consensus 183 ~~la~~~dG~-l-yv~d~---~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~--~~~~I~~i~ 250 (770)
..+++.|||. | |++.. ..|+.++.. |+...+.... . .-..++++|.+..|+++.. ++-+|+.++
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~--g--~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 278 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR--G--HNGAPAFSPDGSRLAFASSKDGVLNIYVMG 278 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC--C--ccCceeECCCCCEEEEEEecCCcEEEEEEE
Confidence 4567888886 3 33332 268888765 4433332111 1 1235789984445766532 234577774
|
|
| >COG3211 PhoX Predicted phosphatase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.24 Score=55.34 Aligned_cols=89 Identities=21% Similarity=0.389 Sum_probs=55.9
Q ss_pred cccccceeEEEEeCCCCcEEEEeCCCc----------------EEEEEeccC-CccCCCCcEEEEECCCccccCCCCCCc
Q psy4832 218 ATQVSYQYYLALSPADGHLYISDAEKH----------------QILRVLSLE-SVADPSINWEVAVGSGERCIPGDETNC 280 (770)
Q Consensus 218 ~~~~~~p~~lav~p~~g~lyvsd~~~~----------------~I~~i~~~~-~~~~~~g~~~~vaG~g~~~~p~~~~~~ 280 (770)
++.+..|..|++.|..+.+|++.+++. +|+|+-... ...+....+++++-.|..- ....
T Consensus 413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~----~~~~ 488 (616)
T COG3211 413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPS----VLEG 488 (616)
T ss_pred CccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcc----cccc
Confidence 567889999999999999999988765 566664322 1122233555554322210 0011
Q ss_pred CCCcccccccccCcceEEEccCCcEEEEeC
Q psy4832 281 GDNGPALAAKLSHPKGLAIKADKTMFIADG 310 (770)
Q Consensus 281 g~~g~~~~a~l~~P~gIavd~~G~lYvaD~ 310 (770)
+.........|+.|.+|+||+.|+|||+.-
T Consensus 489 ~~~~~~~~~~f~~PDnl~fD~~GrLWi~TD 518 (616)
T COG3211 489 GASANINANWFNSPDNLAFDPWGRLWIQTD 518 (616)
T ss_pred ccccCcccccccCCCceEECCCCCEEEEec
Confidence 111112225688999999999999999743
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.04 E-value=4.5 Score=40.93 Aligned_cols=66 Identities=12% Similarity=0.156 Sum_probs=43.3
Q ss_pred EEccCCcEEEEeCCC-eEEECC-CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe-CCEE
Q psy4832 298 AIKADKTMFIADGTN-IRVVSP-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID-DRVI 374 (770)
Q Consensus 298 avd~~G~lYvaD~~~-Ir~id~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D-~~~I 374 (770)
++..++.+|+++... |+.+|. +|++.--.-... .+..+ ..++ ++.|||.. ++.|
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-------------------~~~~~--~~~~--~~~v~v~~~~~~l 88 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-------------------PISGA--PVVD--GGRVYVGTSDGSL 88 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-------------------CGGSG--EEEE--TTEEEEEETTSEE
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-------------------cccce--eeec--ccccccccceeee
Confidence 554578899996655 999996 787643222111 11112 2444 78899887 5799
Q ss_pred EEEc-CCCcEEEE
Q psy4832 375 FKLT-NDLKVKIV 386 (770)
Q Consensus 375 ~~i~-~~G~v~~v 386 (770)
+.++ .+|++..-
T Consensus 89 ~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 89 YALDAKTGKVLWS 101 (238)
T ss_dssp EEEETTTSCEEEE
T ss_pred EecccCCcceeee
Confidence 9999 88987654
|
... |
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=94.83 E-value=5.6 Score=40.99 Aligned_cols=136 Identities=24% Similarity=0.349 Sum_probs=81.3
Q ss_pred cceEEEcc-CCcEEEEeCCC----eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEE
Q psy4832 294 PKGLAIKA-DKTMFIADGTN----IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHF 368 (770)
Q Consensus 294 P~gIavd~-~G~lYvaD~~~----Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv 368 (770)
-.+|++.| +++.||+-+.. |+-+-...-+.++.|.... .+.+.|-| +|.-|+
T Consensus 189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD----------------------INsv~ffP-~G~afa 245 (343)
T KOG0286|consen 189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD----------------------INSVRFFP-SGDAFA 245 (343)
T ss_pred EEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc----------------------cceEEEcc-CCCeee
Confidence 34677777 88999985543 4444334456666655321 33566777 777666
Q ss_pred Ee--CCEEEEEc--CCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEE
Q psy4832 369 ID--DRVIFKLT--NDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIA 444 (770)
Q Consensus 369 ~D--~~~I~~i~--~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVa 444 (770)
+- +...+.+| .|.++.++...+. ....++++|+.+|+|.++
T Consensus 246 tGSDD~tcRlyDlRaD~~~a~ys~~~~-----------------------------------~~gitSv~FS~SGRlLfa 290 (343)
T KOG0286|consen 246 TGSDDATCRLYDLRADQELAVYSHDSI-----------------------------------ICGITSVAFSKSGRLLFA 290 (343)
T ss_pred ecCCCceeEEEeecCCcEEeeeccCcc-----------------------------------cCCceeEEEcccccEEEe
Confidence 54 44444444 6666666553221 122588999999999999
Q ss_pred eCCCCceeeEEEEcC-CCc-EEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCC
Q psy4832 445 DIDARKVNALRVIDS-TGR-MFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQG 520 (770)
Q Consensus 445 D~~~~ri~~i~~i~~-~G~-i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~ 520 (770)
-.....++ .-|. .|+ +..+.|-. ++.++|.++|||.-.-+-.-
T Consensus 291 gy~d~~c~---vWDtlk~e~vg~L~GHe------------------------------NRvScl~~s~DG~av~TgSW 335 (343)
T KOG0286|consen 291 GYDDFTCN---VWDTLKGERVGVLAGHE------------------------------NRVSCLGVSPDGMAVATGSW 335 (343)
T ss_pred eecCCcee---EeeccccceEEEeeccC------------------------------CeeEEEEECCCCcEEEecch
Confidence 77665433 3332 343 33344332 45788999999977665443
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=7.1 Score=44.20 Aligned_cols=63 Identities=17% Similarity=0.004 Sum_probs=35.3
Q ss_pred EEEEcCCCC-EE-EEeC---ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeC--CCcEEEEEe
Q psy4832 184 ALTSGPDGS-LY-VGDF---NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDA--EKHQILRVL 250 (770)
Q Consensus 184 ~la~~~dG~-ly-v~d~---~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~--~~~~I~~i~ 250 (770)
...+.|||. |+ +.+. ..|+.++.+ |+...+... . . .....+++|.+..|+++.. ++.+|+.++
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~-g--~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-P-G--INGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-C-C--CcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 456788886 43 3333 268888865 444333221 1 1 1235688985556776533 234688874
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=94.68 E-value=6.4 Score=40.94 Aligned_cols=232 Identities=14% Similarity=0.172 Sum_probs=118.5
Q ss_pred CceEEEEcCCCCEEEEeC--ceEEEEc-CCCcEEEEeccCcccccceeEEEEeCCCCcEEE-EeCCCcEEEEEeccCCcc
Q psy4832 181 TPVALTSGPDGSLYVGDF--NLVRRLT-PEGNVFTVLQLSATQVSYQYYLALSPADGHLYI-SDAEKHQILRVLSLESVA 256 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~--~~I~~i~-~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyv-sd~~~~~I~~i~~~~~~~ 256 (770)
.+..|.++++|...++.. +.|+.++ .+|+....+... -..+.-+.+......+.- +...+..|+-++.
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk---kyG~~~~~Fth~~~~~i~sStk~d~tIryLsl----- 87 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK---KYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL----- 87 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc---cccccEEEEecCCceEEEccCCCCCceEEEEe-----
Confidence 468899999999887643 4777777 467776655321 111222223221222222 2222344444422
Q ss_pred CCCCcE-EEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCCCcEEEeecCCCCCC
Q psy4832 257 DPSINW-EVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHN 333 (770)
Q Consensus 257 ~~~g~~-~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~ 333 (770)
-+..+ ..+.|-.. .-..|.+.|-++.|++-+.. ||..|.. +.
T Consensus 88 -~dNkylRYF~GH~~----------------------~V~sL~~sP~~d~FlS~S~D~tvrLWDlR--~~---------- 132 (311)
T KOG1446|consen 88 -HDNKYLRYFPGHKK----------------------RVNSLSVSPKDDTFLSSSLDKTVRLWDLR--VK---------- 132 (311)
T ss_pred -ecCceEEEcCCCCc----------------------eEEEEEecCCCCeEEecccCCeEEeeEec--CC----------
Confidence 11222 22222211 24578888878888886543 6655532 00
Q ss_pred CcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC--CEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccc
Q psy4832 334 IWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD--RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTK 411 (770)
Q Consensus 334 ~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~--~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~ 411 (770)
.|.+ -..+..+--.|+|| +|-++.+-+ ..|..+|.. .+-..|...+..
T Consensus 133 -----~cqg-----~l~~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~R----s~dkgPF~tf~i--------------- 182 (311)
T KOG1446|consen 133 -----KCQG-----LLNLSGRPIAAFDP-EGLIFALANGSELIKLYDLR----SFDKGPFTTFSI--------------- 182 (311)
T ss_pred -----CCce-----EEecCCCcceeECC-CCcEEEEecCCCeEEEEEec----ccCCCCceeEcc---------------
Confidence 0100 00122344579999 888887763 356555521 111111111000
Q ss_pred cccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEc-CCCcE-EEeecCccCCCCCcCCCCCcccccC
Q psy4832 412 KSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVID-STGRM-FDFAGRWQSDKKNCNTTNCAEFEKN 488 (770)
Q Consensus 412 ~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~-~~G~i-~~~aG~~~~~~~~~~~~~~~~~~~~ 488 (770)
.......-+.|-|+++|. |.++...+ . +..+| .+|.+ .++.+...
T Consensus 183 -----------~~~~~~ew~~l~FS~dGK~iLlsT~~s-~---~~~lDAf~G~~~~tfs~~~~----------------- 230 (311)
T KOG1446|consen 183 -----------TDNDEAEWTDLEFSPDGKSILLSTNAS-F---IYLLDAFDGTVKSTFSGYPN----------------- 230 (311)
T ss_pred -----------CCCCccceeeeEEcCCCCEEEEEeCCC-c---EEEEEccCCcEeeeEeeccC-----------------
Confidence 001223458899999998 55555444 2 55666 36763 33443221
Q ss_pred ccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEee
Q psy4832 489 SKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILAL 527 (770)
Q Consensus 489 ~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i 527 (770)
..+.|-+-++.|||..++.-.++++|...
T Consensus 231 ----------~~~~~~~a~ftPds~Fvl~gs~dg~i~vw 259 (311)
T KOG1446|consen 231 ----------AGNLPLSATFTPDSKFVLSGSDDGTIHVW 259 (311)
T ss_pred ----------CCCcceeEEECCCCcEEEEecCCCcEEEE
Confidence 12346677888999887776666555433
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=94.59 E-value=5.8 Score=40.09 Aligned_cols=138 Identities=12% Similarity=0.120 Sum_probs=78.5
Q ss_pred ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCC
Q psy4832 199 NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDE 277 (770)
Q Consensus 199 ~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~ 277 (770)
+.|..+|+ +|+........ .....+...++. .++.+|+++ ..+.|+.++. .+|++.--.-...
T Consensus 3 g~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~-~~~~v~~~~-~~~~l~~~d~------~tG~~~W~~~~~~------- 66 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLG-PGIGGPVATAVP-DGGRVYVAS-GDGNLYALDA------KTGKVLWRFDLPG------- 66 (238)
T ss_dssp SEEEEEETTTTEEEEEEECS-SSCSSEEETEEE-ETTEEEEEE-TTSEEEEEET------TTSEEEEEEECSS-------
T ss_pred CEEEEEECCCCCEEEEEECC-CCCCCccceEEE-eCCEEEEEc-CCCEEEEEEC------CCCCEEEEeeccc-------
Confidence 45677776 67766554331 123333333553 378999985 5578888842 2565432211100
Q ss_pred CCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEEC-CCCcEEEee-cCCCCCCCcCCCccCCCcccccccccCc
Q psy4832 278 TNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVS-PEGIIHTLI-GHHKHHNIWSPFNCHRSFPASTAQLQWP 354 (770)
Q Consensus 278 ~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id-~~G~i~t~~-g~~~~~~~~~p~~~~~~~~~~~~~l~~P 354 (770)
.+..+ ..+ .++.|||....+ |+.+| .+|++.--. ..... ...+..+
T Consensus 67 ------------~~~~~--~~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~----------------~~~~~~~ 115 (238)
T PF13360_consen 67 ------------PISGA--PVV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP----------------PAGVRSS 115 (238)
T ss_dssp ------------CGGSG--EEE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC----------------TCSTB--
T ss_pred ------------cccce--eee-cccccccccceeeeEecccCCcceeeeecccccc----------------ccccccc
Confidence 01111 233 367899988666 89998 788775432 21110 1113445
Q ss_pred ceEEEeCCCCeEEEEe-CCEEEEEc-CCCcEEE
Q psy4832 355 TGLALSPLDDSLHFID-DRVIFKLT-NDLKVKI 385 (770)
Q Consensus 355 ~gla~d~~~g~lyv~D-~~~I~~i~-~~G~v~~ 385 (770)
...+++ ++.+|+.. ++.|+.++ .+|++..
T Consensus 116 ~~~~~~--~~~~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 116 SSPAVD--GDRLYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp SEEEEE--TTEEEEEETCSEEEEEETTTTEEEE
T ss_pred cCceEe--cCEEEEEeccCcEEEEecCCCcEEE
Confidence 566666 67889988 78999999 5687643
|
... |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=10 Score=42.66 Aligned_cols=64 Identities=23% Similarity=0.180 Sum_probs=35.8
Q ss_pred eEEEEcCCCC-E-EEEeC---ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeC--CCcEEEEEe
Q psy4832 183 VALTSGPDGS-L-YVGDF---NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDA--EKHQILRVL 250 (770)
Q Consensus 183 ~~la~~~dG~-l-yv~d~---~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~--~~~~I~~i~ 250 (770)
...++.|||. | |++.. ..|+.++.+ |+...+.... .....++++|.+..|+++.. ++.+|+.++
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~----~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d 273 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP----RHNGAPAFSPDGSKLAFALSKTGSLNLYVMD 273 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC----CCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence 4567889986 3 33322 367777654 4444433211 11235789985556777633 334688775
|
|
| >PF15283 DUF4595: Domain of unknown function (DUF4595) with porin-like fold | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.68 Score=46.02 Aligned_cols=97 Identities=19% Similarity=0.252 Sum_probs=60.6
Q ss_pred eec-CceEEEEEe----------cCCceEEEEEeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEEEeCCCCeEEEEEEc
Q psy4832 633 KLT-NDLKIRALK----------KGRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLISLVYD 701 (770)
Q Consensus 633 ~~~-~g~l~~~~~----------~~g~~~~y~YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~~~p~~g~~~~~~yd 701 (770)
.|+ .|+|++.+. .....++|.|++. +.+ .++..|.+..|..+.++.....+....+..-....|.||
T Consensus 2 ~yd~~Grl~~~~~~~~~~~~~~~~~~~~~~~ty~~~-~iv-~t~~~~~~~t~~Ln~~G~v~~~~~~~~~~~~~t~~FtYn 79 (197)
T PF15283_consen 2 EYDAKGRLISITTTQEYEAGFEFKEENVTTYTYSPN-KIV-VTDEEGNVSTYTLNDNGYVTSCVSQDYEGYTDTYTFTYN 79 (197)
T ss_pred cCCCCCCEEEEEEecccccccceeeeEEEEEEECCC-EEE-EEeCCCCEEEEEEccCCcEEEEEEEccCCCEEEEEEEEC
Confidence 344 378876663 1244567888743 333 377788888888887776655555333335578899999
Q ss_pred cCCcEeEEEec-Cc---EEEEEeCCCCCeEEEEcC
Q psy4832 702 ERGFLIFAQMF-RH---KYYIATDQCGTPVMVFNQ 732 (770)
Q Consensus 702 ~~G~l~~~~~~-~~---~~~~~~d~~G~~~~~~d~ 732 (770)
++|+|+.+... +. ...+.+. .|.++.+...
T Consensus 80 ~~~qL~~i~~~~~~~~~~~~itw~-nGni~~i~~~ 113 (197)
T PF15283_consen 80 ADGQLTKITESNNDSYSSYTITWE-NGNITSITTK 113 (197)
T ss_pred CCCceEEEEEECCCceEEEEEEEE-CCCEEEEEEe
Confidence 99999999944 33 2333333 3666665443
|
|
| >PF06788 UPF0257: Uncharacterised protein family (UPF0257); InterPro: IPR010646 This is a group of proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.46 E-value=3 Score=42.11 Aligned_cols=35 Identities=20% Similarity=0.405 Sum_probs=20.9
Q ss_pred EEEEEeCCCCEEEEEcCCCCEEEEEecCCCCCeeEE
Q psy4832 650 VTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVT 685 (770)
Q Consensus 650 ~~y~YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~ 685 (770)
+.|+||+.|=++......- ..+|+|+..+.|...+
T Consensus 123 l~~~~nd~GfI~~~~~~e~-~~~Y~Yd~~g~pl~~t 157 (236)
T PF06788_consen 123 LTYEYNDNGFIVSAKGKET-KVTYRYDDEGFPLGKT 157 (236)
T ss_pred eEEEECCCcEEEEeccCCc-ceEEEECCCCCccceE
Confidence 4578887776665433322 2667777777664444
|
; GO: 0005886 plasma membrane |
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=94.44 E-value=9.9 Score=42.07 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=76.9
Q ss_pred cCceEEEEcCCCCEEEEeCc-eEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC
Q psy4832 180 LTPVALTSGPDGSLYVGDFN-LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP 258 (770)
Q Consensus 180 ~~P~~la~~~dG~lyv~d~~-~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~ 258 (770)
..-..|++.++|.+.-+|.+ .|..+++.+...+.... .--..-+.|+.- .+|.|.- -...++|...+
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~--aH~ggv~~L~~l-r~GtllS-GgKDRki~~Wd-------- 314 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH--AHDGGVFSLCML-RDGTLLS-GGKDRKIILWD-------- 314 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee--ecCCceEEEEEe-cCccEee-cCccceEEecc--------
Confidence 44567888888888888884 77777776654433211 122234566666 4666654 33344454442
Q ss_pred CCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECCC-CcEEEeecCCCCCCCcC
Q psy4832 259 SINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSPE-GIIHTLIGHHKHHNIWS 336 (770)
Q Consensus 259 ~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~~-G~i~t~~g~~~~~~~~~ 336 (770)
.++..+.... ...++..|+-|+-. .+.|||.-+.| |..=+.+ +.-.++.|.+.
T Consensus 315 -~~y~k~r~~e-----------------lPe~~G~iRtv~e~-~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~d------ 369 (626)
T KOG2106|consen 315 -DNYRKLRETE-----------------LPEQFGPIRTVAEG-KGDILVGTTRNFILQGTLENGFTLTVQGHGD------ 369 (626)
T ss_pred -cccccccccc-----------------CchhcCCeeEEecC-CCcEEEeeccceEEEeeecCCceEEEEeccc------
Confidence 2232222111 11223456666655 34499988887 6654433 33334444432
Q ss_pred CCccCCCcccccccccCcceEEEeCCCCeEEEEe
Q psy4832 337 PFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID 370 (770)
Q Consensus 337 p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D 370 (770)
.-.|+|..| +.++|++-
T Consensus 370 ----------------elwgla~hp-s~~q~~T~ 386 (626)
T KOG2106|consen 370 ----------------ELWGLATHP-SKNQLLTC 386 (626)
T ss_pred ----------------ceeeEEcCC-Chhheeec
Confidence 245899999 88888876
|
|
| >PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.94 Score=45.52 Aligned_cols=162 Identities=14% Similarity=0.167 Sum_probs=74.8
Q ss_pred cCcceEEEccCCcEEEEeCCCeEEECC--CC-----cEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC
Q psy4832 292 SHPKGLAIKADKTMFIADGTNIRVVSP--EG-----IIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD 364 (770)
Q Consensus 292 ~~P~gIavd~~G~lYvaD~~~Ir~id~--~G-----~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g 364 (770)
+.=.-|+..|+|.||.....++++-.+ ++ ...+.++.++ .+.=..|++++ +|
T Consensus 34 ~~~~~i~~~P~g~lY~I~~~~lY~~~~~~~~~~~~~~~~~~Ig~g~--------------------W~~F~~i~~d~-~G 92 (229)
T PF14517_consen 34 NNFRDIAAGPNGRLYAIRNDGLYRGSPSSSGGNTWDSGSKQIGDGG--------------------WNSFKFIFFDP-TG 92 (229)
T ss_dssp TT-SEEEE-TTS-EEEEETTEEEEES---STT--HHHH-EEEE-S---------------------GGG-SEEEE-T-TS
T ss_pred cccceEEEcCCceEEEEECCceEEecCCccCcccccccCcccccCc--------------------ccceeEEEecC-Cc
Confidence 344578889999999998766666531 11 1112222221 12223799999 99
Q ss_pred eEEEEe-CCEEEEEcCC--CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCE
Q psy4832 365 SLHFID-DRVIFKLTND--LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDL 441 (770)
Q Consensus 365 ~lyv~D-~~~I~~i~~~--G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~l 441 (770)
.||..+ +..++|..+. +...-..+.+. .......+....|.++++|.|
T Consensus 93 ~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~-----------------------------~iG~~GW~~f~~vfa~~~GvL 143 (229)
T PF14517_consen 93 VLYAVTPDGKLYRHPRPTNGSDNWIGGSGK-----------------------------KIGGTGWNDFDAVFAGPNGVL 143 (229)
T ss_dssp -EEEEETT-EEEEES---STT--HHH-HSE-----------------------------EEE-SSGGGEEEEEE-TTS-E
T ss_pred cEEEeccccceeeccCCCccCcchhhccce-----------------------------ecccCCCccceEEEeCCCccE
Confidence 999877 4567666521 11111000000 000122345788999999999
Q ss_pred EEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCC
Q psy4832 442 YIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGS 521 (770)
Q Consensus 442 yVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~ 521 (770)
|..+.+. ++++. ..|++.-..... ...+.....+..+.-|..+|+|.||.++ .+
T Consensus 144 Y~i~~dg-~~~~~--~~p~~~~~~W~~----------------------~s~~v~~~gw~~~~~i~~~~~g~L~~V~-~~ 197 (229)
T PF14517_consen 144 YAITPDG-RLYRR--YRPDGGSDRWLS----------------------GSGLVGGGGWDSFHFIFFSPDGNLWAVK-SN 197 (229)
T ss_dssp EEEETTE--EEEE-----SSTT--HHH----------------------H-EEEESSSGGGEEEEEE-TTS-EEEE--ET
T ss_pred EEEcCCC-ceEEe--CCCCCCCCcccc----------------------ccceeccCCcccceEEeeCCCCcEEEEe-cC
Confidence 9999766 43332 233322000000 0000111224558889999999999995 45
Q ss_pred ceEEeeec
Q psy4832 522 LHILALQH 529 (770)
Q Consensus 522 ~~I~~i~~ 529 (770)
+.++|-.+
T Consensus 198 G~lyr~~~ 205 (229)
T PF14517_consen 198 GKLYRGRP 205 (229)
T ss_dssp TEEEEES-
T ss_pred CEEeccCC
Confidence 57765433
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=94.30 E-value=4.8 Score=43.40 Aligned_cols=173 Identities=16% Similarity=0.194 Sum_probs=95.6
Q ss_pred EEEcCCCCEEEEeC--ceEEEEc-CCCcEEEEeccCcccccceeEEEEeCCC-CcEEEEeCCCc--EEEEEeccCCccCC
Q psy4832 185 LTSGPDGSLYVGDF--NLVRRLT-PEGNVFTVLQLSATQVSYQYYLALSPAD-GHLYISDAEKH--QILRVLSLESVADP 258 (770)
Q Consensus 185 la~~~dG~lyv~d~--~~I~~i~-~~G~v~~~~~~~~~~~~~p~~lav~p~~-g~lyvsd~~~~--~I~~i~~~~~~~~~ 258 (770)
..+..|+.++++-. +.+..+. ++++....+. +-...-.++.++|.. +.-.++-...+ ++|+++...
T Consensus 181 ~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~---gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~----- 252 (459)
T KOG0272|consen 181 CSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLR---GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET----- 252 (459)
T ss_pred eEeecCCCeEEEeecCCceeEeecCCcceeEEEe---ccccceeeEEEccCCCccceeeeccCCceeeeccCCCc-----
Confidence 34456888888765 4444444 4555554442 233456788888863 43334433333 344442111
Q ss_pred CCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCC--CcEEEeecCCCCCCC
Q psy4832 259 SINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPE--GIIHTLIGHHKHHNI 334 (770)
Q Consensus 259 ~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~--G~i~t~~g~~~~~~~ 334 (770)
.+..+. ..+..-..++++|+|....+-... -|..|.. -.+...-|.
T Consensus 253 --~l~~l~----------------------gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH------ 302 (459)
T KOG0272|consen 253 --PLQDLE----------------------GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH------ 302 (459)
T ss_pred --chhhhh----------------------cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc------
Confidence 111111 122345578999999877664433 3333322 122111111
Q ss_pred cCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC----CEEEEEcCCCcEEEEecCCCCCCCCCCCCcccccccccc
Q psy4832 335 WSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD----RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKT 410 (770)
Q Consensus 335 ~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~----~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~ 410 (770)
=..-.+|++.+ +|.|..+-. +||+-+...-.+..++|.
T Consensus 303 ----------------s~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH--------------------- 344 (459)
T KOG0272|consen 303 ----------------SKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGH--------------------- 344 (459)
T ss_pred ----------------ccccceeEecC-CCceeeccCccchhheeecccCcEEEEeccc---------------------
Confidence 11345899999 999988752 677766444445566652
Q ss_pred ccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCC
Q psy4832 411 KKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDAR 449 (770)
Q Consensus 411 ~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ 449 (770)
+....+|+++|+|....+-+..+
T Consensus 345 ----------------~k~I~~V~fsPNGy~lATgs~Dn 367 (459)
T KOG0272|consen 345 ----------------IKEILSVAFSPNGYHLATGSSDN 367 (459)
T ss_pred ----------------ccceeeEeECCCceEEeecCCCC
Confidence 23468999999999888777654
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=94.17 E-value=14 Score=43.77 Aligned_cols=146 Identities=16% Similarity=0.249 Sum_probs=78.9
Q ss_pred ceEEEEcCCCC-EEEEeCc-eEEEEcCCCc--EEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 182 PVALTSGPDGS-LYVGDFN-LVRRLTPEGN--VFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 182 P~~la~~~dG~-lyv~d~~-~I~~i~~~G~--v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
=..|++|++|+ |++++.+ .||+++..-. -...+.. .-..-.+++.. .+.+++-+.++.|.++..
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~---~g~~v~~ia~~---s~~f~~~s~~~tv~~y~f------ 83 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI---SGELVSSIACY---SNHFLTGSEQNTVLRYKF------ 83 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc---cCceeEEEeec---ccceEEeeccceEEEeeC------
Confidence 36789999987 5556665 5666653211 0011100 00112455554 346666677778777742
Q ss_pred CCCcEEEEECCCccccCCCCCCcCCCcccccccccCc-ceEEEccCCcEEEEeCCC--eEEECCC--CcEEEeecCCCCC
Q psy4832 258 PSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHP-KGLAIKADKTMFIADGTN--IRVVSPE--GIIHTLIGHHKHH 332 (770)
Q Consensus 258 ~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P-~gIavd~~G~lYvaD~~~--Ir~id~~--G~i~t~~g~~~~~ 332 (770)
+++.... .-++|..| +.++|+.+|++.++-+.. |..++.+ +.+..+-|...
T Consensus 84 ps~~~~~----------------------iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a-- 139 (933)
T KOG1274|consen 84 PSGEEDT----------------------ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA-- 139 (933)
T ss_pred CCCCccc----------------------eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC--
Confidence 2222111 11334444 578888888877765444 5555532 34444444332
Q ss_pred CCcCCCccCCCcccccccccCcceEEEeCCCCeEEE-Ee-CCEEEEEc-CCCcEE
Q psy4832 333 NIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHF-ID-DRVIFKLT-NDLKVK 384 (770)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv-~D-~~~I~~i~-~~G~v~ 384 (770)
.-.+|.++| ++++.+ ++ ++.|+.++ .++.+.
T Consensus 140 --------------------pVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~ 173 (933)
T KOG1274|consen 140 --------------------PVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILS 173 (933)
T ss_pred --------------------ceeeeeEcC-CCCEEEEEecCceEEEEEcccchhh
Confidence 124788899 776554 44 67777777 556544
|
|
| >PF15283 DUF4595: Domain of unknown function (DUF4595) with porin-like fold | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.98 Score=44.90 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=21.1
Q ss_pred CceEEEEEe----cCCceEEEEEeCCCCEEEEEcCCCC---EEEEEecC
Q psy4832 636 NDLKIRALK----KGRFDVTYDYDHLDRLSVRKDNYGN---ITQFFYNN 677 (770)
Q Consensus 636 ~g~l~~~~~----~~g~~~~y~YD~~grlv~~~d~~G~---~~~~~y~~ 677 (770)
+|.+++... ..-....|.||+.|+|+..+-..+. ...+.|.+
T Consensus 56 ~G~v~~~~~~~~~~~~~t~~FtYn~~~qL~~i~~~~~~~~~~~~itw~n 104 (197)
T PF15283_consen 56 NGYVTSCVSQDYEGYTDTYTFTYNADGQLTKITESNNDSYSSYTITWEN 104 (197)
T ss_pred CCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEECCCceEEEEEEEEC
Confidence 555544443 1224456666666666654443333 35555554
|
|
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.12 Score=36.93 Aligned_cols=32 Identities=22% Similarity=0.117 Sum_probs=28.7
Q ss_pred ccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 219 TQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 219 ~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
.++..|.+||+|+.++.||++|...+.|.+.+
T Consensus 6 ~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~ 37 (43)
T smart00135 6 EGLGHPNGLAVDWIEGRLYWTDWGLDVIEVAN 37 (43)
T ss_pred CCCCCcCEEEEeecCCEEEEEeCCCCEEEEEe
Confidence 36788999999999999999999999998884
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=11 Score=42.28 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=35.1
Q ss_pred EEEEcCCCC-EEEEeC----ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeC--CCcEEEEEe
Q psy4832 184 ALTSGPDGS-LYVGDF----NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDA--EKHQILRVL 250 (770)
Q Consensus 184 ~la~~~dG~-lyv~d~----~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~--~~~~I~~i~ 250 (770)
..++.|||+ |+++.. ..|++++.+ |+...+.... .....++++|.+..|+++-. ++..|+.++
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~----g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d 278 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR----GINGAPSFSPDGRRLALTLSRDGNPEIYVMD 278 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC----CCccCceECCCCCEEEEEEeCCCCceEEEEE
Confidence 456778886 444432 268888865 4444333211 11235788985556766532 345788874
|
|
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.14 Score=36.52 Aligned_cols=33 Identities=30% Similarity=0.291 Sum_probs=27.5
Q ss_pred cccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCc
Q psy4832 350 QLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLK 382 (770)
Q Consensus 350 ~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~ 382 (770)
.+..|.+||+|+..+.||++| .+.|.+.+-+|.
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 477899999999888999999 467888877663
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.17 Score=36.50 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=30.8
Q ss_pred CCEEEEeC--c-eEEEEcCCCcEE-EEeccCcccccceeEEEEeC
Q psy4832 191 GSLYVGDF--N-LVRRLTPEGNVF-TVLQLSATQVSYQYYLALSP 231 (770)
Q Consensus 191 G~lyv~d~--~-~I~~i~~~G~v~-~~~~~~~~~~~~p~~lav~p 231 (770)
|.||++|. + .|.+.+.+|+-. +++ ...+.+|.+||+|+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi---~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVI---SDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEE---ESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEE---ECCCCCcCEEEECC
Confidence 57999998 5 899999998764 444 45699999999985
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=93.56 E-value=14 Score=40.65 Aligned_cols=192 Identities=15% Similarity=0.169 Sum_probs=100.9
Q ss_pred EEEEcCCCcEEEEcCCCceEEeeecCCcccC-------------------CCCcEEEeCCCCCcEEEEecCCceEEEEcC
Q psy4832 505 ALSVSPDGVVNVADQGSLHILALQHYLPTHD-------------------EHGEFKIPYPATNEIYVFNRYGQHITTRDM 565 (770)
Q Consensus 505 giav~~dG~lyvaD~~~~~I~~i~~~~~~~~-------------------~~g~~~i~~~~~~e~yvfd~~G~~~~t~d~ 565 (770)
-|.+...|.||+-|..+-++.++.-.+|..- ..|.+ |+--..+..++++..+.-...+--
T Consensus 280 rIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~-ia~VSRGkaFi~~~~~~~~iqv~~ 358 (668)
T COG4946 280 RIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDY-IALVSRGKAFIMRPWDGYSIQVGK 358 (668)
T ss_pred EEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcE-EEEEecCcEEEECCCCCeeEEcCC
Confidence 3677778999999999999999877655321 11222 222234566777666554444433
Q ss_pred CCCCcEEE-EEecCCCCCCceEEEECCCCCEEEEEEcCCCc-ceEeccCCcccc---CCCCcceee-cce---eeeeecC
Q psy4832 566 TSGKPRYS-FLYSKNTSFGKLSTITDASGNKINFLRDYSNV-AQLQWPTGLALS---PLDDSLHFI-DDR---VIFKLTN 636 (770)
Q Consensus 566 ~tg~~~y~-~~Yd~~~~~G~L~~vtd~~G~~~~~~~d~~~~-~~~~~p~G~~~~---~~d~~~~~~-~~~---~~~~~~~ 636 (770)
..+ .+|. +.-+ ++=..+-+.+|..+-++...++. .+++-+-|..+. ..++....+ +.+ ..+..++
T Consensus 359 ~~~-VrY~r~~~~-----~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn 432 (668)
T COG4946 359 KGG-VRYRRIQVD-----PEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred CCc-eEEEEEccC-----CcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence 333 3333 2222 23233444566666665443332 334444443111 222222222 111 1234456
Q ss_pred ceEEEEEec--CCceEEEEEeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEEEeCCCCeEEEEEEccCCc
Q psy4832 637 DLKIRALKK--GRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLISLVYDERGF 705 (770)
Q Consensus 637 g~l~~~~~~--~g~~~~y~YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~~~p~~g~~~~~~yd~~G~ 705 (770)
|... .+|. -|.-+.|.|.+.+|-++---|.|-.+|-.-=.+-....+..++.| .+--..=++|+.|+
T Consensus 433 gnv~-~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~-ta~DfsPaFD~d~r 501 (668)
T COG4946 433 GNVR-LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP-TAYDFSPAFDPDGR 501 (668)
T ss_pred CCee-EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC-cccccCcccCCCCc
Confidence 6655 3332 566778888888888888888887765433223333345556655 44444444555555
|
|
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.25 Score=35.55 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=17.8
Q ss_pred CeEEEEe--CC-EEEEEcCCCc-EEEEe
Q psy4832 364 DSLHFID--DR-VIFKLTNDLK-VKIVA 387 (770)
Q Consensus 364 g~lyv~D--~~-~I~~i~~~G~-v~~va 387 (770)
++||++| .+ +|.+.+.+|. .++++
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi 28 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVI 28 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEE
Confidence 5799999 47 8999888875 33443
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=93.01 E-value=19 Score=40.52 Aligned_cols=48 Identities=17% Similarity=-0.011 Sum_probs=24.9
Q ss_pred eEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCC--CcEEEEEe
Q psy4832 200 LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAE--KHQILRVL 250 (770)
Q Consensus 200 ~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~--~~~I~~i~ 250 (770)
+|..++.+|.....+..... .-...+++|.+..|+++... +..|+.++
T Consensus 177 ~L~~~D~dG~~~~~l~~~~~---~v~~p~wSPDG~~la~~s~~~~~~~I~~~d 226 (427)
T PRK02889 177 QLQISDADGQNAQSALSSPE---PIISPAWSPDGTKLAYVSFESKKPVVYVHD 226 (427)
T ss_pred EEEEECCCCCCceEeccCCC---CcccceEcCCCCEEEEEEccCCCcEEEEEE
Confidence 56666666654322211111 12356888855566555432 35688774
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.99 E-value=19 Score=40.53 Aligned_cols=68 Identities=19% Similarity=0.207 Sum_probs=37.8
Q ss_pred eEEEccCCc-EEEE-e-CC--CeEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-E-E
Q psy4832 296 GLAIKADKT-MFIA-D-GT--NIRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-L-H 367 (770)
Q Consensus 296 gIavd~~G~-lYva-D-~~--~Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-l-y 367 (770)
.+++.|||. |+++ + .+ +|+.++.+ |.+..+..... .....+++| +|+ | |
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~----------------------~~~~~~wSP-DG~~I~f 303 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS----------------------NNTEPTWFP-DSQNLAY 303 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCC----------------------CcCceEECC-CCCEEEE
Confidence 457888886 6654 3 22 28877765 45544432110 123567888 665 5 4
Q ss_pred EEeC---CEEEEEcCC-CcEEEE
Q psy4832 368 FIDD---RVIFKLTND-LKVKIV 386 (770)
Q Consensus 368 v~D~---~~I~~i~~~-G~v~~v 386 (770)
+++. ..|++++.+ |..+.+
T Consensus 304 ~s~~~g~~~Iy~~d~~~g~~~~l 326 (429)
T PRK03629 304 TSDQAGRPQVYKVNINGGAPQRI 326 (429)
T ss_pred EeCCCCCceEEEEECCCCCeEEe
Confidence 4442 378888865 344443
|
|
| >TIGR03696 Rhs_assc_core RHS repeat-associated core domain | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.038 Score=45.65 Aligned_cols=27 Identities=26% Similarity=0.641 Sum_probs=23.8
Q ss_pred eCCCCceEEecCCceeeeeccCccccCCC
Q psy4832 742 RSPYGHIVYDSNPYIYLPIDFCGGLLDQE 770 (770)
Q Consensus 742 yd~~G~~~~~~~~~~~~p~~~~G~~~d~~ 770 (770)
|+|||+++..+. ..+|++|+|+++|+|
T Consensus 1 Y~pfG~~~~~~~--~~~~~~f~G~~~d~~ 27 (76)
T TIGR03696 1 YDPFGEVLSEAP--VDNPLRFTGQYYDAE 27 (76)
T ss_pred CCCCCcccccCc--ccCCCCCCCEeEhhh
Confidence 799999998655 778999999999975
|
This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain. |
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=92.70 E-value=21 Score=40.45 Aligned_cols=149 Identities=21% Similarity=0.253 Sum_probs=84.9
Q ss_pred eEEEEcCCCCEEEEeC-c-eEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCC
Q psy4832 183 VALTSGPDGSLYVGDF-N-LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSI 260 (770)
Q Consensus 183 ~~la~~~dG~lyv~d~-~-~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g 260 (770)
..+.+.++|...++-. . .|+.....+...............-..++++| ++...++-....+|+.++.. +..-
T Consensus 163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~----~~~~ 237 (456)
T KOG0266|consen 163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLK----DDGR 237 (456)
T ss_pred EEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECC-CCcEEEEecCCceEEEeecc----CCCe
Confidence 3466788888755443 3 34433332211011111122344567899997 88888888888888777431 1112
Q ss_pred cEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCC-CcEEEeecCCCCCCCcCC
Q psy4832 261 NWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPE-GIIHTLIGHHKHHNIWSP 337 (770)
Q Consensus 261 ~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~-G~i~t~~g~~~~~~~~~p 337 (770)
.+.++.|- ......++|.++|+++++-... ||.-+.. |+....+....
T Consensus 238 ~~~~l~gH----------------------~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs------- 288 (456)
T KOG0266|consen 238 NLKTLKGH----------------------STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS------- 288 (456)
T ss_pred EEEEecCC----------------------CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC-------
Confidence 33444432 2235789999999877764433 7776644 44433332211
Q ss_pred CccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCC
Q psy4832 338 FNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTND 380 (770)
Q Consensus 338 ~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~ 380 (770)
..-+++++++ +++++++- .+.|+..+..
T Consensus 289 --------------~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~ 318 (456)
T KOG0266|consen 289 --------------DGISGLAFSP-DGNLLVSASYDGTIRVWDLE 318 (456)
T ss_pred --------------CceEEEEECC-CCCEEEEcCCCccEEEEECC
Confidence 1346789998 88776665 4677777744
|
|
| >PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A | Back alignment and domain information |
|---|
Probab=92.42 E-value=2.2 Score=42.88 Aligned_cols=157 Identities=16% Similarity=0.201 Sum_probs=78.1
Q ss_pred ccCceEEEEcCCCCEEEEeCceEEEEcC--CCcE-----EEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEec
Q psy4832 179 LLTPVALTSGPDGSLYVGDFNLVRRLTP--EGNV-----FTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLS 251 (770)
Q Consensus 179 l~~P~~la~~~dG~lyv~d~~~I~~i~~--~G~v-----~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~ 251 (770)
+..-..|+..|+|.||....+.+.+..+ ++.- .+.++ ......=..|+++| .|.||..+. +..++|...
T Consensus 33 w~~~~~i~~~P~g~lY~I~~~~lY~~~~~~~~~~~~~~~~~~Ig--~g~W~~F~~i~~d~-~G~LYaV~~-~G~lyR~~~ 108 (229)
T PF14517_consen 33 WNNFRDIAAGPNGRLYAIRNDGLYRGSPSSSGGNTWDSGSKQIG--DGGWNSFKFIFFDP-TGVLYAVTP-DGKLYRHPR 108 (229)
T ss_dssp -TT-SEEEE-TTS-EEEEETTEEEEES---STT--HHHH-EEEE---S-GGG-SEEEE-T-TS-EEEEET-T-EEEEES-
T ss_pred ccccceEEEcCCceEEEEECCceEEecCCccCcccccccCcccc--cCcccceeEEEecC-CccEEEecc-ccceeeccC
Confidence 5556778999999999999887777732 2211 12222 22233334899997 999997766 467777743
Q ss_pred cCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEE-CCCCc------EE
Q psy4832 252 LESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVV-SPEGI------IH 323 (770)
Q Consensus 252 ~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~i-d~~G~------i~ 323 (770)
-. ++...-..+.+... | ....+....|.++++|.||..+... +.+. .+++. -+
T Consensus 109 ~~-----~~~~~W~~~~~~~i--------G------~~GW~~f~~vfa~~~GvLY~i~~dg~~~~~~~p~~~~~~W~~~s 169 (229)
T PF14517_consen 109 PT-----NGSDNWIGGSGKKI--------G------GTGWNDFDAVFAGPNGVLYAITPDGRLYRRYRPDGGSDRWLSGS 169 (229)
T ss_dssp -------STT--HHH-HSEEE--------E-------SSGGGEEEEEE-TTS-EEEEETTE-EEEE---SSTT--HHHH-
T ss_pred CC-----ccCcchhhccceec--------c------cCCCccceEEEeCCCccEEEEcCCCceEEeCCCCCCCCcccccc
Confidence 11 11110001111110 0 1123456788899999999887665 4444 33321 12
Q ss_pred EeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe-CCEEEEEcC
Q psy4832 324 TLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID-DRVIFKLTN 379 (770)
Q Consensus 324 t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D-~~~I~~i~~ 379 (770)
.+++.. ....+.-|.+.| +|+||.++ ++.++|-.+
T Consensus 170 ~~v~~~--------------------gw~~~~~i~~~~-~g~L~~V~~~G~lyr~~~ 205 (229)
T PF14517_consen 170 GLVGGG--------------------GWDSFHFIFFSP-DGNLWAVKSNGKLYRGRP 205 (229)
T ss_dssp EEEESS--------------------SGGGEEEEEE-T-TS-EEEE-ETTEEEEES-
T ss_pred ceeccC--------------------CcccceEEeeCC-CCcEEEEecCCEEeccCC
Confidence 222211 233477889999 99999987 688888764
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=92.42 E-value=24 Score=40.31 Aligned_cols=160 Identities=17% Similarity=0.236 Sum_probs=79.3
Q ss_pred eEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCC
Q psy4832 200 LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETN 279 (770)
Q Consensus 200 ~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~ 279 (770)
...-+|.+|.++..+....... ..+-.-+ +|+|++... +++.++ |..|++....-.... .
T Consensus 129 ~~~~iD~~G~Vrw~~~~~~~~~---~~~~~l~-nG~ll~~~~--~~~~e~-------D~~G~v~~~~~l~~~-------~ 188 (477)
T PF05935_consen 129 YTYLIDNNGDVRWYLPLDSGSD---NSFKQLP-NGNLLIGSG--NRLYEI-------DLLGKVIWEYDLPGG-------Y 188 (477)
T ss_dssp EEEEEETTS-EEEEE-GGGT-----SSEEE-T-TS-EEEEEB--TEEEEE--------TT--EEEEEE--TT-------E
T ss_pred eEEEECCCccEEEEEccCcccc---ceeeEcC-CCCEEEecC--CceEEE-------cCCCCEEEeeecCCc-------c
Confidence 6777788888776653211111 0144443 788887766 788888 567775433211100 0
Q ss_pred cCCCcccccccccCcceEEEccCCcEEEEeC--------C------C-eEEECCCCcEEEeecCCCCCCCcC-----CCc
Q psy4832 280 CGDNGPALAAKLSHPKGLAIKADKTMFIADG--------T------N-IRVVSPEGIIHTLIGHHKHHNIWS-----PFN 339 (770)
Q Consensus 280 ~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~--------~------~-Ir~id~~G~i~t~~g~~~~~~~~~-----p~~ 339 (770)
...=+.+...++|++.+.-. . . |..+|++|.|....-....-..++ +.+
T Consensus 189 -----------~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~ 257 (477)
T PF05935_consen 189 -----------YDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYP 257 (477)
T ss_dssp -----------E-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--
T ss_pred -----------cccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCccccccccccc
Confidence 11235777888888555332 1 1 888999998887653322110000 000
Q ss_pred cCCCcccccccccC--cceEEEeCCCCeEEEEeC--CEEEEEc-CCCcEEEEecCCC
Q psy4832 340 CHRSFPASTAQLQW--PTGLALSPLDDSLHFIDD--RVIFKLT-NDLKVKIVAGIPL 391 (770)
Q Consensus 340 ~~~~~~~~~~~l~~--P~gla~d~~~g~lyv~D~--~~I~~i~-~~G~v~~vaG~~~ 391 (770)
+. ..........| -++|.+++.+++|+|+-. +.|++|+ .++++..++|.+.
T Consensus 258 ~~-~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 258 YG-DISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp SS-SSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred cc-ccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 00 01111122233 578999987788988883 6899999 8899999998654
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=92.32 E-value=6.9 Score=40.39 Aligned_cols=61 Identities=21% Similarity=0.404 Sum_probs=43.3
Q ss_pred CCCEEEEeC--ceEEEEcCC-CcEEEEeccC---------c---ccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 190 DGSLYVGDF--NLVRRLTPE-GNVFTVLQLS---------A---TQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 190 dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~---------~---~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
+|.||---. ++|.+|||. |.|..++.+. . ....--+|||.+|..+.+||+--.=.++++|.
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~ 259 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVK 259 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEE
T ss_pred cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEE
Confidence 788887665 699999975 9999877532 0 11234689999999999999987656777763
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=91.78 E-value=23 Score=38.84 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=17.8
Q ss_pred ccccceecCCeeEEEEcCCC-cEEEE
Q psy4832 493 LLTSTARFTSISALSVSPDG-VVNVA 517 (770)
Q Consensus 493 ~~~~~~~l~~P~giav~~dG-~lyva 517 (770)
.+.....+..+..|+++|.| .+-+.
T Consensus 475 fP~~n~~vg~vtc~aFSP~sG~lAvG 500 (514)
T KOG2055|consen 475 FPTSNTKVGHVTCMAFSPNSGYLAVG 500 (514)
T ss_pred CCCCCCcccceEEEEecCCCceEEee
Confidence 34456678899999999955 44444
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=91.55 E-value=28 Score=39.21 Aligned_cols=48 Identities=10% Similarity=0.078 Sum_probs=24.0
Q ss_pred eEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeC--CCcEEEEEe
Q psy4832 200 LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDA--EKHQILRVL 250 (770)
Q Consensus 200 ~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~--~~~~I~~i~ 250 (770)
.|..++.+|.....+.... ..-...+++|.+..|+++.. +...|+.++
T Consensus 183 ~l~~~d~dg~~~~~lt~~~---~~v~~p~wSpDG~~lay~s~~~g~~~i~~~d 232 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGS---SLVLTPRFSPNRQEITYMSYANGRPRVYLLD 232 (435)
T ss_pred EEEEECCCCCCcEEEecCC---CCeEeeEECCCCCEEEEEEecCCCCEEEEEE
Confidence 4555555554433221111 12346778885445554432 345788774
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=91.36 E-value=29 Score=39.05 Aligned_cols=26 Identities=23% Similarity=0.096 Sum_probs=15.8
Q ss_pred eEEEEeCCCCcEEEEeCC--CcEEEEEe
Q psy4832 225 YYLALSPADGHLYISDAE--KHQILRVL 250 (770)
Q Consensus 225 ~~lav~p~~g~lyvsd~~--~~~I~~i~ 250 (770)
...+++|.+..|+++... ..+|+.++
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~d 234 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQD 234 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEE
Confidence 456788855556665432 35687774
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=91.35 E-value=30 Score=39.25 Aligned_cols=110 Identities=23% Similarity=0.302 Sum_probs=69.4
Q ss_pred cCceEEEEcCCCCEEEEeC--ceEEEEcC--CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCc
Q psy4832 180 LTPVALTSGPDGSLYVGDF--NLVRRLTP--EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESV 255 (770)
Q Consensus 180 ~~P~~la~~~dG~lyv~d~--~~I~~i~~--~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~ 255 (770)
..-..+++.|+|.+.++-. ..|+.++. ++....++. +-....+.++|+| .++++++-...+.|+..+.
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~---gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~---- 275 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK---GHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDV---- 275 (456)
T ss_pred cceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec---CCCCceEEEEecC-CCCEEEEecCCCcEEEEec----
Confidence 4457889999999776544 35666654 345555552 3345569999998 5599999888777776642
Q ss_pred cCCCCcEE-EEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCC-Cc
Q psy4832 256 ADPSINWE-VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPE-GI 321 (770)
Q Consensus 256 ~~~~g~~~-~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~-G~ 321 (770)
..+... .+.+- -..-.++++.++|+++++-... |+..|.. |.
T Consensus 276 --~~~~~~~~l~~h----------------------s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 276 --RTGECVRKLKGH----------------------SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred --cCCeEEEeeecc----------------------CCceEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence 122322 22221 1123578999999877665433 8888865 44
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=91.18 E-value=29 Score=38.84 Aligned_cols=64 Identities=17% Similarity=0.138 Sum_probs=36.0
Q ss_pred eEEEEcCCCC-E-EEEeC---ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeC--CCcEEEEEe
Q psy4832 183 VALTSGPDGS-L-YVGDF---NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDA--EKHQILRVL 250 (770)
Q Consensus 183 ~~la~~~dG~-l-yv~d~---~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~--~~~~I~~i~ 250 (770)
...++.|||+ | |+++. ..|.+++.+ |+...+... . ......+++|.+..|+++-. ++..|+.++
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~-~---g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF-E---GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC-C---CCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 4557888886 4 44433 268887765 444443321 1 11235788885556765543 334788774
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=31 Score=38.99 Aligned_cols=68 Identities=19% Similarity=0.241 Sum_probs=36.7
Q ss_pred eEEEccCCc-EEEE-eC-CC--eEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEE
Q psy4832 296 GLAIKADKT-MFIA-DG-TN--IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHF 368 (770)
Q Consensus 296 gIavd~~G~-lYva-D~-~~--Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv 368 (770)
..++.++|. |+++ +. ++ |+.++.+ +.+..+.... ......+++| +|. |++
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~----------------------~~~~~p~wSp-DG~~I~f 322 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHR----------------------AIDTEPSWHP-DGKSLIF 322 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCC----------------------CCccceEECC-CCCEEEE
Confidence 357778876 6554 22 22 7777754 4554443211 0123456777 664 555
Q ss_pred Ee----CCEEEEEcCC-CcEEEE
Q psy4832 369 ID----DRVIFKLTND-LKVKIV 386 (770)
Q Consensus 369 ~D----~~~I~~i~~~-G~v~~v 386 (770)
+- ...|++++.+ |+.+.+
T Consensus 323 ~s~~~g~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 323 TSERGGKPQIYRVNLASGKVSRL 345 (448)
T ss_pred EECCCCCceEEEEECCCCCEEEE
Confidence 43 2468888854 555444
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=90.83 E-value=30 Score=38.37 Aligned_cols=63 Identities=21% Similarity=0.169 Sum_probs=35.3
Q ss_pred EEEEcCCCC-EEEEeC----ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCC--CcEEEEEe
Q psy4832 184 ALTSGPDGS-LYVGDF----NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAE--KHQILRVL 250 (770)
Q Consensus 184 ~la~~~dG~-lyv~d~----~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~--~~~I~~i~ 250 (770)
..++.|||. |+++.. ..|+.++.. |+...+.... .....++++|.+..|+++... +..|+.++
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~----~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d 264 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP----GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD 264 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence 345778886 333332 368788754 5444443211 123457889855567776443 34687774
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=90.78 E-value=31 Score=38.45 Aligned_cols=214 Identities=14% Similarity=0.099 Sum_probs=106.4
Q ss_pred ceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccC
Q psy4832 223 YQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKAD 302 (770)
Q Consensus 223 ~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~ 302 (770)
-...++++| .|.-+++-.-...|..++ -.|--..+--... ...+.-+.-+.+.+.+.
T Consensus 169 ~Vsal~~Dp-~GaR~~sGs~Dy~v~~wD-------f~gMdas~~~fr~---------------l~P~E~h~i~sl~ys~T 225 (641)
T KOG0772|consen 169 IVSALAVDP-SGARFVSGSLDYTVKFWD-------FQGMDASMRSFRQ---------------LQPCETHQINSLQYSVT 225 (641)
T ss_pred EEEEeeecC-CCceeeeccccceEEEEe-------cccccccchhhhc---------------cCcccccccceeeecCC
Confidence 356789997 777777777666776663 2221100000000 00011123456777777
Q ss_pred CcEEEEeCCC--eEEECCCCc-EEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--C--CEEE
Q psy4832 303 KTMFIADGTN--IRVVSPEGI-IHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--D--RVIF 375 (770)
Q Consensus 303 G~lYvaD~~~--Ir~id~~G~-i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~--~~I~ 375 (770)
|+.+++-+++ ++.+|.+|. +..+. .|..- ...+..+..+...-+.-++.|.+...|++- . -|||
T Consensus 226 g~~iLvvsg~aqakl~DRdG~~~~e~~-KGDQY--------I~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiW 296 (641)
T KOG0772|consen 226 GDQILVVSGSAQAKLLDRDGFEIVEFS-KGDQY--------IRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIW 296 (641)
T ss_pred CCeEEEEecCcceeEEccCCceeeeee-ccchh--------hhhhhccCCceeeeeccccccCcccceEEecCCCcEEEE
Confidence 8755554444 888999994 33322 21110 111222333344455666777555666664 2 3555
Q ss_pred EEcCC-CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeE
Q psy4832 376 KLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNAL 454 (770)
Q Consensus 376 ~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i 454 (770)
-++.. -+..++.-.+... .-..|..-+++++|.++.|--..+.| ++
T Consensus 297 dv~~~k~q~qVik~k~~~g--------------------------------~Rv~~tsC~~nrdg~~iAagc~DGSI-Q~ 343 (641)
T KOG0772|consen 297 DVNNTKSQLQVIKTKPAGG--------------------------------KRVPVTSCAWNRDGKLIAAGCLDGSI-QI 343 (641)
T ss_pred ecCCchhheeEEeeccCCC--------------------------------cccCceeeecCCCcchhhhcccCCce-ee
Confidence 54422 2333443222111 01236788899999986665555543 22
Q ss_pred EEEcCCCc-EEEeecCccCCCCCcCCCCCcccccCccCcccccceec--CCeeEEEEcCCCcEEEEcCC--CceEEeeec
Q psy4832 455 RVIDSTGR-MFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARF--TSISALSVSPDGVVNVADQG--SLHILALQH 529 (770)
Q Consensus 455 ~~i~~~G~-i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l--~~P~giav~~dG~lyvaD~~--~~~I~~i~~ 529 (770)
+..-.-+. ..... ..|.+ ...++|++++||+.+.+-.+ ..++|-++.
T Consensus 344 W~~~~~~v~p~~~v----------------------------k~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 344 WDKGSRTVRPVMKV----------------------------KDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred eecCCcccccceEe----------------------------eeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence 22110000 00001 11112 25788999999998887554 445666644
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=90.71 E-value=30 Score=38.16 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=66.6
Q ss_pred CC-cEEEEcCCCceEEeeecCCc-----ccCCCCcEEEeCCCCCcEEEEecCCceEEEEcCCCCCcEEEEEecCCCCCCc
Q psy4832 511 DG-VVNVADQGSLHILALQHYLP-----THDEHGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGK 584 (770)
Q Consensus 511 dG-~lyvaD~~~~~I~~i~~~~~-----~~~~~g~~~i~~~~~~e~yvfd~~G~~~~t~d~~tg~~~y~~~Yd~~~~~G~ 584 (770)
|| .|=|-|...+.+.++...+. ..+..|.+.+...+..|+|+.|-+...+..+|.+-.+....|.+..+ ++
T Consensus 380 dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n---sr 456 (668)
T COG4946 380 DGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN---SR 456 (668)
T ss_pred CCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC---ce
Confidence 55 56666666666666666543 12345566666677778888876655567777777777778888777 77
Q ss_pred eEEEECCCCCE---EEEEEcCC-CcceEeccCCcccc
Q psy4832 585 LSTITDASGNK---INFLRDYS-NVAQLQWPTGLALS 617 (770)
Q Consensus 585 L~~vtd~~G~~---~~~~~d~~-~~~~~~~p~G~~~~ 617 (770)
..+-.=++|-. ++++.-.+ +...+++|++..+.
T Consensus 457 ~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~Dfs 493 (668)
T COG4946 457 WIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFS 493 (668)
T ss_pred eEEEecCcceeeeeEEEEecCCCeEEEecCCcccccC
Confidence 76666666653 33333233 55667888876544
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=90.29 E-value=36 Score=38.27 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=34.5
Q ss_pred eEEEccCCc-EEEE-e-CCC--eEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEE
Q psy4832 296 GLAIKADKT-MFIA-D-GTN--IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHF 368 (770)
Q Consensus 296 gIavd~~G~-lYva-D-~~~--Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv 368 (770)
.+++.|+|. |+++ + .++ |+.++.+ +.+..+.+... .....+++| +|. |++
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~----------------------~~~~~~wSp-DG~~i~f 308 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAG----------------------NNTEPSWSP-DGQSILF 308 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCC----------------------CcCCEEECC-CCCEEEE
Confidence 467888886 5554 2 222 6777754 45544432210 123567888 775 555
Q ss_pred E-e---CCEEEEEcCCC
Q psy4832 369 I-D---DRVIFKLTNDL 381 (770)
Q Consensus 369 ~-D---~~~I~~i~~~G 381 (770)
+ + .-+|+.++.++
T Consensus 309 ~s~~~g~~~I~~~~~~~ 325 (429)
T PRK01742 309 TSDRSGSPQVYRMSASG 325 (429)
T ss_pred EECCCCCceEEEEECCC
Confidence 4 3 23677777554
|
|
| >PRK02939 lipoprotein; Reviewed | Back alignment and domain information |
|---|
Probab=90.23 E-value=22 Score=35.80 Aligned_cols=90 Identities=14% Similarity=0.121 Sum_probs=45.2
Q ss_pred EEEEEeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEEEeCCCCeEEE--EEEccCCc----EeEEE-ecC-----cEEE
Q psy4832 650 VTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLIS--LVYDERGF----LIFAQ-MFR-----HKYY 717 (770)
Q Consensus 650 ~~y~YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~~~p~~g~~~~--~~yd~~G~----l~~~~-~~~-----~~~~ 717 (770)
+.|+||+.|=++......- ..+|+|+..+.|...+ .+.++.+.+ ..||..++ .+++. ..+ ....
T Consensus 123 l~~~~nd~GfI~~~~~~~~-~~~Y~Yd~~g~P~~~t---~~~~~kv~sv~~~~~~d~~K~lD~t~~~~~~~~~i~~vk~~ 198 (236)
T PRK02939 123 VSWETDDNGFVIKASGKEM-QVEYRYDDEGYPLGKT---TKSNDKTLSVSATPSADPRKKLDYTAVTTLNNQQVGNVKQS 198 (236)
T ss_pred EEEEECCCceEEEeecCCC-ceEEEecCCCCceeeE---EecCCeEEEEEEecCCCCCCCcceEEEEEECCEEEEEEeee
Confidence 3377777666655444333 2467777766664333 233443332 34553322 12222 222 2334
Q ss_pred EEeCCCCCeEE----EEcCCCCEEEEEEeC
Q psy4832 718 IATDQCGTPVM----VFNQYGETVREIMRS 743 (770)
Q Consensus 718 ~~~d~~G~~~~----~~d~~G~~v~~~~yd 743 (770)
..||..+.|+. +.|++|+......|+
T Consensus 199 C~YD~~~np~~C~~l~~~~~g~~~~~~~~t 228 (236)
T PRK02939 199 CEYDSHANPVDCQLLIVDESVKPAVERTYT 228 (236)
T ss_pred EecCCCCCceeeEEEEECCCCcceeEEEee
Confidence 45677777764 566777665554443
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=90.07 E-value=49 Score=39.55 Aligned_cols=194 Identities=15% Similarity=0.124 Sum_probs=100.5
Q ss_pred cCCCeEEECCCccEEecccCCCeEEEEeccCc-cCC-ccCCCCCcccccccccCceEEEEcCCCCEEEEe--CceEEEEc
Q psy4832 130 FHEGILQKGDGSSLHLKHEFPRTVSVVMGTGL-QRP-LVCKDCDGVARDARLLTPVALTSGPDGSLYVGD--FNLVRRLT 205 (770)
Q Consensus 130 ~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~-~~~-~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d--~~~I~~i~ 205 (770)
--..|+++.+|+++++.. .++.|.++-.+-. .-| ..|. .| ..-.+++... +.|++- .+.|.+..
T Consensus 15 G~t~i~~d~~gefi~tcg-sdg~ir~~~~~sd~e~P~ti~~--~g-------~~v~~ia~~s--~~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCG-SDGDIRKWKTNSDEEEPETIDI--SG-------ELVSSIACYS--NHFLTGSEQNTVLRYK 82 (933)
T ss_pred ceEEEEEcCCCCEEEEec-CCCceEEeecCCcccCCchhhc--cC-------ceeEEEeecc--cceEEeeccceEEEee
Confidence 356789999999998888 7777777765333 111 0000 00 1123445443 334432 36676664
Q ss_pred -CCCcEEEEeccCcccccce-eEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCC
Q psy4832 206 -PEGNVFTVLQLSATQVSYQ-YYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDN 283 (770)
Q Consensus 206 -~~G~v~~~~~~~~~~~~~p-~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~ 283 (770)
+++..-+++ .+|.-| ..++|+ .+|...++-...-.|..++.. ......++.|--.
T Consensus 83 fps~~~~~iL----~Rftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~-----D~s~~~~lrgh~a------------- 139 (933)
T KOG1274|consen 83 FPSGEEDTIL----ARFTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLD-----DSSQEKVLRGHDA------------- 139 (933)
T ss_pred CCCCCcccee----eeeeccceEEEEe-cCCcEEEeecCceeEEEEecc-----ccchheeecccCC-------------
Confidence 455544443 234444 467888 477777776665555555421 1222222222100
Q ss_pred cccccccccCcceEEEccCCcEEEEeCCC--eEEEC-CCCcEEEeecCCCCCCCcCCCccCCCcccccccccCc-ceEEE
Q psy4832 284 GPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVS-PEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWP-TGLAL 359 (770)
Q Consensus 284 g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id-~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P-~gla~ 359 (770)
.-.+|.++|+|++..+-..+ ++.++ .++.+...+..-. +|.+ ..+..+ .-+++
T Consensus 140 ---------pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~--------k~n~------~~~s~i~~~~aW 196 (933)
T KOG1274|consen 140 ---------PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD--------KDNE------FILSRICTRLAW 196 (933)
T ss_pred ---------ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCC--------cccc------ccccceeeeeee
Confidence 12478888888865544333 66666 3454443332211 1111 111122 34788
Q ss_pred eCCCCeEEEEe-CCEEEEEcCCC
Q psy4832 360 SPLDDSLHFID-DRVIFKLTNDL 381 (770)
Q Consensus 360 d~~~g~lyv~D-~~~I~~i~~~G 381 (770)
.|..|.+-+.- .+.|..++.+|
T Consensus 197 ~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 197 HPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred cCCCCeEEeeccCCeEEEEccCC
Confidence 88557766654 57777777554
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=90.02 E-value=25 Score=36.18 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=82.0
Q ss_pred eEEEEcCCCCEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCC
Q psy4832 183 VALTSGPDGSLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPS 259 (770)
Q Consensus 183 ~~la~~~dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~ 259 (770)
.++++.+||+..++-. ..+|..|.. |+.+..|. ..-....+++|++ ++.-.|+-+..+.|.-.+..
T Consensus 67 ~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~---GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~------- 135 (315)
T KOG0279|consen 67 SDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFV---GHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTL------- 135 (315)
T ss_pred cceEEccCCceEEeccccceEEEEEecCCcEEEEEE---ecCCceEEEEecC-CCceeecCCCcceeeeeeec-------
Confidence 4567778888887655 356666755 45555552 2334567899997 77777787777777666322
Q ss_pred CcEE-EEECCCccccCCCCCCcCCCcccccccccCcceEEEccCC-cEEEEeCCC---eEEECCCC-c-EEEeecCCCCC
Q psy4832 260 INWE-VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADK-TMFIADGTN---IRVVSPEG-I-IHTLIGHHKHH 332 (770)
Q Consensus 260 g~~~-~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G-~lYvaD~~~---Ir~id~~G-~-i~t~~g~~~~~ 332 (770)
|... ++...++ -..-.-+.|.|+. +.+|..... ++.-|.++ + -.++.|...
T Consensus 136 g~ck~t~~~~~~--------------------~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~-- 193 (315)
T KOG0279|consen 136 GVCKYTIHEDSH--------------------REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG-- 193 (315)
T ss_pred ccEEEEEecCCC--------------------cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc--
Confidence 2211 1111110 1134567788764 556555443 66666655 2 233344321
Q ss_pred CCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEc
Q psy4832 333 NIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLT 378 (770)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~ 378 (770)
.-+-++++| ||.|...- .+.++-.+
T Consensus 194 --------------------~v~t~~vSp-DGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 194 --------------------YVNTVTVSP-DGSLCASGGKDGEAMLWD 220 (315)
T ss_pred --------------------cEEEEEECC-CCCEEecCCCCceEEEEE
Confidence 345789999 99988775 34444444
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=90.01 E-value=35 Score=37.78 Aligned_cols=57 Identities=9% Similarity=0.106 Sum_probs=35.2
Q ss_pred CCcEEEEeCCC-eEEECC-CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe-CCEEEEEc
Q psy4832 302 DKTMFIADGTN-IRVVSP-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID-DRVIFKLT 378 (770)
Q Consensus 302 ~G~lYvaD~~~-Ir~id~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D-~~~I~~i~ 378 (770)
++.||++.... +..+|. +|++.--. .+..+..++++ ++.||+.+ ++.|+.++
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~-----------------------~~~~~~~~~~~--~~~vy~~~~~g~l~ald 310 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKR-----------------------EYGSVNDFAVD--GGRIYLVDQNDRVYALD 310 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEee-----------------------cCCCccCcEEE--CCEEEEEcCCCeEEEEE
Confidence 67888877544 777774 46442211 01122334555 78999987 68899998
Q ss_pred C-CCcE
Q psy4832 379 N-DLKV 383 (770)
Q Consensus 379 ~-~G~v 383 (770)
. +|++
T Consensus 311 ~~tG~~ 316 (394)
T PRK11138 311 TRGGVE 316 (394)
T ss_pred CCCCcE
Confidence 4 5654
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=89.57 E-value=9.6 Score=41.91 Aligned_cols=192 Identities=16% Similarity=0.203 Sum_probs=110.7
Q ss_pred eEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc
Q psy4832 225 YYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT 304 (770)
Q Consensus 225 ~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~ 304 (770)
..+-+-|..+.|+.+-.-.++|..++.- +.-+-+.++.|-.. .-+.+++..+|.
T Consensus 218 sai~~fp~~~hLlLS~gmD~~vklW~vy----~~~~~lrtf~gH~k----------------------~Vrd~~~s~~g~ 271 (503)
T KOG0282|consen 218 SAIQWFPKKGHLLLSGGMDGLVKLWNVY----DDRRCLRTFKGHRK----------------------PVRDASFNNCGT 271 (503)
T ss_pred chhhhccceeeEEEecCCCceEEEEEEe----cCcceehhhhcchh----------------------hhhhhhccccCC
Confidence 4455667788899888888887766421 21122223332111 124677777787
Q ss_pred EEEEeCCC--eEEECC-CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEe--CCEEEEEc
Q psy4832 305 MFIADGTN--IRVVSP-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID--DRVIFKLT 378 (770)
Q Consensus 305 lYvaD~~~--Ir~id~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~ 378 (770)
=|.+-+.. |+..|. .|++..-+-.+ .-|+.+.+.| ++ ++|++- +.+|+.+|
T Consensus 272 ~fLS~sfD~~lKlwDtETG~~~~~f~~~----------------------~~~~cvkf~p-d~~n~fl~G~sd~ki~~wD 328 (503)
T KOG0282|consen 272 SFLSASFDRFLKLWDTETGQVLSRFHLD----------------------KVPTCVKFHP-DNQNIFLVGGSDKKIRQWD 328 (503)
T ss_pred eeeeeecceeeeeeccccceEEEEEecC----------------------CCceeeecCC-CCCcEEEEecCCCcEEEEe
Confidence 66665544 666664 36655433222 1377889999 55 888887 57888887
Q ss_pred C-CCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEE
Q psy4832 379 N-DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVI 457 (770)
Q Consensus 379 ~-~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i 457 (770)
. .|+|..- ....|.....|.|-++|.=||+.++...+ +|.-.
T Consensus 329 iRs~kvvqe------------------------------------Yd~hLg~i~~i~F~~~g~rFissSDdks~-riWe~ 371 (503)
T KOG0282|consen 329 IRSGKVVQE------------------------------------YDRHLGAILDITFVDEGRRFISSSDDKSV-RIWEN 371 (503)
T ss_pred ccchHHHHH------------------------------------HHhhhhheeeeEEccCCceEeeeccCccE-EEEEc
Confidence 3 3442110 11224456788888899988888776643 33333
Q ss_pred cCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeecCC
Q psy4832 458 DSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYL 531 (770)
Q Consensus 458 ~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~~ 531 (770)
...--+..++-.. .. .--.|++.|+|..+++-...++|..+....
T Consensus 372 ~~~v~ik~i~~~~----------------------------~h-smP~~~~~P~~~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 372 RIPVPIKNIADPE----------------------------MH-TMPCLTLHPNGKWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred CCCccchhhcchh----------------------------hc-cCcceecCCCCCeehhhccCceEEEEeccc
Confidence 2221122222111 11 112477788888888888777887775443
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=89.37 E-value=23 Score=40.38 Aligned_cols=138 Identities=19% Similarity=0.275 Sum_probs=69.3
Q ss_pred EEEcCCCCEEEEeCceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCC-------------CcEEEEEec
Q psy4832 185 LTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAE-------------KHQILRVLS 251 (770)
Q Consensus 185 la~~~dG~lyv~d~~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~-------------~~~I~~i~~ 251 (770)
+-..++|.|++...++++.++..|++......+......=..+...| +|++++.... ...|..+
T Consensus 153 ~~~l~nG~ll~~~~~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~-nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev-- 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSGNRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELP-NGNLLILASETKYVDEDKDVDTVEDVIVEV-- 229 (477)
T ss_dssp EEE-TTS-EEEEEBTEEEEE-TT--EEEEEE--TTEE-B-S-EEE-T-TS-EEEEEEETTEE-TS-EE---S-EEEEE--
T ss_pred eeEcCCCCEEEecCCceEEEcCCCCEEEeeecCCcccccccccEECC-CCCEEEEEeecccccCCCCccEecCEEEEE--
Confidence 55678999999998999999999998876654332112235677776 5655543331 2456666
Q ss_pred cCCccCCCCcEEEEECCCccccCCCC-----CCcCC-CcccccccccCcceEEEcc-CCcEEEEeCCC--eEEEC-CCCc
Q psy4832 252 LESVADPSINWEVAVGSGERCIPGDE-----TNCGD-NGPALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVS-PEGI 321 (770)
Q Consensus 252 ~~~~~~~~g~~~~vaG~g~~~~p~~~-----~~~g~-~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id-~~G~ 321 (770)
+++|++.-.--....-.|... ...++ .+......-.+-++|..++ ++.|+++-... |.+|| .+++
T Consensus 230 -----d~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~ 304 (477)
T PF05935_consen 230 -----DPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGK 304 (477)
T ss_dssp ------TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-
T ss_pred -----CCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCc
Confidence 456665544322222111110 00000 0001112223567899998 66677776544 99999 7899
Q ss_pred EEEeecCCC
Q psy4832 322 IHTLIGHHK 330 (770)
Q Consensus 322 i~t~~g~~~ 330 (770)
|.-++|...
T Consensus 305 i~Wilg~~~ 313 (477)
T PF05935_consen 305 IKWILGPPG 313 (477)
T ss_dssp EEEEES-ST
T ss_pred EEEEeCCCC
Confidence 998888754
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.37 E-value=16 Score=41.25 Aligned_cols=113 Identities=16% Similarity=0.184 Sum_probs=62.8
Q ss_pred eEEEccCCcEEEEeCCC-eEEECCCC--cEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeCC
Q psy4832 296 GLAIKADKTMFIADGTN-IRVVSPEG--IIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDR 372 (770)
Q Consensus 296 gIavd~~G~lYvaD~~~-Ir~id~~G--~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~~ 372 (770)
-..+|++|.+|+....+ +.+.+..- -+.... .+.+ ...-..|.-+| +++|++-..+
T Consensus 380 ~~~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~---------------agl~-----ss~V~aived~-dnsLWIGTs~ 438 (671)
T COG3292 380 TTLEDSRGRLWLGSMQNGLSRLDNKNEWAVLDED---------------AGLP-----SSEVSAIVEDP-DNSLWIGTSG 438 (671)
T ss_pred hhhhccCCcEEEEecccchhhhccCCcccccccc---------------cCCc-----ccceeeeeecC-CCCEEEeccC
Confidence 34456688899988775 65555332 111100 0000 11223566678 8889998877
Q ss_pred EEEEEcCC-CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCce
Q psy4832 373 VIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKV 451 (770)
Q Consensus 373 ~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri 451 (770)
-|.+.++. +++....-...+.. . -.....|+++++|.|+++-..+
T Consensus 439 Glvk~~pe~~~v~n~ln~~~~~l---~----------------------------~s~~~~lg~~~~g~Lw~a~g~g--- 484 (671)
T COG3292 439 GLVKRDPESGRVLNLLNPGSHGL---D----------------------------GSRVEQLGLGPDGRLWLAAGSG--- 484 (671)
T ss_pred CeEecCccccchhcccccccCcC---C----------------------------cchhhhhccCCCCceEEEecce---
Confidence 77777754 44443321111110 0 0124668889999999998754
Q ss_pred eeEEEEcCCCcEEE
Q psy4832 452 NALRVIDSTGRMFD 465 (770)
Q Consensus 452 ~~i~~i~~~G~i~~ 465 (770)
|...++.+++..
T Consensus 485 --va~~~sq~~~~~ 496 (671)
T COG3292 485 --VAAWESQRRMFV 496 (671)
T ss_pred --eeeeccccceec
Confidence 455555555543
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=89.26 E-value=23 Score=38.76 Aligned_cols=70 Identities=24% Similarity=0.305 Sum_probs=44.2
Q ss_pred ccccCceEEEEc--C-CCCEEE--EeC-c--eEEEEc--CCCcEE----EEeccCcccccceeEEEEeCCCCcEEEEeCC
Q psy4832 177 ARLLTPVALTSG--P-DGSLYV--GDF-N--LVRRLT--PEGNVF----TVLQLSATQVSYQYYLALSPADGHLYISDAE 242 (770)
Q Consensus 177 ~~l~~P~~la~~--~-dG~lyv--~d~-~--~I~~i~--~~G~v~----~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~ 242 (770)
..+..|.++|.- + +|.+|+ .+. + ..+++. .+|.+. +-|.. ...+.++++|...+.||+++..
T Consensus 153 ~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~----~sQ~EGCVVDDe~g~LYvgEE~ 228 (381)
T PF02333_consen 153 TDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV----GSQPEGCVVDDETGRLYVGEED 228 (381)
T ss_dssp -SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-----SS-EEEEEEETTTTEEEEEETT
T ss_pred cccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC----CCcceEEEEecccCCEEEecCc
Confidence 456678999973 3 677765 333 2 233333 456543 33332 2468999999999999999976
Q ss_pred CcEEEEEec
Q psy4832 243 KHQILRVLS 251 (770)
Q Consensus 243 ~~~I~~i~~ 251 (770)
.-||++..
T Consensus 229 -~GIW~y~A 236 (381)
T PF02333_consen 229 -VGIWRYDA 236 (381)
T ss_dssp -TEEEEEES
T ss_pred -cEEEEEec
Confidence 68999975
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=88.60 E-value=38 Score=36.34 Aligned_cols=111 Identities=19% Similarity=0.210 Sum_probs=56.7
Q ss_pred CCEEEEeC------ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcE---------EEEEeccCC
Q psy4832 191 GSLYVGDF------NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQ---------ILRVLSLES 254 (770)
Q Consensus 191 G~lyv~d~------~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~---------I~~i~~~~~ 254 (770)
..+||.|. .++..+|.+ +++.-.+ .+.+.. .++++|....+|++++--.| |..++..
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi---~~g~~~--~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-- 75 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMI---DTGFLG--NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-- 75 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEE---EEESSE--EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT--
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEe---ecccCC--ceeECCCCCEEEEEEEEEeccccccceeEEEEEecC--
Confidence 35888886 388888865 5554333 233332 37788888889998764222 2223211
Q ss_pred ccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC---eEEECCC-CcEEEee
Q psy4832 255 VADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN---IRVVSPE-GIIHTLI 326 (770)
Q Consensus 255 ~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~---Ir~id~~-G~i~t~~ 326 (770)
+..-..++..-.+. ....+..+.-+++..+|. +||....- |-+||.. +++..-+
T Consensus 76 --TL~~~~EI~iP~k~----------------R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei 134 (342)
T PF06433_consen 76 --TLSPTGEIEIPPKP----------------RAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI 134 (342)
T ss_dssp --TTEEEEEEEETTS-----------------B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE
T ss_pred --cCcccceEecCCcc----------------hheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee
Confidence 11111222221100 012245677888887776 88876543 8888854 4555444
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=88.48 E-value=46 Score=37.11 Aligned_cols=69 Identities=22% Similarity=0.418 Sum_probs=48.3
Q ss_pred eeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEc
Q psy4832 430 LTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVS 509 (770)
Q Consensus 430 P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~ 509 (770)
.+.+.++|+|..+..-+.++.| -|.+++.+|+....+|.-.. .-...|-.+
T Consensus 450 ls~v~ysp~G~~lAvgs~d~~i-yiy~Vs~~g~~y~r~~k~~g----------------------------s~ithLDwS 500 (626)
T KOG2106|consen 450 LSVVRYSPDGAFLAVGSHDNHI-YIYRVSANGRKYSRVGKCSG----------------------------SPITHLDWS 500 (626)
T ss_pred eEEEEEcCCCCEEEEecCCCeE-EEEEECCCCcEEEEeeeecC----------------------------ceeEEeeec
Confidence 3678899999866655555555 57788999988777765421 124568888
Q ss_pred CCCcEEEEcCCCceEEee
Q psy4832 510 PDGVVNVADQGSLHILAL 527 (770)
Q Consensus 510 ~dG~lyvaD~~~~~I~~i 527 (770)
+|+..+++.++...|.--
T Consensus 501 ~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 501 SDSQFLVSNSGDYEILYW 518 (626)
T ss_pred CCCceEEeccCceEEEEE
Confidence 898888888777666433
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=88.03 E-value=48 Score=36.77 Aligned_cols=26 Identities=23% Similarity=0.077 Sum_probs=15.8
Q ss_pred eEEEEeCCCCcEEEEeCCC--cEEEEEe
Q psy4832 225 YYLALSPADGHLYISDAEK--HQILRVL 250 (770)
Q Consensus 225 ~~lav~p~~g~lyvsd~~~--~~I~~i~ 250 (770)
...+++|.+..|+++.... ..|+.++
T Consensus 193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d 220 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFESGKPEIYVQD 220 (417)
T ss_pred ecccCCCCCCEEEEEEcCCCCcEEEEEE
Confidence 3456887555666665433 5677774
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=87.87 E-value=35 Score=35.05 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=87.8
Q ss_pred CceEEEEcCC-CCEEEEeC--ceEEEEcCCC-c-EE--EEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccC
Q psy4832 181 TPVALTSGPD-GSLYVGDF--NLVRRLTPEG-N-VF--TVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLE 253 (770)
Q Consensus 181 ~P~~la~~~d-G~lyv~d~--~~I~~i~~~G-~-v~--~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~ 253 (770)
+-+.+|+.|- |.|+-+-. ..||..+..+ . .. +++. ..--..-..+|.+| .|++..+-+....+....
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld--~~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw~--- 89 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD--DGHKRSVRSVAWSP-HGRYLASASFDATVVIWK--- 89 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc--ccchheeeeeeecC-CCcEEEEeeccceEEEee---
Confidence 5688899986 88666544 3677766552 2 22 2331 22334567899998 666555544444444443
Q ss_pred CccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC----eEEECCCCcEEEeecCC
Q psy4832 254 SVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN----IRVVSPEGIIHTLIGHH 329 (770)
Q Consensus 254 ~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~----Ir~id~~G~i~t~~g~~ 329 (770)
+.++.++.++-- +..-+.-+.+|+.++|++.-+.+.. |+.++.++.+..++=-
T Consensus 90 ---k~~~efecv~~l-------------------EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL- 146 (312)
T KOG0645|consen 90 ---KEDGEFECVATL-------------------EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL- 146 (312)
T ss_pred ---cCCCceeEEeee-------------------eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee-
Confidence 345555554421 1223456799999999877666544 7888877766554311
Q ss_pred CCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEc
Q psy4832 330 KHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLT 378 (770)
Q Consensus 330 ~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~ 378 (770)
+...+--..+.+.| ...|.++- .+.|..+.
T Consensus 147 ------------------~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~ 178 (312)
T KOG0645|consen 147 ------------------QEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYR 178 (312)
T ss_pred ------------------ccccccccEEEEcC-CcceeEEeccCCeEEEEe
Confidence 11233345788888 77777765 34444443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=87.82 E-value=47 Score=36.41 Aligned_cols=55 Identities=16% Similarity=0.299 Sum_probs=36.0
Q ss_pred CCCEEEEeC-ceEEEEc-CCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 190 DGSLYVGDF-NLVRRLT-PEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 190 dG~lyv~d~-~~I~~i~-~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
++.||+++. +.|..++ .+|++......... + ...++++ ++.+|+... ++.++.++
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~-~--~~~p~v~--~~~v~v~~~-~g~l~ald 121 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDER-L--SGGVGAD--GGLVFVGTE-KGEVIALD 121 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCC-c--ccceEEc--CCEEEEEcC-CCEEEEEE
Confidence 678999877 4899998 57887755433221 1 1234554 678888764 46788885
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=87.79 E-value=41 Score=35.75 Aligned_cols=127 Identities=16% Similarity=0.191 Sum_probs=73.6
Q ss_pred ccccCceEEEEcCCCCEEEEeC--ceEEEEc-CCCcEEEEeccC--------cccccceeEEEEe---CCCCcEEEEeC-
Q psy4832 177 ARLLTPVALTSGPDGSLYVGDF--NLVRRLT-PEGNVFTVLQLS--------ATQVSYQYYLALS---PADGHLYISDA- 241 (770)
Q Consensus 177 ~~l~~P~~la~~~dG~lyv~d~--~~I~~i~-~~G~v~~~~~~~--------~~~~~~p~~lav~---p~~g~lyvsd~- 241 (770)
--.....+|..+++|+++|+-. +.|.+|+ .+|++...++.. ...+.+.....+. +.++.|-+-|.
T Consensus 141 ~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 141 WDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred CCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 3445567888889999999877 4899999 679999887532 1225555555554 23555555554
Q ss_pred ---------CCcEEEEEeccCCccCCCCc-EEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC
Q psy4832 242 ---------EKHQILRVLSLESVADPSIN-WEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT 311 (770)
Q Consensus 242 ---------~~~~I~~i~~~~~~~~~~g~-~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~ 311 (770)
...+|+.++ +... ++.+...-.. ...-.+. ..-.+-.-++|+++|..+.
T Consensus 221 ~~~~~~~~~s~~~v~~ld-------~~~~~~~~~~~~~~~---~~~~~s~-----------~~G~~Q~L~nGn~li~~g~ 279 (299)
T PF14269_consen 221 NSDFNGTEPSRGLVLELD-------PETMTVTLVREYSDH---PDGFYSP-----------SQGSAQRLPNGNVLIGWGN 279 (299)
T ss_pred CCCCCCCcCCCceEEEEE-------CCCCEEEEEEEeecC---CCccccc-----------CCCcceECCCCCEEEecCC
Confidence 335666663 3322 2222211000 0000000 1112334568999999877
Q ss_pred C--eEEECCCCcEEE
Q psy4832 312 N--IRVVSPEGIIHT 324 (770)
Q Consensus 312 ~--Ir~id~~G~i~t 324 (770)
. +..++++|++.-
T Consensus 280 ~g~~~E~~~~G~vv~ 294 (299)
T PF14269_consen 280 NGRISEFTPDGEVVW 294 (299)
T ss_pred CceEEEECCCCCEEE
Confidence 6 888999997753
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=87.36 E-value=38 Score=34.93 Aligned_cols=189 Identities=15% Similarity=0.147 Sum_probs=100.8
Q ss_pred ceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEE-EECCCccccCCCCCCcCCCcccccccccCcceEEEcc
Q psy4832 223 YQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEV-AVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA 301 (770)
Q Consensus 223 ~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~-vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~ 301 (770)
....+++.+.+-.+|++-.....|...+.... ...-|++.. +-| .=..-.++++.+
T Consensus 17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-d~~~G~~~r~~~G----------------------HsH~v~dv~~s~ 73 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRDKTIIVWKLTSD-DIKYGVPVRRLTG----------------------HSHFVSDVVLSS 73 (315)
T ss_pred eEEEEEeecCCCceEEEcccceEEEEEEeccC-ccccCceeeeeec----------------------cceEecceEEcc
Confidence 34566776666677777666666655533211 011122211 111 112356888999
Q ss_pred CCcEEEEeCCC--eEEECCCC--cEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC--CEEE
Q psy4832 302 DKTMFIADGTN--IRVVSPEG--IIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD--RVIF 375 (770)
Q Consensus 302 ~G~lYvaD~~~--Ir~id~~G--~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~--~~I~ 375 (770)
+|+..++-+.. +|.-|..+ ....+.|... --.+++|++ ++.-.|+-+ ..|.
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~----------------------dVlsva~s~-dn~qivSGSrDkTik 130 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGESTRRFVGHTK----------------------DVLSVAFST-DNRQIVSGSRDKTIK 130 (315)
T ss_pred CCceEEeccccceEEEEEecCCcEEEEEEecCC----------------------ceEEEEecC-CCceeecCCCcceee
Confidence 99988876543 77777553 2333444432 135789998 777777652 4454
Q ss_pred EEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCC-CEEEEeCCCCceeeE
Q psy4832 376 KLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTG-DLYIADIDARKVNAL 454 (770)
Q Consensus 376 ~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G-~lyVaD~~~~ri~~i 454 (770)
..+.-|....-.+...+ -...+.+.|.|+. +.+|+.....+. +
T Consensus 131 lwnt~g~ck~t~~~~~~----------------------------------~~WVscvrfsP~~~~p~Ivs~s~Dkt--v 174 (315)
T KOG0279|consen 131 LWNTLGVCKYTIHEDSH----------------------------------REWVSCVRFSPNESNPIIVSASWDKT--V 174 (315)
T ss_pred eeeecccEEEEEecCCC----------------------------------cCcEEEEEEcCCCCCcEEEEccCCce--E
Confidence 44433332222211110 1346788899975 666666665543 4
Q ss_pred EEEcCCCc-E-EEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCce
Q psy4832 455 RVIDSTGR-M-FDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLH 523 (770)
Q Consensus 455 ~~i~~~G~-i-~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~ 523 (770)
+.-+.++- + ..+.|. -...+.++|+|||.+..+-...+.
T Consensus 175 KvWnl~~~~l~~~~~gh------------------------------~~~v~t~~vSpDGslcasGgkdg~ 215 (315)
T KOG0279|consen 175 KVWNLRNCQLRTTFIGH------------------------------SGYVNTVTVSPDGSLCASGGKDGE 215 (315)
T ss_pred EEEccCCcchhhccccc------------------------------cccEEEEEECCCCCEEecCCCCce
Confidence 44343321 1 122221 123557999999999887544443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=86.92 E-value=57 Score=36.48 Aligned_cols=48 Identities=17% Similarity=0.063 Sum_probs=25.0
Q ss_pred eEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEE-EeC-CCcEEEEEe
Q psy4832 200 LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYI-SDA-EKHQILRVL 250 (770)
Q Consensus 200 ~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyv-sd~-~~~~I~~i~ 250 (770)
+|..++.+|.-...+.... ......+++|.+..|++ ++. .+.+|+.++
T Consensus 180 ~l~~~d~~g~~~~~l~~~~---~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~ 229 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSR---EPILSPRWSPDGKRIAYVSFEQKRPRIFVQN 229 (430)
T ss_pred EEEEECCCCCCceEEecCC---CceeeeeECCCCCEEEEEEcCCCCCEEEEEE
Confidence 4666677765333221111 12356688885556644 433 235687774
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=86.54 E-value=57 Score=36.07 Aligned_cols=58 Identities=24% Similarity=0.336 Sum_probs=35.0
Q ss_pred CCCEEEEeC-ceEEEEcC-CCcEEEEeccCcc-cc-c------ceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 190 DGSLYVGDF-NLVRRLTP-EGNVFTVLQLSAT-QV-S------YQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 190 dG~lyv~d~-~~I~~i~~-~G~v~~~~~~~~~-~~-~------~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
+|.||+.+. +.|..++. +|++.-....... .+ . .-.+++++ ++.||+.+. ++.++.++
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~v~v~~~-~g~l~ald 136 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA--GGKVYIGSE-KGQVYALN 136 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE--CCEEEEEcC-CCEEEEEE
Confidence 678888876 47888885 5887654432210 00 0 01235555 688998764 45777775
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=85.89 E-value=95 Score=38.02 Aligned_cols=67 Identities=12% Similarity=-0.001 Sum_probs=37.3
Q ss_pred ceEEEEcCCCCEEEEeC--ceEEEEcCCC-----cEE--EEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGPDGSLYVGDF--NLVRRLTPEG-----NVF--TVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~--~~I~~i~~~G-----~v~--~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
-.+++++++|+++++-. ..|+.++.+. ... .+... ..-.....+++++..+.+.++-..++.|+.++
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 46789999999776433 4677665432 110 00000 01123457788765566666665667776664
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=85.67 E-value=1.9 Score=36.47 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=29.2
Q ss_pred cccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 218 ATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 218 ~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
+..+..|+||+++|....|||++...+.|..++
T Consensus 50 a~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~ 82 (86)
T PF01731_consen 50 ASGFSFANGIAISPDKKYLYVASSLAHSIHVYK 82 (86)
T ss_pred eccCCCCceEEEcCCCCEEEEEeccCCeEEEEE
Confidence 457889999999998899999999999998774
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=85.47 E-value=20 Score=39.60 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=36.0
Q ss_pred CcceEEEccCC-cEEEEeCCC--eEEEC-CCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEE
Q psy4832 293 HPKGLAIKADK-TMFIADGTN--IRVVS-PEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHF 368 (770)
Q Consensus 293 ~P~gIavd~~G-~lYvaD~~~--Ir~id-~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv 368 (770)
-|..+.+.|++ ++|++-..+ |+..| ..|.|..-.. ..|..-..|.|-+ +|.=||
T Consensus 301 ~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd---------------------~hLg~i~~i~F~~-~g~rFi 358 (503)
T KOG0282|consen 301 VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD---------------------RHLGAILDITFVD-EGRRFI 358 (503)
T ss_pred CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH---------------------hhhhheeeeEEcc-CCceEe
Confidence 36677888877 799887655 88877 4565433222 2344556777776 777666
Q ss_pred Ee
Q psy4832 369 ID 370 (770)
Q Consensus 369 ~D 370 (770)
+.
T Consensus 359 ss 360 (503)
T KOG0282|consen 359 SS 360 (503)
T ss_pred ee
Confidence 54
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=85.33 E-value=1.5 Score=37.13 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=23.5
Q ss_pred ccCCeeEEEEcCCCC-EEEEeCCCCceee
Q psy4832 426 DLGSLTALAFSPTGD-LYIADIDARKVNA 453 (770)
Q Consensus 426 ~l~~P~giavd~~G~-lyVaD~~~~ri~~ 453 (770)
.|..|+||+++|+++ ||||+...+.|+.
T Consensus 52 g~~~aNGI~~s~~~k~lyVa~~~~~~I~v 80 (86)
T PF01731_consen 52 GFSFANGIAISPDKKYLYVASSLAHSIHV 80 (86)
T ss_pred cCCCCceEEEcCCCCEEEEEeccCCeEEE
Confidence 467899999999866 9999999887643
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=84.22 E-value=69 Score=34.98 Aligned_cols=138 Identities=15% Similarity=0.231 Sum_probs=80.5
Q ss_pred cceEEEccCCcEEEEeCCC----eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEE
Q psy4832 294 PKGLAIKADKTMFIADGTN----IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFI 369 (770)
Q Consensus 294 P~gIavd~~G~lYvaD~~~----Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~ 369 (770)
-.+|++.++|.|..+-+-. |+-+-.-..|-.+.|. +....+++++| +|....+
T Consensus 306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH----------------------~k~I~~V~fsP-NGy~lAT 362 (459)
T KOG0272|consen 306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGH----------------------IKEILSVAFSP-NGYHLAT 362 (459)
T ss_pred cceeEecCCCceeeccCccchhheeecccCcEEEEeccc----------------------ccceeeEeECC-CceEEee
Confidence 4589999999987764432 3333233356666653 33456899999 9988777
Q ss_pred eC----CEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcC-CCCEEEE
Q psy4832 370 DD----RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSP-TGDLYIA 444 (770)
Q Consensus 370 D~----~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~-~G~lyVa 444 (770)
-+ -+|+.+...-.+.++.+.. +-.+.|.++| .|...++
T Consensus 363 gs~Dnt~kVWDLR~r~~ly~ipAH~-------------------------------------nlVS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 363 GSSDNTCKVWDLRMRSELYTIPAHS-------------------------------------NLVSQVKYSPQEGYFLVT 405 (459)
T ss_pred cCCCCcEEEeeecccccceeccccc-------------------------------------chhhheEecccCCeEEEE
Confidence 52 3455554333333443211 2246788887 6777777
Q ss_pred eCCCCceeeEEEEcCCC--cEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCc
Q psy4832 445 DIDARKVNALRVIDSTG--RMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSL 522 (770)
Q Consensus 445 D~~~~ri~~i~~i~~~G--~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~ 522 (770)
-...+. ++..++.+ -+..++|-. ....++.+++||..+++-....
T Consensus 406 asyD~t---~kiWs~~~~~~~ksLaGHe------------------------------~kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 406 ASYDNT---VKIWSTRTWSPLKSLAGHE------------------------------GKVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred cccCcc---eeeecCCCcccchhhcCCc------------------------------cceEEEEeccCCceEEEeccCc
Confidence 766654 34333322 233444433 2356788888988777655544
Q ss_pred eE
Q psy4832 523 HI 524 (770)
Q Consensus 523 ~I 524 (770)
.|
T Consensus 453 T~ 454 (459)
T KOG0272|consen 453 TI 454 (459)
T ss_pred ee
Confidence 33
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=84.03 E-value=52 Score=38.71 Aligned_cols=71 Identities=24% Similarity=0.272 Sum_probs=45.9
Q ss_pred cCcceEEEeCCCCeEEEEe--CCEEEEEc-CCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccC
Q psy4832 352 QWPTGLALSPLDDSLHFID--DRVIFKLT-NDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLG 428 (770)
Q Consensus 352 ~~P~gla~d~~~g~lyv~D--~~~I~~i~-~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 428 (770)
.+-+.|+|+|.|++.|++- .++|+..+ ++-+|.... .+ =.
T Consensus 410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~----Dl---------------------------------~~ 452 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN----DL---------------------------------RD 452 (712)
T ss_pred CeeEEEEecccCCCcEeecccccceEEeecCcCeeEeeh----hh---------------------------------hh
Confidence 3568999999888888887 46666555 444432221 01 02
Q ss_pred CeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCc
Q psy4832 429 SLTALAFSPTGDLYIADIDARKVNALRVIDSTGR 462 (770)
Q Consensus 429 ~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~ 462 (770)
..+++++.|+|...|.-+.++. .+.++..|.
T Consensus 453 lITAvcy~PdGk~avIGt~~G~---C~fY~t~~l 483 (712)
T KOG0283|consen 453 LITAVCYSPDGKGAVIGTFNGY---CRFYDTEGL 483 (712)
T ss_pred hheeEEeccCCceEEEEEeccE---EEEEEccCC
Confidence 3588999999987777776663 455655553
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=83.69 E-value=65 Score=34.27 Aligned_cols=131 Identities=15% Similarity=0.245 Sum_probs=78.0
Q ss_pred ccCcceEEEccCCcEEEEeCCC--eEEEC-CCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEe----CCC
Q psy4832 291 LSHPKGLAIKADKTMFIADGTN--IRVVS-PEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS----PLD 363 (770)
Q Consensus 291 l~~P~gIavd~~G~lYvaD~~~--Ir~id-~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d----~~~ 363 (770)
..+.++|..+++|++.|+-... |.+|+ .+|.|.-.+|.... +.|. + ....|.+-.+..+- . +
T Consensus 143 ~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~-~df~-------~--~~~~f~~QHdar~~~~~~~-~ 211 (299)
T PF14269_consen 143 YFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRN-SDFT-------L--PATNFSWQHDARFLNESND-D 211 (299)
T ss_pred ccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCC-Cccc-------c--cCCcEeeccCCEEeccCCC-C
Confidence 4467889999999988776544 99999 67888766643311 1111 1 23345555555554 4 6
Q ss_pred CeEEEEeC------------CEEEEEcCCCc-EEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCe
Q psy4832 364 DSLHFIDD------------RVIFKLTNDLK-VKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSL 430 (770)
Q Consensus 364 g~lyv~D~------------~~I~~i~~~G~-v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P 430 (770)
+.|-+-|| ++|+.+++..+ ++.+.....+.... . -...
T Consensus 212 ~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~---------------------------~--s~~~ 262 (299)
T PF14269_consen 212 GTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGF---------------------------Y--SPSQ 262 (299)
T ss_pred CEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcc---------------------------c--ccCC
Confidence 77777775 36788886543 33222111000000 0 0011
Q ss_pred eEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEE
Q psy4832 431 TALAFSPTGDLYIADIDARKVNALRVIDSTGRMF 464 (770)
Q Consensus 431 ~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~ 464 (770)
-.+..-|+|+++|.+....+ +..++++|++.
T Consensus 263 G~~Q~L~nGn~li~~g~~g~---~~E~~~~G~vv 293 (299)
T PF14269_consen 263 GSAQRLPNGNVLIGWGNNGR---ISEFTPDGEVV 293 (299)
T ss_pred CcceECCCCCEEEecCCCce---EEEECCCCCEE
Confidence 22334578999999999875 78899999864
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=83.67 E-value=19 Score=38.35 Aligned_cols=68 Identities=21% Similarity=0.397 Sum_probs=44.1
Q ss_pred eeEEEEcCCCCEEEEeCCCCceeeEEEEcCC-CcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEE
Q psy4832 430 LTALAFSPTGDLYIADIDARKVNALRVIDST-GRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSV 508 (770)
Q Consensus 430 P~giavd~~G~lyVaD~~~~ri~~i~~i~~~-G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav 508 (770)
...++++|.|.=||+-+.... ||.+..+ |.-..+. -..++++..++..
T Consensus 275 V~dVdfsptG~EfvsgsyDks---IRIf~~~~~~SRdiY----------------------------htkRMq~V~~Vk~ 323 (433)
T KOG0268|consen 275 VMDVDFSPTGQEFVSGSYDKS---IRIFPVNHGHSRDIY----------------------------HTKRMQHVFCVKY 323 (433)
T ss_pred EEEeccCCCcchhccccccce---EEEeecCCCcchhhh----------------------------hHhhhheeeEEEE
Confidence 577899999999998887764 4444322 1111110 1234677888999
Q ss_pred cCCCcEEEE--cCCCceEEeee
Q psy4832 509 SPDGVVNVA--DQGSLHILALQ 528 (770)
Q Consensus 509 ~~dG~lyva--D~~~~~I~~i~ 528 (770)
+.|....++ |.+|.|+|+..
T Consensus 324 S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 324 SMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred eccccEEEecCCCcceeeeecc
Confidence 888776665 66777777653
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=83.41 E-value=69 Score=37.56 Aligned_cols=132 Identities=16% Similarity=0.265 Sum_probs=72.1
Q ss_pred ceEEEccCCcEEEEeCCC--eE--EECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe
Q psy4832 295 KGLAIKADKTMFIADGTN--IR--VVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID 370 (770)
Q Consensus 295 ~gIavd~~G~lYvaD~~~--Ir--~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D 370 (770)
.|..+.|+.+..++.+.. +| -++..-.+...-|... --..+.|.| -|.-|++-
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~----------------------PVwdV~F~P-~GyYFata 511 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLA----------------------PVWDVQFAP-RGYYFATA 511 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccceeEEEecCCCc----------------------ceeeEEecC-CceEEEec
Confidence 477888888888876653 44 4444444444333211 012455666 45444433
Q ss_pred C----CEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeC
Q psy4832 371 D----RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADI 446 (770)
Q Consensus 371 ~----~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~ 446 (770)
+ .++|..+..--.++++|. +.....+.|.|+.+...+.+
T Consensus 512 s~D~tArLWs~d~~~PlRifagh-------------------------------------lsDV~cv~FHPNs~Y~aTGS 554 (707)
T KOG0263|consen 512 SHDQTARLWSTDHNKPLRIFAGH-------------------------------------LSDVDCVSFHPNSNYVATGS 554 (707)
T ss_pred CCCceeeeeecccCCchhhhccc-------------------------------------ccccceEEECCcccccccCC
Confidence 2 355555554445555542 23346688988866555554
Q ss_pred CCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEE
Q psy4832 447 DARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVA 517 (770)
Q Consensus 447 ~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyva 517 (770)
..+. .|++-+.+...+..+.|-. ....+|+++|+|.-..+
T Consensus 555 sD~t-VRlWDv~~G~~VRiF~GH~------------------------------~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 555 SDRT-VRLWDVSTGNSVRIFTGHK------------------------------GPVTALAFSPCGRYLAS 594 (707)
T ss_pred CCce-EEEEEcCCCcEEEEecCCC------------------------------CceEEEEEcCCCceEee
Confidence 4443 3455554545555554421 12578999999865554
|
|
| >PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ] | Back alignment and domain information |
|---|
Probab=83.19 E-value=47 Score=32.31 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=14.0
Q ss_pred ecCceEEEEEecCCceEEEEEeCCCCEEEEEcCCCC
Q psy4832 634 LTNDLKIRALKKGRFDVTYDYDHLDRLSVRKDNYGN 669 (770)
Q Consensus 634 ~~~g~l~~~~~~~g~~~~y~YD~~grlv~~~d~~G~ 669 (770)
|.+|....+...+-++++| +.||+ ..+|..|+
T Consensus 142 yPDGTvk~vy~dG~qet~y---~~gr~-r~kd~~g~ 173 (179)
T PF07202_consen 142 YPDGTVKTVYPDGRQETRY---ASGRV-RIKDKDGN 173 (179)
T ss_pred cCCCCEEEEecCCCEEEEe---CCCcE-EEecCCCC
Confidence 4455444333322244443 25554 34565554
|
These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats []. |
| >PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller | Back alignment and domain information |
|---|
Probab=83.15 E-value=0.94 Score=31.79 Aligned_cols=19 Identities=16% Similarity=0.440 Sum_probs=16.5
Q ss_pred CcceEEEccCCcEEEEeCC
Q psy4832 293 HPKGLAIKADKTMFIADGT 311 (770)
Q Consensus 293 ~P~gIavd~~G~lYvaD~~ 311 (770)
.|.+|++|++|++||+-..
T Consensus 14 ~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eEEEEEECCCCCEEEEEee
Confidence 6899999999999998543
|
SBBP stands for Seven Bladed Beta Propeller. |
| >PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller | Back alignment and domain information |
|---|
Probab=82.76 E-value=1.3 Score=31.05 Aligned_cols=21 Identities=14% Similarity=0.377 Sum_probs=17.9
Q ss_pred CCeeEEEEcCCCCEEEEeCCC
Q psy4832 428 GSLTALAFSPTGDLYIADIDA 448 (770)
Q Consensus 428 ~~P~giavd~~G~lyVaD~~~ 448 (770)
..|.+|++|++|++||+-..+
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred eeEEEEEECCCCCEEEEEeec
Confidence 358999999999999997654
|
SBBP stands for Seven Bladed Beta Propeller. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=82.67 E-value=70 Score=33.91 Aligned_cols=167 Identities=14% Similarity=0.094 Sum_probs=85.9
Q ss_pred EEcCCCC-EEEEeC------ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEE-----EEEeccC
Q psy4832 186 TSGPDGS-LYVGDF------NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQI-----LRVLSLE 253 (770)
Q Consensus 186 a~~~dG~-lyv~d~------~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I-----~~i~~~~ 253 (770)
++.+||. ||.++. +.|-+.+.......+-+. .+.-..|..|.+.|....|.|++-+-..- .|++..
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~- 134 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD- 134 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh-
Confidence 4668887 455543 378888877555555433 22334699999998444899987542110 122111
Q ss_pred CccCCCCcEEEE-ECCCccccCCCCCCcCCCcccc--cccccCcceEEEccCCcEEEEeCCC---------eEEECCCCc
Q psy4832 254 SVADPSINWEVA-VGSGERCIPGDETNCGDNGPAL--AAKLSHPKGLAIKADKTMFIADGTN---------IRVVSPEGI 321 (770)
Q Consensus 254 ~~~~~~g~~~~v-aG~g~~~~p~~~~~~g~~g~~~--~a~l~~P~gIavd~~G~lYvaD~~~---------Ir~id~~G~ 321 (770)
..+-++..+ +.+|.-- +.... .-...+-+-|+++.+|.++++.... +-....++.
T Consensus 135 ---tM~psL~~ld~~sG~ll----------~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~ 201 (305)
T PF07433_consen 135 ---TMQPSLVYLDARSGALL----------EQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA 201 (305)
T ss_pred ---hcCCceEEEecCCCcee----------eeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc
Confidence 122333333 2222210 00001 1122356789999999999885432 222333332
Q ss_pred EEEeecCCCCCCCcCCCccCCCcccccccc-cCcceEEEeCCCCeEE-EEe--CCEEEEEc-CCCcEE
Q psy4832 322 IHTLIGHHKHHNIWSPFNCHRSFPASTAQL-QWPTGLALSPLDDSLH-FID--DRVIFKLT-NDLKVK 384 (770)
Q Consensus 322 i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l-~~P~gla~d~~~g~ly-v~D--~~~I~~i~-~~G~v~ 384 (770)
+..+.... .....| ++--+||+++ ++.++ ++- .+++..++ .+|++.
T Consensus 202 ~~~~~~p~----------------~~~~~l~~Y~gSIa~~~-~g~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 202 LRLLPAPE----------------EQWRRLNGYIGSIAADR-DGRLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred ceeccCCh----------------HHHHhhCCceEEEEEeC-CCCEEEEECCCCCEEEEEECCCCCEe
Confidence 22211100 001123 3567899998 77655 444 47888885 556543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=81.70 E-value=95 Score=34.80 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=17.8
Q ss_pred eEEEeCCCCe-EEEEe----CCEEEEEcCC-CcEEEEe
Q psy4832 356 GLALSPLDDS-LHFID----DRVIFKLTND-LKVKIVA 387 (770)
Q Consensus 356 gla~d~~~g~-lyv~D----~~~I~~i~~~-G~v~~va 387 (770)
..+++| +|+ |+++. ...|+.++.+ |+...+.
T Consensus 200 ~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~ 236 (427)
T PRK02889 200 SPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVA 236 (427)
T ss_pred cceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEee
Confidence 457778 664 54443 2468888854 5544443
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=80.77 E-value=1e+02 Score=34.59 Aligned_cols=51 Identities=25% Similarity=0.109 Sum_probs=28.5
Q ss_pred EEcCCCC----EEEEeC---ceEEEEcCCCc-EEEEeccCcccccceeEEEEeCCCCcEEEEe
Q psy4832 186 TSGPDGS----LYVGDF---NLVRRLTPEGN-VFTVLQLSATQVSYQYYLALSPADGHLYISD 240 (770)
Q Consensus 186 a~~~dG~----lyv~d~---~~I~~i~~~G~-v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd 240 (770)
++.|||. +|++.. ..|..++.+|. ...+.... ......+++|.+..|.++-
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~----g~~~~p~wSPDG~~Laf~s 249 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ----GNQLMPTFSPRKKLLAFIS 249 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC----CCccceEECCCCCEEEEEE
Confidence 6788875 345554 26888887643 33332211 1234568888554666554
|
|
| >PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A | Back alignment and domain information |
|---|
Probab=80.46 E-value=5.9 Score=33.04 Aligned_cols=53 Identities=26% Similarity=0.319 Sum_probs=34.6
Q ss_pred ceEEEEeecCCCCCCCccEEEEEEE-EceeEE-EEEeeCCCCceEEEEEecccccCceee
Q psy4832 22 LSSILIHLTHNEIPASLVKVHVRVE-IEGSVH-TKTYEADPNLTHVFTWNKRNVYKQKVY 79 (770)
Q Consensus 22 ~~~~~~~~~~~~~p~~l~~v~~~~~-v~g~~~-~~~~~~~p~~~~~~~W~~~d~y~~~v~ 79 (770)
+..+.+.| |..-..|.|.|. -.|++- +..+.+.+.-.+.|.||++|.-|+.+-
T Consensus 13 ~~~~~~~l-----~~~a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~WdG~d~~G~~~~ 67 (81)
T PF13860_consen 13 KGSIEYTL-----PEDADNVTVTIYDSNGQVVRTISLGSQSAGEHSFTWDGKDDDGNPVP 67 (81)
T ss_dssp EEEEEEEE-----CSSCEEEEEEEEETTS-EEEEEEEEECSSEEEEEEE-SB-TTS-B--
T ss_pred EEEEEEeC-----CCcccEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCCCCCcCCCC
Confidence 34555555 677778888885 457774 445678888899999999999998754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 770 | |||
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 8e-22 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 1e-11 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 1e-05 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 1e-20 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 6e-14 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 3e-13 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 7e-16 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 9e-16 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 3e-07 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 7e-07 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 2e-15 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 9e-10 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 5e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-15 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 3e-12 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 8e-10 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 1e-07 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 4e-07 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 7e-04 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 4e-05 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 4e-05 |
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430 | Back alignment and structure |
|---|
Score = 97.9 bits (243), Expect = 8e-22
Identities = 34/193 (17%), Positives = 65/193 (33%), Gaps = 12/193 (6%)
Query: 184 ALTSGPDGSLYVGDFN--LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDA 241
A T +G LY +N V R T L + +++++ P+ + YI
Sbjct: 231 AETHPINGELYFNSWNAGQVFRYDFTTQETTPL-FTIQDSGWEFHIQFHPSGNYAYIVVV 289
Query: 242 EKHQILRVLSLESVADPSINWEVAVGSGER-CIPGDETNCGDNGPALAAKLSHPKGLAIK 300
+H ILR + + V G + + G + P + +P
Sbjct: 290 NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSS 349
Query: 301 ADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRS-FPASTAQLQWPTGL 357
+ + D N IR+++P+G + T G + + + A+ P G+
Sbjct: 350 DEYDFYFCDRENHCIRILTPQGRVTTFAG-----RGSNGTSGYNDGDLRQEARFNHPEGI 404
Query: 358 ALSPLDDSLHFID 370
+ D
Sbjct: 405 VYDEERECFFIGD 417
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430 | Back alignment and structure |
|---|
Score = 66.7 bits (162), Expect = 1e-11
Identities = 46/406 (11%), Positives = 103/406 (25%), Gaps = 73/406 (17%)
Query: 123 DVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL-- 180
D+ EG ++ ++ V+ +GT DG D
Sbjct: 79 DIKLSILNDEGEEIANTEANEKFVYQKKMLVTTFLGTMYDGNTKYDLKDGPFDDCGGFGG 138
Query: 181 -TPVALTSGPDGSLYVGDFN-LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYI 238
++ LY+ R + E + + + +S + + + I
Sbjct: 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTV---YSGLSKVRTICWTHEADSMII 195
Query: 239 SDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLA 298
++ + + + + G K + G
Sbjct: 196 TNDQNNNDRPNNYILT-----------------------RESGFKVITELTKGQNCNGAE 232
Query: 299 I-KADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGL 357
+ ++ +V + + + W +
Sbjct: 233 THPINGELYFNSWNAGQV-----------------FRYDFTTQETTPLFTIQDSGWEFHI 275
Query: 358 ALSPLDDSLHFIDDR--VIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTV 415
P + + + I + D K K + + C G + +D+ D K +
Sbjct: 276 QFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVC--GQQGAKDWVDGVGKKAR--- 330
Query: 416 QDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKK 475
+ + S D Y D + + +R++ GR+ FAGR +
Sbjct: 331 --MHAPRQGTFVKNPAYKGSSDEYDFYFCDREN---HCIRILTPQGRVTTFAGRGSNGT- 384
Query: 476 NCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDG-VVNVADQG 520
+ L ARF + + + D+
Sbjct: 385 -----------SGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRE 419
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 46/375 (12%), Positives = 88/375 (23%), Gaps = 71/375 (18%)
Query: 261 NWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKAD--KTMFIADGTN-IRVVS 317
V G + + D L+ +++ + R++
Sbjct: 106 KMLVTTFLGTMYDGNTKYDLKDGPFDDCGGFGGAVWLSFDPKNHNHLYLVGEQHPTRLID 165
Query: 318 PE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFK 376
E + T+ A T + + + + FK
Sbjct: 166 FEKEYVSTVYS--------GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK 217
Query: 377 LTNDL-KVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAF 435
+ +L K + G H G+ + Q T Q+ + + D G + F
Sbjct: 218 VITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQF 277
Query: 436 SPTGD-LYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLL 494
P+G+ YI ++ + + D + K L
Sbjct: 278 HPSGNYAYIVVVNQ---HYILRSDY----------------------------DWKTKRL 306
Query: 495 TSTARFTSISALSVSPDGVVNVADQGSLHILALQHYLPTHDEHGEFKIPYPATNEIYVFN 554
T+ DGV A + + Y +
Sbjct: 307 TTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVK--------NPAYKGSSDEYDFYFCD 358
Query: 555 RYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTITDASGNKINFLRD--YSNVAQLQWPT 612
R I T G+++T N + D A+ P
Sbjct: 359 RENHCIR----------------ILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPE 402
Query: 613 GLALSPLDDSLHFID 627
G+ + D
Sbjct: 403 GIVYDEERECFFIGD 417
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409 | Back alignment and structure |
|---|
Score = 94.3 bits (234), Expect = 1e-20
Identities = 44/362 (12%), Positives = 87/362 (24%), Gaps = 74/362 (20%)
Query: 133 GILQKGDGSSLHLKHEF----PRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSG 188
I DG + F + VS + G+ + DG A+ + +
Sbjct: 84 RIKVIVDGKEVTTDGTFKYEQAQNVSTISGSASKDGND----DGDLASAKFKYMWGIAAV 139
Query: 189 PDGSLYVGDF--NLVRRLTPEGNVFTVLQLS--------ATQVSYQYYLALSPADGHLYI 238
+ ++ VR ++ + N T + Y + +Y+
Sbjct: 140 GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWE-GTHTVYV 198
Query: 239 SDAEKHQILRVLSLESVA----------DPSINWEVAVGSGERCIPGDETNC------GD 282
+ D + W V S + +
Sbjct: 199 YMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQL 258
Query: 283 NGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNC 340
P + D +++D + ++P+G G +
Sbjct: 259 ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCG-----SATQKT-- 311
Query: 341 HRSFPASTAQLQWPTGLALSPLDDSLHFIDD---RVIFKL-TNDLKVKIVAGIPLHCRTG 396
+ A P G+ + D + + +D + KL D V VAG
Sbjct: 312 VQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQI 370
Query: 397 DKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRV 456
D + + G +IA+ A+R
Sbjct: 371 DGT----------------------PLEATFNYPYDICYDGEGGYWIAE---AWGKAIRK 405
Query: 457 ID 458
Sbjct: 406 YA 407
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409 | Back alignment and structure |
|---|
Score = 73.5 bits (180), Expect = 6e-14
Identities = 30/250 (12%), Positives = 74/250 (29%), Gaps = 21/250 (8%)
Query: 278 TNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIW 335
+ D+G +AK + G+A + T+ + +R++S + T +
Sbjct: 117 KDGNDDGDLASAKFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKP 176
Query: 336 SPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRT 395
+ + S T ++ + + +
Sbjct: 177 A-VTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF 235
Query: 396 GDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALR 455
D +K + + + ++ + S + + + Y++D + +++
Sbjct: 236 VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL---SSVY 292
Query: 456 VIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVN 515
I G F G +K ++ L A F + ++V DG
Sbjct: 293 KITPDGECEWFCGSAT--------------QKTVQDGLREE-ALFAQPNGMTVDEDGNFY 337
Query: 516 VADQGSLHIL 525
+ D + L
Sbjct: 338 IVDGFKGYCL 347
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 3e-13
Identities = 28/164 (17%), Positives = 49/164 (29%), Gaps = 28/164 (17%)
Query: 171 DGVARDARLLTPVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVL-----------QLS 217
+ P + D + Y+ D + V ++TP+G
Sbjct: 259 ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLRE 318
Query: 218 ATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDE 277
+ + + DG+ YI D K LR L + G + D
Sbjct: 319 EALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDI-----LDGYVSTVAGQVDVASQID- 371
Query: 278 TNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPE 319
G L A ++P + + +IA+ IR + E
Sbjct: 372 ------GTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496 | Back alignment and structure |
|---|
Score = 80.4 bits (197), Expect = 7e-16
Identities = 38/253 (15%), Positives = 77/253 (30%), Gaps = 44/253 (17%)
Query: 171 DGVARDARLLTPVALTSGP-DGSLYVGDF--NLVRRLTPEGNVFTVL------------- 214
+ A T P +G LY + V RL T+
Sbjct: 238 SDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297
Query: 215 -----QLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSG 269
+ S+++ + + P + Y H +R E + + G
Sbjct: 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYK 357
Query: 270 ERCIPGDETNCGDNGPALAAKLSHP--------KGLAIKADKTMFIADGTN--IRVVSPE 319
+ G + A++++P + + + D N +R V+PE
Sbjct: 358 Q---SGY-----RDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE 409
Query: 320 GIIHTLIGH--HKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIF 375
GI+ T G + + A+ + +GL + + + D I
Sbjct: 410 GIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIR 469
Query: 376 KLTNDLKVKIVAG 388
++ + + + VAG
Sbjct: 470 TISME-QEENVAG 481
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 9e-16
Identities = 35/371 (9%), Positives = 92/371 (24%), Gaps = 125/371 (33%)
Query: 182 PVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYIS 239
P +T G +++ N++ + +G + T + L +S DG ++ +
Sbjct: 17 PYGITVSDKGKVWITQHKANMISCINLDGKITEYP--LPTPDAKVMCLTISS-DGEVWFT 73
Query: 240 DAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI 299
+ ++I R+ + S P G+
Sbjct: 74 ENAANKIGRI-------TKKGIIKEYTLPNP--------------------DSAPYGITE 106
Query: 300 KADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGL 357
+ ++ + I ++ +G I + +P+ +
Sbjct: 107 GPNGDIWFTEMNGNRIGRITDDGKIREY--------------------ELPNKGSYPSFI 146
Query: 358 ALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTV 415
L D++L F + + I ++T +
Sbjct: 147 TLGS-DNALWFTENQNNAIGRITESGDITEFKIPT------------------------- 180
Query: 416 QDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKK 475
+ L+ +I N + I ++G + +F
Sbjct: 181 ----------PASGPVGITKGNDDALWFVEIIG---NKIGRITTSGEITEFKI------- 220
Query: 476 NCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGS--LHILALQHYLPT 533
A++ + + G+ + L + +
Sbjct: 221 ---------------------PTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIEE 259
Query: 534 HDEHGEFKIPY 544
+ + P+
Sbjct: 260 YPIQIKSAEPH 270
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 19/141 (13%), Positives = 43/141 (30%), Gaps = 32/141 (22%)
Query: 182 PVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYIS 239
PV +T G D +L+ + N + R+T G + T + + + L+ +
Sbjct: 185 PVGITKGNDDALWFVEIIGNKIGRITTSGEITEF--KIPTPNARPHAITAGA-GIDLWFT 241
Query: 240 DAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI 299
+ ++I R+ + E + + P G+
Sbjct: 242 EWGANKIGRL-------TSNNIIEEYPIQIK--------------------SAEPHGICF 274
Query: 300 KADKTMFIADGTNIRVVSPEG 320
+ F + I ++
Sbjct: 275 DGETIWFAMECDKIGKLTLIK 295
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 7e-07
Identities = 26/262 (9%), Positives = 60/262 (22%), Gaps = 85/262 (32%)
Query: 286 ALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRS 343
L + + P G+ + ++I I ++ +G I
Sbjct: 9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEY------------------ 50
Query: 344 FPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKR 401
L +S D + F + I ++T +K
Sbjct: 51 --PLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITKKGIIKEYTL------------- 94
Query: 402 DFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTG 461
+ + P GD++ +++ N + I G
Sbjct: 95 ----------------------PNPDSAPYGITEGPNGDIWFTEMNG---NRIGRITDDG 129
Query: 462 RM----------------FDFAGR-WQSDKKNCNTTNC-AEFEKNSKETLLTSTARFTSI 503
++ W ++ N N ++ T +
Sbjct: 130 KIREYELPNKGSYPSFITLGSDNALWFTE----NQNNAIGRITESGDITEFKIPTPASGP 185
Query: 504 SALSVSPDGVVNVADQGSLHIL 525
++ D + + I
Sbjct: 186 VGITKGNDDALWFVEIIGNKIG 207
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 41/364 (11%), Positives = 92/364 (25%), Gaps = 115/364 (31%)
Query: 182 PVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYIS 239
P +TS DG ++ N + L G + T + L +S G ++ +
Sbjct: 22 PYGITSSEDGKVWFTQHKANKISSLDQSGRIKEF--EVPTPDAKVMCLIVSS-LGDIWFT 78
Query: 240 DAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI 299
+ ++I ++ + L S P G+
Sbjct: 79 ENGANKIGKL-------SKKGGFTEY--------------------PLPQPDSGPYGITE 111
Query: 300 KADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGL 357
+ ++ I ++ +G I+ + +P +
Sbjct: 112 GLNGDIWFTQLNGDRIGKLTADGTIYEY--------------------DLPNKGSYPAFI 151
Query: 358 ALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTV 415
L D++L F + + I ++TN K++
Sbjct: 152 TLGS-DNALWFTENQNNSIGRITNTGKLEEYPLPT------------------------- 185
Query: 416 QDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRM------------ 463
+ + + G L+ +I N + I +TG +
Sbjct: 186 ----------NAAAPVGITSGNDGALWFVEIMG---NKIGRITTTGEISEYDIPTPNARP 232
Query: 464 ----FDFAGR-WQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVAD 518
W ++ ++ ++ DG V A
Sbjct: 233 HAITAGKNSEIWFTEWGANQIG---RITNDNTIQEYQLQTENAEPHGITFGKDGSVWFAL 289
Query: 519 QGSL 522
+ +
Sbjct: 290 KCKI 293
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 9e-10
Identities = 26/212 (12%), Positives = 56/212 (26%), Gaps = 55/212 (25%)
Query: 173 VARDARLLTPVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALS 230
+ P +T G D +L+ + N + R+T G + T + +
Sbjct: 139 YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEY--PLPTNAAAPVGITSG 196
Query: 231 PADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAK 290
DG L+ + ++I R+ + +
Sbjct: 197 N-DGALWFVEIMGNKIGRI-------TTTGEISEY--------------------DIPTP 228
Query: 291 LSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPAST 348
+ P + + ++ + I ++ + I
Sbjct: 229 NARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQEY--------------------QLQ 268
Query: 349 AQLQWPTGLALSPLDDSLHFIDDRVIFKLTND 380
+ P G+ D S+ F I KL +
Sbjct: 269 TENAEPHGITFGK-DGSVWFALKCKIGKLNLN 299
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 39/378 (10%), Positives = 91/378 (24%), Gaps = 118/378 (31%)
Query: 286 ALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRS 343
L+ S P G+ D ++ I + G I
Sbjct: 14 NLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEF------------------ 55
Query: 344 FPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKR 401
L +S + F + I KL+
Sbjct: 56 --EVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKKGGFTEYPLPQ----------- 101
Query: 402 DFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTG 461
+ GD++ ++ + + + + G
Sbjct: 102 ------------------------PDSGPYGITEGLNGDIWFTQLNG---DRIGKLTADG 134
Query: 462 RMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGS 521
++++ + + + +++ D + + +
Sbjct: 135 TIYEYDL----------------------------PNKGSYPAFITLGSDNALWFTENQN 166
Query: 522 --LHILALQHYLPTHDEHGEFKIPY--------------PATNEIYVFNRYGQHITTRDM 565
+ + L + P N+I G+ I+ D+
Sbjct: 167 NSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGE-ISEYDI 225
Query: 566 TSGKPRYSFLYSKNTSFGKLSTITDASGNKI------NFLRDYSNVAQLQWPTGLALSPL 619
+ R + + ++ T+ N+I N +++Y + P G+
Sbjct: 226 PTPNARPHAITA--GKNSEI-WFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGK- 281
Query: 620 DDSLHFIDDRVIFKLTND 637
D S+ F I KL +
Sbjct: 282 DGSVWFALKCKIGKLNLN 299
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.6 bits (190), Expect = 8e-15
Identities = 105/699 (15%), Positives = 205/699 (29%), Gaps = 188/699 (26%)
Query: 125 HHHYNFHEGILQKGDGSSL-HLKHEFPRTVSVVMGTGLQRPLVCK-DCDGVARD------ 176
HHH +F G Q L + F + + ++ K + D +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 177 ARLLTPVALTSGPDG-SLYVG-----DFN-LVRRLTPEGNVFTVLQLSATQVSYQYYLAL 229
L L+ + +V ++ L+ + E Q S Y
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR-----QPSMMTRMYIEQRDR 118
Query: 230 SPADGHLY----ISDAEKHQILR--VLSLESVADPSINWEVAV----GSGERCIPGDETN 279
D ++ +S + + LR +L L P+ N V + GSG+
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLEL----RPAKN--VLIDGVLGSGKTW------- 165
Query: 280 CGDNGPALAAKLSHPKGLAIKADKTMF-IADGTNIRVVSPEGIIHTL--IGHHKHHNIWS 336
+A + + K D +F + SPE ++ L + + N S
Sbjct: 166 -------VALDVCLSYKVQCKMDFKIFWLNLK---NCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 337 PFNCHRSFPASTAQLQ-WPTGL-ALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCR 394
+ + +Q L P ++ L + + V + K L C+
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-V-----QN--AKAWNAFNLSCK 267
Query: 395 ----TGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFS-PTGDLYIADIDAR 449
T K DF T ++ S+ + ++ SL DL +
Sbjct: 268 ILLTTRFKQVTDFLSAA-TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---PREVL 323
Query: 450 KVNALRVIDSTGRMF-DFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSV 508
N + D W ++ + + L +T +S++ L
Sbjct: 324 TTNPR-RLSIIAESIRDGLATWD------------NWKHVNCDKL--TTIIESSLNVLE- 367
Query: 509 SPDGVVNVADQGSLHILALQHYLPTHDEHGEFKIPYPATNEIYVFNRYGQHITTRDMTSG 568
P E++ + + + VF HI T
Sbjct: 368 -PA---------------------------EYRKMF---DRLSVF-PPSAHIPTI----- 390
Query: 569 KPRYSFLYSKNTSFGKLSTITDASGNKINFLRDYSNVAQLQWPTGLALSPLDDSLHFIDD 628
S ++ I +N L YS V + P +S + I
Sbjct: 391 --LLSLIWFD--------VIKSDVMVVVNKLHKYSLVEK--QPKESTIS-----IPSIYL 433
Query: 629 RVIFKLTNDLKIRALKKGRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIY 688
+ KL N+ + +++ +D D + D Y FY++ + H+
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY------FYSHIGH-----HLK 482
Query: 689 SPRYGKLISL---VYDERGFL-------------------IFAQMFRHKYYIATDQCGTP 726
+ + + ++L V+ + FL Q+ +K YI D
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI-CDNDPKY 541
Query: 727 VMVFNQYGETVRE----IMRSPYGHIV----YDSNPYIY 757
+ N + + + ++ S Y ++ + I+
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 3e-12
Identities = 40/298 (13%), Positives = 84/298 (28%), Gaps = 98/298 (32%)
Query: 172 GVARDARLLTPVALTSGPDGSLYVGDFN--LVRRLTPEGNVFTVLQLSATQVSYQYYLAL 229
V L P L G++YV DFN +V N + ++Y LA+
Sbjct: 59 TVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL---PFDGLNYPEGLAV 115
Query: 230 SPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAA 289
G +Y++D ++++++ + +
Sbjct: 116 DT-QGAVYVADRGNNRVVKL-------AAGSKTQTVLPFT-------------------- 147
Query: 290 KLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPAS 347
L+ P G+A+ +++ D N + + E ++
Sbjct: 148 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP-------------------- 187
Query: 348 TAQLQWPTGLALSPLDDSLHFID---DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFK 404
+ P G+A+ +++ + ++V+ KL V
Sbjct: 188 FTDITAPWGIAVDE-AGTVYVTEHNTNQVV-KLLAGSTTSTVLP---------------- 229
Query: 405 DKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGR 462
L + A+A +Y+AD +V + S
Sbjct: 230 -------------------FTGLNTPLAVAVDSDRTVYVADRGNDRV---VKLTSLEH 265
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 8e-10
Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 41/158 (25%)
Query: 179 LLTPVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHL 236
L P + G++YV D N V +L E N VL T ++ + +A+ G +
Sbjct: 149 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--PFTDITAPWGIAVDE-AGTV 205
Query: 237 YISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKG 296
Y+++ +Q++++ + L+ P
Sbjct: 206 YVTEHNTNQVVKL-------LAGSTTSTVLPFT--------------------GLNTPLA 238
Query: 297 LAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHH 332
+A+ +D+T+++AD N + ++ HH HH
Sbjct: 239 VAVDSDRTVYVADRGNDRVVKLTSL-------EHHHHH 269
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 56/382 (14%), Positives = 101/382 (26%), Gaps = 113/382 (29%)
Query: 169 DCDGVARDARLLTPVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYY 226
+ D + +L + ++ + + F Q +
Sbjct: 13 ELDWPGVYLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSK-FVYQQRGLGPIEEDTI 71
Query: 227 LALSP-----------------------ADGHLYISDAEKHQILRVLSLESVADPSINWE 263
L + P DG+ +++D HQ+ ++ DP
Sbjct: 72 LVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKL-------DPHSKEG 124
Query: 264 VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI-KADKTMFIADGTN---IRVVSPE 319
+ G PG + N P +A+ + +F++DG I SP
Sbjct: 125 PLLILGRSMQPGSDQN----------HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS 174
Query: 320 GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFKLTN 379
G T G + P Q P LAL P D L + DR N
Sbjct: 175 GKFVTQWGEESSGSSPRP-----------GQFSVPHSLALVPHLDQL-CVADR-----EN 217
Query: 380 DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTG 439
+++ +K ++ S + + + F+ G
Sbjct: 218 G-RIQCF------------------KTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNG 258
Query: 440 DLYIADIDARKVNALRVID-STGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTA 498
Y D + + V++ S+G + D
Sbjct: 259 KPYFGDQEPVQG---FVMNFSSGEIIDVFK--------------------------PVRK 289
Query: 499 RFTSISALSVSPDGVVNVADQG 520
F + S DG V + D
Sbjct: 290 HFDMPHDIVASEDGTVYIGDAH 311
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 4e-07
Identities = 45/302 (14%), Positives = 81/302 (26%), Gaps = 78/302 (25%)
Query: 176 DARLLTPVALTSGPDGSLYVGDFNL--VRRLTPEGNVFTVLQLSATQVSYQ--------Y 225
P L+ DG+ +V D L V +L P +L L +
Sbjct: 87 KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT 146
Query: 226 YLALSPADGHLYISDAEK-HQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNG 284
+A+ P+ G +++SD +I++ PS + G
Sbjct: 147 DVAVEPSTGAVFVSDGYCNSRIVQF-------SPSGKFVTQWGEE-----------SSGS 188
Query: 285 PALAAKLSHPKGLAIKADK-TMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCH 341
+ S P LA+ + +AD N I+ + + H
Sbjct: 189 SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT------------KEFVREIKH 236
Query: 342 RSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKR 401
SF + + + G + + +F D +
Sbjct: 237 ASFGRNVFAISYIPGFLFAV-NGKPYFGDQE------PVQGFVM---------------- 273
Query: 402 DFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTG 461
+F + V+ + S G +YI D V T
Sbjct: 274 NFSSGEIIDVFKPVRK--------HFDMPHDIVASEDGTVYIGDAHTNTV---WKFTLTE 322
Query: 462 RM 463
+M
Sbjct: 323 KM 324
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 7e-04
Identities = 31/207 (14%), Positives = 59/207 (28%), Gaps = 49/207 (23%)
Query: 190 DGSLYVGDF---NLVRRLTPEGNVFTV-------LQLSATQVSYQYYLALSPADGHLYIS 239
G+++V D + + + +P G T Q S + LAL P L ++
Sbjct: 154 TGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVA 213
Query: 240 DAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI 299
D E +I + ++ R I +S+ G
Sbjct: 214 DRENGRI-QCFKTDT------------KEFVREIKHASFGRNVFA------ISYIPGFLF 254
Query: 300 KADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLAL 359
+ + D ++ +I F P +
Sbjct: 255 AVNGKPYFGDQEPVQGFVMNFSSGEIID---------------VFKPVRKHFDMPHDIVA 299
Query: 360 SPLDDSLHFID---DRV-IFKLTNDLK 382
S D +++ D + V F LT ++
Sbjct: 300 SE-DGTVYIGDAHTNTVWKFTLTEKME 325
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 4e-05
Identities = 21/179 (11%), Positives = 49/179 (27%), Gaps = 36/179 (20%)
Query: 182 PVALTSGPDGSLYVGDFN-----LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHL 236
L +G L +N +V + +G V T+L L + + D
Sbjct: 74 VSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDA--IFLNGITPLS-DTQY 130
Query: 237 YISDAEKHQILR----------VLSLESVADPSINWEVAVGSGERCIPGD--ETNCGDN- 283
+D+ + I L +A + +G + +N
Sbjct: 131 LTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML 190
Query: 284 -------------GPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIG 327
P + + ++ A + ++ A + ++P+ +
Sbjct: 191 LLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQ 249
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 4e-05
Identities = 46/337 (13%), Positives = 97/337 (28%), Gaps = 82/337 (24%)
Query: 185 LTSGPDGSLYVGDFNL--VRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAE 242
L S PDG+++V + + + +TP+GN + LA + +G L +
Sbjct: 37 LASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSG----LAFTS-NGDLVATGWN 91
Query: 243 KHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKAD 302
I V ++ +D ++ + + G+ +D
Sbjct: 92 ADSIPVVSLVK--SDGTVETLLTLPDAIF----------------------LNGITPLSD 127
Query: 303 KTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPL 362
AD I + +IW L ++ P
Sbjct: 128 TQYLTADSYRGA-------IWLIDVVQPSGSIW----------LEHPMLARSNSESVFPA 170
Query: 363 DDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRA 422
+ L + + ++ + ++ IP+ + F
Sbjct: 171 ANGLKRFGNFLYV---SNTEKMLLLRIPVDSTDKPGEPEIF------------------- 208
Query: 423 SNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNC 482
++ ++ AF G+LY A N++ I A +++ +T
Sbjct: 209 --VEQTNIDDFAFDVEGNLYGATHIY---NSVVRIAPDRSTTIIAQ---AEQGVIGSTAV 260
Query: 483 AEF--EKNSKETL-LTSTARFTSISALSVSPDGVVNV 516
A F + + + + V P VV +
Sbjct: 261 A-FGQTEGDCTAIYVVTNGGMFLPPPTGVVPANVVRL 296
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 770 | |||
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.97 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.97 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.97 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.97 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.94 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.93 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.93 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.93 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.92 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.92 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.91 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.91 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.91 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.9 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.89 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.89 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.89 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.88 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.88 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.87 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.87 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.87 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.87 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.86 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.86 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.86 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.85 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.85 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.85 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.84 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.84 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.84 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.84 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.83 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.83 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.82 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.82 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.79 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.78 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.78 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.75 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.74 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.74 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.73 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.72 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.71 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.69 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.69 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.69 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.68 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.67 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.67 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.65 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.61 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.61 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.6 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.59 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.59 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.59 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.59 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.57 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.56 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.5 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.5 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.48 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.44 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.43 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.43 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.41 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.39 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.38 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.34 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.33 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.33 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.33 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.32 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.31 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.3 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.29 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.26 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.25 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 99.2 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.19 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.18 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.16 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.16 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.16 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.15 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.08 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.07 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.05 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.01 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.98 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.97 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 98.95 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.94 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.88 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 98.84 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.84 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.83 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.83 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.81 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 98.78 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.74 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.72 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.69 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.68 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.66 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.66 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.65 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.64 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 98.64 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.63 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.57 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.55 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.54 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.49 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.47 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.47 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 98.44 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.43 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.42 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.4 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.38 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.36 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.35 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.31 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.28 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.26 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.26 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.25 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.21 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.2 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.19 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.16 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.14 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.13 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.12 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.1 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.05 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.05 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.04 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.02 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 98.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 97.97 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.93 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 97.91 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.91 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 97.82 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.81 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 97.81 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.77 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 97.76 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 97.74 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 97.73 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 97.72 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 97.69 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.68 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.62 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.61 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.58 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 97.57 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.57 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 97.48 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 97.47 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.45 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 97.44 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 97.41 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 97.39 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 97.39 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 97.39 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 97.37 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 97.35 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.35 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.32 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 97.32 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.29 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.28 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 97.24 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.21 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 97.2 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.19 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.17 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 97.15 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 97.15 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 97.12 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 97.11 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 97.09 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 97.08 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 97.03 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.02 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 96.99 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.97 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 96.96 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 96.93 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 96.93 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 96.92 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 96.88 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 96.88 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 96.86 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 96.82 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 96.81 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 96.81 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 96.8 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 96.79 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 96.72 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 96.71 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 96.7 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 96.69 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 96.68 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 96.64 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 96.64 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 96.62 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 96.59 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 96.58 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 96.58 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.55 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 96.53 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 96.49 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 96.39 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 96.39 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 96.34 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 96.25 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 96.24 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 96.16 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 96.02 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 96.01 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 95.96 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 95.86 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 95.81 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 95.8 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 95.77 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 95.76 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 95.61 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 95.59 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 95.46 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 95.39 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 95.32 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 95.16 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 95.15 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 95.05 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 95.01 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 94.99 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 94.98 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 94.3 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 94.24 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 93.99 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 93.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 93.78 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 93.69 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 93.51 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 93.31 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 93.07 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 93.05 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 92.84 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 92.8 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 92.54 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 92.17 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 92.15 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 91.97 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 91.9 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 91.45 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 90.62 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 90.44 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 90.33 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 90.2 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 89.32 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 89.24 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 89.2 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 87.63 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 87.38 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 86.62 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 85.64 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 85.45 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 84.62 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 83.99 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 83.93 |
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-30 Score=285.71 Aligned_cols=286 Identities=15% Similarity=0.150 Sum_probs=215.9
Q ss_pred CCCeEEEEec-----cCccCCccCCCCCcccccc-cccCceEEEEcCC---CCEEEEeC-ceEEEEcC-CCcEEEEeccC
Q psy4832 149 FPRTVSVVMG-----TGLQRPLVCKDCDGVARDA-RLLTPVALTSGPD---GSLYVGDF-NLVRRLTP-EGNVFTVLQLS 217 (770)
Q Consensus 149 ~~~~i~~v~g-----~G~~~~~~~~~~~g~~~~~-~l~~P~~la~~~d---G~lyv~d~-~~I~~i~~-~G~v~~~~~~~ 217 (770)
.+..|++++| +|... .++|+...+ +|..|.+|++|++ |+|||+|. ++|+++++ +|.+.++++
T Consensus 107 ~~~~VsTv~G~~~~~~g~~~-----~~dG~~~~a~~~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-- 179 (433)
T 4hw6_A 107 YNYVVTTFLGKLYENNTKWD-----VLAGPFDDCGAFDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-- 179 (433)
T ss_dssp CCEEEEEEECCCBTTTTBCC-----CCCEETTSCCCCSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC--
T ss_pred eeeEEeeeecceeccCCCcc-----ccCCchHHhcccCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec--
Confidence 6789999999 67654 356766555 9999999999985 99999999 89999998 677777763
Q ss_pred cccccceeEEEEeCCCCcEEEEeCCCc----EEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccC
Q psy4832 218 ATQVSYQYYLALSPADGHLYISDAEKH----QILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSH 293 (770)
Q Consensus 218 ~~~~~~p~~lav~p~~g~lyvsd~~~~----~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~ 293 (770)
.+..|.+|++++ +|+|||+|..++ .+..+.. ++. +.. ....+.+..
T Consensus 180 --~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~-------~~~-----------------~~~---~~~~~~~~~ 229 (433)
T 4hw6_A 180 --NIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTR-------ASG-----------------FTE---RLSLCNARG 229 (433)
T ss_dssp --CCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECG-------GGT-----------------TCC---EEEEEECSS
T ss_pred --CCCCccEEEECC-CCCEEEEcCCCCcccceEEEEEC-------CCC-----------------eec---cccccccCC
Confidence 678899999997 677999998642 2444421 110 000 012235789
Q ss_pred cceEEEcc-CCcEEEEeCCC--eEEECCC-CcE-EEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EE
Q psy4832 294 PKGLAIKA-DKTMFIADGTN--IRVVSPE-GII-HTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LH 367 (770)
Q Consensus 294 P~gIavd~-~G~lYvaD~~~--Ir~id~~-G~i-~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-ly 367 (770)
|.+|++|+ +|+|||+|..+ |++++++ |.+ ..++..+. ..+|.+|+++| +|+ ||
T Consensus 230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~--------------------~~~~~~ia~dp-dG~~LY 288 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT--------------------KGSNFHIVWHP-TGDWAY 288 (433)
T ss_dssp BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC--------------------CSSCEEEEECT-TSSEEE
T ss_pred CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC--------------------CCCcccEEEeC-CCCEEE
Confidence 99999999 89999999876 9999987 877 44443221 23567899999 776 99
Q ss_pred EEe--CCEEEEEcCC---Cc---EEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEE----
Q psy4832 368 FID--DRVIFKLTND---LK---VKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAF---- 435 (770)
Q Consensus 368 v~D--~~~I~~i~~~---G~---v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giav---- 435 (770)
|+| +++|++++.+ +. ..+++|....... ....+..+.|..|.+|++
T Consensus 289 vad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~----------------------~dg~~~~a~~~~P~giav~~n~ 346 (433)
T 4hw6_A 289 IIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGW----------------------VDGMGTGARLWGPNQGIFVKNE 346 (433)
T ss_dssp EEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCC----------------------BCEEGGGSBCSSEEEEEEEECG
T ss_pred EEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCcc----------------------CCCcccceEEcCCccEEEEccc
Confidence 999 6899999865 32 3577775322111 012345678999999999
Q ss_pred -----cCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEc-
Q psy4832 436 -----SPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVS- 509 (770)
Q Consensus 436 -----d~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~- 509 (770)
+++|+|||||+.++| |++++++|.+++++|.+.. |.+ +..++.++..++|+.|.+||++
T Consensus 347 ~y~~dd~~g~lyvaD~~n~~---I~~~~~~G~v~t~~G~g~~----~~~--------G~~dG~~~~~~~~~~P~giavd~ 411 (433)
T 4hw6_A 347 AYAGEEDEYDFYFCDRDSHT---VRVLTPEGRVTTYAGRGNS----REW--------GYVDGELRSQALFNHPTSIAYDM 411 (433)
T ss_dssp GGTTSSCCEEEEEEETTTTE---EEEECTTSEEEEEECCCTT----CSS--------CCBCEETTTTCBCSSEEEEEEET
T ss_pred cccccCCCCcEEEEECCCCE---EEEECCCCCEEEEEeCCCC----Ccc--------ccCCCccccccEeCCCcEEEEEC
Confidence 899999999999986 7888999999999987630 000 0134446778899999999999
Q ss_pred CCCcEEEEcCCCceEEeeec
Q psy4832 510 PDGVVNVADQGSLHILALQH 529 (770)
Q Consensus 510 ~dG~lyvaD~~~~~I~~i~~ 529 (770)
++|.|||+|.+|+||++|..
T Consensus 412 ~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 412 KRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp TTTEEEEEEGGGTEEEEEEE
T ss_pred CCCEEEEEeCCCCEEEEEec
Confidence 79999999999999999865
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-29 Score=275.78 Aligned_cols=316 Identities=14% Similarity=0.105 Sum_probs=216.7
Q ss_pred CCCeEEEEecc----CccCCccCCCCCcccc------cccccCceEEEEcC--CCCEEEEeC--ceEEEEcCCC-cEEEE
Q psy4832 149 FPRTVSVVMGT----GLQRPLVCKDCDGVAR------DARLLTPVALTSGP--DGSLYVGDF--NLVRRLTPEG-NVFTV 213 (770)
Q Consensus 149 ~~~~i~~v~g~----G~~~~~~~~~~~g~~~------~~~l~~P~~la~~~--dG~lyv~d~--~~I~~i~~~G-~v~~~ 213 (770)
....|++++|. |... ..+|+.. .++|..|.+|++|| +++|||++. ++|++|++.+ .+.++
T Consensus 103 ~~~~VsTl~G~~~~~g~~~-----~~dG~~~~~~~~~~~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l 177 (496)
T 3kya_A 103 KKMVVGTLCGYRNNRDDQG-----WRDGPFDGPEGVKCCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSP 177 (496)
T ss_dssp CCEEEEEEEECCCTTSCCC-----CBCEESSSSTTTSCBCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEE
T ss_pred EEEEEEEeeeeEcCCCcee-----ccCCcccccccccccccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEE
Confidence 66799999994 3322 1234432 67789999999998 488999987 5999999765 66777
Q ss_pred eccCcccccceeEEEE-------eCCCCcEEEEeCCC------cEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCc
Q psy4832 214 LQLSATQVSYQYYLAL-------SPADGHLYISDAEK------HQILRVLSLESVADPSINWEVAVGSGERCIPGDETNC 280 (770)
Q Consensus 214 ~~~~~~~~~~p~~lav-------~p~~g~lyvsd~~~------~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~ 280 (770)
+..+...+..|.+|++ ++..+.|||+|..+ +.|.+++. +.+|.+. ..
T Consensus 178 ~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r-----~~~G~~~---------------~~ 237 (496)
T 3kya_A 178 LNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKR-----NADGTFD---------------DR 237 (496)
T ss_dssp ECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEEC-----CTTSCCS---------------TT
T ss_pred EccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEec-----CCCCcee---------------ec
Confidence 6654446788999999 97444599999986 34777642 1122210 00
Q ss_pred CCCcccccccccCcceEEEcc-CCcEEEEeCCC--eEEECCC--------CcEEEeecCCCCCCCcCCCccCC-Cccccc
Q psy4832 281 GDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVSPE--------GIIHTLIGHHKHHNIWSPFNCHR-SFPAST 348 (770)
Q Consensus 281 g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id~~--------G~i~t~~g~~~~~~~~~p~~~~~-~~~~~~ 348 (770)
.+. ..-+.+.+|.+|++++ ++.||++|..+ |++++++ |.+.+-.. |..++. ......
T Consensus 238 ~~~--~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~---------~~~~g~~~~l~~~ 306 (496)
T 3kya_A 238 SDI--QLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV---------KNNPNTFKQLFTI 306 (496)
T ss_dssp SCE--EEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG---------GGCTTTEEEEEEC
T ss_pred ccc--eeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc---------cccccccceeEec
Confidence 000 0112467899999999 78899999877 9999975 43310000 000000 000000
Q ss_pred ccccCcceEEEeCCCCe-EEEEe--CCEEEEEcCCCc---E---EEEecCCCCCCCCCCCCccccccccccccccccCCc
Q psy4832 349 AQLQWPTGLALSPLDDS-LHFID--DRVIFKLTNDLK---V---KIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDS 419 (770)
Q Consensus 349 ~~l~~P~gla~d~~~g~-lyv~D--~~~I~~i~~~G~---v---~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (770)
..-.+|.+|+++| +|+ |||+| +|+|+|++.++. + ++++|.+...... +
T Consensus 307 ~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~---------------------D- 363 (496)
T 3kya_A 307 ADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYR---------------------D- 363 (496)
T ss_dssp SSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCB---------------------C-
T ss_pred CCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCccc---------------------C-
Confidence 1124799999999 777 99999 699999987763 3 6788863322111 1
Q ss_pred ccccccccCCee-EEEEc-------CCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccC
Q psy4832 420 VRASNMDLGSLT-ALAFS-------PTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKE 491 (770)
Q Consensus 420 ~~a~~~~l~~P~-giavd-------~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d 491 (770)
..+..++|..|. +++++ ++|+|||||+.+|| ||+++++|.+++++|.+..+ .+. ..+..+..|
T Consensus 364 G~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~r---Ir~i~~~G~v~TiaG~g~~~----~~~--~~~~~G~~d 434 (496)
T 3kya_A 364 DVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFC---VRKVTPEGIVSTYAGRGAST----SLA--DGNQWGTDD 434 (496)
T ss_dssp CBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTE---EEEECTTCBEEEEEESCTTH----HHH--HSCSCCCCC
T ss_pred CcccccccCCCeEEEEEccccccccCCCeEEEEECCCCE---EEEEeCCCCEEEEecccccc----ccc--CccccccCC
Confidence 245678899999 88987 68999999999986 78899999999999986310 000 000001135
Q ss_pred cccccceecCCeeEEEEcCC-CcEEEEcCCCceEEeeecCCc
Q psy4832 492 TLLTSTARFTSISALSVSPD-GVVNVADQGSLHILALQHYLP 532 (770)
Q Consensus 492 ~~~~~~~~l~~P~giav~~d-G~lyvaD~~~~~I~~i~~~~~ 532 (770)
+.++..++|+.|.|||++++ |.|||+|.+|+|||+|.....
T Consensus 435 G~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 435 GDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred CCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 55788999999999999996 999999999999999987654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-28 Score=273.07 Aligned_cols=287 Identities=16% Similarity=0.153 Sum_probs=211.8
Q ss_pred CCCeEEEEec-----cCccCCccCCCCCccc-ccccccCceEEEEcC--CCCEEEEeC-ceEEEEcCCCc-EEEEeccCc
Q psy4832 149 FPRTVSVVMG-----TGLQRPLVCKDCDGVA-RDARLLTPVALTSGP--DGSLYVGDF-NLVRRLTPEGN-VFTVLQLSA 218 (770)
Q Consensus 149 ~~~~i~~v~g-----~G~~~~~~~~~~~g~~-~~~~l~~P~~la~~~--dG~lyv~d~-~~I~~i~~~G~-v~~~~~~~~ 218 (770)
.+..|++++| +|..+. ++|.. ..++|.+|.+|++|| +|+|||+|. ++|+++++++. +.+++.
T Consensus 105 ~~~~VsT~~G~~~~~~g~~g~-----~dG~~~~~~~~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--- 176 (430)
T 3tc9_A 105 KKMLVTTFLGTMYDGNTKYDL-----KDGPFDDCGGFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--- 176 (430)
T ss_dssp CCEEEEEEECCCBTTTTBCCB-----CCEEGGGCBCCSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC---
T ss_pred EEeEEEEeeeeEEccCCCccc-----cCCCHHHccCCCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec---
Confidence 6789999999 455442 45554 566899999999997 599999999 79999999875 445442
Q ss_pred ccccceeEEEEeCCCCcEEEEeCCCc----EEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCc
Q psy4832 219 TQVSYQYYLALSPADGHLYISDAEKH----QILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHP 294 (770)
Q Consensus 219 ~~~~~p~~lav~p~~g~lyvsd~~~~----~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P 294 (770)
.+..|.+|++++.++.|||+|..++ .+..+.. ++.+.. ......+..|
T Consensus 177 -~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-------~g~~~~--------------------~~~l~~~~~p 228 (430)
T 3tc9_A 177 -GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-------ESGFKV--------------------ITELTKGQNC 228 (430)
T ss_dssp -CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-------GGTSCS--------------------EEEEEECSSC
T ss_pred -CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-------CCceee--------------------eeeeccCCCc
Confidence 6788999999974444999998543 4555532 221110 0011246789
Q ss_pred ceEEEcc-CCcEEEEeCCC--eEEECCCCcEE-EeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEE
Q psy4832 295 KGLAIKA-DKTMFIADGTN--IRVVSPEGIIH-TLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFI 369 (770)
Q Consensus 295 ~gIavd~-~G~lYvaD~~~--Ir~id~~G~i~-t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~ 369 (770)
.+|++++ +|.|||+|..+ |+++++++... .+...+ ...+|.+|+++| +|+ |||+
T Consensus 229 ~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~--------------------~~~~P~gia~~p-dG~~lyv~ 287 (430)
T 3tc9_A 229 NGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ--------------------DSGWEFHIQFHP-SGNYAYIV 287 (430)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS--------------------SSSCCEEEEECT-TSSEEEEE
T ss_pred eEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC--------------------CCCcceeEEEcC-CCCEEEEE
Confidence 9999999 89999999776 99999886543 433221 124799999999 777 9999
Q ss_pred e--CCEEEEEcCCCc------EEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCee-EEEE-----
Q psy4832 370 D--DRVIFKLTNDLK------VKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLT-ALAF----- 435 (770)
Q Consensus 370 D--~~~I~~i~~~G~------v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~-giav----- 435 (770)
| +++|++++.++. +.+++|.+...... ...+..+.|..|. ++++
T Consensus 288 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~----------------------dg~~~~a~~~~P~~gv~v~~~~y 345 (430)
T 3tc9_A 288 VVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWV----------------------DGVGKKARMHAPRQGTFVKNPAY 345 (430)
T ss_dssp ETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCB----------------------CEEGGGCBBSSEEEEEEEECGGG
T ss_pred ECCCCEEEEEeCCcccccccceEEEeccCCCCCCC----------------------CCCCcceEeCCCcceEEEccccc
Confidence 9 689999997753 45677753221110 1233566799999 8999
Q ss_pred ---cCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcC-C
Q psy4832 436 ---SPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSP-D 511 (770)
Q Consensus 436 ---d~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~-d 511 (770)
|++|+|||||+.++| |++++++|++++++|.+..+.. +..++.++..++|+.|.+||+++ +
T Consensus 346 ~~~D~~g~lyvaD~~n~~---I~~i~~~G~v~~~~g~g~~~~~------------G~~dG~~~~~~~~~~P~giavd~~~ 410 (430)
T 3tc9_A 346 KGSSDEYDFYFCDRENHC---IRILTPQGRVTTFAGRGSNGTS------------GYNDGDLRQEARFNHPEGIVYDEER 410 (430)
T ss_dssp TTSSCCEEEEEEEGGGTE---EEEECTTSEEEEEEECCTTSSS------------SCBCEETTTTCBCSSEEEEEEETTT
T ss_pred cccCCCCeEEEEECCCcE---EEEECCCCcEEEEEeCCCCCCC------------cccCCCchhhcEeCCCcEEEEECCC
Confidence 467999999999986 7888999999999987532210 01244467788999999999999 6
Q ss_pred CcEEEEcCCCceEEeeec
Q psy4832 512 GVVNVADQGSLHILALQH 529 (770)
Q Consensus 512 G~lyvaD~~~~~I~~i~~ 529 (770)
|.|||+|.+|+||++|..
T Consensus 411 g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 411 ECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp TEEEEEEGGGTEEEEEEE
T ss_pred CEEEEEECCCCeEEEEcc
Confidence 999999999999999865
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-27 Score=264.46 Aligned_cols=297 Identities=14% Similarity=0.097 Sum_probs=221.9
Q ss_pred EEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCCEEEEeC--ceEEEEcCC-CcEEEEeccCcc
Q psy4832 143 LHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDF--NLVRRLTPE-GNVFTVLQLSAT 219 (770)
Q Consensus 143 ~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~ 219 (770)
.|..+ .+..|++++|++..+. .++|....++|..|.+|+++++|+|||+|. ++|++++++ |.+.+++..
T Consensus 99 ~F~y~-~~~~v~tv~G~~~~~~----~~dG~~~~a~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--- 170 (409)
T 3hrp_A 99 TFKYE-QAQNVSTISGSASKDG----NDDGDLASAKFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG--- 170 (409)
T ss_dssp CEEEC-CCEEEEEEEECTTCCS----CCCBSTTTCCCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET---
T ss_pred eEEEe-cccEEEEeecccCCCc----cCCCcHHHcccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc---
Confidence 34444 7789999999987663 356777788999999999999999999998 599999987 566666542
Q ss_pred cccceeEEEEeCCCCcEEEEeCCCc-EEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEE
Q psy4832 220 QVSYQYYLALSPADGHLYISDAEKH-QILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLA 298 (770)
Q Consensus 220 ~~~~p~~lav~p~~g~lyvsd~~~~-~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIa 298 (770)
...|. +++++.++.||+++...+ +|++++.... .....+ +. +. ...+..|.+|+
T Consensus 171 -~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~-----~~~~~~-g~---~~--------------~~~~~~p~~ia 225 (409)
T 3hrp_A 171 -FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG-----WAPTRI-GQ---LG--------------STFSGKIGAVA 225 (409)
T ss_dssp -CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT-----TCEEEE-EE---CC--------------TTSCSCCCBCE
T ss_pred -CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC-----ceeEEe-ee---cc--------------chhcCCcEEEE
Confidence 45577 999987778999998654 9999964211 111121 10 00 01356799999
Q ss_pred Ecc-CCcEEEEeCCC-eEEECCCC-cEEEeecCCCCCCCcCCCccCCCcccccccccCcc-eEEEeCCCCeEEEEe--CC
Q psy4832 299 IKA-DKTMFIADGTN-IRVVSPEG-IIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPT-GLALSPLDDSLHFID--DR 372 (770)
Q Consensus 299 vd~-~G~lYvaD~~~-Ir~id~~G-~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~-gla~d~~~g~lyv~D--~~ 372 (770)
+++ +|.||++|..+ |++++.++ .+..+.+...... .-..|. +|+++|.++.|||+| ++
T Consensus 226 v~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~----------------~~~~P~~~ia~~p~~g~lyv~d~~~~ 289 (409)
T 3hrp_A 226 LDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS----------------LGTNPGPYLIYYFVDSNFYMSDQNLS 289 (409)
T ss_dssp ECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC----------------CCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred EeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC----------------CCCCccccEEEeCCCCEEEEEeCCCC
Confidence 999 89999999866 99999864 4544433321110 011366 999999668999999 68
Q ss_pred EEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeC-CCCce
Q psy4832 373 VIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADI-DARKV 451 (770)
Q Consensus 373 ~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~-~~~ri 451 (770)
+|++++.+|.+.+++|.+..... . + ..+..+.|..|.+|+++++|+|||||. .+++
T Consensus 290 ~I~~~~~~g~~~~~~g~~~~~g~--~-------------------d-g~~~~~~~~~P~gia~d~dG~lyvad~~~~~~- 346 (409)
T 3hrp_A 290 SVYKITPDGECEWFCGSATQKTV--Q-------------------D-GLREEALFAQPNGMTVDEDGNFYIVDGFKGYC- 346 (409)
T ss_dssp EEEEECTTCCEEEEEECTTCCSC--B-------------------C-EEGGGCBCSSEEEEEECTTCCEEEEETTTTCE-
T ss_pred EEEEEecCCCEEEEEeCCCCCCc--C-------------------C-CcccccEeCCCeEEEEeCCCCEEEEeCCCCCE-
Confidence 99999999999999886522111 0 1 134567789999999999999999999 8875
Q ss_pred eeEEEEc-CCCcEEEeecCcc-CCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeec
Q psy4832 452 NALRVID-STGRMFDFAGRWQ-SDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQH 529 (770)
Q Consensus 452 ~~i~~i~-~~G~i~~~aG~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~ 529 (770)
|++++ ++|.+++++|... .+. ..+.+..++|+.|.+||++++|.|||+|.++++|+++..
T Consensus 347 --I~~~~~~~G~v~~~~g~~~~~g~----------------~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 347 --LRKLDILDGYVSTVAGQVDVASQ----------------IDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp --EEEEETTTTEEEEEEECTTCBSC----------------CCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred --EEEEECCCCEEEEEeCCCCCCCc----------------CCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 78888 8999999998741 111 123456788999999999999999999999999999863
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-24 Score=233.14 Aligned_cols=266 Identities=18% Similarity=0.240 Sum_probs=193.6
Q ss_pred cccccccCceEEEEcCCCCEEEEeC-c-------------------------eEEEEcCC-CcEEEEeccCcccccceeE
Q psy4832 174 ARDARLLTPVALTSGPDGSLYVGDF-N-------------------------LVRRLTPE-GNVFTVLQLSATQVSYQYY 226 (770)
Q Consensus 174 ~~~~~l~~P~~la~~~dG~lyv~d~-~-------------------------~I~~i~~~-G~v~~~~~~~~~~~~~p~~ 226 (770)
....+|..|.+|+++++|+|||++. + .|.+++++ |++...++ ...+..|.+
T Consensus 18 ~~~~~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~p~g 95 (329)
T 3fvz_A 18 GVYLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG--KNLFYLPHG 95 (329)
T ss_dssp GGGCCCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC--TTTCSSEEE
T ss_pred hhceecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC--CCccCCceE
Confidence 4467899999999999999999987 3 49999985 99887765 456789999
Q ss_pred EEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCc--EEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CC
Q psy4832 227 LALSPADGHLYISDAEKHQILRVLSLESVADPSIN--WEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DK 303 (770)
Q Consensus 227 lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~--~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G 303 (770)
|+++| +|+|||+|..+++|+++ +++|. .....+... ..|. ....|..|.+|++++ +|
T Consensus 96 ia~d~-~g~l~v~d~~~~~v~~~-------~~~g~~~~~~~~~~~~--------~~g~----~~~~~~~P~~ia~~~~~g 155 (329)
T 3fvz_A 96 LSIDT-DGNYWVTDVALHQVFKL-------DPHSKEGPLLILGRSM--------QPGS----DQNHFCQPTDVAVEPSTG 155 (329)
T ss_dssp EEECT-TSCEEEEETTTTEEEEE-------CTTCSSCCSEEESBTT--------BCCC----STTCCSSEEEEEECTTTC
T ss_pred EEECC-CCCEEEEECCCCEEEEE-------eCCCCeEEEEEecccC--------CCCC----CccccCCCcEEEEeCCCC
Confidence 99997 88899999999999999 55655 222222211 1111 124578999999999 89
Q ss_pred cEEEEeC-CC--eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCC-CeEEEEe--CCEEEEE
Q psy4832 304 TMFIADG-TN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLD-DSLHFID--DRVIFKL 377 (770)
Q Consensus 304 ~lYvaD~-~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~-g~lyv~D--~~~I~~i 377 (770)
+|||+|+ .+ |++++++|.+...++..... .......|..|.+|+++| + ++|||+| +++|+++
T Consensus 156 ~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~-----------~~~~~~~~~~p~gia~d~-~~g~l~v~d~~~~~I~~~ 223 (329)
T 3fvz_A 156 AVFVSDGYCNSRIVQFSPSGKFVTQWGEESSG-----------SSPRPGQFSVPHSLALVP-HLDQLCVADRENGRIQCF 223 (329)
T ss_dssp CEEEEECSSCCEEEEECTTSCEEEEECEECCS-----------SSCCTTEESCEEEEEEET-TTTEEEEEETTTTEEEEE
T ss_pred eEEEEeCCCCCeEEEEcCCCCEEEEeccCCCC-----------CCCCCcccCCCcEEEEEC-CCCEEEEEECCCCEEEEE
Confidence 9999996 44 99999999887776543221 112245788999999999 6 9999999 6899999
Q ss_pred cCC-CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEE
Q psy4832 378 TND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRV 456 (770)
Q Consensus 378 ~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~ 456 (770)
+++ |++......+... .. .......| +++++.+|++||++..+++ |+.
T Consensus 224 ~~~~G~~~~~~~~~~~~-----~~----------------------~~~~~~~p-g~~~~~~g~~~v~~~~~~~---v~~ 272 (329)
T 3fvz_A 224 KTDTKEFVREIKHASFG-----RN----------------------VFAISYIP-GFLFAVNGKPYFGDQEPVQ---GFV 272 (329)
T ss_dssp ETTTCCEEEEECCTTTT-----TC----------------------EEEEEEET-TEEEEEECCCCTTCSCCCC---EEE
T ss_pred ECCCCcEEEEEeccccC-----CC----------------------cceeeecC-CEEEEeCCCEEeccCCCcE---EEE
Confidence 987 8865544322111 00 00001123 5555557888888887765 667
Q ss_pred Ec-CCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeecC
Q psy4832 457 ID-STGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHY 530 (770)
Q Consensus 457 i~-~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~ 530 (770)
++ .+|++....+.. ...+..|.+|+++|+|.|||+|.++++|+++...
T Consensus 273 ~~~~~g~~~~~~~~~--------------------------~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 273 MNFSSGEIIDVFKPV--------------------------RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EETTTCCEEEEECCS--------------------------SSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred EEcCCCeEEEEEcCC--------------------------CCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 76 577766655322 1346789999999999999999999999998654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.8e-24 Score=237.05 Aligned_cols=283 Identities=14% Similarity=0.152 Sum_probs=198.1
Q ss_pred eeeecCCCeEEEC-CCccEEecccCCCeEEEEeccC-ccCCccCCCCCcccccccccCceEEEE-------cCCCC-EEE
Q psy4832 126 HHYNFHEGILQKG-DGSSLHLKHEFPRTVSVVMGTG-LQRPLVCKDCDGVARDARLLTPVALTS-------GPDGS-LYV 195 (770)
Q Consensus 126 ~~~~~~~gil~~~-dG~~~~~~~~~~~~i~~v~g~G-~~~~~~~~~~~g~~~~~~l~~P~~la~-------~~dG~-lyv 195 (770)
..|..|.++..++ ++.+||+++.....|.++.-.+ ....+. .. ....+.+|.+|++ +++|. |||
T Consensus 136 ~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~---~~---~~~~~~~p~~ia~~~~~~~~d~~G~~lyv 209 (496)
T 3kya_A 136 CGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPL---NI---NTIPTNRIRSIAFNKKIEGYADEAEYMIV 209 (496)
T ss_dssp BCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEE---CC---TTSSCSBEEEEEECCCBTTTBCTTCEEEE
T ss_pred cccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEE---cc---CccccCCCcEEEEeecccccCCCCCEEEE
Confidence 4577899999997 5668999885566777776433 322221 01 1135788999999 99998 999
Q ss_pred EeCc--------eEEEEc--CCCcEE-----EEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEecc-------C
Q psy4832 196 GDFN--------LVRRLT--PEGNVF-----TVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSL-------E 253 (770)
Q Consensus 196 ~d~~--------~I~~i~--~~G~v~-----~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~-------~ 253 (770)
+|.+ .|.+++ .+|.+. ..+ ..+.+|.+++++|.++.||++|..+++|++++.. +
T Consensus 210 ad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v----~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~t 285 (496)
T 3kya_A 210 AIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLI----AAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKN 285 (496)
T ss_dssp EECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEE----EEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHT
T ss_pred EeCCCCCcccCceEEEEecCCCCceeecccceee----ccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccC
Confidence 9873 277774 445653 222 1467899999999899999999999999999653 1
Q ss_pred Ccc-CC-----CCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEECCCCc---
Q psy4832 254 SVA-DP-----SINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVSPEGI--- 321 (770)
Q Consensus 254 ~~~-~~-----~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id~~G~--- 321 (770)
... .+ .|....++.. ..-..|.+|+++++|+ |||+|+.+ |++++.++.
T Consensus 286 g~~~tp~~~~~~g~~~~l~~~--------------------~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~ 345 (496)
T 3kya_A 286 GGSWDPIVKNNPNTFKQLFTI--------------------ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE 345 (496)
T ss_dssp TCCCCCBGGGCTTTEEEEEEC--------------------SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred ceeecccccccccccceeEec--------------------CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce
Confidence 100 00 0001111110 0123689999999998 89999877 999887653
Q ss_pred E---EEeecC-CCCCCCcCCCccCCCcccccccccCcc-eEEEe-------CCCCeEEEEe--CCEEEEEcCCCcEEEEe
Q psy4832 322 I---HTLIGH-HKHHNIWSPFNCHRSFPASTAQLQWPT-GLALS-------PLDDSLHFID--DRVIFKLTNDLKVKIVA 387 (770)
Q Consensus 322 i---~t~~g~-~~~~~~~~p~~~~~~~~~~~~~l~~P~-gla~d-------~~~g~lyv~D--~~~I~~i~~~G~v~~va 387 (770)
+ .+++|. +..+ +. .+++..++|++|. +++++ + +|+|||+| +|+|++|+++|.+++++
T Consensus 346 ~~~~~~~aG~~g~~G-------~~-DG~~~~a~f~~P~~gv~vd~~~~~~~~-~g~lyVaD~~N~rIr~i~~~G~v~Tia 416 (496)
T 3kya_A 346 FITPYNFVGGYKQSG-------YR-DDVGTEARMNNPCQGVFVKNPDYTGEE-EYDFYFVDRLNFCVRKVTPEGIVSTYA 416 (496)
T ss_dssp ECCCEEEEEBTTBCC-------CB-CCBGGGCBCSSEEEEEEEECTTCCSSC-CEEEEEEEGGGTEEEEECTTCBEEEEE
T ss_pred ecccEEecCCCCCCc-------cc-CCcccccccCCCeEEEEEccccccccC-CCeEEEEECCCCEEEEEeCCCCEEEEe
Confidence 3 577876 2221 12 2577889999999 88887 5 78999999 79999999999999999
Q ss_pred cCCCCC-----C-CCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCC-CCEEEEeCCCCceeeEEEEcCC
Q psy4832 388 GIPLHC-----R-TGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPT-GDLYIADIDARKVNALRVIDST 460 (770)
Q Consensus 388 G~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~-G~lyVaD~~~~ri~~i~~i~~~ 460 (770)
|.+..+ . .+.. ++..+..++|..|.||+++++ |+|||||+.|+| ||+++.+
T Consensus 417 G~g~~~~~~~~~~~G~~-------------------dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~r---Irki~~~ 474 (496)
T 3kya_A 417 GRGASTSLADGNQWGTD-------------------DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHT---IRTISME 474 (496)
T ss_dssp ESCTTHHHHHSCSCCCC-------------------CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTE---EEEEEEC
T ss_pred cccccccccCccccccC-------------------CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCE---EEEEECC
Confidence 975431 0 0100 223467788999999999996 999999999986 7888888
Q ss_pred CcEEEeecCc
Q psy4832 461 GRMFDFAGRW 470 (770)
Q Consensus 461 G~i~~~aG~~ 470 (770)
+.+ .++|.+
T Consensus 475 ~~~-~~~~~~ 483 (496)
T 3kya_A 475 QEE-NVAGDE 483 (496)
T ss_dssp CCC-------
T ss_pred CCc-ccccCC
Confidence 876 334443
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-24 Score=239.47 Aligned_cols=283 Identities=16% Similarity=0.094 Sum_probs=201.9
Q ss_pred EEEeecccccccCCCCCc---cceeeeeecCCCeEEECC--CccEEecccCCCeEEEEec-cCccCCccCCCCCcccccc
Q psy4832 104 TCTLQGFDVDISDIGGWS---LDVHHHYNFHEGILQKGD--GSSLHLKHEFPRTVSVVMG-TGLQRPLVCKDCDGVARDA 177 (770)
Q Consensus 104 ~~~l~g~~~~~~~~ggw~---l~~~~~~~~~~gil~~~d--G~~~~~~~~~~~~i~~v~g-~G~~~~~~~~~~~g~~~~~ 177 (770)
..++.|...+.....+|. ++....|+.|.|++.+.+ ..+||+++.. +.|.++.. +|....+ ..
T Consensus 111 VsTv~G~~~~~~g~~~~~dG~~~~a~~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~----------~~ 179 (433)
T 4hw6_A 111 VTTFLGKLYENNTKWDVLAGPFDDCGAFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIK----------TT 179 (433)
T ss_dssp EEEEECCCBTTTTBCCCCCEETTSCCCCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEE----------CC
T ss_pred EeeeecceeccCCCccccCCchHHhcccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEe----------ec
Confidence 357888322222222332 223347899999999974 4479999844 78888875 4444322 12
Q ss_pred cccCceEEEEcCCCCEEEEeCc------eEEEEcCCCcEE--EEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEE
Q psy4832 178 RLLTPVALTSGPDGSLYVGDFN------LVRRLTPEGNVF--TVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRV 249 (770)
Q Consensus 178 ~l~~P~~la~~~dG~lyv~d~~------~I~~i~~~G~v~--~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i 249 (770)
.+..|.+|+++++|+|||+|.. .+..+++++... ..+ ..+..|.+++++|.+|.|||+|..+++|+++
T Consensus 180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~----~~~~~P~giavd~~~G~lyv~d~~~~~V~~~ 255 (433)
T 4hw6_A 180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSL----CNARGAKTCAVHPQNGKIYYTRYHHAMISSY 255 (433)
T ss_dssp CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEE----EECSSBCCCEECTTTCCEEECBTTCSEEEEE
T ss_pred CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccc----cccCCCCEEEEeCCCCeEEEEECCCCEEEEE
Confidence 6778999999999999999972 366666554432 122 2578899999998899999999999999999
Q ss_pred eccCCccCCC-CcE-EEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEECCC---Cc
Q psy4832 250 LSLESVADPS-INW-EVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVSPE---GI 321 (770)
Q Consensus 250 ~~~~~~~~~~-g~~-~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id~~---G~ 321 (770)
+++ |.+ ..+...+. ...|.+|+++++|+ |||+|..+ |++++.+ +.
T Consensus 256 -------d~~~g~~~~~~~~~~~--------------------~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~ 308 (433)
T 4hw6_A 256 -------DPATGTLTEEEVMMDT--------------------KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGK 308 (433)
T ss_dssp -------CTTTCCEEEEEEECSC--------------------CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCC
T ss_pred -------ECCCCeEEEEEeccCC--------------------CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcc
Confidence 454 665 34432211 11356899999998 99999876 9998765 32
Q ss_pred ---EEEeecC-CCCCCCcCCCccCCCcccccccccCcceEEE---------eCCCCeEEEEe--CCEEEEEcCCCcEEEE
Q psy4832 322 ---IHTLIGH-HKHHNIWSPFNCHRSFPASTAQLQWPTGLAL---------SPLDDSLHFID--DRVIFKLTNDLKVKIV 386 (770)
Q Consensus 322 ---i~t~~g~-~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~---------d~~~g~lyv~D--~~~I~~i~~~G~v~~v 386 (770)
+.+++|. +..+ | ..+....++|.+|.+|++ ++ +|+|||+| +++|++++++|.++++
T Consensus 309 ~~~~~~~ag~~g~~g--~------~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g~lyvaD~~n~~I~~~~~~G~v~t~ 379 (433)
T 4hw6_A 309 LAVPYIVCGQHSSPG--W------VDGMGTGARLWGPNQGIFVKNEAYAGEED-EYDFYFCDRDSHTVRVLTPEGRVTTY 379 (433)
T ss_dssp BCCCEEEEECTTCCC--C------BCEEGGGSBCSSEEEEEEEECGGGTTSSC-CEEEEEEETTTTEEEEECTTSEEEEE
T ss_pred cCcEEEEEecCCCCc--c------CCCcccceEEcCCccEEEEccccccccCC-CCcEEEEECCCCEEEEECCCCCEEEE
Confidence 3567775 2211 1 134556788999999999 77 89999999 6999999999999999
Q ss_pred ecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEc-CCCCEEEEeCCCCceeeEEEEcC
Q psy4832 387 AGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFS-PTGDLYIADIDARKVNALRVIDS 459 (770)
Q Consensus 387 aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd-~~G~lyVaD~~~~ri~~i~~i~~ 459 (770)
+|.+..+..+.. ++..+..+.|..|.+||++ ++|+|||||..|+| ||++++
T Consensus 380 ~G~g~~~~~G~~-------------------dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~r---Ir~i~~ 431 (433)
T 4hw6_A 380 AGRGNSREWGYV-------------------DGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHR---VRKIAP 431 (433)
T ss_dssp ECCCTTCSSCCB-------------------CEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTE---EEEEEE
T ss_pred EeCCCCCccccC-------------------CCccccccEeCCCcEEEEECCCCEEEEEeCCCCE---EEEEec
Confidence 998653222211 1224466789999999999 79999999999987 566654
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-23 Score=243.14 Aligned_cols=344 Identities=16% Similarity=0.157 Sum_probs=237.7
Q ss_pred eecCCCeEEECCCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcC-CCCEEEEeC---ceEEE
Q psy4832 128 YNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGP-DGSLYVGDF---NLVRR 203 (770)
Q Consensus 128 ~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~-dG~lyv~d~---~~I~~ 203 (770)
+..|+|++++..+.++|+++...+.|.++.-+|..+.. .....|..|.+|++|| +|.|||+|. .+|.|
T Consensus 83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~--------l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r 154 (619)
T 3s94_A 83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV--------LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIER 154 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--------EECSSCSCCCCEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEE--------EEeCCCCCCceEEEecCCCeEEEeccCCCCEEEE
Confidence 34699999999888999999888899999877765421 1125688999999999 588999996 49999
Q ss_pred EcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCc---------c---------------CC-
Q psy4832 204 LTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESV---------A---------------DP- 258 (770)
Q Consensus 204 i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~---------~---------------~~- 258 (770)
.+++|+..+++. ...+.+|+||++|+.++.|||+|..+++|++++..+.. . |.
T Consensus 155 ~~~dG~~~~~l~--~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~ 232 (619)
T 3s94_A 155 AGMDGSSRFIII--NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWS 232 (619)
T ss_dssp EETTSCSCEEEE--CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTT
T ss_pred EECCCCceEEEE--eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCC
Confidence 999998665543 34688999999999899999999999999988654420 0 00
Q ss_pred CCcEEE-----------EECC------------------Cccc------------------------cCCC-----CCCc
Q psy4832 259 SINWEV-----------AVGS------------------GERC------------------------IPGD-----ETNC 280 (770)
Q Consensus 259 ~g~~~~-----------vaG~------------------g~~~------------------------~p~~-----~~~~ 280 (770)
++.+.. +... ...| .+++ ...|
T Consensus 233 ~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C 312 (619)
T 3s94_A 233 THSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 312 (619)
T ss_dssp TCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCB
T ss_pred CCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCccc
Confidence 001111 0000 0011 1111 0111
Q ss_pred CCCcc-------------------------cccccccCcceEEEcc-CCcEEEEeCCC--eEEECCCC-cEEEeecCCCC
Q psy4832 281 GDNGP-------------------------ALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVSPEG-IIHTLIGHHKH 331 (770)
Q Consensus 281 g~~g~-------------------------~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id~~G-~i~t~~g~~~~ 331 (770)
-++.. .....+..|.+|++|+ ++.||++|..+ |++++++| ...+++..
T Consensus 313 ~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~--- 389 (619)
T 3s94_A 313 KDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA--- 389 (619)
T ss_dssp CSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---
T ss_pred CCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC---
Confidence 11000 0001256788999997 78899999765 99999887 33444421
Q ss_pred CCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccc
Q psy4832 332 HNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSK 409 (770)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~ 409 (770)
.+..|.|||+|+.+++||++| +++|.+++.+|....+..
T Consensus 390 ------------------~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~--------------------- 430 (619)
T 3s94_A 390 ------------------QIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILI--------------------- 430 (619)
T ss_dssp ------------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---------------------
T ss_pred ------------------CCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEE---------------------
Confidence 366899999998789999999 589999998887443331
Q ss_pred cccccccCCcccccccccCCeeEEEEcC-CCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccC
Q psy4832 410 TKKSTVQDDSVRASNMDLGSLTALAFSP-TGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKN 488 (770)
Q Consensus 410 ~~~~~~~~~~~~a~~~~l~~P~giavd~-~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~ 488 (770)
...|..|.+||+|| .|.|||+|++.. .+|.+.+.+|........
T Consensus 431 --------------~~~l~~P~~iavdp~~G~ly~tD~g~~--~~I~r~~~dG~~~~~l~~------------------- 475 (619)
T 3s94_A 431 --------------SEDLEEPRAIVLDPMVGYMYWTDWGEI--PKIERAALDGSDRVVLVN------------------- 475 (619)
T ss_dssp --------------CTTCCSEEEEEEETTTTEEEEEECSSS--CEEEEEETTSCSCEEEEC-------------------
T ss_pred --------------ECCCCCeeeEEEEcCCCcEEEecCCCC--CEEEEEccCCCccEEEEe-------------------
Confidence 12367899999998 599999998763 257888888863332211
Q ss_pred ccCcccccceecCCeeEEEEcC-CCcEEEEcCCCceEEeeecCCcccC------CCCcEEEeCCCCCcEEEEecCCceEE
Q psy4832 489 SKETLLTSTARFTSISALSVSP-DGVVNVADQGSLHILALQHYLPTHD------EHGEFKIPYPATNEIYVFNRYGQHIT 561 (770)
Q Consensus 489 ~~d~~~~~~~~l~~P~giav~~-dG~lyvaD~~~~~I~~i~~~~~~~~------~~g~~~i~~~~~~e~yvfd~~G~~~~ 561 (770)
..|..|.|||+|+ ++.||++|..+++|.++........ ....+.++.. .+.+|+.|...+.+.
T Consensus 476 ---------~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~-~~~ly~tD~~~~~I~ 545 (619)
T 3s94_A 476 ---------TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLL-GDYVYWTDWQRRSIE 545 (619)
T ss_dssp ---------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEE-TTEEEEECTTSSCEE
T ss_pred ---------CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEE-CCEEEEeecCCCeEE
Confidence 1267899999997 6799999999999999976543110 1122333332 337888887777777
Q ss_pred EEcCCCC
Q psy4832 562 TRDMTSG 568 (770)
Q Consensus 562 t~d~~tg 568 (770)
..+..++
T Consensus 546 ~~~k~~g 552 (619)
T 3s94_A 546 RVHKRSA 552 (619)
T ss_dssp EEESSSC
T ss_pred EEEcCCC
Confidence 7777766
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=234.53 Aligned_cols=269 Identities=14% Similarity=0.103 Sum_probs=195.0
Q ss_pred ccceeeeeecCCCeEEEC-CCccEEecccCCCeEEEEeccCcc-CCccCCCCCcccccccccCceEEEEcCCCC-EEEEe
Q psy4832 121 SLDVHHHYNFHEGILQKG-DGSSLHLKHEFPRTVSVVMGTGLQ-RPLVCKDCDGVARDARLLTPVALTSGPDGS-LYVGD 197 (770)
Q Consensus 121 ~l~~~~~~~~~~gil~~~-dG~~~~~~~~~~~~i~~v~g~G~~-~~~~~~~~~g~~~~~~l~~P~~la~~~dG~-lyv~d 197 (770)
.++.-..|+.|.+++.++ ++.++|+++.. ..|.++...+.. ..+ ...+..|.+|+++++|+ |||+|
T Consensus 129 ~~~~~~~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~----------~~~~~~P~~ia~d~~G~~lyvad 197 (430)
T 3tc9_A 129 PFDDCGGFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTV----------YSGLSKVRTICWTHEADSMIITN 197 (430)
T ss_dssp EGGGCBCCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEE----------ECCCSCEEEEEECTTSSEEEEEE
T ss_pred CHHHccCCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEE----------ecCCCCcceEEEeCCCCEEEEEe
Confidence 344445688999999996 45579999844 777777655432 211 12567899999999998 99999
Q ss_pred Cc------eEEEEcCCCcEE--EEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEE-EEECC
Q psy4832 198 FN------LVRRLTPEGNVF--TVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWE-VAVGS 268 (770)
Q Consensus 198 ~~------~I~~i~~~G~v~--~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~-~vaG~ 268 (770)
.+ .+..++++|.+. ..+ ..+.+|.+++++|.+|.|||+|..+++|++++ +++... .+...
T Consensus 198 ~~~~~~~~~v~~~~~~g~~~~~~~l----~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~-------~~~~~~~~~~~~ 266 (430)
T 3tc9_A 198 DQNNNDRPNNYILTRESGFKVITEL----TKGQNCNGAETHPINGELYFNSWNAGQVFRYD-------FTTQETTPLFTI 266 (430)
T ss_dssp CCSCTTSEEEEEEEGGGTSCSEEEE----EECSSCCCEEECTTTCCEEEEETTTTEEEEEE-------TTTTEEEEEEEC
T ss_pred CCCCcccceEEEEeCCCceeeeeee----ccCCCceEEEEeCCCCEEEEEECCCCEEEEEE-------CCCCcEEEEEEc
Confidence 72 577788877654 222 24788999999988999999999999999994 444332 33221
Q ss_pred CccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEECCCCc------EEEeecCCCCCCCcCCCc
Q psy4832 269 GERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVSPEGI------IHTLIGHHKHHNIWSPFN 339 (770)
Q Consensus 269 g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id~~G~------i~t~~g~~~~~~~~~p~~ 339 (770)
+. ...|.+|+++++|+ |||+|..+ |++++.++. +.+++|...... |
T Consensus 267 ~~--------------------~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g-~---- 321 (430)
T 3tc9_A 267 QD--------------------SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKD-W---- 321 (430)
T ss_dssp SS--------------------SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBC-C----
T ss_pred CC--------------------CCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCC-C----
Confidence 10 23699999999998 99999876 999887753 456776522110 1
Q ss_pred cCCCcccccccccCcc-eEEEeC-------CCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccc
Q psy4832 340 CHRSFPASTAQLQWPT-GLALSP-------LDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSK 409 (770)
Q Consensus 340 ~~~~~~~~~~~l~~P~-gla~d~-------~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~ 409 (770)
.......++|..|. ++++++ .+|+|||+| +++|++++++|++++++|.+..+..+..
T Consensus 322 --~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~----------- 388 (430)
T 3tc9_A 322 --VDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYN----------- 388 (430)
T ss_dssp --BCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCB-----------
T ss_pred --CCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCccc-----------
Confidence 12345567899999 899953 168999999 6999999999999999987542221110
Q ss_pred cccccccCCcccccccccCCeeEEEEcC-CCCEEEEeCCCCceeeEEEEcCC
Q psy4832 410 TKKSTVQDDSVRASNMDLGSLTALAFSP-TGDLYIADIDARKVNALRVIDST 460 (770)
Q Consensus 410 ~~~~~~~~~~~~a~~~~l~~P~giavd~-~G~lyVaD~~~~ri~~i~~i~~~ 460 (770)
++..+..++|..|.+|++++ +|.|||||..++| ||+++++
T Consensus 389 --------dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~r---Ir~i~~e 429 (430)
T 3tc9_A 389 --------DGDLRQEARFNHPEGIVYDEERECFFIGDRENRR---IRKIGYE 429 (430)
T ss_dssp --------CEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTE---EEEEEEC
T ss_pred --------CCCchhhcEeCCCcEEEEECCCCEEEEEECCCCe---EEEEccC
Confidence 11234567899999999999 6999999999986 5666543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-21 Score=221.65 Aligned_cols=304 Identities=17% Similarity=0.176 Sum_probs=202.3
Q ss_pred cccccCceEEEEcC-CCCEEEEeC--ceEEEEcCCCcE--EEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 176 DARLLTPVALTSGP-DGSLYVGDF--NLVRRLTPEGNV--FTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 176 ~~~l~~P~~la~~~-dG~lyv~d~--~~I~~i~~~G~v--~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
...+..|.+|++++ +|.|||+|. ++|+|++.+|.. .+++ ..++..|.|||+|+.+++|||+|..+++|.++
T Consensus 36 ~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~---~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~- 111 (619)
T 3s94_A 36 VGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV---VSGLLSPDGLACDWLGEKLYWTDSETNRIEVS- 111 (619)
T ss_dssp CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEE---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEE-
T ss_pred EcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEE---eCCCCCcCeEEEEecCCEEEEEeCCCCEEEEE-
Confidence 45678899999998 788999998 599999999873 3454 34678899999998899999999999999999
Q ss_pred ccCCccCCCCcEE-EEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC---eEEECCCCcEEEe
Q psy4832 251 SLESVADPSINWE-VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN---IRVVSPEGIIHTL 325 (770)
Q Consensus 251 ~~~~~~~~~g~~~-~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~---Ir~id~~G~i~t~ 325 (770)
+.+|... ++.. ..+..|.+||+|+ +|.|||+|.+. |.+.+.+|...+.
T Consensus 112 ------~~dG~~~~~l~~---------------------~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~ 164 (619)
T 3s94_A 112 ------NLDGSLRKVLFW---------------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI 164 (619)
T ss_dssp ------ETTSCSCEEEEC---------------------SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred ------ECCCCCEEEEEe---------------------CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEE
Confidence 4556532 3321 2266899999998 58899999763 9999999854333
Q ss_pred ecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccc
Q psy4832 326 IGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDF 403 (770)
Q Consensus 326 ~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~ 403 (770)
+.. ..+.+|.||++|+.++.|||+| +++|++++.+|........
T Consensus 165 l~~--------------------~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-------------- 210 (619)
T 3s94_A 165 IIN--------------------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-------------- 210 (619)
T ss_dssp EEC--------------------SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------------
T ss_pred EEe--------------------CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe--------------
Confidence 322 1377999999998778999999 5899999999864433211
Q ss_pred cccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCc-EEEeecC-------------
Q psy4832 404 KDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGR-MFDFAGR------------- 469 (770)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~-i~~~aG~------------- 469 (770)
..+..|.||+++.+ .|||+|+.+++|.++.+. +|+ +..+...
T Consensus 211 ---------------------~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~--tg~~~~~i~~~~~~p~~i~v~~~~ 266 (619)
T 3s94_A 211 ---------------------GSLPHPFALTLFED-ILYWTDWSTHSILACNKY--TGEGLREIHSDIFSPMDIHAFSQQ 266 (619)
T ss_dssp --------------------------CCCEEESSS-EEEEECTTTCSEEEEESS--SCCCCEECCSCCCCCSEEEECCGG
T ss_pred ---------------------CCCCCceEEEEeCC-EEEEecCCCCEEEEEECC--CCcccEEEecCCCCCcEEEEEccc
Confidence 12467999999876 899999999876555432 332 1222111
Q ss_pred -ccCCCCCcC-----CC------------CCcccccCcc--C---------c----------------------ccccce
Q psy4832 470 -WQSDKKNCN-----TT------------NCAEFEKNSK--E---------T----------------------LLTSTA 498 (770)
Q Consensus 470 -~~~~~~~~~-----~~------------~~~~~~~~~~--d---------~----------------------~~~~~~ 498 (770)
...+...|. |. .|.|..+..- | . ......
T Consensus 267 ~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~ 346 (619)
T 3s94_A 267 RQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLE 346 (619)
T ss_dssp GSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCS
T ss_pred cCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEecc
Confidence 001223442 21 1444332100 0 0 000012
Q ss_pred ecCCeeEEEEcC-CCcEEEEcCCCceEEeeecCCccc----C-C-CCcEEEeCC-CCCcEEEEecCCceEEEEcCCCC
Q psy4832 499 RFTSISALSVSP-DGVVNVADQGSLHILALQHYLPTH----D-E-HGEFKIPYP-ATNEIYVFNRYGQHITTRDMTSG 568 (770)
Q Consensus 499 ~l~~P~giav~~-dG~lyvaD~~~~~I~~i~~~~~~~----~-~-~g~~~i~~~-~~~e~yvfd~~G~~~~t~d~~tg 568 (770)
.+..|.+|++++ +|.||++|..+++|+++....... . . .....++.+ .++.+|+.|.....+...++.+.
T Consensus 347 ~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 347 DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence 367899999998 789999999999999997754211 1 1 123344444 46778888877777777766554
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-20 Score=219.63 Aligned_cols=191 Identities=19% Similarity=0.182 Sum_probs=147.1
Q ss_pred ccccCceEEEEcC-CCCEEEEeC--ceEEEEcCCCc-EEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEecc
Q psy4832 177 ARLLTPVALTSGP-DGSLYVGDF--NLVRRLTPEGN-VFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSL 252 (770)
Q Consensus 177 ~~l~~P~~la~~~-dG~lyv~d~--~~I~~i~~~G~-v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~ 252 (770)
..+..|.+|++|+ +|.|||+|. ++|++++++|. +.+++ ..++..|.|||+|+.+++|||+|..+++|.+++
T Consensus 34 ~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~---~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~-- 108 (628)
T 4a0p_A 34 TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV---EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSK-- 108 (628)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE--
T ss_pred CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE---eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEe--
Confidence 3577899999998 789999997 59999999885 44555 345678999999988999999999999999994
Q ss_pred CCccCCCCcEE-EEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCC-C--eEEECCCCcEEEeec
Q psy4832 253 ESVADPSINWE-VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGT-N--IRVVSPEGIIHTLIG 327 (770)
Q Consensus 253 ~~~~~~~g~~~-~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~-~--Ir~id~~G~i~t~~g 327 (770)
++|... ++.. ..+..|.+||+|| +|.||++|.+ + |.+++.+|...+.+.
T Consensus 109 -----~dG~~~~~l~~---------------------~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~ 162 (628)
T 4a0p_A 109 -----LDGQHRQVLVW---------------------KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV 162 (628)
T ss_dssp -----TTSTTCEEEEC---------------------SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred -----cCCCcEEEEEe---------------------CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE
Confidence 455432 2221 2266899999997 7999999965 3 999999885333332
Q ss_pred CCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccc
Q psy4832 328 HHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKD 405 (770)
Q Consensus 328 ~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~ 405 (770)
. .+.+|.||++|+.++.|||+| +++|.+++.+|....+..
T Consensus 163 ~---------------------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~----------------- 204 (628)
T 4a0p_A 163 P---------------------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIA----------------- 204 (628)
T ss_dssp C---------------------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----------------
T ss_pred C---------------------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEee-----------------
Confidence 1 267999999999678999999 589999998874222221
Q ss_pred cccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEE
Q psy4832 406 KQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRV 456 (770)
Q Consensus 406 ~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~ 456 (770)
..+..|.||+++. +.|||+|+.+++|.++.+
T Consensus 205 -------------------~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk 235 (628)
T 4a0p_A 205 -------------------DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANK 235 (628)
T ss_dssp -------------------ECCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred -------------------ccCCCceEEEEEC-CEEEEecCCCCEEEEEEC
Confidence 1256799999986 789999999987544443
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-22 Score=229.91 Aligned_cols=353 Identities=19% Similarity=0.176 Sum_probs=239.6
Q ss_pred eecCCCeEEECCCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcC-CCCEEEEeC---ceEEE
Q psy4832 128 YNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGP-DGSLYVGDF---NLVRR 203 (770)
Q Consensus 128 ~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~-dG~lyv~d~---~~I~~ 203 (770)
+..|+|++++..+.++|+++.....|.++.-+|..+.. .....|..|.+|++|| +|.|||+|. .+|.+
T Consensus 79 ~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~--------l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r 150 (628)
T 4a0p_A 79 LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV--------LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDR 150 (628)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE--------EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE--------EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEE
Confidence 35799999999988999999788899998877765421 1125678999999998 899999995 49999
Q ss_pred EcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCc-----------------------c----
Q psy4832 204 LTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESV-----------------------A---- 256 (770)
Q Consensus 204 i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~-----------------------~---- 256 (770)
++++|...+++. ..+.+|.+|++|+.++.|||+|..+++|.+++..+.. .
T Consensus 151 ~~~dG~~~~~l~---~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~ 227 (628)
T 4a0p_A 151 AAMDGSERTTLV---PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSR 227 (628)
T ss_dssp EETTSCSCEEEE---CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEETTEEEEEETTT
T ss_pred EeCCCCceEEEE---CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEECCEEEEecCCC
Confidence 999998665552 3688999999998889999999999888888754320 0
Q ss_pred ------C-CCC-cEEEEECC-----------------Cccc-----------------------cCCCC-----CCcCC-
Q psy4832 257 ------D-PSI-NWEVAVGS-----------------GERC-----------------------IPGDE-----TNCGD- 282 (770)
Q Consensus 257 ------~-~~g-~~~~vaG~-----------------g~~~-----------------------~p~~~-----~~~g~- 282 (770)
+ .+| +.+++... -..| .+++. ..|-.
T Consensus 228 ~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~ 307 (628)
T 4a0p_A 228 RSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAP 307 (628)
T ss_dssp TEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECC
T ss_pred CEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccc
Confidence 0 011 11111110 0011 11110 01100
Q ss_pred ------------------Cc-----ccccccccCcceEEEcc-CCcEEEEeCCC--eEEECCCCc-EEEeecCCCCCCCc
Q psy4832 283 ------------------NG-----PALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVSPEGI-IHTLIGHHKHHNIW 335 (770)
Q Consensus 283 ------------------~g-----~~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id~~G~-i~t~~g~~~~~~~~ 335 (770)
.. ......+..+.+|++|+ ++.||++|..+ |++++.+|. ..+++.....
T Consensus 308 ~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~---- 383 (628)
T 4a0p_A 308 TTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVP---- 383 (628)
T ss_dssp SSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------
T ss_pred cceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccc----
Confidence 00 00012345577899987 67899999866 999988873 2333321000
Q ss_pred CCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccc
Q psy4832 336 SPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKS 413 (770)
Q Consensus 336 ~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (770)
....+..|.|||+|+..++|||+| +++|.+++.+|+...+...
T Consensus 384 -----------~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~------------------------ 428 (628)
T 4a0p_A 384 -----------SQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLK------------------------ 428 (628)
T ss_dssp ---------------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCEEEEEEE------------------------
T ss_pred -----------cccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEe------------------------
Confidence 012367899999999778999999 5899999999986544311
Q ss_pred cccCCcccccccccCCeeEEEEcC-CCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCc
Q psy4832 414 TVQDDSVRASNMDLGSLTALAFSP-TGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKET 492 (770)
Q Consensus 414 ~~~~~~~~a~~~~l~~P~giavd~-~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~ 492 (770)
..+..|.+||++| .|.|||+|++.+. -+|.+.+.+|.........
T Consensus 429 -----------~~l~~Pr~iavdp~~g~ly~tD~g~~~-~~I~r~~~dG~~~~~l~~~---------------------- 474 (628)
T 4a0p_A 429 -----------GEQDRPRAVVVNPEKGYMYFTNLQERS-PKIERAALDGTEREVLFFS---------------------- 474 (628)
T ss_dssp -----------CTTCCEEEEEEETTTTEEEEEEEETTE-EEEEEEETTSCSCEEEECS----------------------
T ss_pred -----------CCCCceeeEEEecCCCeEEEeecCCCC-CeEEEEeCCCCCcEEEEec----------------------
Confidence 1256799999999 8999999998762 1577888888643322111
Q ss_pred ccccceecCCeeEEEEcCC-CcEEEEcCCCceEEeeecCCccc---C---CCCcEEEeCCCCCcEEEEecCCceEEEEcC
Q psy4832 493 LLTSTARFTSISALSVSPD-GVVNVADQGSLHILALQHYLPTH---D---EHGEFKIPYPATNEIYVFNRYGQHITTRDM 565 (770)
Q Consensus 493 ~~~~~~~l~~P~giav~~d-G~lyvaD~~~~~I~~i~~~~~~~---~---~~g~~~i~~~~~~e~yvfd~~G~~~~t~d~ 565 (770)
.+..|.||++|++ +.||++|..+++|.++....... . ....+.++... +.+|+.|...+.+...+.
T Consensus 475 ------~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k 547 (628)
T 4a0p_A 475 ------GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDM 547 (628)
T ss_dssp ------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred ------cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEEC
Confidence 2678999999985 79999999999999987644211 0 12345555444 688888887777777777
Q ss_pred CCCCcE
Q psy4832 566 TSGKPR 571 (770)
Q Consensus 566 ~tg~~~ 571 (770)
.+|...
T Consensus 548 ~~G~~~ 553 (628)
T 4a0p_A 548 TGREGR 553 (628)
T ss_dssp TSSSCC
T ss_pred cCCCCc
Confidence 766543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-21 Score=203.68 Aligned_cols=243 Identities=14% Similarity=0.266 Sum_probs=184.1
Q ss_pred cccccCceEEEEcCCCCEEEEeC--ceEEEEcCCCcEEEEeccC---cccccceeEEEEeCCCCcEEEEeCC-CcEEEEE
Q psy4832 176 DARLLTPVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLS---ATQVSYQYYLALSPADGHLYISDAE-KHQILRV 249 (770)
Q Consensus 176 ~~~l~~P~~la~~~dG~lyv~d~--~~I~~i~~~G~v~~~~~~~---~~~~~~p~~lav~p~~g~lyvsd~~-~~~I~~i 249 (770)
...|..|.+|+++++|+|||++. ++|++++++|+....+... ...+..|.+|++++.++.|||++.. +++|+++
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 46788999999999999999986 5899999999887766431 2356789999996558999999975 7899999
Q ss_pred eccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCCCcEEEeec
Q psy4832 250 LSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIG 327 (770)
Q Consensus 250 ~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~G~i~t~~g 327 (770)
+++|......+. ..+..|.+|+++++|+|||++..+ |++++++|.+...++
T Consensus 106 -------d~~g~~~~~~~~--------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~ 158 (286)
T 1q7f_A 106 -------NQYGQFVRKFGA--------------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFG 158 (286)
T ss_dssp -------CTTSCEEEEECT--------------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEE
T ss_pred -------CCCCcEEEEecC--------------------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeC
Confidence 556665443321 124579999999999999999754 999999987665553
Q ss_pred CCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccc
Q psy4832 328 HHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKD 405 (770)
Q Consensus 328 ~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~ 405 (770)
.. ..+..|.+|++++ +|+|||++ +++|++++++|......+..
T Consensus 159 ~~-------------------~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~--------------- 203 (286)
T 1q7f_A 159 CS-------------------KHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEGQYLRQIGGE--------------- 203 (286)
T ss_dssp CT-------------------TTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTCCEEEEESCT---------------
T ss_pred CC-------------------CccCCcEEEEECC-CCCEEEEECCCCEEEEEcCCCCEEEEEccC---------------
Confidence 31 1356799999999 99999999 68999999988754333211
Q ss_pred cccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCccc
Q psy4832 406 KQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEF 485 (770)
Q Consensus 406 ~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~ 485 (770)
..+..|.+|++|++|+|||++..++. +|++++++|+........
T Consensus 204 -------------------g~~~~p~~i~~d~~G~l~v~~~~~~~--~i~~~~~~g~~~~~~~~~--------------- 247 (286)
T 1q7f_A 204 -------------------GITNYPIGVGINSNGEILIADNHNNF--NLTIFTQDGQLISALESK--------------- 247 (286)
T ss_dssp -------------------TTSCSEEEEEECTTCCEEEEECSSSC--EEEEECTTSCEEEEEEES---------------
T ss_pred -------------------CccCCCcEEEECCCCCEEEEeCCCCE--EEEEECCCCCEEEEEccc---------------
Confidence 11456999999999999999988751 377888888754332111
Q ss_pred ccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeec
Q psy4832 486 EKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQH 529 (770)
Q Consensus 486 ~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~ 529 (770)
.....|.+|+++|+|.|||++. +++|+.++.
T Consensus 248 ------------~~~~~~~~i~~~~~g~l~vs~~-~~~v~v~~~ 278 (286)
T 1q7f_A 248 ------------VKHAQCFDVALMDDGSVVLASK-DYRLYIYRY 278 (286)
T ss_dssp ------------SCCSCEEEEEEETTTEEEEEET-TTEEEEEEC
T ss_pred ------------CCCCcceeEEECCCCcEEEECC-CCeEEEEEc
Confidence 0124589999999999999975 677776654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-20 Score=198.45 Aligned_cols=273 Identities=14% Similarity=0.166 Sum_probs=205.6
Q ss_pred ecCCCeEEECCCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCCEEEEeC--ceEEEEcC
Q psy4832 129 NFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDF--NLVRRLTP 206 (770)
Q Consensus 129 ~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~--~~I~~i~~ 206 (770)
..|.++..+.+| ++|+++...+.|..+...|....+. ....+..|.+|+++++|+|||++. ++|.++++
T Consensus 20 ~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~~~~--------~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~ 90 (300)
T 2qc5_A 20 SGPYGITSSEDG-KVWFTQHKANKISSLDQSGRIKEFE--------VPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSK 90 (300)
T ss_dssp CCEEEEEECTTS-CEEEEETTTTEEEEECTTSCEEEEE--------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CCcceeeECCCC-CEEEEcCCCCeEEEECCCCceEEEE--------CCCCCCcceeEEECCCCCEEEEecCCCeEEEECC
Confidence 456788888888 4788775667888887654432211 123457899999999999999997 58999999
Q ss_pred CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCccc
Q psy4832 207 EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPA 286 (770)
Q Consensus 207 ~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~ 286 (770)
+|++..+.. ......|.+|++++ +|.|||++..++.|.++ ++++.+..+.-.
T Consensus 91 ~g~~~~~~~--~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~-------~~~g~~~~~~~~------------------ 142 (300)
T 2qc5_A 91 KGGFTEYPL--PQPDSGPYGITEGL-NGDIWFTQLNGDRIGKL-------TADGTIYEYDLP------------------ 142 (300)
T ss_dssp TSCEEEEEC--SSTTCCEEEEEECS-TTCEEEEETTTTEEEEE-------CTTSCEEEEECS------------------
T ss_pred CCCeEEecC--CCCCCCCccceECC-CCCEEEEccCCCeEEEE-------CCCCCEEEccCC------------------
Confidence 988765432 12346799999996 89999999988999999 556666544311
Q ss_pred ccccccCcceEEEccCCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC
Q psy4832 287 LAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD 364 (770)
Q Consensus 287 ~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g 364 (770)
.....|.+|+++++|+|||++..+ |.+++++|.+..+... ..+..|.+|++++ +|
T Consensus 143 --~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~--------------------~~~~~~~~i~~d~-~g 199 (300)
T 2qc5_A 143 --NKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLP--------------------TNAAAPVGITSGN-DG 199 (300)
T ss_dssp --STTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECS--------------------STTCCEEEEEECT-TS
T ss_pred --CCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcEEEeeCC--------------------CCCCCcceEEECC-CC
Confidence 113479999999999999999754 9999998887764321 1245799999999 99
Q ss_pred eEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEE
Q psy4832 365 SLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLY 442 (770)
Q Consensus 365 ~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~ly 442 (770)
+|||++ ++.|.+++++|.+..+... ..+..|.+|+++++|+||
T Consensus 200 ~l~v~~~~~~~i~~~~~~g~~~~~~~~-----------------------------------~~~~~~~~i~~d~~g~l~ 244 (300)
T 2qc5_A 200 ALWFVEIMGNKIGRITTTGEISEYDIP-----------------------------------TPNARPHAITAGKNSEIW 244 (300)
T ss_dssp SEEEEETTTTEEEEECTTCCEEEEECS-----------------------------------STTCCEEEEEECSTTCEE
T ss_pred CEEEEccCCCEEEEEcCCCcEEEEECC-----------------------------------CCCCCceEEEECCCCCEE
Confidence 999999 4789999998876655311 113569999999999999
Q ss_pred EEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCc
Q psy4832 443 IADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSL 522 (770)
Q Consensus 443 VaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~ 522 (770)
|++..+++ |.+++++|++..+.-.. ....|.+|+++++|.||+++. +
T Consensus 245 v~~~~~~~---i~~~~~~g~~~~~~~~~----------------------------~~~~~~~i~~~~~g~l~v~~~-~- 291 (300)
T 2qc5_A 245 FTEWGANQ---IGRITNDNTIQEYQLQT----------------------------ENAEPHGITFGKDGSVWFALK-C- 291 (300)
T ss_dssp EEETTTTE---EEEECTTSCEEEEECCS----------------------------TTCCCCCEEECTTSCEEEECS-S-
T ss_pred EeccCCCe---EEEECCCCcEEEEECCc----------------------------cCCccceeEeCCCCCEEEEcc-C-
Confidence 99987764 67888888876553110 134589999999999999998 6
Q ss_pred eEEeeec
Q psy4832 523 HILALQH 529 (770)
Q Consensus 523 ~I~~i~~ 529 (770)
+|.++.+
T Consensus 292 ~i~~~~p 298 (300)
T 2qc5_A 292 KIGKLNL 298 (300)
T ss_dssp EEEEEEE
T ss_pred ceEEeCC
Confidence 8888765
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.6e-21 Score=210.44 Aligned_cols=264 Identities=15% Similarity=0.141 Sum_probs=193.2
Q ss_pred eeeecCCCeEEECCCccEEecccCCCeEEEEeccC-ccCCccCCCCCcccccccccCceEEEEcCCCC-EEEEeC--c-e
Q psy4832 126 HHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTG-LQRPLVCKDCDGVARDARLLTPVALTSGPDGS-LYVGDF--N-L 200 (770)
Q Consensus 126 ~~~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G-~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~-lyv~d~--~-~ 200 (770)
..|+.|.+++.+.+|. +|+++..++.|.++...+ ....+ ......|. ++++++|. ||+++. + +
T Consensus 128 a~~~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~----------~~~~~~~~-ia~~~~g~~l~~~d~~~~~~ 195 (409)
T 3hrp_A 128 AKFKYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV----------HPGFKGGK-PAVTKDKQRVYSIGWEGTHT 195 (409)
T ss_dssp CCCCCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE----------EETCCBCB-CEECTTSSEEEEEBSSTTCE
T ss_pred cccCCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe----------eccCCCCc-eeEecCCCcEEEEecCCCce
Confidence 3788999999999995 899986778888887653 32211 11134577 99999886 888887 2 8
Q ss_pred EEEEcCCCcE-EEEeccC-cccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCC
Q psy4832 201 VRRLTPEGNV-FTVLQLS-ATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDET 278 (770)
Q Consensus 201 I~~i~~~G~v-~~~~~~~-~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~ 278 (770)
|.++++++.. ...++.. ......|.+++++|.++.||+++. +++|++++.. .+....+++.+..
T Consensus 196 I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~------~~~~~~~~~~~~~------- 261 (409)
T 3hrp_A 196 VYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-NKNFGRFNVK------TQEVTLIKQLELS------- 261 (409)
T ss_dssp EEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT-TCEEEEEETT------TCCEEEEEECCCC-------
T ss_pred EEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECC------CCCEEEEeccccc-------
Confidence 9999876432 2233211 225678999999988899999886 6899999531 2445555543221
Q ss_pred CcCCCcccccccccCcc-eEEEcc-CCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCc
Q psy4832 279 NCGDNGPALAAKLSHPK-GLAIKA-DKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWP 354 (770)
Q Consensus 279 ~~g~~g~~~~a~l~~P~-gIavd~-~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P 354 (770)
+.. -..|. +|++++ +|.|||+|..+ |++++.+|.+.+++|...... . .......++|.+|
T Consensus 262 --g~~-------~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g------~-~dg~~~~~~~~~P 325 (409)
T 3hrp_A 262 --GSL-------GTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKT------V-QDGLREEALFAQP 325 (409)
T ss_dssp --SCC-------CCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCS------C-BCEEGGGCBCSSE
T ss_pred --CCC-------CCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCC------c-CCCcccccEeCCC
Confidence 100 12377 999999 68999999876 999999999999988752111 1 1235667789999
Q ss_pred ceEEEeCCCCeEEEEeC---CEEEEEc-CCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCe
Q psy4832 355 TGLALSPLDDSLHFIDD---RVIFKLT-NDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSL 430 (770)
Q Consensus 355 ~gla~d~~~g~lyv~D~---~~I~~i~-~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P 430 (770)
.+|++++ +|+|||+|. ++|++++ ++|.+.+++|.+...... + ..+..+.|..|
T Consensus 326 ~gia~d~-dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~--~--------------------g~~~~~~~~~P 382 (409)
T 3hrp_A 326 NGMTVDE-DGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQI--D--------------------GTPLEATFNYP 382 (409)
T ss_dssp EEEEECT-TCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCC--C--------------------BSTTTCCBSSE
T ss_pred eEEEEeC-CCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcC--C--------------------CChhceEeCCc
Confidence 9999999 999999995 7999999 899999999875432111 1 12355678999
Q ss_pred eEEEEcCCCCEEEEeCCCCceeeE
Q psy4832 431 TALAFSPTGDLYIADIDARKVNAL 454 (770)
Q Consensus 431 ~giavd~~G~lyVaD~~~~ri~~i 454 (770)
.+|+++++|+|||||+.++||++|
T Consensus 383 ~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 383 YDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp EEEEECSSSEEEEEESTTCEEEEE
T ss_pred eEEEEcCCCCEEEEECCCCeEEEE
Confidence 999999999999999999975443
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-21 Score=198.60 Aligned_cols=235 Identities=19% Similarity=0.298 Sum_probs=169.2
Q ss_pred CceEEEEcCCCCEEE-EeC--ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 181 TPVALTSGPDGSLYV-GDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 181 ~P~~la~~~dG~lyv-~d~--~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
.|.+|+++++|+||| ++. +.|.++++++.....+. ...+..|.+|++++ +|+|||++. +++|+++ +
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~-------d 93 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP--FNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTL-------A 93 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC--CCSCCSCCCEEECT-TCCEEEEET-TTEEEEE-------C
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe--eCCcCCcceeEECC-CCCEEEEcC-CCEEEEE-------e
Confidence 999999999999999 865 58999998766555442 33567899999997 788999998 7899999 4
Q ss_pred CCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCc
Q psy4832 258 PSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIW 335 (770)
Q Consensus 258 ~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~ 335 (770)
+++........ ..+..|.+|+++++|+|||++..+ |.+++..........
T Consensus 94 ~~~~~~~~~~~--------------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-------- 145 (270)
T 1rwi_B 94 AGSNNQTVLPF--------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP-------- 145 (270)
T ss_dssp TTCSCCEECCC--------------------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC--------
T ss_pred CCCceEeeeec--------------------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec--------
Confidence 44432221110 114579999999999999998654 888865432111110
Q ss_pred CCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccc
Q psy4832 336 SPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKS 413 (770)
Q Consensus 336 ~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (770)
...+..|.+|++++ +|+|||++ +++|++++.++.......
T Consensus 146 ------------~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~------------------------- 187 (270)
T 1rwi_B 146 ------------FTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLP------------------------- 187 (270)
T ss_dssp ------------CCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECC-------------------------
T ss_pred ------------cccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCceEeec-------------------------
Confidence 11356799999999 89999999 479999998764322210
Q ss_pred cccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcc
Q psy4832 414 TVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETL 493 (770)
Q Consensus 414 ~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~ 493 (770)
...+..|.+|+++++|.|||++..+++ |.++++++.......
T Consensus 188 ----------~~~~~~p~~i~~d~~g~l~v~~~~~~~---v~~~~~~~~~~~~~~------------------------- 229 (270)
T 1rwi_B 188 ----------FTDITAPWGIAVDEAGTVYVTEHNTNQ---VVKLLAGSTTSTVLP------------------------- 229 (270)
T ss_dssp ----------CSSCCSEEEEEECTTCCEEEEETTTSC---EEEECTTCSCCEECC-------------------------
T ss_pred ----------ccCCCCceEEEECCCCCEEEEECCCCc---EEEEcCCCCcceeec-------------------------
Confidence 012356999999999999999998875 677787765322210
Q ss_pred cccceecCCeeEEEEcCCCcEEEEcCCCceEEeeecCCcc
Q psy4832 494 LTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYLPT 533 (770)
Q Consensus 494 ~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~~~~ 533 (770)
...+..|.+|+++++|.|||+|.++++|+.+....+.
T Consensus 230 ---~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 230 ---FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp ---CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ---cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 0124679999999999999999999999998776543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-19 Score=191.12 Aligned_cols=236 Identities=17% Similarity=0.238 Sum_probs=184.0
Q ss_pred ccccCceEEEEcCCCCEEEEeC--ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCC
Q psy4832 177 ARLLTPVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLES 254 (770)
Q Consensus 177 ~~l~~P~~la~~~dG~lyv~d~--~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~ 254 (770)
..+..|.+|+++++|+|||++. +.|.+++++|++..+. . ...+..|.+|++++ +|.||+++..+++|.++
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~-~-~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~----- 88 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFE-V-PTPDAKVMCLIVSS-LGDIWFTENGANKIGKL----- 88 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEE-C-SSTTCCEEEEEECT-TSCEEEEETTTTEEEEE-----
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEE-C-CCCCCcceeEEECC-CCCEEEEecCCCeEEEE-----
Confidence 3467899999999999999996 6999999988777642 2 23457899999996 89999999988999999
Q ss_pred ccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCCCcEEEeecCCCCC
Q psy4832 255 VADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHH 332 (770)
Q Consensus 255 ~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~ 332 (770)
++++.+..+.... ....|.+|+++++|+|||++..+ |.+++++|.+..+....
T Consensus 89 --d~~g~~~~~~~~~--------------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~--- 143 (300)
T 2qc5_A 89 --SKKGGFTEYPLPQ--------------------PDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPN--- 143 (300)
T ss_dssp --CTTSCEEEEECSS--------------------TTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSS---
T ss_pred --CCCCCeEEecCCC--------------------CCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCC---
Confidence 5566665443210 12468999999999999999743 99999888877543110
Q ss_pred CCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCcccccccccc
Q psy4832 333 NIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKT 410 (770)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~ 410 (770)
....|.+|++++ +|+|||++ ++.|++++++|++..+.. +
T Consensus 144 -----------------~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~-~-------------------- 184 (300)
T 2qc5_A 144 -----------------KGSYPAFITLGS-DNALWFTENQNNSIGRITNTGKLEEYPL-P-------------------- 184 (300)
T ss_dssp -----------------TTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEEEC-S--------------------
T ss_pred -----------------CCCCceeEEECC-CCCEEEEecCCCeEEEECCCCcEEEeeC-C--------------------
Confidence 244799999999 89999999 579999999888765431 1
Q ss_pred ccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCcc
Q psy4832 411 KKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSK 490 (770)
Q Consensus 411 ~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~ 490 (770)
..+..|.+|+++++|+|||++..+++ |.+++++|.+..+...
T Consensus 185 --------------~~~~~~~~i~~d~~g~l~v~~~~~~~---i~~~~~~g~~~~~~~~--------------------- 226 (300)
T 2qc5_A 185 --------------TNAAAPVGITSGNDGALWFVEIMGNK---IGRITTTGEISEYDIP--------------------- 226 (300)
T ss_dssp --------------STTCCEEEEEECTTSSEEEEETTTTE---EEEECTTCCEEEEECS---------------------
T ss_pred --------------CCCCCcceEEECCCCCEEEEccCCCE---EEEEcCCCcEEEEECC---------------------
Confidence 11356999999999999999988764 6778888877655311
Q ss_pred CcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeec
Q psy4832 491 ETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQH 529 (770)
Q Consensus 491 d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~ 529 (770)
..+..|.+|+++++|.|||++..+++|.++..
T Consensus 227 -------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 227 -------TPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp -------STTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred -------CCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 11456999999999999999999889998866
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-21 Score=209.42 Aligned_cols=229 Identities=18% Similarity=0.236 Sum_probs=174.4
Q ss_pred eEEEEcCCCCEEEEeCceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCc-
Q psy4832 183 VALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSIN- 261 (770)
Q Consensus 183 ~~la~~~dG~lyv~d~~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~- 261 (770)
...+.++++.|+++..+.|++++++|...+.+ ...+..|.+|++++.++.|||+|..+++|++++ ++|.
T Consensus 37 ~C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~---~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~-------~~g~~ 106 (349)
T 3v64_C 37 SCKALGPEPVLLFANRIDIRQVLPHRSEYTLL---LNNLENAIALDFHHRRELVFWSDVTLDRILRAN-------LNGSN 106 (349)
T ss_dssp CEEESSSCCEEEEECBSCEEEECTTSCCEEEE---ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEE-------TTSCS
T ss_pred cccccccCceeEeecccceEEEeCCCCeeEEe---ecCCCceEEEEEeccccEEEEEeccCCceEEEe-------cCCCC
Confidence 45566778889999999999999998655444 346778999999988999999999999999995 3332
Q ss_pred EEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCC
Q psy4832 262 WEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPF 338 (770)
Q Consensus 262 ~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~ 338 (770)
.+.+.. ..+..|.|||+|+ .|+||++|..+ |.+++.+|...+.+..
T Consensus 107 ~~~~~~---------------------~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~---------- 155 (349)
T 3v64_C 107 VEEVVS---------------------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW---------- 155 (349)
T ss_dssp CEEEEC---------------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----------
T ss_pred ceEEEe---------------------CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe----------
Confidence 233322 1245799999996 78899999875 9999998865443322
Q ss_pred ccCCCcccccccccCcceEEEeCCCCeEEEEe--C-CEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccc
Q psy4832 339 NCHRSFPASTAQLQWPTGLALSPLDDSLHFID--D-RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTV 415 (770)
Q Consensus 339 ~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~-~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (770)
..+..|.+|++||.++.|||+| + ++|++++.+|.......
T Consensus 156 ----------~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~--------------------------- 198 (349)
T 3v64_C 156 ----------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA--------------------------- 198 (349)
T ss_dssp ----------TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC---------------------------
T ss_pred ----------CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE---------------------------
Confidence 1367899999998788999999 3 78999999986443331
Q ss_pred cCCcccccccccCCeeEEEEcC-CCCEEEEeCCCCceeeEEEEcCCCcEE-EeecCccCCCCCcCCCCCcccccCccCcc
Q psy4832 416 QDDSVRASNMDLGSLTALAFSP-TGDLYIADIDARKVNALRVIDSTGRMF-DFAGRWQSDKKNCNTTNCAEFEKNSKETL 493 (770)
Q Consensus 416 ~~~~~~a~~~~l~~P~giavd~-~G~lyVaD~~~~ri~~i~~i~~~G~i~-~~aG~~~~~~~~~~~~~~~~~~~~~~d~~ 493 (770)
...+..|+|||+|+ ++.|||+|+.+++ |.+++.+|... ++..
T Consensus 199 --------~~~~~~PnGla~d~~~~~lY~aD~~~~~---I~~~~~dG~~~~~~~~------------------------- 242 (349)
T 3v64_C 199 --------DTHLFWPNGLTIDYAGRRMYWVDAKHHV---IERANLDGSHRKAVIS------------------------- 242 (349)
T ss_dssp --------CSSCSCEEEEEEETTTTEEEEEETTTTE---EEEEETTSCSCEEEEC-------------------------
T ss_pred --------ECCCCCcceEEEeCCCCEEEEEECCCCE---EEEEeCCCCceEEEEe-------------------------
Confidence 11256799999996 6779999999875 67777777422 2221
Q ss_pred cccceecCCeeEEEEcCCCcEEEEcCCCceEEeeecC
Q psy4832 494 LTSTARFTSISALSVSPDGVVNVADQGSLHILALQHY 530 (770)
Q Consensus 494 ~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~ 530 (770)
..+..|.||+++ ++.||++|.++++|.++.+.
T Consensus 243 ----~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~ 274 (349)
T 3v64_C 243 ----QGLPHPFAITVF-EDSLYWTDWHTKSINSANKF 274 (349)
T ss_dssp ----SSCSSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred ----CCCCCceEEEEE-CCEEEEecCCCCeEEEEEcc
Confidence 115689999995 67999999999999999753
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.8e-21 Score=209.61 Aligned_cols=229 Identities=18% Similarity=0.228 Sum_probs=173.9
Q ss_pred eEEEEcCCCCEEEEeCceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCc-
Q psy4832 183 VALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSIN- 261 (770)
Q Consensus 183 ~~la~~~dG~lyv~d~~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~- 261 (770)
...+.++++.|++++.+.|+++++++...+.+ ...+..|.+|++++.++.|||+|..+++|++++ ++|.
T Consensus 80 ~C~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~---~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~-------~~g~~ 149 (386)
T 3v65_B 80 SCKALGPEPVLLFANRIDIRQVLPHRSEYTLL---LNNLENAIALDFHHRRELVFWSDVTLDRILRAN-------LNGSN 149 (386)
T ss_dssp CEEECSSCCEEEEECBSCEEEECTTSCCCEEE---ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEE-------TTSCC
T ss_pred eECCccccceeEeecCccceeeccCCCcEEEE---ecCCCccEEEEEecCCCeEEEEeCCCCcEEEEe-------cCCCC
Confidence 34556678889999999999999987654443 246778999999988999999999999999994 4443
Q ss_pred EEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCC
Q psy4832 262 WEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPF 338 (770)
Q Consensus 262 ~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~ 338 (770)
.+.+... .+..|.|||+|+ .|+||++|..+ |.+++.+|...+.+..
T Consensus 150 ~~~~~~~---------------------~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~---------- 198 (386)
T 3v65_B 150 VEEVVST---------------------GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW---------- 198 (386)
T ss_dssp EEEEECS---------------------SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC----------
T ss_pred cEEEEeC---------------------CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec----------
Confidence 3344321 245799999996 78899999876 9999998854433321
Q ss_pred ccCCCcccccccccCcceEEEeCCCCeEEEEe--C-CEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccc
Q psy4832 339 NCHRSFPASTAQLQWPTGLALSPLDDSLHFID--D-RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTV 415 (770)
Q Consensus 339 ~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~-~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (770)
..|..|.+|++||.++.|||+| + ++|++++.+|....+...
T Consensus 199 ----------~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-------------------------- 242 (386)
T 3v65_B 199 ----------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-------------------------- 242 (386)
T ss_dssp ----------SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--------------------------
T ss_pred ----------CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE--------------------------
Confidence 1367899999998788999999 3 789999999864333311
Q ss_pred cCCcccccccccCCeeEEEEcC-CCCEEEEeCCCCceeeEEEEcCCCcEE-EeecCccCCCCCcCCCCCcccccCccCcc
Q psy4832 416 QDDSVRASNMDLGSLTALAFSP-TGDLYIADIDARKVNALRVIDSTGRMF-DFAGRWQSDKKNCNTTNCAEFEKNSKETL 493 (770)
Q Consensus 416 ~~~~~~a~~~~l~~P~giavd~-~G~lyVaD~~~~ri~~i~~i~~~G~i~-~~aG~~~~~~~~~~~~~~~~~~~~~~d~~ 493 (770)
..+..|+|||+|+ ++.|||+|..+++ |++++.+|... ++..
T Consensus 243 ---------~~~~~PnGlavd~~~~~lY~aD~~~~~---I~~~d~dG~~~~~~~~------------------------- 285 (386)
T 3v65_B 243 ---------THLFWPNGLTIDYAGRRMYWVDAKHHV---IERANLDGSHRKAVIS------------------------- 285 (386)
T ss_dssp ---------SSCSCEEEEEEEGGGTEEEEEETTTTE---EEEECTTSCSCEEEEC-------------------------
T ss_pred ---------CCCCCeeeEEEeCCCCEEEEEECCCCE---EEEEeCCCCeeEEEEE-------------------------
Confidence 1256799999996 6789999999875 77788777422 2221
Q ss_pred cccceecCCeeEEEEcCCCcEEEEcCCCceEEeeecC
Q psy4832 494 LTSTARFTSISALSVSPDGVVNVADQGSLHILALQHY 530 (770)
Q Consensus 494 ~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~ 530 (770)
..+..|.||+++ ++.|||+|.++++|+++.+.
T Consensus 286 ----~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~ 317 (386)
T 3v65_B 286 ----QGLPHPFAITVF-EDSLYWTDWHTKSINSANKF 317 (386)
T ss_dssp ----SSCSSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred ----CCCCCceEEEEE-CCEEEEeeCCCCeEEEEECC
Confidence 115679999994 67999999999999999753
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-21 Score=206.58 Aligned_cols=266 Identities=18% Similarity=0.219 Sum_probs=185.4
Q ss_pred CCCccceeeeeecCCCeEEECCCccEEecccCCC------------------------eEEEEecc-CccCCccCCCCCc
Q psy4832 118 GGWSLDVHHHYNFHEGILQKGDGSSLHLKHEFPR------------------------TVSVVMGT-GLQRPLVCKDCDG 172 (770)
Q Consensus 118 ggw~l~~~~~~~~~~gil~~~dG~~~~~~~~~~~------------------------~i~~v~g~-G~~~~~~~~~~~g 172 (770)
..|.-. ...|..+.|++...+| ++|+++..+. .|.++... |....
T Consensus 14 ~~wp~~-~~~l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-------- 83 (329)
T 3fvz_A 14 LDWPGV-YLLPGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ-------- 83 (329)
T ss_dssp TTCGGG-GCCCSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE--------
T ss_pred cCCchh-ceecCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe--------
Confidence 456432 4567789999999999 5788874442 35555432 33211
Q ss_pred ccccccccCceEEEEcCCCCEEEEeC--ceEEEEcCCCc--EEEEecc------CcccccceeEEEEeCCCCcEEEEeC-
Q psy4832 173 VARDARLLTPVALTSGPDGSLYVGDF--NLVRRLTPEGN--VFTVLQL------SATQVSYQYYLALSPADGHLYISDA- 241 (770)
Q Consensus 173 ~~~~~~l~~P~~la~~~dG~lyv~d~--~~I~~i~~~G~--v~~~~~~------~~~~~~~p~~lav~p~~g~lyvsd~- 241 (770)
......|..|.+|+++++|+|||+|. ++|++++++|+ ....++. ....+..|.+|+++|.++.|||+|.
T Consensus 84 ~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~ 163 (329)
T 3fvz_A 84 SSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY 163 (329)
T ss_dssp EECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS
T ss_pred ccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC
Confidence 11135678999999999999999997 59999999987 3333321 1346778999999987899999997
Q ss_pred CCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccC-CcEEEEeCCC--eEEECC
Q psy4832 242 EKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKAD-KTMFIADGTN--IRVVSP 318 (770)
Q Consensus 242 ~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~-G~lYvaD~~~--Ir~id~ 318 (770)
.+++|+++ +++|.+...++... .+..+....|..|.+|+++++ |+|||+|..+ |+++++
T Consensus 164 ~~~~I~~~-------~~~g~~~~~~~~~g-----------~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~ 225 (329)
T 3fvz_A 164 CNSRIVQF-------SPSGKFVTQWGEES-----------SGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKT 225 (329)
T ss_dssp SCCEEEEE-------CTTSCEEEEECEEC-----------CSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCeEEEE-------cCCCCEEEEeccCC-----------CCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEEC
Confidence 79999999 67787766654321 122234567889999999998 8999999877 999998
Q ss_pred C-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEc-CCCcEEEEecCCCCCC
Q psy4832 319 E-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLT-NDLKVKIVAGIPLHCR 394 (770)
Q Consensus 319 ~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~-~~G~v~~vaG~~~~~~ 394 (770)
+ |++...+....... .... ....| +++++. +|++||+| +++|++++ .+|++....+..
T Consensus 226 ~~G~~~~~~~~~~~~~-----------~~~~-~~~~p-g~~~~~-~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~---- 287 (329)
T 3fvz_A 226 DTKEFVREIKHASFGR-----------NVFA-ISYIP-GFLFAV-NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV---- 287 (329)
T ss_dssp TTCCEEEEECCTTTTT-----------CEEE-EEEET-TEEEEE-ECCCCTTCSCCCCEEEEETTTCCEEEEECCS----
T ss_pred CCCcEEEEEeccccCC-----------Ccce-eeecC-CEEEEe-CCCEEeccCCCcEEEEEEcCCCeEEEEEcCC----
Confidence 7 87766554322110 0000 11134 666665 66777776 46888988 667766555421
Q ss_pred CCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCC
Q psy4832 395 TGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTG 461 (770)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G 461 (770)
...+..|.+|+++++|+|||+|..+++ |++++.+|
T Consensus 288 -----------------------------~~~~~~p~~ia~~~dG~lyvad~~~~~---I~~~~~~~ 322 (329)
T 3fvz_A 288 -----------------------------RKHFDMPHDIVASEDGTVYIGDAHTNT---VWKFTLTE 322 (329)
T ss_dssp -----------------------------SSCCSSEEEEEECTTSEEEEEESSSCC---EEEEEEEE
T ss_pred -----------------------------CCccCCeeEEEECCCCCEEEEECCCCE---EEEEeCCc
Confidence 123577999999999999999999986 55655544
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-19 Score=186.43 Aligned_cols=274 Identities=16% Similarity=0.181 Sum_probs=202.4
Q ss_pred ecCCCeEEECCCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCCEEEEeC--ceEEEEcC
Q psy4832 129 NFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDF--NLVRRLTP 206 (770)
Q Consensus 129 ~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~--~~I~~i~~ 206 (770)
+.|.++..+.+|. +|++....+.|..+...+....+.. ......|.+|+++++|.||+++. +.|.++++
T Consensus 15 ~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~~~~~~~~~--------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 15 TGPYGITVSDKGK-VWITQHKANMISCINLDGKITEYPL--------PTPDAKVMCLTISSDGEVWFTENAANKIGRITK 85 (299)
T ss_dssp CCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEEEEC--------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CCccceEECCCCC-EEEEecCCCcEEEEcCCCCeEEecC--------CcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence 4677888888884 7777645677888766544322110 11236799999999999999986 58999999
Q ss_pred CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCccc
Q psy4832 207 EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPA 286 (770)
Q Consensus 207 ~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~ 286 (770)
+|++..+.. ......|.+|++++ +|.||+++..++.|+++ ++++....+...
T Consensus 86 ~g~~~~~~~--~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~-------d~~g~~~~~~~~------------------ 137 (299)
T 2z2n_A 86 KGIIKEYTL--PNPDSAPYGITEGP-NGDIWFTEMNGNRIGRI-------TDDGKIREYELP------------------ 137 (299)
T ss_dssp TSCEEEEEC--SSTTCCEEEEEECT-TSCEEEEETTTTEEEEE-------CTTCCEEEEECS------------------
T ss_pred CCcEEEEeC--CCcCCCceeeEECC-CCCEEEEecCCceEEEE-------CCCCCEEEecCC------------------
Confidence 988765431 22456899999996 89999999988999999 556666544321
Q ss_pred ccccccCcceEEEccCCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC
Q psy4832 287 LAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD 364 (770)
Q Consensus 287 ~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g 364 (770)
.....|.+|+++++|+||+++... |.+++++|.+..+.... .+..|.+|++++ +|
T Consensus 138 --~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~--------------------~~~~~~~i~~~~-~g 194 (299)
T 2z2n_A 138 --NKGSYPSFITLGSDNALWFTENQNNAIGRITESGDITEFKIPT--------------------PASGPVGITKGN-DD 194 (299)
T ss_dssp --STTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSS--------------------TTCCEEEEEECT-TS
T ss_pred --CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEeeCCC--------------------CCCcceeEEECC-CC
Confidence 113468999999999999998653 99999988877653211 245689999999 89
Q ss_pred eEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEE
Q psy4832 365 SLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLY 442 (770)
Q Consensus 365 ~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~ly 442 (770)
+|||++ .+.|.+++++|++..+... ..+..|.+|+++++|+||
T Consensus 195 ~l~v~~~~~~~i~~~~~~g~~~~~~~~-----------------------------------~~~~~~~~i~~~~~g~l~ 239 (299)
T 2z2n_A 195 ALWFVEIIGNKIGRITTSGEITEFKIP-----------------------------------TPNARPHAITAGAGIDLW 239 (299)
T ss_dssp SEEEEETTTTEEEEECTTCCEEEEECS-----------------------------------STTCCEEEEEECSTTCEE
T ss_pred CEEEEccCCceEEEECCCCcEEEEECC-----------------------------------CCCCCceeEEECCCCCEE
Confidence 999999 5899999998876654211 113469999999999999
Q ss_pred EEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCc
Q psy4832 443 IADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSL 522 (770)
Q Consensus 443 VaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~ 522 (770)
|++..+++ |.+++++|.+..+.... ....|.+|++ ++|.||+++. ++
T Consensus 240 v~~~~~~~---i~~~d~~g~~~~~~~~~----------------------------~~~~~~~i~~-~~g~l~v~~~-~~ 286 (299)
T 2z2n_A 240 FTEWGANK---IGRLTSNNIIEEYPIQI----------------------------KSAEPHGICF-DGETIWFAME-CD 286 (299)
T ss_dssp EEETTTTE---EEEEETTTEEEEEECSS----------------------------SSCCEEEEEE-CSSCEEEEET-TT
T ss_pred EeccCCce---EEEECCCCceEEEeCCC----------------------------CCCccceEEe-cCCCEEEEec-CC
Confidence 99977664 67778888766553111 1346999999 9999999987 46
Q ss_pred eEEeeecC
Q psy4832 523 HILALQHY 530 (770)
Q Consensus 523 ~I~~i~~~ 530 (770)
.|.++.+.
T Consensus 287 ~l~~~~~~ 294 (299)
T 2z2n_A 287 KIGKLTLI 294 (299)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEcC
Confidence 77777553
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.4e-19 Score=183.97 Aligned_cols=235 Identities=15% Similarity=0.215 Sum_probs=181.6
Q ss_pred cccCceEEEEcCCCCEEEEeC--ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCc
Q psy4832 178 RLLTPVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESV 255 (770)
Q Consensus 178 ~l~~P~~la~~~dG~lyv~d~--~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~ 255 (770)
.+..|.+|++|++|+||+++. +.|.+++++|.+..+.. ......|.+|++++ +|.||+++..+++|+++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~--~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~------ 83 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPL--PTPDAKVMCLTISS-DGEVWFTENAANKIGRI------ 83 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEC--SSTTCCEEEEEECT-TSCEEEEETTTTEEEEE------
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecC--CcccCceeeEEECC-CCCEEEeCCCCCeEEEE------
Confidence 456899999999999999996 58999998887765542 12346799999996 89999999988999999
Q ss_pred cCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCCCcEEEeecCCCCCC
Q psy4832 256 ADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHN 333 (770)
Q Consensus 256 ~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~ 333 (770)
++++.+..+... .....|.+|+++++|.|||++... |.+++++|.+..+....
T Consensus 84 -~~~g~~~~~~~~--------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~---- 138 (299)
T 2z2n_A 84 -TKKGIIKEYTLP--------------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPN---- 138 (299)
T ss_dssp -CTTSCEEEEECS--------------------STTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSS----
T ss_pred -CCCCcEEEEeCC--------------------CcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCC----
Confidence 555666554311 013469999999999999998643 99999988877653211
Q ss_pred CcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccc
Q psy4832 334 IWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTK 411 (770)
Q Consensus 334 ~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~ 411 (770)
....|.+|++++ +|+||+++ ++.|++++++|++..+...
T Consensus 139 ----------------~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~---------------------- 179 (299)
T 2z2n_A 139 ----------------KGSYPSFITLGS-DNALWFTENQNNAIGRITESGDITEFKIP---------------------- 179 (299)
T ss_dssp ----------------TTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEECS----------------------
T ss_pred ----------------CCCCCceEEEcC-CCCEEEEeCCCCEEEEEcCCCcEEEeeCC----------------------
Confidence 134689999999 99999998 4799999998877654311
Q ss_pred cccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccC
Q psy4832 412 KSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKE 491 (770)
Q Consensus 412 ~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d 491 (770)
..+..|.+|+++++|.|||++...++ |.+++++|++..+...
T Consensus 180 -------------~~~~~~~~i~~~~~g~l~v~~~~~~~---i~~~~~~g~~~~~~~~---------------------- 221 (299)
T 2z2n_A 180 -------------TPASGPVGITKGNDDALWFVEIIGNK---IGRITTSGEITEFKIP---------------------- 221 (299)
T ss_dssp -------------STTCCEEEEEECTTSSEEEEETTTTE---EEEECTTCCEEEEECS----------------------
T ss_pred -------------CCCCcceeEEECCCCCEEEEccCCce---EEEECCCCcEEEEECC----------------------
Confidence 11345899999999999999987764 6777888876654211
Q ss_pred cccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeec
Q psy4832 492 TLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQH 529 (770)
Q Consensus 492 ~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~ 529 (770)
..+..|.+|+++++|.|||++..+++|.++..
T Consensus 222 ------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 222 ------TPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp ------STTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred ------CCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 11356999999999999999988889988875
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.87 E-value=9.6e-21 Score=209.30 Aligned_cols=227 Identities=17% Similarity=0.204 Sum_probs=170.0
Q ss_pred cCCCCEEEEeCceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCC-----cE
Q psy4832 188 GPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSI-----NW 262 (770)
Q Consensus 188 ~~dG~lyv~d~~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g-----~~ 262 (770)
++...|++++.+.|++++.++...+.+ ...+..|.+|++++.++.|||+|..+++|++++ +++ ..
T Consensus 81 ~~~~~ll~~~~~~I~~i~l~~~~~~~~---~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~-------~~g~~~~~~~ 150 (400)
T 3p5b_L 81 GSIAYLFFTNRHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ-------LDRAHGVSSY 150 (400)
T ss_dssp TTSCEEEEEETTEEEEECTTSCSCEEE---ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEE-------C------CCC
T ss_pred cccceeEEeccceeEEEccCCcceeEe---ccccCcceEEeeeeccCceEEEecCCCeEEEEE-------cccCCCCCcc
Confidence 456678999999999999887643333 246788999999998999999999999999994 333 12
Q ss_pred EEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCc
Q psy4832 263 EVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFN 339 (770)
Q Consensus 263 ~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~ 339 (770)
..++. ..+..|.|||+|. .++||++|..+ |++++.+|...+.+..
T Consensus 151 ~~~~~---------------------~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~----------- 198 (400)
T 3p5b_L 151 DTVIS---------------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR----------- 198 (400)
T ss_dssp EEEEC---------------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-----------
T ss_pred eEEEe---------------------CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-----------
Confidence 23332 2255899999997 78999999876 9999999864433321
Q ss_pred cCCCcccccccccCcceEEEeCCCCeEEEEe---CCEEEEEcCCCcEEEEecCCCCCCCCCCCCcccccccccccccccc
Q psy4832 340 CHRSFPASTAQLQWPTGLALSPLDDSLHFID---DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQ 416 (770)
Q Consensus 340 ~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D---~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (770)
..+..|.+|++||..|.|||+| +++|++++.+|.......
T Consensus 199 ---------~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~---------------------------- 241 (400)
T 3p5b_L 199 ---------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---------------------------- 241 (400)
T ss_dssp ---------CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE----------------------------
T ss_pred ---------CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE----------------------------
Confidence 1366899999999789999999 378999999986433321
Q ss_pred CCcccccccccCCeeEEEEcC-CCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccc
Q psy4832 417 DDSVRASNMDLGSLTALAFSP-TGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLT 495 (770)
Q Consensus 417 ~~~~~a~~~~l~~P~giavd~-~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~ 495 (770)
...+..|+|||+|+ ++.|||+|..+++ |++++.+|........
T Consensus 242 -------~~~l~~P~glavd~~~~~lY~aD~~~~~---I~~~d~dG~~~~~~~~-------------------------- 285 (400)
T 3p5b_L 242 -------TENIQWPNGITLDLLSGRLYWVDSKLHS---ISSIDVNGGNRKTILE-------------------------- 285 (400)
T ss_dssp -------CSSCSCEEEEEEETTTTEEEEEETTTTE---EEEEETTSCCCEEEEE--------------------------
T ss_pred -------ECCCCceEEEEEEeCCCEEEEEECCCCE---EEEEeCCCCccEEEEe--------------------------
Confidence 11256799999996 5679999999875 6777777753222211
Q ss_pred cceecCCeeEEEEcCCCcEEEEcCCCceEEeeecC
Q psy4832 496 STARFTSISALSVSPDGVVNVADQGSLHILALQHY 530 (770)
Q Consensus 496 ~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~ 530 (770)
....+..|.||+++ .+.||++|..+++|+++.+.
T Consensus 286 ~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 286 DEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp CSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESS
T ss_pred CCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcC
Confidence 11236789999995 56899999999999999754
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-20 Score=201.12 Aligned_cols=196 Identities=21% Similarity=0.272 Sum_probs=149.3
Q ss_pred ccccCceEEEEcC-CCCEEEEeC--ceEEEEcCCCcE-EEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEecc
Q psy4832 177 ARLLTPVALTSGP-DGSLYVGDF--NLVRRLTPEGNV-FTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSL 252 (770)
Q Consensus 177 ~~l~~P~~la~~~-dG~lyv~d~--~~I~~i~~~G~v-~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~ 252 (770)
..+..|.+|++|+ ++.|||+|. ++|+|++++|.. ..++ ...+..|.+||+++.+++|||+|..+++|.+++
T Consensus 70 ~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~---~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~-- 144 (349)
T 3v64_C 70 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV---STGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN-- 144 (349)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE--
T ss_pred cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE---eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEc--
Confidence 4567899999996 789999997 599999998764 3443 346778999999988999999999999999994
Q ss_pred CCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC---eEEECCCCcEEEeecC
Q psy4832 253 ESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN---IRVVSPEGIIHTLIGH 328 (770)
Q Consensus 253 ~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~---Ir~id~~G~i~t~~g~ 328 (770)
.+|....+.. ...+..|.+|++|+ +|.||++|..+ |.+++.+|...+.+..
T Consensus 145 -----~dG~~~~~l~--------------------~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~ 199 (349)
T 3v64_C 145 -----LDGAHRKVLL--------------------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD 199 (349)
T ss_dssp -----TTSCSCEEEE--------------------CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC
T ss_pred -----CCCCceEEEE--------------------eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE
Confidence 4554322221 12266899999997 78899999764 9999999855443322
Q ss_pred CCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcE-EEEecCCCCCCCCCCCCccccc
Q psy4832 329 HKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKV-KIVAGIPLHCRTGDKDKRDFKD 405 (770)
Q Consensus 329 ~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v-~~vaG~~~~~~~~~~~~~~~~~ 405 (770)
..+.+|.||++|+.++.|||+| +++|++++.+|.. ++++.
T Consensus 200 --------------------~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~----------------- 242 (349)
T 3v64_C 200 --------------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS----------------- 242 (349)
T ss_dssp --------------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-----------------
T ss_pred --------------------CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe-----------------
Confidence 1377999999998688999999 5899999988753 22221
Q ss_pred cccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEc-CCCc
Q psy4832 406 KQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVID-STGR 462 (770)
Q Consensus 406 ~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~-~~G~ 462 (770)
..+..|.||+++ ++.|||+|+.+++| .+++ .+|+
T Consensus 243 -------------------~~~~~P~giav~-~~~ly~td~~~~~V---~~~~~~~G~ 277 (349)
T 3v64_C 243 -------------------QGLPHPFAITVF-EDSLYWTDWHTKSI---NSANKFTGK 277 (349)
T ss_dssp -------------------SSCSSEEEEEEE-TTEEEEEETTTTEE---EEEETTTCC
T ss_pred -------------------CCCCCceEEEEE-CCEEEEecCCCCeE---EEEEccCCC
Confidence 124679999995 67999999999875 5555 3554
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-20 Score=199.12 Aligned_cols=223 Identities=18% Similarity=0.194 Sum_probs=166.5
Q ss_pred CCCCEEEEeCceEEEEcCCCc---EEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCc--EE
Q psy4832 189 PDGSLYVGDFNLVRRLTPEGN---VFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSIN--WE 263 (770)
Q Consensus 189 ~dG~lyv~d~~~I~~i~~~G~---v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~--~~ 263 (770)
|.-.|+++..+.|++++.++. ...++ ..+..|.+|++++.++.|||+|..+++|++++ ++|. ..
T Consensus 3 ~~p~ll~~~~~~I~~i~l~~~~~~~~~~~----~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~-------~~g~~~~~ 71 (318)
T 3sov_A 3 SAPLLLYANRRDLRLVDATNGKENATIVV----GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE-------FNKTESVQ 71 (318)
T ss_dssp -CCEEEEECEEEEEEEETTCTTSCCEEEE----EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEE-------TTSSSCCC
T ss_pred CccEEEEEccCeEEEEECCCCceEEEEEe----cCCCccEEEEEEeCCCEEEEEECCCCcEEEEE-------ccCCCceE
Confidence 455689998899999999875 23332 35678999999988899999999999999995 3332 11
Q ss_pred EEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCcc
Q psy4832 264 VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNC 340 (770)
Q Consensus 264 ~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~ 340 (770)
.+. ...+..|.|||+|. .|+||++|..+ |.+++.+|...+.+..
T Consensus 72 ~~~---------------------~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~------------ 118 (318)
T 3sov_A 72 NVV---------------------VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW------------ 118 (318)
T ss_dssp EEE---------------------EECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------
T ss_pred EEE---------------------cCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe------------
Confidence 111 12256799999996 78999999876 9999999855443322
Q ss_pred CCCcccccccccCcceEEEeCCCCeEEEEe---CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccC
Q psy4832 341 HRSFPASTAQLQWPTGLALSPLDDSLHFID---DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQD 417 (770)
Q Consensus 341 ~~~~~~~~~~l~~P~gla~d~~~g~lyv~D---~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (770)
..+..|.+|++||.+|.||++| +++|++++.+|........
T Consensus 119 --------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~---------------------------- 162 (318)
T 3sov_A 119 --------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN---------------------------- 162 (318)
T ss_dssp --------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC----------------------------
T ss_pred --------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE----------------------------
Confidence 1367899999998679999999 4799999999864333211
Q ss_pred CcccccccccCCeeEEEEcC-CCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCccccc
Q psy4832 418 DSVRASNMDLGSLTALAFSP-TGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTS 496 (770)
Q Consensus 418 ~~~~a~~~~l~~P~giavd~-~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 496 (770)
..+..|+||++|+ ++.|||+|+.+++ |.+++.+|........
T Consensus 163 -------~~l~~Pnglavd~~~~~lY~aD~~~~~---I~~~d~dG~~~~~~~~--------------------------- 205 (318)
T 3sov_A 163 -------SEIYWPNGLTLDYEEQKLYWADAKLNF---IHKSNLDGTNRQAVVK--------------------------- 205 (318)
T ss_dssp -------SSCSCEEEEEEETTTTEEEEEETTTTE---EEEEETTSCSCEEEEC---------------------------
T ss_pred -------CCCCCccEEEEeccCCEEEEEECCCCE---EEEEcCCCCceEEEec---------------------------
Confidence 1256799999998 6779999999875 6777777642222111
Q ss_pred ceecCCeeEEEEcCCCcEEEEcCCCceEEeeecC
Q psy4832 497 TARFTSISALSVSPDGVVNVADQGSLHILALQHY 530 (770)
Q Consensus 497 ~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~ 530 (770)
..+..|.||+++ .+.||++|..+++|.++.+.
T Consensus 206 -~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~ 237 (318)
T 3sov_A 206 -GSLPHPFALTLF-EDILYWTDWSTHSILACNKY 237 (318)
T ss_dssp -SCCSCEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred -CCCCCceEEEEe-CCEEEEEecCCCeEEEEECC
Confidence 125789999998 45899999999999999874
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=7.3e-20 Score=195.77 Aligned_cols=220 Identities=17% Similarity=0.209 Sum_probs=164.5
Q ss_pred CEEEEeCceEEEEcCCCc-EEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCc-----EEEE
Q psy4832 192 SLYVGDFNLVRRLTPEGN-VFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSIN-----WEVA 265 (770)
Q Consensus 192 ~lyv~d~~~I~~i~~~G~-v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~-----~~~v 265 (770)
.|+++..+.|++++.++. +..++ ..+..|.++++++.++.|||+|..+++|++++ +++. .+.+
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~----~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~-------~~g~~~~~~~~~~ 71 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLI----PNLRNVVALDTEVASNRIYWSDLSQRMICSTQ-------LDRAHGVSSYDTV 71 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEE----CSCSSEEEEEEETTTTEEEEEETTTTEEEEEE-------C--------CEEE
T ss_pred EEEEECCCeEEEEECCCcceEehh----cCCCceEEEEEEeCCCEEEEEECCCCcEEEEE-------CCCCCCCcccEEE
Confidence 378888889999998864 44443 35788999999988899999999999999994 3331 1122
Q ss_pred ECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC--eEEECCCCcEE-EeecCCCCCCCcCCCccC
Q psy4832 266 VGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVSPEGIIH-TLIGHHKHHNIWSPFNCH 341 (770)
Q Consensus 266 aG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id~~G~i~-t~~g~~~~~~~~~p~~~~ 341 (770)
. ...+..|.|||+|. .++||++|..+ |.+++.+|... +++.
T Consensus 72 ~---------------------~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-------------- 116 (316)
T 1ijq_A 72 I---------------------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-------------- 116 (316)
T ss_dssp E---------------------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE--------------
T ss_pred E---------------------eCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE--------------
Confidence 1 12256899999995 78899999876 99999988543 3331
Q ss_pred CCcccccccccCcceEEEeCCCCeEEEEeC---CEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCC
Q psy4832 342 RSFPASTAQLQWPTGLALSPLDDSLHFIDD---RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDD 418 (770)
Q Consensus 342 ~~~~~~~~~l~~P~gla~d~~~g~lyv~D~---~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (770)
..+..|.+|++||.++.|||+|. ++|++++.+|....+...
T Consensus 117 -------~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~----------------------------- 160 (316)
T 1ijq_A 117 -------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT----------------------------- 160 (316)
T ss_dssp -------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-----------------------------
T ss_pred -------CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE-----------------------------
Confidence 13568999999987889999992 799999999875543321
Q ss_pred cccccccccCCeeEEEEcC-CCCEEEEeCCCCceeeEEEEcCCCcE-EEeecCccCCCCCcCCCCCcccccCccCccccc
Q psy4832 419 SVRASNMDLGSLTALAFSP-TGDLYIADIDARKVNALRVIDSTGRM-FDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTS 496 (770)
Q Consensus 419 ~~~a~~~~l~~P~giavd~-~G~lyVaD~~~~ri~~i~~i~~~G~i-~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 496 (770)
..+..|+||++|+ ++.|||+|..+++ |.+++.+|.. .+++..
T Consensus 161 ------~~~~~P~gla~d~~~~~lY~~D~~~~~---I~~~d~dg~~~~~~~~~--------------------------- 204 (316)
T 1ijq_A 161 ------ENIQWPNGITLDLLSGRLYWVDSKLHS---ISSIDVNGGNRKTILED--------------------------- 204 (316)
T ss_dssp ------SSCSCEEEEEEETTTTEEEEEETTTTE---EEEEETTSCSCEEEEEC---------------------------
T ss_pred ------CCCCCceEEEEeccCCEEEEEECCCCe---EEEEecCCCceEEEeec---------------------------
Confidence 1256799999997 5679999999875 6777877742 222211
Q ss_pred ceecCCeeEEEEcCCCcEEEEcCCCceEEeeecC
Q psy4832 497 TARFTSISALSVSPDGVVNVADQGSLHILALQHY 530 (770)
Q Consensus 497 ~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~ 530 (770)
...+..|.||+++ ++.|||+|.++++|.++.+.
T Consensus 205 ~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 205 EKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp TTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred CCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCC
Confidence 1125679999997 57999999999999999764
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.1e-20 Score=201.46 Aligned_cols=195 Identities=22% Similarity=0.302 Sum_probs=149.4
Q ss_pred ccccCceEEEEcC-CCCEEEEeC--ceEEEEcCCCcEE-EEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEecc
Q psy4832 177 ARLLTPVALTSGP-DGSLYVGDF--NLVRRLTPEGNVF-TVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSL 252 (770)
Q Consensus 177 ~~l~~P~~la~~~-dG~lyv~d~--~~I~~i~~~G~v~-~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~ 252 (770)
..+..|.+|++|+ ++.|||+|. ++|+|++++|... +++ ...+..|.+||+++.++.|||+|..+++|.++
T Consensus 113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~---~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~--- 186 (386)
T 3v65_B 113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV---STGLESPGGLAVDWVHDKLYWTDSGTSRIEVA--- 186 (386)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE---CSSCSCCCCEEEETTTTEEEEEETTTTEEEEC---
T ss_pred cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE---eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEE---
Confidence 4577899999996 788999997 5999999998644 444 34677899999998899999999999999998
Q ss_pred CCccCCCCcEE-EEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC---eEEECCCCcEEEeec
Q psy4832 253 ESVADPSINWE-VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN---IRVVSPEGIIHTLIG 327 (770)
Q Consensus 253 ~~~~~~~g~~~-~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~---Ir~id~~G~i~t~~g 327 (770)
+++|... ++.. ..+..|.+|++|+ +|.||++|..+ |++++++|...+.+.
T Consensus 187 ----~~dg~~~~~l~~---------------------~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~ 241 (386)
T 3v65_B 187 ----NLDGAHRKVLLW---------------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA 241 (386)
T ss_dssp ----BTTSCSCEEEEC---------------------SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred ----eCCCCceEEeec---------------------CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE
Confidence 4555432 2221 2256899999997 67899999765 999999985444332
Q ss_pred CCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcE-EEEecCCCCCCCCCCCCcccc
Q psy4832 328 HHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKV-KIVAGIPLHCRTGDKDKRDFK 404 (770)
Q Consensus 328 ~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v-~~vaG~~~~~~~~~~~~~~~~ 404 (770)
. ..+.+|.||++|+.++.|||+| +++|++++.+|.. ++++.
T Consensus 242 ~--------------------~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~---------------- 285 (386)
T 3v65_B 242 D--------------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS---------------- 285 (386)
T ss_dssp C--------------------SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC----------------
T ss_pred E--------------------CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE----------------
Confidence 2 1367899999997688999999 5899999988753 22221
Q ss_pred ccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEc-CCCc
Q psy4832 405 DKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVID-STGR 462 (770)
Q Consensus 405 ~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~-~~G~ 462 (770)
..+..|.||+++ ++.|||+|+.+++ |.+++ .+|+
T Consensus 286 --------------------~~~~~P~giav~-~~~ly~td~~~~~---V~~~~~~~G~ 320 (386)
T 3v65_B 286 --------------------QGLPHPFAITVF-EDSLYWTDWHTKS---INSANKFTGK 320 (386)
T ss_dssp --------------------SSCSSEEEEEEE-TTEEEEEETTTTE---EEEEETTTCC
T ss_pred --------------------CCCCCceEEEEE-CCEEEEeeCCCCe---EEEEECCCCc
Confidence 124679999994 6789999999986 45555 4564
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-19 Score=193.02 Aligned_cols=196 Identities=18% Similarity=0.211 Sum_probs=146.7
Q ss_pred cccCceEEEEcC-CCCEEEEeC--ceEEEEcCCC----cE-EEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEE
Q psy4832 178 RLLTPVALTSGP-DGSLYVGDF--NLVRRLTPEG----NV-FTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRV 249 (770)
Q Consensus 178 ~l~~P~~la~~~-dG~lyv~d~--~~I~~i~~~G----~v-~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i 249 (770)
.+..|.++++|+ ++.|||+|. ++|.+++++| .. .+++ ...+..|.+||+++.+++|||+|..+++|.++
T Consensus 28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~---~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~ 104 (316)
T 1ijq_A 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 104 (316)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE---CSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE---eCCCCCcCEEEEeecCCeEEEEECCCCEEEEE
Confidence 477899999998 578999997 5999999887 32 3333 34677899999998789999999999999999
Q ss_pred eccCCccCCCCcE-EEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC---eEEECCCCcEEE
Q psy4832 250 LSLESVADPSINW-EVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN---IRVVSPEGIIHT 324 (770)
Q Consensus 250 ~~~~~~~~~~g~~-~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~---Ir~id~~G~i~t 324 (770)
+ ++|.. .++.. ..+..|.+|++|+ +|.||++|..+ |.+++++|...+
T Consensus 105 ~-------~~g~~~~~~~~---------------------~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~ 156 (316)
T 1ijq_A 105 D-------TKGVKRKTLFR---------------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 156 (316)
T ss_dssp E-------TTSSSEEEEEE---------------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred e-------CCCCceEEEEE---------------------CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE
Confidence 4 45542 22221 1256899999997 78899999753 999999986655
Q ss_pred eecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCc-EEEEecCCCCCCCCCCCCc
Q psy4832 325 LIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLK-VKIVAGIPLHCRTGDKDKR 401 (770)
Q Consensus 325 ~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~-v~~vaG~~~~~~~~~~~~~ 401 (770)
.+... .+.+|.||++|+.++.|||+| +++|.+++.+|. .++++..
T Consensus 157 ~~~~~--------------------~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~------------ 204 (316)
T 1ijq_A 157 SLVTE--------------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED------------ 204 (316)
T ss_dssp EEECS--------------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC------------
T ss_pred EEEEC--------------------CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec------------
Confidence 44321 367999999998678999999 579999999875 3333321
Q ss_pred cccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCc
Q psy4832 402 DFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGR 462 (770)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~ 462 (770)
...+..|.||+++ .+.|||+|+.+++ |.++++ +|+
T Consensus 205 ----------------------~~~~~~P~giav~-~~~ly~~d~~~~~---V~~~~~~~g~ 240 (316)
T 1ijq_A 205 ----------------------EKRLAHPFSLAVF-EDKVFWTDIINEA---IFSANRLTGS 240 (316)
T ss_dssp ----------------------TTTTSSEEEEEEE-TTEEEEEETTTTE---EEEEETTTCC
T ss_pred ----------------------CCccCCcEEEEEE-CCEEEEEECCCCe---EEEEeCCCCc
Confidence 0125679999997 5899999999986 556664 554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-19 Score=199.52 Aligned_cols=197 Identities=18% Similarity=0.216 Sum_probs=148.5
Q ss_pred ccccCceEEEEcC-CCCEEEEeC--ceEEEEcCCCc-----EEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEE
Q psy4832 177 ARLLTPVALTSGP-DGSLYVGDF--NLVRRLTPEGN-----VFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILR 248 (770)
Q Consensus 177 ~~l~~P~~la~~~-dG~lyv~d~--~~I~~i~~~G~-----v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~ 248 (770)
..+..|.+|++|+ ++.|||+|. ++|++++++|. ..+++ ...+..|.+||+|+.+++|||+|..+++|.+
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~---~~~~~~p~glavD~~~~~lY~~d~~~~~I~~ 185 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 185 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE---CSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE---eCCCCCcccEEEEecCCceEEEECCCCeEEE
Confidence 4578999999997 788999998 59999998873 34444 3467889999999889999999999999999
Q ss_pred EeccCCccCCCCcEE-EEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC---eEEECCCCcEE
Q psy4832 249 VLSLESVADPSINWE-VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN---IRVVSPEGIIH 323 (770)
Q Consensus 249 i~~~~~~~~~~g~~~-~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~---Ir~id~~G~i~ 323 (770)
+ +++|... +++. ..+..|.+||+|+ .|.||++|.+. |++++.+|...
T Consensus 186 ~-------~~~g~~~~~l~~---------------------~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~ 237 (400)
T 3p5b_L 186 A-------DTKGVKRKTLFR---------------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 237 (400)
T ss_dssp E-------CTTTCSEEEEEE---------------------CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC
T ss_pred E-------eCCCCceEEEEe---------------------CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc
Confidence 9 5565532 2221 1266799999998 78899999653 99999998544
Q ss_pred EeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEE-EEecCCCCCCCCCCCC
Q psy4832 324 TLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVK-IVAGIPLHCRTGDKDK 400 (770)
Q Consensus 324 t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~-~vaG~~~~~~~~~~~~ 400 (770)
+.+.. ..|.+|.||++|+.++.|||+| +++|++++.+|... +++..
T Consensus 238 ~~~~~--------------------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~----------- 286 (400)
T 3p5b_L 238 YSLVT--------------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED----------- 286 (400)
T ss_dssp EEEEC--------------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEEC-----------
T ss_pred EEEEE--------------------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeC-----------
Confidence 33322 1377999999998688999999 58999999988533 33211
Q ss_pred ccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEc-CCCc
Q psy4832 401 RDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVID-STGR 462 (770)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~-~~G~ 462 (770)
...+..|.||+++ .+.|||+|+.+++ |.+++ .+|+
T Consensus 287 -----------------------~~~l~~P~gl~v~-~~~lywtd~~~~~---V~~~~~~~G~ 322 (400)
T 3p5b_L 287 -----------------------EKRLAHPFSLAVF-EDKVFWTDIINEA---IFSANRLTGS 322 (400)
T ss_dssp -----------------------SSTTSSEEEEEEE-TTEEEEEESSSCS---EEEEESSSCC
T ss_pred -----------------------CCCCCCCEEEEEe-CCEEEEecCCCCe---EEEEEcCCCC
Confidence 1235679999995 5689999999987 45555 4564
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=215.61 Aligned_cols=235 Identities=16% Similarity=0.167 Sum_probs=171.3
Q ss_pred EEEcCCCCEEEEeCceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEE
Q psy4832 185 LTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEV 264 (770)
Q Consensus 185 la~~~dG~lyv~d~~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~ 264 (770)
.++++...|+++..+.|++++.++...+.+ ...+..|.+|++++.++.|||+|..+++|+++...+. ...+....
T Consensus 390 ~~~~~~p~Ll~an~~~Ir~i~l~~~~~~~l---~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~--~~~~~~~~ 464 (791)
T 3m0c_C 390 KAVGSIAYLFFTNRHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRA--HGVSSYDT 464 (791)
T ss_dssp EETTSCCEEEEECBSSEEEECTTSCCCEEE---ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------CEE
T ss_pred eecccccccccccccceeEeeccCCcceee---ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCC--CCCcceeE
Confidence 344556678899888999999876533332 2357889999999889999999999999999953210 00012233
Q ss_pred EECCCccccCCCCCCcCCCcccccccccCcceEEEccC-CcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCccC
Q psy4832 265 AVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKAD-KTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCH 341 (770)
Q Consensus 265 vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~-G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~ 341 (770)
++. ..+..|.|||||.. ++|||+|..+ |++++.+|...+++..
T Consensus 465 vi~---------------------~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~------------- 510 (791)
T 3m0c_C 465 VIS---------------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR------------- 510 (791)
T ss_dssp EEC---------------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-------------
T ss_pred EEe---------------------cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-------------
Confidence 332 23668999999974 5899999877 9999999865444322
Q ss_pred CCcccccccccCcceEEEeCCCCeEEEEe---CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCC
Q psy4832 342 RSFPASTAQLQWPTGLALSPLDDSLHFID---DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDD 418 (770)
Q Consensus 342 ~~~~~~~~~l~~P~gla~d~~~g~lyv~D---~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (770)
..|..|.+|||||..|.|||+| .++|++++.+|....++..
T Consensus 511 -------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~----------------------------- 554 (791)
T 3m0c_C 511 -------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT----------------------------- 554 (791)
T ss_dssp -------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-----------------------------
T ss_pred -------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe-----------------------------
Confidence 1366899999999779999999 3789999999875544321
Q ss_pred cccccccccCCeeEEEEcC-CCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccc
Q psy4832 419 SVRASNMDLGSLTALAFSP-TGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTST 497 (770)
Q Consensus 419 ~~~a~~~~l~~P~giavd~-~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 497 (770)
..|..|.|||+|+ .+.|||+|..+++ |++++.+|......... .
T Consensus 555 ------~~l~~P~GLavD~~~~~LYwaD~~~~~---I~~~d~dG~~~~~v~~~--------------------------~ 599 (791)
T 3m0c_C 555 ------ENIQWPNGITLDLLSGRLYWVDSKLHS---ISSIDVNGGNRKTILED--------------------------E 599 (791)
T ss_dssp ------SSCSCEEEEEEETTTTEEEEEETTTTE---EEEEETTSCSCEEEEEC--------------------------T
T ss_pred ------CCCCCceEEEEecCCCeEEEEeCCCCc---EEEEecCCCceEEEecC--------------------------C
Confidence 1256799999995 6789999998875 67778777533322111 1
Q ss_pred eecCCeeEEEEcCCCcEEEEcCCCceEEeeecC
Q psy4832 498 ARFTSISALSVSPDGVVNVADQGSLHILALQHY 530 (770)
Q Consensus 498 ~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~ 530 (770)
..|..|.+|++.. +.|||+|..+++|+++.+.
T Consensus 600 ~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 600 KRLAHPFSLAVFE-DKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp TTTSSEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred CccCCCCEEEEeC-CEEEEEECCCCEEEEEeCC
Confidence 2367899999964 4999999999999999764
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.4e-19 Score=185.30 Aligned_cols=237 Identities=15% Similarity=0.245 Sum_probs=175.8
Q ss_pred eeecCCCeEEECCCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEE-cCCCCEEEEeC---ceEE
Q psy4832 127 HYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTS-GPDGSLYVGDF---NLVR 202 (770)
Q Consensus 127 ~~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~-~~dG~lyv~d~---~~I~ 202 (770)
.+..|.+++...+| .+|+++...+.|..+..+|..... .... ......+..|.+|++ +++|.|||++. ++|+
T Consensus 28 ~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~g~~~~~--~~~~-~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 28 QFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKEGRFKFQ--FGEC-GKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp CBSCEEEEEECTTC-CEEEEEGGGTEEEEECTTSCEEEE--ECCB-SSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred ccCCCceEEECCCC-CEEEEECCCCEEEEECCCCcEEEE--eccc-CCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 46788999999998 488887577888888766543211 0111 112346788999999 58999999994 5999
Q ss_pred EEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCC
Q psy4832 203 RLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGD 282 (770)
Q Consensus 203 ~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~ 282 (770)
+++++|+....+. ...+..|.+|+++| +|+|||++..+++|+++ ++++......+..
T Consensus 104 ~~d~~g~~~~~~~--~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~-------~~~g~~~~~~~~~------------- 160 (286)
T 1q7f_A 104 IYNQYGQFVRKFG--ATILQHPRGVTVDN-KGRIIVVECKVMRVIIF-------DQNGNVLHKFGCS------------- 160 (286)
T ss_dssp EECTTSCEEEEEC--TTTCSCEEEEEECT-TSCEEEEETTTTEEEEE-------CTTSCEEEEEECT-------------
T ss_pred EECCCCcEEEEec--CccCCCceEEEEeC-CCCEEEEECCCCEEEEE-------cCCCCEEEEeCCC-------------
Confidence 9999999877664 33567899999997 78999999999999999 5666654443311
Q ss_pred CcccccccccCcceEEEccCCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEe
Q psy4832 283 NGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS 360 (770)
Q Consensus 283 ~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d 360 (770)
..+..|.+|+++++|+|||++..+ |++++++|.....++.. ..+..|.+|+++
T Consensus 161 ------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~-------------------g~~~~p~~i~~d 215 (286)
T 1q7f_A 161 ------KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGE-------------------GITNYPIGVGIN 215 (286)
T ss_dssp ------TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCT-------------------TTSCSEEEEEEC
T ss_pred ------CccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccC-------------------CccCCCcEEEEC
Confidence 125579999999999999999654 99999988654444321 125689999999
Q ss_pred CCCCeEEEEe--CC-EEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcC
Q psy4832 361 PLDDSLHFID--DR-VIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSP 437 (770)
Q Consensus 361 ~~~g~lyv~D--~~-~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~ 437 (770)
+ +|+|||++ ++ +|.+++++|+........ .....|.+|++++
T Consensus 216 ~-~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~----------------------------------~~~~~~~~i~~~~ 260 (286)
T 1q7f_A 216 S-NGEILIADNHNNFNLTIFTQDGQLISALESK----------------------------------VKHAQCFDVALMD 260 (286)
T ss_dssp T-TCCEEEEECSSSCEEEEECTTSCEEEEEEES----------------------------------SCCSCEEEEEEET
T ss_pred C-CCCEEEEeCCCCEEEEEECCCCCEEEEEccc----------------------------------CCCCcceeEEECC
Confidence 9 99999999 44 999999988744332211 0123589999999
Q ss_pred CCCEEEEeCCCCce
Q psy4832 438 TGDLYIADIDARKV 451 (770)
Q Consensus 438 ~G~lyVaD~~~~ri 451 (770)
+|+|||++. +++|
T Consensus 261 ~g~l~vs~~-~~~v 273 (286)
T 1q7f_A 261 DGSVVLASK-DYRL 273 (286)
T ss_dssp TTEEEEEET-TTEE
T ss_pred CCcEEEECC-CCeE
Confidence 999999986 4553
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=193.86 Aligned_cols=196 Identities=21% Similarity=0.217 Sum_probs=148.2
Q ss_pred ccccCceEEEEcC-CCCEEEEeC--ceEEEEcCCCcE--EEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEec
Q psy4832 177 ARLLTPVALTSGP-DGSLYVGDF--NLVRRLTPEGNV--FTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLS 251 (770)
Q Consensus 177 ~~l~~P~~la~~~-dG~lyv~d~--~~I~~i~~~G~v--~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~ 251 (770)
..+..|.+|++++ ++.||++|. ++|.+++++|.. .+++ ...+..|.+||+++.+++||++|..+++|.+++
T Consensus 32 ~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~---~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~- 107 (318)
T 3sov_A 32 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV---VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSN- 107 (318)
T ss_dssp EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE---EECCSCCCEEEEETTTTEEEEEETTTTEEEEEE-
T ss_pred cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE---cCCCCCccEEEEEcCCCeEEEEECCCCEEEEEE-
Confidence 3567899999998 789999998 599999998762 2333 345778999999988999999999999999994
Q ss_pred cCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCC-C--eEEECCCCcEEEeec
Q psy4832 252 LESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGT-N--IRVVSPEGIIHTLIG 327 (770)
Q Consensus 252 ~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~-~--Ir~id~~G~i~t~~g 327 (770)
++|....+... ..+..|.+|++|+ .|.||++|.. + |.+++.+|...+.+.
T Consensus 108 ------~dG~~~~~l~~--------------------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~ 161 (318)
T 3sov_A 108 ------LDGSLRKVLFW--------------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 161 (318)
T ss_dssp ------TTSCSCEEEEC--------------------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred ------CCCCcEEEEEe--------------------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE
Confidence 55543222211 2256899999997 6889999964 3 999999985444332
Q ss_pred CCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEE-EEecCCCCCCCCCCCCcccc
Q psy4832 328 HHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVK-IVAGIPLHCRTGDKDKRDFK 404 (770)
Q Consensus 328 ~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~-~vaG~~~~~~~~~~~~~~~~ 404 (770)
. ..+.+|.||++|+.++.|||+| +++|++++.+|... +++.
T Consensus 162 ~--------------------~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~---------------- 205 (318)
T 3sov_A 162 N--------------------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK---------------- 205 (318)
T ss_dssp C--------------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----------------
T ss_pred E--------------------CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec----------------
Confidence 2 1377999999998688999999 58999999987532 3321
Q ss_pred ccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCc
Q psy4832 405 DKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGR 462 (770)
Q Consensus 405 ~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~ 462 (770)
..+..|.||+++ .+.|||+|+.+++ |.++++ +|+
T Consensus 206 --------------------~~~~~P~glav~-~~~lywtd~~~~~---V~~~~~~~G~ 240 (318)
T 3sov_A 206 --------------------GSLPHPFALTLF-EDILYWTDWSTHS---ILACNKYTGE 240 (318)
T ss_dssp --------------------SCCSCEEEEEEE-TTEEEEEETTTTE---EEEEETTTCC
T ss_pred --------------------CCCCCceEEEEe-CCEEEEEecCCCe---EEEEECCCCC
Confidence 124679999998 4689999999986 555565 554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-19 Score=185.62 Aligned_cols=220 Identities=18% Similarity=0.197 Sum_probs=160.0
Q ss_pred CEEEEeCceEEEEcCCCcEEE------EeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCc-EEE
Q psy4832 192 SLYVGDFNLVRRLTPEGNVFT------VLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSIN-WEV 264 (770)
Q Consensus 192 ~lyv~d~~~I~~i~~~G~v~~------~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~-~~~ 264 (770)
.||+++.++|++++.+|...+ ++ .....+|.++++++.++.|||+|..+++|.+++ +++. ...
T Consensus 3 ~l~~~~~~~I~~~~~~g~~~~~~~~~~~~---~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~-------~~g~~~~~ 72 (267)
T 1npe_A 3 HLLFAQTGKIERLPLERNTMKKTEAKAFL---HIPAKVIIGLAFDCVDKVVYWTDISEPSIGRAS-------LHGGEPTT 72 (267)
T ss_dssp EEEEEEEEEEEEEEESSSCBCGGGCEEEE---EEEEEEEEEEEEETTTTEEEEEETTTTEEEEEE-------SSSCCCEE
T ss_pred EEEEEcCCeEEEEEecCcccccccceeee---cCCCCcEEEEEEecCCCEEEEEECCCCEEEEEe-------cCCCCcEE
Confidence 478888889999998876432 22 123467999999987899999999999999995 3333 222
Q ss_pred EECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCccC
Q psy4832 265 AVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCH 341 (770)
Q Consensus 265 vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~ 341 (770)
+.. ..+..|.+|++|+ .+.|||+|..+ |.+++.+|.....+..
T Consensus 73 ~~~---------------------~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~------------- 118 (267)
T 1npe_A 73 IIR---------------------QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD------------- 118 (267)
T ss_dssp EEC---------------------TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------------
T ss_pred EEE---------------------CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE-------------
Confidence 221 1245799999998 57899999866 9999888743222211
Q ss_pred CCcccccccccCcceEEEeCCCCeEEEEe----CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccC
Q psy4832 342 RSFPASTAQLQWPTGLALSPLDDSLHFID----DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQD 417 (770)
Q Consensus 342 ~~~~~~~~~l~~P~gla~d~~~g~lyv~D----~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (770)
..+..|.+|+++|.++.|||+| +++|++++.+|....+...
T Consensus 119 -------~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~---------------------------- 163 (267)
T 1npe_A 119 -------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ---------------------------- 163 (267)
T ss_dssp -------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC----------------------------
T ss_pred -------CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEE----------------------------
Confidence 1256799999999668999999 3589999988754322210
Q ss_pred CcccccccccCCeeEEEEcCC-CCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCccccc
Q psy4832 418 DSVRASNMDLGSLTALAFSPT-GDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTS 496 (770)
Q Consensus 418 ~~~~a~~~~l~~P~giavd~~-G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 496 (770)
..+..|.+|++|++ +.|||+|..+++ |.+++.+|.......
T Consensus 164 -------~~~~~P~gia~d~~~~~lyv~d~~~~~---I~~~~~~g~~~~~~~---------------------------- 205 (267)
T 1npe_A 164 -------DNLGLPNGLTFDAFSSQLCWVDAGTHR---AECLNPAQPGRRKVL---------------------------- 205 (267)
T ss_dssp -------TTCSCEEEEEEETTTTEEEEEETTTTE---EEEEETTEEEEEEEE----------------------------
T ss_pred -------CCCCCCcEEEEcCCCCEEEEEECCCCE---EEEEecCCCceEEEe----------------------------
Confidence 12457999999996 569999999875 677887764322110
Q ss_pred ceecCCeeEEEEcCCCcEEEEcCCCceEEeeecC
Q psy4832 497 TARFTSISALSVSPDGVVNVADQGSLHILALQHY 530 (770)
Q Consensus 497 ~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~ 530 (770)
..+..|.+|+++ ++.|||+|.++++|+++...
T Consensus 206 -~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 206 -EGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp -ECCCSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred -cCCCCceEEEEe-CCEEEEEECCCCeEEEEeCC
Confidence 014569999998 68999999999999888764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=8.5e-19 Score=182.40 Aligned_cols=196 Identities=17% Similarity=0.226 Sum_probs=146.4
Q ss_pred ccCceEEEEcC-CCCEEEEeC--ceEEEEcCCCcEE-EEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCC
Q psy4832 179 LLTPVALTSGP-DGSLYVGDF--NLVRRLTPEGNVF-TVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLES 254 (770)
Q Consensus 179 l~~P~~la~~~-dG~lyv~d~--~~I~~i~~~G~v~-~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~ 254 (770)
+..|.++++|+ ++.|||+|. ++|.+++++|... .++ ...+..|.+|++++.++.|||+|..+++|.+++
T Consensus 35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~---~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~---- 107 (267)
T 1npe_A 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII---RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK---- 107 (267)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE---CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEE----
T ss_pred CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE---ECCCCCccEEEEEecCCeEEEEECCCCEEEEEE----
Confidence 46789999998 678999997 5999999988643 333 345678999999987899999999999999994
Q ss_pred ccCCCCcE-EEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCC--C--eEEECCCCcEEEeecC
Q psy4832 255 VADPSINW-EVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGT--N--IRVVSPEGIIHTLIGH 328 (770)
Q Consensus 255 ~~~~~g~~-~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~--~--Ir~id~~G~i~t~~g~ 328 (770)
.+|.. ..+.. ..+..|.+|++|+ +|.|||+|.. + |.+++.+|.....+..
T Consensus 108 ---~~g~~~~~~~~---------------------~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~ 163 (267)
T 1npe_A 108 ---MDGTQRRVLFD---------------------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ 163 (267)
T ss_dssp ---TTSCSCEEEEC---------------------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC
T ss_pred ---cCCCCEEEEEE---------------------CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEE
Confidence 44432 22221 1145799999999 6889999975 2 8888888754333221
Q ss_pred CCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEE-EEecCCCCCCCCCCCCccccc
Q psy4832 329 HKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVK-IVAGIPLHCRTGDKDKRDFKD 405 (770)
Q Consensus 329 ~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~-~vaG~~~~~~~~~~~~~~~~~ 405 (770)
..+.+|.+|++++.++.|||+| +++|.+++.+|... .+.
T Consensus 164 --------------------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~------------------ 205 (267)
T 1npe_A 164 --------------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL------------------ 205 (267)
T ss_dssp --------------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE------------------
T ss_pred --------------------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe------------------
Confidence 1356899999998457899999 58999999887532 222
Q ss_pred cccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCcEEEe
Q psy4832 406 KQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGRMFDF 466 (770)
Q Consensus 406 ~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~i~~~ 466 (770)
..+..|.+|+++ ++.|||++..+++ |.++++ +|++...
T Consensus 206 -------------------~~~~~P~gi~~d-~~~lyva~~~~~~---v~~~d~~~g~~~~~ 244 (267)
T 1npe_A 206 -------------------EGLQYPFAVTSY-GKNLYYTDWKTNS---VIAMDLAISKEMDT 244 (267)
T ss_dssp -------------------ECCCSEEEEEEE-TTEEEEEETTTTE---EEEEETTTTEEEEE
T ss_pred -------------------cCCCCceEEEEe-CCEEEEEECCCCe---EEEEeCCCCCceEE
Confidence 013569999998 6889999999875 677887 4765443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-19 Score=210.03 Aligned_cols=198 Identities=18% Similarity=0.200 Sum_probs=148.6
Q ss_pred ccccCceEEEEcC-CCCEEEEeC--ceEEEEcCCCc-----EEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEE
Q psy4832 177 ARLLTPVALTSGP-DGSLYVGDF--NLVRRLTPEGN-----VFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILR 248 (770)
Q Consensus 177 ~~l~~P~~la~~~-dG~lyv~d~--~~I~~i~~~G~-----v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~ 248 (770)
..+..|.+|++++ ++.|||+|. ++|++++.+|. ..+++ ...+..|.+||||+.+++|||+|..+++|++
T Consensus 421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi---~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v 497 (791)
T 3m0c_C 421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 497 (791)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE---CSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE---ecCCCCcceeeeeecCCcEEEEecCCCeEEE
Confidence 4578899999998 789999998 58999998873 33444 3468899999999988899999999999999
Q ss_pred EeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC---eEEECCCCcEEE
Q psy4832 249 VLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN---IRVVSPEGIIHT 324 (770)
Q Consensus 249 i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~---Ir~id~~G~i~t 324 (770)
+ +.+|....+... ..+..|.+||||+ .|.|||+|.++ |.+++.+|...+
T Consensus 498 ~-------~ldG~~~~~l~~--------------------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~ 550 (791)
T 3m0c_C 498 A-------DTKGVKRKTLFR--------------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 550 (791)
T ss_dssp E-------ETTSSSEEEEEE--------------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred E-------eCCCCeEEEEEe--------------------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence 9 455553322211 1256799999998 58899999764 999999986554
Q ss_pred eecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCcc
Q psy4832 325 LIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRD 402 (770)
Q Consensus 325 ~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~ 402 (770)
.+... .|.+|.||++|+.++.|||+| +++|++++.+|..+.++...
T Consensus 551 ~lv~~--------------------~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~------------ 598 (791)
T 3m0c_C 551 SLVTE--------------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED------------ 598 (791)
T ss_dssp EEECS--------------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC------------
T ss_pred EEEeC--------------------CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC------------
Confidence 44321 377999999998789999999 58999999998633322110
Q ss_pred ccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEc-CCC
Q psy4832 403 FKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVID-STG 461 (770)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~-~~G 461 (770)
...|..|.+|+++ .+.|||+|+.+++| .+++ .+|
T Consensus 599 ---------------------~~~l~~P~glav~-~~~lYwtD~~~~~I---~~~dk~tG 633 (791)
T 3m0c_C 599 ---------------------EKRLAHPFSLAVF-EDKVFWTDIINEAI---FSANRLTG 633 (791)
T ss_dssp ---------------------TTTTSSEEEEEEE-TTEEEEEETTTTEE---EEEETTTC
T ss_pred ---------------------CCccCCCCEEEEe-CCEEEEEECCCCEE---EEEeCCCC
Confidence 1235679999996 45899999999875 5554 245
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-18 Score=185.18 Aligned_cols=243 Identities=13% Similarity=0.135 Sum_probs=169.2
Q ss_pred cccccCceEEEEcCCCC-EEEEeC-ceEEEEcCCC-cEEEEeccC----------------cccccceeEEEEeCCCCcE
Q psy4832 176 DARLLTPVALTSGPDGS-LYVGDF-NLVRRLTPEG-NVFTVLQLS----------------ATQVSYQYYLALSPADGHL 236 (770)
Q Consensus 176 ~~~l~~P~~la~~~dG~-lyv~d~-~~I~~i~~~G-~v~~~~~~~----------------~~~~~~p~~lav~p~~g~l 236 (770)
..+|..|.++++|++|+ +|+... ++|.++++++ .+..+.... ...+..|.+|++++.+|+|
T Consensus 15 ~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l 94 (322)
T 2fp8_A 15 EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQL 94 (322)
T ss_dssp ECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEE
T ss_pred CCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcE
Confidence 45688999999999999 555433 5999999876 455443210 0124579999999658999
Q ss_pred EEEeCCCcEEEEEeccCCccCCC-CcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCC---
Q psy4832 237 YISDAEKHQILRVLSLESVADPS-INWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGT--- 311 (770)
Q Consensus 237 yvsd~~~~~I~~i~~~~~~~~~~-g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~--- 311 (770)
||+|.. +.|+++ +++ +.++.++.... ...+..|.+|++|+ +|+|||+|..
T Consensus 95 ~v~d~~-~~i~~~-------d~~~g~~~~~~~~~~-----------------~~~~~~p~~i~~d~~~G~l~v~d~~~~~ 149 (322)
T 2fp8_A 95 YIVDCY-YHLSVV-------GSEGGHATQLATSVD-----------------GVPFKWLYAVTVDQRTGIVYFTDVSTLY 149 (322)
T ss_dssp EEEETT-TEEEEE-------CTTCEECEEEESEET-----------------TEECSCEEEEEECTTTCCEEEEESCSSC
T ss_pred EEEECC-CCEEEE-------eCCCCEEEEecccCC-----------------CCcccccceEEEecCCCEEEEECCcccc
Confidence 999987 458888 444 44445543110 12467899999999 9999999964
Q ss_pred ---------------C-eEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe--C
Q psy4832 312 ---------------N-IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID--D 371 (770)
Q Consensus 312 ---------------~-Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D--~ 371 (770)
. |.+++++ +.+..+. ..+..|.+|++++ +|+ |||+| +
T Consensus 150 ~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~----------------------~~~~~p~gia~~~-dg~~lyv~d~~~ 206 (322)
T 2fp8_A 150 DDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL----------------------KELHVPGGAEVSA-DSSFVLVAEFLS 206 (322)
T ss_dssp CTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE----------------------EEESCCCEEEECT-TSSEEEEEEGGG
T ss_pred cccccceehcccCCCceEEEEeCCCCEEEEec----------------------cCCccCcceEECC-CCCEEEEEeCCC
Confidence 1 6677765 4444332 1366899999999 765 99999 5
Q ss_pred CEEEEEcCCCc----EEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCC
Q psy4832 372 RVIFKLTNDLK----VKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADID 447 (770)
Q Consensus 372 ~~I~~i~~~G~----v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~ 447 (770)
++|++++.++. .+.+. . +..|.+|++|++|+|||++..
T Consensus 207 ~~I~~~~~~~~~~~~~~~~~------------------------------------~--~~gP~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 207 HQIVKYWLEGPKKGTAEVLV------------------------------------K--IPNPGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp TEEEEEESSSTTTTCEEEEE------------------------------------E--CSSEEEEEECTTSCEEEEEEE
T ss_pred CeEEEEECCCCcCCccceEE------------------------------------e--CCCCCCeEECCCCCEEEEecC
Confidence 89999987652 11111 0 112999999999999999976
Q ss_pred C-------CceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCC
Q psy4832 448 A-------RKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQG 520 (770)
Q Consensus 448 ~-------~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~ 520 (770)
. ..-.+|.+++++|++........ + ..+..|.+++. .+|.|||++..
T Consensus 249 ~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~--------------------g-----~~~~~~~~~~~-~~g~L~v~~~~ 302 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDEFGNILEVIPLPP--------------------P-----FAGEHFEQIQE-HDGLLYIGTLF 302 (322)
T ss_dssp ETTSSTTSCEEEEEEEECTTSCEEEEEECCT--------------------T-----TTTSCCCEEEE-ETTEEEEECSS
T ss_pred cccccccCCCccEEEEECCCCCEEEEEECCC--------------------C-----CccccceEEEE-eCCEEEEeecC
Confidence 1 00135788999998765543220 0 01566888887 58899999999
Q ss_pred CceEEeeecC
Q psy4832 521 SLHILALQHY 530 (770)
Q Consensus 521 ~~~I~~i~~~ 530 (770)
+++|.++...
T Consensus 303 ~~~i~~~~~~ 312 (322)
T 2fp8_A 303 HGSVGILVYD 312 (322)
T ss_dssp CSEEEEEEC-
T ss_pred CCceEEEecc
Confidence 9999988653
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=180.93 Aligned_cols=232 Identities=19% Similarity=0.298 Sum_probs=166.5
Q ss_pred cCCCeEEECCCccEEe-cccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCCEEEEeC-ceEEEEcCC
Q psy4832 130 FHEGILQKGDGSSLHL-KHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDF-NLVRRLTPE 207 (770)
Q Consensus 130 ~~~gil~~~dG~~~~~-~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~-~~I~~i~~~ 207 (770)
.|.+++...+|. +|+ ++...+.|..+...+..... .....+..|.+|+++++|+|||++. ++|.+++++
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~ 95 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV--------LPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAG 95 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE--------CCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTT
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce--------EeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCC
Confidence 788999999995 888 76567788777643322111 0123456899999999999999996 699999999
Q ss_pred CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccc
Q psy4832 208 GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPAL 287 (770)
Q Consensus 208 G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~ 287 (770)
|.....+. ...+..|.+|++++ +|+|||++..+++|++++. ........ .
T Consensus 96 ~~~~~~~~--~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~-------~~~~~~~~--------------------~ 145 (270)
T 1rwi_B 96 SNNQTVLP--FDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAA-------GSKTQTVL--------------------P 145 (270)
T ss_dssp CSCCEECC--CCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECT-------TCCSCEEC--------------------C
T ss_pred CceEeeee--cCCcCCCcceEECC-CCCEEEEECCCCEEEEEEC-------CCceeEee--------------------c
Confidence 87665443 23567899999997 8899999999899999932 11111110 0
Q ss_pred cccccCcceEEEccCCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe
Q psy4832 288 AAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS 365 (770)
Q Consensus 288 ~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~ 365 (770)
...+..|.+|+++++|+|||++..+ |++++.++........ ..+..|.+|++++ +|+
T Consensus 146 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~--------------------~~~~~p~~i~~d~-~g~ 204 (270)
T 1rwi_B 146 FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF--------------------TDITAPWGIAVDE-AGT 204 (270)
T ss_dssp CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC--------------------SSCCSEEEEEECT-TCC
T ss_pred cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc--------------------cCCCCceEEEECC-CCC
Confidence 1125579999999999999999754 9999988643322211 1246799999999 899
Q ss_pred EEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEE
Q psy4832 366 LHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYI 443 (770)
Q Consensus 366 lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyV 443 (770)
|||++ +++|.++++++....... ...+..|.+|+++++|+|||
T Consensus 205 l~v~~~~~~~v~~~~~~~~~~~~~~-----------------------------------~~~~~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 205 VYVTEHNTNQVVKLLAGSTTSTVLP-----------------------------------FTGLNTPLAVAVDSDRTVYV 249 (270)
T ss_dssp EEEEETTTSCEEEECTTCSCCEECC-----------------------------------CCSCSCEEEEEECTTCCEEE
T ss_pred EEEEECCCCcEEEEcCCCCcceeec-----------------------------------cCCCCCceeEEECCCCCEEE
Confidence 99999 679999998775332210 01245699999999999999
Q ss_pred EeCCCCceeeEEEEcC
Q psy4832 444 ADIDARKVNALRVIDS 459 (770)
Q Consensus 444 aD~~~~ri~~i~~i~~ 459 (770)
++..+++ |+.++.
T Consensus 250 ~~~~~~~---v~~~~~ 262 (270)
T 1rwi_B 250 ADRGNDR---VVKLTS 262 (270)
T ss_dssp EEGGGTE---EEEECC
T ss_pred EECCCCE---EEEEcC
Confidence 9999886 455543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-17 Score=175.51 Aligned_cols=233 Identities=17% Similarity=0.184 Sum_probs=164.5
Q ss_pred cCceEEEEcCCCCEEEEeC--ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCC--cEEEEEeccCCc
Q psy4832 180 LTPVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEK--HQILRVLSLESV 255 (770)
Q Consensus 180 ~~P~~la~~~dG~lyv~d~--~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~--~~I~~i~~~~~~ 255 (770)
..|.+++++++|+|||+|. ++|.+++++|++..++..+ ..|.+|++++ +|+|||+|..+ .+|++++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~----~~p~gia~~~-dG~l~vad~~~~~~~v~~~d----- 101 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVE----GKVSGLAFTS-NGDLVATGWNADSIPVVSLV----- 101 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECS----SEEEEEEECT-TSCEEEEEECTTSCEEEEEE-----
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCC----CCceeEEEcC-CCcEEEEeccCCcceEEEEc-----
Confidence 5799999999999999996 5999999999887776532 4699999997 78899999764 4588874
Q ss_pred cCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCCC---cEEEeecCCC
Q psy4832 256 ADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEG---IIHTLIGHHK 330 (770)
Q Consensus 256 ~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~G---~i~t~~g~~~ 330 (770)
..+|.++.++.... ...|.|+++.+++.+|++|..+ |+++++++ .+....+...
T Consensus 102 -~~~g~~~~~~~~~~--------------------~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~ 160 (306)
T 2p4o_A 102 -KSDGTVETLLTLPD--------------------AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA 160 (306)
T ss_dssp -CTTSCEEEEEECTT--------------------CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS
T ss_pred -CCCCeEEEEEeCCC--------------------ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccc
Confidence 35677776654211 2357889888888899999644 99999764 2322222110
Q ss_pred CCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCcccccccc
Q psy4832 331 HHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQS 408 (770)
Q Consensus 331 ~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~ 408 (770)
.. .....+..|.+| ++.++.|||+| +++|++++.++. |.....
T Consensus 161 ~~-------------~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~-----g~~~~~--------------- 205 (306)
T 2p4o_A 161 RS-------------NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDST-----DKPGEP--------------- 205 (306)
T ss_dssp CS-------------STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTT-----SCBCCC---------------
T ss_pred cc-------------cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCC-----CCCCcc---------------
Confidence 00 011246789999 55256899999 589999986531 100000
Q ss_pred ccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccC
Q psy4832 409 KTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKN 488 (770)
Q Consensus 409 ~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~ 488 (770)
.....+..|.+|++|++|+|||++..+++ |.+++++|++..+....
T Consensus 206 -------------~~~~~~~~P~gi~vd~dG~l~va~~~~~~---V~~~~~~G~~~~~~~~~------------------ 251 (306)
T 2p4o_A 206 -------------EIFVEQTNIDDFAFDVEGNLYGATHIYNS---VVRIAPDRSTTIIAQAE------------------ 251 (306)
T ss_dssp -------------EEEEESCCCSSEEEBTTCCEEEECBTTCC---EEEECTTCCEEEEECGG------------------
T ss_pred -------------EEEeccCCCCCeEECCCCCEEEEeCCCCe---EEEECCCCCEEEEeecc------------------
Confidence 00112357999999999999999998875 67889999876554221
Q ss_pred ccCcccccceecCCeeEEEEc---CC-CcEEEEcCCC
Q psy4832 489 SKETLLTSTARFTSISALSVS---PD-GVVNVADQGS 521 (770)
Q Consensus 489 ~~d~~~~~~~~l~~P~giav~---~d-G~lyvaD~~~ 521 (770)
..+..|.+++++ +| +.|||++..+
T Consensus 252 ---------~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 252 ---------QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ---------GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ---------cccCCceEEEEecccCCCCEEEEECCCC
Confidence 114569999998 77 5899998764
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.1e-17 Score=176.24 Aligned_cols=269 Identities=16% Similarity=0.208 Sum_probs=166.2
Q ss_pred cccCceEEEEcCCCCEEEEeC-ceEEEEcCCCcEEEEeccC--cccccceeEEEEeCC---CCcEEEEeCC---C----c
Q psy4832 178 RLLTPVALTSGPDGSLYVGDF-NLVRRLTPEGNVFTVLQLS--ATQVSYQYYLALSPA---DGHLYISDAE---K----H 244 (770)
Q Consensus 178 ~l~~P~~la~~~dG~lyv~d~-~~I~~i~~~G~v~~~~~~~--~~~~~~p~~lav~p~---~g~lyvsd~~---~----~ 244 (770)
.|..|++|+++|+|.|||++. ++|++++++|+ ..+.... ......|.+|+++|. ++.|||++.. + +
T Consensus 27 ~l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 27 DLEVPWSIAPLGGGRYLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp SCSCEEEEEEEETTEEEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCCeEEEEcCCCeEEEEeCCCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 478899999999999999998 69999998897 4444321 234567999999986 6999999874 3 7
Q ss_pred EEEEEeccCCccCCCCc---EEEEE-CCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC---------
Q psy4832 245 QILRVLSLESVADPSIN---WEVAV-GSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT--------- 311 (770)
Q Consensus 245 ~I~~i~~~~~~~~~~g~---~~~va-G~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~--------- 311 (770)
+|.+++.... ++. .+++. +.. ......|.+|+++++|.|||+...
T Consensus 106 ~v~r~~~~~~----~~~~~~~~~l~~~~~------------------~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d 163 (354)
T 3a9g_A 106 RVIRGRLDGS----TFKLKEVKTLIDGIP------------------GAYIHNGGRIRFGPDGMLYITTGDAADPRLAQD 163 (354)
T ss_dssp EEEEEEECSS----SCCEEEEEEEEEEEE------------------CCSSCCCCCEEECTTSCEEEECCCTTCGGGGTC
T ss_pred EEEEEEECCC----CcCcCccEEEEEcCC------------------CCCCcCCceEEECCCCcEEEEECCCCCCccccC
Confidence 8999964321 111 22222 110 012456889999999999999642
Q ss_pred ------CeEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC-----CEEEEEcCC
Q psy4832 312 ------NIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD-----RVIFKLTND 380 (770)
Q Consensus 312 ------~Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~-----~~I~~i~~~ 380 (770)
.|.+++++|.+. .. .|. .........+..|.||++++.+|.||++|+ ..|.++.+.
T Consensus 164 ~~~~~G~I~ri~~dG~~p---~~-------npf---~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G 230 (354)
T 3a9g_A 164 LSSLAGKILRVDEEGRPP---AD-------NPF---PNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKG 230 (354)
T ss_dssp TTCCSSEEEEECTTSCCC---TT-------SSS---TTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTT
T ss_pred CCCCCeEEEEEcCCCCCC---CC-------CCC---CCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCC
Confidence 277888877531 00 010 011222345789999999997789999994 245555432
Q ss_pred CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccc-cccCCeeEEEE-------cCCCCEEEEeCCCCcee
Q psy4832 381 LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASN-MDLGSLTALAF-------SPTGDLYIADIDARKVN 452 (770)
Q Consensus 381 G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~l~~P~giav-------d~~G~lyVaD~~~~ri~ 452 (770)
+. .|.|.... ....+ .+. ...... ..-..|.|+++ +.+|.|||++...++|.
T Consensus 231 ~n----yGwp~~~g--~~~~~------------~~~--~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~ 290 (354)
T 3a9g_A 231 GN----YGWPLATG--KAGRG------------EFV--DPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLA 290 (354)
T ss_dssp CB----CCTTTCCS--CCCCT------------TSC--CCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEE
T ss_pred Cc----CCCCcccC--CCCCC------------CCc--CCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEE
Confidence 21 22221110 00000 000 000000 12357999999 56899999999988765
Q ss_pred eEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCC-Cc---------
Q psy4832 453 ALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQG-SL--------- 522 (770)
Q Consensus 453 ~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~-~~--------- 522 (770)
++.. +.+|.+.... ..+. ..+..|.+|+++|||.|||++.. ++
T Consensus 291 ~~~~-~~~g~~~~~~------------------------~~~~--~~~~rp~~v~~~pDG~lyv~~~~~~G~g~~~~~~g 343 (354)
T 3a9g_A 291 AVNF-GDNMEVRKIS------------------------TFFK--NVFGRLRDVVIDDDGGILISTSNRDGRGSLRAGDD 343 (354)
T ss_dssp EEEE-CGGGCEEEEE------------------------EECT--TTSCCEEEEEECTTSCEEEEECTTSSSSCCCTTCS
T ss_pred EEEE-CCCCccccee------------------------eecc--CCCCCeeEEEECCCCcEEEEEeCCCCCcCCCCCCC
Confidence 4432 3344432110 0000 01457999999999999999863 43
Q ss_pred eEEeeec
Q psy4832 523 HILALQH 529 (770)
Q Consensus 523 ~I~~i~~ 529 (770)
+|+||.+
T Consensus 344 ~i~ri~~ 350 (354)
T 3a9g_A 344 KILKIVS 350 (354)
T ss_dssp CEEEEEE
T ss_pred EEEEEec
Confidence 6666654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-17 Score=177.51 Aligned_cols=270 Identities=23% Similarity=0.277 Sum_probs=159.1
Q ss_pred cccCceEEEEcCCCCEEEEeC-ceEEEEcCCCcEEEEeccC--cccccceeEEEEeCC---CCcEEEEeCCC-----cEE
Q psy4832 178 RLLTPVALTSGPDGSLYVGDF-NLVRRLTPEGNVFTVLQLS--ATQVSYQYYLALSPA---DGHLYISDAEK-----HQI 246 (770)
Q Consensus 178 ~l~~P~~la~~~dG~lyv~d~-~~I~~i~~~G~v~~~~~~~--~~~~~~p~~lav~p~---~g~lyvsd~~~-----~~I 246 (770)
.|..|++|+++|+|.|||++. ++|++++ +|+...+.... ......|.+|+++|. ++.|||++... ++|
T Consensus 29 ~l~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 29 GLEVPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CCSCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCCCceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 478899999999999999998 6999998 88766554432 234678999999985 58999999864 789
Q ss_pred EEEeccCCccCCCCcEEEEE-CCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC--------------
Q psy4832 247 LRVLSLESVADPSINWEVAV-GSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT-------------- 311 (770)
Q Consensus 247 ~~i~~~~~~~~~~g~~~~va-G~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~-------------- 311 (770)
.+++..... . ...+++. +... .......|.+|+++++|.|||++..
T Consensus 108 ~r~~~~~~~--~-~~~~~l~~~~p~----------------~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~ 168 (352)
T 2ism_A 108 VRLRHLGER--G-VLDRVVLDGIPA----------------RPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLG 168 (352)
T ss_dssp EEEEECSSC--E-EEEEEEEEEECC----------------CTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSS
T ss_pred EEEEeCCCC--c-CceEEEEEeCCC----------------CCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCc
Confidence 999642110 0 0122222 1110 0112457899999999999999742
Q ss_pred -CeEEECCCCcEEEeecCCCCCCCcCCCccC--CCcccccccccCcceEEEeCCCCeEEEEeC--CEEEEEcCCCcEEEE
Q psy4832 312 -NIRVVSPEGIIHTLIGHHKHHNIWSPFNCH--RSFPASTAQLQWPTGLALSPLDDSLHFIDD--RVIFKLTNDLKVKIV 386 (770)
Q Consensus 312 -~Ir~id~~G~i~t~~g~~~~~~~~~p~~~~--~~~~~~~~~l~~P~gla~d~~~g~lyv~D~--~~I~~i~~~G~v~~v 386 (770)
.|.+++++|.+.. +. |+... .........+.+|.+|+++|.+|.||++|. +.+.. .+..++..+
T Consensus 169 g~I~ri~~dG~~p~--~n--------pf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~-~~~dei~~i 237 (352)
T 2ism_A 169 GKILRLTPEGEPAP--GN--------PFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQG-YGHDEVNLI 237 (352)
T ss_dssp SEEEEECTTSSBCT--TC--------TTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC-------CCCEEEEE
T ss_pred eEEEEEcCCCCCCC--CC--------cccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCC-CCCeEEEEe
Confidence 2788888874311 00 11000 011122345788999999997789999993 33211 111122222
Q ss_pred e-----cCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCC
Q psy4832 387 A-----GIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTG 461 (770)
Q Consensus 387 a-----G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G 461 (770)
. |.|.... ....+ .+ ............|.||++ .+|.|||++..+++|.++.. +.++
T Consensus 238 ~~G~nyGwp~~~g--~~~~~------------~~--~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~-~~~~ 299 (352)
T 2ism_A 238 VPGGNYGWPRVVG--RGNDP------------RY--RDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVL-EGER 299 (352)
T ss_dssp CTTCBCCTTTCCS--CCCCT------------TS--CCCSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEE-EEET
T ss_pred ccCCcCCCCcccC--CCCCC------------CC--cCCeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEE-CCCC
Confidence 2 1111100 00000 00 000001122357999999 68999999999987655533 2233
Q ss_pred cEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCC
Q psy4832 462 RMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQG 520 (770)
Q Consensus 462 ~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~ 520 (770)
....+. .. ...+ ..+.+|.+|+++|||.|||++..
T Consensus 300 ~~~~~~-~~--------------------~~~~---~~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 300 GRWRVL-RV--------------------ETAL---SGFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp TEEEEE-EE--------------------EEEE---ESSCCEEEEEECTTSCEEEEECS
T ss_pred cceeec-ch--------------------heec---ccCCCeeEEEECCCCcEEEEEeC
Confidence 211010 00 0001 12457999999999999999865
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-18 Score=204.73 Aligned_cols=233 Identities=18% Similarity=0.171 Sum_probs=165.5
Q ss_pred EcCCCCEEEEeCceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEE
Q psy4832 187 SGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAV 266 (770)
Q Consensus 187 ~~~dG~lyv~d~~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~va 266 (770)
+++...|+++..+.|++++.++...+.+ ...+..|.+|++++.++.|||+|..+++|++++. ++.. .
T Consensus 374 ~~~~~~ll~~~~~~I~~id~~~~~~~~~---~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~-------~g~~---~ 440 (699)
T 1n7d_A 374 VGSIAYLFFTNRHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQL-------DRAH---G 440 (699)
T ss_dssp CSSCCCBCCCCTTC-CEECTTSCCEECC---SCCCTTCCCCEEETTTTEEEECCTTTTSBEEEES-------CCCC---C
T ss_pred cccceeEEecCccceEEEeCCCCcceee---eccCcceEEEccccccCeEEEEecCCCeEEEEec-------CCCC---C
Confidence 4566778888888999999887543322 2357789999999888999999999999999953 3210 0
Q ss_pred CCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCccCCC
Q psy4832 267 GSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRS 343 (770)
Q Consensus 267 G~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~ 343 (770)
+... .......+..|.|||+|. .++|||+|..+ |.+++.+|...+.+...
T Consensus 441 ~~~~-------------~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~-------------- 493 (699)
T 1n7d_A 441 VSSY-------------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-------------- 493 (699)
T ss_dssp -CCC-------------CCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC--------------
T ss_pred Ccce-------------EEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeC--------------
Confidence 0000 011123366899999994 78899999765 99999998644433221
Q ss_pred cccccccccCcceEEEeCCCCeEEEEeC---CEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcc
Q psy4832 344 FPASTAQLQWPTGLALSPLDDSLHFIDD---RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420 (770)
Q Consensus 344 ~~~~~~~l~~P~gla~d~~~g~lyv~D~---~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (770)
.+..|.+||++|..+.|||+|. ++|++++.+|....++.
T Consensus 494 ------~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~-------------------------------- 535 (699)
T 1n7d_A 494 ------QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-------------------------------- 535 (699)
T ss_dssp ------SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES--------------------------------
T ss_pred ------CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE--------------------------------
Confidence 2567999999997789999992 68999988875433221
Q ss_pred cccccccCCeeEEEEcCC-CCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCccccccee
Q psy4832 421 RASNMDLGSLTALAFSPT-GDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTAR 499 (770)
Q Consensus 421 ~a~~~~l~~P~giavd~~-G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 499 (770)
...|..|+|||+|++ +.|||+|..+++ |.+++.+|........ ....
T Consensus 536 ---~~~l~~PnGlavd~~~~~LY~aD~~~~~---I~~~d~dG~~~~~~~~--------------------------~~~~ 583 (699)
T 1n7d_A 536 ---TENIQWPNGITLDLLSGRLYWVDSKLHS---ISSIDVNGGNRKTILE--------------------------DEKR 583 (699)
T ss_dssp ---CSSCSSCCCEEECTTTCCEEEEETTTTE---EEEECSSSSCCEEECC--------------------------CSSS
T ss_pred ---eCCCCCccEEEEeccCCEEEEEecCCCe---EEEEccCCCceEEEEe--------------------------cCCc
Confidence 123567999999985 789999998875 7788887743222211 1123
Q ss_pred cCCeeEEEEcCCCcEEEEcCCCceEEeeecC
Q psy4832 500 FTSISALSVSPDGVVNVADQGSLHILALQHY 530 (770)
Q Consensus 500 l~~P~giav~~dG~lyvaD~~~~~I~~i~~~ 530 (770)
+..|.+|+++.+ .|||+|..+++|+++.+.
T Consensus 584 ~~~P~glavd~~-~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 584 LAHPFSLAVFED-KVFWTDIINEAIFSANRL 613 (699)
T ss_dssp CSSCCCCEEETT-EEEEECSTTTCEEEEETT
T ss_pred CCCceEeEEECC-EEEEEeCCCCeEEEEEcc
Confidence 678999999876 899999999999999764
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-18 Score=200.44 Aligned_cols=203 Identities=17% Similarity=0.212 Sum_probs=148.2
Q ss_pred ccccCceEEEEcC-CCCEEEEeC--ceEEEEcCCC----cE-EEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEE
Q psy4832 177 ARLLTPVALTSGP-DGSLYVGDF--NLVRRLTPEG----NV-FTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILR 248 (770)
Q Consensus 177 ~~l~~P~~la~~~-dG~lyv~d~--~~I~~i~~~G----~v-~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~ 248 (770)
..+..|.+|++++ ++.|||+|. ++|++++.+| .. ..++ ...+..|.+||+++.+++|||+|..+++|.+
T Consensus 403 ~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i---~~~~~~P~glavD~~~g~LY~tD~~~~~I~v 479 (699)
T 1n7d_A 403 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 479 (699)
T ss_dssp CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC---CSCC--CCCEECCCSSSBCEECCTTTSCEEE
T ss_pred ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE---eCCCCCcceEEEEeeCCcEEEEeccCCeEEE
Confidence 3467899999998 678999997 5999999886 22 2222 3457789999999888999999999999999
Q ss_pred EeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC---eEEECCCCcEEE
Q psy4832 249 VLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN---IRVVSPEGIIHT 324 (770)
Q Consensus 249 i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~---Ir~id~~G~i~t 324 (770)
+ +++|....+... ..+..|.+||+|+ .|.|||+|... |.+++.+|...+
T Consensus 480 ~-------d~dg~~~~~l~~--------------------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~ 532 (699)
T 1n7d_A 480 A-------DTKGVKRKTLFR--------------------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 532 (699)
T ss_dssp E-------BSSSCCEEEECC--------------------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC
T ss_pred E-------ecCCCceEEEEe--------------------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee
Confidence 9 455553332211 1255799999998 67899999643 888888875443
Q ss_pred eecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEE-EEecCCCCCCCCCCCCc
Q psy4832 325 LIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVK-IVAGIPLHCRTGDKDKR 401 (770)
Q Consensus 325 ~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~-~vaG~~~~~~~~~~~~~ 401 (770)
++.. ..|.+|.|||+++.++.|||+| +++|++++.+|..+ +++..
T Consensus 533 ~l~~--------------------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~------------ 580 (699)
T 1n7d_A 533 SLVT--------------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED------------ 580 (699)
T ss_dssp EESC--------------------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCC------------
T ss_pred EEEe--------------------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEec------------
Confidence 3321 1477999999998678999999 58999999887533 33211
Q ss_pred cccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCcEEEee
Q psy4832 402 DFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGRMFDFA 467 (770)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~i~~~a 467 (770)
...+..|.||+++.+ .|||+|+.+++ |.++++ +|+.....
T Consensus 581 ----------------------~~~~~~P~glavd~~-~lywtd~~~~~---V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 581 ----------------------EKRLAHPFSLAVFED-KVFWTDIINEA---IFSANRLTGSDVNLL 621 (699)
T ss_dssp ----------------------SSSCSSCCCCEEETT-EEEEECSTTTC---EEEEETTTEEEEECC
T ss_pred ----------------------CCcCCCceEeEEECC-EEEEEeCCCCe---EEEEEccCCCceEEe
Confidence 123567999999864 89999999886 566665 67655443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-15 Score=158.55 Aligned_cols=230 Identities=18% Similarity=0.242 Sum_probs=166.7
Q ss_pred ccccCceEEEEcCCCC-EEEEeC--ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccC
Q psy4832 177 ARLLTPVALTSGPDGS-LYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLE 253 (770)
Q Consensus 177 ~~l~~P~~la~~~dG~-lyv~d~--~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~ 253 (770)
..+..|.+++++|+|+ ||+++. +.|.++++++. ...+. .....|.+|++++ +|.||+++...++|.++
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~---~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~---- 95 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEM---HPSHHQNGHCLNK-QGHLIACSHGLRRLERQ---- 95 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEE---SSCSSEEEEEECT-TCCEEEEETTTTEEEEE----
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEE---CCCCCcceeeECC-CCcEEEEecCCCeEEEE----
Confidence 3466799999999998 899886 59999999877 44442 2345699999997 89999999988999999
Q ss_pred CccCC-CCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeC------------------C-Ce
Q psy4832 254 SVADP-SINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADG------------------T-NI 313 (770)
Q Consensus 254 ~~~~~-~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~------------------~-~I 313 (770)
++ +|.+..+..... ...+..|.+|+++++|+|||+|. . .|
T Consensus 96 ---d~~~g~~~~~~~~~~-----------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l 155 (296)
T 3e5z_A 96 ---REPGGEWESIADSFE-----------------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWV 155 (296)
T ss_dssp ---CSTTCCEEEEECEET-----------------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEE
T ss_pred ---cCCCCcEEEEeeccC-----------------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEE
Confidence 44 677666543100 12356799999999999999864 1 38
Q ss_pred EEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcC--CCcE---EEE
Q psy4832 314 RVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTN--DLKV---KIV 386 (770)
Q Consensus 314 r~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~--~G~v---~~v 386 (770)
++++++|.+..+.. .+..|.+|+++| +|++++++ +++|++++. +|.+ ..+
T Consensus 156 ~~~~~~g~~~~~~~----------------------~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~ 212 (296)
T 3e5z_A 156 FRLAPDGTLSAPIR----------------------DRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVH 212 (296)
T ss_dssp EEECTTSCEEEEEC----------------------CCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEE
T ss_pred EEECCCCCEEEeec----------------------CCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeE
Confidence 88988887766542 245789999999 88766888 478988874 5665 222
Q ss_pred ecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEe
Q psy4832 387 AGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDF 466 (770)
Q Consensus 387 aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~ 466 (770)
. .. ....|.+|++|++|+|||+. ++ .|.+++++|+....
T Consensus 213 ~-~~-----------------------------------~~~~p~~i~~d~~G~l~v~~--~~---~v~~~~~~g~~~~~ 251 (296)
T 3e5z_A 213 F-TV-----------------------------------EPGKTDGLRVDAGGLIWASA--GD---GVHVLTPDGDELGR 251 (296)
T ss_dssp E-CC-----------------------------------SSSCCCSEEEBTTSCEEEEE--TT---EEEEECTTSCEEEE
T ss_pred e-eC-----------------------------------CCCCCCeEEECCCCCEEEEc--CC---eEEEECCCCCEEEE
Confidence 2 11 12358999999999999999 33 47888998876543
Q ss_pred ecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEE-cCCC-cEEEEcCCCceEEeeecCC
Q psy4832 467 AGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSV-SPDG-VVNVADQGSLHILALQHYL 531 (770)
Q Consensus 467 aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav-~~dG-~lyvaD~~~~~I~~i~~~~ 531 (770)
.... -. |.++++ +++| .|||+.. ..+.++....
T Consensus 252 ~~~~-----------------------------~~-~~~~~f~~~d~~~L~v~t~--~~l~~~~~~~ 286 (296)
T 3e5z_A 252 VLTP-----------------------------QT-TSNLCFGGPEGRTLYMTVS--TEFWSIETNV 286 (296)
T ss_dssp EECS-----------------------------SC-CCEEEEESTTSCEEEEEET--TEEEEEECSC
T ss_pred EECC-----------------------------CC-ceeEEEECCCCCEEEEEcC--CeEEEEEccc
Confidence 3211 12 677888 4676 5898875 3677776543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-15 Score=160.19 Aligned_cols=242 Identities=14% Similarity=0.192 Sum_probs=170.3
Q ss_pred ccccCceEEEEcCCCCEEEE-------eC--ceEEEEcC-CCcEEEEecc-CcccccceeEEEEeCCCCcEEEEeCCCcE
Q psy4832 177 ARLLTPVALTSGPDGSLYVG-------DF--NLVRRLTP-EGNVFTVLQL-SATQVSYQYYLALSPADGHLYISDAEKHQ 245 (770)
Q Consensus 177 ~~l~~P~~la~~~dG~lyv~-------d~--~~I~~i~~-~G~v~~~~~~-~~~~~~~p~~lav~p~~g~lyvsd~~~~~ 245 (770)
..|..|.+++++++|.||++ +. +.|.++++ +|++..+... .......|.++++++.+|+|||++..+ .
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~-~ 93 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL-G 93 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT-E
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC-C
Confidence 45778999999999999999 54 58999994 6777654320 001235689999997339999999854 8
Q ss_pred EEEEeccCCccCCCCcEEEE-ECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC-------------
Q psy4832 246 ILRVLSLESVADPSINWEVA-VGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT------------- 311 (770)
Q Consensus 246 I~~i~~~~~~~~~~g~~~~v-aG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~------------- 311 (770)
|++++ ++|.+..+ ..... ...+..|.+|++|++|+|||++..
T Consensus 94 l~~~d-------~~g~~~~~~~~~~~-----------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~ 149 (314)
T 1pjx_A 94 LLVVQ-------TDGTFEEIAKKDSE-----------------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ 149 (314)
T ss_dssp EEEEE-------TTSCEEECCSBCTT-----------------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred EEEEe-------CCCCEEEEEeccCC-----------------CccccCCcCEEECCCCCEEEEecCccccccccccccc
Confidence 88884 44665543 22100 012457999999999999999863
Q ss_pred ----CeEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEe----CCCC-eEEEEe--CCEEEEEcC-
Q psy4832 312 ----NIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS----PLDD-SLHFID--DRVIFKLTN- 379 (770)
Q Consensus 312 ----~Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d----~~~g-~lyv~D--~~~I~~i~~- 379 (770)
.|.+++++|.+..+.. .+..|.+++++ + ++ .|||++ +++|++++.
T Consensus 150 ~~~~~l~~~~~~g~~~~~~~----------------------~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~ 206 (314)
T 1pjx_A 150 EKFGSIYCFTTDGQMIQVDT----------------------AFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIK 206 (314)
T ss_dssp SSCEEEEEECTTSCEEEEEE----------------------EESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEE
T ss_pred CCCCeEEEECCCCCEEEecc----------------------CCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECC
Confidence 3888888787665432 24568999999 9 77 699998 478999884
Q ss_pred -CCcEE---EEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEE
Q psy4832 380 -DLKVK---IVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALR 455 (770)
Q Consensus 380 -~G~v~---~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~ 455 (770)
+|++. .+...+. ..+..|.+|++|++|+|||++..+++ |.
T Consensus 207 ~~g~~~~~~~~~~~~~---------------------------------~~~~~p~~i~~d~~G~l~v~~~~~~~---i~ 250 (314)
T 1pjx_A 207 GPAKIENKKVWGHIPG---------------------------------THEGGADGMDFDEDNNLLVANWGSSH---IE 250 (314)
T ss_dssp ETTEEEEEEEEEECCC---------------------------------CSSCEEEEEEEBTTCCEEEEEETTTE---EE
T ss_pred CCCccccceEEEECCC---------------------------------CCCCCCCceEECCCCCEEEEEcCCCE---EE
Confidence 45432 1111100 00145899999999999999977664 67
Q ss_pred EEcCC-CcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCc-EEEEcCCCceEEeeecCC
Q psy4832 456 VIDST-GRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGV-VNVADQGSLHILALQHYL 531 (770)
Q Consensus 456 ~i~~~-G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~-lyvaD~~~~~I~~i~~~~ 531 (770)
+++++ |++....... ...|.+++++++|. |||++..++.|.++....
T Consensus 251 ~~d~~~g~~~~~~~~~-----------------------------~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 251 VFGPDGGQPKMRIRCP-----------------------------FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EECTTCBSCSEEEECS-----------------------------SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEcCCCCcEeEEEeCC-----------------------------CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 78876 6542222111 14589999999998 999999888998887643
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-16 Score=168.77 Aligned_cols=286 Identities=18% Similarity=0.193 Sum_probs=169.8
Q ss_pred cccCceEEEEcCCCC-EEEEeC-ceEEEEcCCCcEEEEe-ccC---cccccceeEEEEeCC---CCcEEEEeCC------
Q psy4832 178 RLLTPVALTSGPDGS-LYVGDF-NLVRRLTPEGNVFTVL-QLS---ATQVSYQYYLALSPA---DGHLYISDAE------ 242 (770)
Q Consensus 178 ~l~~P~~la~~~dG~-lyv~d~-~~I~~i~~~G~v~~~~-~~~---~~~~~~p~~lav~p~---~g~lyvsd~~------ 242 (770)
.|..|++|+++|+|+ |||++. ++|++++++|...+.+ +.. ......|.+|+++|. ++.|||++..
T Consensus 16 ~l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 16 KLDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp EESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 578999999999999 999998 5999999888765322 221 123456899999986 7999999865
Q ss_pred -CcEEEEEeccCCccCCCCc---EEEEE-CCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC------
Q psy4832 243 -KHQILRVLSLESVADPSIN---WEVAV-GSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT------ 311 (770)
Q Consensus 243 -~~~I~~i~~~~~~~~~~g~---~~~va-G~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~------ 311 (770)
.++|.+++.... ++. .+++. +... .......|.+|+++++|.|||+...
T Consensus 96 ~~~~v~r~~~~~~----~~~~~~~~~i~~~~p~----------------~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~ 155 (353)
T 2g8s_A 96 AGTAVGYGRLSDD----LSKVTDFRTVFRQMPK----------------LSTGNHFGGRLVFDGKGYLFIALGENNQRPT 155 (353)
T ss_dssp EEEEEEEEEECTT----SSBEEEEEEEEECSSC----------------CBSSSCCCCCEEECSSSEEEEEECCTTCGGG
T ss_pred ceeEEEEEEECCC----CCCCCceEEEEEECCC----------------CCCCcccCccEEECCCCcEEEEECCCCCCCc
Confidence 468888854211 111 22222 2110 0112446889999999999999632
Q ss_pred ---------CeEEECCCCcEEEeecCCCCCCCcCCCccCC--CcccccccccCcceEEEeCCCCeEEEEeCC-----EEE
Q psy4832 312 ---------NIRVVSPEGIIHTLIGHHKHHNIWSPFNCHR--SFPASTAQLQWPTGLALSPLDDSLHFIDDR-----VIF 375 (770)
Q Consensus 312 ---------~Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~--~~~~~~~~l~~P~gla~d~~~g~lyv~D~~-----~I~ 375 (770)
.|.+++++|.+.. +. |+.... ....-...+.+|.+|++++.+|.||++|++ .|.
T Consensus 156 ~q~~~~~~g~I~ri~~dG~~p~--~n--------pf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~ 225 (353)
T 2g8s_A 156 AQDLDKLQGKLVRLTDQGEIPD--DN--------PFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEIN 225 (353)
T ss_dssp GGCTTSCTTEEEEEETTSCCCT--TC--------TTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEE
T ss_pred cCCCCCCCeEEEEECCCCCCCC--CC--------CCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEe
Confidence 2888888875311 11 110000 112223457899999999877999999943 565
Q ss_pred EEcCCCcEEEEecCCCCCCC-CCCCCccccccccccccccccCCcccccccccCCeeEEEEcC-------CCCEEEEeCC
Q psy4832 376 KLTNDLKVKIVAGIPLHCRT-GDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSP-------TGDLYIADID 447 (770)
Q Consensus 376 ~i~~~G~v~~vaG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~-------~G~lyVaD~~ 447 (770)
+|.+.+. .|.|..... ...+....... ......+ ............|.|+++.. +|.+||+|..
T Consensus 226 ~i~~G~n----yGwp~~~~~~~~~~~~~~~~~--~~~~~~~--~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~ 297 (353)
T 2g8s_A 226 IPQKGKN----YGWPLATWGINYSGFKIPEAK--GEIVAGT--EQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALK 297 (353)
T ss_dssp CCCTTCB----CCTTTBCSSBCTTSSCCTTCC--BSSCTTS--CCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETT
T ss_pred EeccCCc----CCCCCccCCCCCCCCccCccc--CCCCCCc--cCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEcc
Confidence 5544332 132221000 00000000000 0000000 00000111124799999963 5899999999
Q ss_pred CCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEE-cCCCceEEe
Q psy4832 448 ARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVA-DQGSLHILA 526 (770)
Q Consensus 448 ~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyva-D~~~~~I~~ 526 (770)
.++|.++..- ++++... . .++. ..+.+|.+|+++|||.|||+ |..+++|+|
T Consensus 298 ~~~v~~~~~~--~~~~~~~---~---------------------~~~~--~~~~rp~~v~~~pdG~lyv~td~~~g~I~r 349 (353)
T 2g8s_A 298 DKDVIVMSVN--GDKVTED---G---------------------RILT--DRGQRIRDVRTGPDGYLYVLTDESSGELLK 349 (353)
T ss_dssp TTEEEEEEEE--TTEEEEE---E---------------------EESG--GGCCCEEEEEECTTSCEEEEECSTTEEEEE
T ss_pred CCEEEEEEeC--CCeEeee---E---------------------Eccc--CCCCceeEEEECCCCcEEEEEeCCCCEEEE
Confidence 9876555432 3332111 0 0000 12457999999999999997 768899999
Q ss_pred eec
Q psy4832 527 LQH 529 (770)
Q Consensus 527 i~~ 529 (770)
|.+
T Consensus 350 i~~ 352 (353)
T 2g8s_A 350 VSP 352 (353)
T ss_dssp EEC
T ss_pred EeC
Confidence 865
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.6e-16 Score=163.92 Aligned_cols=243 Identities=14% Similarity=0.168 Sum_probs=165.1
Q ss_pred eeecCCCeEEECCCccEEecccCCCeEEEEeccCc-cCCccCC-------CCCc---ccccccccCceEEEEcC-CCCEE
Q psy4832 127 HYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGL-QRPLVCK-------DCDG---VARDARLLTPVALTSGP-DGSLY 194 (770)
Q Consensus 127 ~~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~-~~~~~~~-------~~~g---~~~~~~l~~P~~la~~~-dG~ly 194 (770)
.|..|+|++.+.+|..+|+.. ..+.|..+...+. ...+... .|.| ......+..|.+|++++ +|+||
T Consensus 17 ~~~~p~~i~~d~~g~~l~v~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~ 95 (322)
T 2fp8_A 17 PSYAPNSFTFDSTNKGFYTSV-QDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY 95 (322)
T ss_dssp SSSCCCCEECCTTCSSEEEEC-TTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred ccCCceEEEEcCCCCEEEEEc-CCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE
Confidence 356799999999986677765 6778888765442 2211100 0111 11223456899999997 89999
Q ss_pred EEeC-ceEEEEcCCCc-EEEEecc-CcccccceeEEEEeCCCCcEEEEeCCC-----------------cEEEEEeccCC
Q psy4832 195 VGDF-NLVRRLTPEGN-VFTVLQL-SATQVSYQYYLALSPADGHLYISDAEK-----------------HQILRVLSLES 254 (770)
Q Consensus 195 v~d~-~~I~~i~~~G~-v~~~~~~-~~~~~~~p~~lav~p~~g~lyvsd~~~-----------------~~I~~i~~~~~ 254 (770)
|+|. +.|.++++++. +..+... ....+..|.+|++++.+|+|||+|..+ ++|++++
T Consensus 96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d---- 171 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD---- 171 (322)
T ss_dssp EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE----
T ss_pred EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe----
Confidence 9997 47999998854 3444321 123467899999996478999999763 5677773
Q ss_pred ccCCC-CcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEECCCCc----EEEee
Q psy4832 255 VADPS-INWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVSPEGI----IHTLI 326 (770)
Q Consensus 255 ~~~~~-g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id~~G~----i~t~~ 326 (770)
++ +.+..+. ..+..|.||+++++|. |||+|..+ |++++.++. ...+.
T Consensus 172 ---~~~~~~~~~~----------------------~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~ 226 (322)
T 2fp8_A 172 ---PSTKETTLLL----------------------KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV 226 (322)
T ss_dssp ---TTTTEEEEEE----------------------EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE
T ss_pred ---CCCCEEEEec----------------------cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE
Confidence 32 3343332 1256799999999986 99999764 999987642 22111
Q ss_pred cCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC------------CEEEEEcCCCcEEEEecCCCCCC
Q psy4832 327 GHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD------------RVIFKLTNDLKVKIVAGIPLHCR 394 (770)
Q Consensus 327 g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~------------~~I~~i~~~G~v~~vaG~~~~~~ 394 (770)
.+..|.+|++|+ +|+|||++. ++|.+++++|++......+..
T Consensus 227 -----------------------~~~gP~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g-- 280 (322)
T 2fp8_A 227 -----------------------KIPNPGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPP-- 280 (322)
T ss_dssp -----------------------ECSSEEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTT--
T ss_pred -----------------------eCCCCCCeEECC-CCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCC--
Confidence 011299999999 999999983 479999999986655432210
Q ss_pred CCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC
Q psy4832 395 TGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS 459 (770)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~ 459 (770)
..+..|.++++ .+|.|||++..+++| .+++.
T Consensus 281 ------------------------------~~~~~~~~~~~-~~g~L~v~~~~~~~i---~~~~~ 311 (322)
T 2fp8_A 281 ------------------------------FAGEHFEQIQE-HDGLLYIGTLFHGSV---GILVY 311 (322)
T ss_dssp ------------------------------TTTSCCCEEEE-ETTEEEEECSSCSEE---EEEEC
T ss_pred ------------------------------CccccceEEEE-eCCEEEEeecCCCce---EEEec
Confidence 01456888887 478999999988864 45444
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.9e-15 Score=158.87 Aligned_cols=261 Identities=13% Similarity=0.168 Sum_probs=169.1
Q ss_pred cCceEEEEcCCCCEEEEeC----c--eEEEEcCCCcEEEEe---ccCcccccceeEEEEeCCCCcEEEEeCC-----CcE
Q psy4832 180 LTPVALTSGPDGSLYVGDF----N--LVRRLTPEGNVFTVL---QLSATQVSYQYYLALSPADGHLYISDAE-----KHQ 245 (770)
Q Consensus 180 ~~P~~la~~~dG~lyv~d~----~--~I~~i~~~G~v~~~~---~~~~~~~~~p~~lav~p~~g~lyvsd~~-----~~~ 245 (770)
..|.+|+++++|.|||+.. + +|.+++ +|++...- ......+..|++|++++ +|+|||+|.. .++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~~~~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDGLIPFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTEEEESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCCeecCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCCCCe
Confidence 4899999999999999963 2 788888 78755321 11234678999999997 7999999987 579
Q ss_pred EEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeC---CC--eEEECCC
Q psy4832 246 ILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADG---TN--IRVVSPE 319 (770)
Q Consensus 246 I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~---~~--Ir~id~~ 319 (770)
|++++. .++.+......+.. . ......|.+|++|+ +|.+||+|. .. |.+++.+
T Consensus 95 i~~~d~------~tg~~~~~~~~~~~-----------~----~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~ 153 (343)
T 2qe8_A 95 LVAWDT------LNNQLSRVIYLPPP-----------I----TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ 153 (343)
T ss_dssp EEEEET------TTTEEEEEEECCTT-----------T----SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT
T ss_pred EEEEEC------CCCeEEEEEECChh-----------h----cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC
Confidence 999942 23553333321110 0 01134689999996 578999997 43 8889865
Q ss_pred -CcEEEeecCCCCCCCcCCCc----cCCCccc----ccc----cccCcceEEEeCCCC-eEEEEe--CCEEEEEcCC---
Q psy4832 320 -GIIHTLIGHHKHHNIWSPFN----CHRSFPA----STA----QLQWPTGLALSPLDD-SLHFID--DRVIFKLTND--- 380 (770)
Q Consensus 320 -G~i~t~~g~~~~~~~~~p~~----~~~~~~~----~~~----~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~~~--- 380 (770)
|.+..+...... ..|.+ .+ +... ... ....|.||+++| +| .||+++ .++|++++.+
T Consensus 154 ~g~~~r~~~~~~~---~~~~~~~~~~~-g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~ 228 (343)
T 2qe8_A 154 TGLAARVLQGYPG---IAPEDIDLVID-GVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADLS 228 (343)
T ss_dssp TCCEEEECTTCTT---TSCCSCCCEET-TEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHHT
T ss_pred CCCEEEEecCCCc---ccccccceeEC-CEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHhc
Confidence 777665532100 00100 00 0000 000 013589999999 76 699998 4689888632
Q ss_pred -CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC
Q psy4832 381 -LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS 459 (770)
Q Consensus 381 -G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~ 459 (770)
+.+. .+... ..+........|.||++|++|+|||++..+++ |.++++
T Consensus 229 ~~~~~--~~~~~---------------------------~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~---V~~~d~ 276 (343)
T 2qe8_A 229 NLQLT--DAELG---------------------------SKIERYSEKPICDGISIDKDHNIYVGDLAHSA---IGVITS 276 (343)
T ss_dssp CTTCC--HHHHH---------------------------TTCEEEEECCSCSCEEECTTCCEEEEEGGGTE---EEEEET
T ss_pred CCCCC--hhhhh---------------------------cceEecccCCCCceEEECCCCCEEEEccCCCe---EEEEEC
Confidence 1100 00000 00000011236999999999999999998875 788888
Q ss_pred -CCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeee
Q psy4832 460 -TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQ 528 (770)
Q Consensus 460 -~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~ 528 (770)
+|++.+++... .+..|.+|+++++|.|||++...+++..+.
T Consensus 277 ~~G~~~~~~~~~----------------------------~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 277 ADRAYKLLVTDE----------------------------KLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp TTTEEEEEEECG----------------------------GGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred CCCCEEEEEECC----------------------------ceecCCeeEECCCCcEEEEeCccccccccc
Confidence 89877765321 256799999999999999998776664443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.7e-15 Score=156.04 Aligned_cols=224 Identities=17% Similarity=0.206 Sum_probs=161.5
Q ss_pred cccCceEEEEcCCCC-EEEEeC--ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCC
Q psy4832 178 RLLTPVALTSGPDGS-LYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLES 254 (770)
Q Consensus 178 ~l~~P~~la~~~dG~-lyv~d~--~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~ 254 (770)
.+..+.+++++++|+ ||++|. ++|.+++++|.+..+.. ....|.++++++ +|+||+++...++|.++
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~----~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~----- 112 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLD----ATAFTNGNAVDA-QQRLVHCEHGRRAITRS----- 112 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEE----SCSCEEEEEECT-TSCEEEEETTTTEEEEE-----
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeC----CCCccceeeECC-CCCEEEEECCCCEEEEE-----
Confidence 455688999999998 999987 59999999988655432 235689999997 89999999988999999
Q ss_pred ccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeC-------------------CCeEE
Q psy4832 255 VADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADG-------------------TNIRV 315 (770)
Q Consensus 255 ~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~-------------------~~Ir~ 315 (770)
+++|.++.++.... ...++.|.+|+++++|+|||+|. ..|++
T Consensus 113 --~~~g~~~~~~~~~~-----------------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~ 173 (305)
T 3dr2_A 113 --DADGQAHLLVGRYA-----------------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYR 173 (305)
T ss_dssp --CTTSCEEEEECEET-----------------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEE
T ss_pred --CCCCCEEEEEeccC-----------------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEE
Confidence 56677776653210 12367899999999999999873 12888
Q ss_pred ECC-CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEeC-------CEEEEEcCCCc-EE-
Q psy4832 316 VSP-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFIDD-------RVIFKLTNDLK-VK- 384 (770)
Q Consensus 316 id~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D~-------~~I~~i~~~G~-v~- 384 (770)
+++ .|.+..+. .+..|.+|+++| ++. |||+|. ++|++++.++. +.
T Consensus 174 ~d~~~g~~~~~~-----------------------~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~ 229 (305)
T 3dr2_A 174 LPPDGSPLQRMA-----------------------DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGALHD 229 (305)
T ss_dssp ECSSSCCCEEEE-----------------------EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTEEEE
T ss_pred EcCCCCcEEEEe-----------------------cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCCccC
Confidence 887 46665543 245799999999 775 999984 57888875422 11
Q ss_pred --EEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCc
Q psy4832 385 --IVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGR 462 (770)
Q Consensus 385 --~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~ 462 (770)
.+.. .....|.+|++|++|+||++..+ .|.+++++|+
T Consensus 230 ~~~~~~------------------------------------~~~~~pdgi~~d~~G~lwv~~~~-----gv~~~~~~g~ 268 (305)
T 3dr2_A 230 RRHFAS------------------------------------VPDGLPDGFCVDRGGWLWSSSGT-----GVCVFDSDGQ 268 (305)
T ss_dssp EEEEEC------------------------------------CSSSCCCSEEECTTSCEEECCSS-----EEEEECTTSC
T ss_pred CeEEEE------------------------------------CCCCCCCeEEECCCCCEEEecCC-----cEEEECCCCC
Confidence 1110 01235899999999999999832 3788999887
Q ss_pred EEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCC-cEEEEcCCCceEEee
Q psy4832 463 MFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDG-VVNVADQGSLHILAL 527 (770)
Q Consensus 463 i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG-~lyvaD~~~~~I~~i 527 (770)
.......+ ..|.++++++++ .|||+... .+.++
T Consensus 269 ~~~~~~~~------------------------------~~~~~~~f~~d~~~L~it~~~--~l~~~ 302 (305)
T 3dr2_A 269 LLGHIPTP------------------------------GTASNCTFDQAQQRLFITGGP--CLWML 302 (305)
T ss_dssp EEEEEECS------------------------------SCCCEEEECTTSCEEEEEETT--EEEEE
T ss_pred EEEEEECC------------------------------CceeEEEEeCCCCEEEEEcCC--eEEEE
Confidence 64433111 137788998876 68887653 45554
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-14 Score=154.36 Aligned_cols=266 Identities=18% Similarity=0.255 Sum_probs=160.6
Q ss_pred cccccCceEEEEcCCCCEEEEeC--ceEEEEcCC-CcEEEEeccC---cccccceeEEEEeCC---CCcEEEEeC--CCc
Q psy4832 176 DARLLTPVALTSGPDGSLYVGDF--NLVRRLTPE-GNVFTVLQLS---ATQVSYQYYLALSPA---DGHLYISDA--EKH 244 (770)
Q Consensus 176 ~~~l~~P~~la~~~dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~---~~~~~~p~~lav~p~---~g~lyvsd~--~~~ 244 (770)
...|..|++|+++|||.|||++. ++|++++++ |+...+.... ......+.+||++|. ++.|||+.+ ..+
T Consensus 28 a~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~ 107 (347)
T 3das_A 28 ATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDN 107 (347)
T ss_dssp ECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred ecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence 45688999999999999999997 699999875 6655443321 345678999999984 689999753 567
Q ss_pred EEEEEeccCCcc--CCCCcEEEEE-CCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeC-----------
Q psy4832 245 QILRVLSLESVA--DPSINWEVAV-GSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADG----------- 310 (770)
Q Consensus 245 ~I~~i~~~~~~~--~~~g~~~~va-G~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~----------- 310 (770)
+|.|+.....-. ..-...+++. +. |. ...+.+..|+++++|.|||+-.
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~-----p~-------------~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~ 169 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVFRGI-----PK-------------GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDR 169 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEEEEE-----CC-------------CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCT
T ss_pred EEEEEEeCCCCcccccCCCcEEEEEcC-----CC-------------CCCccCccccCCCCCCEEEEECCCCCCccccCC
Confidence 999986532100 0001122222 11 00 1134577899999999999943
Q ss_pred ----CCeEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeCC-----EEEEEcCCC
Q psy4832 311 ----TNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDR-----VIFKLTNDL 381 (770)
Q Consensus 311 ----~~Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~~-----~I~~i~~~G 381 (770)
+.|.+++++|.+.. + .|+. ....-...+.+|.+|+++| +|.||++|++ .|.++.+.+
T Consensus 170 ~~~~G~IlRi~~dG~ip~--~--------nPf~---~~~i~a~G~RNp~Gla~dp-~G~L~~~d~g~~~~deln~i~~G~ 235 (347)
T 3das_A 170 KSLGGKILRMTPDGEPAP--G--------NPFP---GSPVYSYGHRNVQGLAWDD-KQRLFASEFGQDTWDELNAIKPGD 235 (347)
T ss_dssp TCSTTCEEEECTTSSBCT--T--------CSST---TCCEEEBCCSBCCEEEECT-TCCEEEEECCSSSCEEEEEECTTC
T ss_pred CCCCCEEEEEeCCCCccC--C--------CCCC---CCeEEeeCCCCcceEEECC-CCCEEEEecCCCCCceeeEEcCCC
Confidence 22888888875411 0 0110 1122344688999999999 9999999952 455554332
Q ss_pred cEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCC
Q psy4832 382 KVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTG 461 (770)
Q Consensus 382 ~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G 461 (770)
. .|.|.... ....+ .+. ............|.||+|. +|.+|+++..+.+|.++.. +.++
T Consensus 236 n----yGwP~~~g--~~~~~------------~~~-~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~-~~~~ 294 (347)
T 3das_A 236 N----YGWPEAEG--KGGGS------------GFH-DPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPL-KGTA 294 (347)
T ss_dssp B----CCTTTCCS--SCCCT------------TCC-CCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEE-ETTE
T ss_pred E----ecCCcccC--CCCCc------------ccc-CCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEe-cCCc
Confidence 1 23322110 00000 000 0000011112479999996 6899999999988766533 2222
Q ss_pred cEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCC
Q psy4832 462 RMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQG 520 (770)
Q Consensus 462 ~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~ 520 (770)
. .+.. ..++. ..+.+|.+|+++|||.|||++..
T Consensus 295 ~----~~~~--------------------e~~l~--~~~gR~~dv~~~pDG~lyv~td~ 327 (347)
T 3das_A 295 A----AADP--------------------QAFLE--GEYGRLRTVAPAGGDKLWLVTSN 327 (347)
T ss_dssp E----SSCC--------------------EEEST--TTSSCEEEEEEEETTEEEEEECT
T ss_pred e----ecce--------------------EEeec--CCCCCccEEEECCCCcEEEEEcC
Confidence 1 1110 00111 12467999999999999999643
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.9e-15 Score=158.86 Aligned_cols=261 Identities=16% Similarity=0.151 Sum_probs=168.0
Q ss_pred ecCCCeEEECCCccEEeccc--CC--CeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCCEEEEeC------
Q psy4832 129 NFHEGILQKGDGSSLHLKHE--FP--RTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDF------ 198 (770)
Q Consensus 129 ~~~~gil~~~dG~~~~~~~~--~~--~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~------ 198 (770)
+.|+||.+..+| .+|++.. .. ..|..+. +|...++++.. ......|..|.+|++|++|.|||+|.
T Consensus 17 ~~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~-~g~~~~~p~~~---~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~ 91 (343)
T 2qe8_A 17 LAPGNITLTPDG-RLFLSLHQFYQPEMQVAELT-QDGLIPFPPQS---GNAIITFDTVLGIKSDGNGIVWMLDNGNQSKS 91 (343)
T ss_dssp SCEEEEEECTTS-CEEEEECGGGCCSCSEEEEE-TTEEEESCCCC---SSCCCCCSCEEEEEECSSSEEEEEECHHHHTS
T ss_pred CCcceEEECCCC-CEEEEeCCCCCCceEEEEEC-CCCeecCCCcc---cCcccceeEeeEEEEcCCCcEEEEcCCCCcCC
Confidence 489999999999 5787731 11 2566666 66655553211 11235788999999999999999995
Q ss_pred -ceEEEEcCC-CcEEEEeccCc---ccccceeEEEEeCCCCcEEEEeC---CCcEEEEEeccCCccCCCCcEEEEECCCc
Q psy4832 199 -NLVRRLTPE-GNVFTVLQLSA---TQVSYQYYLALSPADGHLYISDA---EKHQILRVLSLESVADPSINWEVAVGSGE 270 (770)
Q Consensus 199 -~~I~~i~~~-G~v~~~~~~~~---~~~~~p~~lav~p~~g~lyvsd~---~~~~I~~i~~~~~~~~~~g~~~~vaG~g~ 270 (770)
.+|.+++++ |++...+..+. .....|.+|++++.++.+||+|. .++.|++++. .++....+.....
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~------~~g~~~r~~~~~~ 165 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDL------QTGLAARVLQGYP 165 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEET------TTCCEEEECTTCT
T ss_pred CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEEC------CCCCEEEEecCCC
Confidence 489999975 88666554321 22356899999987789999999 7889999953 2355444432101
Q ss_pred cccCCCCCCcCCCccc--------ccccccCcceEEEccCCc-EEEEeCCC--eEEECC----CCcEEEeecCCCCCCCc
Q psy4832 271 RCIPGDETNCGDNGPA--------LAAKLSHPKGLAIKADKT-MFIADGTN--IRVVSP----EGIIHTLIGHHKHHNIW 335 (770)
Q Consensus 271 ~~~p~~~~~~g~~g~~--------~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id~----~G~i~t~~g~~~~~~~~ 335 (770)
.+.+....+.-++... .......|.||+++++|. ||+++... |++++. ++.+. .... +
T Consensus 166 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~----~~~~---~ 238 (343)
T 2qe8_A 166 GIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLT----DAEL---G 238 (343)
T ss_dssp TTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCC----HHHH---H
T ss_pred cccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCC----hhhh---h
Confidence 1111000000001000 000113589999999985 99998654 777763 22110 0000 0
Q ss_pred CCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcC-CCcEEEEecCCCCCCCCCCCCcccccccccccc
Q psy4832 336 SPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTN-DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKK 412 (770)
Q Consensus 336 ~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~-~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~ 412 (770)
. .. ........|.||++|+ +|+|||++ +++|.++++ +|++.+++..+
T Consensus 239 ~------~~-~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~---------------------- 288 (343)
T 2qe8_A 239 S------KI-ERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAYKLLVTDE---------------------- 288 (343)
T ss_dssp T------TC-EEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEEEEEEECG----------------------
T ss_pred c------ce-EecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCEEEEEECC----------------------
Confidence 0 00 0001123699999999 99999999 589999998 89877766321
Q ss_pred ccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCc
Q psy4832 413 STVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARK 450 (770)
Q Consensus 413 ~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~r 450 (770)
.+..|.+|+++++|.|||++...++
T Consensus 289 -------------~~~~p~~va~~~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 289 -------------KLSWTDSFNFGSDGYLYFDCNQLHH 313 (343)
T ss_dssp -------------GGSCEEEEEECTTSCEEEEECCGGG
T ss_pred -------------ceecCCeeEECCCCcEEEEeCcccc
Confidence 2467999999999999999987655
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-14 Score=153.35 Aligned_cols=198 Identities=16% Similarity=0.211 Sum_probs=141.0
Q ss_pred cceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc
Q psy4832 222 SYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA 301 (770)
Q Consensus 222 ~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~ 301 (770)
..|.++++++ +|+|||+|..+++|+++ ++++....++..+ ..|.+|++++
T Consensus 32 ~~pegia~~~-~g~lyv~d~~~~~I~~~-------d~~g~~~~~~~~~----------------------~~p~gia~~~ 81 (306)
T 2p4o_A 32 TFLENLASAP-DGTIFVTNHEVGEIVSI-------TPDGNQQIHATVE----------------------GKVSGLAFTS 81 (306)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEE-------CTTCCEEEEEECS----------------------SEEEEEEECT
T ss_pred CCcceEEECC-CCCEEEEeCCCCeEEEE-------CCCCceEEEEeCC----------------------CCceeEEEcC
Confidence 5799999997 88999999999999999 5677665554321 1489999999
Q ss_pred CCcEEEEeCC--C--eEEEC-CCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEE
Q psy4832 302 DKTMFIADGT--N--IRVVS-PEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVI 374 (770)
Q Consensus 302 ~G~lYvaD~~--~--Ir~id-~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I 374 (770)
+|+|||+|.. . |.+++ .+|.+..++... ....|.++++.+ ++.+|++| +++|
T Consensus 82 dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~--------------------~~~~~~g~~~~~-~~~~~v~d~~~g~i 140 (306)
T 2p4o_A 82 NGDLVATGWNADSIPVVSLVKSDGTVETLLTLP--------------------DAIFLNGITPLS-DTQYLTADSYRGAI 140 (306)
T ss_dssp TSCEEEEEECTTSCEEEEEECTTSCEEEEEECT--------------------TCSCEEEEEESS-SSEEEEEETTTTEE
T ss_pred CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC--------------------CccccCcccccC-CCcEEEEECCCCeE
Confidence 9999999954 3 77776 678887766431 134578898887 88899999 5899
Q ss_pred EEEcCCC-c--EEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCC-CEEEEeCCCCc
Q psy4832 375 FKLTNDL-K--VKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTG-DLYIADIDARK 450 (770)
Q Consensus 375 ~~i~~~G-~--v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G-~lyVaD~~~~r 450 (770)
+++++++ . +....+..... .....+..|+|| +++| .|||+|+.+++
T Consensus 141 ~~~d~~~~~~~v~~~~~~~~~~----------------------------~~~~~~~~pngi--s~dg~~lyv~d~~~~~ 190 (306)
T 2p4o_A 141 WLIDVVQPSGSIWLEHPMLARS----------------------------NSESVFPAANGL--KRFGNFLYVSNTEKML 190 (306)
T ss_dssp EEEETTTTEEEEEEECGGGSCS----------------------------STTCCSCSEEEE--EEETTEEEEEETTTTE
T ss_pred EEEeCCCCcEeEEEECCccccc----------------------------cccCCCCcCCCc--CcCCCEEEEEeCCCCE
Confidence 9999764 2 22222210000 011235679999 5665 59999999886
Q ss_pred eeeEEEEcCC--CcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeee
Q psy4832 451 VNALRVIDST--GRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQ 528 (770)
Q Consensus 451 i~~i~~i~~~--G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~ 528 (770)
|.+++.+ |.+ +.. .....+..|.+|+++++|.|||++..+++|.++.
T Consensus 191 ---I~~~~~~~~g~~----~~~------------------------~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~ 239 (306)
T 2p4o_A 191 ---LLRIPVDSTDKP----GEP------------------------EIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIA 239 (306)
T ss_dssp ---EEEEEBCTTSCB----CCC------------------------EEEEESCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred ---EEEEEeCCCCCC----Ccc------------------------EEEeccCCCCCeEECCCCCEEEEeCCCCeEEEEC
Confidence 5666654 321 000 0012245799999999999999999999999997
Q ss_pred cCC
Q psy4832 529 HYL 531 (770)
Q Consensus 529 ~~~ 531 (770)
+..
T Consensus 240 ~~G 242 (306)
T 2p4o_A 240 PDR 242 (306)
T ss_dssp TTC
T ss_pred CCC
Confidence 653
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-14 Score=150.46 Aligned_cols=226 Identities=12% Similarity=0.073 Sum_probs=159.6
Q ss_pred ccccCceEEEEcC-CCCEEEEeC--ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccC
Q psy4832 177 ARLLTPVALTSGP-DGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLE 253 (770)
Q Consensus 177 ~~l~~P~~la~~~-dG~lyv~d~--~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~ 253 (770)
..+..+.+.++++ ++.||++|. ++|.++++++.....+.. ...|.++++++ +|+||++. .+.|++++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~----~~~~~~i~~~~-dG~l~v~~--~~~l~~~d~-- 80 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTM----DAPVSSVALRQ-SGGYVATI--GTKFCALNW-- 80 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC----SSCEEEEEEBT-TSSEEEEE--TTEEEEEET--
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeC----CCceEEEEECC-CCCEEEEE--CCeEEEEEC--
Confidence 3455688999998 678999997 599999987654444432 24689999997 78899997 468999852
Q ss_pred CccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC-------------CeEEECCCC
Q psy4832 254 SVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT-------------NIRVVSPEG 320 (770)
Q Consensus 254 ~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~-------------~Ir~id~~G 320 (770)
.++.++.++.... ...++.|.+|++|++|+|||++.. .|++++++|
T Consensus 81 ----~~g~~~~~~~~~~-----------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g 139 (297)
T 3g4e_A 81 ----KEQSAVVLATVDN-----------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH 139 (297)
T ss_dssp ----TTTEEEEEEECCT-----------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS
T ss_pred ----CCCcEEEEEecCC-----------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC
Confidence 2455655543211 012457899999999999998731 288888888
Q ss_pred cEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEe--CCEEEEEc---CCCcEE---EEecCCC
Q psy4832 321 IIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID--DRVIFKLT---NDLKVK---IVAGIPL 391 (770)
Q Consensus 321 ~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~---~~G~v~---~vaG~~~ 391 (770)
.+..+.. .+..|++|+++| ++ .|||+| +++|++++ .+|.+. .++..+
T Consensus 140 ~~~~~~~----------------------~~~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~- 195 (297)
T 3g4e_A 140 HVKKYFD----------------------QVDISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE- 195 (297)
T ss_dssp CEEEEEE----------------------EESBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC-
T ss_pred CEEEEee----------------------ccccccceEEcC-CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC-
Confidence 7766442 256799999999 66 599999 58899887 456542 121100
Q ss_pred CCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCC-CcEEEeecCc
Q psy4832 392 HCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDST-GRMFDFAGRW 470 (770)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~-G~i~~~aG~~ 470 (770)
.....|.+|++|++|+|||+...+++ |.+++++ |++......+
T Consensus 196 ---------------------------------~~~~~p~g~~~d~~G~lwva~~~~~~---v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 196 ---------------------------------KEEQIPDGMCIDAEGKLWVACYNGGR---VIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp ---------------------------------GGGCEEEEEEEBTTSCEEEEEETTTE---EEEECTTTCCEEEEEECS
T ss_pred ---------------------------------CCCCCCCeeEECCCCCEEEEEcCCCE---EEEEcCCCceEEEEEECC
Confidence 01245999999999999999998775 7888986 8865443211
Q ss_pred cCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEc-CCC-cEEEEcCCC
Q psy4832 471 QSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVS-PDG-VVNVADQGS 521 (770)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~-~dG-~lyvaD~~~ 521 (770)
-..|.++++. ||+ .|||+....
T Consensus 240 -----------------------------~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 240 -----------------------------VDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp -----------------------------SSBEEEEEEESGGGCEEEEEEBCT
T ss_pred -----------------------------CCCceEEEEeCCCCCEEEEEcCCc
Confidence 1348899997 665 789987543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.7e-14 Score=146.00 Aligned_cols=193 Identities=17% Similarity=0.220 Sum_probs=141.9
Q ss_pred ccccceeEEEEeCCCCc-EEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceE
Q psy4832 219 TQVSYQYYLALSPADGH-LYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGL 297 (770)
Q Consensus 219 ~~~~~p~~lav~p~~g~-lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gI 297 (770)
..+..|.+++++| +|+ ||+++..+++|++++ +++....+... ...|.+|
T Consensus 25 ~~~~~~eg~~~d~-~g~~l~~~~~~~~~i~~~~-------~~~~~~~~~~~----------------------~~~~~~l 74 (296)
T 3e5z_A 25 DGFTWTEGPVYVP-ARSAVIFSDVRQNRTWAWS-------DDGQLSPEMHP----------------------SHHQNGH 74 (296)
T ss_dssp CCCSSEEEEEEEG-GGTEEEEEEGGGTEEEEEE-------TTSCEEEEESS----------------------CSSEEEE
T ss_pred cCCccccCCeEeC-CCCEEEEEeCCCCEEEEEE-------CCCCeEEEECC----------------------CCCccee
Confidence 3567899999998 555 999999999999994 44444444321 1258899
Q ss_pred EEccCCcEEEEeCCC--eEEECC-CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC---
Q psy4832 298 AIKADKTMFIADGTN--IRVVSP-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD--- 371 (770)
Q Consensus 298 avd~~G~lYvaD~~~--Ir~id~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~--- 371 (770)
+++++|+||+++... |.++++ +|.+..+..... ...+..|.+|++++ +|+|||+|.
T Consensus 75 ~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~-----------------~~~~~~~~~i~~d~-~G~l~vtd~~~g 136 (296)
T 3e5z_A 75 CLNKQGHLIACSHGLRRLERQREPGGEWESIADSFE-----------------GKKLNSPNDVCLAP-DGSLWFSDPTYG 136 (296)
T ss_dssp EECTTCCEEEEETTTTEEEEECSTTCCEEEEECEET-----------------TEECCCCCCEEECT-TSCEEEEECSHH
T ss_pred eECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccC-----------------CCCCCCCCCEEECC-CCCEEEECCccc
Confidence 999999999999763 999998 788876653210 12356799999999 999999862
Q ss_pred ----------------CEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEE
Q psy4832 372 ----------------RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAF 435 (770)
Q Consensus 372 ----------------~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giav 435 (770)
+.|++++++|++..+.+ .+..|.+|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~-------------------------------------~~~~~~gi~~ 179 (296)
T 3e5z_A 137 IDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIR-------------------------------------DRVKPNGLAF 179 (296)
T ss_dssp HHCGGGSSCCCCCSSSCEEEEECTTSCEEEEEC-------------------------------------CCSSEEEEEE
T ss_pred cccccccccccccCCCcEEEEECCCCCEEEeec-------------------------------------CCCCCccEEE
Confidence 48999998887766542 1345899999
Q ss_pred cCCCCEEEEeCCCCceeeEEEEc--CCCcE-E--EeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcC
Q psy4832 436 SPTGDLYIADIDARKVNALRVID--STGRM-F--DFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSP 510 (770)
Q Consensus 436 d~~G~lyVaD~~~~ri~~i~~i~--~~G~i-~--~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~ 510 (770)
+++|.+++++..+++| ++++ .+|.+ . .+. .. ....|.+|++++
T Consensus 180 s~dg~~lv~~~~~~~i---~~~~~~~~g~~~~~~~~~-~~----------------------------~~~~p~~i~~d~ 227 (296)
T 3e5z_A 180 LPSGNLLVSDTGDNAT---HRYCLNARGETEYQGVHF-TV----------------------------EPGKTDGLRVDA 227 (296)
T ss_dssp CTTSCEEEEETTTTEE---EEEEECSSSCEEEEEEEE-CC----------------------------SSSCCCSEEEBT
T ss_pred CCCCCEEEEeCCCCeE---EEEEECCCCcCcCCCeEe-eC----------------------------CCCCCCeEEECC
Confidence 9999977999988764 4444 35665 1 222 11 124588999999
Q ss_pred CCcEEEEcCCCceEEeeecC
Q psy4832 511 DGVVNVADQGSLHILALQHY 530 (770)
Q Consensus 511 dG~lyvaD~~~~~I~~i~~~ 530 (770)
+|.|||++ +++|.++.+.
T Consensus 228 ~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 228 GGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp TSCEEEEE--TTEEEEECTT
T ss_pred CCCEEEEc--CCeEEEECCC
Confidence 99999999 5677776553
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-13 Score=144.64 Aligned_cols=233 Identities=13% Similarity=0.159 Sum_probs=157.4
Q ss_pred ccCceEEEEcCCCCEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCC----cEEEEEec
Q psy4832 179 LLTPVALTSGPDGSLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEK----HQILRVLS 251 (770)
Q Consensus 179 l~~P~~la~~~dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~----~~I~~i~~ 251 (770)
+..|.+++++++|.||+++. +.|.+++++ |++..+.. .....|.+|+++| +|.||+++... +.|++++
T Consensus 44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d- 118 (333)
T 2dg1_A 44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV---SHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAAT- 118 (333)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE---CSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEEC-
T ss_pred CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee---CCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEe-
Confidence 45689999999999999876 589999976 55555442 1235699999997 88999999876 7899984
Q ss_pred cCCccCCCC-cEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC-------C-eEEECCCC-c
Q psy4832 252 LESVADPSI-NWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT-------N-IRVVSPEG-I 321 (770)
Q Consensus 252 ~~~~~~~~g-~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~-------~-Ir~id~~G-~ 321 (770)
+++ ....+..... ....|.+|+++++|++|+++.. . |+++++++ .
T Consensus 119 ------~~~~~~~~~~~~~~-------------------~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~ 173 (333)
T 2dg1_A 119 ------ENGDNLQDIIEDLS-------------------TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT 173 (333)
T ss_dssp ------TTSCSCEEEECSSS-------------------SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC
T ss_pred ------CCCCEEEEEEccCc-------------------cCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE
Confidence 333 2322221000 1236889999999999999863 2 88888764 5
Q ss_pred EEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe--CCEEEEEcC--CCc-EEEEecCCCCCCC
Q psy4832 322 IHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID--DRVIFKLTN--DLK-VKIVAGIPLHCRT 395 (770)
Q Consensus 322 i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D--~~~I~~i~~--~G~-v~~vaG~~~~~~~ 395 (770)
+..+.. .+..|.+++++| +|+ |||++ ++.|++++. +|. +..+......
T Consensus 174 ~~~~~~----------------------~~~~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~--- 227 (333)
T 2dg1_A 174 VTPIIQ----------------------NISVANGIALST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY--- 227 (333)
T ss_dssp EEEEEE----------------------EESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE---
T ss_pred EEEeec----------------------CCCcccceEECC-CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE---
Confidence 554431 244689999999 775 99998 478998885 443 3222100000
Q ss_pred CCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCC
Q psy4832 396 GDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKK 475 (770)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~ 475 (770)
.......|.+|++|++|+|||++..+++ |.+++++|+.........
T Consensus 228 ---------------------------~~~~~~~~~~i~~d~~G~l~v~~~~~~~---v~~~d~~g~~~~~~~~~~---- 273 (333)
T 2dg1_A 228 ---------------------------YFTGHEGPDSCCIDSDDNLYVAMYGQGR---VLVFNKRGYPIGQILIPG---- 273 (333)
T ss_dssp ---------------------------ECCSSSEEEEEEEBTTCCEEEEEETTTE---EEEECTTSCEEEEEECTT----
T ss_pred ---------------------------ecCCCCCCCceEECCCCCEEEEEcCCCE---EEEECCCCCEEEEEEcCC----
Confidence 0000135899999999999999987664 677888887544332110
Q ss_pred CcCCCCCcccccCccCcccccceecCCeeEEEEcCCC-cEEEEcCC
Q psy4832 476 NCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDG-VVNVADQG 520 (770)
Q Consensus 476 ~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG-~lyvaD~~ 520 (770)
...+.+..|.++++++|| .|||+...
T Consensus 274 -------------------~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 274 -------------------RDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp -------------------GGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred -------------------CccccccCcceEEECCCCCEEEEEeCc
Confidence 001224468999999986 78988654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.6e-13 Score=142.90 Aligned_cols=228 Identities=13% Similarity=0.152 Sum_probs=142.4
Q ss_pred ccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEE
Q psy4832 219 TQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLA 298 (770)
Q Consensus 219 ~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIa 298 (770)
.++..|.+|+++| +|.|||++.. ++|+++ +++|. +.+...... ...+..|.||+
T Consensus 26 ~~l~~P~~ia~~p-dG~l~V~e~~-g~I~~~-------d~~G~-~~~~~~~v~----------------~~g~~g~~gia 79 (354)
T 3a9g_A 26 SDLEVPWSIAPLG-GGRYLVTERP-GRLVLI-------SPSGK-KLVASFDVA----------------NVGEAGLLGLA 79 (354)
T ss_dssp CSCSCEEEEEEEE-TTEEEEEETT-TEEEEE-------CSSCE-EEEEECCCC----------------CSTTCSEEEEE
T ss_pred CCCCCCeEEEEcC-CCeEEEEeCC-CEEEEE-------eCCCc-eEeecccee----------------ecCCCceeeEE
Confidence 4688999999997 8999999987 899999 45666 555532100 01134689999
Q ss_pred EccC----CcEEEEeCC--------C-eEEECCCCc---E---EEeecCCCCCCCcCCCccCCCcccccccccCcceEEE
Q psy4832 299 IKAD----KTMFIADGT--------N-IRVVSPEGI---I---HTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLAL 359 (770)
Q Consensus 299 vd~~----G~lYvaD~~--------~-Ir~id~~G~---i---~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~ 359 (770)
++++ |.|||++.. + |.+++.++. + ..++.. .+ ......|.+|++
T Consensus 80 ~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~---------------~~--~~~~h~~~~l~~ 142 (354)
T 3a9g_A 80 LHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDG---------------IP--GAYIHNGGRIRF 142 (354)
T ss_dssp ECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEE---------------EE--CCSSCCCCCEEE
T ss_pred eCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEc---------------CC--CCCCcCCceEEE
Confidence 9996 899999863 3 777765542 2 222110 00 112446889999
Q ss_pred eCCCCeEEEEeC---------------CEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccc
Q psy4832 360 SPLDDSLHFIDD---------------RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASN 424 (770)
Q Consensus 360 d~~~g~lyv~D~---------------~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 424 (770)
+| +|.|||++. ++|+|++++|++ -.+.|... .....
T Consensus 143 ~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~--p~~npf~~--------------------------~~i~a 193 (354)
T 3a9g_A 143 GP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP--PADNPFPN--------------------------SPIWS 193 (354)
T ss_dssp CT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC--CTTSSSTT--------------------------CCEEE
T ss_pred CC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC--CCCCCCCC--------------------------CcEEE
Confidence 99 999999962 489999998853 11111100 00012
Q ss_pred cccCCeeEEEEcC-CCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCe
Q psy4832 425 MDLGSLTALAFSP-TGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSI 503 (770)
Q Consensus 425 ~~l~~P~giavd~-~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P 503 (770)
..+.+|.||++|+ +|.||++|...++...|..+.+.+. .|- ..|.-. |.+. + .......-...-..|
T Consensus 194 ~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~n----yGw-----p~~~g~-~~~~-~-~~~p~~~~~~~~~ap 261 (354)
T 3a9g_A 194 YGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGN----YGW-----PLATGK-AGRG-E-FVDPVIDTGSETWAP 261 (354)
T ss_dssp ECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCB----CCT-----TTCCSC-CCCT-T-SCCCSEECTTCCCCE
T ss_pred EccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCc----CCC-----CcccCC-CCCC-C-CcCCEeecCCCCcCC
Confidence 3467899999999 8999999998876555555543221 111 111100 0000 0 000000000112479
Q ss_pred eEEEE-------cCCCcEEEEcCCCceEEeeecC
Q psy4832 504 SALSV-------SPDGVVNVADQGSLHILALQHY 530 (770)
Q Consensus 504 ~giav-------~~dG~lyvaD~~~~~I~~i~~~ 530 (770)
.|+++ +.+|.+||++...++|+++...
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~ 295 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFG 295 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEEC
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEEC
Confidence 99999 4689999999999999988654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-13 Score=147.45 Aligned_cols=236 Identities=13% Similarity=0.179 Sum_probs=158.8
Q ss_pred cCCCeEEECCCccEEecccCCCeEEEEecc-CccCCccCCCCCcccccccccCceEEEEcCCCCEEEEe--CceEEEEcC
Q psy4832 130 FHEGILQKGDGSSLHLKHEFPRTVSVVMGT-GLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGD--FNLVRRLTP 206 (770)
Q Consensus 130 ~~~gil~~~dG~~~~~~~~~~~~i~~v~g~-G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d--~~~I~~i~~ 206 (770)
.+.++... +..+|+.....+.|.++... ++... .-..+..|.+|+++++|.|||++ .+.|.++++
T Consensus 45 ~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~----------~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~ 112 (328)
T 3dsm_A 45 VAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVG----------RITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINP 112 (328)
T ss_dssp CEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEE----------EEECCSSEEEEEEEETTEEEEEEBSCSEEEEEET
T ss_pred cceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEE----------EcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEEC
Confidence 45566653 44688877566788887643 33210 01234689999999999999999 369999997
Q ss_pred C-CcEEEEeccCc--ccccceeEEEEeCCCCcEEEEeCC-CcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCC
Q psy4832 207 E-GNVFTVLQLSA--TQVSYQYYLALSPADGHLYISDAE-KHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGD 282 (770)
Q Consensus 207 ~-G~v~~~~~~~~--~~~~~p~~lav~p~~g~lyvsd~~-~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~ 282 (770)
. +++...+..+. .+...|.+|+++ ++.|||++.+ .+.|.+++. .++.+......
T Consensus 113 ~t~~~~~~i~~g~~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~viD~------~t~~~~~~i~~-------------- 170 (328)
T 3dsm_A 113 KTYEITGYIECPDMDMESGSTEQMVQY--GKYVYVNCWSYQNRILKIDT------ETDKVVDELTI-------------- 170 (328)
T ss_dssp TTTEEEEEEECTTCCTTTCBCCCEEEE--TTEEEEEECTTCCEEEEEET------TTTEEEEEEEC--------------
T ss_pred CCCeEEEEEEcCCccccCCCcceEEEE--CCEEEEEcCCCCCEEEEEEC------CCCeEEEEEEc--------------
Confidence 5 56665544322 334589999995 8999999984 889999953 22333222211
Q ss_pred CcccccccccCcceEEEccCCcEEEEeCC-----------C-eEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccc
Q psy4832 283 NGPALAAKLSHPKGLAIKADKTMFIADGT-----------N-IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTA 349 (770)
Q Consensus 283 ~g~~~~a~l~~P~gIavd~~G~lYvaD~~-----------~-Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~ 349 (770)
-..|.+|+++++|.+|+++.. + |.++|+. +++...+....
T Consensus 171 --------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~------------------- 223 (328)
T 3dsm_A 171 --------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL------------------- 223 (328)
T ss_dssp --------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-------------------
T ss_pred --------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC-------------------
Confidence 125889999999999999764 3 8899875 66654332210
Q ss_pred cccCcceEEEeCCCCeEEEEeCCEEEEEcCC-CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccC
Q psy4832 350 QLQWPTGLALSPLDDSLHFIDDRVIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLG 428 (770)
Q Consensus 350 ~l~~P~gla~d~~~g~lyv~D~~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 428 (770)
-.+|.+|+++|.++.||+++. .|++++.+ +++. ..+.. .....
T Consensus 224 -g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~---~~~~~-------------------------------~~~~~ 267 (328)
T 3dsm_A 224 -GDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVP---VRPFL-------------------------------EFRDT 267 (328)
T ss_dssp -TCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCC---SSCSB-------------------------------CCCSS
T ss_pred -CCCceeEEEecCCCEEEEEcc-EEEEEECCCCcee---eeeee-------------------------------cCCCC
Confidence 126999999994556899887 88888854 4321 00000 00135
Q ss_pred CeeEEEEcC-CCCEEEEe----CCCCceeeEEEEcCCCcEEE
Q psy4832 429 SLTALAFSP-TGDLYIAD----IDARKVNALRVIDSTGRMFD 465 (770)
Q Consensus 429 ~P~giavd~-~G~lyVaD----~~~~ri~~i~~i~~~G~i~~ 465 (770)
.|.+|+++| +|.|||++ ..++ +|..++++|++..
T Consensus 268 ~p~gi~vdp~~g~lyva~~~~y~~~~---~V~v~d~~g~~~~ 306 (328)
T 3dsm_A 268 KYYGLTVNPNNGEVYVADAIDYQQQG---IVYRYSPQGKLID 306 (328)
T ss_dssp CEEEEEECTTTCCEEEEECTTSSSEE---EEEEECTTCCEEE
T ss_pred ceEEEEEcCCCCeEEEEcccccccCC---EEEEECCCCCEEE
Confidence 699999998 78999999 5554 5788898888544
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-13 Score=143.43 Aligned_cols=194 Identities=19% Similarity=0.266 Sum_probs=136.0
Q ss_pred ccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEE
Q psy4832 219 TQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLA 298 (770)
Q Consensus 219 ~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIa 298 (770)
.++..+.+++++|.++.||++|..+++|+++ +++|....+... -..|.+++
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~-------~~~g~~~~~~~~----------------------~~~~~gl~ 92 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGW-------REDGTVDVLLDA----------------------TAFTNGNA 92 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEE-------ETTSCEEEEEES----------------------CSCEEEEE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEE-------eCCCCEEEEeCC----------------------CCccceee
Confidence 3567889999998444599999999999999 456666554421 12588999
Q ss_pred EccCCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC-----
Q psy4832 299 IKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD----- 371 (770)
Q Consensus 299 vd~~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~----- 371 (770)
+|++|+||+++... |.+++++|.+..++.... ...++.|.+|++++ +|+|||+|.
T Consensus 93 ~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~-----------------~~~~~~~~~i~~d~-dG~l~~td~~~g~~ 154 (305)
T 3dr2_A 93 VDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYA-----------------GKRLNSPNDLIVAR-DGAIWFTDPPFGLR 154 (305)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTSCEEEEECEET-----------------TEECSCCCCEEECT-TSCEEEECCSGGGS
T ss_pred ECCCCCEEEEECCCCEEEEECCCCCEEEEEeccC-----------------CCccCCCCCEEECC-CCCEEEeCcCCCcc
Confidence 99999999998763 999999998877753211 12467899999999 999999862
Q ss_pred --------------CEEEEEcC-CCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEc
Q psy4832 372 --------------RVIFKLTN-DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFS 436 (770)
Q Consensus 372 --------------~~I~~i~~-~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd 436 (770)
+.|+++++ +|+++.+. .+..|++|+++
T Consensus 155 ~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--------------------------------------~~~~p~gl~~s 196 (305)
T 3dr2_A 155 KPSQGCPADPELAHHSVYRLPPDGSPLQRMA--------------------------------------DLDHPNGLAFS 196 (305)
T ss_dssp CGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--------------------------------------EESSEEEEEEC
T ss_pred ccccccccccccCCCeEEEEcCCCCcEEEEe--------------------------------------cCCCCcceEEc
Confidence 46888886 46655443 13458999999
Q ss_pred CCCC-EEEEeCCC-----CceeeEEEEcCCC-cEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEc
Q psy4832 437 PTGD-LYIADIDA-----RKVNALRVIDSTG-RMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVS 509 (770)
Q Consensus 437 ~~G~-lyVaD~~~-----~ri~~i~~i~~~G-~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~ 509 (770)
++|. |||+|... ++ |++++.++ .+.... . +. + .....|.+|+++
T Consensus 197 pdg~~lyv~~~~~~~~~~~~---i~~~~~~~~~l~~~~--~--------------~~----~------~~~~~pdgi~~d 247 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVE---ITAFAWRDGALHDRR--H--------------FA----S------VPDGLPDGFCVD 247 (305)
T ss_dssp TTSSEEEEEECCC---CCCE---EEEEEEETTEEEEEE--E--------------EE----C------CSSSCCCSEEEC
T ss_pred CCCCEEEEEecCCcCCCCCE---EEEEEecCCCccCCe--E--------------EE----E------CCCCCCCeEEEC
Confidence 9997 99999873 44 55554322 121100 0 00 0 012358899999
Q ss_pred CCCcEEEEcCCCceEEeee
Q psy4832 510 PDGVVNVADQGSLHILALQ 528 (770)
Q Consensus 510 ~dG~lyvaD~~~~~I~~i~ 528 (770)
++|+||+++. ..|.++.
T Consensus 248 ~~G~lwv~~~--~gv~~~~ 264 (305)
T 3dr2_A 248 RGGWLWSSSG--TGVCVFD 264 (305)
T ss_dssp TTSCEEECCS--SEEEEEC
T ss_pred CCCCEEEecC--CcEEEEC
Confidence 9999999972 2355443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.3e-14 Score=150.55 Aligned_cols=259 Identities=18% Similarity=0.198 Sum_probs=154.8
Q ss_pred eecCCCeEEECCCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCC----CCEEEEeC-----
Q psy4832 128 YNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPD----GSLYVGDF----- 198 (770)
Q Consensus 128 ~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~d----G~lyv~d~----- 198 (770)
|+.|.++....||. +|+++ ..+.|..+. +|....+.-. +.....+..|.+|+++|+ |.|||++.
T Consensus 30 l~~P~~ia~~pdG~-l~V~e-~~g~I~~i~-~g~~~~~~~~----~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~ 102 (352)
T 2ism_A 30 LEVPWALAFLPDGG-MLIAE-RPGRIRLFR-EGRLSTYAEL----SVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGG 102 (352)
T ss_dssp CSCEEEEEECTTSC-EEEEE-TTTEEEEEE-TTEEEEEEEC----CCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTS
T ss_pred CCCceEEEEcCCCe-EEEEe-CCCeEEEEE-CCCccEeecc----eEeecCCCCceeEEECCCCCCCCEEEEEEecCCCC
Confidence 66889999999995 89998 668888887 5553322100 011234678999999997 89999987
Q ss_pred --ceEEEEcCCCc----EEEEec-cC--cccccceeEEEEeCCCCcEEEEeCC-------------CcEEEEEeccCCcc
Q psy4832 199 --NLVRRLTPEGN----VFTVLQ-LS--ATQVSYQYYLALSPADGHLYISDAE-------------KHQILRVLSLESVA 256 (770)
Q Consensus 199 --~~I~~i~~~G~----v~~~~~-~~--~~~~~~p~~lav~p~~g~lyvsd~~-------------~~~I~~i~~~~~~~ 256 (770)
++|.|++.++. ...++. .+ ......|.+|+++| +|.|||++.. .++|+|+
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri------- 174 (352)
T 2ism_A 103 LRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRL------- 174 (352)
T ss_dssp SEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEE-------
T ss_pred CccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEE-------
Confidence 78999987642 223332 22 23456789999998 8899999742 2588888
Q ss_pred CCCCcEEEEECCCccccCCCCCCcCC---CcccccccccCcceEEEcc-CCcEEEEeCCC--eEEECCCCcEEEeecCCC
Q psy4832 257 DPSINWEVAVGSGERCIPGDETNCGD---NGPALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVSPEGIIHTLIGHHK 330 (770)
Q Consensus 257 ~~~g~~~~vaG~g~~~~p~~~~~~g~---~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~ 330 (770)
+++|.+ |..+.+.+. ........+.+|.||++|+ +|+||++|.+. ++. .+...|..+.....
T Consensus 175 ~~dG~~-----------p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~-~~~dei~~i~~G~n 242 (352)
T 2ism_A 175 TPEGEP-----------APGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQG-YGHDEVNLIVPGGN 242 (352)
T ss_dssp CTTSSB-----------CTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC-------CCCEEEEECTTCB
T ss_pred cCCCCC-----------CCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCC-CCCeEEEEeccCCc
Confidence 445431 111111111 1111223467899999999 89999999765 322 11123333321111
Q ss_pred CCCCcCCCc--c-CCCc--cccc-ccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCc--EEEEecCCCCCCCCCCCC
Q psy4832 331 HHNIWSPFN--C-HRSF--PAST-AQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLK--VKIVAGIPLHCRTGDKDK 400 (770)
Q Consensus 331 ~~~~~~p~~--~-~~~~--~~~~-~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~--v~~vaG~~~~~~~~~~~~ 400 (770)
.+ |.... + ..+. +... .....|.||++. +|+|||++ .++|++++.++. ...+ +...
T Consensus 243 yG--wp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~-~~~~--------- 308 (352)
T 2ism_A 243 YG--WPRVVGRGNDPRYRDPLYFWPQGFPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRV-LRVE--------- 308 (352)
T ss_dssp CC--TTTCCSCCCCTTSCCCSEECTTCCCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEE-EEEE---------
T ss_pred CC--CCcccCCCCCCCCcCCeEecCCCCCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceee-cchh---------
Confidence 11 11000 0 0000 1000 112468999995 89999999 579999875422 1000 0000
Q ss_pred ccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCC
Q psy4832 401 RDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDA 448 (770)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~ 448 (770)
.+ . ..+..|.+|+++|+|.|||++...
T Consensus 309 -------------------~~-~-~~~~rp~~v~~~pdG~lyv~~~~~ 335 (352)
T 2ism_A 309 -------------------TA-L-SGFGRLREVQVGPDGALYVTTSNR 335 (352)
T ss_dssp -------------------EE-E-ESSCCEEEEEECTTSCEEEEECST
T ss_pred -------------------ee-c-ccCCCeeEEEECCCCcEEEEEeCC
Confidence 00 0 124579999999999999999753
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-13 Score=144.22 Aligned_cols=201 Identities=13% Similarity=0.077 Sum_probs=144.4
Q ss_pred cccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceE
Q psy4832 218 ATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGL 297 (770)
Q Consensus 218 ~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gI 297 (770)
......+.+.+++|.++.||++|..+++|++++.. .+....+. . -..|.+|
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~------~~~~~~~~-~----------------------~~~~~~i 59 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSF------TKQVQRVT-M----------------------DAPVSSV 59 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETT------TCCEEEEE-C----------------------SSCEEEE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECC------CCcEEEEe-C----------------------CCceEEE
Confidence 45667899999998889999999999999999531 23332221 1 1257899
Q ss_pred EEccCCcEEEEeCCCeEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC-----
Q psy4832 298 AIKADKTMFIADGTNIRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD----- 371 (770)
Q Consensus 298 avd~~G~lYvaD~~~Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~----- 371 (770)
+++++|+||++....|.+++++ |.+..+..... ...+..|.++++++ +|+|||++.
T Consensus 60 ~~~~dG~l~v~~~~~l~~~d~~~g~~~~~~~~~~-----------------~~~~~~~~di~~d~-dG~l~~~~~~~~~~ 121 (297)
T 3g4e_A 60 ALRQSGGYVATIGTKFCALNWKEQSAVVLATVDN-----------------DKKNNRFNDGKVDP-AGRYFAGTMAEETA 121 (297)
T ss_dssp EEBTTSSEEEEETTEEEEEETTTTEEEEEEECCT-----------------TCSSEEEEEEEECT-TSCEEEEEEECCSB
T ss_pred EECCCCCEEEEECCeEEEEECCCCcEEEEEecCC-----------------CCCCCCCCCEEECC-CCCEEEecCCcccc
Confidence 9999999999985559999975 67766653211 01245689999999 999999871
Q ss_pred --------CEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCC-EE
Q psy4832 372 --------RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LY 442 (770)
Q Consensus 372 --------~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-ly 442 (770)
+.|++++++|++..+.. .+..|++|+++++|+ ||
T Consensus 122 ~~~~~~~~~~l~~~d~~g~~~~~~~-------------------------------------~~~~pngi~~spdg~~ly 164 (297)
T 3g4e_A 122 PAVLERHQGALYSLFPDHHVKKYFD-------------------------------------QVDISNGLDWSLDHKIFY 164 (297)
T ss_dssp TTBCCTTCEEEEEECTTSCEEEEEE-------------------------------------EESBEEEEEECTTSCEEE
T ss_pred cccccCCCcEEEEEECCCCEEEEee-------------------------------------ccccccceEEcCCCCEEE
Confidence 37999998887665442 135699999999997 99
Q ss_pred EEeCCCCceeeEEEEc-CCCcEEE---eecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEc
Q psy4832 443 IADIDARKVNALRVID-STGRMFD---FAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVAD 518 (770)
Q Consensus 443 VaD~~~~ri~~i~~i~-~~G~i~~---~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD 518 (770)
|+|+.+++|.++. ++ .+|.+.. ++... .....|.+|+++++|.|||++
T Consensus 165 v~~~~~~~i~~~~-~d~~~G~~~~~~~~~~~~---------------------------~~~~~p~g~~~d~~G~lwva~ 216 (297)
T 3g4e_A 165 YIDSLSYSVDAFD-YDLQTGQISNRRSVYKLE---------------------------KEEQIPDGMCIDAEGKLWVAC 216 (297)
T ss_dssp EEEGGGTEEEEEE-ECTTTCCEEEEEEEEECC---------------------------GGGCEEEEEEEBTTSCEEEEE
T ss_pred EecCCCCcEEEEe-ccCCCCcccCcEEEEECC---------------------------CCCCCCCeeEECCCCCEEEEE
Confidence 9999887653332 23 4666531 11000 012359999999999999999
Q ss_pred CCCceEEeeecC
Q psy4832 519 QGSLHILALQHY 530 (770)
Q Consensus 519 ~~~~~I~~i~~~ 530 (770)
..+++|.++.+.
T Consensus 217 ~~~~~v~~~d~~ 228 (297)
T 3g4e_A 217 YNGGRVIRLDPV 228 (297)
T ss_dssp ETTTEEEEECTT
T ss_pred cCCCEEEEEcCC
Confidence 888888888664
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-13 Score=144.18 Aligned_cols=240 Identities=13% Similarity=0.157 Sum_probs=163.5
Q ss_pred eeeecCCCeEEECCCccEEec-------ccCCCeEEEEe-ccCccCCccCCCCCcccccccccCceEEEEcCC-CCEEEE
Q psy4832 126 HHYNFHEGILQKGDGSSLHLK-------HEFPRTVSVVM-GTGLQRPLVCKDCDGVARDARLLTPVALTSGPD-GSLYVG 196 (770)
Q Consensus 126 ~~~~~~~gil~~~dG~~~~~~-------~~~~~~i~~v~-g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~d-G~lyv~ 196 (770)
..+..|+++++..+| .+|+. +...+.|..+. .+|....+.- +........|.+++++++ |.|||+
T Consensus 15 ~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-----~~~~~~~~~~~~i~~~~~~g~l~v~ 88 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-----PEVNGYGGIPAGCQCDRDANQLFVA 88 (314)
T ss_dssp CCCTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-----CEETTEECCEEEEEECSSSSEEEEE
T ss_pred ccCCCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-----cccCCCCCCCceEEEecCCCcEEEE
Confidence 345678888888888 46766 43566777775 3444332210 001112357999999999 999999
Q ss_pred eC-ceEEEEcCCCcEEEE-eccC-cccccceeEEEEeCCCCcEEEEeCCC---------------cEEEEEeccCCccCC
Q psy4832 197 DF-NLVRRLTPEGNVFTV-LQLS-ATQVSYQYYLALSPADGHLYISDAEK---------------HQILRVLSLESVADP 258 (770)
Q Consensus 197 d~-~~I~~i~~~G~v~~~-~~~~-~~~~~~p~~lav~p~~g~lyvsd~~~---------------~~I~~i~~~~~~~~~ 258 (770)
+. +.|.+++++|++..+ .... ......|.+|++++ +|+|||++... +.|+++ ++
T Consensus 89 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~ 160 (314)
T 1pjx_A 89 DMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCF-------TT 160 (314)
T ss_dssp ETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE-------CT
T ss_pred ECCCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEE-------CC
Confidence 97 589999988887766 4321 12346789999997 89999999865 688888 45
Q ss_pred CCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEc----cCC-cEEEEeCCC--eEEECC--CCcEEE---ee
Q psy4832 259 SINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK----ADK-TMFIADGTN--IRVVSP--EGIIHT---LI 326 (770)
Q Consensus 259 ~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd----~~G-~lYvaD~~~--Ir~id~--~G~i~t---~~ 326 (770)
++.+..+.. .+..|.+|+++ ++| .||+++..+ |++++. +|.+.. +.
T Consensus 161 ~g~~~~~~~----------------------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~ 218 (314)
T 1pjx_A 161 DGQMIQVDT----------------------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG 218 (314)
T ss_dssp TSCEEEEEE----------------------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEecc----------------------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEE
Confidence 566554431 13468899999 998 599998654 888874 454322 11
Q ss_pred cCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCC-CcEEEEecCCCCCCCCCCCCccc
Q psy4832 327 GHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTND-LKVKIVAGIPLHCRTGDKDKRDF 403 (770)
Q Consensus 327 g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~ 403 (770)
... ...+..|.+|++++ +|+|||++ ++.|.+++++ |++......+
T Consensus 219 ~~~------------------~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~------------- 266 (314)
T 1pjx_A 219 HIP------------------GTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCP------------- 266 (314)
T ss_dssp ECC------------------CCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECS-------------
T ss_pred ECC------------------CCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC-------------
Confidence 110 00114689999999 99999997 5899999987 6543222111
Q ss_pred cccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC
Q psy4832 404 KDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS 459 (770)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~ 459 (770)
...|.+++++++|+ |||++..++. |.+++.
T Consensus 267 -----------------------~~~~~~i~~~~dg~~l~v~~~~~~~---l~~~~~ 297 (314)
T 1pjx_A 267 -----------------------FEKPSNLHFKPQTKTIFVTEHENNA---VWKFEW 297 (314)
T ss_dssp -----------------------SSCEEEEEECTTSSEEEEEETTTTE---EEEEEC
T ss_pred -----------------------CCCceeEEECCCCCEEEEEeCCCCe---EEEEeC
Confidence 13589999999998 9999988765 445544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.2e-13 Score=141.58 Aligned_cols=230 Identities=15% Similarity=0.158 Sum_probs=155.9
Q ss_pred cCceEEEEcCCCCEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCcc
Q psy4832 180 LTPVALTSGPDGSLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVA 256 (770)
Q Consensus 180 ~~P~~la~~~dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~ 256 (770)
..|.+|+++ ++.+||+.. +.|.++|+. +++...+. ....|.+|++++ ++.|||++...+.|.+++.
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~----~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~----- 112 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT----GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINP----- 112 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE----CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEET-----
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC----CCCCCcEEEEeC-CCeEEEEECCCCeEEEEEC-----
Confidence 358999986 688999987 589999975 77765552 356799999986 6799999977789999953
Q ss_pred CCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC--C-eEEECCC-CcEEEeecCCCCC
Q psy4832 257 DPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT--N-IRVVSPE-GIIHTLIGHHKHH 332 (770)
Q Consensus 257 ~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~--~-Ir~id~~-G~i~t~~g~~~~~ 332 (770)
.++.+......+.. ..++..|.+|++ .++.|||++.+ + |.++|+. +++...+..+
T Consensus 113 -~t~~~~~~i~~g~~----------------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--- 171 (328)
T 3dsm_A 113 -KTYEITGYIECPDM----------------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG--- 171 (328)
T ss_dssp -TTTEEEEEEECTTC----------------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS---
T ss_pred -CCCeEEEEEEcCCc----------------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC---
Confidence 23443322211110 123457999999 47899999863 3 9999965 5554433221
Q ss_pred CCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC------------CEEEEEcCC-CcEEEEecCCCCCCCCCCC
Q psy4832 333 NIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD------------RVIFKLTND-LKVKIVAGIPLHCRTGDKD 399 (770)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~------------~~I~~i~~~-G~v~~vaG~~~~~~~~~~~ 399 (770)
..|.+|++++ +|++||++. +.|++|++. +++......+.
T Consensus 172 -------------------~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-------- 223 (328)
T 3dsm_A 172 -------------------IQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-------- 223 (328)
T ss_dssp -------------------SCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--------
T ss_pred -------------------CCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--------
Confidence 2588999999 999999983 579999965 66543322110
Q ss_pred CccccccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCc
Q psy4832 400 KRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNC 477 (770)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~ 477 (770)
-..|.+|+++|+|. ||+++. .|.++|. ++++.. ..
T Consensus 224 ---------------------------g~~p~~la~~~d~~~lyv~~~------~v~~~d~~t~~~~~---~~------- 260 (328)
T 3dsm_A 224 ---------------------------GDWPSEVQLNGTRDTLYWINN------DIWRMPVEADRVPV---RP------- 260 (328)
T ss_dssp ---------------------------TCCCEEEEECTTSCEEEEESS------SEEEEETTCSSCCS---SC-------
T ss_pred ---------------------------CCCceeEEEecCCCEEEEEcc------EEEEEECCCCceee---ee-------
Confidence 02489999999765 999886 3667776 344310 00
Q ss_pred CCCCCcccccCccCcccccceecCCeeEEEEcC-CCcEEEEc----CCCceEEeeec
Q psy4832 478 NTTNCAEFEKNSKETLLTSTARFTSISALSVSP-DGVVNVAD----QGSLHILALQH 529 (770)
Q Consensus 478 ~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~-dG~lyvaD----~~~~~I~~i~~ 529 (770)
... .....|.+|+++| +|.|||++ ..+++|.+++.
T Consensus 261 ---------------~~~--~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 261 ---------------FLE--FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp ---------------SBC--CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred ---------------eec--CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 000 0145799999999 88999999 56666555543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-12 Score=141.11 Aligned_cols=258 Identities=14% Similarity=0.109 Sum_probs=156.9
Q ss_pred ccCceEEEEcCCCCEEEEeC----ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccC
Q psy4832 179 LLTPVALTSGPDGSLYVGDF----NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLE 253 (770)
Q Consensus 179 l~~P~~la~~~dG~lyv~d~----~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~ 253 (770)
...|.+|+++|||.||+++. +.|+.++.+ |+...+.. .......|.+|+++|.+..||+++..++.|..++.
T Consensus 39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~-~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~-- 115 (347)
T 3hfq_A 39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNT-VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI-- 115 (347)
T ss_dssp CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEE-EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE--
T ss_pred cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeee-eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe--
Confidence 46789999999999999875 477777754 44332221 12234578999999855569999987787777753
Q ss_pred CccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEEC--CCCcEEEeecCC
Q psy4832 254 SVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVS--PEGIIHTLIGHH 329 (770)
Q Consensus 254 ~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id--~~G~i~t~~g~~ 329 (770)
+.+|....+...... +. ++........|.+++++++|.||+++... |+.++ .+|.+..+....
T Consensus 116 ---~~~g~~~~~~~~~~~---------~~-~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~ 182 (347)
T 3hfq_A 116 ---AADGALTLTDTVQHS---------GH-GPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT 182 (347)
T ss_dssp ---CTTSCEEEEEEEECC---------CC-CSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred ---CCCCCeeecceeecC---------CC-CCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE
Confidence 344554443321000 00 01011223468899999999999998754 66554 456655432110
Q ss_pred CCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe--CCEEEEEc--C-CCcEEEEecCCCCCCCCCCCCccc
Q psy4832 330 KHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID--DRVIFKLT--N-DLKVKIVAGIPLHCRTGDKDKRDF 403 (770)
Q Consensus 330 ~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D--~~~I~~i~--~-~G~v~~vaG~~~~~~~~~~~~~~~ 403 (770)
.. .-..|.+++++| +|+ ||+++ .+.|..++ . +|++..+........
T Consensus 183 ~~------------------~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~--------- 234 (347)
T 3hfq_A 183 ME------------------AGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPA--------- 234 (347)
T ss_dssp CC------------------TTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCT---------
T ss_pred cC------------------CCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCC---------
Confidence 00 012578999999 886 89987 46655555 3 365443321111000
Q ss_pred cccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCC
Q psy4832 404 KDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNC 482 (770)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~ 482 (770)
.......|.+++++|+|. ||+++..+++| .+..++.+|.+..+.....
T Consensus 235 -------------------~~~~~~~~~~i~~spdG~~l~v~~~~~~~v-~v~~~~~~g~~~~~~~~~~----------- 283 (347)
T 3hfq_A 235 -------------------DYTAHNGAAAIRLSHDGHFLYVSNRGYNTL-AVFAVTADGHLTLIQQIST----------- 283 (347)
T ss_dssp -------------------TCCSCCEEEEEEECTTSCEEEEEEETTTEE-EEEEECGGGCEEEEEEEEC-----------
T ss_pred -------------------CCCCCCcceeEEECCCCCEEEEEeCCCCEE-EEEEECCCCcEEEeEEEec-----------
Confidence 001124589999999998 88999877664 2334445565544331110
Q ss_pred cccccCccCcccccceecCCeeEEEEcCCCc-EEEEcCCCceEEee
Q psy4832 483 AEFEKNSKETLLTSTARFTSISALSVSPDGV-VNVADQGSLHILAL 527 (770)
Q Consensus 483 ~~~~~~~~d~~~~~~~~l~~P~giav~~dG~-lyvaD~~~~~I~~i 527 (770)
.-..|.+++++|||. ||+++..++.|..+
T Consensus 284 ----------------~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 284 ----------------EGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp ----------------SSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ----------------CCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 013488999999996 89998877776554
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.5e-11 Score=126.75 Aligned_cols=206 Identities=13% Similarity=0.108 Sum_probs=152.5
Q ss_pred CceEEEEcCCCCEEEEeCceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCC-CcEEEEEeccCCccCCC
Q psy4832 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAE-KHQILRVLSLESVADPS 259 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~-~~~I~~i~~~~~~~~~~ 259 (770)
.|.++++.|+|+|+++..+.|+.++++|++...+..+ .-.....+++.+ +|+++|++.. +++|+.+ +++
T Consensus 38 ~~~~~~~~pdG~ilvs~~~~V~~~d~~G~~~W~~~~~--~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~v-------d~~ 107 (276)
T 3no2_A 38 ECNSVAATKAGEILFSYSKGAKMITRDGRELWNIAAP--AGCEMQTARILP-DGNALVAWCGHPSTILEV-------NMK 107 (276)
T ss_dssp CCCEEEECTTSCEEEECBSEEEEECTTSCEEEEEECC--TTCEEEEEEECT-TSCEEEEEESTTEEEEEE-------CTT
T ss_pred CCcCeEECCCCCEEEeCCCCEEEECCCCCEEEEEcCC--CCccccccEECC-CCCEEEEecCCCCEEEEE-------eCC
Confidence 5788999999999997778999999999988777532 112456778886 8999999988 8899988 677
Q ss_pred CcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCC
Q psy4832 260 INWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSP 337 (770)
Q Consensus 260 g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p 337 (770)
|+...-.+.... ....+..|.+++++++|++++++..+ |..+|++|++.--++.+
T Consensus 108 Gk~l~~~~~~~~---------------~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~-------- 164 (276)
T 3no2_A 108 GEVLSKTEFETG---------------IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLS-------- 164 (276)
T ss_dssp SCEEEEEEECCS---------------CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEECS--------
T ss_pred CCEEEEEeccCC---------------CCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEECC--------
Confidence 875433321110 01234568899999999999998765 99999999876655432
Q ss_pred CccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCC-CcEEEEecCCCCCCCCCCCCcccccccccccccc
Q psy4832 338 FNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKST 414 (770)
Q Consensus 338 ~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (770)
.+|.++++.+ +|+++|++ +++|+.++++ |++..-.+....
T Consensus 165 --------------~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~---------------------- 207 (276)
T 3no2_A 165 --------------GTPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNANDI---------------------- 207 (276)
T ss_dssp --------------SCCCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS----------------------
T ss_pred --------------CCccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC----------------------
Confidence 2577888888 89999987 5799999988 987655542110
Q ss_pred ccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCc-------eeeEEEEcCCCcEE
Q psy4832 415 VQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARK-------VNALRVIDSTGRMF 464 (770)
Q Consensus 415 ~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~r-------i~~i~~i~~~G~i~ 464 (770)
....|..|.++++.++|++||+++.++. -.++..++++|++.
T Consensus 208 --------~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~ 256 (276)
T 3no2_A 208 --------EGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVV 256 (276)
T ss_dssp --------BSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEE
T ss_pred --------CCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEE
Confidence 0113677999999999999999975431 12477889999874
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-12 Score=142.99 Aligned_cols=165 Identities=23% Similarity=0.269 Sum_probs=106.6
Q ss_pred ccccCceEEEEcCCCCEEEEeCc--eEEEEcC-CCcEEEEeccCc-----ccccceeEEEEeCC---CCcEEEEeCC---
Q psy4832 177 ARLLTPVALTSGPDGSLYVGDFN--LVRRLTP-EGNVFTVLQLSA-----TQVSYQYYLALSPA---DGHLYISDAE--- 242 (770)
Q Consensus 177 ~~l~~P~~la~~~dG~lyv~d~~--~I~~i~~-~G~v~~~~~~~~-----~~~~~p~~lav~p~---~g~lyvsd~~--- 242 (770)
..|..|++|+++|+|+|||++.. +|++++. +|+...+..... .....+.+||++|. ++.|||+++.
T Consensus 24 ~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 24 SNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 35789999999999999999984 7999986 477766554321 13456779999986 8999999864
Q ss_pred ---------CcEEEEEeccCCccCCCCcEEEEE-CCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC-
Q psy4832 243 ---------KHQILRVLSLESVADPSINWEVAV-GSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT- 311 (770)
Q Consensus 243 ---------~~~I~~i~~~~~~~~~~g~~~~va-G~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~- 311 (770)
..+|.|+.....-... ...+++. +... ...+.+.+|+++++|.|||+-+.
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~-~~~~~i~~~~p~------------------~~~H~~~~l~f~pDG~Lyv~~Gd~ 164 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTL-EKPVDLLAGLPS------------------SKDHQSGRLVIGPDQKIYYTIGDQ 164 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEE-EEEEEEEEEECC------------------CSSCCEEEEEECTTSCEEEEECCT
T ss_pred CCCccccccccEEEEEEECCCCCCc-CCcEEEEEcCCC------------------CCCCCCCeEeECCCCeEEEEECCC
Confidence 4689888642110000 1122332 1100 11356899999999999998431
Q ss_pred ---------------------------------CeEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEE
Q psy4832 312 ---------------------------------NIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLA 358 (770)
Q Consensus 312 ---------------------------------~Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla 358 (770)
.|.+++++|.|. .. .|+..+.....-...+.+|.+|+
T Consensus 165 ~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip----~~------Npf~~~~~~ei~a~G~RNp~gla 234 (454)
T 1cru_A 165 GRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIP----KD------NPSFNGVVSHIYTLGHRNPQGLA 234 (454)
T ss_dssp TTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCC----TT------CCEETTEECSEEEBCCSEEEEEE
T ss_pred CCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCC----CC------CCCCCCCcceEEEECCCCcceEE
Confidence 166666666421 00 01100001122234578999999
Q ss_pred EeCCCCeEEEEeC
Q psy4832 359 LSPLDDSLHFIDD 371 (770)
Q Consensus 359 ~d~~~g~lyv~D~ 371 (770)
+++ +|.||++|+
T Consensus 235 ~dp-~G~L~~~d~ 246 (454)
T 1cru_A 235 FTP-NGKLLQSEQ 246 (454)
T ss_dssp ECT-TSCEEEEEE
T ss_pred ECC-CCCEEEEec
Confidence 999 899999994
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.8e-11 Score=126.05 Aligned_cols=264 Identities=16% Similarity=0.175 Sum_probs=170.0
Q ss_pred CCCeEEECCCccEEecccC------CCeEEEEecc-CccCCccCCCCCcccccccccCceEEEEcCCCC-EEEEeC--ce
Q psy4832 131 HEGILQKGDGSSLHLKHEF------PRTVSVVMGT-GLQRPLVCKDCDGVARDARLLTPVALTSGPDGS-LYVGDF--NL 200 (770)
Q Consensus 131 ~~gil~~~dG~~~~~~~~~------~~~i~~v~g~-G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~-lyv~d~--~~ 200 (770)
+.++.+..||..+|+.... .+.|..+... +.... .-..-..|.+++++++|. +|+++. +.
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~----------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~ 112 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ----------AIHNDLKPFGATINNTTQTLWFGNTVNSA 112 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEE----------EEEESSCCCSEEEETTTTEEEEEETTTTE
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE----------EEecCCCcceEEECCCCCEEEEEecCCCE
Confidence 4456777888888877633 3456666532 22110 000113588999999998 999987 58
Q ss_pred EEEEcC-CCcEEEEeccCcc------cccceeEEEEeCCCCcEEEEeC-CCcEEEEEeccCCccCCCCcEEEEECCCccc
Q psy4832 201 VRRLTP-EGNVFTVLQLSAT------QVSYQYYLALSPADGHLYISDA-EKHQILRVLSLESVADPSINWEVAVGSGERC 272 (770)
Q Consensus 201 I~~i~~-~G~v~~~~~~~~~------~~~~p~~lav~p~~g~lyvsd~-~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~ 272 (770)
|..++. +|++...+..... ...+|.+++++|.++.||+++. .+++|+.++. .++........
T Consensus 113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~------~~~~~~~~~~~---- 182 (353)
T 3vgz_A 113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDG------GNIKLKTAIQN---- 182 (353)
T ss_dssp EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEET------TTTEEEEEECC----
T ss_pred EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcC------CCCceEEEecC----
Confidence 999986 4777665543211 1235899999996677999984 4678998853 23333222210
Q ss_pred cCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC-eEEECC-CCcEEEeecCCCCCCCcCCCccCCCcccccc
Q psy4832 273 IPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN-IRVVSP-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTA 349 (770)
Q Consensus 273 ~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~-Ir~id~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~ 349 (770)
.-..|.+++++++|. ||+++..+ |..+|. ++++......+...
T Consensus 183 -----------------~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~----------------- 228 (353)
T 3vgz_A 183 -----------------TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDG----------------- 228 (353)
T ss_dssp -----------------CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSS-----------------
T ss_pred -----------------CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCC-----------------
Confidence 012488999999886 88888765 888885 45554433221110
Q ss_pred cccCcceEEEeCCCC-eEEEEe--CCEEEEEcC-CCcEEEEecCCCCCCCCCCCCccccccccccccccccCCccccccc
Q psy4832 350 QLQWPTGLALSPLDD-SLHFID--DRVIFKLTN-DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNM 425 (770)
Q Consensus 350 ~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~~-~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 425 (770)
....|.+++++| +| .||+++ .+.|+.++. ++++.....
T Consensus 229 ~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~------------------------------------- 270 (353)
T 3vgz_A 229 KEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRNGNILAKVA------------------------------------- 270 (353)
T ss_dssp SCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTTCCEEEEEE-------------------------------------
T ss_pred CCcccceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEE-------------------------------------
Confidence 123578999999 65 589998 478999985 455433221
Q ss_pred ccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCe
Q psy4832 426 DLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSI 503 (770)
Q Consensus 426 ~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P 503 (770)
+..|.+++++++|. ||+++..++. |..++. ++++...... -..|
T Consensus 271 -~~~~~~~~~s~dg~~l~v~~~~~~~---v~~~d~~~~~~~~~~~~------------------------------~~~~ 316 (353)
T 3vgz_A 271 -APESLAVLFNPARNEAYVTHRQAGK---VSVIDAKSYKVVKTFDT------------------------------PTHP 316 (353)
T ss_dssp -CSSCCCEEEETTTTEEEEEETTTTE---EEEEETTTTEEEEEEEC------------------------------CSEE
T ss_pred -cCCCceEEECCCCCEEEEEECCCCe---EEEEECCCCeEEEEEec------------------------------CCCC
Confidence 12356799999998 9999987764 666775 4654332211 1248
Q ss_pred eEEEEcCCCc-EEEEcCC
Q psy4832 504 SALSVSPDGV-VNVADQG 520 (770)
Q Consensus 504 ~giav~~dG~-lyvaD~~ 520 (770)
.+++++|||. ||++...
T Consensus 317 ~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 317 NSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEECTTSCEEEEEEEC
T ss_pred CeEEEcCCCCEEEEEEcc
Confidence 9999999996 8888654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=5.6e-11 Score=127.09 Aligned_cols=224 Identities=14% Similarity=0.126 Sum_probs=152.4
Q ss_pred cccCceEEEEcCC-CCEEEEeC--ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCC
Q psy4832 178 RLLTPVALTSGPD-GSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLES 254 (770)
Q Consensus 178 ~l~~P~~la~~~d-G~lyv~d~--~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~ 254 (770)
.+..|.+++++++ +.||++|. +.|.++++++.....+.. ...+.++++++ +|.+|++.. ..|++++.
T Consensus 47 ~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~----~~~v~~i~~~~-dg~l~v~~~--~gl~~~d~--- 116 (326)
T 2ghs_A 47 PMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL----PFMGSALAKIS-DSKQLIASD--DGLFLRDT--- 116 (326)
T ss_dssp CCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC----SSCEEEEEEEE-TTEEEEEET--TEEEEEET---
T ss_pred CCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEC----CCcceEEEEeC-CCeEEEEEC--CCEEEEEC---
Confidence 3455788999995 78999997 589999987655444432 13688999997 899999873 46888852
Q ss_pred ccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC--------CeEEECCCCcEEEee
Q psy4832 255 VADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT--------NIRVVSPEGIIHTLI 326 (770)
Q Consensus 255 ~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~--------~Ir~id~~G~i~t~~ 326 (770)
.++.+..+..... ......|.++++|++|++||++.. .|++++ +|.+..+.
T Consensus 117 ---~~g~~~~~~~~~~-----------------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~ 175 (326)
T 2ghs_A 117 ---ATGVLTLHAELES-----------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLF 175 (326)
T ss_dssp ---TTCCEEEEECSST-----------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEE
T ss_pred ---CCCcEEEEeeCCC-----------------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEee
Confidence 2456655542110 011346889999999999998742 288888 77766543
Q ss_pred cCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEe--CCEEEEEcC---CC-cE---EEEecCCCCCCCC
Q psy4832 327 GHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID--DRVIFKLTN---DL-KV---KIVAGIPLHCRTG 396 (770)
Q Consensus 327 g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~~---~G-~v---~~vaG~~~~~~~~ 396 (770)
. .+..|.+|++++ ++ .||+++ .+.|++++. +| .+ ..+...
T Consensus 176 ~----------------------~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~------- 225 (326)
T 2ghs_A 176 A----------------------DISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS------- 225 (326)
T ss_dssp E----------------------EESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC-------
T ss_pred C----------------------CCcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEEC-------
Confidence 1 234688999999 76 599998 478998884 34 31 111100
Q ss_pred CCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCC
Q psy4832 397 DKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKN 476 (770)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~ 476 (770)
......|.++++|++|+|||+...+++ |.+++++|++......+
T Consensus 226 ---------------------------~~~~~~p~gi~~d~~G~lwva~~~~~~---v~~~d~~g~~~~~i~~~------ 269 (326)
T 2ghs_A 226 ---------------------------TGIKGGMDGSVCDAEGHIWNARWGEGA---VDRYDTDGNHIARYEVP------ 269 (326)
T ss_dssp ---------------------------TTSSSEEEEEEECTTSCEEEEEETTTE---EEEECTTCCEEEEEECS------
T ss_pred ---------------------------CCCCCCCCeeEECCCCCEEEEEeCCCE---EEEECCCCCEEEEEECC------
Confidence 001235899999999999999987664 67788888754332111
Q ss_pred cCCCCCcccccCccCcccccceecCCeeEEEEc-CCC-cEEEEcCCC
Q psy4832 477 CNTTNCAEFEKNSKETLLTSTARFTSISALSVS-PDG-VVNVADQGS 521 (770)
Q Consensus 477 ~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~-~dG-~lyvaD~~~ 521 (770)
...|.+++++ +++ .|||+....
T Consensus 270 -----------------------~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 270 -----------------------GKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp -----------------------CSBEEEEEEESTTSCEEEEEEBCT
T ss_pred -----------------------CCCcEEEEEecCCCCEEEEEecCC
Confidence 1248899998 775 688886554
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-10 Score=123.86 Aligned_cols=236 Identities=17% Similarity=0.153 Sum_probs=138.6
Q ss_pred eEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCC--CcEEEEEeccCCccCCCCcEEEEECCCccccCCC
Q psy4832 200 LVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAE--KHQILRVLSLESVADPSINWEVAVGSGERCIPGD 276 (770)
Q Consensus 200 ~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~--~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~ 276 (770)
.|..++. +|+...+.. ......|.+|+++| +|.||+++.. ++.|+.++.. .+....+...
T Consensus 19 ~v~~~d~~tg~~~~~~~--~~~~~~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~------~g~~~~~~~~-------- 81 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGL--LAATQNPTYLALSA-KDCLYSVDKEDDEGGIAAWQID------GQTAHKLNTV-------- 81 (347)
T ss_dssp EEEEEETTTTEEEEEEE--EEECSCCCCEEECT-TCEEEEEEEETTEEEEEEEEEE------TTEEEEEEEE--------
T ss_pred EEEEEcCCCCeEEEeee--eeccCCcceEEEcc-CCeEEEEEecCCCceEEEEEec------CCcEEEeeee--------
Confidence 3666665 455543221 12346799999998 7779998863 5778777531 2333322210
Q ss_pred CCCcCCCcccccccccCcceEEEccCCc-EEEEeCC-C-eEEE--CCCCcEEEeecCCCCCCCcCCCccCCCcccccccc
Q psy4832 277 ETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGT-N-IRVV--SPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQL 351 (770)
Q Consensus 277 ~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~-~-Ir~i--d~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l 351 (770)
......|.+|+++++|. ||+++.. + |+.+ +.+|.+..+....... ..+......
T Consensus 82 -----------~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~----------~~p~~~~~~ 140 (347)
T 3hfq_A 82 -----------VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSG----------HGPRPEQDG 140 (347)
T ss_dssp -----------EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCC----------CCSSTTCSS
T ss_pred -----------ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCC----------CCCCccccC
Confidence 01133689999999997 8888843 3 5554 4566655433211100 000011124
Q ss_pred cCcceEEEeCCCCeEEEEe--CCEEEEEc--CCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCccccccccc
Q psy4832 352 QWPTGLALSPLDDSLHFID--DRVIFKLT--NDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDL 427 (770)
Q Consensus 352 ~~P~gla~d~~~g~lyv~D--~~~I~~i~--~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 427 (770)
..|.+++++| +|+||+++ .+.|+.++ .+|++..+...... .-
T Consensus 141 ~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~---------------------------------~g 186 (347)
T 3hfq_A 141 SHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTME---------------------------------AG 186 (347)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECC---------------------------------TT
T ss_pred CCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcC---------------------------------CC
Confidence 4688999999 88899998 46676665 35765543311000 01
Q ss_pred CCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeE
Q psy4832 428 GSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISA 505 (770)
Q Consensus 428 ~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~g 505 (770)
..|.+++++|+|. ||+++...++|. +..++. +|++..+....... ........|.+
T Consensus 187 ~~p~~~~~spdg~~l~v~~~~~~~v~-v~~~~~~~g~~~~~~~~~~~~---------------------~~~~~~~~~~~ 244 (347)
T 3hfq_A 187 FGPRHLVFSPDGQYAFLAGELSSQIA-SLKYDTQTGAFTQLGIVKTIP---------------------ADYTAHNGAAA 244 (347)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEE-EEEEETTTTEEEEEEEEESSC---------------------TTCCSCCEEEE
T ss_pred CCCceEEECCCCCEEEEEeCCCCEEE-EEEecCCCCceEEeeeeeecC---------------------CCCCCCCccee
Confidence 2488999999998 999998887653 333443 56654332111000 00011245899
Q ss_pred EEEcCCCc-EEEEcCCCceEEeeec
Q psy4832 506 LSVSPDGV-VNVADQGSLHILALQH 529 (770)
Q Consensus 506 iav~~dG~-lyvaD~~~~~I~~i~~ 529 (770)
++++|||. ||+++..++.|..+..
T Consensus 245 i~~spdG~~l~v~~~~~~~v~v~~~ 269 (347)
T 3hfq_A 245 IRLSHDGHFLYVSNRGYNTLAVFAV 269 (347)
T ss_dssp EEECTTSCEEEEEEETTTEEEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEE
Confidence 99999996 7899887777665543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.9e-11 Score=123.88 Aligned_cols=221 Identities=11% Similarity=0.030 Sum_probs=155.9
Q ss_pred CCCEEEEeC--ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEE
Q psy4832 190 DGSLYVGDF--NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAV 266 (770)
Q Consensus 190 dG~lyv~d~--~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~va 266 (770)
.|++++++. ++|..+++ +|++...+... ....+..++++| +|+++++ .+++|+.+ +++|.+.--.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~--~~~~~~~~~~~p-dG~ilvs--~~~~V~~~-------d~~G~~~W~~ 71 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLE--KGWECNSVAATK-AGEILFS--YSKGAKMI-------TRDGRELWNI 71 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECC--TTCCCCEEEECT-TSCEEEE--CBSEEEEE-------CTTSCEEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCC--ccCCCcCeEECC-CCCEEEe--CCCCEEEE-------CCCCCEEEEE
Confidence 356666655 58999998 89988776532 224688999997 8899995 35789988 5677654333
Q ss_pred CCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC-C--eEEECCCCcEEEeecCCCCCCCcCCCccCCC
Q psy4832 267 GSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT-N--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRS 343 (770)
Q Consensus 267 G~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~-~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~ 343 (770)
..+.. ....++.+.++|+++|++.. + |..++++|++..-++.....
T Consensus 72 ~~~~~--------------------~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~----------- 120 (276)
T 3no2_A 72 AAPAG--------------------CEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGI----------- 120 (276)
T ss_dssp ECCTT--------------------CEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSC-----------
T ss_pred cCCCC--------------------ccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCC-----------
Confidence 22110 02446778899999999876 5 88899999765444321100
Q ss_pred cccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCccc
Q psy4832 344 FPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVR 421 (770)
Q Consensus 344 ~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (770)
...+.+|.++++++ +|+++|++ +++|+.++++|++....+.+
T Consensus 121 ----~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~------------------------------- 164 (276)
T 3no2_A 121 ----ERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPNGQLLNSVKLS------------------------------- 164 (276)
T ss_dssp ----SSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTTSCEEEEEECS-------------------------------
T ss_pred ----CcccccccCceECC-CCCEEEEecCCCEEEEECCCCCEEEEEECC-------------------------------
Confidence 12345688899998 99999998 68999999999876655432
Q ss_pred ccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCC-CcEEEeecCccCCCCCcCCCCCcccccCccCcccccceec
Q psy4832 422 ASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDST-GRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARF 500 (770)
Q Consensus 422 a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~-G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l 500 (770)
..|.++++.++|+++|++..+++ |..++++ |++.--.+... ....+|
T Consensus 165 ------~~~~~~~~~~~g~~~v~~~~~~~---v~~~d~~tG~~~w~~~~~~-----------------------~~~~~l 212 (276)
T 3no2_A 165 ------GTPFSSAFLDNGDCLVACGDAHC---FVQLNLESNRIVRRVNAND-----------------------IEGVQL 212 (276)
T ss_dssp ------SCCCEEEECTTSCEEEECBTTSE---EEEECTTTCCEEEEEEGGG-----------------------SBSCCC
T ss_pred ------CCccceeEcCCCCEEEEeCCCCe---EEEEeCcCCcEEEEecCCC-----------------------CCCccc
Confidence 13677888999999999998875 7888987 98654332210 011246
Q ss_pred CCeeEEEEcCCCcEEEEcCCC
Q psy4832 501 TSISALSVSPDGVVNVADQGS 521 (770)
Q Consensus 501 ~~P~giav~~dG~lyvaD~~~ 521 (770)
..|.++++.++|.+||++...
T Consensus 213 ~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 213 FFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp SEEEEEEECTTSCEEEEEECT
T ss_pred cccccceEcCCCCEEEEeccC
Confidence 779999999999999998643
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-11 Score=133.54 Aligned_cols=268 Identities=13% Similarity=0.127 Sum_probs=155.6
Q ss_pred eeecCCCeEEECCCccEEecccCCCeEEEEeccCccC-CccCCCCCcccccccccCceEEEEcC----CCCEEEEeC---
Q psy4832 127 HYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQR-PLVCKDCDGVARDARLLTPVALTSGP----DGSLYVGDF--- 198 (770)
Q Consensus 127 ~~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~-~~~~~~~~g~~~~~~l~~P~~la~~~----dG~lyv~d~--- 198 (770)
.|+.|.++....||..+|+++ ..+.|.++..+|... .+.- -..........|.+|+++| +|.|||++.
T Consensus 16 ~l~~P~~i~~~pdG~~l~V~e-~~G~i~~~~~~g~~~~~~~~---~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~ 91 (353)
T 2g8s_A 16 KLDHPWALAFLPDNHGMLITL-RGGELRHWQAGKGLSAPLSG---VPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVG 91 (353)
T ss_dssp EESSEEEEEECSTTCCEEEEE-TTTEEEEEETTTEECCCCBS---CCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEEC
T ss_pred CCCCcEEEEEcCCCCEEEEEe-CCceEEEEeCCCceeeEecC---CcccccCCCCCceeEEECCCCCCCCEEEEEEeCCC
Confidence 477899999999996589998 678998887666532 1110 0000112234679999999 599999974
Q ss_pred ------ceEEEEcCCC---cE---EEEec-cCc--ccccceeEEEEeCCCCcEEEEeCC-------------CcEEEEEe
Q psy4832 199 ------NLVRRLTPEG---NV---FTVLQ-LSA--TQVSYQYYLALSPADGHLYISDAE-------------KHQILRVL 250 (770)
Q Consensus 199 ------~~I~~i~~~G---~v---~~~~~-~~~--~~~~~p~~lav~p~~g~lyvsd~~-------------~~~I~~i~ 250 (770)
++|.|++.++ ++ ..++. .+. .....+.+|+++| +|.|||+... .++|+|++
T Consensus 92 ~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 92 DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLT 170 (353)
T ss_dssp SSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred CCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence 3788876432 22 22332 221 2345588999998 8999999643 35899994
Q ss_pred ccCCccCCCCcEEEEECCCccccCCCCCCcCCC---cccccccccCcceEEEcc-CCcEEEEeCCC-----eEEECCCCc
Q psy4832 251 SLESVADPSINWEVAVGSGERCIPGDETNCGDN---GPALAAKLSHPKGLAIKA-DKTMFIADGTN-----IRVVSPEGI 321 (770)
Q Consensus 251 ~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~---g~~~~a~l~~P~gIavd~-~G~lYvaD~~~-----Ir~id~~G~ 321 (770)
++|.+ |.++.+.+.. .......+.+|.||++|+ +|.||++|.+. |.++.+.+.
T Consensus 171 -------~dG~~-----------p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~n 232 (353)
T 2g8s_A 171 -------DQGEI-----------PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKN 232 (353)
T ss_dssp -------TTSCC-----------CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCB
T ss_pred -------CCCCC-----------CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCc
Confidence 44431 1111121111 111223467899999999 89999999763 444433221
Q ss_pred EEEeecCCCC--CCCcCCCccCC----Ccc-cccc-----cccCcceEEEeC------CCCeEEEEe--CCEEEEEcCCC
Q psy4832 322 IHTLIGHHKH--HNIWSPFNCHR----SFP-ASTA-----QLQWPTGLALSP------LDDSLHFID--DRVIFKLTNDL 381 (770)
Q Consensus 322 i~t~~g~~~~--~~~~~p~~~~~----~~~-~~~~-----~l~~P~gla~d~------~~g~lyv~D--~~~I~~i~~~G 381 (770)
. |-... ...|.+..+.. ..+ .... ....|.|+++.. .+|.|||+| .++|++++.++
T Consensus 233 y----Gwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~ 308 (353)
T 2g8s_A 233 Y----GWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNG 308 (353)
T ss_dssp C----CTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEET
T ss_pred C----CCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCC
Confidence 0 10000 00011111100 000 0000 113689999974 158999999 68999988543
Q ss_pred -cEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEE-eCCCCceeeE
Q psy4832 382 -KVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIA-DIDARKVNAL 454 (770)
Q Consensus 382 -~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVa-D~~~~ri~~i 454 (770)
.+.... . + ....+..|.+|+++|+|.|||+ |..+++|.||
T Consensus 309 ~~~~~~~--~------------------------------~-~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~ri 350 (353)
T 2g8s_A 309 DKVTEDG--R------------------------------I-LTDRGQRIRDVRTGPDGYLYVLTDESSGELLKV 350 (353)
T ss_dssp TEEEEEE--E------------------------------E-SGGGCCCEEEEEECTTSCEEEEECSTTEEEEEE
T ss_pred CeEeeeE--E------------------------------c-ccCCCCceeEEEECCCCcEEEEEeCCCCEEEEE
Confidence 221100 0 0 0112357999999999999997 5566665444
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.6e-11 Score=128.20 Aligned_cols=232 Identities=16% Similarity=0.194 Sum_probs=150.2
Q ss_pred cCCCeEEECCCccEEecccCCCeEEEEeccC-ccCCccCCCCCcccccccccCceEEEEcCCCCEEEEeC------ceEE
Q psy4832 130 FHEGILQKGDGSSLHLKHEFPRTVSVVMGTG-LQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDF------NLVR 202 (770)
Q Consensus 130 ~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G-~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~------~~I~ 202 (770)
.++++.+..+|. +|+.+...+.|..+...+ ....+. ...-..|.+|+++++|.|||++. +.|.
T Consensus 46 ~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~~---------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 46 QLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPF---------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp CEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEE---------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred cccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEEe---------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 456778888885 776654566777775432 222110 01124699999999999999986 3799
Q ss_pred EEcCCCcE-EEEeccCcccccceeEEEEeCCCCcEEEEeCC------CcEEEEEeccCCccCCCC-cEEEEECCCccccC
Q psy4832 203 RLTPEGNV-FTVLQLSATQVSYQYYLALSPADGHLYISDAE------KHQILRVLSLESVADPSI-NWEVAVGSGERCIP 274 (770)
Q Consensus 203 ~i~~~G~v-~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~------~~~I~~i~~~~~~~~~~g-~~~~vaG~g~~~~p 274 (770)
++++++.. ..++.. ......|.+++++| +|.+|+++.. ...|++++ +++ .+..+..
T Consensus 116 ~~d~~~~~~~~~~~~-~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~------- 179 (333)
T 2dg1_A 116 AATENGDNLQDIIED-LSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVS-------PDFRTVTPIIQ------- 179 (333)
T ss_dssp EECTTSCSCEEEECS-SSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEEC-------TTSCCEEEEEE-------
T ss_pred EEeCCCCEEEEEEcc-CccCCcccceEECC-CCCEEEEeccccccCCCceEEEEe-------CCCCEEEEeec-------
Confidence 99987643 334321 12345789999997 8999999875 46888883 432 4433321
Q ss_pred CCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEECC--CCc-EEEeecCCCCCCCcCCCccCCCccccc
Q psy4832 275 GDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVSP--EGI-IHTLIGHHKHHNIWSPFNCHRSFPAST 348 (770)
Q Consensus 275 ~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id~--~G~-i~t~~g~~~~~~~~~p~~~~~~~~~~~ 348 (770)
.+..|.+|+++++|. ||+++..+ |++++. +|. +..+..... ...
T Consensus 180 ---------------~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~---------------~~~ 229 (333)
T 2dg1_A 180 ---------------NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP---------------YYF 229 (333)
T ss_dssp ---------------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE---------------EEC
T ss_pred ---------------CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEE---------------Eec
Confidence 134688999999986 99998643 888775 443 332210000 000
Q ss_pred ccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccc
Q psy4832 349 AQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMD 426 (770)
Q Consensus 349 ~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 426 (770)
.....|.+|++++ +|+|||++ ++.|++++++|+.......+.. ....
T Consensus 230 ~~~~~~~~i~~d~-~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~------------------------------~~g~ 278 (333)
T 2dg1_A 230 TGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNKRGYPIGQILIPGR------------------------------DEGH 278 (333)
T ss_dssp CSSSEEEEEEEBT-TCCEEEEEETTTEEEEECTTSCEEEEEECTTG------------------------------GGTC
T ss_pred CCCCCCCceEECC-CCCEEEEEcCCCEEEEECCCCCEEEEEEcCCC------------------------------cccc
Confidence 0123689999999 99999998 6899999998875433322110 0112
Q ss_pred cCCeeEEEEcCCC-CEEEEeCCC
Q psy4832 427 LGSLTALAFSPTG-DLYIADIDA 448 (770)
Q Consensus 427 l~~P~giavd~~G-~lyVaD~~~ 448 (770)
+..|.+++++++| .|||+....
T Consensus 279 ~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 279 MLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp SCBCCEEEECTTSCEEEEEEECG
T ss_pred ccCcceEEECCCCCEEEEEeCcc
Confidence 3468999999986 699988763
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-09 Score=116.83 Aligned_cols=241 Identities=14% Similarity=0.163 Sum_probs=156.9
Q ss_pred cCceEEEEcCCC-CEEEEeC--------ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEE
Q psy4832 180 LTPVALTSGPDG-SLYVGDF--------NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRV 249 (770)
Q Consensus 180 ~~P~~la~~~dG-~lyv~d~--------~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i 249 (770)
..|.+++++|+| .||+++. +.|.+++.+ +++...+.. ...|.+++++|.++.+|+++...+.|..+
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN----DLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE----SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec----CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 468899999987 5888883 479999964 666665542 23489999998555699999998999999
Q ss_pred eccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeC--CC-eEEECCC-CcEEE
Q psy4832 250 LSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADG--TN-IRVVSPE-GIIHT 324 (770)
Q Consensus 250 ~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~--~~-Ir~id~~-G~i~t 324 (770)
+. .++........+.. .. ........|.+++++++|. ||+++. .. |+++|.. +++..
T Consensus 117 d~------~~~~~~~~~~~~~~-------~~-----~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~ 178 (353)
T 3vgz_A 117 DA------KTGEVKGRLVLDDR-------KR-----TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT 178 (353)
T ss_dssp ET------TTCCEEEEEESCCC-------CC-----CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE
T ss_pred eC------CCCeeEEEEecCCC-------cc-----ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE
Confidence 53 23443322221110 00 0001122488999999887 899883 23 8888864 55444
Q ss_pred eecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe-CCEEEEEcC-CCcEEEEecCCCCCCCCCCCCcc
Q psy4832 325 LIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID-DRVIFKLTN-DLKVKIVAGIPLHCRTGDKDKRD 402 (770)
Q Consensus 325 ~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D-~~~I~~i~~-~G~v~~vaG~~~~~~~~~~~~~~ 402 (770)
.+... -..|.+++++|.+..||+++ ++.|+.++. ++++......+..
T Consensus 179 ~~~~~---------------------~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~---------- 227 (353)
T 3vgz_A 179 AIQNT---------------------GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDD---------- 227 (353)
T ss_dssp EECCC---------------------CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCS----------
T ss_pred EecCC---------------------CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC----------
Confidence 33211 12478999999334588888 578989984 4554433321110
Q ss_pred ccccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCC
Q psy4832 403 FKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTT 480 (770)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~ 480 (770)
.....|.+++++|+|. ||+++...+. |..++. ++++.....
T Consensus 228 ----------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~---v~~~d~~~~~~~~~~~------------ 270 (353)
T 3vgz_A 228 ----------------------GKEHFFINISLDTARQRAFITDSKAAE---VLVVDTRNGNILAKVA------------ 270 (353)
T ss_dssp ----------------------SSCCCEEEEEEETTTTEEEEEESSSSE---EEEEETTTCCEEEEEE------------
T ss_pred ----------------------CCCcccceEEECCCCCEEEEEeCCCCE---EEEEECCCCcEEEEEE------------
Confidence 0123588999999987 9999987664 666775 555433221
Q ss_pred CCcccccCccCcccccceecCCeeEEEEcCCCc-EEEEcCCCceEEeeec
Q psy4832 481 NCAEFEKNSKETLLTSTARFTSISALSVSPDGV-VNVADQGSLHILALQH 529 (770)
Q Consensus 481 ~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~-lyvaD~~~~~I~~i~~ 529 (770)
+..|.+++++|+|. +|+++..++.|..++.
T Consensus 271 -------------------~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 271 -------------------APESLAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp -------------------CSSCCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred -------------------cCCCceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 12356799999997 8999987777776654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.7e-11 Score=127.46 Aligned_cols=204 Identities=16% Similarity=0.187 Sum_probs=133.1
Q ss_pred cceeEEEEeCCCCcEEEEe------------CCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccc
Q psy4832 222 SYQYYLALSPADGHLYISD------------AEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAA 289 (770)
Q Consensus 222 ~~p~~lav~p~~g~lyvsd------------~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a 289 (770)
..|.+|+++| +|.+|++. ...++|++++.. ++++....+.-.+.. + ...
T Consensus 50 ~G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~----~~~~~~~~l~~~g~~-------~-------~~~ 110 (355)
T 3sre_A 50 NGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLN----EKEPAVSELEIIGNT-------L-------DIS 110 (355)
T ss_dssp SCCCEEEECT-TSEEEEEECCC-----------CCEEEEEETT----SSSCCEEECEEECSS-------C-------CGG
T ss_pred CCcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecC----CCCCceEEEEccCCC-------C-------CcC
Confidence 5689999987 89999986 246788888542 122344433321100 0 011
Q ss_pred cccCcceEEEcc--CC--cEEEEeCCC------eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEE
Q psy4832 290 KLSHPKGLAIKA--DK--TMFIADGTN------IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLAL 359 (770)
Q Consensus 290 ~l~~P~gIavd~--~G--~lYvaD~~~------Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~ 359 (770)
.| .|.||.+.+ +| .|||++... |.++++++...+++..-. ...|+.|+++++
T Consensus 111 ~f-~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~-----------------g~~~~~pND~~v 172 (355)
T 3sre_A 111 SF-NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR-----------------HKLLPSVNDIVA 172 (355)
T ss_dssp GC-CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC-----------------CTTCSSEEEEEE
T ss_pred ce-eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc-----------------cCCCCCCceEEE
Confidence 12 799999965 45 599998662 777888876666553311 125889999999
Q ss_pred eCCCCeEEEEeC-------------------CEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcc
Q psy4832 360 SPLDDSLHFIDD-------------------RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420 (770)
Q Consensus 360 d~~~g~lyv~D~-------------------~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (770)
++ +|.+||++. ++|+++++. +++.++
T Consensus 173 ~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~-~~~~~~--------------------------------- 217 (355)
T 3sre_A 173 VG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-DVRVVA--------------------------------- 217 (355)
T ss_dssp EE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT-CCEEEE---------------------------------
T ss_pred eC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC-eEEEee---------------------------------
Confidence 99 999999863 357777663 444333
Q ss_pred cccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCccccccee
Q psy4832 421 RASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTAR 499 (770)
Q Consensus 421 ~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 499 (770)
..+..|+||+++|+|. |||+|+..++|.+. .++.+|.+.... . | . .
T Consensus 218 ----~~l~~pNGia~spDg~~lYvadt~~~~I~~~-~~~~~g~l~~~~--~--------------~---------~---~ 264 (355)
T 3sre_A 218 ----EGFDFANGINISPDGKYVYIAELLAHKIHVY-EKHANWTLTPLR--V--------------L---------S---F 264 (355)
T ss_dssp ----EEESSEEEEEECTTSSEEEEEEGGGTEEEEE-EECTTSCEEEEE--E--------------E---------E---C
T ss_pred ----cCCcccCcceECCCCCEEEEEeCCCCeEEEE-EECCCCcEecCE--E--------------E---------e---C
Confidence 2357799999999985 99999998875433 234567653311 0 0 0 0
Q ss_pred cCCeeEEEEcC-CCcEEEEcC-CCceEEeeecC
Q psy4832 500 FTSISALSVSP-DGVVNVADQ-GSLHILALQHY 530 (770)
Q Consensus 500 l~~P~giav~~-dG~lyvaD~-~~~~I~~i~~~ 530 (770)
-..|.|+++|+ +|.||++.. +..+|.++.+.
T Consensus 265 ~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 265 DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp SSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred CCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 13599999999 599999764 55677777554
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-10 Score=121.45 Aligned_cols=227 Identities=17% Similarity=0.183 Sum_probs=136.8
Q ss_pred cccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceE
Q psy4832 218 ATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGL 297 (770)
Q Consensus 218 ~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gI 297 (770)
+..+..|.+|++.| +|.|||++...++|++++. .++..+.+.+.... .. .....|.||
T Consensus 28 a~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~------~~g~~~~v~~~~~v------~~---------~g~~GllGi 85 (347)
T 3das_A 28 ATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDA------KTGRKTELGEVPGV------SP---------SGEGGLLGI 85 (347)
T ss_dssp ECCCSSEEEEEECT-TSCEEEEETTTCEEEEECT------TTCCEEEEEECTTC------CC---------BTTBSEEEE
T ss_pred ecCCCCceEEEEcC-CCcEEEEEecCCEEEEEEC------CCCcEeeecccCce------ee---------cCCCCceee
Confidence 45788999999998 8999999998899999942 23555555432211 01 113468899
Q ss_pred EEcc----CCcEEEEeC---CC-eEEECCCC---------cEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEe
Q psy4832 298 AIKA----DKTMFIADG---TN-IRVVSPEG---------IIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS 360 (770)
Q Consensus 298 avd~----~G~lYvaD~---~~-Ir~id~~G---------~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d 360 (770)
|+++ +|.|||+.+ .+ |.++..++ ...+++-. .+ .....++..|+++
T Consensus 86 a~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~---------------~p--~~~~H~g~~l~fg 148 (347)
T 3das_A 86 ALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRG---------------IP--KGVIHNGGRIAFG 148 (347)
T ss_dssp EECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEE---------------EC--CCSSCCCCCEEEC
T ss_pred EeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEc---------------CC--CCCCccCccccCC
Confidence 9997 488999753 22 66664332 11111100 00 0123457789999
Q ss_pred CCCCeEEEEe---------------CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCccccccc
Q psy4832 361 PLDDSLHFID---------------DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNM 425 (770)
Q Consensus 361 ~~~g~lyv~D---------------~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 425 (770)
| +|.|||+. .++|+||+++|.+ -.+.|... ......
T Consensus 149 p-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i--p~~nPf~~--------------------------~~i~a~ 199 (347)
T 3das_A 149 P-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP--APGNPFPG--------------------------SPVYSY 199 (347)
T ss_dssp T-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB--CTTCSSTT--------------------------CCEEEB
T ss_pred C-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc--cCCCCCCC--------------------------CeEEee
Confidence 9 99999993 2689999999863 11111100 001223
Q ss_pred ccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceec----C
Q psy4832 426 DLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARF----T 501 (770)
Q Consensus 426 ~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l----~ 501 (770)
.+.+|.||+++++|.||++|.+......|..+.+.+. .| ...|... +. ..........+ .
T Consensus 200 G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~n----yG-----wP~~~g~-~~------~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 200 GHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDN----YG-----WPEAEGK-GG------GSGFHDPVAQWSTDEA 263 (347)
T ss_dssp CCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCB----CC-----TTTCCSS-CC------CTTCCCCSEEECTTTC
T ss_pred CCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCE----ec-----CCcccCC-CC------CccccCCcEecCCCCC
Confidence 4788999999999999999987654334444432211 11 1122110 00 00010111111 3
Q ss_pred CeeEEEEcCCCcEEEEcCCCceEEeeec
Q psy4832 502 SISALSVSPDGVVNVADQGSLHILALQH 529 (770)
Q Consensus 502 ~P~giav~~dG~lyvaD~~~~~I~~i~~ 529 (770)
.|+||++. +|.+|+++..+.+|.++..
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~ 290 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPL 290 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEE
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEe
Confidence 79999998 6899999998888887744
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-09 Score=115.63 Aligned_cols=219 Identities=14% Similarity=0.172 Sum_probs=141.6
Q ss_pred CCCEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcE-EEE
Q psy4832 190 DGSLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINW-EVA 265 (770)
Q Consensus 190 dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~-~~v 265 (770)
.+.+|+++. +.|+.++.+ |+....+.. ....| +++++|.+..||+++...++|++++.. ++.+ ...
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~------~~~~~~~~ 78 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITL---GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQ------LEPPKVVA 78 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEEC---CCCEE-EEEECSSSCEEEEEESTTCEEEEEECS------SSSCEEEE
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEc---cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECC------CCceeEEe
Confidence 566788886 589999864 777665532 34556 999998555699999988899999642 2332 111
Q ss_pred ECCCccccCCCCCCcCCCcccccccccCcce-EEEccCCc-EEEEeCC----CeEEECCC-CcEEEeecCCCCCCCcCCC
Q psy4832 266 VGSGERCIPGDETNCGDNGPALAAKLSHPKG-LAIKADKT-MFIADGT----NIRVVSPE-GIIHTLIGHHKHHNIWSPF 338 (770)
Q Consensus 266 aG~g~~~~p~~~~~~g~~g~~~~a~l~~P~g-Iavd~~G~-lYvaD~~----~Ir~id~~-G~i~t~~g~~~~~~~~~p~ 338 (770)
.. .-..|.. ++++++|. ||++... .|++++.+ +.+...+..+
T Consensus 79 ~~----------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--------- 127 (331)
T 3u4y_A 79 IQ----------------------EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP--------- 127 (331)
T ss_dssp EE----------------------ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC---------
T ss_pred cc----------------------cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC---------
Confidence 11 0124667 99999987 6655544 48888864 4444333211
Q ss_pred ccCCCcccccccccCcceEEEeCCCCe-EEEEe--CCE---EEEEcCCCcEEEEecCCCCCCCCCCCCcccccccccccc
Q psy4832 339 NCHRSFPASTAQLQWPTGLALSPLDDS-LHFID--DRV---IFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKK 412 (770)
Q Consensus 339 ~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D--~~~---I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~ 412 (770)
..|.+++++| +|+ ||+++ .+. ++.++.+|.+........
T Consensus 128 -------------~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~--------------------- 172 (331)
T 3u4y_A 128 -------------YDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI--------------------- 172 (331)
T ss_dssp -------------TTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE---------------------
T ss_pred -------------CCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEeecCCccc---------------------
Confidence 2478999999 775 99997 244 455556665432221000
Q ss_pred ccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcE----EEeecCccCCCCCcCCCCCcccc
Q psy4832 413 STVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRM----FDFAGRWQSDKKNCNTTNCAEFE 486 (770)
Q Consensus 413 ~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i----~~~aG~~~~~~~~~~~~~~~~~~ 486 (770)
..-..|.+++++|+|. ||++...++. |+.++. ++++ ..+..
T Consensus 173 ------------~~~~~~~~~~~spdg~~l~v~~~~~~~---v~v~d~~~~~~~~~~~~~~~------------------ 219 (331)
T 3u4y_A 173 ------------SGGTRPFNITFTPDGNFAFVANLIGNS---IGILETQNPENITLLNAVGT------------------ 219 (331)
T ss_dssp ------------CSSSSEEEEEECTTSSEEEEEETTTTE---EEEEECSSTTSCEEEEEEEC------------------
T ss_pred ------------cCCCCccceEECCCCCEEEEEeCCCCe---EEEEECCCCcccceeeeccC------------------
Confidence 0113489999999998 9999987765 555554 3442 22211
Q ss_pred cCccCcccccceecCCeeEEEEcCCCc-EEEEcCCCceEEeeecC
Q psy4832 487 KNSKETLLTSTARFTSISALSVSPDGV-VNVADQGSLHILALQHY 530 (770)
Q Consensus 487 ~~~~d~~~~~~~~l~~P~giav~~dG~-lyvaD~~~~~I~~i~~~ 530 (770)
-..|.+++++|||. ||++..+.+.|..+...
T Consensus 220 -------------~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~ 251 (331)
T 3u4y_A 220 -------------NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQL 251 (331)
T ss_dssp -------------SSCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred -------------CCCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence 13478899999997 88988877777766543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.33 E-value=7.1e-10 Score=119.64 Aligned_cols=258 Identities=16% Similarity=0.151 Sum_probs=151.6
Q ss_pred cccCceEEEEcCCCC-EEEEeC-----ceE--EEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEE
Q psy4832 178 RLLTPVALTSGPDGS-LYVGDF-----NLV--RRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILR 248 (770)
Q Consensus 178 ~l~~P~~la~~~dG~-lyv~d~-----~~I--~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~ 248 (770)
....|..|+++|||. ||+++. +.| ..++.+ |+...+... ...-..|..+++ .+..||+++...+.|..
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPCYLTT--NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence 456789999999997 888876 355 556665 665544321 223457889998 36789999988888887
Q ss_pred EeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEE--CCCC---
Q psy4832 249 VLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVV--SPEG--- 320 (770)
Q Consensus 249 i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~i--d~~G--- 320 (770)
++.. .++.+..+...- ...|.+..........|++++++++|. ||+++... |+.+ +..+
T Consensus 125 ~~~~-----~~g~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~ 191 (361)
T 3scy_A 125 FPIG-----QDGALLPASDVI--------EFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANAD 191 (361)
T ss_dssp EEBC-----TTSCBCSCSEEE--------ECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTT
T ss_pred EEeC-----CCCcCcccceeE--------EccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcc
Confidence 7542 222211100000 000111111112234678999999997 99998654 5544 5443
Q ss_pred --c-EEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe--CCEEEEEcC-CCcEEEEecCCCCC
Q psy4832 321 --I-IHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID--DRVIFKLTN-DLKVKIVAGIPLHC 393 (770)
Q Consensus 321 --~-i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D--~~~I~~i~~-~G~v~~vaG~~~~~ 393 (770)
+ +........ .....-..|.+++++| +|+ ||+++ ++.|..++. +|.+..+......
T Consensus 192 ~~~~l~~~~~~~~---------------~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~- 254 (361)
T 3scy_A 192 NKEKFLTKGTPEA---------------FKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAAD- 254 (361)
T ss_dssp TCCCCEEEEEEEE---------------EECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESC-
T ss_pred cccceeecccccc---------------eecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecC-
Confidence 2 221100000 0000123588999999 775 89988 577877773 5555433311110
Q ss_pred CCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCC-CCceeeEEEEc-CCCcEEEeecCc
Q psy4832 394 RTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADID-ARKVNALRVID-STGRMFDFAGRW 470 (770)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~-~~ri~~i~~i~-~~G~i~~~aG~~ 470 (770)
...+..|.+|+++|+|+ ||+++.. .++| .+..++ .+|++..+.-..
T Consensus 255 ------------------------------~~~~~~~~~i~~spdg~~l~v~~~~~~~~i-~v~~~~~~~g~~~~~~~~~ 303 (361)
T 3scy_A 255 ------------------------------TVNAQGSGDIHLSPDGKYLYASNRLKADGV-AIFKVDETNGTLTKVGYQL 303 (361)
T ss_dssp ------------------------------SSCCCCEEEEEECTTSSEEEEEECSSSCEE-EEEEECTTTCCEEEEEEEE
T ss_pred ------------------------------CCCCCCcccEEECCCCCEEEEECCCCCCEE-EEEEEcCCCCcEEEeeEec
Confidence 01134589999999998 8899987 6654 344455 356654432111
Q ss_pred cCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCc-EEEEcCCCceEEee
Q psy4832 471 QSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGV-VNVADQGSLHILAL 527 (770)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~-lyvaD~~~~~I~~i 527 (770)
. -..|.+++++|||. ||+++..++.|..+
T Consensus 304 ~----------------------------g~~~~~~~~spdg~~l~~~~~~~~~v~v~ 333 (361)
T 3scy_A 304 T----------------------------GIHPRNFIITPNGKYLLVACRDTNVIQIF 333 (361)
T ss_dssp C----------------------------SSCCCEEEECTTSCEEEEEETTTTEEEEE
T ss_pred C----------------------------CCCCceEEECCCCCEEEEEECCCCCEEEE
Confidence 0 13488999999996 88998777666543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=6e-10 Score=119.07 Aligned_cols=194 Identities=15% Similarity=0.140 Sum_probs=135.3
Q ss_pred cccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCC-cEEEEECCCccccCCCCCCcCCCcccccccccCcceEE
Q psy4832 220 QVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSI-NWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLA 298 (770)
Q Consensus 220 ~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g-~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIa 298 (770)
....+.+++++|.++.||++|...++|++++ +++ ....+.- . ..|.+|+
T Consensus 47 ~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d-------~~~~~~~~~~~-~----------------------~~v~~i~ 96 (326)
T 2ghs_A 47 PMLLGEGPTFDPASGTAWWFNILERELHELH-------LASGRKTVHAL-P----------------------FMGSALA 96 (326)
T ss_dssp CCSBEEEEEEETTTTEEEEEEGGGTEEEEEE-------TTTTEEEEEEC-S----------------------SCEEEEE
T ss_pred CCCCCcCCeEeCCCCEEEEEECCCCEEEEEE-------CCCCcEEEEEC-C----------------------CcceEEE
Confidence 3456789999987799999999989999994 333 3332210 0 1477899
Q ss_pred EccCCcEEEEeCCCeEEECC-CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC------
Q psy4832 299 IKADKTMFIADGTNIRVVSP-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD------ 371 (770)
Q Consensus 299 vd~~G~lYvaD~~~Ir~id~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~------ 371 (770)
++++|++|++....|++++. +|.+..+..... ......|.++++++ +|+|||++.
T Consensus 97 ~~~dg~l~v~~~~gl~~~d~~~g~~~~~~~~~~-----------------~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~ 158 (326)
T 2ghs_A 97 KISDSKQLIASDDGLFLRDTATGVLTLHAELES-----------------DLPGNRSNDGRMHP-SGALWIGTMGRKAET 158 (326)
T ss_dssp EEETTEEEEEETTEEEEEETTTCCEEEEECSST-----------------TCTTEEEEEEEECT-TSCEEEEEEETTCCT
T ss_pred EeCCCeEEEEECCCEEEEECCCCcEEEEeeCCC-----------------CCCCCCCCCEEECC-CCCEEEEeCCCcCCC
Confidence 99999999998555999986 477766543210 01234688999999 999999873
Q ss_pred --CEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCC
Q psy4832 372 --RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDA 448 (770)
Q Consensus 372 --~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~ 448 (770)
..|++++ +|++..+.. .+..|.+++++++|+ ||+++..+
T Consensus 159 ~~~~l~~~~-~g~~~~~~~-------------------------------------~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 159 GAGSIYHVA-KGKVTKLFA-------------------------------------DISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp TCEEEEEEE-TTEEEEEEE-------------------------------------EESSEEEEEECTTSCEEEEEETTT
T ss_pred CceEEEEEe-CCcEEEeeC-------------------------------------CCcccCCeEEcCCCCEEEEEECCC
Confidence 5799998 777655431 123589999999996 99999887
Q ss_pred CceeeEEEEcC---CC-cEE---EeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCC
Q psy4832 449 RKVNALRVIDS---TG-RMF---DFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGS 521 (770)
Q Consensus 449 ~ri~~i~~i~~---~G-~i~---~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~ 521 (770)
++ |..++. +| .+. .+... ......|.+++++++|.|||++.++
T Consensus 201 ~~---I~~~d~~~~~Gl~~~~~~~~~~~---------------------------~~~~~~p~gi~~d~~G~lwva~~~~ 250 (326)
T 2ghs_A 201 NR---LMRVPLDARTGLPTGKAEVFIDS---------------------------TGIKGGMDGSVCDAEGHIWNARWGE 250 (326)
T ss_dssp CE---EEEEEBCTTTCCBSSCCEEEEEC---------------------------TTSSSEEEEEEECTTSCEEEEEETT
T ss_pred CE---EEEEEcccccCCcccCceEEEEC---------------------------CCCCCCCCeeEECCCCCEEEEEeCC
Confidence 65 555553 34 321 11100 0011358999999999999999877
Q ss_pred ceEEeeec
Q psy4832 522 LHILALQH 529 (770)
Q Consensus 522 ~~I~~i~~ 529 (770)
++|.++.+
T Consensus 251 ~~v~~~d~ 258 (326)
T 2ghs_A 251 GAVDRYDT 258 (326)
T ss_dssp TEEEEECT
T ss_pred CEEEEECC
Confidence 78888765
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.4e-10 Score=113.60 Aligned_cols=214 Identities=14% Similarity=0.152 Sum_probs=137.3
Q ss_pred cCceEEEEcCC-CCEEE-EeC-ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCcc
Q psy4832 180 LTPVALTSGPD-GSLYV-GDF-NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVA 256 (770)
Q Consensus 180 ~~P~~la~~~d-G~lyv-~d~-~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~ 256 (770)
..+.+|+++|+ +.||+ .|. ++|.+++++|++...+.. .++..+.||++.+ ++.++|++..+++++.+..
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l--~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v----- 98 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPL--DFVKDLETIEYIG-DNQFVISDERDYAIYVISL----- 98 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEEC--SSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE-----
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEec--CCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc-----
Confidence 46899999995 56887 454 499999999999877643 3457899999995 8889999998999988854
Q ss_pred CCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCC-cEEEEeCCC---eEEEC--CCCcEEEeecCCC
Q psy4832 257 DPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADK-TMFIADGTN---IRVVS--PEGIIHTLIGHHK 330 (770)
Q Consensus 257 ~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G-~lYvaD~~~---Ir~id--~~G~i~t~~g~~~ 330 (770)
+.++.+..+.-... +. +. ...=....|||+|+.+ .||++.... |+.++ ..+.-.++....
T Consensus 99 ~~~~~i~~~~~~~~---~~-----~~-----~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~- 164 (255)
T 3qqz_A 99 TPNSEVKILKKIKI---PL-----QE-----SPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDK- 164 (255)
T ss_dssp CTTCCEEEEEEEEC---CC-----SS-----CCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECH-
T ss_pred CCCCeeeeeeeecc---cc-----cc-----ccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecch-
Confidence 23343222211000 00 00 0001135899999976 699886443 66665 111000111000
Q ss_pred CCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCcccccccc
Q psy4832 331 HHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQS 408 (770)
Q Consensus 331 ~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~ 408 (770)
.......+..+.+|++||..+.|||.. +++|..++.+|++....-....+
T Consensus 165 -------------~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~--------------- 216 (255)
T 3qqz_A 165 -------------ALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGS--------------- 216 (255)
T ss_dssp -------------HHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTG---------------
T ss_pred -------------hhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCcc---------------
Confidence 000012345689999999999999987 68999999999866544221111
Q ss_pred ccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC
Q psy4832 409 KTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS 459 (770)
Q Consensus 409 ~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~ 459 (770)
......+.+|.|||+|++|+|||+...| . +.++.+
T Consensus 217 ------------~~l~~~~~qpEGia~d~~G~lyIvsE~n-~---~y~f~~ 251 (255)
T 3qqz_A 217 ------------RGLSHNIKQAEGVAMDASGNIYIVSEPN-R---FYRFTP 251 (255)
T ss_dssp ------------GGCSSCCCSEEEEEECTTCCEEEEETTT-E---EEEEEC
T ss_pred ------------CCcccccCCCCeeEECCCCCEEEEcCCc-e---EEEEEe
Confidence 0122346789999999999999997765 3 555544
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-06 Score=97.58 Aligned_cols=491 Identities=15% Similarity=0.171 Sum_probs=253.1
Q ss_pred CeEEECCCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCCEEEEeC--ceEEEEcCCCcE
Q psy4832 133 GILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDF--NLVRRLTPEGNV 210 (770)
Q Consensus 133 gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~--~~I~~i~~~G~v 210 (770)
.+.+.+||..+.... ..+.|.+..-+|..... ....-....+|++.|||.+.++-. +.|+.++.+|+.
T Consensus 21 ~~a~spdg~~las~~-~d~~v~iWd~~~~~~~~---------l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~ 90 (577)
T 2ymu_A 21 GVAFSPDGQTIASAS-DDKTVKLWNRNGQLLQT---------LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL 90 (577)
T ss_dssp EEEECTTSSCEEEEE-TTSEEEEECTTSCEEEE---------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE
T ss_pred EEEECCCCCEEEEEe-CCCEEEEEECCCCEEEE---------EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCE
Confidence 455566776555444 55566655533332100 000112346899999999776543 578888888887
Q ss_pred EEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCc----cCCCCcEEEEECC------------CccccC
Q psy4832 211 FTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESV----ADPSINWEVAVGS------------GERCIP 274 (770)
Q Consensus 211 ~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~----~~~~g~~~~vaG~------------g~~~~p 274 (770)
...+. ........++++| ++...++-...+.+...+..... ......+..+.-. +.....
T Consensus 91 ~~~~~---~~~~~v~~~~~s~-d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 166 (577)
T 2ymu_A 91 LQTLT---GHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 166 (577)
T ss_dssp EEEEC---CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred EEEEE---CCCCCEEEEEECC-CCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceecc
Confidence 66553 2233467899998 66665555554555444321100 0001111111000 000000
Q ss_pred CCCCCcCCCcccccccccCcceEEEccCCcEEEE-eCCC-eEEECCCCcEEEeecCCCCCCCcCCCccCCCccccccccc
Q psy4832 275 GDETNCGDNGPALAAKLSHPKGLAIKADKTMFIA-DGTN-IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQ 352 (770)
Q Consensus 275 ~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYva-D~~~-Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~ 352 (770)
...+...............+++.++|.+.++ .... |+..+.++......... -.
T Consensus 167 ---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~---------------------~~ 222 (577)
T 2ymu_A 167 ---NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH---------------------SS 222 (577)
T ss_dssp ---CTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECC---------------------SS
T ss_pred ---ccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecC---------------------CC
Confidence 0000000000111123346777888875444 3333 77778777544332111 11
Q ss_pred CcceEEEeCCCCeE-EEEe-CCEEEEEcCCCcEEE-EecCCCCCCCCCCCCccccccccccccccccCCcccccccccCC
Q psy4832 353 WPTGLALSPLDDSL-HFID-DRVIFKLTNDLKVKI-VAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGS 429 (770)
Q Consensus 353 ~P~gla~d~~~g~l-yv~D-~~~I~~i~~~G~v~~-vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 429 (770)
...+++++| ++.+ ..+. ++.|+..+.+++... +.+. -..
T Consensus 223 ~v~~~~~s~-dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~-------------------------------------~~~ 264 (577)
T 2ymu_A 223 SVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGH-------------------------------------SSS 264 (577)
T ss_dssp CEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECCC-------------------------------------SSC
T ss_pred CEEEEEECC-CCCEEEEEeCCCEEEEEeCCCCEEEEEecC-------------------------------------CCC
Confidence 356899999 7764 4444 567777777765332 2221 123
Q ss_pred eeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEee-cCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEE
Q psy4832 430 LTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFA-GRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSV 508 (770)
Q Consensus 430 P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~a-G~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav 508 (770)
..++++.|+|..+++-...+. |+..+.+++..... |.. ....++++
T Consensus 265 v~~v~~~~d~~~l~~~~~d~~---i~~w~~~~~~~~~~~~h~------------------------------~~v~~~~~ 311 (577)
T 2ymu_A 265 VNGVAFRPDGQTIASASDDKT---VKLWNRNGQLLQTLTGHS------------------------------SSVWGVAF 311 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSC---EEEEETTSCEEEEECCCS------------------------------SCEEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCE---EEEEeCCCcEEEEEecCC------------------------------CCeEEEEE
Confidence 688999999987776655553 56666666643322 111 12456777
Q ss_pred cCCCcEEEEcCCCceEEeeec----------CCc-----ccCCCCcEEEeCCCCCcEEEEecCCceEEEEcCCCCCcEEE
Q psy4832 509 SPDGVVNVADQGSLHILALQH----------YLP-----THDEHGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYS 573 (770)
Q Consensus 509 ~~dG~lyvaD~~~~~I~~i~~----------~~~-----~~~~~g~~~i~~~~~~e~yvfd~~G~~~~t~d~~tg~~~y~ 573 (770)
+|+|..+++-..++.|+.... +.. .....+.+-+.....+.+.+++..++.+.+...... ....
T Consensus 312 ~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~-~v~~ 390 (577)
T 2ymu_A 312 SPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS-SVRG 390 (577)
T ss_dssp CTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSS-CEEE
T ss_pred CCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCC-CeEE
Confidence 777765554333333322211 110 011233333333445667778887777776655443 2344
Q ss_pred EEecCCCCCCceEEEECCCCCEEEEEEcCCCcce-E-----------eccCCccc--cCCCCcceeecceeeeeecCceE
Q psy4832 574 FLYSKNTSFGKLSTITDASGNKINFLRDYSNVAQ-L-----------QWPTGLAL--SPLDDSLHFIDDRVIFKLTNDLK 639 (770)
Q Consensus 574 ~~Yd~~~~~G~L~~vtd~~G~~~~~~~d~~~~~~-~-----------~~p~G~~~--~~~d~~~~~~~~~~~~~~~~g~l 639 (770)
..+..+ |++......+| .+++..-..++.. + ..|++..+ ...|+. ..+-...+++
T Consensus 391 ~~~s~d---g~~l~~~~~d~-~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~-------v~~w~~~~~~ 459 (577)
T 2ymu_A 391 VAFSPD---GQTIASASDDK-TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT-------VKLWNRNGQL 459 (577)
T ss_dssp EEECTT---SSCEEEEETTS-EEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-------EEEEETTSCE
T ss_pred EEECCC---CCEEEEEeCCC-EEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE-------EEEEECCCCE
Confidence 555555 65544443333 2333221112111 1 22333210 111111 1111235555
Q ss_pred EEEEec-CCceEEEEEeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEEEeCCCCeEEEEEEccCCcEeEEEecCcEEEE
Q psy4832 640 IRALKK-GRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLISLVYDERGFLIFAQMFRHKYYI 718 (770)
Q Consensus 640 ~~~~~~-~g~~~~y~YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~~~p~~g~~~~~~yd~~G~l~~~~~~~~~~~~ 718 (770)
++.... .+....-.+.+.|++++.-..+|.+. .|+-... .+..+... .+.+....+.++|++++.-..+... .
T Consensus 460 ~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~--iw~~~~~--~~~~~~~h-~~~v~~l~~s~dg~~l~s~~~dg~v-~ 533 (577)
T 2ymu_A 460 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK--LWNRNGQ--LLQTLTGH-SSSVRGVAFSPDGQTIASASDDKTV-K 533 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEETTSEEE--EEETTSC--EEEEEECC-SSCEEEEEECTTSSCEEEEETTSEE-E
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEE--EEcCCCC--EEEEEeCC-CCCEEEEEEcCCCCEEEEEECcCEE-E
Confidence 555544 33444567788899888777788444 4443322 23333334 6788899999999987766555443 3
Q ss_pred EeCCCCCeEEEEcCCCCEEEEEEeCCCCceEE
Q psy4832 719 ATDQCGTPVMVFNQYGETVREIMRSPYGHIVY 750 (770)
Q Consensus 719 ~~d~~G~~~~~~d~~G~~v~~~~yd~~G~~~~ 750 (770)
+.|..|.++.........|+.+...|.|+.+.
T Consensus 534 lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~ 565 (577)
T 2ymu_A 534 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIA 565 (577)
T ss_dssp EECTTSCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred EEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 45778888887777666788888888888663
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-09 Score=114.91 Aligned_cols=272 Identities=10% Similarity=0.077 Sum_probs=162.2
Q ss_pred ECCCccEEecccCCCeEEEEecc-CccCCccCCCCCcccccccccCceEEEEcCCCC-EEEEeC--ceEEEEcCC-CcE-
Q psy4832 137 KGDGSSLHLKHEFPRTVSVVMGT-GLQRPLVCKDCDGVARDARLLTPVALTSGPDGS-LYVGDF--NLVRRLTPE-GNV- 210 (770)
Q Consensus 137 ~~dG~~~~~~~~~~~~i~~v~g~-G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~-lyv~d~--~~I~~i~~~-G~v- 210 (770)
..++..+|++....+.|.++... |..... .......| +++++|+|. ||+++. +.|++++.+ +++
T Consensus 6 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~---------~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~ 75 (331)
T 3u4y_A 6 QTTSNFGIVVEQHLRRISFFSTDTLEILNQ---------ITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK 75 (331)
T ss_dssp -CCCCEEEEEEGGGTEEEEEETTTCCEEEE---------EECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred cCCCCEEEEEecCCCeEEEEeCcccceeee---------EEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence 34555677776566777777642 222110 01123456 999999997 898887 489999874 554
Q ss_pred EEEeccCcccccceeE-EEEeCCCCcEEEEeCCCc--EEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccc
Q psy4832 211 FTVLQLSATQVSYQYY-LALSPADGHLYISDAEKH--QILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPAL 287 (770)
Q Consensus 211 ~~~~~~~~~~~~~p~~-lav~p~~g~lyvsd~~~~--~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~ 287 (770)
...+. ....|.. ++++|.+..||++....+ .|+.++. .++........
T Consensus 76 ~~~~~----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~------~~~~~~~~~~~------------------- 126 (331)
T 3u4y_A 76 VVAIQ----EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSF------LKNKFISTIPI------------------- 126 (331)
T ss_dssp EEEEE----ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEET------TTTEEEEEEEC-------------------
T ss_pred EEecc----cCCCCccceEECCCCCEEEEecCCCCcccEEEEEC------CCCCeEEEEEC-------------------
Confidence 33332 2245777 999985556774444434 8888853 12333222111
Q ss_pred cccccCcceEEEccCCc-EEEEeCC--C-eE--EECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeC
Q psy4832 288 AAKLSHPKGLAIKADKT-MFIADGT--N-IR--VVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSP 361 (770)
Q Consensus 288 ~a~l~~P~gIavd~~G~-lYvaD~~--~-Ir--~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~ 361 (770)
-..|.+++++++|+ ||+++.. . |+ .++.+|.+........ ..-..|.+++++|
T Consensus 127 ---~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~------------------~~~~~~~~~~~sp 185 (331)
T 3u4y_A 127 ---PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI------------------SGGTRPFNITFTP 185 (331)
T ss_dssp ---CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE------------------CSSSSEEEEEECT
T ss_pred ---CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc------------------cCCCCccceEECC
Confidence 12478999999996 9998753 3 44 4556665533220000 0112488999999
Q ss_pred CCCe-EEEEe--CCEEEEEcCC-CcE----EEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEE
Q psy4832 362 LDDS-LHFID--DRVIFKLTND-LKV----KIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTAL 433 (770)
Q Consensus 362 ~~g~-lyv~D--~~~I~~i~~~-G~v----~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~gi 433 (770)
+|+ ||+++ ++.|..++.. +++ ..+.. -..|.++
T Consensus 186 -dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~--------------------------------------~~~~~~~ 226 (331)
T 3u4y_A 186 -DGNFAFVANLIGNSIGILETQNPENITLLNAVGT--------------------------------------NNLPGTI 226 (331)
T ss_dssp -TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC--------------------------------------SSCCCCE
T ss_pred -CCCEEEEEeCCCCeEEEEECCCCcccceeeeccC--------------------------------------CCCCceE
Confidence 776 99998 5788888843 442 22210 1347899
Q ss_pred EEcCCCC-EEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCC
Q psy4832 434 AFSPTGD-LYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPD 511 (770)
Q Consensus 434 avd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~d 511 (770)
+++|+|. ||++....+. |..++. +|++..+.... ... ...........+++++||
T Consensus 227 ~~spdg~~l~v~~~~~~~---i~~~d~~~~~~~~~~~~~-~~~-------------------~~~~~~~~~~~~~~~spd 283 (331)
T 3u4y_A 227 VVSRDGSTVYVLTESTVD---VFNFNQLSGTLSFVKSFG-HGL-------------------LIDPRPLFGANQMALNKT 283 (331)
T ss_dssp EECTTSSEEEEECSSEEE---EEEEETTTTEEEEEEEEE-CCC-------------------CCCCGGGTTCCCEEECTT
T ss_pred EECCCCCEEEEEEcCCCE---EEEEECCCCceeeecccc-ccc-------------------ccCCCCcccccceEECCC
Confidence 9999998 8898876553 667775 56664432111 000 000011122357999999
Q ss_pred Cc-EEEEcCCCceEEeeecC
Q psy4832 512 GV-VNVADQGSLHILALQHY 530 (770)
Q Consensus 512 G~-lyvaD~~~~~I~~i~~~ 530 (770)
|. ||++...++.|..++..
T Consensus 284 g~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 284 ETKLFISANISRELKVFTIS 303 (331)
T ss_dssp SSEEEEEETTTTEEEEEETT
T ss_pred CCEEEEecCCCCcEEEEEec
Confidence 95 78888877777665543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.5e-10 Score=120.44 Aligned_cols=188 Identities=11% Similarity=0.148 Sum_probs=123.2
Q ss_pred cCceEEEEcCCCCEEEEe--------------CceEEEEcCC---CcEEEEeccC---cccccceeEEEEeCC-CC--cE
Q psy4832 180 LTPVALTSGPDGSLYVGD--------------FNLVRRLTPE---GNVFTVLQLS---ATQVSYQYYLALSPA-DG--HL 236 (770)
Q Consensus 180 ~~P~~la~~~dG~lyv~d--------------~~~I~~i~~~---G~v~~~~~~~---~~~~~~p~~lav~p~-~g--~l 236 (770)
..|.+|+++++|.+|++. .++|.+++++ ++...+.-.+ .....+|.||.+.+. ++ .|
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 468999999999999985 3579999876 4444322111 113358999999652 34 69
Q ss_pred EEEeCC--CcE--EEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC-
Q psy4832 237 YISDAE--KHQ--ILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT- 311 (770)
Q Consensus 237 yvsd~~--~~~--I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~- 311 (770)
||++.. ..+ |+++ ++++...+.+.+-. ...++.|++++++++|.+||++..
T Consensus 130 ~Vvnh~~~~s~ielf~~-------d~~~~~~~~~~~~~-----------------g~~~~~pND~~v~~~G~fyvt~~~~ 185 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKF-------QEEEKSLLHLKTIR-----------------HKLLPSVNDIVAVGPEHFYATNDHY 185 (355)
T ss_dssp EEEECSTTCCEEEEEEE-------ETTTTEEEEEEEEC-----------------CTTCSSEEEEEEEETTEEEEEESCS
T ss_pred EEEECCCCCCeEEEEEE-------ECCCCEEEEEeccc-----------------cCCCCCCceEEEeCCCCEEecCCcE
Confidence 999887 344 4555 45555444443111 124789999999999999988641
Q ss_pred ------------------CeEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEe--
Q psy4832 312 ------------------NIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID-- 370 (770)
Q Consensus 312 ------------------~Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D-- 370 (770)
.|.++++. .++.++ ..+..|+||+++| ++ .|||+|
T Consensus 186 ftd~~~~~~e~~~~~~~g~vyr~d~~-~~~~~~----------------------~~l~~pNGia~sp-Dg~~lYvadt~ 241 (355)
T 3sre_A 186 FIDPYLKSWEMHLGLAWSFVTYYSPN-DVRVVA----------------------EGFDFANGINISP-DGKYVYIAELL 241 (355)
T ss_dssp CSSHHHHHHHHHTTCCCEEEEEECTT-CCEEEE----------------------EEESSEEEEEECT-TSSEEEEEEGG
T ss_pred eCCcccccchhhccCCccEEEEEECC-eEEEee----------------------cCCcccCcceECC-CCCEEEEEeCC
Confidence 15555552 333222 3477899999999 66 799999
Q ss_pred CCEEEEEc--CCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcC-CCCEEEEeC-
Q psy4832 371 DRVIFKLT--NDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSP-TGDLYIADI- 446 (770)
Q Consensus 371 ~~~I~~i~--~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~-~G~lyVaD~- 446 (770)
.++|++++ .+|.+....- . ..-..|.||++|+ +|+||||..
T Consensus 242 ~~~I~~~~~~~~g~l~~~~~--~---------------------------------~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 242 AHKIHVYEKHANWTLTPLRV--L---------------------------------SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp GTEEEEEEECTTSCEEEEEE--E---------------------------------ECSSEEEEEEECTTTCCEEEEEES
T ss_pred CCeEEEEEECCCCcEecCEE--E---------------------------------eCCCCCceEEEeCCCCcEEEEecC
Confidence 48898887 4465432100 0 0013599999999 599999764
Q ss_pred CCCc
Q psy4832 447 DARK 450 (770)
Q Consensus 447 ~~~r 450 (770)
+..+
T Consensus 287 ~g~~ 290 (355)
T 3sre_A 287 NGMR 290 (355)
T ss_dssp CHHH
T ss_pred CceE
Confidence 4444
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-09 Score=109.96 Aligned_cols=213 Identities=12% Similarity=0.176 Sum_probs=134.1
Q ss_pred cceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc
Q psy4832 222 SYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA 301 (770)
Q Consensus 222 ~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~ 301 (770)
..+.||+++|.++.||++.....+|+++ +++|.+....-.+ .+..|.||+++.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~l-------d~~g~v~~~i~l~--------------------g~~D~EGIa~~~ 79 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEM-------TTNGDLIRTIPLD--------------------FVKDLETIEYIG 79 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEE-------ETTCCEEEEEECS--------------------SCSSEEEEEECS
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEE-------eCCCCEEEEEecC--------------------CCCChHHeEEeC
Confidence 4689999999788999866668999999 4556654332110 024689999999
Q ss_pred CCcEEEEeCCC--eE--EECCCCcEEE--eecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--C-C
Q psy4832 302 DKTMFIADGTN--IR--VVSPEGIIHT--LIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--D-R 372 (770)
Q Consensus 302 ~G~lYvaD~~~--Ir--~id~~G~i~t--~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~-~ 372 (770)
+|.+||++-.+ +. .++.++.+.. ........ ...=....|||+||.++.||++. . .
T Consensus 80 ~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~---------------~~~N~g~EGLA~d~~~~~L~va~E~~p~ 144 (255)
T 3qqz_A 80 DNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQE---------------SPTNCGFEGLAYSRQDHTFWFFKEKNPI 144 (255)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSS---------------CCCSSCCEEEEEETTTTEEEEEEESSSE
T ss_pred CCEEEEEECCCCcEEEEEcCCCCeeeeeeeecccccc---------------ccccCCcceEEEeCCCCEEEEEECcCCc
Confidence 99888987554 44 4566675332 22111000 00011258999999666899986 2 3
Q ss_pred EEEEEc--CCC-cEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcC-CCCEEEEeCCC
Q psy4832 373 VIFKLT--NDL-KVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSP-TGDLYIADIDA 448 (770)
Q Consensus 373 ~I~~i~--~~G-~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~-~G~lyVaD~~~ 448 (770)
.|+.++ ..+ .++++. ...+.....+..+.+|++|| .|.|||....+
T Consensus 145 ~i~~~~g~~~~~~l~i~~------------------------------~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s 194 (255)
T 3qqz_A 145 EVYKVNGLLSSNELHISK------------------------------DKALQRQFTLDDVSGAEFNQQKNTLLVLSHES 194 (255)
T ss_dssp EEEEEESTTCSSCCEEEE------------------------------CHHHHHTCCSSCCCEEEEETTTTEEEEEETTT
T ss_pred eEEEEcccccCCceeeec------------------------------chhhccccccCCceeEEEcCCCCeEEEEECCC
Confidence 677775 111 111110 00000111245689999998 68899999888
Q ss_pred CceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeee
Q psy4832 449 RKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQ 528 (770)
Q Consensus 449 ~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~ 528 (770)
++ +-.+|.+|++..+.--. .+ .......+..|.|||+|++|+|||+.-.| .++++.
T Consensus 195 ~~---L~~~d~~g~~~~~~~L~-~g-------------------~~~l~~~~~qpEGia~d~~G~lyIvsE~n-~~y~f~ 250 (255)
T 3qqz_A 195 RA---LQEVTLVGEVIGEMSLT-KG-------------------SRGLSHNIKQAEGVAMDASGNIYIVSEPN-RFYRFT 250 (255)
T ss_dssp TE---EEEECTTCCEEEEEECS-TT-------------------GGGCSSCCCSEEEEEECTTCCEEEEETTT-EEEEEE
T ss_pred Ce---EEEEcCCCCEEEEEEcC-Cc-------------------cCCcccccCCCCeeEECCCCCEEEEcCCc-eEEEEE
Confidence 74 77889999865543211 00 00112346789999999999999996665 888876
Q ss_pred cC
Q psy4832 529 HY 530 (770)
Q Consensus 529 ~~ 530 (770)
+.
T Consensus 251 ~~ 252 (255)
T 3qqz_A 251 PQ 252 (255)
T ss_dssp C-
T ss_pred ec
Confidence 53
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-09 Score=122.10 Aligned_cols=278 Identities=16% Similarity=0.136 Sum_probs=147.4
Q ss_pred ccccCceEEEEcCCCC--EEEEeC-ceEEEEcCCCcEE--EEeccC---c-----ccccceeEEEEeCC---CCcEEEEe
Q psy4832 177 ARLLTPVALTSGPDGS--LYVGDF-NLVRRLTPEGNVF--TVLQLS---A-----TQVSYQYYLALSPA---DGHLYISD 240 (770)
Q Consensus 177 ~~l~~P~~la~~~dG~--lyv~d~-~~I~~i~~~G~v~--~~~~~~---~-----~~~~~p~~lav~p~---~g~lyvsd 240 (770)
..|..|++|++.|||+ |||++. ++|++++++|... .++.+. . .....+.+||++|. ++.|||+-
T Consensus 11 ~gL~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y 90 (463)
T 2wg3_C 11 SGLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY 90 (463)
T ss_dssp EEESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred cCCCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence 4588999999999996 999998 5999998887531 122211 1 11346789999984 58999985
Q ss_pred CCC------------cEEEEEeccCC---ccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcE
Q psy4832 241 AEK------------HQILRVLSLES---VADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTM 305 (770)
Q Consensus 241 ~~~------------~~I~~i~~~~~---~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~l 305 (770)
+.. .+|.|+..... ..++ ...+++..... ...-.+...|++++||.|
T Consensus 91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~-~~~~~i~~~~~-----------------~~~~H~g~~l~fgpDG~L 152 (463)
T 2wg3_C 91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDL-RTARVFLEVAE-----------------LHRKHLGGQLLFGPDGFL 152 (463)
T ss_dssp EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCG-GGCEEEEEEEE-----------------SSSSSCEEEEEECTTSCE
T ss_pred eCCCCCcccCCcccceEEEEEEEcCCCCCccCC-CCceEEEEcCC-----------------CCCcccCCcEeECCCCcE
Confidence 421 47877765321 0111 12223322100 001234568999999999
Q ss_pred EEEeC--CC-----------------eEEECCCCcEEEeecCCCCCCCcC-----CCccCC--CcccccccccCcceEEE
Q psy4832 306 FIADG--TN-----------------IRVVSPEGIIHTLIGHHKHHNIWS-----PFNCHR--SFPASTAQLQWPTGLAL 359 (770)
Q Consensus 306 YvaD~--~~-----------------Ir~id~~G~i~t~~g~~~~~~~~~-----p~~~~~--~~~~~~~~l~~P~gla~ 359 (770)
||+-+ .+ |.+++++|.- ....|+ |+.... ....-...+++|.+|++
T Consensus 153 Yv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~--------~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~ 224 (463)
T 2wg3_C 153 YIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDM--------CNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAV 224 (463)
T ss_dssp EEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCC--------SSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEE
T ss_pred EEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCc--------ccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEE
Confidence 99832 21 5555555420 000011 111110 11234556889999999
Q ss_pred eCCC----C--eEEEEeCCEEEEEcCCCcEEEEe-cCCCCCCCCCCCCccccccccccccccccCCcccccccc-cCCee
Q psy4832 360 SPLD----D--SLHFIDDRVIFKLTNDLKVKIVA-GIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMD-LGSLT 431 (770)
Q Consensus 360 d~~~----g--~lyv~D~~~I~~i~~~G~v~~va-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-l~~P~ 431 (770)
+|.+ | .+|++|..-... ...++..+. |.. ... ..|.. ..... =..|.
T Consensus 225 dp~tg~~~G~l~~~~~D~~G~~~--~~~ei~~i~~G~~--yG~---~~P~~------------------~~~~~~g~Ap~ 279 (463)
T 2wg3_C 225 DRHPTDININLTILCSDSNGKNR--SSARILQIIKGKD--YES---EPSLL------------------EFKPFSNGPLV 279 (463)
T ss_dssp ESSCSSTTCSEEEEEECC--------CEEEEEEC------CCS---CCCCE------------------ECCC----CEE
T ss_pred CCCCCCcccceEEEecccCCCCC--CCCeEeeeccCCC--CCC---CCCeE------------------EeeCCCCcccc
Confidence 9943 4 567788410000 011222221 210 000 00100 00000 03688
Q ss_pred EEEEc-------CCCCEEEEeCCCCceeeEEEEcCCCc---EEEe-ecCccCCCCCcCCCCCcccccCccCcccccceec
Q psy4832 432 ALAFS-------PTGDLYIADIDARKVNALRVIDSTGR---MFDF-AGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARF 500 (770)
Q Consensus 432 giavd-------~~G~lyVaD~~~~ri~~i~~i~~~G~---i~~~-aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l 500 (770)
|++|- -.|.+|++|.. .+|.++. ++.++. ...+ .|.. ........
T Consensus 280 G~~~Y~G~~fP~~~g~~f~~~~~-g~i~~~~-~~~~~~~~~~~~~~~g~~----------------------~~~~~~~~ 335 (463)
T 2wg3_C 280 GGFVYRGCQSERLYGSYVFGDRN-GNFLTLQ-QSPVTKQWQEKPLCLGTS----------------------GSCRGYFS 335 (463)
T ss_dssp EEEECCCSSCTTTTTCEEEEETT-SCEEEEE-C-----CCEEEEECEEET----------------------TSSCSCCC
T ss_pred ceEEEeCCCChhhcceEEEecCC-CcEEEEE-eCCCCceeeEEEeecCCc----------------------cccccccc
Confidence 99883 24679999997 5554442 222221 1111 1211 00001124
Q ss_pred CCeeEEEEcCCCcEEEEcC-------CCceEEeeec
Q psy4832 501 TSISALSVSPDGVVNVADQ-------GSLHILALQH 529 (770)
Q Consensus 501 ~~P~giav~~dG~lyvaD~-------~~~~I~~i~~ 529 (770)
.+|.+|+++|||.|||+|. .+++|+||..
T Consensus 336 ~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~~ 371 (463)
T 2wg3_C 336 GHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVD 371 (463)
T ss_dssp SEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEEC
T ss_pred CcceEEEECCCCCEEEEeccCCcccCCCCcEEEecC
Confidence 5799999999999999986 5789999974
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.7e-09 Score=106.21 Aligned_cols=204 Identities=14% Similarity=0.119 Sum_probs=132.6
Q ss_pred CceEEEEcCCCCEEEEeC----ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCc
Q psy4832 181 TPVALTSGPDGSLYVGDF----NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESV 255 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~----~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~ 255 (770)
.|.+|+++++|.||++.. +.|+++|+ .|++...+..+ .-..+.+++++ ++.||+++..+++|.+++.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~--~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~---- 93 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD--DSYFGEGLTLL--NEKLYQVVWLKNIGFIYDR---- 93 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC--TTCCEEEEEEE--TTEEEEEETTCSEEEEEET----
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC--CCcceEEEEEe--CCEEEEEEecCCEEEEEEC----
Confidence 589999999999999964 59999996 48888765432 23455688887 6799999999999999953
Q ss_pred cCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECCCC-cEEEeecCCCCCC
Q psy4832 256 ADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSPEG-IIHTLIGHHKHHN 333 (770)
Q Consensus 256 ~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~~G-~i~t~~g~~~~~~ 333 (770)
.+..+..-+..+. ..+.+|+.| .+.||+++..+ |.++|+.. ++..-+..+..
T Consensus 94 --~t~~v~~~i~~g~---------------------~~g~glt~D-g~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-- 147 (266)
T 2iwa_A 94 --RTLSNIKNFTHQM---------------------KDGWGLATD-GKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-- 147 (266)
T ss_dssp --TTTEEEEEEECCS---------------------SSCCEEEEC-SSSEEEECSSSEEEEECTTTCCEEEEEECEET--
T ss_pred --CCCcEEEEEECCC---------------------CCeEEEEEC-CCEEEEECCCCeEEEEECCCCcEEEEEEECCC--
Confidence 1232221111100 023345543 34699999766 99999764 44433322211
Q ss_pred CcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcC-CCcEEEEecCC-CCCCCCCCCCccccccccc
Q psy4832 334 IWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTN-DLKVKIVAGIP-LHCRTGDKDKRDFKDKQSK 409 (770)
Q Consensus 334 ~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~-~G~v~~vaG~~-~~~~~~~~~~~~~~~~~~~ 409 (770)
...+..|++|.+. +|.||+.. .+.|.+||+ +|++....-.+ ....
T Consensus 148 --------------~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~--------------- 196 (266)
T 2iwa_A 148 --------------GHRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKK--------------- 196 (266)
T ss_dssp --------------TEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHH---------------
T ss_pred --------------CcccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccc---------------
Confidence 0124568899988 78999988 689999996 57765333111 0000
Q ss_pred cccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEc
Q psy4832 410 TKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVID 458 (770)
Q Consensus 410 ~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~ 458 (770)
...........|+|||++++|+ |||+.....++..|+...
T Consensus 197 ---------~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 197 ---------LIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp ---------HHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred ---------cccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 0000011235699999999875 999999888776665544
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.18 E-value=8.4e-10 Score=115.65 Aligned_cols=222 Identities=13% Similarity=0.048 Sum_probs=133.6
Q ss_pred cccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCC-CcEEEEECCCccccCCCCCCcCCCcccccccccCcceEE
Q psy4832 220 QVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPS-INWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLA 298 (770)
Q Consensus 220 ~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~-g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIa 298 (770)
.-.+|.++++++.++.+|+++..+++|.++ +++ +..+.+. .... .+.|++ ...|.||.
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~-------~~~~~~~~~~~-~~~~------s~~g~~-------~~~~sGl~ 69 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVY-------NPKTQSHFNVV-IDGA------SSNGDG-------EQQMSGLS 69 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEE-------CTTTCCEEEEC-CTTT------CCSSCC-------SEEEEEEE
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEE-------cCCCCeEEEEe-cCCc------cccCCC-------cceeeEEE
Confidence 346899999998899999999999999999 565 3333331 1000 000111 23568999
Q ss_pred E---ccCCcEEE-EeC-------------CC-eEEECCC----CcEEEeecCCCCCCCcCCCccCCCcccccccccCcce
Q psy4832 299 I---KADKTMFI-ADG-------------TN-IRVVSPE----GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTG 356 (770)
Q Consensus 299 v---d~~G~lYv-aD~-------------~~-Ir~id~~----G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~g 356 (770)
+ |++|.|+| ++. .+ +.++|.+ |+....+.-.... ..........+..|.+
T Consensus 70 ~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~--------~~~~~~~g~~~~~~nD 141 (334)
T 2p9w_A 70 LLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQ--------DEFEKKAGKRPFGVVQ 141 (334)
T ss_dssp ESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHH--------HHHHHHHSSCCEEEEE
T ss_pred EeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccc--------ccccccccccccCCce
Confidence 9 78999998 552 23 7788866 5544433211000 0000000012345889
Q ss_pred EEEeCCCCeEEEEe--C-CEEEEEcCCCc-EEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeE
Q psy4832 357 LALSPLDDSLHFID--D-RVIFKLTNDLK-VKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTA 432 (770)
Q Consensus 357 la~d~~~g~lyv~D--~-~~I~~i~~~G~-v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~g 432 (770)
|++|+ +|++||+| . +.|+|++++|+ +..+.-... .......++|
T Consensus 142 vavD~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~-------------------------------~~~~~~G~nG 189 (334)
T 2p9w_A 142 SAQDR-DGNSYVAFALGMPAIARVSADGKTVSTFAWESG-------------------------------NGGQRPGYSG 189 (334)
T ss_dssp EEECT-TSCEEEEEEESSCEEEEECTTSCCEEEEEECCC-------------------------------CSSSCCSCSE
T ss_pred eEECC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCC-------------------------------CcccccCcce
Confidence 99999 99999999 6 88999999997 333321110 0011345899
Q ss_pred EEEcCCCC-EEEEeCCCCceeeEEEEcCCCcEE-EeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEE-EEc
Q psy4832 433 LAFSPTGD-LYIADIDARKVNALRVIDSTGRMF-DFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISAL-SVS 509 (770)
Q Consensus 433 iavd~~G~-lyVaD~~~~ri~~i~~i~~~G~i~-~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~gi-av~ 509 (770)
|++.|+|+ |++++. .++ +.++|..-.+. .+.-. .. .....|..|.+| ++.
T Consensus 190 Iv~~pdg~~Liv~~~-~g~---L~~fD~~~pv~~~v~~~--------------------~~---G~~~~~~~~dgilp~~ 242 (334)
T 2p9w_A 190 ITFDPHSNKLIAFGG-PRA---LTAFDVSKPYAWPEPVK--------------------IN---GDFGTLSGTEKIVTVP 242 (334)
T ss_dssp EEEETTTTEEEEESS-SSS---EEEEECSSSSCCCEECE--------------------ES---SCCCCCTTEEEEEEEE
T ss_pred EEEeCCCCEEEEEcC-CCe---EEEEcCCCCcceeeccc--------------------cc---CCcccccCcccccccc
Confidence 99999997 777777 765 55666441110 01000 00 011346789995 666
Q ss_pred CCCcE-EEEcCCCceEEeeec
Q psy4832 510 PDGVV-NVADQGSLHILALQH 529 (770)
Q Consensus 510 ~dG~l-yvaD~~~~~I~~i~~ 529 (770)
.+|++ +|++..++++...+.
T Consensus 243 ~~G~vllV~~~~~~~~~l~S~ 263 (334)
T 2p9w_A 243 VGNESVLVGARAPYAISFRSW 263 (334)
T ss_dssp ETTEEEEEEEETTEEEEEECS
T ss_pred cCCEEEEEEcCCCCEEEEECC
Confidence 68877 899887766544433
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.6e-08 Score=104.38 Aligned_cols=240 Identities=14% Similarity=0.117 Sum_probs=142.6
Q ss_pred cCceEEEEcCCCC-EEEEeC--ceEEEEcC---CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccC
Q psy4832 180 LTPVALTSGPDGS-LYVGDF--NLVRRLTP---EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLE 253 (770)
Q Consensus 180 ~~P~~la~~~dG~-lyv~d~--~~I~~i~~---~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~ 253 (770)
..|.+++++|+|. ||++.. +.|+.++. +|+...+...... ..|..++++|.+..||++....+.|..++.
T Consensus 38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~-- 113 (343)
T 1ri6_A 38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP--GSLTHISTDHQGQFVFVGSYNAGNVSVTRL-- 113 (343)
T ss_dssp SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS--SCCSEEEECTTSSEEEEEETTTTEEEEEEE--
T ss_pred CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC--CCCcEEEEcCCCCEEEEEecCCCeEEEEEC--
Confidence 3688999999998 888887 56766543 3555433222121 278999999855569999988888887743
Q ss_pred CccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEe-CCC-eEEEC--CCCcEEEee--
Q psy4832 254 SVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIAD-GTN-IRVVS--PEGIIHTLI-- 326 (770)
Q Consensus 254 ~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD-~~~-Ir~id--~~G~i~t~~-- 326 (770)
+ ++........ ......|.+++++++|. ||+++ ... |+.++ .+|.+..+.
T Consensus 114 ---~-~~~~~~~~~~-------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 170 (343)
T 1ri6_A 114 ---E-DGLPVGVVDV-------------------VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA 170 (343)
T ss_dssp ---E-TTEEEEEEEE-------------------ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred ---C-CCcccccccc-------------------ccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc
Confidence 1 2221111100 00112488999999986 88887 333 66655 446654322
Q ss_pred cCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe--CCEEEEEcCC---CcEEE---EecCCCCCCCCC
Q psy4832 327 GHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID--DRVIFKLTND---LKVKI---VAGIPLHCRTGD 397 (770)
Q Consensus 327 g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D--~~~I~~i~~~---G~v~~---vaG~~~~~~~~~ 397 (770)
.... ..-..|.+++++| ++. ||+++ ++.|..++.+ |++.. +...+..
T Consensus 171 ~~~~------------------~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~----- 226 (343)
T 1ri6_A 171 EVTT------------------VEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN----- 226 (343)
T ss_dssp EEEC------------------STTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT-----
T ss_pred cccc------------------CCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc-----
Confidence 0000 0012578999999 775 88887 4677777743 43321 1111100
Q ss_pred CCCccccccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC---CCcEEEeecCccCC
Q psy4832 398 KDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS---TGRMFDFAGRWQSD 473 (770)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~---~G~i~~~aG~~~~~ 473 (770)
......|.+|+++|+|. ||++....+.| ..++. .+....+.-..
T Consensus 227 --------------------------~~~~~~~~~i~~s~dg~~l~v~~~~~~~i---~v~d~~~~~~~~~~~~~~~--- 274 (343)
T 1ri6_A 227 --------------------------FSDTRWAADIHITPDGRHLYACDRTASLI---TVFSVSEDGSVLSKEGFQP--- 274 (343)
T ss_dssp --------------------------CCSCCCEEEEEECTTSSEEEEEETTTTEE---EEEEECTTSCCEEEEEEEE---
T ss_pred --------------------------ccccCCccceEECCCCCEEEEEecCCCEE---EEEEEcCCCCceEEeeeec---
Confidence 01124588999999986 88888776654 44332 23333332100
Q ss_pred CCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCc-EEEEcCCCceEEee
Q psy4832 474 KKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGV-VNVADQGSLHILAL 527 (770)
Q Consensus 474 ~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~-lyvaD~~~~~I~~i 527 (770)
.-..|.+++++|+|. ||++...++.|..+
T Consensus 275 -------------------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~ 304 (343)
T 1ri6_A 275 -------------------------TETQPRGFNVDHSGKYLIAAGQKSHHISVY 304 (343)
T ss_dssp -------------------------CSSSCCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred -------------------------CCCccceEEECCCCCEEEEecCCCCeEEEE
Confidence 011378899999996 78888666665443
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-09 Score=120.21 Aligned_cols=174 Identities=16% Similarity=0.221 Sum_probs=102.5
Q ss_pred CCCcccee-eeeecCCCeEEECCCccEEecccCCCeEEEEec-cCccCCccCCCCCcccccccccCceEEEEcC----CC
Q psy4832 118 GGWSLDVH-HHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMG-TGLQRPLVCKDCDGVARDARLLTPVALTSGP----DG 191 (770)
Q Consensus 118 ggw~l~~~-~~~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g-~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~----dG 191 (770)
.+|.+..- .-|+.|.++....|| .+|+++.....|..+.. +|....+.. .............+.+|+++| +|
T Consensus 15 ~gf~~~~~a~~l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~~~~-~~~~~~~~~g~~Gllgia~~Pdf~~~g 92 (454)
T 1cru_A 15 ENFDKKVILSNLNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQ-VPEIVNDADGQNGLLGFAFHPDFKNNP 92 (454)
T ss_dssp TTSCEEEEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEE-CTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred CCeEEEEEECCCCCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeEEec-CCccccccCCCCceeEEEECCCcCcCC
Confidence 34544322 237788899999999 48888833346877754 344322110 000000011234577999999 78
Q ss_pred CEEEEeC--------------ceEEEEcCC---CcE---EEEec-cCcccccceeEEEEeCCCCcEEEEeCC--------
Q psy4832 192 SLYVGDF--------------NLVRRLTPE---GNV---FTVLQ-LSATQVSYQYYLALSPADGHLYISDAE-------- 242 (770)
Q Consensus 192 ~lyv~d~--------------~~I~~i~~~---G~v---~~~~~-~~~~~~~~p~~lav~p~~g~lyvsd~~-------- 242 (770)
.|||++. ++|.|++.+ +++ ..++. .+......+.+|+++| +|.|||+...
T Consensus 93 ~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~ 171 (454)
T 1cru_A 93 YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAY 171 (454)
T ss_dssp EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGG
T ss_pred EEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCccc
Confidence 9999974 478888643 222 23332 3333456789999997 8999998432
Q ss_pred ------------------------CcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCC-CcccccccccCcceE
Q psy4832 243 ------------------------KHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGD-NGPALAAKLSHPKGL 297 (770)
Q Consensus 243 ------------------------~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~-~g~~~~a~l~~P~gI 297 (770)
.++|+||+ ++|.+ |.++.+.+. .......-+.+|.||
T Consensus 172 ~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~-------~dG~i-----------p~~Npf~~~~~~ei~a~G~RNp~gl 233 (454)
T 1cru_A 172 LFLPNQAQHTPTQQELNGKDYHTYMGKVLRLN-------LDGSI-----------PKDNPSFNGVVSHIYTLGHRNPQGL 233 (454)
T ss_dssp TTSCCCTTCCCCHHHHHTTCCTTCSSEEEEEC-------TTSCC-----------CTTCCEETTEECSEEEBCCSEEEEE
T ss_pred cccccccccccccccccccCCCCCCeeEEEEe-------CCCCC-----------CCCCCCCCCCcceEEEECCCCcceE
Confidence 35788884 44421 000000000 001122336689999
Q ss_pred EEccCCcEEEEeCCC
Q psy4832 298 AIKADKTMFIADGTN 312 (770)
Q Consensus 298 avd~~G~lYvaD~~~ 312 (770)
++|++|.||++|.+.
T Consensus 234 a~dp~G~L~~~d~g~ 248 (454)
T 1cru_A 234 AFTPNGKLLQSEQGP 248 (454)
T ss_dssp EECTTSCEEEEEECS
T ss_pred EECCCCCEEEEecCC
Confidence 999999999999653
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.16 E-value=3e-05 Score=88.59 Aligned_cols=446 Identities=16% Similarity=0.227 Sum_probs=220.0
Q ss_pred ceEEEEcCCCCEEEE-eC-ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCC
Q psy4832 182 PVALTSGPDGSLYVG-DF-NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPS 259 (770)
Q Consensus 182 P~~la~~~dG~lyv~-d~-~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~ 259 (770)
-.+|++.|||.++++ .. +.|+.++.+|+....+.. .-.....|+++| ++.+.++-..++.|+.++ .+
T Consensus 19 V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~g---h~~~V~~l~fsp-dg~~las~~~d~~i~vWd-------~~ 87 (577)
T 2ymu_A 19 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG---HSSSVWGVAFSP-DGQTIASASDDKTVKLWN-------RN 87 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEEC---CSSCEEEEEECT-TSSEEEEEETTSCEEEEE-------TT
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeC---CCCCEEEEEECC-CCCEEEEEeCCCEEEEEE-------CC
Confidence 468999999986654 33 478888999987766532 223457899998 777777666667777773 34
Q ss_pred CcEEE-EECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeC-CC-eEEECCCCcEE-EeecCCCCC--C
Q psy4832 260 INWEV-AVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADG-TN-IRVVSPEGIIH-TLIGHHKHH--N 333 (770)
Q Consensus 260 g~~~~-vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~-~~-Ir~id~~G~i~-t~~g~~~~~--~ 333 (770)
+.... +.+. -.....|++.++|...++-. .. ++..+..+... ...+..... .
T Consensus 88 ~~~~~~~~~~----------------------~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (577)
T 2ymu_A 88 GQLLQTLTGH----------------------SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 145 (577)
T ss_dssp SCEEEEECCC----------------------SSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEE
T ss_pred CCEEEEEECC----------------------CCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeee
Confidence 43322 2110 11345788888877554432 22 55444333221 111111000 0
Q ss_pred CcCCC------ccCCC-----------cccccccccCcceEEEeCCCCeEEEE-e-CCEEEEEcCCCcEE-EEecCCCCC
Q psy4832 334 IWSPF------NCHRS-----------FPASTAQLQWPTGLALSPLDDSLHFI-D-DRVIFKLTNDLKVK-IVAGIPLHC 393 (770)
Q Consensus 334 ~~~p~------~~~~~-----------~~~~~~~l~~P~gla~d~~~g~lyv~-D-~~~I~~i~~~G~v~-~vaG~~~~~ 393 (770)
.+.|. .+... .............+++.| ++.+.++ . ++.|+..+.+++.. .+.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~---- 220 (577)
T 2ymu_A 146 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGH---- 220 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTTSCEEEEEECC----
T ss_pred eeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecC-CCCEEEEEcCCCEEEEEeCCCcEEEEEecC----
Confidence 00000 00000 000001112234566666 5553333 2 45566555555432 22210
Q ss_pred CCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEe-ecCccC
Q psy4832 394 RTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDF-AGRWQS 472 (770)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~-aG~~~~ 472 (770)
-....+++++|+|.++++-...+. |+..+.+++.... .+.
T Consensus 221 ---------------------------------~~~v~~~~~s~dg~~l~~~~~d~~---i~~w~~~~~~~~~~~~~--- 261 (577)
T 2ymu_A 221 ---------------------------------SSSVRGVAFSPDGQTIASASDDKT---VKLWNRNGQLLQTLTGH--- 261 (577)
T ss_dssp ---------------------------------SSCEEEEEECTTSSCEEEEETTSC---EEEECTTSCEEEEECCC---
T ss_pred ---------------------------------CCCEEEEEECCCCCEEEEEeCCCE---EEEEeCCCCEEEEEecC---
Confidence 123688999999885555444443 6666766664332 211
Q ss_pred CCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeecCCc-----------c----cCCC
Q psy4832 473 DKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYLP-----------T----HDEH 537 (770)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~~~-----------~----~~~~ 537 (770)
-..+.++++.|+|..+++-..++.|+....... . ....
T Consensus 262 ---------------------------~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (577)
T 2ymu_A 262 ---------------------------SSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 314 (577)
T ss_dssp ---------------------------SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTT
T ss_pred ---------------------------CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCC
Confidence 123556777777766554333333333222110 0 1112
Q ss_pred CcEEEeCCCCCcEEEEecCCceEEEEcCCCCCcEEEEEecCCCCCCceEEEECCCCCEEEEEEcCCCcce-E--------
Q psy4832 538 GEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTITDASGNKINFLRDYSNVAQ-L-------- 608 (770)
Q Consensus 538 g~~~i~~~~~~e~yvfd~~G~~~~t~d~~tg~~~y~~~Yd~~~~~G~L~~vtd~~G~~~~~~~d~~~~~~-~-------- 608 (770)
+.+-+.....+.+.++|..++.+.+..... .......+..+ |++......+|.. ++..-..++.. +
T Consensus 315 ~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~-~~v~~~~~s~~---g~~l~~~~~dg~v-~~~~~~~~~~~~~~~~~~~v~ 389 (577)
T 2ymu_A 315 GQTIASASDDKTVKLWNRNGQHLQTLTGHS-SSVWGVAFSPD---GQTIASASDDKTV-KLWNRNGQLLQTLTGHSSSVR 389 (577)
T ss_dssp SSEEEEEETTSCEEEEETTSCEEEEECCCS-SCEEEEEECTT---SSEEEEEETTSEE-EEEETTCCEEEEEECCSSCEE
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEeCCC-CCEEEEEECCC---CCEEEEEeCCCEE-EEEcCCCCEEEEecCCCCCeE
Confidence 233333334556777888777776665443 33455566665 6665555455543 33222222211 1
Q ss_pred ---eccCCcc--ccCCCCcceeecceeeeeecCceEEEEEec-CCceEEEEEeCCCCEEEEEcCCCCEEEEEecCCCCCe
Q psy4832 609 ---QWPTGLA--LSPLDDSLHFIDDRVIFKLTNDLKIRALKK-GRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPT 682 (770)
Q Consensus 609 ---~~p~G~~--~~~~d~~~~~~~~~~~~~~~~g~l~~~~~~-~g~~~~y~YD~~grlv~~~d~~G~~~~~~y~~~~~~~ 682 (770)
..|+|.. ....|+... +-...+++++.... .+....-.+.+.+++++.-..+|.+ ..|+-.. .
T Consensus 390 ~~~~s~dg~~l~~~~~d~~v~-------~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v--~~w~~~~--~ 458 (577)
T 2ymu_A 390 GVAFSPDGQTIASASDDKTVK-------LWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV--KLWNRNG--Q 458 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEE-------EECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE--EEEETTS--C
T ss_pred EEEECCCCCEEEEEeCCCEEE-------EEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEE--EEEECCC--C
Confidence 2233321 111111111 11235555554443 3444456677777777766667743 3343222 1
Q ss_pred eEEEEEeCCCCeEEEEEEccCCcEeEEEecCcEEEEEeCCCCCeEEEEcCCCCEEEEEEeCCCCceE
Q psy4832 683 QVTHIYSPRYGKLISLVYDERGFLIFAQMFRHKYYIATDQCGTPVMVFNQYGETVREIMRSPYGHIV 749 (770)
Q Consensus 683 ~~~~~~~p~~g~~~~~~yd~~G~l~~~~~~~~~~~~~~d~~G~~~~~~d~~G~~v~~~~yd~~G~~~ 749 (770)
.+..+... .+....+.+.+.|++++....+.+.+ ..|..|.++.........|..+...|.|+.+
T Consensus 459 ~~~~~~~~-~~~v~~~~~spd~~~las~~~d~~i~-iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 523 (577)
T 2ymu_A 459 LLQTLTGH-SSSVRGVAFSPDGQTIASASDDKTVK-LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI 523 (577)
T ss_dssp EEEEEECC-SSCEEEEEECTTSCEEEEEETTSEEE-EEETTSCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred EEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCCEEE-EEcCCCCEEEEEeCCCCCEEEEEEcCCCCEE
Confidence 23333333 56677777777777776654443332 2345666666555544445566666666644
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-09 Score=112.91 Aligned_cols=210 Identities=10% Similarity=-0.009 Sum_probs=137.0
Q ss_pred cCCCeEEECCCccEEecccCCCeEEEEeccCc-cCCccCCCCCccc-ccccccCceEEEE---cCCCCEEE-Ee------
Q psy4832 130 FHEGILQKGDGSSLHLKHEFPRTVSVVMGTGL-QRPLVCKDCDGVA-RDARLLTPVALTS---GPDGSLYV-GD------ 197 (770)
Q Consensus 130 ~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~-~~~~~~~~~~g~~-~~~~l~~P~~la~---~~dG~lyv-~d------ 197 (770)
.|+|+.++.....+|+++...+.|.++...+. ...+. ..+.. .......|.+|.+ |++|.||| ++
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~---~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVV---IDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEEC---CTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEe---cCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 69999998877789999988899999977633 21110 11110 0223456799999 79999998 56
Q ss_pred --------CceEEEEcCC----CcEEEEeccCc---c-------cccceeEEEEeCCCCcEEEEeCCC-cEEEEEeccCC
Q psy4832 198 --------FNLVRRLTPE----GNVFTVLQLSA---T-------QVSYQYYLALSPADGHLYISDAEK-HQILRVLSLES 254 (770)
Q Consensus 198 --------~~~I~~i~~~----G~v~~~~~~~~---~-------~~~~p~~lav~p~~g~lyvsd~~~-~~I~~i~~~~~ 254 (770)
.+.|.+++.+ |+....+.+.. . ....+++|++|+ +|++||+++.. ..|+|+
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV----- 164 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARV----- 164 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEE-----
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEE-----
Confidence 2579999977 87776665421 1 345689999996 99999999998 999999
Q ss_pred ccCCCCc-EEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC-eEEECCCCcEEEeecCCCC
Q psy4832 255 VADPSIN-WEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN-IRVVSPEGIIHTLIGHHKH 331 (770)
Q Consensus 255 ~~~~~g~-~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~-Ir~id~~G~i~t~~g~~~~ 331 (770)
+++|. +..+.-. . | .......|.||+++++|+ |+++++.. |.++|..-.+...++...
T Consensus 165 --~pdG~~~~~~~~~-~---~------------~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~- 225 (334)
T 2p9w_A 165 --SADGKTVSTFAWE-S---G------------NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKI- 225 (334)
T ss_dssp --CTTSCCEEEEEEC-C---C------------CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEE-
T ss_pred --eCCCCEEeeeeec-C---C------------CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccc-
Confidence 67876 3322211 0 0 011234688999999996 77777744 999986621110010000
Q ss_pred CCCcCCCccCCCcccccccccCcceE-EEeCCCCeE-EEEe--CCEEEEEcCCC
Q psy4832 332 HNIWSPFNCHRSFPASTAQLQWPTGL-ALSPLDDSL-HFID--DRVIFKLTNDL 381 (770)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~l~~P~gl-a~d~~~g~l-yv~D--~~~I~~i~~~G 381 (770)
......|..|.+| ++.. +|++ +|++ ++.+...+.||
T Consensus 226 -------------~G~~~~~~~~dgilp~~~-~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 226 -------------NGDFGTLSGTEKIVTVPV-GNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp -------------SSCCCCCTTEEEEEEEEE-TTEEEEEEEETTEEEEEECSST
T ss_pred -------------cCCcccccCccccccccc-CCEEEEEEcCCCCEEEEECCCC
Confidence 0001246778895 6655 7775 8888 45666666665
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-07 Score=101.96 Aligned_cols=234 Identities=14% Similarity=0.127 Sum_probs=126.7
Q ss_pred eEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCC---CcEEEEEeccCCccCCC-CcEEEEECCCccccC
Q psy4832 200 LVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAE---KHQILRVLSLESVADPS-INWEVAVGSGERCIP 274 (770)
Q Consensus 200 ~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~---~~~I~~i~~~~~~~~~~-g~~~~vaG~g~~~~p 274 (770)
.+.++++ +|+...+... ....|.+|+++|.+..||+++.. ++.|..+.. +.+ |.+..+.....
T Consensus 30 ~~~~~d~~~g~~~~~~~~---~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~-----~~~~g~~~~~~~~~~---- 97 (361)
T 3scy_A 30 YTFRFNEETGESLPLSDA---EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAF-----DKEKGTLHLLNTQKT---- 97 (361)
T ss_dssp EEEEEETTTCCEEEEEEE---ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEE-----ETTTTEEEEEEEEEC----
T ss_pred EEEEEeCCCCCEEEeecc---cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEE-----eCCCCcEEEeeEecc----
Confidence 3556664 4666544321 45679999999855569999873 456644322 333 55544331100
Q ss_pred CCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEEC--CCCcEEEeecCCCCCCCcCCCccCCCccccccc
Q psy4832 275 GDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVS--PEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQ 350 (770)
Q Consensus 275 ~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id--~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~ 350 (770)
.-..|..+++ ....||+++... |..++ .+|.+..+...-... +.+.......
T Consensus 98 ---------------~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~--------g~~~~~~~~~ 153 (361)
T 3scy_A 98 ---------------MGADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFK--------GSGPDKERQT 153 (361)
T ss_dssp ---------------SSSCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECC--------CCCSCTTTCS
T ss_pred ---------------CCCCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEcc--------CCCCCccccC
Confidence 0125888998 344599987543 55544 455433221100000 0000001112
Q ss_pred ccCcceEEEeCCCCe-EEEEe--CCEEEEE--cCCC-----c-EEEEecCCCCCCCCCCCCccccccccccccccccCCc
Q psy4832 351 LQWPTGLALSPLDDS-LHFID--DRVIFKL--TNDL-----K-VKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDS 419 (770)
Q Consensus 351 l~~P~gla~d~~~g~-lyv~D--~~~I~~i--~~~G-----~-v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (770)
...|.+++++| +|+ ||+++ .+.|..+ +.++ + +.........
T Consensus 154 ~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~--------------------------- 205 (361)
T 3scy_A 154 MPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF--------------------------- 205 (361)
T ss_dssp SCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE---------------------------
T ss_pred CCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce---------------------------
Confidence 34578999999 776 99998 4566555 4333 1 2211000000
Q ss_pred ccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCcccccCccCcccccc
Q psy4832 420 VRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTST 497 (770)
Q Consensus 420 ~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 497 (770)
....-..|.+++++|+|. ||+++..+++| +.++. +|.+..+.... ...
T Consensus 206 ---~~~~~~~~~~~~~spdg~~l~v~~~~~~~v---~v~~~~~g~~~~~~~~~------------------------~~~ 255 (361)
T 3scy_A 206 ---KVAPGSGPRHLIFNSDGKFAYLINEIGGTV---IAFRYADGMLDEIQTVA------------------------ADT 255 (361)
T ss_dssp ---ECCTTCCEEEEEECTTSSEEEEEETTTCEE---EEEEEETTEEEEEEEEE------------------------SCS
T ss_pred ---ecCCCCCCeEEEEcCCCCEEEEEcCCCCeE---EEEEecCCceEEeEEEe------------------------cCC
Confidence 000123589999999997 99999776654 44442 56554332111 001
Q ss_pred eecCCeeEEEEcCCCc-EEEEcCC-CceEEee
Q psy4832 498 ARFTSISALSVSPDGV-VNVADQG-SLHILAL 527 (770)
Q Consensus 498 ~~l~~P~giav~~dG~-lyvaD~~-~~~I~~i 527 (770)
..+..|.+|+++|||. ||+++.. .+.|..+
T Consensus 256 ~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~ 287 (361)
T 3scy_A 256 VNAQGSGDIHLSPDGKYLYASNRLKADGVAIF 287 (361)
T ss_dssp SCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence 1235688999999996 7888877 6665543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=9.5e-09 Score=111.32 Aligned_cols=255 Identities=11% Similarity=0.004 Sum_probs=141.5
Q ss_pred ccCceEEEEcCCCC-EEEEeCceEEEEcC--CCcEEEEeccCcccccceeEEEEeCCCCc---EEEEe------C-----
Q psy4832 179 LLTPVALTSGPDGS-LYVGDFNLVRRLTP--EGNVFTVLQLSATQVSYQYYLALSPADGH---LYISD------A----- 241 (770)
Q Consensus 179 l~~P~~la~~~dG~-lyv~d~~~I~~i~~--~G~v~~~~~~~~~~~~~p~~lav~p~~g~---lyvsd------~----- 241 (770)
...|..++++|+|. ||+++...|..++. +|+...+...... ..|.+++++| +|. +|+++ .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~--g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIG--GHPRANDADT-NTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECC--SSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecC--CCCccEEECC-CCCEEEEEEecCCcceeccceee
Confidence 34689999999998 88887766666653 6776544322111 1377899998 665 33443 1
Q ss_pred -CCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEEC
Q psy4832 242 -EKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVS 317 (770)
Q Consensus 242 -~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id 317 (770)
..+.+..++. +.+|.+......-. ......|.+++++++|. ||++|... |+.++
T Consensus 116 ~~~g~v~v~~~-----~~~g~~~~~~~~~~-----------------~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~ 173 (365)
T 1jof_A 116 KFAGYGNVFSV-----SETGKLEKNVQNYE-----------------YQENTGIHGMVFDPTETYLYSADLTANKLWTHR 173 (365)
T ss_dssp SSCCEEEEEEE-----CTTCCEEEEEEEEE-----------------CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cCCceEEEEcc-----CCCCcCcceEeeEE-----------------eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEE
Confidence 2344444422 23444322111000 00123689999999997 88888643 77766
Q ss_pred C--CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEe--CCEEEEE--cC-CCcEEE----
Q psy4832 318 P--EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID--DRVIFKL--TN-DLKVKI---- 385 (770)
Q Consensus 318 ~--~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D--~~~I~~i--~~-~G~v~~---- 385 (770)
. +|++..+..... ...-..|.+++++| +| .||+++ ++.|..+ +. +|++..
T Consensus 174 ~~~~g~~~~~~~~~~-----------------~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~ 235 (365)
T 1jof_A 174 KLASGEVELVGSVDA-----------------PDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHS 235 (365)
T ss_dssp ECTTSCEEEEEEEEC-----------------SSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred ECCCCCEEEeeeEec-----------------CCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccce
Confidence 4 466543221000 00013589999999 77 588887 4666554 43 466432
Q ss_pred EecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEE-EcCCCC-EEEEeCCCC-----ceeeEEEEc
Q psy4832 386 VAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALA-FSPTGD-LYIADIDAR-----KVNALRVID 458 (770)
Q Consensus 386 vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~gia-vd~~G~-lyVaD~~~~-----ri~~i~~i~ 458 (770)
+...+... .+.. .. . .....|.+++ ++|+|+ ||+++...+ +| ++..++
T Consensus 236 ~~~~~~~~----~g~~------------------~~-~-~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i-~v~~~~ 290 (365)
T 1jof_A 236 FPLIPPGI----PDRD------------------PE-T-GKGLYRADVCALTFSGKYMFASSRANKFELQGYI-AGFKLR 290 (365)
T ss_dssp EESSCTTC----CCBC------------------TT-T-SSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEE-EEEEEC
T ss_pred EEcCCCCc----CCcc------------------cc-c-ccccccccEEEECCCCCEEEEECCCCCCCCCCeE-EEEEEC
Confidence 22111100 0000 00 0 0122589999 999997 899887554 44 334444
Q ss_pred CCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcC---CC-cEEEEcCCCceEEee
Q psy4832 459 STGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSP---DG-VVNVADQGSLHILAL 527 (770)
Q Consensus 459 ~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~---dG-~lyvaD~~~~~I~~i 527 (770)
.+|++..+..... ..-..|.+++++| || .||+++..++.|..+
T Consensus 291 ~~g~~~~~~~~~~--------------------------~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~ 337 (365)
T 1jof_A 291 DCGSIEKQLFLSP--------------------------TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY 337 (365)
T ss_dssp TTSCEEEEEEEEE--------------------------CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred CCCCEEEeeeeee--------------------------cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEE
Confidence 5677654321000 0012367889999 67 578888766666544
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.05 E-value=5.6e-07 Score=97.52 Aligned_cols=224 Identities=20% Similarity=0.319 Sum_probs=145.9
Q ss_pred CceEEEEcCCCC-EEEEeC--ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCcc
Q psy4832 181 TPVALTSGPDGS-LYVGDF--NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVA 256 (770)
Q Consensus 181 ~P~~la~~~dG~-lyv~d~--~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~ 256 (770)
.|.++++.|+|. ||++.. +.|+.++. +|+....+... ..+..++++|.+..||++....+.|+.++..
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~----~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~---- 104 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG----SSPQGVAVSPDGKQVYVTNMASSTLSVIDTT---- 104 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETTTTEEEEEETT----
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC----CCccceEECCCCCEEEEEECCCCEEEEEECC----
Confidence 478999999997 667763 58999986 57766655422 2789999998666799999888899988532
Q ss_pred CCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEECC-CCcEEEeecCCCCC
Q psy4832 257 DPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVSP-EGIIHTLIGHHKHH 332 (770)
Q Consensus 257 ~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id~-~G~i~t~~g~~~~~ 332 (770)
++........ -..|.+++++++|. ||++.... |+.+|. .++.......+
T Consensus 105 --~~~~~~~~~~----------------------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--- 157 (391)
T 1l0q_A 105 --SNTVAGTVKT----------------------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG--- 157 (391)
T ss_dssp --TTEEEEEEEC----------------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC---
T ss_pred --CCeEEEEEeC----------------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC---
Confidence 2333222211 11467999999887 77776644 888885 45544433221
Q ss_pred CCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEe--CCEEEEEcCC-CcEEEEecCCCCCCCCCCCCcccccccc
Q psy4832 333 NIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID--DRVIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQS 408 (770)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~ 408 (770)
..|.+++++| ++ .||++. ++.|+.++.. ++.......
T Consensus 158 -------------------~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------------------- 198 (391)
T 1l0q_A 158 -------------------RSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKV------------------- 198 (391)
T ss_dssp -------------------SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEEC-------------------
T ss_pred -------------------CCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCeEEEEEec-------------------
Confidence 2467899999 66 577876 5788888854 443322210
Q ss_pred ccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeC--CCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCcc
Q psy4832 409 KTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADI--DARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAE 484 (770)
Q Consensus 409 ~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~--~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~ 484 (770)
-..|.+++++++|. ||++.. .++ .|+.++. +++.......
T Consensus 199 ------------------~~~~~~~~~~~~g~~l~~~~~~~~~~---~v~~~d~~~~~~~~~~~~--------------- 242 (391)
T 1l0q_A 199 ------------------EAAPSGIAVNPEGTKAYVTNVDKYFN---TVSMIDTGTNKITARIPV--------------- 242 (391)
T ss_dssp ------------------SSEEEEEEECTTSSEEEEEEECSSCC---EEEEEETTTTEEEEEEEC---------------
T ss_pred ------------------CCCccceEECCCCCEEEEEecCcCCC---cEEEEECCCCeEEEEEec---------------
Confidence 12478999999987 777764 333 3667775 3443222110
Q ss_pred cccCccCcccccceecCCeeEEEEcCCCc-EEEEcCCCceEEeeec
Q psy4832 485 FEKNSKETLLTSTARFTSISALSVSPDGV-VNVADQGSLHILALQH 529 (770)
Q Consensus 485 ~~~~~~d~~~~~~~~l~~P~giav~~dG~-lyvaD~~~~~I~~i~~ 529 (770)
-..|.+++++|+|. ||++...+++|+.+..
T Consensus 243 ---------------~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 243 ---------------GPDPAGIAVTPDGKKVYVALSFXNTVSVIDT 273 (391)
T ss_dssp ---------------CSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred ---------------CCCccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence 12478899999995 6788766666665543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.2e-07 Score=99.99 Aligned_cols=272 Identities=15% Similarity=0.170 Sum_probs=164.5
Q ss_pred CceEEEEcCCCCEEEEeC--ceEEEEcCC-CcEEEEeccC--cccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCc
Q psy4832 181 TPVALTSGPDGSLYVGDF--NLVRRLTPE-GNVFTVLQLS--ATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESV 255 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~--~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~ 255 (770)
.|.++++.|++.++++.. +.|+.++.+ |+....+... .........++++| ++.+|++....+.|+.++.
T Consensus 124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~---- 198 (433)
T 3bws_A 124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDL---- 198 (433)
T ss_dssp CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEET----
T ss_pred CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEEC----
Confidence 366788999888888875 469999865 6666544211 12233567899986 8999999998889988853
Q ss_pred cCCCCcE-EEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCC-C-eEEECC-CCcEEEeecCCC
Q psy4832 256 ADPSINW-EVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGT-N-IRVVSP-EGIIHTLIGHHK 330 (770)
Q Consensus 256 ~~~~g~~-~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~-~-Ir~id~-~G~i~t~~g~~~ 330 (770)
.++.. ..+.+. -..|.+++++++|. ||++... + |+.+|. .+.....+...
T Consensus 199 --~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~- 253 (433)
T 3bws_A 199 --KTLAYKATVDLT----------------------GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI- 253 (433)
T ss_dssp --TTCCEEEEEECS----------------------SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-
T ss_pred --CCceEEEEEcCC----------------------CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-
Confidence 12222 222211 12578999999886 7777743 3 888885 45443332111
Q ss_pred CCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEe---------CCEEEEEcC-CCcEEEEecCCCCCCCCCCC
Q psy4832 331 HHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID---------DRVIFKLTN-DLKVKIVAGIPLHCRTGDKD 399 (770)
Q Consensus 331 ~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D---------~~~I~~i~~-~G~v~~vaG~~~~~~~~~~~ 399 (770)
..|.+++++| ++ .|+++. ++.|+.++. ++++......
T Consensus 254 ---------------------~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~---------- 301 (433)
T 3bws_A 254 ---------------------GLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP---------- 301 (433)
T ss_dssp ---------------------SEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE----------
T ss_pred ---------------------CCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC----------
Confidence 1378999999 66 577766 246777774 3443322210
Q ss_pred CccccccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCc
Q psy4832 400 KRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNC 477 (770)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~ 477 (770)
-..|.+++++|+|. ||++....++ |+.++. ++++......
T Consensus 302 ---------------------------~~~~~~~~~~~~g~~l~~~~~~~~~---v~v~d~~~~~~~~~~~~-------- 343 (433)
T 3bws_A 302 ---------------------------PGNKRHIVSGNTENKIYVSDMCCSK---IEVYDLKEKKVQKSIPV-------- 343 (433)
T ss_dssp ---------------------------EECEEEEEECSSTTEEEEEETTTTE---EEEEETTTTEEEEEEEC--------
T ss_pred ---------------------------CCCcceEEECCCCCEEEEEecCCCE---EEEEECCCCcEEEEecC--------
Confidence 12478999999985 8899877764 566665 3443322210
Q ss_pred CCCCCcccccCccCcccccceecCCeeEEEEcCCCc-EEEEcCCCceEEeeecCCcccCCCCcEEEeCCCCCcEEEEecC
Q psy4832 478 NTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGV-VNVADQGSLHILALQHYLPTHDEHGEFKIPYPATNEIYVFNRY 556 (770)
Q Consensus 478 ~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~-lyvaD~~~~~I~~i~~~~~~~~~~g~~~i~~~~~~e~yvfd~~ 556 (770)
...|.+++++|+|. ||++...++.+ . ..+-......+.++++|..
T Consensus 344 ----------------------~~~~~~~~~s~dg~~l~~~~~~~~~~-----~-------~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 344 ----------------------FDKPNTIALSPDGKYLYVSCRGPNHP-----T-------EGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp ----------------------SSSEEEEEECTTSSEEEEEECCCCCT-----T-------TCTTSCCSSCCEEEEEETT
T ss_pred ----------------------CCCCCeEEEcCCCCEEEEEecCCCcc-----c-------cccccccccceEEEEEECC
Confidence 13478999999996 77877655432 0 0000112334567777753
Q ss_pred -CceEEEEcCCCCCcEEEEEecCCCCCCceEEEECC
Q psy4832 557 -GQHITTRDMTSGKPRYSFLYSKNTSFGKLSTITDA 591 (770)
Q Consensus 557 -G~~~~t~d~~tg~~~y~~~Yd~~~~~G~L~~vtd~ 591 (770)
++.+..... +.....+.+..+ |+...+...
T Consensus 390 ~~~~~~~~~~--~~~~~~~~~s~d---g~~l~~~~~ 420 (433)
T 3bws_A 390 TDTVKEFWEA--GNQPTGLDVSPD---NRYLVISDF 420 (433)
T ss_dssp TTEEEEEEEC--SSSEEEEEECTT---SCEEEEEET
T ss_pred CCcEEEEecC--CCCCceEEEcCC---CCEEEEEEC
Confidence 444444433 233445556655 666555554
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-07 Score=93.41 Aligned_cols=197 Identities=15% Similarity=0.129 Sum_probs=127.6
Q ss_pred eEEEEcCCCCEEEEeC----ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 183 VALTSGPDGSLYVGDF----NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 183 ~~la~~~dG~lyv~d~----~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
++|.++ ++.||++.. +.|+++|+. |++...+.++. -....||+++ ++.||++++.++++++++..
T Consensus 46 qGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~--~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~----- 115 (262)
T 3nol_A 46 EGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK--RYFGEGISDW--KDKIVGLTWKNGLGFVWNIR----- 115 (262)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT--TCCEEEEEEE--TTEEEEEESSSSEEEEEETT-----
T ss_pred ceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC--ccceeEEEEe--CCEEEEEEeeCCEEEEEECc-----
Confidence 788998 789999875 289999964 88887665422 1234567776 78999999999999999632
Q ss_pred CCCcEE-EEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECCC-CcEEEeecCCCCCCC
Q psy4832 258 PSINWE-VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSPE-GIIHTLIGHHKHHNI 334 (770)
Q Consensus 258 ~~g~~~-~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~~-G~i~t~~g~~~~~~~ 334 (770)
+.... .+.-. ..+.|++.| .+.||++|..+ |+++|+. .++..-+..+..
T Consensus 116 -t~~~~~ti~~~-----------------------~eG~glt~d-g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~--- 167 (262)
T 3nol_A 116 -NLRQVRSFNYD-----------------------GEGWGLTHN-DQYLIMSDGTPVLRFLDPESLTPVRTITVTAH--- 167 (262)
T ss_dssp -TCCEEEEEECS-----------------------SCCCCEEEC-SSCEEECCSSSEEEEECTTTCSEEEEEECEET---
T ss_pred -cCcEEEEEECC-----------------------CCceEEecC-CCEEEEECCCCeEEEEcCCCCeEEEEEEeccC---
Confidence 23322 22110 034577765 45799999766 9999976 455433322110
Q ss_pred cCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcC-CCcEEEEecCC-CCCCCCCCCCcccccccccc
Q psy4832 335 WSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTN-DLKVKIVAGIP-LHCRTGDKDKRDFKDKQSKT 410 (770)
Q Consensus 335 ~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~-~G~v~~vaG~~-~~~~~~~~~~~~~~~~~~~~ 410 (770)
...+..++.|.+. +|.||+.. .+.|.+||+ +|++....-.+ ......
T Consensus 168 -------------g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~-------------- 218 (262)
T 3nol_A 168 -------------GEELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAG-------------- 218 (262)
T ss_dssp -------------TEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSC--------------
T ss_pred -------------CccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccc--------------
Confidence 0124456678876 79999987 689999995 68876554321 100000
Q ss_pred ccccccCCcccccccccCCeeEEEEcCCC-CEEEEeCCCCceeeEEEE
Q psy4832 411 KKSTVQDDSVRASNMDLGSLTALAFSPTG-DLYIADIDARKVNALRVI 457 (770)
Q Consensus 411 ~~~~~~~~~~~a~~~~l~~P~giavd~~G-~lyVaD~~~~ri~~i~~i 457 (770)
........|+|||+||++ .|||+.-.=-++..|+..
T Consensus 219 -----------~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~ 255 (262)
T 3nol_A 219 -----------PLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLT 255 (262)
T ss_dssp -----------SCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred -----------cccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence 001224569999999965 599998765566666544
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=9.6e-07 Score=93.25 Aligned_cols=238 Identities=13% Similarity=0.142 Sum_probs=134.6
Q ss_pred CCEEEEeC--ceEEEEcC--CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEE
Q psy4832 191 GSLYVGDF--NLVRRLTP--EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAV 266 (770)
Q Consensus 191 G~lyv~d~--~~I~~i~~--~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~va 266 (770)
..||+++. +.|+.++. +|+...+... .....|.+++++|.+..||++...++.|..++.. ...+....+.
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~----~~~~~~~~~~ 78 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA----PDDGALTFAA 78 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC----TTTCCEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeE--ecCCCCceEEECCCCCEEEEeecCCCeEEEEEec----CCCCceeecc
Confidence 45677754 46666654 4654332211 1234688999998555699999877787776431 0134443332
Q ss_pred CCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCC-C-eEEECC-CCcEEEeecCCCCCCCcCCCccCC
Q psy4832 267 GSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGT-N-IRVVSP-EGIIHTLIGHHKHHNIWSPFNCHR 342 (770)
Q Consensus 267 G~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~-~-Ir~id~-~G~i~t~~g~~~~~~~~~p~~~~~ 342 (770)
.... -..|.+|+++++|. ||++... + |+.++. +|........-
T Consensus 79 ~~~~--------------------~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~------------- 125 (343)
T 1ri6_A 79 ESAL--------------------PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV------------- 125 (343)
T ss_dssp EEEC--------------------SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-------------
T ss_pred cccc--------------------CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc-------------
Confidence 1000 11588999999997 8888753 3 666654 33222111100
Q ss_pred CcccccccccCcceEEEeCCCC-eEEEEe--CCEEEEEc--CCCcEEEEecCCCCCCCCCCCCccccccccccccccccC
Q psy4832 343 SFPASTAQLQWPTGLALSPLDD-SLHFID--DRVIFKLT--NDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQD 417 (770)
Q Consensus 343 ~~~~~~~~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~--~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (770)
.....|.+++++| ++ .||+++ .+.|..++ .++++..+.......
T Consensus 126 ------~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~------------------------ 174 (343)
T 1ri6_A 126 ------EGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT------------------------ 174 (343)
T ss_dssp ------CCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC------------------------
T ss_pred ------cCCCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeeccccccc------------------------
Confidence 0122478999999 66 589887 47777766 336654322000000
Q ss_pred CcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC---CCcEEEeecCccCCCCCcCCCCCcccccCccCcc
Q psy4832 418 DSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS---TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETL 493 (770)
Q Consensus 418 ~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~---~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~ 493 (770)
..-..|.+++++|+|. ||+++....+ |..++. .|++..+.-... .
T Consensus 175 -------~~~~~~~~~~~~pdg~~l~~~~~~~~~---i~~~~~~~~~g~~~~~~~~~~---------------------~ 223 (343)
T 1ri6_A 175 -------VEGAGPRHMVFHPNEQYAYCVNELNSS---VDVWELKDPHGNIECVQTLDM---------------------M 223 (343)
T ss_dssp -------STTCCEEEEEECTTSSEEEEEETTTTE---EEEEESSCTTSCCEEEEEEEC---------------------S
T ss_pred -------CCCCCcceEEECCCCCEEEEEeCCCCE---EEEEEecCCCCcEEEEeeccc---------------------c
Confidence 0013488999999998 8899877665 444443 344322110000 0
Q ss_pred cccceecCCeeEEEEcCCC-cEEEEcCCCceEEeeec
Q psy4832 494 LTSTARFTSISALSVSPDG-VVNVADQGSLHILALQH 529 (770)
Q Consensus 494 ~~~~~~l~~P~giav~~dG-~lyvaD~~~~~I~~i~~ 529 (770)
.........|.+++++|+| .||+++..++.|..+..
T Consensus 224 ~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~ 260 (343)
T 1ri6_A 224 PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSV 260 (343)
T ss_dssp CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CccccccCCccceEECCCCCEEEEEecCCCEEEEEEE
Confidence 0000113458899999999 57888877777766544
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-07 Score=100.45 Aligned_cols=269 Identities=13% Similarity=0.207 Sum_probs=157.1
Q ss_pred CCccceeeeeecCCCeEEECCCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCCEEEEeC
Q psy4832 119 GWSLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDF 198 (770)
Q Consensus 119 gw~l~~~~~~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~ 198 (770)
-|+...+.. .....+.+.+| .+|+.. ..+.|..+..+|...-. .. ..-.....++++++|.|||+..
T Consensus 12 ~W~~~~~~~--~~~~~~~d~~g-~l~v~t-~~~~l~~~d~~g~~~~~----~~-----~~~~~~~~~~~~~~g~l~v~t~ 78 (330)
T 3hxj_A 12 KWEFLIGNS--IDSSPILAKNG-TIYLGS-SNKNLYAINTDGSVKWF----FK-----SGEIIECRPSIGKDGTIYFGSD 78 (330)
T ss_dssp CCTTTSCEE--ECCCCEECTTS-CEECSS-TTTTTEEECTTSCEEES----SC-----GGGEEEECCEETTTTEECCSSC
T ss_pred EEEEeCCCC--cccCceEccCC-eEEEEc-CCCEEEEECCCCcEEEE----Ee-----cCCCcccceEEecCCcEEEecC
Confidence 465543332 12345555566 467665 44444455444443210 00 0011235678889999999887
Q ss_pred ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCC
Q psy4832 199 NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDET 278 (770)
Q Consensus 199 ~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~ 278 (770)
+ |.+++++|+....+..... .....++. ++.||+... ++.|+++ +++|..........
T Consensus 79 ~-l~~~d~~g~~~~~~~~~~~---~~~~~~~~--~~~l~v~t~-~~~l~~~-------d~~g~~~~~~~~~~-------- 136 (330)
T 3hxj_A 79 K-VYAINPDGTEKWRFDTKKA---IVSDFTIF--EDILYVTSM-DGHLYAI-------NTDGTEKWRFKTKK-------- 136 (330)
T ss_dssp E-EEEECCCGGGGGGSCC--------CCEEEE--TTEEEEECT-TSEEEEE-------CTTSCEEEEEECSS--------
T ss_pred c-EEEECCCCcEEEEEECCCC---cccCceEE--CCEEEEEec-CCEEEEE-------cCCCCEEEEEcCCC--------
Confidence 8 9999988765432221111 11234454 788998764 4688888 44455432221110
Q ss_pred CcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceE
Q psy4832 279 NCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGL 357 (770)
Q Consensus 279 ~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gl 357 (770)
.....++++++|.||++.... |..++++|.+........ .....+
T Consensus 137 -------------~~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~---------------------~~~~~~ 182 (330)
T 3hxj_A 137 -------------AIYATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTND---------------------AITSAA 182 (330)
T ss_dssp -------------CCCSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEECSS---------------------CCCSCC
T ss_pred -------------ceeeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEecCC---------------------Cceeee
Confidence 013456788899999998645 999998886644332110 123456
Q ss_pred EEeCCCCeEEEEeCCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcC
Q psy4832 358 ALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSP 437 (770)
Q Consensus 358 a~d~~~g~lyv~D~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~ 437 (770)
++++ +|.||++. +.|++++++|+.......+. ....++++++
T Consensus 183 ~~d~-~g~l~v~t-~~l~~~d~~g~~~~~~~~~~------------------------------------~~~~~~~~~~ 224 (330)
T 3hxj_A 183 SIGK-DGTIYFGS-DKVYAINPDGTEKWNFYAGY------------------------------------WTVTRPAISE 224 (330)
T ss_dssp EECT-TCCEEEES-SSEEEECTTSCEEEEECCSS------------------------------------CCCSCCEECT
T ss_pred EEcC-CCEEEEEe-CEEEEECCCCcEEEEEccCC------------------------------------cceeceEECC
Confidence 7887 89999999 99999998886543331110 1246678899
Q ss_pred CCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEE
Q psy4832 438 TGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVA 517 (770)
Q Consensus 438 ~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyva 517 (770)
+|.||++..++. +..++++|......... . ..+..++++++|.||++
T Consensus 225 ~g~l~v~t~~~g----l~~~~~~g~~~~~~~~~--------------------~---------~~~~~~~~~~~g~l~v~ 271 (330)
T 3hxj_A 225 DGTIYVTSLDGH----LYAINPDGTEKWRFKTG--------------------K---------RIESSPVIGNTDTIYFG 271 (330)
T ss_dssp TSCEEEEETTTE----EEEECTTSCEEEEEECS--------------------S---------CCCSCCEECTTSCEEEE
T ss_pred CCeEEEEcCCCe----EEEECCCCCEeEEeeCC--------------------C---------CccccceEcCCCeEEEe
Confidence 999999987543 66778877654322111 0 11234677888999998
Q ss_pred cCCCceEEeee
Q psy4832 518 DQGSLHILALQ 528 (770)
Q Consensus 518 D~~~~~I~~i~ 528 (770)
.... .|.++.
T Consensus 272 t~~g-gl~~~d 281 (330)
T 3hxj_A 272 SYDG-HLYAIN 281 (330)
T ss_dssp CTTC-EEEEEC
T ss_pred cCCC-CEEEEC
Confidence 7543 455554
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-06 Score=96.56 Aligned_cols=226 Identities=18% Similarity=0.182 Sum_probs=144.7
Q ss_pred CceEEEEcCCCCEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 181 TPVALTSGPDGSLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
...++++.++|.+|++.. +.|+.++.+ ++....+. .....+..++++|.+..||++....+.|+.++.
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~------ 241 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD---LTGKWSKILLYDPIRDLVYCSNWISEDISVIDR------ 241 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE---CSSSSEEEEEEETTTTEEEEEETTTTEEEEEET------
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc---CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEEC------
Confidence 467889999999999876 589888854 56555442 234568999999866678899988889998853
Q ss_pred CCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeC--------C-CeEEECCC-CcEEEee
Q psy4832 258 PSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADG--------T-NIRVVSPE-GIIHTLI 326 (770)
Q Consensus 258 ~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~--------~-~Ir~id~~-G~i~t~~ 326 (770)
.++........ -..|.+++++++|. ||++.. . .|+.++.. +.+....
T Consensus 242 ~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~ 299 (433)
T 3bws_A 242 KTKLEIRKTDK----------------------IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI 299 (433)
T ss_dssp TTTEEEEECCC----------------------CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE
T ss_pred CCCcEEEEecC----------------------CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec
Confidence 12332211110 11378999999885 666652 2 27777753 4443333
Q ss_pred cCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEe--CCEEEEEcCC-CcEEEEecCCCCCCCCCCCCcc
Q psy4832 327 GHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID--DRVIFKLTND-LKVKIVAGIPLHCRTGDKDKRD 402 (770)
Q Consensus 327 g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~ 402 (770)
+. -..|.+++++| ++ .||++. .+.|..++.+ +++......
T Consensus 300 ~~----------------------~~~~~~~~~~~-~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~------------- 343 (433)
T 3bws_A 300 GP----------------------PGNKRHIVSGN-TENKIYVSDMCCSKIEVYDLKEKKVQKSIPV------------- 343 (433)
T ss_dssp EE----------------------EECEEEEEECS-STTEEEEEETTTTEEEEEETTTTEEEEEEEC-------------
T ss_pred cC----------------------CCCcceEEECC-CCCEEEEEecCCCEEEEEECCCCcEEEEecC-------------
Confidence 11 12577899999 66 688886 5788888854 443322210
Q ss_pred ccccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCce-----------eeEEEEcC-CCcEEEeecC
Q psy4832 403 FKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKV-----------NALRVIDS-TGRMFDFAGR 469 (770)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri-----------~~i~~i~~-~G~i~~~aG~ 469 (770)
...|.+++++|+|. ||++....+.+ ..|+.++. ++++......
T Consensus 344 ------------------------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~ 399 (433)
T 3bws_A 344 ------------------------FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA 399 (433)
T ss_dssp ------------------------SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred ------------------------CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC
Confidence 13478999999997 88888764321 13566664 4443322210
Q ss_pred ccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCc-EEEEcCCCceEEee
Q psy4832 470 WQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGV-VNVADQGSLHILAL 527 (770)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~-lyvaD~~~~~I~~i 527 (770)
-..|.+++++|+|. |+++...++.|+.+
T Consensus 400 ------------------------------~~~~~~~~~s~dg~~l~~~~~~d~~i~v~ 428 (433)
T 3bws_A 400 ------------------------------GNQPTGLDVSPDNRYLVISDFLDHQIRVY 428 (433)
T ss_dssp ------------------------------SSSEEEEEECTTSCEEEEEETTTTEEEEE
T ss_pred ------------------------------CCCCceEEEcCCCCEEEEEECCCCeEEEE
Confidence 12488999999995 46666655565544
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.6e-07 Score=94.84 Aligned_cols=204 Identities=10% Similarity=0.085 Sum_probs=128.2
Q ss_pred cceeEEEEeCCCCcEEEEeC--CCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEE
Q psy4832 222 SYQYYLALSPADGHLYISDA--EKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI 299 (770)
Q Consensus 222 ~~p~~lav~p~~g~lyvsd~--~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIav 299 (770)
..|.||++++ ++.||++.. +.+.|.+++. .+|.+....-.+. ..++.||++
T Consensus 21 ~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~------~tg~v~~~i~l~~--------------------~~fgeGi~~ 73 (266)
T 2iwa_A 21 AFTQGLVYAE-NDTLFESTGLYGRSSVRQVAL------QTGKVENIHKMDD--------------------SYFGEGLTL 73 (266)
T ss_dssp CCEEEEEECS-TTEEEEEECSTTTCEEEEEET------TTCCEEEEEECCT--------------------TCCEEEEEE
T ss_pred CCcccEEEeC-CCeEEEECCCCCCCEEEEEEC------CCCCEEEEEecCC--------------------CcceEEEEE
Confidence 4689999997 589999974 4789999963 3455433221111 124568888
Q ss_pred ccCCcEEEEeCCC--eEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe-CCEEE
Q psy4832 300 KADKTMFIADGTN--IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID-DRVIF 375 (770)
Q Consensus 300 d~~G~lYvaD~~~--Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D-~~~I~ 375 (770)
+ .+.||++.... +.++|++ +++..-+..+ . ..+.+|+.| .+.||+++ ++.|.
T Consensus 74 ~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~--------------------~~g~glt~D--g~~l~vs~gs~~l~ 129 (266)
T 2iwa_A 74 L-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-M--------------------KDGWGLATD--GKILYGSDGTSILY 129 (266)
T ss_dssp E-TTEEEEEETTCSEEEEEETTTTEEEEEEECC-S--------------------SSCCEEEEC--SSSEEEECSSSEEE
T ss_pred e-CCEEEEEEecCCEEEEEECCCCcEEEEEECC-C--------------------CCeEEEEEC--CCEEEEECCCCeEE
Confidence 7 56899999765 8899965 5443333221 0 023344444 57799999 68999
Q ss_pred EEcCCC-cEE-EEe-cCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCcee
Q psy4832 376 KLTNDL-KVK-IVA-GIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVN 452 (770)
Q Consensus 376 ~i~~~G-~v~-~va-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~ 452 (770)
.||+.. ++. .+. |.. ...+..|+++.+. +|.||++.+..+.
T Consensus 130 viD~~t~~v~~~I~Vg~~---------------------------------~~p~~~~nele~~-dg~lyvn~~~~~~-- 173 (266)
T 2iwa_A 130 EIDPHTFKLIKKHNVKYN---------------------------------GHRVIRLNELEYI-NGEVWANIWQTDC-- 173 (266)
T ss_dssp EECTTTCCEEEEEECEET---------------------------------TEECCCEEEEEEE-TTEEEEEETTSSE--
T ss_pred EEECCCCcEEEEEEECCC---------------------------------CcccccceeEEEE-CCEEEEecCCCCe--
Confidence 999754 433 222 110 0124568999887 7899999987764
Q ss_pred eEEEEcC-CCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCC-cEEEEcCCCceEEeeec
Q psy4832 453 ALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDG-VVNVADQGSLHILALQH 529 (770)
Q Consensus 453 ~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG-~lyvaD~~~~~I~~i~~ 529 (770)
|.+||+ +|++....-.. +. . .............|.|||++|+| .+||+.....++..|.-
T Consensus 174 -V~vID~~tg~V~~~I~~~--g~----------~----~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 174 -IARISAKDGTLLGWILLP--NL----------R----KKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp -EEEEETTTCCEEEEEECH--HH----------H----HHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred -EEEEECCCCcEEEEEECC--Cc----------c----cccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 788887 77764432111 00 0 00000001123569999999987 68999999888887754
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-06 Score=87.41 Aligned_cols=198 Identities=15% Similarity=0.106 Sum_probs=127.0
Q ss_pred ceEEEEcCCCCEEEEeC----ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCcc
Q psy4832 182 PVALTSGPDGSLYVGDF----NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVA 256 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~----~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~ 256 (770)
-.||.++. +.||++.. +.|+++++ +|++...+.++. -....|++++ ++.||++++.++++++++..
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~--~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~---- 93 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP--PYFGAGIVAW--RDRLIQLTWRNHEGFVYDLA---- 93 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT--TCCEEEEEEE--TTEEEEEESSSSEEEEEETT----
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC--CcceeEEEEe--CCEEEEEEeeCCEEEEEECC----
Confidence 36889985 89999976 38999996 588887664322 2234567776 79999999999999999632
Q ss_pred CCCCcEE-EEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECCC-CcEEEeecCCCCCC
Q psy4832 257 DPSINWE-VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSPE-GIIHTLIGHHKHHN 333 (770)
Q Consensus 257 ~~~g~~~-~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~~-G~i~t~~g~~~~~~ 333 (770)
+.... .+.-. ..+.||+.| .+.||++|..+ |+++|+. .++..-+..+..
T Consensus 94 --tl~~~~ti~~~-----------------------~~Gwglt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~-- 145 (243)
T 3mbr_X 94 --TLTPRARFRYP-----------------------GEGWALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG-- 145 (243)
T ss_dssp --TTEEEEEEECS-----------------------SCCCEEEEC-SSCEEEECSSSEEEEECTTTCCEEEEEECEET--
T ss_pred --cCcEEEEEeCC-----------------------CCceEEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEEEEccC--
Confidence 22222 22110 035577765 46799999866 9999976 344433322211
Q ss_pred CcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcC-CCcEEEEecCC-CCCCCCCCCCccccccccc
Q psy4832 334 IWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTN-DLKVKIVAGIP-LHCRTGDKDKRDFKDKQSK 409 (770)
Q Consensus 334 ~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~-~G~v~~vaG~~-~~~~~~~~~~~~~~~~~~~ 409 (770)
...+..++.|... +|.||+.. ++.|.+||+ +|++....-.+ .......
T Consensus 146 --------------g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~------------ 197 (243)
T 3mbr_X 146 --------------GRPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADA------------ 197 (243)
T ss_dssp --------------TEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTS------------
T ss_pred --------------CcccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccc------------
Confidence 1124456677776 89999887 689999995 68876444221 1110000
Q ss_pred cccccccCCcccccccccCCeeEEEEcCCC-CEEEEeCCCCceeeEEE
Q psy4832 410 TKKSTVQDDSVRASNMDLGSLTALAFSPTG-DLYIADIDARKVNALRV 456 (770)
Q Consensus 410 ~~~~~~~~~~~~a~~~~l~~P~giavd~~G-~lyVaD~~~~ri~~i~~ 456 (770)
........|+|||+||++ .|||+--.=-++..|+.
T Consensus 198 ------------~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~ 233 (243)
T 3mbr_X 198 ------------LTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRL 233 (243)
T ss_dssp ------------CCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred ------------ccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEE
Confidence 001223569999999964 59999876555555544
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=98.84 E-value=9.5e-06 Score=87.70 Aligned_cols=213 Identities=20% Similarity=0.336 Sum_probs=132.6
Q ss_pred CEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECC
Q psy4832 192 SLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGS 268 (770)
Q Consensus 192 ~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~ 268 (770)
.+|++.. +.|+.++.+ |+....+.. -..+..++++|.+..||++...++.|+.++. .++........
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~------~~~~~~~~~~~ 72 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPV----GSNPMGAVISPDGTKVYVANAHSNDVSIIDT------ATNNVIATVPA 72 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEEEGGGTEEEEEET------TTTEEEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeec----CCCcceEEECCCCCEEEEECCCCCeEEEEEC------CCCeEEEEEEC
Confidence 3555554 467777653 555554432 2348899999855568899888889988853 23433322210
Q ss_pred CccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCC-C-eEEECCC-CcEEEeecCCCCCCCcCCCccCCCc
Q psy4832 269 GERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGT-N-IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSF 344 (770)
Q Consensus 269 g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~-~-Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~ 344 (770)
-..|.+++++++|. ||++... + |+.+|.. +........+
T Consensus 73 ----------------------~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~--------------- 115 (391)
T 1l0q_A 73 ----------------------GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG--------------- 115 (391)
T ss_dssp ----------------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS---------------
T ss_pred ----------------------CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC---------------
Confidence 01578999999887 7788754 3 8888865 4444333211
Q ss_pred ccccccccCcceEEEeCCCCe-EEEEe--CCEEEEEcC-CCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcc
Q psy4832 345 PASTAQLQWPTGLALSPLDDS-LHFID--DRVIFKLTN-DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420 (770)
Q Consensus 345 ~~~~~~l~~P~gla~d~~~g~-lyv~D--~~~I~~i~~-~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (770)
..|.+++++| ++. ||++. ++.|+.++. .++.......
T Consensus 116 -------~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------------------------------- 156 (391)
T 1l0q_A 116 -------KSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSV------------------------------- 156 (391)
T ss_dssp -------SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEEC-------------------------------
T ss_pred -------CCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEec-------------------------------
Confidence 1468999999 665 77876 578888884 4544332210
Q ss_pred cccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCcccccCccCcccccce
Q psy4832 421 RASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTA 498 (770)
Q Consensus 421 ~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 498 (770)
-..|.+++++++|. ||++....+. |+.+|. +++.......
T Consensus 157 ------~~~~~~~~~~~dg~~l~~~~~~~~~---v~~~d~~~~~~~~~~~~----------------------------- 198 (391)
T 1l0q_A 157 ------GRSPKGIAVTPDGTKVYVANFDSMS---ISVIDTVTNSVIDTVKV----------------------------- 198 (391)
T ss_dssp ------CSSEEEEEECTTSSEEEEEETTTTE---EEEEETTTTEEEEEEEC-----------------------------
T ss_pred ------CCCcceEEECCCCCEEEEEeCCCCE---EEEEECCCCeEEEEEec-----------------------------
Confidence 02378999999986 7788777664 666664 3443322210
Q ss_pred ecCCeeEEEEcCCCc-EEEEcC--CCceEEeeec
Q psy4832 499 RFTSISALSVSPDGV-VNVADQ--GSLHILALQH 529 (770)
Q Consensus 499 ~l~~P~giav~~dG~-lyvaD~--~~~~I~~i~~ 529 (770)
-..|.+++++|+|. ||++.. .++.|+.++.
T Consensus 199 -~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 199 -EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp -SSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred -CCCccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence 12477899999885 566654 4556655543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-06 Score=94.59 Aligned_cols=226 Identities=12% Similarity=0.100 Sum_probs=121.1
Q ss_pred EEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCc
Q psy4832 202 RRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNC 280 (770)
Q Consensus 202 ~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~ 280 (770)
.++++ +|+...+..........|.+++++|.+..||+++.. .|..++. +++|....+.....
T Consensus 19 ~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~--~v~~~~~-----~~~g~~~~~~~~~~---------- 81 (365)
T 1jof_A 19 VQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK--KWSSFAV-----KSPTEIVHEASHPI---------- 81 (365)
T ss_dssp EEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT--EEEEEEE-----EETTEEEEEEEEEC----------
T ss_pred EEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc--eEEEEEE-----CCCCCEEEeeEeec----------
Confidence 34554 455543321111234578999999855559988876 6665532 12444432221000
Q ss_pred CCCcccccccccCcceEEEccCCc---EEEEe-------------CCC---eEEECCCCcEEEeecCCCCCCCcCCCccC
Q psy4832 281 GDNGPALAAKLSHPKGLAIKADKT---MFIAD-------------GTN---IRVVSPEGIIHTLIGHHKHHNIWSPFNCH 341 (770)
Q Consensus 281 g~~g~~~~a~l~~P~gIavd~~G~---lYvaD-------------~~~---Ir~id~~G~i~t~~g~~~~~~~~~p~~~~ 341 (770)
-..|..++++++|. +|+++ ... ++.++.+|.+...+..-.
T Consensus 82 ----------~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~----------- 140 (365)
T 1jof_A 82 ----------GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE----------- 140 (365)
T ss_dssp ----------CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE-----------
T ss_pred ----------CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE-----------
Confidence 01266788999998 33443 122 444555665543221000
Q ss_pred CCcccccccccCcceEEEeCCCCe-EEEEe--CCEEEEEcC--CCcEEEEecCCCCCCCCCCCCcccccccccccccccc
Q psy4832 342 RSFPASTAQLQWPTGLALSPLDDS-LHFID--DRVIFKLTN--DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQ 416 (770)
Q Consensus 342 ~~~~~~~~~l~~P~gla~d~~~g~-lyv~D--~~~I~~i~~--~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (770)
......|.+++++| +|+ ||++| .+.|+.++. +|++..+......
T Consensus 141 ------~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~------------------------ 189 (365)
T 1jof_A 141 ------YQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAP------------------------ 189 (365)
T ss_dssp ------CCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS------------------------
T ss_pred ------eCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC------------------------
Confidence 00123688999999 775 88888 468888774 5765433211000
Q ss_pred CCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcEEE----eecCccCCCCCcCCCCCcccccCcc
Q psy4832 417 DDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRMFD----FAGRWQSDKKNCNTTNCAEFEKNSK 490 (770)
Q Consensus 417 ~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i~~----~aG~~~~~~~~~~~~~~~~~~~~~~ 490 (770)
..-..|.+++++|+|. ||++...++.| .+..++. +|++.. +...+ .+. . .
T Consensus 190 --------~~g~~p~~~~~spdg~~l~v~~~~~~~v-~v~~~~~~~g~~~~~~~~~~~~~-~~~-----------~---g 245 (365)
T 1jof_A 190 --------DPGDHPRWVAMHPTGNYLYALMEAGNRI-CEYVIDPATHMPVYTHHSFPLIP-PGI-----------P---D 245 (365)
T ss_dssp --------STTCCEEEEEECTTSSEEEEEETTTTEE-EEEEECTTTCCEEEEEEEEESSC-TTC-----------C---C
T ss_pred --------CCCCCCCEeEECCCCCEEEEEECCCCeE-EEEEEeCCCCcEEEccceEEcCC-CCc-----------C---C
Confidence 0013489999999996 89998776654 2334454 576432 21111 000 0 0
Q ss_pred CcccccceecCCeeEEE-EcCCCc-EEEEcCCCc
Q psy4832 491 ETLLTSTARFTSISALS-VSPDGV-VNVADQGSL 522 (770)
Q Consensus 491 d~~~~~~~~l~~P~gia-v~~dG~-lyvaD~~~~ 522 (770)
.. ........|.+++ ++|||. ||+++.+.+
T Consensus 246 ~~--~~~~~~~~~~~i~~~spdG~~l~v~~~~~~ 277 (365)
T 1jof_A 246 RD--PETGKGLYRADVCALTFSGKYMFASSRANK 277 (365)
T ss_dssp BC--TTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred cc--cccccccccccEEEECCCCCEEEEECCCCC
Confidence 00 0000122589999 999995 788876543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.5e-06 Score=96.32 Aligned_cols=197 Identities=7% Similarity=0.003 Sum_probs=121.3
Q ss_pred EcCCCCEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEE
Q psy4832 187 SGPDGSLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWE 263 (770)
Q Consensus 187 ~~~dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~ 263 (770)
++|+|.+||+.. +.|..++.+ |++...+..+ .. |.+++++|.+..||+++.. +.|..++... .++...
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g---~~-~~~v~~spdg~~l~v~~~d-~~V~v~D~~~----~t~~~~ 215 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG---YA-VHISRMSASGRYLLVIGRD-ARIDMIDLWA----KEPTKV 215 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECS---TT-EEEEEECTTSCEEEEEETT-SEEEEEETTS----SSCEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecC---cc-cceEEECCCCCEEEEECCC-CeEEEEECcC----CCCcEE
Confidence 678899999886 589999854 7777666422 12 8899999977789999887 8899985310 123221
Q ss_pred EEECCCccccCCCCCCcCCCcccccccccCcceEEEcc----CCc-EEEEeC-CC-eEEECC-CCcEEEeecCCCCCCCc
Q psy4832 264 VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA----DKT-MFIADG-TN-IRVVSP-EGIIHTLIGHHKHHNIW 335 (770)
Q Consensus 264 ~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~----~G~-lYvaD~-~~-Ir~id~-~G~i~t~~g~~~~~~~~ 335 (770)
...-. -..|.+|++++ +|. ||++.. .+ |..+|. .+++...+.......
T Consensus 216 ~~i~~----------------------g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~-- 271 (543)
T 1nir_A 216 AEIKI----------------------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV-- 271 (543)
T ss_dssp EEEEC----------------------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS--
T ss_pred EEEec----------------------CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc--
Confidence 11111 11589999999 886 888874 23 888874 354433332211000
Q ss_pred CCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCC-Cc-EE--EEecCCCCCCCCCCCCccccccccc
Q psy4832 336 SPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTND-LK-VK--IVAGIPLHCRTGDKDKRDFKDKQSK 409 (770)
Q Consensus 336 ~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~-G~-v~--~vaG~~~~~~~~~~~~~~~~~~~~~ 409 (770)
+.. ....-.++.+|++++.++.+|++. .+.|..++.. +. +. .+. .
T Consensus 272 ------~~~--~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~-------------------- 322 (543)
T 1nir_A 272 ------DTQ--TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-A-------------------- 322 (543)
T ss_dssp ------SSC--CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-C--------------------
T ss_pred ------Ccc--ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-c--------------------
Confidence 000 000012577899998444567765 5788888743 22 11 111 0
Q ss_pred cccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcEEE
Q psy4832 410 TKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRMFD 465 (770)
Q Consensus 410 ~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i~~ 465 (770)
-..|.+++++|+|+ ||++....+. |..+|. +|++..
T Consensus 323 -----------------~~~~~~~~~spdg~~l~va~~~~~~---v~v~D~~tg~l~~ 360 (543)
T 1nir_A 323 -----------------APFLHDGGWDSSHRYFMTAANNSNK---VAVIDSKDRRLSA 360 (543)
T ss_dssp -----------------CSSCCCEEECTTSCEEEEEEGGGTE---EEEEETTTTEEEE
T ss_pred -----------------CcCccCceECCCCCEEEEEecCCCe---EEEEECCCCeEEE
Confidence 13488999999998 7888876654 667775 666543
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-06 Score=90.88 Aligned_cols=207 Identities=14% Similarity=0.156 Sum_probs=135.6
Q ss_pred CCCEEEEeC-ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECC
Q psy4832 190 DGSLYVGDF-NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGS 268 (770)
Q Consensus 190 dG~lyv~d~-~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~ 268 (770)
+|.||++.. +.|.+++++|+.......... ....+++++ ++.||++.. ++.|+++ +++|........
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~---~~~~~~~~~-~g~l~vgt~-~~~l~~~-------d~~g~~~~~~~~ 174 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKA---IYATPIVSE-DGTIYVGSN-DNYLYAI-------NPDGTEKWRFKT 174 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEECSSC---CCSCCEECT-TSCEEEECT-TSEEEEE-------CTTSCEEEEEEC
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcCCCc---eeeeeEEcC-CCEEEEEcC-CCEEEEE-------CCCCCEeEEEec
Confidence 899999985 589999988877654432221 234557774 889999764 4688888 444554322211
Q ss_pred CccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCCeEEECCCCcEEEeecCCCCCCCcCCCccCCCccccc
Q psy4832 269 GERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPAST 348 (770)
Q Consensus 269 g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~ 348 (770)
. -.....+++|++|.||++. ..|.+++++|.........
T Consensus 175 ~---------------------~~~~~~~~~d~~g~l~v~t-~~l~~~d~~g~~~~~~~~~------------------- 213 (330)
T 3hxj_A 175 N---------------------DAITSAASIGKDGTIYFGS-DKVYAINPDGTEKWNFYAG------------------- 213 (330)
T ss_dssp S---------------------SCCCSCCEECTTCCEEEES-SSEEEECTTSCEEEEECCS-------------------
T ss_pred C---------------------CCceeeeEEcCCCEEEEEe-CEEEEECCCCcEEEEEccC-------------------
Confidence 0 0124467888899999999 6699999888654332211
Q ss_pred ccccCcceEEEeCCCCeEEEEe-CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCccccccccc
Q psy4832 349 AQLQWPTGLALSPLDDSLHFID-DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDL 427 (770)
Q Consensus 349 ~~l~~P~gla~d~~~g~lyv~D-~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 427 (770)
-.....+++++ +|.||++. ++.|++++++|........+.
T Consensus 214 --~~~~~~~~~~~-~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~------------------------------------ 254 (330)
T 3hxj_A 214 --YWTVTRPAISE-DGTIYVTSLDGHLYAINPDGTEKWRFKTGK------------------------------------ 254 (330)
T ss_dssp --SCCCSCCEECT-TSCEEEEETTTEEEEECTTSCEEEEEECSS------------------------------------
T ss_pred --CcceeceEECC-CCeEEEEcCCCeEEEECCCCCEeEEeeCCC------------------------------------
Confidence 12356788898 88999998 589999998886543321110
Q ss_pred CCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEE
Q psy4832 428 GSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALS 507 (770)
Q Consensus 428 ~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~gia 507 (770)
..+..++++++|.||++...+. +..++++|++....... -....+++
T Consensus 255 ~~~~~~~~~~~g~l~v~t~~gg----l~~~d~~g~~~~~~~~~-----------------------------~~~~~~~~ 301 (330)
T 3hxj_A 255 RIESSPVIGNTDTIYFGSYDGH----LYAINPDGTEKWNFETG-----------------------------SWIIATPV 301 (330)
T ss_dssp CCCSCCEECTTSCEEEECTTCE----EEEECTTSCEEEEEECS-----------------------------SCCCSCCE
T ss_pred CccccceEcCCCeEEEecCCCC----EEEECCCCcEEEEEEcC-----------------------------CccccceE
Confidence 0123466788999999987643 67788888754432111 01234578
Q ss_pred EcCCCcEEEEcCCC
Q psy4832 508 VSPDGVVNVADQGS 521 (770)
Q Consensus 508 v~~dG~lyvaD~~~ 521 (770)
++++|.||++....
T Consensus 302 ~d~~g~l~~gt~~G 315 (330)
T 3hxj_A 302 IDENGTIYFGTRNG 315 (330)
T ss_dssp ECTTCCEEEECTTS
T ss_pred EcCCCEEEEEcCCC
Confidence 88999999987543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.81 E-value=9.9e-07 Score=89.51 Aligned_cols=194 Identities=12% Similarity=0.083 Sum_probs=123.3
Q ss_pred eEEEEcCCCCEEEEeC--ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCC
Q psy4832 183 VALTSGPDGSLYVGDF--NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPS 259 (770)
Q Consensus 183 ~~la~~~dG~lyv~d~--~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~ 259 (770)
.+|.++ ++.||++.. ++|+++|+ +|++...+ ++.. ....|++++ ++.||++++.++++++++.. +
T Consensus 58 qGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~--~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~------T 125 (268)
T 3nok_A 58 QGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGN--IFAEGLASD--GERLYQLTWTEGLLFTWSGM------P 125 (268)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT--CCEEEEEEC--SSCEEEEESSSCEEEEEETT------T
T ss_pred ceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC--cceeEEEEe--CCEEEEEEccCCEEEEEECC------c
Confidence 688887 589999987 48999996 47776554 4321 223567776 78999999999999999632 2
Q ss_pred CcEE-EEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECCC-CcEEEeecCCCCCCCcC
Q psy4832 260 INWE-VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSPE-GIIHTLIGHHKHHNIWS 336 (770)
Q Consensus 260 g~~~-~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~~-G~i~t~~g~~~~~~~~~ 336 (770)
.... .+.-. ..+.|++.| .+.||++|..+ |+++|+. .++..-+..+..
T Consensus 126 l~~~~ti~~~-----------------------~eGwGLt~D-g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~----- 176 (268)
T 3nok_A 126 PQRERTTRYS-----------------------GEGWGLCYW-NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR----- 176 (268)
T ss_dssp TEEEEEEECS-----------------------SCCCCEEEE-TTEEEEECSSSEEEEECTTTCCEEEEEECEET-----
T ss_pred CcEEEEEeCC-----------------------CceeEEecC-CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC-----
Confidence 3322 22110 124577766 45799999766 9999976 455433322211
Q ss_pred CCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcC-CCcEEEEecCC-CCCCCCCCCCcccccccccccc
Q psy4832 337 PFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTN-DLKVKIVAGIP-LHCRTGDKDKRDFKDKQSKTKK 412 (770)
Q Consensus 337 p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~-~G~v~~vaG~~-~~~~~~~~~~~~~~~~~~~~~~ 412 (770)
...+..++.|.+. +|.||+.. .+.|.+||+ +|++....-.. .....
T Consensus 177 -----------g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~----------------- 226 (268)
T 3nok_A 177 -----------GQPVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAV----------------- 226 (268)
T ss_dssp -----------TEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHH-----------------
T ss_pred -----------CcccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccc-----------------
Confidence 1124567788877 88999987 689999996 68876444211 00000
Q ss_pred ccccCCcccccccccCCeeEEEEcCC-CCEEEEeCCCCceeeE
Q psy4832 413 STVQDDSVRASNMDLGSLTALAFSPT-GDLYIADIDARKVNAL 454 (770)
Q Consensus 413 ~~~~~~~~~a~~~~l~~P~giavd~~-G~lyVaD~~~~ri~~i 454 (770)
..........|+|||++|+ +.|||+.-.=-++..|
T Consensus 227 -------~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev 262 (268)
T 3nok_A 227 -------AGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEV 262 (268)
T ss_dssp -------TTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEE
T ss_pred -------cccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEE
Confidence 0000112356999999995 5699998654444444
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-06 Score=95.96 Aligned_cols=268 Identities=19% Similarity=0.202 Sum_probs=140.4
Q ss_pred eeecCCCeEEECCCc-cEEecccCCCeEEEEeccCcc--CCccC-C--CCCcccccccccCceEEEEcCC----CCEEEE
Q psy4832 127 HYNFHEGILQKGDGS-SLHLKHEFPRTVSVVMGTGLQ--RPLVC-K--DCDGVARDARLLTPVALTSGPD----GSLYVG 196 (770)
Q Consensus 127 ~~~~~~gil~~~dG~-~~~~~~~~~~~i~~v~g~G~~--~~~~~-~--~~~g~~~~~~l~~P~~la~~~d----G~lyv~ 196 (770)
-|+.|.+++..+||+ .+||++ .++.|..+..+|.. .++.- . ...+. .......+.+||++|+ |.|||+
T Consensus 12 gL~~P~~~a~~pdG~~rl~V~e-r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~-~~~~e~Gllgia~~P~f~~n~~lYv~ 89 (463)
T 2wg3_C 12 GLRQPVGALHSGDGSQRLFILE-KEGYVKILTPEGEIFKEPYLDIHKLVQSGI-KGGDERGLLSLAFHPNYKKNGKLYVS 89 (463)
T ss_dssp EESSEEEEECCSSSSCCEEEEE-TTTEEEEECTTSCBCSSCSEECTTTBCCCC-SSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred CCCCceEEEECCCCCeEEEEEe-CCceEEEEeCCCCeeeeeecCCcceeccCc-cccCCCcceeeEeCCCCcCCCEEEEE
Confidence 377888999999996 699998 88999988765542 11110 0 00000 0011345689999995 899997
Q ss_pred eC--------------ceEEEEcCC---------CcEEEEeccC-cccccceeEEEEeCCCCcEEEEeCC----------
Q psy4832 197 DF--------------NLVRRLTPE---------GNVFTVLQLS-ATQVSYQYYLALSPADGHLYISDAE---------- 242 (770)
Q Consensus 197 d~--------------~~I~~i~~~---------G~v~~~~~~~-~~~~~~p~~lav~p~~g~lyvsd~~---------- 242 (770)
-. ++|.|+..+ .+...++... ...-.+...|+|+| +|.|||+--.
T Consensus 90 yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~~~~~~~~~ 168 (463)
T 2wg3_C 90 YTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGMITLDDMEE 168 (463)
T ss_dssp EEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTTCCHHHHHH
T ss_pred EeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCCCCCCcccc
Confidence 43 377777532 1223444322 12234456899998 8999998433
Q ss_pred -------CcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCC---cccccccccCcceEEEccC-----C--cE
Q psy4832 243 -------KHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDN---GPALAAKLSHPKGLAIKAD-----K--TM 305 (770)
Q Consensus 243 -------~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~---g~~~~a~l~~P~gIavd~~-----G--~l 305 (770)
.++|+||+ ++|.- ..+....|.++.+.+.. ..-...-+.+|.||++|+. | .+
T Consensus 169 ~q~~~~~~GkIlRi~-------~dg~~----~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~ 237 (463)
T 2wg3_C 169 MDGLSDFTGSVLRLD-------VDTDM----CNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTI 237 (463)
T ss_dssp CTTCCSCTTEEEEEB-------CCCCC----SSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEE
T ss_pred ccCcCCCCeeEEEEE-------CCCCc----ccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEE
Confidence 24677773 34320 00111223222232221 1223345779999999986 5 46
Q ss_pred EEEeCCCeEEECCCCcEEEeecCCCCCCCcC-CCccCCCcccccccccCcceEEEeC------CCCeEEEEe-CCEEEEE
Q psy4832 306 FIADGTNIRVVSPEGIIHTLIGHHKHHNIWS-PFNCHRSFPASTAQLQWPTGLALSP------LDDSLHFID-DRVIFKL 377 (770)
Q Consensus 306 YvaD~~~Ir~id~~G~i~t~~g~~~~~~~~~-p~~~~~~~~~~~~~l~~P~gla~d~------~~g~lyv~D-~~~I~~i 377 (770)
|.+|..... . ....|..+......+ |. |... .....=..|.|++|-. ..|.++|+| .++|+++
T Consensus 238 ~~~D~~G~~-~-~~~ei~~i~~G~~yG--~~~P~~~-----~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~ 308 (463)
T 2wg3_C 238 LCSDSNGKN-R-SSARILQIIKGKDYE--SEPSLLE-----FKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTL 308 (463)
T ss_dssp EEECC--------CEEEEEEC----CC--SCCCCEE-----CCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEE
T ss_pred EecccCCCC-C-CCCeEeeeccCCCCC--CCCCeEE-----eeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEE
Confidence 778851100 0 001222221100000 11 1100 0000003578888852 245689998 5678777
Q ss_pred cCCCc-----EEEE-ecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeC
Q psy4832 378 TNDLK-----VKIV-AGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADI 446 (770)
Q Consensus 378 ~~~G~-----v~~v-aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~ 446 (770)
..+.. ...+ .|.+..+ .......|.+|+++|+|.|||+|.
T Consensus 309 ~~~~~~~~~~~~~~~~g~~~~~-----------------------------~~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 309 QQSPVTKQWQEKPLCLGTSGSC-----------------------------RGYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp EC-----CCEEEEECEEETTSS-----------------------------CSCCCSEEEEEEECTTCCEEEEEE
T ss_pred EeCCCCceeeEEEeecCCcccc-----------------------------cccccCcceEEEECCCCCEEEEec
Confidence 64321 1111 1211110 011235699999999999999997
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.74 E-value=2.8e-06 Score=91.81 Aligned_cols=108 Identities=14% Similarity=0.078 Sum_probs=72.5
Q ss_pred eEEECCCccEEecccC----CCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCC-EEEEeC----------
Q psy4832 134 ILQKGDGSSLHLKHEF----PRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGS-LYVGDF---------- 198 (770)
Q Consensus 134 il~~~dG~~~~~~~~~----~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~-lyv~d~---------- 198 (770)
++..+||..+|+++.. .+.|.++...-.. .+ ..-.-=..|. |+++|||. |||++.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~-v~--------~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~ 107 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR-VI--------GMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGER 107 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE-EE--------EEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCe-EE--------EEEECCCCCc-EEECCCCCEEEEEcccccccccCCC
Confidence 5667889999999843 4678887653211 11 0000013475 99999986 999872
Q ss_pred -ceEEEEcCC-CcEEEEeccCcc----cccceeEEEEeCCCCcEEEEeCC-CcEEEEEec
Q psy4832 199 -NLVRRLTPE-GNVFTVLQLSAT----QVSYQYYLALSPADGHLYISDAE-KHQILRVLS 251 (770)
Q Consensus 199 -~~I~~i~~~-G~v~~~~~~~~~----~~~~p~~lav~p~~g~lyvsd~~-~~~I~~i~~ 251 (770)
+.|.+||.. +++...+..+.. .-..|.+++++|.+..|||++.. .+.|..|+.
T Consensus 108 ~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~ 167 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL 167 (386)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEET
T ss_pred CCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEEC
Confidence 569999965 666654433221 13479999999977789999874 688999963
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3e-05 Score=88.56 Aligned_cols=193 Identities=9% Similarity=0.020 Sum_probs=115.4
Q ss_pred ECCCccEEecccCCCeEEEEecc-CccCCccCCCCCcccccccccCceEEEEcCCCC-EEEEeC-ceEEEEcC---CCcE
Q psy4832 137 KGDGSSLHLKHEFPRTVSVVMGT-GLQRPLVCKDCDGVARDARLLTPVALTSGPDGS-LYVGDF-NLVRRLTP---EGNV 210 (770)
Q Consensus 137 ~~dG~~~~~~~~~~~~i~~v~g~-G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~-lyv~d~-~~I~~i~~---~G~v 210 (770)
..+| .+|++....+.|.++.+. |... ..- .... .|.+++++|||. ||+++. +.|+.++. ++++
T Consensus 146 ~p~~-~~~vs~~~d~~V~v~D~~t~~~~--------~~i-~~g~-~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~ 214 (543)
T 1nir_A 146 DLPN-LFSVTLRDAGQIALVDGDSKKIV--------KVI-DTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK 214 (543)
T ss_dssp CGGG-EEEEEEGGGTEEEEEETTTCCEE--------EEE-ECST-TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred CCCC-EEEEEEcCCCeEEEEECCCceEE--------EEE-ecCc-ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcE
Confidence 3455 466666566777777643 2110 000 0011 289999999986 788776 68999987 4665
Q ss_pred EEEeccCcccccceeEEEEeC----CCCcEEEEeCCCcEEEEEeccCCccCCCCcE-EEEECCCccccCCCCCCcCCCcc
Q psy4832 211 FTVLQLSATQVSYQYYLALSP----ADGHLYISDAEKHQILRVLSLESVADPSINW-EVAVGSGERCIPGDETNCGDNGP 285 (770)
Q Consensus 211 ~~~~~~~~~~~~~p~~lav~p----~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~-~~vaG~g~~~~p~~~~~~g~~g~ 285 (770)
...+.. -..|.+++++| .+..||+++...+.|..++. .++.. .++...+.. .++.
T Consensus 215 ~~~i~~----g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~------~t~~~~~~i~~~g~~---------~~~~- 274 (543)
T 1nir_A 215 VAEIKI----GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG------ETLEPKQIVSTRGMT---------VDTQ- 274 (543)
T ss_dssp EEEEEC----CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET------TTCCEEEEEECCEEC---------SSSC-
T ss_pred EEEEec----CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEec------cccccceeecccCcc---------cCcc-
Confidence 544432 24699999998 78889999987788888853 23332 233221110 0000
Q ss_pred cccccccCcceEEEccCCc-EEEEeCCC--eEEECCCC-c-EE-EeecCCCCCCCcCCCccCCCcccccccccCcceEEE
Q psy4832 286 ALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVSPEG-I-IH-TLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLAL 359 (770)
Q Consensus 286 ~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id~~G-~-i~-t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~ 359 (770)
. -..-..+.+|++++++. +|++.... |..+|... . +. +.+.. -.+|.++++
T Consensus 275 ~-~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~----------------------~~~~~~~~~ 331 (543)
T 1nir_A 275 T-YHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA----------------------APFLHDGGW 331 (543)
T ss_dssp C-EESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC----------------------CSSCCCEEE
T ss_pred c-cccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc----------------------CcCccCceE
Confidence 0 00011467899988655 66665433 77777432 1 11 11111 126889999
Q ss_pred eCCCCe-EEEEe--CCEEEEEcC-CCcEE
Q psy4832 360 SPLDDS-LHFID--DRVIFKLTN-DLKVK 384 (770)
Q Consensus 360 d~~~g~-lyv~D--~~~I~~i~~-~G~v~ 384 (770)
+| +|+ ||++. ++.|..++. +|++.
T Consensus 332 sp-dg~~l~va~~~~~~v~v~D~~tg~l~ 359 (543)
T 1nir_A 332 DS-SHRYFMTAANNSNKVAVIDSKDRRLS 359 (543)
T ss_dssp CT-TSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred CC-CCCEEEEEecCCCeEEEEECCCCeEE
Confidence 99 776 78886 478999994 56654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=5.2e-06 Score=87.87 Aligned_cols=159 Identities=11% Similarity=0.056 Sum_probs=96.5
Q ss_pred eEEEEcCCCCEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCC
Q psy4832 183 VALTSGPDGSLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPS 259 (770)
Q Consensus 183 ~~la~~~dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~ 259 (770)
.++++.+++.+|++.. +.|++++.+ |++...+..+ ....|.+++++|.+..+|++...++.|+.++. .+
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~------~t 74 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP--DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL------DT 74 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS--SCCSSCEEEECTTSSEEEEEETTTTEEEEEET------TT
T ss_pred ccccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecC--CCCCCceeEECCCCCEEEEEeCCCCcEEEEeC------CC
Confidence 4566777888998875 589999864 6666555322 12258899999855569999988899999953 23
Q ss_pred CcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeC-------------CCeEEECCC-CcEEE
Q psy4832 260 INWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADG-------------TNIRVVSPE-GIIHT 324 (770)
Q Consensus 260 g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~-------------~~Ir~id~~-G~i~t 324 (770)
+........+.. . ...-..|.+++++++|. ||++.. ..|+.+|.. +.+..
T Consensus 75 ~~~~~~~~~~~~-----------~----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 139 (349)
T 1jmx_B 75 CKNTFHANLSSV-----------P----GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK 139 (349)
T ss_dssp TEEEEEEESCCS-----------T----TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred CcEEEEEEcccc-----------c----ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccc
Confidence 433322211000 0 00123588999999986 788763 236666643 21110
Q ss_pred eecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeCCEEEEEcC-CCcEEE
Q psy4832 325 LIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFKLTN-DLKVKI 385 (770)
Q Consensus 325 ~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~~~I~~i~~-~G~v~~ 385 (770)
..... ..-..+.+++++| +|+||+++. .|+.++. ++++..
T Consensus 140 ~~~~~-------------------~~~~~~~~~~~s~-dg~l~~~~~-~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 140 PVRTF-------------------PMPRQVYLMRAAD-DGSLYVAGP-DIYKMDVKTGKYTV 180 (349)
T ss_dssp CSEEE-------------------ECCSSCCCEEECT-TSCEEEESS-SEEEECTTTCCEEE
T ss_pred eeeec-------------------cCCCcccceeECC-CCcEEEccC-cEEEEeCCCCceec
Confidence 00000 0011477899999 888888754 4899985 566543
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.68 E-value=0.0015 Score=75.40 Aligned_cols=232 Identities=15% Similarity=0.118 Sum_probs=125.0
Q ss_pred CceEEEEcCCCCEEE-EeCceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC
Q psy4832 181 TPVALTSGPDGSLYV-GDFNLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP 258 (770)
Q Consensus 181 ~P~~la~~~dG~lyv-~d~~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~ 258 (770)
.|..++++|||...+ +..+.|+..+. +++....+. ..-.....++++| +|.+.++-...+.|+..+... .
T Consensus 20 ~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~---~h~~~v~~~~~sp-dg~~lasg~~d~~v~lWd~~~----~ 91 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYT---EHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQ----T 91 (611)
T ss_dssp CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEEC---CCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSS----T
T ss_pred ceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEec---CCCCceEEEEECC-CCcEEEEEeCCCCEEEeECCC----C
Confidence 567789999997555 44467777765 355555442 1223467899998 787777776677777774211 1
Q ss_pred CCcEE-EEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeC-C-----CeEEECCCCcEEEeecCCCC
Q psy4832 259 SINWE-VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADG-T-----NIRVVSPEGIIHTLIGHHKH 331 (770)
Q Consensus 259 ~g~~~-~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~-~-----~Ir~id~~G~i~t~~g~~~~ 331 (770)
..... .+.+. -..-..|+++++|...++-+ . .|+..+....+.++.|
T Consensus 92 ~~~~~~~~~~~----------------------~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~g---- 145 (611)
T 1nr0_A 92 THILKTTIPVF----------------------SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG---- 145 (611)
T ss_dssp TCCEEEEEECS----------------------SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCC----
T ss_pred cceeeEeeccc----------------------CCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecC----
Confidence 11111 11110 01245899999988655422 1 1444442211111111
Q ss_pred CCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe--CCEEEEEc-CCCcEE-EEecCCCCCCCCCCCCcccccc
Q psy4832 332 HNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID--DRVIFKLT-NDLKVK-IVAGIPLHCRTGDKDKRDFKDK 406 (770)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D--~~~I~~i~-~~G~v~-~vaG~~~~~~~~~~~~~~~~~~ 406 (770)
.-.....++++| ++. ++++- .+.|+..+ ..++.. ++.| +
T Consensus 146 ------------------h~~~v~~v~f~p-~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~---H-------------- 189 (611)
T 1nr0_A 146 ------------------QARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGE---H-------------- 189 (611)
T ss_dssp ------------------CSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECC---C--------------
T ss_pred ------------------CCCCceEEEECC-CCCeEEEEEeCCCeEEEEECCCCeEeeeecc---c--------------
Confidence 122457899999 664 34433 45666665 233322 2211 1
Q ss_pred ccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEc-CCCcEEEeecCccCCCCCcCCCCCccc
Q psy4832 407 QSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVID-STGRMFDFAGRWQSDKKNCNTTNCAEF 485 (770)
Q Consensus 407 ~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~-~~G~i~~~aG~~~~~~~~~~~~~~~~~ 485 (770)
-....+++++|+|.++++-...+. |+..+ .+|+.........
T Consensus 190 --------------------~~~V~~v~fspdg~~las~s~D~~---i~lwd~~~g~~~~~~~~~~-------------- 232 (611)
T 1nr0_A 190 --------------------TKFVHSVRYNPDGSLFASTGGDGT---IVLYNGVDGTKTGVFEDDS-------------- 232 (611)
T ss_dssp --------------------SSCEEEEEECTTSSEEEEEETTSC---EEEEETTTCCEEEECBCTT--------------
T ss_pred --------------------cCceEEEEECCCCCEEEEEECCCc---EEEEECCCCcEeeeecccc--------------
Confidence 123689999999998887666554 55555 3454332221000
Q ss_pred ccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEee
Q psy4832 486 EKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILAL 527 (770)
Q Consensus 486 ~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i 527 (770)
....+.-....+|+++|+|.++++-...+.|+..
T Consensus 233 --------~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lW 266 (611)
T 1nr0_A 233 --------LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 266 (611)
T ss_dssp --------SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred --------ccccccCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 0000111346789999998877765444444443
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.3e-06 Score=85.63 Aligned_cols=200 Identities=14% Similarity=0.079 Sum_probs=122.5
Q ss_pred ceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccC
Q psy4832 223 YQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKAD 302 (770)
Q Consensus 223 ~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~ 302 (770)
.-.||.++ ++.||++....++|++++.. +|.+..-. .+. -.+..||+++ .
T Consensus 56 ftqGL~~~--~~~Ly~stG~~g~v~~iD~~------Tgkv~~~~-l~~--------------------~~FgeGit~~-g 105 (268)
T 3nok_A 56 FTQGLVFH--QGHFFESTGHQGTLRQLSLE------SAQPVWME-RLG--------------------NIFAEGLASD-G 105 (268)
T ss_dssp CEEEEEEE--TTEEEEEETTTTEEEECCSS------CSSCSEEE-ECT--------------------TCCEEEEEEC-S
T ss_pred ccceEEEE--CCEEEEEcCCCCEEEEEECC------CCcEEeEE-CCC--------------------CcceeEEEEe-C
Confidence 34799998 68999999999999998532 23321111 110 0134578887 4
Q ss_pred CcEEEEeCCC--eEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe-CCEEEEEc
Q psy4832 303 KTMFIADGTN--IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID-DRVIFKLT 378 (770)
Q Consensus 303 G~lYvaD~~~--Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D-~~~I~~i~ 378 (770)
+.||++.+.. +.++|++ +++..-+... ..+.||+.| ++.||++| +++|..+|
T Consensus 106 ~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~----------------------~eGwGLt~D--g~~L~vSdGs~~l~~iD 161 (268)
T 3nok_A 106 ERLYQLTWTEGLLFTWSGMPPQRERTTRYS----------------------GEGWGLCYW--NGKLVRSDGGTMLTFHE 161 (268)
T ss_dssp SCEEEEESSSCEEEEEETTTTEEEEEEECS----------------------SCCCCEEEE--TTEEEEECSSSEEEEEC
T ss_pred CEEEEEEccCCEEEEEECCcCcEEEEEeCC----------------------CceeEEecC--CCEEEEECCCCEEEEEc
Confidence 6899998665 9999964 5444333221 124578877 67899999 78999999
Q ss_pred CC-CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEE
Q psy4832 379 ND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVI 457 (770)
Q Consensus 379 ~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i 457 (770)
+. .++..-.-..... ..+..++.|... +|.||++.+..+ .|.+|
T Consensus 162 p~T~~v~~~I~V~~~g-------------------------------~~v~~lNeLe~~-dG~lyanvw~s~---~I~vI 206 (268)
T 3nok_A 162 PDGFALVGAVQVKLRG-------------------------------QPVELINELECA-NGVIYANIWHSS---DVLEI 206 (268)
T ss_dssp TTTCCEEEEEECEETT-------------------------------EECCCEEEEEEE-TTEEEEEETTCS---EEEEE
T ss_pred CCCCeEEEEEEeCCCC-------------------------------cccccccccEEe-CCEEEEEECCCC---eEEEE
Confidence 65 4443222111000 123456778776 889999998876 47888
Q ss_pred cC-CCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCC-CcEEEEcCCCceEEee
Q psy4832 458 DS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPD-GVVNVADQGSLHILAL 527 (770)
Q Consensus 458 ~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~d-G~lyvaD~~~~~I~~i 527 (770)
|+ +|++....-... +... .. ........-|.|||.+|+ +.|||+...=.+++.|
T Consensus 207 Dp~TG~V~~~Idl~~------------L~~~--~~--~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev 262 (268)
T 3nok_A 207 DPATGTVVGVIDASA------------LTRA--VA--GQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEV 262 (268)
T ss_dssp CTTTCBEEEEEECHH------------HHHH--HT--TTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEE
T ss_pred eCCCCcEEEEEECCC------------Cccc--cc--ccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEE
Confidence 97 888765432110 0000 00 000112346899999995 4789987554455444
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=5.6e-06 Score=87.06 Aligned_cols=117 Identities=20% Similarity=0.270 Sum_probs=75.9
Q ss_pred CceEEEEcCCCC-EEEEeC--ceEEEEcC-CCcEEEEeccCcc--cccceeEEEEeCCCCcEEEEeC-----------CC
Q psy4832 181 TPVALTSGPDGS-LYVGDF--NLVRRLTP-EGNVFTVLQLSAT--QVSYQYYLALSPADGHLYISDA-----------EK 243 (770)
Q Consensus 181 ~P~~la~~~dG~-lyv~d~--~~I~~i~~-~G~v~~~~~~~~~--~~~~p~~lav~p~~g~lyvsd~-----------~~ 243 (770)
.|.+++++|+|. +|++.. +.|..++. +|+....+..+.. .-..|.+++++|.+..||+++. .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 488899999995 788876 48999985 4776655432110 1125789999985558999862 24
Q ss_pred cEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCCeEEECCC-Cc
Q psy4832 244 HQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTNIRVVSPE-GI 321 (770)
Q Consensus 244 ~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~Ir~id~~-G~ 321 (770)
+.|+.++. .++........+ ..|.+++++++|. ||+++ ..|+.+|.. +.
T Consensus 115 ~~i~v~d~------~~~~~~~~~~~~----------------------~~~~~~~~s~dg~~l~~~~-~~i~~~d~~~~~ 165 (337)
T 1pby_B 115 TRVALYDA------ETLSRRKAFEAP----------------------RQITMLAWARDGSKLYGLG-RDLHVMDPEAGT 165 (337)
T ss_dssp CEEEEEET------TTTEEEEEEECC----------------------SSCCCEEECTTSSCEEEES-SSEEEEETTTTE
T ss_pred ceEEEEEC------CCCcEEEEEeCC----------------------CCcceeEECCCCCEEEEeC-CeEEEEECCCCc
Confidence 77888853 122222211111 1478999999987 88883 458888864 55
Q ss_pred EEEee
Q psy4832 322 IHTLI 326 (770)
Q Consensus 322 i~t~~ 326 (770)
+...+
T Consensus 166 ~~~~~ 170 (337)
T 1pby_B 166 LVEDK 170 (337)
T ss_dssp EEEEE
T ss_pred Eeeee
Confidence 54433
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.65 E-value=8.7e-06 Score=89.47 Aligned_cols=104 Identities=19% Similarity=0.190 Sum_probs=69.0
Q ss_pred CCCccEEecccCC----CeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCC-EEEEeC-----------ceE
Q psy4832 138 GDGSSLHLKHEFP----RTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGS-LYVGDF-----------NLV 201 (770)
Q Consensus 138 ~dG~~~~~~~~~~----~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~-lyv~d~-----------~~I 201 (770)
.++..+|+++... +.|+++...-... +. . ... =..| +|+++|||. |||++. +.|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~v-v~------~-I~v-G~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRI-LG------M-TDG-GFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEE-EE------E-EEE-CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEE-EE------E-EEC-CCCC-ceEECCCCCEEEEEeccccccccCCCCCEE
Confidence 5777788887332 5777776432111 00 0 000 1358 999999985 999973 479
Q ss_pred EEEcCC-CcEEEEeccC-ccc---ccceeEEEEeCCCCcEEEEeCC-CcEEEEEec
Q psy4832 202 RRLTPE-GNVFTVLQLS-ATQ---VSYQYYLALSPADGHLYISDAE-KHQILRVLS 251 (770)
Q Consensus 202 ~~i~~~-G~v~~~~~~~-~~~---~~~p~~lav~p~~g~lyvsd~~-~~~I~~i~~ 251 (770)
.+||.. +++...+..+ ... ...|.+++++|.+..|||++.. .+.|..|+.
T Consensus 152 sviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~ 207 (426)
T 3c75_H 152 EVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDL 207 (426)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEET
T ss_pred EEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEEC
Confidence 999964 6766554332 111 2579999999977799999875 788999963
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.64 E-value=8.5e-06 Score=82.65 Aligned_cols=201 Identities=14% Similarity=0.095 Sum_probs=122.2
Q ss_pred cceeEEEEeCCCCcEEEEeCCC--cEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEE
Q psy4832 222 SYQYYLALSPADGHLYISDAEK--HQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI 299 (770)
Q Consensus 222 ~~p~~lav~p~~g~lyvsd~~~--~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIav 299 (770)
..-.||.++ ++.||++.... .+|++++. .+|.+..-...+. -.+..||++
T Consensus 43 ~ftqGL~~~--~~~LyestG~~g~S~v~~vD~------~Tgkv~~~~~l~~--------------------~~FgeGit~ 94 (262)
T 3nol_A 43 AFTEGFFYR--NGYFYESTGLNGRSSIRKVDI------ESGKTLQQIELGK--------------------RYFGEGISD 94 (262)
T ss_dssp CEEEEEEEE--TTEEEEEEEETTEEEEEEECT------TTCCEEEEEECCT--------------------TCCEEEEEE
T ss_pred cccceEEEE--CCEEEEECCCCCCceEEEEEC------CCCcEEEEEecCC--------------------ccceeEEEE
Confidence 344899998 68999998653 58999953 2455433221110 013457888
Q ss_pred ccCCcEEEEeCCC--eEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe-CCEEE
Q psy4832 300 KADKTMFIADGTN--IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID-DRVIF 375 (770)
Q Consensus 300 d~~G~lYvaD~~~--Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D-~~~I~ 375 (770)
+ .+.||++.+.. +.++|++ +++..-+..+. .+.||+.| ++.||++| +++|+
T Consensus 95 ~-g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~----------------------eG~glt~d--g~~L~~SdGs~~i~ 149 (262)
T 3nol_A 95 W-KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG----------------------EGWGLTHN--DQYLIMSDGTPVLR 149 (262)
T ss_dssp E-TTEEEEEESSSSEEEEEETTTCCEEEEEECSS----------------------CCCCEEEC--SSCEEECCSSSEEE
T ss_pred e-CCEEEEEEeeCCEEEEEECccCcEEEEEECCC----------------------CceEEecC--CCEEEEECCCCeEE
Confidence 7 56899998755 8899964 54433332211 24567755 67899999 78999
Q ss_pred EEcCC-CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeE
Q psy4832 376 KLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNAL 454 (770)
Q Consensus 376 ~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i 454 (770)
.+|+. .++..-.-.... ...+..++.+.+. +|.||++.+..+. |
T Consensus 150 ~iDp~T~~v~~~I~V~~~-------------------------------g~~~~~lNELe~~-~G~lyan~w~~~~---I 194 (262)
T 3nol_A 150 FLDPESLTPVRTITVTAH-------------------------------GEELPELNELEWV-DGEIFANVWQTNK---I 194 (262)
T ss_dssp EECTTTCSEEEEEECEET-------------------------------TEECCCEEEEEEE-TTEEEEEETTSSE---E
T ss_pred EEcCCCCeEEEEEEeccC-------------------------------CccccccceeEEE-CCEEEEEEccCCe---E
Confidence 99976 454322211000 0123456677765 7899999998764 7
Q ss_pred EEEcC-CCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCC-cEEEEcCCCceEEee
Q psy4832 455 RVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDG-VVNVADQGSLHILAL 527 (770)
Q Consensus 455 ~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG-~lyvaD~~~~~I~~i 527 (770)
.+||+ +|++........ +... .. ........|.|||.+|++ .|||+...=.++++|
T Consensus 195 ~vIDp~tG~V~~~Id~~~------------L~~~--~~---~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev 252 (262)
T 3nol_A 195 VRIDPETGKVTGIIDLNG------------ILAE--AG---PLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEI 252 (262)
T ss_dssp EEECTTTCBEEEEEECTT------------GGGG--SC---SCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred EEEECCCCcEEEEEECCc------------Cccc--cc---cccCcCCceEEEEEcCCCCEEEEECCCCCceEEE
Confidence 88897 888765542210 0000 00 011124569999999964 788887655555554
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.2e-06 Score=88.80 Aligned_cols=243 Identities=13% Similarity=0.098 Sum_probs=140.2
Q ss_pred EECCCccEEeccc-CCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCCEEEEeC---------------c
Q psy4832 136 QKGDGSSLHLKHE-FPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDF---------------N 199 (770)
Q Consensus 136 ~~~dG~~~~~~~~-~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~---------------~ 199 (770)
...+|..+|++.. ....|.++.-+|......+ + ..+..|.++ ++.||.+.. +
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~---~--------~~~~~i~~~-g~~Iyy~~~~~~~~~~~~~~~~n~~ 88 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLS---N--------DTAMYINAD-KNYVYYVRNNNQKITSQTFFSYDRN 88 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEE---E--------EEEEEEEEC-SSEEEEEEECC------CCSSCCSE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEcc---C--------CceeeEEEc-CCEEEEEECCCCcccccceeccCCC
Confidence 3346667777752 2456777765554321100 0 123455543 455777653 3
Q ss_pred eEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEe---CCCcEEEEEeccCCccCCCCc-EEEEECCCccccCC
Q psy4832 200 LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISD---AEKHQILRVLSLESVADPSIN-WEVAVGSGERCIPG 275 (770)
Q Consensus 200 ~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd---~~~~~I~~i~~~~~~~~~~g~-~~~vaG~g~~~~p~ 275 (770)
.|++++.+|...+.+.. . .+.++++.++.||+++ ..+..|++++. +|. .+.+....
T Consensus 89 ~Iy~i~~dg~~~~~l~~---~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~-------dGs~~~~lt~~~------ 148 (302)
T 3s25_A 89 SLCRIKRNGHGSTVLDP---D----PCIYASLIGNYIYYLHYDTQTATSLYRIRI-------DGEEKKKIKNHY------ 148 (302)
T ss_dssp EEEEEETTSCCCEEEEC---S----CEEEEEEETTEEEEEEESSSSCEEEEEEET-------TSCCCEEEESSC------
T ss_pred eEEEEeCCCCcceEeec---C----CccEEEEeCCEEEEEeecCCCCceEEEEEC-------CCCCeEEEeCCC------
Confidence 79999999876555421 1 1234555589999999 67889999953 332 22332110
Q ss_pred CCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCccCCCccccccccc
Q psy4832 276 DETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQ 352 (770)
Q Consensus 276 ~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~ 352 (770)
. +++++ .+.||+++.+. |.+++.+|.-.+.+..+
T Consensus 149 ---------------~-----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~----------------------- 185 (302)
T 3s25_A 149 ---------------L-----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC----------------------- 185 (302)
T ss_dssp ---------------C-----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS-----------------------
T ss_pred ---------------c-----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC-----------------------
Confidence 0 12334 45699998744 99999887544433221
Q ss_pred CcceEEEeCCCCeEEEEe---CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCC
Q psy4832 353 WPTGLALSPLDDSLHFID---DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGS 429 (770)
Q Consensus 353 ~P~gla~d~~~g~lyv~D---~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 429 (770)
+..+++.|..+.||+++ ..+|.+++.+|.-..+.-. ..+
T Consensus 186 -~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~-----------------------------------~~~-- 227 (302)
T 3s25_A 186 -NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTE-----------------------------------ANI-- 227 (302)
T ss_dssp -CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSC-----------------------------------SCE--
T ss_pred -CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeC-----------------------------------CCc--
Confidence 11234556578899998 3589999988753333310 011
Q ss_pred eeEEEEcCCC-CEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEE
Q psy4832 430 LTALAFSPTG-DLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSV 508 (770)
Q Consensus 430 P~giavd~~G-~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav 508 (770)
|. ++++| .||+++.... ..|.+++.+|.-....-.. ...+|++
T Consensus 228 ~~---~~~~g~~Iy~~~~~~~--~~i~~~~~DG~~r~~l~~~-------------------------------~~~~i~i 271 (302)
T 3s25_A 228 EH---YNVYGSLIFYQRGGDN--PALCVVKNDGTGFKELAKG-------------------------------EFCNINV 271 (302)
T ss_dssp EE---EEEETTEEEEEECSSS--CEEEEEETTSCCCEEEEES-------------------------------CEEEEEE
T ss_pred ce---EEECCCEEEEEECCCC--cEEEEEECCCCccEEeeCC-------------------------------ccceEEE
Confidence 22 55555 4998743322 3578888888632221000 1225666
Q ss_pred cCCCcEEEEcCCCceEEeee
Q psy4832 509 SPDGVVNVADQGSLHILALQ 528 (770)
Q Consensus 509 ~~dG~lyvaD~~~~~I~~i~ 528 (770)
. .+.||++|.....|.++.
T Consensus 272 ~-~d~Iy~td~~~~~i~~~~ 290 (302)
T 3s25_A 272 T-SQYVYFTDFVSNKEYCTS 290 (302)
T ss_dssp C-SSEEEEEETTTCCEEEEE
T ss_pred e-CCEEEEEECCCCeEEEEE
Confidence 4 458999998887787764
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.8e-05 Score=83.04 Aligned_cols=139 Identities=14% Similarity=0.079 Sum_probs=84.9
Q ss_pred ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCC
Q psy4832 199 NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDE 277 (770)
Q Consensus 199 ~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~ 277 (770)
+.|+.++.. +++...+..+. ....|.+++++|.+..||++....+.|+.++. .++........+..
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~------~~~~~~~~~~~~~~------ 77 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIAD-AGPTPMVPMVAPGGRIAYATVNKSESLVKIDL------VTGETLGRIDLSTP------ 77 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTT-CTTCCCCEEECTTSSEEEEEETTTTEEEEEET------TTCCEEEEEECCBT------
T ss_pred CeEEEEECCCCcEEEEEEcCC-CCCCccceEEcCCCCEEEEEeCCCCeEEEEEC------CCCCeEeeEEcCCc------
Confidence 466677653 55555443211 00148999999855589999998899999953 23443322211100
Q ss_pred CCcCCCcccccccccCcceEEEccCC-cEEEEe-------------CCCeEEECCC-CcEEEeecCCCCCCCcCCCccCC
Q psy4832 278 TNCGDNGPALAAKLSHPKGLAIKADK-TMFIAD-------------GTNIRVVSPE-GIIHTLIGHHKHHNIWSPFNCHR 342 (770)
Q Consensus 278 ~~~g~~g~~~~a~l~~P~gIavd~~G-~lYvaD-------------~~~Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~ 342 (770)
+ ..-..|.+++++++| .||+++ ...|++++.+ +.+...+..+
T Consensus 78 -----~-----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~------------- 134 (337)
T 1pby_B 78 -----E-----ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP------------- 134 (337)
T ss_dssp -----T-----EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-------------
T ss_pred -----c-----cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-------------
Confidence 0 011258899999998 588885 2338888865 4443322211
Q ss_pred CcccccccccCcceEEEeCCCCe-EEEEeCCEEEEEcC-CCcEE
Q psy4832 343 SFPASTAQLQWPTGLALSPLDDS-LHFIDDRVIFKLTN-DLKVK 384 (770)
Q Consensus 343 ~~~~~~~~l~~P~gla~d~~~g~-lyv~D~~~I~~i~~-~G~v~ 384 (770)
..|.+++++| +|+ ||++ ++.|+.++. ++++.
T Consensus 135 ---------~~~~~~~~s~-dg~~l~~~-~~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 135 ---------RQITMLAWAR-DGSKLYGL-GRDLHVMDPEAGTLV 167 (337)
T ss_dssp ---------SSCCCEEECT-TSSCEEEE-SSSEEEEETTTTEEE
T ss_pred ---------CCcceeEECC-CCCEEEEe-CCeEEEEECCCCcEe
Confidence 1478899999 765 8888 577888885 45544
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.57 E-value=5.3e-05 Score=76.14 Aligned_cols=205 Identities=15% Similarity=0.099 Sum_probs=124.2
Q ss_pred cccceeEEEEeCCCCcEEEEeCC--CcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceE
Q psy4832 220 QVSYQYYLALSPADGHLYISDAE--KHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGL 297 (770)
Q Consensus 220 ~~~~p~~lav~p~~g~lyvsd~~--~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gI 297 (770)
.-..-.||+++ ++.||++... ...|++++. .+|.+..-...+. -.+..||
T Consensus 19 ~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~------~tgkv~~~~~l~~--------------------~~fgeGi 70 (243)
T 3mbr_X 19 TTAFTEGLFYL--RGHLYESTGETGRSSVRKVDL------ETGRILQRAEVPP--------------------PYFGAGI 70 (243)
T ss_dssp TTCCEEEEEEE--TTEEEEEECCTTSCEEEEEET------TTCCEEEEEECCT--------------------TCCEEEE
T ss_pred CccccccEEEE--CCEEEEECCCCCCceEEEEEC------CCCCEEEEEeCCC--------------------CcceeEE
Confidence 34456799999 4899999765 468999963 3455443221111 1134678
Q ss_pred EEccCCcEEEEeCCC--eEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe-CCE
Q psy4832 298 AIKADKTMFIADGTN--IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID-DRV 373 (770)
Q Consensus 298 avd~~G~lYvaD~~~--Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D-~~~ 373 (770)
+++ ++.||++.+.+ +.++|++ .++..-+..+. .+.||+.+ ++.||++| +++
T Consensus 71 ~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~----------------------~Gwglt~d--g~~L~vSdgs~~ 125 (243)
T 3mbr_X 71 VAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYPG----------------------EGWALTSD--DSHLYMSDGTAV 125 (243)
T ss_dssp EEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECSS----------------------CCCEEEEC--SSCEEEECSSSE
T ss_pred EEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC----------------------CceEEeeC--CCEEEEECCCCe
Confidence 887 57899998765 9999964 44433232211 34577755 67899999 689
Q ss_pred EEEEcCC-CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCcee
Q psy4832 374 IFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVN 452 (770)
Q Consensus 374 I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~ 452 (770)
|+.+|+. .++..-.-..... ..+..++.|... +|.||++.+..+.
T Consensus 126 l~~iDp~t~~~~~~I~V~~~g-------------------------------~~~~~lNeLe~~-~G~lyanvw~s~~-- 171 (243)
T 3mbr_X 126 IRKLDPDTLQQVGSIKVTAGG-------------------------------RPLDNLNELEWV-NGELLANVWLTSR-- 171 (243)
T ss_dssp EEEECTTTCCEEEEEECEETT-------------------------------EECCCEEEEEEE-TTEEEEEETTTTE--
T ss_pred EEEEeCCCCeEEEEEEEccCC-------------------------------cccccceeeEEe-CCEEEEEECCCCe--
Confidence 9999975 4433222111000 113445667654 7899999988764
Q ss_pred eEEEEcC-CCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCC-CcEEEEcCCCceEEeee
Q psy4832 453 ALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPD-GVVNVADQGSLHILALQ 528 (770)
Q Consensus 453 ~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~d-G~lyvaD~~~~~I~~i~ 528 (770)
|.+||+ +|++....-... +... ... .......-|.|||.+|+ +.|||+...=.+++.|.
T Consensus 172 -I~vIDp~tG~V~~~idl~~------------l~~~--~~~--~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~ 232 (243)
T 3mbr_X 172 -IARIDPASGKVVAWIDLQA------------LVPD--ADA--LTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIR 232 (243)
T ss_dssp -EEEECTTTCBEEEEEECGG------------GSTT--TTS--CCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred -EEEEECCCCCEEEEEECCc------------Cccc--ccc--ccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEE
Confidence 788897 888765442210 0000 000 00112356999999995 47899876555665553
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.55 E-value=7.7e-05 Score=80.82 Aligned_cols=105 Identities=15% Similarity=0.141 Sum_probs=66.1
Q ss_pred EEECCCccEEeccc-CCC---eEEEEecc-CccCCccCCCCCcccccccccCceEEEEcCCCC-EEEEeC----------
Q psy4832 135 LQKGDGSSLHLKHE-FPR---TVSVVMGT-GLQRPLVCKDCDGVARDARLLTPVALTSGPDGS-LYVGDF---------- 198 (770)
Q Consensus 135 l~~~dG~~~~~~~~-~~~---~i~~v~g~-G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~-lyv~d~---------- 198 (770)
+...|+..+|+.+. ... .|.++... ++.. . ..... ..| +|++.|||. |||++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~--~-------~i~~g-~~p-~i~~spDg~~lyv~n~~~~~~~rg~~ 95 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL--G-------HVNGG-FLP-NPVAAHSGSEFALASTSFSRIAKGKR 95 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEE--E-------EecCC-CCC-CeEECCCCCEEEEEeccccccccCCC
Confidence 33467777788773 222 55666542 2211 0 00011 358 999999985 999862
Q ss_pred -ceEEEEcCC-CcEEEEeccC-ccc---ccceeEEEEeCCCCcEEEEeCC-CcEEEEEe
Q psy4832 199 -NLVRRLTPE-GNVFTVLQLS-ATQ---VSYQYYLALSPADGHLYISDAE-KHQILRVL 250 (770)
Q Consensus 199 -~~I~~i~~~-G~v~~~~~~~-~~~---~~~p~~lav~p~~g~lyvsd~~-~~~I~~i~ 250 (770)
+.|.+||.. +++...+..+ ... ...|.+++++|.+..||++... .+.|..|+
T Consensus 96 ~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD 154 (373)
T 2mad_H 96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV 154 (373)
T ss_pred CCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE
Confidence 568899874 5555444322 111 2569999999977889999865 68898884
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=0.00013 Score=78.37 Aligned_cols=247 Identities=11% Similarity=0.085 Sum_probs=149.3
Q ss_pred cCCCeEEE-CCCccEEeccc-----CCCeEEEEec---------cCcc-CCccCCCCCcccccccccCceEEEEcCCCCE
Q psy4832 130 FHEGILQK-GDGSSLHLKHE-----FPRTVSVVMG---------TGLQ-RPLVCKDCDGVARDARLLTPVALTSGPDGSL 193 (770)
Q Consensus 130 ~~~gil~~-~dG~~~~~~~~-----~~~~i~~v~g---------~G~~-~~~~~~~~~g~~~~~~l~~P~~la~~~dG~l 193 (770)
.|.||.++ .+| ++|++-- -|..+..+.. ++.. .++++. .....|.+..++.+|+.|.|
T Consensus 27 ~P~gv~vd~~~g-RiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w-----~~~~~lvsV~~v~iD~~~rL 100 (381)
T 3q6k_A 27 ISTAFAYDAEGE-KLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGH-----KTGKELTSIYQPVIDDCRRL 100 (381)
T ss_dssp CCCEEEEETTTT-EEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTC-----SSSCSSSCEEEEEECTTCEE
T ss_pred ceeeeeeecCCC-cEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCC-----ccccceEEeeEEEEcCCCcE
Confidence 58899885 777 5888631 2345555542 2234 555542 12356999999999999999
Q ss_pred EEEeCc-----------------eEEEEcCC-C--cEEEEeccCcc---cccceeEEEEe---CC----CCcEEEEeCCC
Q psy4832 194 YVGDFN-----------------LVRRLTPE-G--NVFTVLQLSAT---QVSYQYYLALS---PA----DGHLYISDAEK 243 (770)
Q Consensus 194 yv~d~~-----------------~I~~i~~~-G--~v~~~~~~~~~---~~~~p~~lav~---p~----~g~lyvsd~~~ 243 (770)
||.|.+ +|..+|.. + ++...+..+.. .-+.-..|+|| |. ++.+||+|...
T Consensus 101 WVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~ 180 (381)
T 3q6k_A 101 WVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLR 180 (381)
T ss_dssp EEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTT
T ss_pred EEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCC
Confidence 999963 35667643 5 67666554321 23456789999 32 57899999998
Q ss_pred cEEEEEeccCCccCCCCcEEEEECCCccccCCCC-CCcCCCcccccccccCcceEEEccC----C-cEEEEeCCC--eEE
Q psy4832 244 HQILRVLSLESVADPSINWEVAVGSGERCIPGDE-TNCGDNGPALAAKLSHPKGLAIKAD----K-TMFIADGTN--IRV 315 (770)
Q Consensus 244 ~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~-~~~g~~g~~~~a~l~~P~gIavd~~----G-~lYvaD~~~--Ir~ 315 (770)
..|..++. .++....+..... .|-.. .+.- .|.... ....-.|||++++ + .||+..-.. ++.
T Consensus 181 ~gLIVydl------~~~~swRv~~~~~--~pd~~~~~~i-~G~~~~-~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~ 250 (381)
T 3q6k_A 181 GALFIYDH------KKQDSWNVTHPTF--KAERPTKFDY-GGKEYE-FKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYS 250 (381)
T ss_dssp TEEEEEET------TTTEEEEEECGGG--SCCSCEEEEE-TTEEEE-ECCCEEEEEECCCCTTSCCEEEEEESSCSEEEE
T ss_pred CcEEEEEC------CCCcEEEEccCCC--ccccCcceEE-CCEEeE-eccCceEEEecCCcCCCCeEEEEEECCCCcEEE
Confidence 88888864 2343333332110 01000 0000 010000 0125678999885 3 599987443 666
Q ss_pred ECC----CC----cEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCC-c--
Q psy4832 316 VSP----EG----IIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDL-K-- 382 (770)
Q Consensus 316 id~----~G----~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G-~-- 382 (770)
+.. +. .+.. .|... ......++++|+.+|.||+++ .+.|.+.++++ .
T Consensus 251 V~T~~L~~~~~~~~v~~-~G~kg-------------------~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~ 310 (381)
T 3q6k_A 251 VNTKELKQKGGKLNPEL-LGNRG-------------------KYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLR 310 (381)
T ss_dssp EEHHHHSSTTCCCCCEE-EEECC-------------------TTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBC
T ss_pred EEHHHhhCcchhhceEE-eeecC-------------------CCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccc
Confidence 641 22 1211 11110 011234678874489999999 68999999876 2
Q ss_pred ---EEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCC
Q psy4832 383 ---VKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADID 447 (770)
Q Consensus 383 ---v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~ 447 (770)
+.+++ .+..|..|.+|+++.+|.|||....
T Consensus 311 ~~n~~~l~-----------------------------------~d~~l~~pd~~~i~~~g~Lwv~sn~ 343 (381)
T 3q6k_A 311 MKNTDVVY-----------------------------------TSSRFVFGTDISVDSKGGLWFMSNG 343 (381)
T ss_dssp GGGEEEEE-----------------------------------ECTTCCSEEEEEECTTSCEEEEECS
T ss_pred cCceEEEE-----------------------------------ECCCccccCeEEECCCCeEEEEECc
Confidence 34554 2235788999999999999998854
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.49 E-value=2.2e-05 Score=84.88 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=71.7
Q ss_pred cCCC-CEEEEeC------ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeC---------CCcEEEEEe
Q psy4832 188 GPDG-SLYVGDF------NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDA---------EKHQILRVL 250 (770)
Q Consensus 188 ~~dG-~lyv~d~------~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~---------~~~~I~~i~ 250 (770)
.|+| .+||+|. +.|.+||.+ +++...+..+ ..|. |+++|....|||+++ ..+.|..|+
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG----~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG----FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC----SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC----CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 4666 5999986 389999965 6776655432 2365 999997778999984 245688885
Q ss_pred ccCCccCCCCcE-EEE-ECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeC--CC-eEEECCC-CcEE
Q psy4832 251 SLESVADPSINW-EVA-VGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADG--TN-IRVVSPE-GIIH 323 (770)
Q Consensus 251 ~~~~~~~~~g~~-~~v-aG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~--~~-Ir~id~~-G~i~ 323 (770)
.. ++.+ ..+ .+.|.+ . ..-..|.+++++++|. |||+.. .+ |.+||.. +++.
T Consensus 116 ~~------t~~v~~~I~v~~g~r------~----------~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 116 PV------TLLPTADIELPDAPR------F----------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp TT------TCCEEEEEEETTCCC------C----------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred CC------CCeEEEEEECCCccc------c----------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEE
Confidence 32 2222 122 222111 0 0123699999999997 999974 34 8899854 5554
Q ss_pred Eee
Q psy4832 324 TLI 326 (770)
Q Consensus 324 t~~ 326 (770)
.-+
T Consensus 174 ~tI 176 (386)
T 3sjl_D 174 RML 176 (386)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=0.00029 Score=80.58 Aligned_cols=196 Identities=11% Similarity=0.007 Sum_probs=115.0
Q ss_pred EcCCCCEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEE
Q psy4832 187 SGPDGSLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWE 263 (770)
Q Consensus 187 ~~~dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~ 263 (770)
.|+.+.+||+.. +.|..||.+ +++...+..+ ..|.+++++|.+..||+++. .+.|.+|+... .++.+.
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g----~~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~----~t~~~v 233 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGR-DGKVNMIDLWM----KEPTTV 233 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEET-TSEEEEEETTS----SSCCEE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC----CCccceEECCCCCEEEEEcC-CCeEEEEECCC----CCCcEe
Confidence 445667888876 699999865 6777655432 25889999996667999875 56899995310 123222
Q ss_pred EEECCCccccCCCCCCcCCCcccccccccCcceEEEc----cCCc-EEEEeCCC--eEEECCC-CcEEEeecCCCCC---
Q psy4832 264 VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK----ADKT-MFIADGTN--IRVVSPE-GIIHTLIGHHKHH--- 332 (770)
Q Consensus 264 ~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd----~~G~-lYvaD~~~--Ir~id~~-G~i~t~~g~~~~~--- 332 (770)
.-.-.| ..|.+|+++ ++|. +|++.... |.++|.. .++...+..+...
T Consensus 234 ~~i~~G----------------------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~ 291 (567)
T 1qks_A 234 AEIKIG----------------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE 291 (567)
T ss_dssp EEEECC----------------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT
T ss_pred EEEecC----------------------CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccc
Confidence 111111 148899999 5885 89887542 7888743 4444333322100
Q ss_pred CCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe--CCEEEEEcCCC-cEEEEecCCCCCCCCCCCCcccccccc
Q psy4832 333 NIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID--DRVIFKLTNDL-KVKIVAGIPLHCRTGDKDKRDFKDKQS 408 (770)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D--~~~I~~i~~~G-~v~~vaG~~~~~~~~~~~~~~~~~~~~ 408 (770)
..|.| -..+.+|..++ ++. ++|+- .+.|..++... ....+...+.
T Consensus 292 ~~~~p-------------~~rva~i~~s~-~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~----------------- 340 (567)
T 1qks_A 292 QEYHP-------------EPRVAAILASH-YRPEFIVNVKETGKILLVDYTDLNNLKTTEISA----------------- 340 (567)
T ss_dssp CCEES-------------CCCEEEEEECS-SSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC-----------------
T ss_pred ccccC-------------CCceEEEEEcC-CCCEEEEEecCCCeEEEEecCCCccceeeeeec-----------------
Confidence 00000 01345677777 544 44443 57787777432 1111111000
Q ss_pred ccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcEEE
Q psy4832 409 KTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRMFD 465 (770)
Q Consensus 409 ~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i~~ 465 (770)
-..|+++.++++|. +|++...+++ |..+|. ++++..
T Consensus 341 ------------------~~~~~d~~~~pdgr~~~va~~~sn~---V~ViD~~t~kl~~ 378 (567)
T 1qks_A 341 ------------------ERFLHDGGLDGSHRYFITAANARNK---LVVIDTKEGKLVA 378 (567)
T ss_dssp ------------------CSSEEEEEECTTSCEEEEEEGGGTE---EEEEETTTTEEEE
T ss_pred ------------------cccccCceECCCCCEEEEEeCCCCe---EEEEECCCCcEEE
Confidence 03488999999998 7888877765 667775 566543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=0.0015 Score=81.99 Aligned_cols=193 Identities=7% Similarity=0.011 Sum_probs=103.7
Q ss_pred CceEEEEcCCCCEEEEeC--ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCC-CCcEEEEeCCCcEEEEEeccCCcc
Q psy4832 181 TPVALTSGPDGSLYVGDF--NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPA-DGHLYISDAEKHQILRVLSLESVA 256 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~--~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~-~g~lyvsd~~~~~I~~i~~~~~~~ 256 (770)
...++++.|+|.++++-. +.|+.++. +|+....+. ..-.....++++|. ++.+.++-..++.|..++.
T Consensus 659 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~----- 730 (1249)
T 3sfz_A 659 EVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD---EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL----- 730 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEET-----
T ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEc---CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEEC-----
Confidence 457899999998666543 57888875 466665553 12334578888874 3345566666667776642
Q ss_pred CCCCcEE-EEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeC-CC-eEEECCC-Cc-EEEeecCCCC
Q psy4832 257 DPSINWE-VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADG-TN-IRVVSPE-GI-IHTLIGHHKH 331 (770)
Q Consensus 257 ~~~g~~~-~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~-~~-Ir~id~~-G~-i~t~~g~~~~ 331 (770)
.++... .+.+. -.....+++.++|.+.++-+ .. |+..+.. +. +.++......
T Consensus 731 -~~~~~~~~~~~h----------------------~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 787 (1249)
T 3sfz_A 731 -NQKECRNTMFGH----------------------TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787 (1249)
T ss_dssp -TSSSEEEEECCC----------------------SSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC
T ss_pred -CCcchhheecCC----------------------CCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccc
Confidence 122222 22111 11356788999888555543 33 7776642 32 2222211100
Q ss_pred CCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEeCCEEEEEcC-CCcE-EEEecCCCCCCCCCCCCcccccccc
Q psy4832 332 HNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFIDDRVIFKLTN-DLKV-KIVAGIPLHCRTGDKDKRDFKDKQS 408 (770)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D~~~I~~i~~-~G~v-~~vaG~~~~~~~~~~~~~~~~~~~~ 408 (770)
.. . .......-.....++++| +|. |.++..+.|..++. .+.. ..+.. +
T Consensus 788 ~~--------~-~~~~~~~~~~v~~~~~s~-dg~~l~~~~~~~v~~~d~~~~~~~~~~~~-~------------------ 838 (1249)
T 3sfz_A 788 LS--------S-EDPPEDVEVIVKCCSWSA-DGDKIIVAAKNKVLLFDIHTSGLLAEIHT-G------------------ 838 (1249)
T ss_dssp -----------------CCCCCBCCCCBCT-TSSEEEEEETTEEEEEETTTCCEEEEEEC-S------------------
T ss_pred cc--------c-CCccccccceEEEEEECC-CCCEEEEEcCCcEEEEEecCCCceeEEcC-C------------------
Confidence 00 0 000000112456788888 666 44455778888774 3332 22221 0
Q ss_pred ccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCc
Q psy4832 409 KTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARK 450 (770)
Q Consensus 409 ~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~r 450 (770)
.-.....++++|+|.+.++-...+.
T Consensus 839 -----------------~~~~v~~~~~sp~~~~l~~~~~dg~ 863 (1249)
T 3sfz_A 839 -----------------HHSTIQYCDFSPYDHLAVIALSQYC 863 (1249)
T ss_dssp -----------------SSSCCCEEEECSSTTEEEEECSSSC
T ss_pred -----------------CCCceEEEEEcCCCCEEEEEeCCCe
Confidence 0123577899999987777766654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-05 Score=84.94 Aligned_cols=168 Identities=10% Similarity=0.158 Sum_probs=102.6
Q ss_pred CCCCEEEEeC---ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCC-------------CcEEEEEecc
Q psy4832 189 PDGSLYVGDF---NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAE-------------KHQILRVLSL 252 (770)
Q Consensus 189 ~dG~lyv~d~---~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~-------------~~~I~~i~~~ 252 (770)
.++-||++.. +.|.+++.+|...+.+.. ..+..|.++ ++.||+++.. .+.|++++
T Consensus 24 ~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~-----~~~~~i~~~--g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~-- 94 (302)
T 3s25_A 24 SDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN-----DTAMYINAD--KNYVYYVRNNNQKITSQTFFSYDRNSLCRIK-- 94 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEEETTSCSCEEEEE-----EEEEEEEEC--SSEEEEEEECC------CCSSCCSEEEEEEE--
T ss_pred eCCEEEEEeCCCCceEEEEcCCCCCCEEccC-----CceeeEEEc--CCEEEEEECCCCcccccceeccCCCeEEEEe--
Confidence 4778999874 699999999965554421 125667665 7899998764 36788884
Q ss_pred CCccCCCCcE-EEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEe---CCC--eEEECCCCcEE-E
Q psy4832 253 ESVADPSINW-EVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIAD---GTN--IRVVSPEGIIH-T 324 (770)
Q Consensus 253 ~~~~~~~g~~-~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD---~~~--Ir~id~~G~i~-t 324 (770)
.+|.- +.+. .-.+.++.+ .+.||++| ..+ |++++.+|.-. .
T Consensus 95 -----~dg~~~~~l~--------------------------~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~ 143 (302)
T 3s25_A 95 -----RNGHGSTVLD--------------------------PDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK 143 (302)
T ss_dssp -----TTSCCCEEEE--------------------------CSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEE
T ss_pred -----CCCCcceEee--------------------------cCCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEE
Confidence 33332 2222 111223333 45699998 344 99999887432 2
Q ss_pred eecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCcc
Q psy4832 325 LIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRD 402 (770)
Q Consensus 325 ~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~ 402 (770)
+.... . +++++.++.||+++ ...|++++.+|.-......
T Consensus 144 lt~~~---------------------~-----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~------------- 184 (302)
T 3s25_A 144 IKNHY---------------------L-----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD------------- 184 (302)
T ss_dssp EESSC---------------------C-----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC-------------
T ss_pred EeCCC---------------------c-----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC-------------
Confidence 32110 0 12344377899998 4789999987753332211
Q ss_pred ccccccccccccccCCcccccccccCCeeEEEEcCC-CCEEEEeCCCCceeeEEEEcCCCcE
Q psy4832 403 FKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPT-GDLYIADIDARKVNALRVIDSTGRM 463 (770)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~-G~lyVaD~~~~ri~~i~~i~~~G~i 463 (770)
.+..+++.|+ +.||+++.... .+|.+++.+|.-
T Consensus 185 --------------------------~~~~~~~~P~g~~iy~t~~~~~--~~I~~~~ldG~~ 218 (302)
T 3s25_A 185 --------------------------CNCYKPVVLDDTNVYYMDVNRD--NAIVHVNINNPN 218 (302)
T ss_dssp --------------------------SCEEEEEEEETTEEEEEEGGGT--TEEEEECSSSCC
T ss_pred --------------------------CCccceeeecCCEEEEEEcCCC--cEEEEEECCCCC
Confidence 0122335564 56999998654 357888887753
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.43 E-value=7.2e-05 Score=80.64 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=51.1
Q ss_pred CceEEEEcCCCC-EEEEeC-----------ceEEEEcCC-CcEEEEeccCcc---cccceeEEEEeCCCCcEEEEeCC-C
Q psy4832 181 TPVALTSGPDGS-LYVGDF-----------NLVRRLTPE-GNVFTVLQLSAT---QVSYQYYLALSPADGHLYISDAE-K 243 (770)
Q Consensus 181 ~P~~la~~~dG~-lyv~d~-----------~~I~~i~~~-G~v~~~~~~~~~---~~~~p~~lav~p~~g~lyvsd~~-~ 243 (770)
.| .|+++|||. ||+++. +.|..++.. +++...+..... .-..|.+|+++|.+..||+++.. .
T Consensus 52 ~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~ 130 (361)
T 2oiz_A 52 NG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPA 130 (361)
T ss_dssp EE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSS
T ss_pred CC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCC
Confidence 58 999999985 899862 468999864 566544432211 22579999999977789999875 6
Q ss_pred cEEEEEec
Q psy4832 244 HQILRVLS 251 (770)
Q Consensus 244 ~~I~~i~~ 251 (770)
+.|..++.
T Consensus 131 ~~v~v~d~ 138 (361)
T 2oiz_A 131 TSIGIVDV 138 (361)
T ss_dssp EEEEEEET
T ss_pred CeEEEEEC
Confidence 78888853
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.9e-05 Score=82.05 Aligned_cols=158 Identities=14% Similarity=0.124 Sum_probs=91.1
Q ss_pred CeEEECCCccEEecccCCCeEEEEecc-CccC-CccCCCCCcccccccccCceEEEEcCCCC-EEEEeC--ceEEEEcCC
Q psy4832 133 GILQKGDGSSLHLKHEFPRTVSVVMGT-GLQR-PLVCKDCDGVARDARLLTPVALTSGPDGS-LYVGDF--NLVRRLTPE 207 (770)
Q Consensus 133 gil~~~dG~~~~~~~~~~~~i~~v~g~-G~~~-~~~~~~~~g~~~~~~l~~P~~la~~~dG~-lyv~d~--~~I~~i~~~ 207 (770)
|+....++ .++++....+.|.++... |... .+. ......|.+++++|+|. +|++.. +.|.+++.+
T Consensus 4 g~~~~~~~-~~~v~~~~~~~v~~~d~~~~~~~~~~~---------~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~ 73 (349)
T 1jmx_B 4 GPALKAGH-EYMIVTNYPNNLHVVDVASDTVYKSCV---------MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 73 (349)
T ss_dssp CCCCCTTC-EEEEEEETTTEEEEEETTTTEEEEEEE---------CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred cccccCCC-EEEEEeCCCCeEEEEECCCCcEEEEEe---------cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC
Confidence 44333444 456655466777777642 2211 010 01112588999999997 788875 589999865
Q ss_pred -CcEEEEeccCcc---cccceeEEEEeCCCCcEEEEeCC-----------CcEEEEEeccCCccCCCCcEEEEECCCccc
Q psy4832 208 -GNVFTVLQLSAT---QVSYQYYLALSPADGHLYISDAE-----------KHQILRVLSLESVADPSINWEVAVGSGERC 272 (770)
Q Consensus 208 -G~v~~~~~~~~~---~~~~p~~lav~p~~g~lyvsd~~-----------~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~ 272 (770)
++....+..... ....|.+++++|.+..||++... .+.|+.++..... ....+....
T Consensus 74 t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~------ 145 (349)
T 1jmx_B 74 TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL--EAKPVRTFP------ 145 (349)
T ss_dssp TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG--GBCCSEEEE------
T ss_pred CCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc--ccceeeecc------
Confidence 666554432111 03447899999866678888744 4677777432100 000000000
Q ss_pred cCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCCeEEECC-CCcEEEee
Q psy4832 273 IPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTNIRVVSP-EGIIHTLI 326 (770)
Q Consensus 273 ~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~Ir~id~-~G~i~t~~ 326 (770)
.-..+.+++++++|.||+++. .|+.+|. +|.+...+
T Consensus 146 -----------------~~~~~~~~~~s~dg~l~~~~~-~i~~~d~~~~~~~~~~ 182 (349)
T 1jmx_B 146 -----------------MPRQVYLMRAADDGSLYVAGP-DIYKMDVKTGKYTVAL 182 (349)
T ss_dssp -----------------CCSSCCCEEECTTSCEEEESS-SEEEECTTTCCEEEEE
T ss_pred -----------------CCCcccceeECCCCcEEEccC-cEEEEeCCCCceeccc
Confidence 011467889999999888643 3999986 46655444
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=0.0099 Score=70.89 Aligned_cols=239 Identities=9% Similarity=0.092 Sum_probs=141.5
Q ss_pred ceEEEEcCCCCEEEEeCceEEEEcCCCcEEEEeccCcccccc-eeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCC
Q psy4832 182 PVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSY-QYYLALSPADGHLYISDAEKHQILRVLSLESVADPSI 260 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~~~I~~i~~~G~v~~~~~~~~~~~~~-p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g 260 (770)
...|+.+++|.|||+..+.|.++++.......+... ..... ...|..++ ++.|||.... +.|++++. .++
T Consensus 133 i~~i~~d~~g~lwi~t~~gl~~~~~~~~~~~~~~~~-~~~~~~i~~i~~d~-~g~lwigt~~-~Gl~~~~~------~~~ 203 (795)
T 4a2l_A 133 VNGIEEISPEQLLISTPEGLIMFDIKESKFIDDSFS-TAMHKTIASTLYRQ-GDQIYIGTST-DGLYTYSI------TQK 203 (795)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEETTTTEEECSSSC-HHHHTCCEEEEEEE-TTEEEEEESS-SCEEEEET------TTC
T ss_pred EEEEEECCCCCEEEEECCceEEEECCCCEEEeccCC-CCCCcceEEEEECC-CCCEEEEECC-CCEEEEeC------CCC
Confidence 567899999999999888899998754333222110 01112 56788885 8999997653 35788842 123
Q ss_pred cEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC-CeEEECCCC-cEEEeecCCCCCCCcCCC
Q psy4832 261 NWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT-NIRVVSPEG-IIHTLIGHHKHHNIWSPF 338 (770)
Q Consensus 261 ~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~-~Ir~id~~G-~i~t~~g~~~~~~~~~p~ 338 (770)
.+..+... . .-.....|..|++|.|||+... .|.++++.. .+..+.-.....
T Consensus 204 ~~~~~~~~----------~----------~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~------ 257 (795)
T 4a2l_A 204 TFEKVIPI----------L----------GTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNP------ 257 (795)
T ss_dssp CEEECC------------------------CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCT------
T ss_pred eEEEecCC----------C----------CCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCc------
Confidence 33222100 0 0123567888999999998754 388898764 455443211000
Q ss_pred ccCCCcccccccccCcceEEEeCCCCeEEEEeCCEEEEEcCC-CcEEEEecCCCCCCCCCCCCccccccccccccccccC
Q psy4832 339 NCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQD 417 (770)
Q Consensus 339 ~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (770)
. ...-.....|+.|+ +|.|||+..+-|.++++. +.+..+.-.+.....
T Consensus 258 ---~-----~l~~~~i~~i~~d~-~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~---------------------- 306 (795)
T 4a2l_A 258 ---K-----SISSNYIRSLAMDS-QNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGS---------------------- 306 (795)
T ss_dssp ---T-----SCSCSBEEEEEECT-TSCEEEEESSCEEEEETTTTEEEEECCCTTSTTS----------------------
T ss_pred ---c-----ccCCCeEEEEEEcC-CCCEEEEeCChhheEcCCCCeEEEEecCCCCCCC----------------------
Confidence 0 00112356889998 999999876688999865 455544321111000
Q ss_pred CcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCC-CcEEEeecCccCCCCCcCCCCCcccccCccCccccc
Q psy4832 418 DSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDST-GRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTS 496 (770)
Q Consensus 418 ~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~-G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 496 (770)
-.-.....|..|++|+|||+-..+. |..+++. +.+..+.-... ...+
T Consensus 307 -------l~~~~i~~i~~D~~g~lWigt~~~G----l~~~~~~~~~~~~~~~~~~-------------------~~~l-- 354 (795)
T 4a2l_A 307 -------LSQRSVRSIFMDSQGGMWLGTYFGG----LNYYHPIRNRFKNIRNIPY-------------------KNSL-- 354 (795)
T ss_dssp -------CSSSCEEEEEECTTSCEEEEESSSC----EEEECGGGGSSEEECCCTT-------------------SSSC--
T ss_pred -------CCCCcEEEEEEeCCcCEEEEECCCC----eEEeCCCcccceEEcCCCC-------------------CCCC--
Confidence 0013468899999999999987654 5666653 33433321110 0000
Q ss_pred ceecCCeeEEEEcCCCcEEEEcCC
Q psy4832 497 TARFTSISALSVSPDGVVNVADQG 520 (770)
Q Consensus 497 ~~~l~~P~giav~~dG~lyvaD~~ 520 (770)
.-+...+|+.+++|.|||+..+
T Consensus 355 --~~~~V~~i~~d~~g~lWiGt~~ 376 (795)
T 4a2l_A 355 --SDNVVSCIVEDKDKNLWIGTND 376 (795)
T ss_dssp --SCSSEEEEEECTTSCEEEEESS
T ss_pred --CCCeeEEEEECCCCCEEEEECC
Confidence 1134678999999999998654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00029 Score=84.13 Aligned_cols=241 Identities=6% Similarity=0.114 Sum_probs=148.8
Q ss_pred CceEEEEcCCCCEEEEeC-ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC
Q psy4832 181 TPVALTSGPDGSLYVGDF-NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP 258 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~-~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~ 258 (770)
...+|+.|++|.|||+.. +.|.++++. +++..+. ...........|+.++ +|.|||+.. +.|.+++..
T Consensus 408 ~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~-~~~~~~~~v~~i~~d~-~g~lwigt~--~Gl~~~~~~------ 477 (781)
T 3v9f_A 408 SVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIE-LEKNELLDVRVFYEDK-NKKIWIGTH--AGVFVIDLA------ 477 (781)
T ss_dssp BEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECC-STTTCCCCEEEEEECT-TSEEEEEET--TEEEEEESS------
T ss_pred ceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEec-cCCCCCCeEEEEEECC-CCCEEEEEC--CceEEEeCC------
Confidence 467899999999999987 689999876 4444432 1111224567888885 899999986 578888532
Q ss_pred CCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC-CeEEECCCC-cEEEeecCCCCCCCcC
Q psy4832 259 SINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT-NIRVVSPEG-IIHTLIGHHKHHNIWS 336 (770)
Q Consensus 259 ~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~-~Ir~id~~G-~i~t~~g~~~~~~~~~ 336 (770)
++.+..+..... . ......+..|+.|++|+|||+-.. .|.+++++. .+..+.....
T Consensus 478 ~~~~~~~~~~~~------------~----~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~------ 535 (781)
T 3v9f_A 478 SKKVIHHYDTSN------------S----QLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEG------ 535 (781)
T ss_dssp SSSCCEEECTTT------------S----SCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTT------
T ss_pred CCeEEecccCcc------------c----ccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCC------
Confidence 233333321100 0 000235678999999999999864 499999764 4544332110
Q ss_pred CCccCCCcccccccccCcceEEEeCCCCeEEEEeCCEE-EEEcCC-CcEEEEecCCCCCCCCCCCCcccccccccccccc
Q psy4832 337 PFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVI-FKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKST 414 (770)
Q Consensus 337 p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~~~I-~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (770)
. .-....+|+.|+ +|.||++..+-+ .++++. +++..+.-. ..
T Consensus 536 -------l-----~~~~i~~i~~d~-~g~lWi~T~~Glv~~~d~~~~~~~~~~~~--~g--------------------- 579 (781)
T 3v9f_A 536 -------F-----CSNTINQIYRSS-KGQMWLATGEGLVCFPSARNFDYQVFQRK--EG--------------------- 579 (781)
T ss_dssp -------C-----SCSCEEEEEECT-TSCEEEEETTEEEEESCTTTCCCEEECGG--GT---------------------
T ss_pred -------C-----CCCeeEEEEECC-CCCEEEEECCCceEEECCCCCcEEEcccc--CC---------------------
Confidence 0 112456889998 999999987666 898865 444433210 00
Q ss_pred ccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCC-CcEEEeecCccCCCCCcCCCCCcccccCccCcc
Q psy4832 415 VQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDST-GRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETL 493 (770)
Q Consensus 415 ~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~-G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~ 493 (770)
+ .-....+|+.|++|+||++... -|.++++. +++..+- .. ++.
T Consensus 580 ------l----~~~~i~~i~~d~~g~lW~~t~~-----Gl~~~~~~~~~~~~~~-~~--------------------dGl 623 (781)
T 3v9f_A 580 ------L----PNTHIRAISEDKNGNIWASTNT-----GISCYITSKKCFYTYD-HS--------------------NNI 623 (781)
T ss_dssp ------C----SCCCCCEEEECSSSCEEEECSS-----CEEEEETTTTEEEEEC-GG--------------------GTC
T ss_pred ------C----CCceEEEEEECCCCCEEEEcCC-----ceEEEECCCCceEEec-cc--------------------CCc
Confidence 0 0012478999999999999643 26677775 4444432 11 111
Q ss_pred cccceecCCeeEEEEcCCCcEEEEcCCCceEEeeecC
Q psy4832 494 LTSTARFTSISALSVSPDGVVNVADQGSLHILALQHY 530 (770)
Q Consensus 494 ~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~ 530 (770)
.... | .+.+++.+++|.||+.-... +..+.+.
T Consensus 624 ~~~~--f-~~~~~~~~~~G~l~~g~~~G--l~~f~p~ 655 (781)
T 3v9f_A 624 PQGS--F-ISGCVTKDHNGLIYFGSING--LCFFNPD 655 (781)
T ss_dssp CSSC--E-EEEEEEECTTSCEEEEETTE--EEEECSC
T ss_pred cccc--c-ccCceEECCCCEEEEECCCc--eEEEChh
Confidence 1111 1 24578889999999987543 5566554
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00031 Score=76.00 Aligned_cols=110 Identities=13% Similarity=0.034 Sum_probs=68.9
Q ss_pred cCCCeEEECCCccEEecccC---------CCeEEEEecc-CccC-CccCCCCCcccccccccCceEEEEcCCCC-EEEEe
Q psy4832 130 FHEGILQKGDGSSLHLKHEF---------PRTVSVVMGT-GLQR-PLVCKDCDGVARDARLLTPVALTSGPDGS-LYVGD 197 (770)
Q Consensus 130 ~~~gil~~~dG~~~~~~~~~---------~~~i~~v~g~-G~~~-~~~~~~~~g~~~~~~l~~P~~la~~~dG~-lyv~d 197 (770)
.| ++...+||..+|+++.. ...|.++... ++.. .+. ..+.........|.+++++|||. |||+.
T Consensus 68 ~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~---~~~~~~~~~g~~p~~~~~spDG~~l~v~n 143 (373)
T 2mad_H 68 LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIE---LPDAPRFDVGPYSWMNANTPNNADLLFFQ 143 (373)
T ss_pred CC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEE---CCCccccccCCCccceEECCCCCEEEEEe
Confidence 35 89999999999998631 3567777542 2211 111 11000000124699999999986 88886
Q ss_pred C---ceEEEEcCCCcEEEE-eccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 198 F---NLVRRLTPEGNVFTV-LQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 198 ~---~~I~~i~~~G~v~~~-~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
. +.|..||.++++... +.. |..+.+.|.....|++...++++..++
T Consensus 144 ~~~~~~v~viD~t~~~~~~~i~~-------~~~~~~~~~~~~~~~~~~~dg~~~~vd 193 (373)
T 2mad_H 144 FAAGPAVGLVVQGGSSDDQLLSS-------PTCYHIHPGAPSTFYLLCAQGGLAKTD 193 (373)
T ss_pred cCCCCeEEEEECCCCEEeEEcCC-------CceEEEEeCCCceEEEEcCCCCEEEEE
Confidence 3 579999834666544 432 333556666678888888888888884
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=0.013 Score=69.98 Aligned_cols=321 Identities=10% Similarity=0.069 Sum_probs=178.2
Q ss_pred CCeEEECCCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccc--cCceEEEEcCCCCEEEEeCceEEEEcCC-C
Q psy4832 132 EGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARL--LTPVALTSGPDGSLYVGDFNLVRRLTPE-G 208 (770)
Q Consensus 132 ~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l--~~P~~la~~~dG~lyv~d~~~I~~i~~~-G 208 (770)
..|+++.+| .+|+.. ..-+..+.|.- ...+.....+ ...| ..-.+|+.|++|.|||+..+.+.++++. +
T Consensus 46 ~~I~qD~~G-~lWigT--~~GL~ryDG~~-f~~~~~~~~~----~~~l~~n~I~~i~~d~~g~lWigT~~Gl~~yd~~~~ 117 (795)
T 4a2l_A 46 FSIDQDKRG-NMWFAT--YDGVNKYDGYA-FTVYQHNEDD----PNSIANDISRIVKTDSQGRVWIGTRDGLSRYDEEKD 117 (795)
T ss_dssp EEEEECTTS-CEEEEE--TTEEEEECSSC-EEEECCCTTC----TTSCSCSCEEEEEECTTSCEEEEESSCEEEEETTTT
T ss_pred EEEEEcCCC-CEEEee--cCcCcccCCCc-eEEEeCCCCC----CCcccccceeEEEECCCCCEEEEeCCchheeCCCCC
Confidence 357778888 466663 33456666531 1222111001 1112 3457899999999999988889999875 4
Q ss_pred cEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCccccc
Q psy4832 209 NVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALA 288 (770)
Q Consensus 209 ~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~ 288 (770)
++..+.............|+.++ +|.|||+.. +.|++++.. ++.+..+.. +
T Consensus 118 ~f~~~~~~~~~~~~~i~~i~~d~-~g~lwi~t~--~gl~~~~~~------~~~~~~~~~---------------~----- 168 (795)
T 4a2l_A 118 IFQNFFYEKNGKHLQVNGIEEIS-PEQLLISTP--EGLIMFDIK------ESKFIDDSF---------------S----- 168 (795)
T ss_dssp EEEEECCEETTEECCCCEEEEEE-TTEEEEEET--TEEEEEETT------TTEEECSSS---------------C-----
T ss_pred eEEeccccccCCCceEEEEEECC-CCCEEEEEC--CceEEEECC------CCEEEeccC---------------C-----
Confidence 55444321111111156788884 899999876 568888521 222211100 0
Q ss_pred ccccC-cceEEEccCCcEEEEeCC-CeEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe
Q psy4832 289 AKLSH-PKGLAIKADKTMFIADGT-NIRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS 365 (770)
Q Consensus 289 a~l~~-P~gIavd~~G~lYvaD~~-~Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~ 365 (770)
..... ...|..|++|.|||+... .|.++++. +.+..+.... .-.....|..++ +|.
T Consensus 169 ~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~--------------------~~~~i~~i~~d~-~g~ 227 (795)
T 4a2l_A 169 TAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPIL--------------------GTKQIQAILQQS-PTR 227 (795)
T ss_dssp HHHHTCCEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC------------------------CCCEEEEEEEE-TTE
T ss_pred CCCCcceEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCC--------------------CCCeeEEEEEcC-CCC
Confidence 00112 567889999999998754 48888854 4554432110 012356788888 899
Q ss_pred EEEEe-CCEEEEEcCCC-cEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEE
Q psy4832 366 LHFID-DRVIFKLTNDL-KVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYI 443 (770)
Q Consensus 366 lyv~D-~~~I~~i~~~G-~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyV 443 (770)
|||+. .+.|+++++.. ++..+.-.+..... -.-.....|+.|++|.|||
T Consensus 228 lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~-----------------------------l~~~~i~~i~~d~~g~lWi 278 (795)
T 4a2l_A 228 IWVATEGAGLFLINPKTKEIKNYLHSPSNPKS-----------------------------ISSNYIRSLAMDSQNRLWI 278 (795)
T ss_dssp EEEEEBSSCEEEEETTTTEEEEECCCTTCTTS-----------------------------CSCSBEEEEEECTTSCEEE
T ss_pred EEEEECCCCeEEEeCCCCeEEEeecCCCCccc-----------------------------cCCCeEEEEEEcCCCCEEE
Confidence 99986 56799999654 45444311100000 0013468899999999999
Q ss_pred EeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCc
Q psy4832 444 ADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSL 522 (770)
Q Consensus 444 aD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~ 522 (770)
+... . +..+++ .+.+..+.-.... ...+ .-+...+|..|++|.|||+..+++
T Consensus 279 gt~~-G----l~~~~~~~~~~~~~~~~~~~------------------~~~l----~~~~i~~i~~D~~g~lWigt~~~G 331 (795)
T 4a2l_A 279 GTFN-D----LNIYHEGTDSFASYSSNPVE------------------NGSL----SQRSVRSIFMDSQGGMWLGTYFGG 331 (795)
T ss_dssp EESS-C----EEEEETTTTEEEEECCCTTS------------------TTSC----SSSCEEEEEECTTSCEEEEESSSC
T ss_pred EeCC-h----hheEcCCCCeEEEEecCCCC------------------CCCC----CCCcEEEEEEeCCcCEEEEECCCC
Confidence 8764 3 566665 4555444321100 0000 113477899999999999875432
Q ss_pred eEEeeecCCc------------ccCCCCcEEEeCCCCCcEEEEecCCceEEEEcCCCC
Q psy4832 523 HILALQHYLP------------THDEHGEFKIPYPATNEIYVFNRYGQHITTRDMTSG 568 (770)
Q Consensus 523 ~I~~i~~~~~------------~~~~~g~~~i~~~~~~e~yvfd~~G~~~~t~d~~tg 568 (770)
|.++..... .........+..+..+.+|+-...+ -+...+..++
T Consensus 332 -l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~-Gl~~~~~~~~ 387 (795)
T 4a2l_A 332 -LNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDG-GLNLYNPITQ 387 (795)
T ss_dssp -EEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSS-CEEEECTTTC
T ss_pred -eEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCC-CeEEEcCCCC
Confidence 333332111 0011123445555566777765432 2444554443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.31 E-value=9.9e-05 Score=81.03 Aligned_cols=108 Identities=17% Similarity=0.104 Sum_probs=67.3
Q ss_pred CCcEEEEeCCC----cEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEE
Q psy4832 233 DGHLYISDAEK----HQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFI 307 (770)
Q Consensus 233 ~g~lyvsd~~~----~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYv 307 (770)
...+||++... +.|.+|+. .++.+....-.| ..| +|+++++|. |||
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~------~t~~vv~~I~vG----------------------~~P-gia~SpDgk~lyV 134 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDG------STGRILGMTDGG----------------------FLP-HPVAAEDGSFFAQ 134 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEET------TTTEEEEEEEEC----------------------SSC-EEEECTTSSCEEE
T ss_pred CCEEEEECCCcCCCCCeEEEEEC------CCCEEEEEEECC----------------------CCC-ceEECCCCCEEEE
Confidence 46799999865 78999953 223322211111 158 999999886 999
Q ss_pred EeC----------CC-eEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEe---C
Q psy4832 308 ADG----------TN-IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID---D 371 (770)
Q Consensus 308 aD~----------~~-Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D---~ 371 (770)
++. .+ |.+||.. +++..-+..+... .......|.+++++| +| .|||++ .
T Consensus 135 an~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~--------------r~~~g~~P~~~~~sp-DGk~lyV~n~~~~ 199 (426)
T 3c75_H 135 ASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP--------------RFLVGTYQWMNALTP-DNKNLLFYQFSPA 199 (426)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC--------------CCCBSCCGGGSEECT-TSSEEEEEECSSS
T ss_pred EeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc--------------ccccCCCcceEEEcC-CCCEEEEEecCCC
Confidence 974 23 8999964 5543322111000 000124699999999 65 699987 4
Q ss_pred CEEEEEcC-CCcEE
Q psy4832 372 RVIFKLTN-DLKVK 384 (770)
Q Consensus 372 ~~I~~i~~-~G~v~ 384 (770)
+.|..||. .+++.
T Consensus 200 ~~VsVID~~t~kvv 213 (426)
T 3c75_H 200 PAVGVVDLEGKTFD 213 (426)
T ss_dssp CEEEEEETTTTEEE
T ss_pred CeEEEEECCCCeEE
Confidence 78999995 45543
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00038 Score=74.72 Aligned_cols=246 Identities=11% Similarity=0.120 Sum_probs=143.6
Q ss_pred cCceEEEEc-CCCCEEEEeC-------ceEEEEcC---------CCcEEEEecc--CcccccceeEEEEeCCCCcEEEEe
Q psy4832 180 LTPVALTSG-PDGSLYVGDF-------NLVRRLTP---------EGNVFTVLQL--SATQVSYQYYLALSPADGHLYISD 240 (770)
Q Consensus 180 ~~P~~la~~-~dG~lyv~d~-------~~I~~i~~---------~G~v~~~~~~--~~~~~~~p~~lav~p~~g~lyvsd 240 (770)
.-|.+|++| .+|.|||+=. ..+-.++. ++.+..-+.. ....+...+++.+|+ .+.|||.|
T Consensus 26 ~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~~v~iD~-~~rLWVLD 104 (381)
T 3q6k_A 26 MISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDD-CRRLWVVD 104 (381)
T ss_dssp CCCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEEEEEECT-TCEEEEEE
T ss_pred cceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEeeEEEEcC-CCcEEEEe
Confidence 358999995 8999999753 13444432 2233122221 245688899999995 99999999
Q ss_pred CCC---------------cEEEEEeccCCccCCCC-cEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEc-c--
Q psy4832 241 AEK---------------HQILRVLSLESVADPSI-NWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK-A-- 301 (770)
Q Consensus 241 ~~~---------------~~I~~i~~~~~~~~~~g-~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd-~-- 301 (770)
++. -+|..++.. .++ .+....-.... .+.. -.....|+|| .
T Consensus 105 tG~~~~~~~~~~~~~~~~pkLv~~DL~-----t~~~~li~~y~~p~~-------------~~~~--~S~l~di~VD~~~~ 164 (381)
T 3q6k_A 105 IGSVEYRSRGAKDYPSHRPAIVAYDLK-----QPNYPEVVRYYFPTR-------------LVEK--PTYFGGFAVDVANP 164 (381)
T ss_dssp CSSCSSCSTTGGGSCCCCCEEEEEESS-----STTCCEEEEEECCGG-------------GCCC--GGGEEEEEEEESCT
T ss_pred CCCcCcCCCccccCCCCCceEEEEECC-----CCCceeEEEEECCHH-------------hccc--CCccceEEEecccC
Confidence 872 145555431 110 22211111110 0000 1245689998 2
Q ss_pred -----CCcEEEEeCCC--eEEECC-CCcEEEeecCCCCCCCcCCCccCCCcccccccc---cCcceEEEeCC----CCeE
Q psy4832 302 -----DKTMFIADGTN--IRVVSP-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQL---QWPTGLALSPL----DDSL 366 (770)
Q Consensus 302 -----~G~lYvaD~~~--Ir~id~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l---~~P~gla~d~~----~g~l 366 (770)
++.+||+|... |.++|. +|+...+... ++.|... .........| ..-.|||++|. ...|
T Consensus 165 ~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~-----~~~pd~~-~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~L 238 (381)
T 3q6k_A 165 KGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHP-----TFKAERP-TKFDYGGKEYEFKAGIFGITLGDRDSEGNRPA 238 (381)
T ss_dssp TTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECG-----GGSCCSC-EEEEETTEEEEECCCEEEEEECCCCTTSCCEE
T ss_pred CCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccC-----CCccccC-cceEECCEEeEeccCceEEEecCCcCCCCeEE
Confidence 45699999766 888884 4666666521 1233200 0001111122 24578999984 3469
Q ss_pred EEEe--CCEEEEEcC----CCc----EEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEc
Q psy4832 367 HFID--DRVIFKLTN----DLK----VKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFS 436 (770)
Q Consensus 367 yv~D--~~~I~~i~~----~G~----v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd 436 (770)
|+.- +.++++|.. +.. ++.+ | .........++++|
T Consensus 239 Yf~plss~~ly~V~T~~L~~~~~~~~v~~~-G----------------------------------~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 239 YYLAGSAIKVYSVNTKELKQKGGKLNPELL-G----------------------------------NRGKYNDAIALAYD 283 (381)
T ss_dssp EEEESSCSEEEEEEHHHHSSTTCCCCCEEE-E----------------------------------ECCTTCCEEEEEEC
T ss_pred EEEECCCCcEEEEEHHHhhCcchhhceEEe-e----------------------------------ecCCCCCcceEEEe
Confidence 9987 568888862 221 1111 1 00001234578887
Q ss_pred -CCCCEEEEeCCCCceeeEEEEcCCC------cEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEc
Q psy4832 437 -PTGDLYIADIDARKVNALRVIDSTG------RMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVS 509 (770)
Q Consensus 437 -~~G~lyVaD~~~~ri~~i~~i~~~G------~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~ 509 (770)
.+|.||+++...+. |...++++ .+.+++ ...+|..|.+++++
T Consensus 284 ~~~G~ly~~~~~~~a---I~~w~~~~~~~~~~n~~~l~----------------------------~d~~l~~pd~~~i~ 332 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQ---VSCWNTQKMPLRMKNTDVVY----------------------------TSSRFVFGTDISVD 332 (381)
T ss_dssp TTTCEEEEEESSSSE---EEEEETTSCSBCGGGEEEEE----------------------------ECTTCCSEEEEEEC
T ss_pred CCCCeEEEEeccCCe---EEEEeCCCCccccCceEEEE----------------------------ECCCccccCeEEEC
Confidence 78999999998875 66667765 234443 12268889999999
Q ss_pred CCCcEEEEc
Q psy4832 510 PDGVVNVAD 518 (770)
Q Consensus 510 ~dG~lyvaD 518 (770)
++|.||+..
T Consensus 333 ~~g~Lwv~s 341 (381)
T 3q6k_A 333 SKGGLWFMS 341 (381)
T ss_dssp TTSCEEEEE
T ss_pred CCCeEEEEE
Confidence 999999975
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00011 Score=79.33 Aligned_cols=67 Identities=10% Similarity=0.021 Sum_probs=50.3
Q ss_pred CceEEEEcCCC-CEEEEe-----------CceEEEEcCC-CcEEEEeccC-ccc---ccceeEEEEeCCCCcEEEEeCC-
Q psy4832 181 TPVALTSGPDG-SLYVGD-----------FNLVRRLTPE-GNVFTVLQLS-ATQ---VSYQYYLALSPADGHLYISDAE- 242 (770)
Q Consensus 181 ~P~~la~~~dG-~lyv~d-----------~~~I~~i~~~-G~v~~~~~~~-~~~---~~~p~~lav~p~~g~lyvsd~~- 242 (770)
.| +++++||| .|||++ .+.|.+||+. +++...+..+ ... ...|.+++++|.+..|||++..
T Consensus 67 ~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~ 145 (368)
T 1mda_H 67 LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS 145 (368)
T ss_dssp TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS
T ss_pred CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCC
Confidence 48 89999988 599997 3689999964 6776555432 111 2579999999977799999875
Q ss_pred CcEEEE
Q psy4832 243 KHQILR 248 (770)
Q Consensus 243 ~~~I~~ 248 (770)
.+.|..
T Consensus 146 ~~~v~V 151 (368)
T 1mda_H 146 SAAAGL 151 (368)
T ss_dssp SCEEEE
T ss_pred CCeEEE
Confidence 566776
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.0031 Score=67.91 Aligned_cols=295 Identities=13% Similarity=-0.015 Sum_probs=149.0
Q ss_pred ceeeeeecCCCeEEECCCc-cEEecccCCCeEEEEec-----cCcc-------CCccCCCCCcccccccccCceEEEEcC
Q psy4832 123 DVHHHYNFHEGILQKGDGS-SLHLKHEFPRTVSVVMG-----TGLQ-------RPLVCKDCDGVARDARLLTPVALTSGP 189 (770)
Q Consensus 123 ~~~~~~~~~~gil~~~dG~-~~~~~~~~~~~i~~v~g-----~G~~-------~~~~~~~~~g~~~~~~l~~P~~la~~~ 189 (770)
..|.+.+....+...++|. .+.... ..+.|....- +|.. ..+.............-.....+++.|
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 118 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGE-KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH 118 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEE-TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT
T ss_pred eeeeccCceEEEEECCCCCcEEEEec-CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC
Confidence 3455667777888888887 555544 6666666543 2221 001000000000001122568899999
Q ss_pred CCCEEEE-eC-ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEEC
Q psy4832 190 DGSLYVG-DF-NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVG 267 (770)
Q Consensus 190 dG~lyv~-d~-~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG 267 (770)
+|.++++ .. +.|+.++.+++....+. ........++++| ++..+++-..++.|..++. .++.......
T Consensus 119 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~------~~~~~~~~~~ 188 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWNKTGALLNVLN---FHRAPIVSVKWNK-DGTHIISMDVENVTILWNV------ISGTVMQHFE 188 (425)
T ss_dssp TSSEEEEEETTSCEEEEETTSCEEEEEC---CCCSCEEEEEECT-TSSEEEEEETTCCEEEEET------TTTEEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeeecc---CCCccEEEEEECC-CCCEEEEEecCCeEEEEEC------CCCcEEEEee
Confidence 9986654 33 47888888888776653 2334568899998 5554444444566766642 1233222221
Q ss_pred CCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECCCC-c-EEEeecCCCCCCCcCCCccCCCc
Q psy4832 268 SGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSPEG-I-IHTLIGHHKHHNIWSPFNCHRSF 344 (770)
Q Consensus 268 ~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~~G-~-i~t~~g~~~~~~~~~p~~~~~~~ 344 (770)
.... + ... -........-.....+++.+++.++++.... |+.++... . +..+.+.
T Consensus 189 ~~~~--~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~---------------- 246 (425)
T 1r5m_A 189 LKET--G---GSS-INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGH---------------- 246 (425)
T ss_dssp CC---------------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCC----------------
T ss_pred cccc--C---ccc-eeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccC----------------
Confidence 1100 0 000 0000000001125677887777766665444 77776432 1 2222111
Q ss_pred ccccccccCcceEEEeCCCCeEEE-Ee-CCEEEEEcCC-Cc-EEEEecCCCCCCCCCCCCccccccccccccccccCCcc
Q psy4832 345 PASTAQLQWPTGLALSPLDDSLHF-ID-DRVIFKLTND-LK-VKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420 (770)
Q Consensus 345 ~~~~~~l~~P~gla~d~~~g~lyv-~D-~~~I~~i~~~-G~-v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (770)
-.....++++| ++.+++ +. ++.|+.++.. ++ +..+.+
T Consensus 247 ------~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------------------------------- 287 (425)
T 1r5m_A 247 ------HGPISVLEFND-TNKLLLSASDDGTLRIWHGGNGNSQNCFYG-------------------------------- 287 (425)
T ss_dssp ------SSCEEEEEEET-TTTEEEEEETTSCEEEECSSSBSCSEEECC--------------------------------
T ss_pred ------CCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCccceEecC--------------------------------
Confidence 12356799998 665444 43 4667666632 22 111111
Q ss_pred cccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCcccccCccCccccccee
Q psy4832 421 RASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTAR 499 (770)
Q Consensus 421 ~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 499 (770)
.-.....++++++| ++++-...+. |+..+. +++.....-..
T Consensus 288 -----~~~~i~~~~~~~~~-~l~~~~~d~~---i~i~d~~~~~~~~~~~~~----------------------------- 329 (425)
T 1r5m_A 288 -----HSQSIVSASWVGDD-KVISCSMDGS---VRLWSLKQNTLLALSIVD----------------------------- 329 (425)
T ss_dssp -----CSSCEEEEEEETTT-EEEEEETTSE---EEEEETTTTEEEEEEECT-----------------------------
T ss_pred -----CCccEEEEEECCCC-EEEEEeCCCc---EEEEECCCCcEeEecccC-----------------------------
Confidence 01236889999998 5555555443 566664 44432221100
Q ss_pred cCCeeEEEEcCCCcEEEEcCCCceEEee
Q psy4832 500 FTSISALSVSPDGVVNVADQGSLHILAL 527 (770)
Q Consensus 500 l~~P~giav~~dG~lyvaD~~~~~I~~i 527 (770)
-..+..++++|+|.++++-..++.|+..
T Consensus 330 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 357 (425)
T 1r5m_A 330 GVPIFAGRISQDGQKYAVAFMDGQVNVY 357 (425)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CccEEEEEEcCCCCEEEEEECCCeEEEE
Confidence 1236789999999877765444444444
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.02 Score=68.10 Aligned_cols=256 Identities=12% Similarity=0.134 Sum_probs=137.7
Q ss_pred CceEEEEcC--CCCEEEEe-CceEEEEcCC-CcEEEEeccCc--ccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCC
Q psy4832 181 TPVALTSGP--DGSLYVGD-FNLVRRLTPE-GNVFTVLQLSA--TQVSYQYYLALSPADGHLYISDAEKHQILRVLSLES 254 (770)
Q Consensus 181 ~P~~la~~~--dG~lyv~d-~~~I~~i~~~-G~v~~~~~~~~--~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~ 254 (770)
....|+.|. +|.|||+. .+.|.++++. +++..+..... ........|+.++ +|.|||+... +.+++++.
T Consensus 116 ~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lwigt~~-~Gl~~~~~--- 190 (781)
T 3v9f_A 116 DVTHITSSVQAGKGLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAE-DGKLYIGHVE-GGLSILSL--- 190 (781)
T ss_dssp CEEEEEECSSTTSEEEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEE-TTEEEEEETT-TEEEEEET---
T ss_pred cceEEEecCccCCCEEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECC-CCCEEEEecC-CCeEEEcC---
Confidence 457889999 99999998 5689999875 44444321100 0112346788884 8999998654 36888842
Q ss_pred ccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCCeEEECCC-CcEEEeecCCCCCC
Q psy4832 255 VADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTNIRVVSPE-GIIHTLIGHHKHHN 333 (770)
Q Consensus 255 ~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~Ir~id~~-G~i~t~~g~~~~~~ 333 (770)
..+.+..+.-.... . . ...-.....|..|++|+|||+....|.++++. +.+..+.......
T Consensus 191 ---~~~~~~~~~~~~~~-------~---~----~l~~~~i~~i~~d~~g~lwigt~~Gl~~~d~~~~~~~~~~~~~~~~- 252 (781)
T 3v9f_A 191 ---NDKSVKHFVHDPQN-------P---N----SLPGNDVRCIYKDTNGNIWIGTSKGLALFNANTETFTNFHNNPGNI- 252 (781)
T ss_dssp ---TTTEEEEECC----------------------CCSSEEEEEECTTCCEEEEETTEEEEEETTTTEEEC---------
T ss_pred ---CCCceEeeecCCCC-------c---c----cCCCCceeEEEEcCCCCEEEEeCCcHheECCCCCcEEEEEcCCCcc-
Confidence 12233332110000 0 0 00012356889999999999875458888865 4444332111000
Q ss_pred CcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC-CEEEEEcCCC-cEEEEecCCCCCC-CCCCCCcccccccccc
Q psy4832 334 IWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD-RVIFKLTNDL-KVKIVAGIPLHCR-TGDKDKRDFKDKQSKT 410 (770)
Q Consensus 334 ~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~-~~I~~i~~~G-~v~~vaG~~~~~~-~~~~~~~~~~~~~~~~ 410 (770)
....-.....|..|+ +|.|||+.. +-|.++++.. .+..+.-...... .....
T Consensus 253 -------------~~l~~~~i~~i~~d~-~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~----------- 307 (781)
T 3v9f_A 253 -------------HGALSSYIFSIKQLK-DNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNN----------- 307 (781)
T ss_dssp ----------------CCCCEEEEEECT-TSEEEEEESSSCEEEEETTCC---------CEEECBCSST-----------
T ss_pred -------------ccccCceEEEEEECC-CCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCC-----------
Confidence 000112456889998 999999875 7889998654 3322211000000 00000
Q ss_pred ccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCC-CcEEEeecCccCCCCCcCCCCCcccccCc
Q psy4832 411 KKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDST-GRMFDFAGRWQSDKKNCNTTNCAEFEKNS 489 (770)
Q Consensus 411 ~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~-G~i~~~aG~~~~~~~~~~~~~~~~~~~~~ 489 (770)
..-.-....+|..|++|+|||+-..+. |..+++. +.+..+.-.....
T Consensus 308 ------------~~l~~~~v~~i~~D~~g~lWigt~~~G----l~~~~~~~~~~~~~~~~~~~~---------------- 355 (781)
T 3v9f_A 308 ------------YSLSNASARYIFQDSFNNIWIGTWGGG----INFISNAPPTFHTWSYSPTQM---------------- 355 (781)
T ss_dssp ------------TSBSSSCEEEEEECSSCCEEEEEBSSC----EEEECSSCCSCEEEC----CC----------------
T ss_pred ------------CCCCCCeEEEEEEeCCCCEEEEecCCe----EEEeCCCCCcceeeccCcccc----------------
Confidence 000013468899999999999986554 5666653 3444432110000
Q ss_pred cCcccccceecCCeeEEEEcCCCcEEEEcCC
Q psy4832 490 KETLLTSTARFTSISALSVSPDGVVNVADQG 520 (770)
Q Consensus 490 ~d~~~~~~~~l~~P~giav~~dG~lyvaD~~ 520 (770)
.... -.-+...+|+.+++|.|||+..+
T Consensus 356 ~~~~----l~~~~v~~i~~d~~g~lWigt~~ 382 (781)
T 3v9f_A 356 NESS----LSNKVVSSVCDDGQGKLWIGTDG 382 (781)
T ss_dssp CSSC----CSSSCEEEEEECTTSCEEEEEBS
T ss_pred ccCC----CCCcceEEEEEcCCCCEEEEeCC
Confidence 0000 01134778999999999998643
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.21 E-value=3.4e-05 Score=87.00 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=36.1
Q ss_pred CC-CEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEE-e-CCCCcEEEEe
Q psy4832 190 DG-SLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLAL-S-PADGHLYISD 240 (770)
Q Consensus 190 dG-~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav-~-p~~g~lyvsd 240 (770)
|| .|||+|. ++|.+|+.+ .++..++.++. -..|.++++ . |..+.||++.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~ 154 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNG 154 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCC--CCCCcceeeeecCCCcEEEEec
Confidence 55 4899987 499999976 46566664332 346999998 4 7788999995
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0046 Score=64.24 Aligned_cols=220 Identities=15% Similarity=0.074 Sum_probs=122.7
Q ss_pred CceEEEEcCCCCEEE-EeC-ceEEEEcCCC-c--EEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCc
Q psy4832 181 TPVALTSGPDGSLYV-GDF-NLVRRLTPEG-N--VFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESV 255 (770)
Q Consensus 181 ~P~~la~~~dG~lyv-~d~-~~I~~i~~~G-~--v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~ 255 (770)
....+++.|+|.+++ +.. +.|+.++.+. + ....+ .........++++| ++.++++-..++.|..++.
T Consensus 99 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~---- 170 (337)
T 1gxr_A 99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL---TSSAPACYALAISP-DSKVCFSCCSDGNIAVWDL---- 170 (337)
T ss_dssp BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE---ECSSSCEEEEEECT-TSSEEEEEETTSCEEEEET----
T ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeec---ccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeC----
Confidence 467899999998554 443 5788887653 3 22222 11223457899998 5655555555667777742
Q ss_pred cCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEE-eCCC-eEEECCC-CcEEEeecCCCCC
Q psy4832 256 ADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIA-DGTN-IRVVSPE-GIIHTLIGHHKHH 332 (770)
Q Consensus 256 ~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYva-D~~~-Ir~id~~-G~i~t~~g~~~~~ 332 (770)
.++........ .-.....+++++++.++++ .... |+.+|.. +........
T Consensus 171 --~~~~~~~~~~~---------------------~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---- 223 (337)
T 1gxr_A 171 --HNQTLVRQFQG---------------------HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF---- 223 (337)
T ss_dssp --TTTEEEEEECC---------------------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC----
T ss_pred --CCCceeeeeec---------------------ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC----
Confidence 12222221110 0113568899988875544 4333 7777754 433332211
Q ss_pred CCcCCCccCCCcccccccccCcceEEEeCCCCeEE-EEe-CCEEEEEcCC-CcEEEEecCCCCCCCCCCCCccccccccc
Q psy4832 333 NIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLH-FID-DRVIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSK 409 (770)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~ly-v~D-~~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~ 409 (770)
-..+..++++| ++.++ ++. ++.|+.++.. ++...+.+
T Consensus 224 ------------------~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~~~~~~~~~--------------------- 263 (337)
T 1gxr_A 224 ------------------TSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLHL--------------------- 263 (337)
T ss_dssp ------------------SSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEEEECC---------------------
T ss_pred ------------------CCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCCeEEEcC---------------------
Confidence 11356789998 66644 444 5677777743 33322221
Q ss_pred cccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCcccccC
Q psy4832 410 TKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKN 488 (770)
Q Consensus 410 ~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~ 488 (770)
.-..+..++++++|.++++-...+. |+..+. +++.......
T Consensus 264 ----------------~~~~v~~~~~~~~~~~l~~~~~dg~---i~~~~~~~~~~~~~~~~------------------- 305 (337)
T 1gxr_A 264 ----------------HESCVLSLKFAYCGKWFVSTGKDNL---LNAWRTPYGASIFQSKE------------------- 305 (337)
T ss_dssp ----------------CSSCEEEEEECTTSSEEEEEETTSE---EEEEETTTCCEEEEEEC-------------------
T ss_pred ----------------CccceeEEEECCCCCEEEEecCCCc---EEEEECCCCeEEEEecC-------------------
Confidence 0123689999999997776665554 455553 3443222110
Q ss_pred ccCcccccceecCCeeEEEEcCCCcEEEEcCCCceE
Q psy4832 489 SKETLLTSTARFTSISALSVSPDGVVNVADQGSLHI 524 (770)
Q Consensus 489 ~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I 524 (770)
-..+.+++++|+|.++++-..++.|
T Consensus 306 -----------~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 306 -----------SSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp -----------SSCEEEEEECTTSCEEEEEETTSCE
T ss_pred -----------CCcEEEEEECCCCCEEEEecCCCeE
Confidence 1236789999999776654444443
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00056 Score=78.19 Aligned_cols=103 Identities=10% Similarity=0.039 Sum_probs=69.1
Q ss_pred EeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEE
Q psy4832 229 LSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFI 307 (770)
Q Consensus 229 v~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYv 307 (770)
.|| .+.+||+....+.|..|+. .++.+......|. .|++++++++|. +|+
T Consensus 163 ~d~-~~~~~V~~~~~~~V~viD~------~t~~v~~~i~~g~----------------------~p~~v~~SpDGr~lyv 213 (567)
T 1qks_A 163 WDL-ENLFSVTLRDAGQIALIDG------STYEIKTVLDTGY----------------------AVHISRLSASGRYLFV 213 (567)
T ss_dssp CCG-GGEEEEEETTTTEEEEEET------TTCCEEEEEECSS----------------------CEEEEEECTTSCEEEE
T ss_pred cCC-CceEEEEeCCCCeEEEEEC------CCCeEEEEEeCCC----------------------CccceEECCCCCEEEE
Confidence 444 5789999999999999953 2333332222211 478999999987 899
Q ss_pred EeCCC-eEEECC---CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEe----CCCC-eEEEEe--CCEEEE
Q psy4832 308 ADGTN-IRVVSP---EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS----PLDD-SLHFID--DRVIFK 376 (770)
Q Consensus 308 aD~~~-Ir~id~---~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d----~~~g-~lyv~D--~~~I~~ 376 (770)
+...+ |.++|. .+++..-+..+ ..|.+|+++ | +| .|||++ .+.|..
T Consensus 214 ~~~dg~V~viD~~~~t~~~v~~i~~G----------------------~~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~V 270 (567)
T 1qks_A 214 IGRDGKVNMIDLWMKEPTTVAEIKIG----------------------SEARSIETSKMEGW-EDKYAIAGAYWPPQYVI 270 (567)
T ss_dssp EETTSEEEEEETTSSSCCEEEEEECC----------------------SEEEEEEECCSTTC-TTTEEEEEEEETTEEEE
T ss_pred EcCCCeEEEEECCCCCCcEeEEEecC----------------------CCCceeEEccccCC-CCCEEEEEEccCCeEEE
Confidence 87655 999987 44443222111 148899999 6 55 689987 688888
Q ss_pred EcC-CCcE
Q psy4832 377 LTN-DLKV 383 (770)
Q Consensus 377 i~~-~G~v 383 (770)
+|. +.++
T Consensus 271 iD~~t~~~ 278 (567)
T 1qks_A 271 MDGETLEP 278 (567)
T ss_dssp EETTTCCE
T ss_pred EECCCCcE
Confidence 884 3443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00028 Score=74.56 Aligned_cols=149 Identities=13% Similarity=0.159 Sum_probs=86.2
Q ss_pred cCCCCEEEEeC--ceEEEEcCCCcEEEEeccCcccccceeEEEEeCC---CC----cEEEEeCC--CcEEEEEeccCCcc
Q psy4832 188 GPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPA---DG----HLYISDAE--KHQILRVLSLESVA 256 (770)
Q Consensus 188 ~~dG~lyv~d~--~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~---~g----~lyvsd~~--~~~I~~i~~~~~~~ 256 (770)
+|..+++++-. ..+..++.+|+....+.. ..++++.+-|. +| .+|+++.. +++|..+..
T Consensus 37 dp~~s~ii~t~k~~gL~Vydl~G~~l~~~~~-----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i----- 106 (355)
T 3amr_A 37 TPQNSKLITTNKKSGLVVYSLDGKMLHSYNT-----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI----- 106 (355)
T ss_dssp CGGGCEEEEEETTTEEEEEETTSCEEEEECC-----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE-----
T ss_pred CCCccEEEEEcCCCCEEEEcCCCcEEEEccC-----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE-----
Confidence 55666666442 478888888888876631 33556555441 11 46899998 888876643
Q ss_pred CCC-CcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEE--cc-CCc--EEEEeCCC-eEE--E-C-CCCcEEE-
Q psy4832 257 DPS-INWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI--KA-DKT--MFIADGTN-IRV--V-S-PEGIIHT- 324 (770)
Q Consensus 257 ~~~-g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIav--d~-~G~--lYvaD~~~-Ir~--i-d-~~G~i~t- 324 (770)
+++ +.+..+.. .. ......+..|.||++ ++ .|. +|+.+... +.. + + .+|.++.
T Consensus 107 Dp~~~~l~~i~~-~~--------------~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~ 171 (355)
T 3amr_A 107 DGKNGTLQSMTD-PD--------------HPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGK 171 (355)
T ss_dssp CTTTCCEEECSC-TT--------------SCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEE
T ss_pred CCCCCceeeccc-cc--------------cCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccce
Confidence 322 23333211 00 001123568999999 66 454 66666544 332 2 2 3443321
Q ss_pred eecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe-CCEEEEEcCC
Q psy4832 325 LIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID-DRVIFKLTND 380 (770)
Q Consensus 325 ~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D-~~~I~~i~~~ 380 (770)
++..-.. -..|.++++|+..+.|||++ +..|++++.+
T Consensus 172 lVR~f~l-------------------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 172 KVRAFKM-------------------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp EEEEEEC-------------------SSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred EEEEecC-------------------CCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence 1111000 01588999998789999999 5679999943
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0024 Score=68.50 Aligned_cols=104 Identities=12% Similarity=0.115 Sum_probs=64.7
Q ss_pred CEEEEeC-------ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeC---------CCcEEEEEeccCC
Q psy4832 192 SLYVGDF-------NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDA---------EKHQILRVLSLES 254 (770)
Q Consensus 192 ~lyv~d~-------~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~---------~~~~I~~i~~~~~ 254 (770)
.+||++. +.|.++|. +|++...+.. -..| +|+++|....||+++. ..+.|..++..
T Consensus 17 ~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~----g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~-- 89 (361)
T 2oiz_A 17 RIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPT----AFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD-- 89 (361)
T ss_dssp EEEEEECCGGGGGGCEEEEEETTTCCEEEEEEC----CEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT--
T ss_pred EEEEECCCCCccccCeEEEEECCCCeEEEEecC----CCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc--
Confidence 5788774 37888884 5776655432 1458 9999997778999974 23568888521
Q ss_pred ccCCCCcE-EEEE-CCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCC--C-eEEECCC-CcEE
Q psy4832 255 VADPSINW-EVAV-GSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGT--N-IRVVSPE-GIIH 323 (770)
Q Consensus 255 ~~~~~g~~-~~va-G~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~--~-Ir~id~~-G~i~ 323 (770)
++.. ..+. +.+. ...-..|.+|+++++|. ||++... + |.++|.+ +++.
T Consensus 90 ----t~~~~~~i~~~~~~-----------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~ 144 (361)
T 2oiz_A 90 ----KLTFEKEISLPPKR-----------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYV 144 (361)
T ss_dssp ----TCCEEEEEEECTTB-----------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEE
T ss_pred ----CCcEEEEEEcCccc-----------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEE
Confidence 2222 2221 1100 00123699999999986 9998743 3 8888854 4443
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.13 E-value=0.013 Score=60.85 Aligned_cols=225 Identities=14% Similarity=0.066 Sum_probs=123.5
Q ss_pred CceEEEEcCCCCEEEEeC-ceEEEEcCC-CcE---EEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCc
Q psy4832 181 TPVALTSGPDGSLYVGDF-NLVRRLTPE-GNV---FTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESV 255 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~-~~I~~i~~~-G~v---~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~ 255 (770)
...++++.|+|.++++-. +.|+.++.+ +.. ...+.. ...-.....++++| ++.++++-..++.|..++..
T Consensus 53 ~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~--- 127 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDC-LNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLA--- 127 (337)
T ss_dssp CCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEEC-SCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECC---
T ss_pred ceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccc-cCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECC---
Confidence 356788999998666544 567777643 211 111110 12234467899998 66655555556777777431
Q ss_pred cCCCCc--E-EEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEE-EEeCCC-eEEECCC-CcEEEeecCC
Q psy4832 256 ADPSIN--W-EVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMF-IADGTN-IRVVSPE-GIIHTLIGHH 329 (770)
Q Consensus 256 ~~~~g~--~-~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lY-vaD~~~-Ir~id~~-G~i~t~~g~~ 329 (770)
++. . ..+.+. -.....+++.+++.++ ++.... |+..+.. +.....+...
T Consensus 128 ---~~~~~~~~~~~~~----------------------~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~ 182 (337)
T 1gxr_A 128 ---APTPRIKAELTSS----------------------APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 182 (337)
T ss_dssp ---CC--EEEEEEECS----------------------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred ---CCCcceeeecccC----------------------CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecc
Confidence 122 1 111110 1134678888888744 444433 8777753 4333222111
Q ss_pred CCCCCcCCCccCCCcccccccccCcceEEEeCCCCeE-EEEe-CCEEEEEcCC-CcEEEEecCCCCCCCCCCCCcccccc
Q psy4832 330 KHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSL-HFID-DRVIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDK 406 (770)
Q Consensus 330 ~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~l-yv~D-~~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~ 406 (770)
-.....++++| ++.+ +++. ++.|+.++.. ++.......
T Consensus 183 ---------------------~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~----------------- 223 (337)
T 1gxr_A 183 ---------------------TDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDF----------------- 223 (337)
T ss_dssp ---------------------SSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEEC-----------------
T ss_pred ---------------------cCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeecC-----------------
Confidence 12366899999 6654 4444 5778888743 433222210
Q ss_pred ccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCccc
Q psy4832 407 QSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEF 485 (770)
Q Consensus 407 ~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~ 485 (770)
-..+..++++|+|.++++-...+. |+.++. +++...+.+.
T Consensus 224 --------------------~~~v~~~~~s~~~~~l~~~~~~~~---i~~~~~~~~~~~~~~~~---------------- 264 (337)
T 1gxr_A 224 --------------------TSQIFSLGYCPTGEWLAVGMESSN---VEVLHVNKPDKYQLHLH---------------- 264 (337)
T ss_dssp --------------------SSCEEEEEECTTSSEEEEEETTSC---EEEEETTSSCEEEECCC----------------
T ss_pred --------------------CCceEEEEECCCCCEEEEEcCCCc---EEEEECCCCCeEEEcCC----------------
Confidence 123688999999986666555544 555554 3333322211
Q ss_pred ccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEee
Q psy4832 486 EKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILAL 527 (770)
Q Consensus 486 ~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i 527 (770)
-..+.+++++|+|.++++-..++.|+..
T Consensus 265 --------------~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 292 (337)
T 1gxr_A 265 --------------ESCVLSLKFAYCGKWFVSTGKDNLLNAW 292 (337)
T ss_dssp --------------SSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred --------------ccceeEEEECCCCCEEEEecCCCcEEEE
Confidence 1236789999999877665555555444
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0033 Score=66.04 Aligned_cols=219 Identities=17% Similarity=0.170 Sum_probs=125.8
Q ss_pred ceEEEEcCCCCEEEEeC--ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC
Q psy4832 182 PVALTSGPDGSLYVGDF--NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP 258 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~--~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~ 258 (770)
-.++++.+++.+.++-. +.|+.++. +|+....+.. .......++++| ++..+++-...+.|..++..
T Consensus 83 v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~---~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~------ 152 (321)
T 3ow8_A 83 VVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA---GPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVE------ 152 (321)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC---CTTCCCCEEECT-TSSEEEEECTTSEEEEEETT------
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeC---CCccEEEEEECC-CCCEEEEEcCCCcEEEEEcC------
Confidence 35677778877666543 47777774 4555544421 223356799998 77777777777888777531
Q ss_pred CCcEE-EEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEe-CCC-eEEECC-CCcEE-EeecCCCCCC
Q psy4832 259 SINWE-VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIAD-GTN-IRVVSP-EGIIH-TLIGHHKHHN 333 (770)
Q Consensus 259 ~g~~~-~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD-~~~-Ir~id~-~G~i~-t~~g~~~~~~ 333 (770)
++... .+.+.+ .....+++.++|.+.++- ... |+..|. .++.. ++-+..
T Consensus 153 ~~~~~~~~~~~~----------------------~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~---- 206 (321)
T 3ow8_A 153 SGKKEYSLDTRG----------------------KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA---- 206 (321)
T ss_dssp TCSEEEEEECSS----------------------SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS----
T ss_pred CCceeEEecCCC----------------------ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccC----
Confidence 22221 222111 124578999998865553 333 888774 35433 332211
Q ss_pred CcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcC-CCcE-EEEecCCCCCCCCCCCCccccccccc
Q psy4832 334 IWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTN-DLKV-KIVAGIPLHCRTGDKDKRDFKDKQSK 409 (770)
Q Consensus 334 ~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~-~G~v-~~vaG~~~~~~~~~~~~~~~~~~~~~ 409 (770)
.....|+++| ++.++++- .+.|+..+. .+.. ..+.+.
T Consensus 207 ------------------~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-------------------- 247 (321)
T 3ow8_A 207 ------------------MPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGH-------------------- 247 (321)
T ss_dssp ------------------SCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCC--------------------
T ss_pred ------------------CceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCC--------------------
Confidence 1246899999 77766654 456766663 3332 222211
Q ss_pred cccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCc-EEEeecCccCCCCCcCCCCCccccc
Q psy4832 410 TKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGR-MFDFAGRWQSDKKNCNTTNCAEFEK 487 (770)
Q Consensus 410 ~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~-i~~~aG~~~~~~~~~~~~~~~~~~~ 487 (770)
-.....++++|+|.++++-...+. |+..+. +++ +.++.+..
T Consensus 248 -----------------~~~v~~~~~sp~~~~l~s~s~D~~---v~iwd~~~~~~~~~~~~h~----------------- 290 (321)
T 3ow8_A 248 -----------------ASWVLNVAFCPDDTHFVSSSSDKS---VKVWDVGTRTCVHTFFDHQ----------------- 290 (321)
T ss_dssp -----------------SSCEEEEEECTTSSEEEEEETTSC---EEEEETTTTEEEEEECCCS-----------------
T ss_pred -----------------CCceEEEEECCCCCEEEEEeCCCc---EEEEeCCCCEEEEEEcCCC-----------------
Confidence 123688999999987776665554 455553 343 22232111
Q ss_pred CccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEE
Q psy4832 488 NSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHIL 525 (770)
Q Consensus 488 ~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~ 525 (770)
....+|+++|+|..+++-...+.|+
T Consensus 291 -------------~~v~~v~~s~~g~~l~s~~~d~~i~ 315 (321)
T 3ow8_A 291 -------------DQVWGVKYNGNGSKIVSVGDDQEIH 315 (321)
T ss_dssp -------------SCEEEEEECTTSSEEEEEETTCCEE
T ss_pred -------------CcEEEEEECCCCCEEEEEeCCCeEE
Confidence 2367899999998777654444444
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0035 Score=68.41 Aligned_cols=213 Identities=10% Similarity=-0.038 Sum_probs=118.4
Q ss_pred CCCCcEEEEeCCCcEEEEEeccCCccCCCC-cEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEe
Q psy4832 231 PADGHLYISDAEKHQILRVLSLESVADPSI-NWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIAD 309 (770)
Q Consensus 231 p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g-~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD 309 (770)
+....||++.-.+++|+.|+.... |.. .+..+... +. ......+..|+++.+.++| |||+.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~---p~~p~~~k~ie~-~~-------------~~~~~g~s~Ph~~~~~pdG-i~Vs~ 154 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPN---PREPKIIKVIEP-EE-------------VKKVSGYSRLHTVHCGPDA-IYISA 154 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSC---TTSCEEEEEECH-HH-------------HHHHHCEEEEEEEEECSSC-EEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCC---CCCceeeeeech-hh-------------cccccCCCcccceeECCCe-EEEEc
Confidence 456789999999999999964321 111 11111100 00 0001124479999999999 99975
Q ss_pred CCC--------eEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe---------
Q psy4832 310 GTN--------IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID--------- 370 (770)
Q Consensus 310 ~~~--------Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D--------- 370 (770)
.++ |..+|.. +++..-+..+.. .-..+.++.+.| +++ +|+++
T Consensus 155 ~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~------------------~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~ 215 (462)
T 2ece_A 155 LGNEEGEGPGGILMLDHYSFEPLGKWEIDRG------------------DQYLAYDFWWNL-PNEVLVSSEWAVPNTIED 215 (462)
T ss_dssp EEETTSCSCCEEEEECTTTCCEEEECCSBCT------------------TCCCCCCEEEET-TTTEEEECBCCCHHHHTT
T ss_pred CCCcCCCCCCeEEEEECCCCeEEEEEccCCC------------------CccccceEEECC-CCCEEEEccCcCcccccc
Confidence 332 8889965 666554432210 012356788898 655 55564
Q ss_pred -----------CCEEEEEcCC-CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEE--c
Q psy4832 371 -----------DRVIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAF--S 436 (770)
Q Consensus 371 -----------~~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giav--d 436 (770)
.++|..++.+ +++....-.+.. =..|..|.+ +
T Consensus 216 g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~----------------------------------g~~P~~i~f~~~ 261 (462)
T 2ece_A 216 GLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE----------------------------------NRMALELRPLHD 261 (462)
T ss_dssp CCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT----------------------------------EEEEEEEEECSS
T ss_pred ccchhhhhhccCCEEEEEECCCCcEeeEEecCCC----------------------------------CCccceeEeeEC
Confidence 4788888854 432211110000 023788877 8
Q ss_pred CCCC-EEEEeC-----CCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCccc---cc-ceecCCeeEE
Q psy4832 437 PTGD-LYIADI-----DARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLL---TS-TARFTSISAL 506 (770)
Q Consensus 437 ~~G~-lyVaD~-----~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~---~~-~~~l~~P~gi 506 (770)
|+|. +||+.. .+..|..++. + +|.+....--...... ...... .. .+.-..|.+|
T Consensus 262 Pdg~~aYV~~e~~~~~Lss~V~v~~~-d-~g~~~~~~vIdi~~~~-------------v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 262 PTKLMGFINMVVSLKDLSSSIWLWFY-E-DGKWNAEKVIEIPAEP-------------LEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp TTCCEEEEEEEEETTTCCEEEEEEEE-E-TTEEEEEEEEEECCEE-------------CCSSCCGGGGGGTEECCCCCCE
T ss_pred CCCCEEEEEEeeeccCCCceEEEEEe-c-CCceeEEEEEeCCCcc-------------ccccccccccccccCCCceeEE
Confidence 9887 898887 6665544433 2 2543221100000000 000000 00 0012469999
Q ss_pred EEcCCC-cEEEEcCCCceEEeeec
Q psy4832 507 SVSPDG-VVNVADQGSLHILALQH 529 (770)
Q Consensus 507 av~~dG-~lyvaD~~~~~I~~i~~ 529 (770)
.+++|| .|||++.+.+.|..+..
T Consensus 327 ~lS~DGrfLYVSnrg~d~VavfdV 350 (462)
T 2ece_A 327 DISLDDKFLYLSLWGIGEVRQYDI 350 (462)
T ss_dssp EECTTSCEEEEEETTTTEEEEEEC
T ss_pred EECCCCCEEEEEeCCCCEEEEEEe
Confidence 999999 58999999999888764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00062 Score=74.30 Aligned_cols=206 Identities=13% Similarity=0.018 Sum_probs=112.4
Q ss_pred CCCccEEecccCCCeEEEEeccCccCCcc---CCCCCcccccccccCceEEEEcCCCCEEEEeC--------ceEEEEcC
Q psy4832 138 GDGSSLHLKHEFPRTVSVVMGTGLQRPLV---CKDCDGVARDARLLTPVALTSGPDGSLYVGDF--------NLVRRLTP 206 (770)
Q Consensus 138 ~dG~~~~~~~~~~~~i~~v~g~G~~~~~~---~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~--------~~I~~i~~ 206 (770)
.++..+|+....+..|.++.-.-..+... .....-......+..|..+.+.|+| |||+.. +.|..+|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 45556666655566666665321111000 0000000112235589999999999 999654 37999996
Q ss_pred C-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCC------------------CcEEEEEeccCCccCCCCcEEEEEC
Q psy4832 207 E-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAE------------------KHQILRVLSLESVADPSINWEVAVG 267 (770)
Q Consensus 207 ~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~------------------~~~I~~i~~~~~~~~~~g~~~~vaG 267 (770)
. +++...+..+......++++.++|..+.+|+++++ .++|..++.. ++.+....-
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~------~~k~~~tI~ 245 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR------KRKRIHSLT 245 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT------TTEEEEEEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC------CCcEeeEEe
Confidence 6 78887775443334557788899866677777643 6888888532 222211111
Q ss_pred CCccccCCCCCCcCCCcccccccccCcceEEE--ccCCc-EEEEeC-----C--CeEEECC-CCcEEEe--e--cCCCCC
Q psy4832 268 SGERCIPGDETNCGDNGPALAAKLSHPKGLAI--KADKT-MFIADG-----T--NIRVVSP-EGIIHTL--I--GHHKHH 332 (770)
Q Consensus 268 ~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIav--d~~G~-lYvaD~-----~--~Ir~id~-~G~i~t~--~--g~~~~~ 332 (770)
.|. . =..|..|++ +++|. +||+.. . +|..+.. +|..... + .....
T Consensus 246 vg~-----------~--------g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v- 305 (462)
T 2ece_A 246 LGE-----------E--------NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPL- 305 (462)
T ss_dssp SCT-----------T--------EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEEC-
T ss_pred cCC-----------C--------CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccc-
Confidence 110 0 014778877 88886 888754 2 2544322 2432211 1 11000
Q ss_pred CCcCCCccCCCcccccc---c-ccCcceEEEeCCCC-eEEEEe--CCEEEEEcC
Q psy4832 333 NIWSPFNCHRSFPASTA---Q-LQWPTGLALSPLDD-SLHFID--DRVIFKLTN 379 (770)
Q Consensus 333 ~~~~p~~~~~~~~~~~~---~-l~~P~gla~d~~~g-~lyv~D--~~~I~~i~~ 379 (770)
....+.... . -..|.+|.+++ +| .|||++ .+.|..++-
T Consensus 306 --------~~~lp~~~~~f~~~~~~pa~I~lS~-DGrfLYVSnrg~d~VavfdV 350 (462)
T 2ece_A 306 --------EGNLPEILKPFKAVPPLVTDIDISL-DDKFLYLSLWGIGEVRQYDI 350 (462)
T ss_dssp --------CSSCCGGGGGGTEECCCCCCEEECT-TSCEEEEEETTTTEEEEEEC
T ss_pred --------cccccccccccccCCCceeEEEECC-CCCEEEEEeCCCCEEEEEEe
Confidence 000000000 0 24699999999 65 599999 577877773
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=0.065 Score=66.97 Aligned_cols=67 Identities=9% Similarity=0.010 Sum_probs=45.1
Q ss_pred cCceEEEEcCCCCEEEEe-C-ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 180 LTPVALTSGPDGSLYVGD-F-NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 180 ~~P~~la~~~dG~lyv~d-~-~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
....++++.|+|.++++- . +.|+.++. +++....+. ..-.....++++| ++.+.++-..++.|..++
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~---~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK---AHEDEVLCCAFSS-DDSYIATCSADKKVKIWD 685 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec---cCCCCEEEEEEec-CCCEEEEEeCCCeEEEEE
Confidence 345788999999877653 3 57888774 466554442 2234567899998 666666666677887775
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.022 Score=61.11 Aligned_cols=164 Identities=15% Similarity=0.104 Sum_probs=79.5
Q ss_pred cCceEEEEcCCCC-EEE-EeC-ceEEEEcC-----CCc------EEEEeccCcc-------cccceeEEEEeCCCCcEEE
Q psy4832 180 LTPVALTSGPDGS-LYV-GDF-NLVRRLTP-----EGN------VFTVLQLSAT-------QVSYQYYLALSPADGHLYI 238 (770)
Q Consensus 180 ~~P~~la~~~dG~-lyv-~d~-~~I~~i~~-----~G~------v~~~~~~~~~-------~~~~p~~lav~p~~g~lyv 238 (770)
....++++.|+|. +++ +.. +.|+.++. +|+ ....+..... .-.....++++| ++.+++
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~ 124 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH-DGNSIV 124 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT-TSSEEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC-CCCEEE
Confidence 3457899999998 555 444 45665554 344 2222221100 122567899998 666666
Q ss_pred EeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC-eEEE
Q psy4832 239 SDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN-IRVV 316 (770)
Q Consensus 239 sd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~-Ir~i 316 (770)
+-..++.|..++ .++........ .-.....|++.+++. |+.+.... |+..
T Consensus 125 ~~~~dg~i~i~~-------~~~~~~~~~~~---------------------~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 125 TGVENGELRLWN-------KTGALLNVLNF---------------------HRAPIVSVKWNKDGTHIISMDVENVTILW 176 (425)
T ss_dssp EEETTSCEEEEE-------TTSCEEEEECC---------------------CCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred EEeCCCeEEEEe-------CCCCeeeeccC---------------------CCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence 655567777773 33433222210 011356888888887 44444433 7777
Q ss_pred CC-CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe-CCEEEEEcC
Q psy4832 317 SP-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID-DRVIFKLTN 379 (770)
Q Consensus 317 d~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D-~~~I~~i~~ 379 (770)
+. .+.....+........ ...+ ......-.....+++.+ ++.++++. ++.|+.++.
T Consensus 177 d~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~i~~~d~ 234 (425)
T 1r5m_A 177 NVISGTVMQHFELKETGGS--SINA----ENHSGDGSLGVDVEWVD-DDKFVIPGPKGAIFVYQI 234 (425)
T ss_dssp ETTTTEEEEEECCC---------------------CCCBSCCEEEE-TTEEEEECGGGCEEEEET
T ss_pred ECCCCcEEEEeeccccCcc--ceee----ccccCCcceeeEEEEcC-CCEEEEEcCCCeEEEEEc
Confidence 74 3443332221110000 0000 00000011256778887 77666655 456666663
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0002 Score=77.13 Aligned_cols=103 Identities=3% Similarity=-0.175 Sum_probs=67.5
Q ss_pred CCEEEEeC--c----eEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeC---------CCcEEEEEeccCC
Q psy4832 191 GSLYVGDF--N----LVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDA---------EKHQILRVLSLES 254 (770)
Q Consensus 191 G~lyv~d~--~----~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~---------~~~~I~~i~~~~~ 254 (770)
..+||++. + .|..||.+ +++...+..+ ..| +++++|....|||++. ..+.|..|+..
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG----~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~-- 104 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGA----FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV-- 104 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC----TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT--
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEEeCC----CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC--
Confidence 56888876 3 78899865 6776655432 248 9999998889999984 35789999532
Q ss_pred ccCCCCcE-EEE-ECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCC--C-eEE--ECCCC
Q psy4832 255 VADPSINW-EVA-VGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGT--N-IRV--VSPEG 320 (770)
Q Consensus 255 ~~~~~g~~-~~v-aG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~--~-Ir~--id~~G 320 (770)
++.+ ..+ .+.+.+ ......|.+|+++++|. |||+... + |.+ +|..-
T Consensus 105 ----T~~vv~~I~v~~~~~----------------~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 105 ----TFLPIADIELPDAPR----------------FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp ----TCCEEEEEEETTSCS----------------CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred ----CCCEEEEEECCCccc----------------cccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 2232 222 221100 01124699999999985 9999743 3 777 88644
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=7.4e-05 Score=83.38 Aligned_cols=131 Identities=23% Similarity=0.378 Sum_probs=83.5
Q ss_pred cccccceeEEEEeCCCCcEEEEeCCC---------------------cEEEEEeccCCccCCC---CcEEEEECCCcccc
Q psy4832 218 ATQVSYQYYLALSPADGHLYISDAEK---------------------HQILRVLSLESVADPS---INWEVAVGSGERCI 273 (770)
Q Consensus 218 ~~~~~~p~~lav~p~~g~lyvsd~~~---------------------~~I~~i~~~~~~~~~~---g~~~~vaG~g~~~~ 273 (770)
++.+..|.+++++|.++.||++-+++ ++|+++....+ ++. ..+++++-.|..-.
T Consensus 380 AT~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~--d~~a~~f~W~i~l~~G~p~~ 457 (592)
T 4a9v_A 380 ATRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRD--DHASKTFAWDLFVVAGNPSV 457 (592)
T ss_dssp CCCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGG--CTTCSEEEEEEEEECCCTTT
T ss_pred CccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCC--CcccceeeEEEEEEccCCcc
Confidence 56778899999999999999997653 67888864322 221 12444332111100
Q ss_pred CCCCCCcCCCcccccccccCcceEEEccCCcEEE-EeCC-------------CeEEECC-CCcEEEeecCCCCCCCcCCC
Q psy4832 274 PGDETNCGDNGPALAAKLSHPKGLAIKADKTMFI-ADGT-------------NIRVVSP-EGIIHTLIGHHKHHNIWSPF 338 (770)
Q Consensus 274 p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYv-aD~~-------------~Ir~id~-~G~i~t~~g~~~~~~~~~p~ 338 (770)
.....+.|.........|+.|.+|+||++|.||| +|.. .++.+++ .|.+..++...
T Consensus 458 ~~~~~~~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P--------- 528 (592)
T 4a9v_A 458 HAGTPKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP--------- 528 (592)
T ss_dssp STTSGGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC---------
T ss_pred cccccccCccCccccCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC---------
Confidence 0000011222223345799999999999999999 7753 2788887 58888776321
Q ss_pred ccCCCcccccccccCcceEEEeCCCCeEEEEe
Q psy4832 339 NCHRSFPASTAQLQWPTGLALSPLDDSLHFID 370 (770)
Q Consensus 339 ~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D 370 (770)
.+..|+||+++|....|||+-
T Consensus 529 -----------~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 529 -----------IGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp -----------TTCEEEEEEECTTSSEEEEEE
T ss_pred -----------CCccccCCEECCCCCEEEEEE
Confidence 134699999999334588874
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.027 Score=59.00 Aligned_cols=181 Identities=15% Similarity=0.135 Sum_probs=102.1
Q ss_pred ceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcE-EEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc
Q psy4832 223 YQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINW-EVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA 301 (770)
Q Consensus 223 ~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~-~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~ 301 (770)
.-..+++++ ++.+.++-..++.|+.++. .++.. ..+.+. -.....+++.+
T Consensus 82 ~v~~~~~~~-~~~~l~s~s~D~~i~lWd~------~~~~~~~~~~~~----------------------~~~~~~~~~sp 132 (321)
T 3ow8_A 82 GVVSVDISH-TLPIAASSSLDAHIRLWDL------ENGKQIKSIDAG----------------------PVDAWTLAFSP 132 (321)
T ss_dssp CEEEEEECS-SSSEEEEEETTSEEEEEET------TTTEEEEEEECC----------------------TTCCCCEEECT
T ss_pred CEEEEEECC-CCCEEEEEeCCCcEEEEEC------CCCCEEEEEeCC----------------------CccEEEEEECC
Confidence 456788886 6777777777778877753 22322 222111 01245788999
Q ss_pred CCcEEEEeCCC--eEEECCC-Cc-EEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEE
Q psy4832 302 DKTMFIADGTN--IRVVSPE-GI-IHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIF 375 (770)
Q Consensus 302 ~G~lYvaD~~~--Ir~id~~-G~-i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~ 375 (770)
+|.++++-... |+.++.. +. ..++.+.. .....++++| +++++++- ++.|+
T Consensus 133 dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~----------------------~~v~~~~~sp-dg~~lasg~~dg~i~ 189 (321)
T 3ow8_A 133 DSQYLATGTHVGKVNIFGVESGKKEYSLDTRG----------------------KFILSIAYSP-DGKYLASGAIDGIIN 189 (321)
T ss_dssp TSSEEEEECTTSEEEEEETTTCSEEEEEECSS----------------------SCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred CCCEEEEEcCCCcEEEEEcCCCceeEEecCCC----------------------ceEEEEEECC-CCCEEEEEcCCCeEE
Confidence 98866654433 6666633 32 22222111 1356799999 77755543 56777
Q ss_pred EEcC-CCcEE-EEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceee
Q psy4832 376 KLTN-DLKVK-IVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNA 453 (770)
Q Consensus 376 ~i~~-~G~v~-~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~ 453 (770)
.++. +++.. .+.+. -.....|+++|+|.++++-...+.
T Consensus 190 iwd~~~~~~~~~~~~h-------------------------------------~~~v~~l~~spd~~~l~s~s~dg~--- 229 (321)
T 3ow8_A 190 IFDIATGKLLHTLEGH-------------------------------------AMPIRSLTFSPDSQLLVTASDDGY--- 229 (321)
T ss_dssp EEETTTTEEEEEECCC-------------------------------------SSCCCEEEECTTSCEEEEECTTSC---
T ss_pred EEECCCCcEEEEEccc-------------------------------------CCceeEEEEcCCCCEEEEEcCCCe---
Confidence 7773 44432 22211 012478999999997777666554
Q ss_pred EEEEcC-CCcE-EEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEE
Q psy4832 454 LRVIDS-TGRM-FDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHIL 525 (770)
Q Consensus 454 i~~i~~-~G~i-~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~ 525 (770)
|+..+. .+.. .++.+. -.....++++|+|..+++-...+.|+
T Consensus 230 i~iwd~~~~~~~~~~~~h------------------------------~~~v~~~~~sp~~~~l~s~s~D~~v~ 273 (321)
T 3ow8_A 230 IKIYDVQHANLAGTLSGH------------------------------ASWVLNVAFCPDDTHFVSSSSDKSVK 273 (321)
T ss_dssp EEEEETTTCCEEEEECCC------------------------------SSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEEECCCcceeEEEcCC------------------------------CCceEEEEECCCCCEEEEEeCCCcEE
Confidence 555553 3332 222211 12366799999988766644444443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00074 Score=76.22 Aligned_cols=220 Identities=15% Similarity=0.135 Sum_probs=121.2
Q ss_pred eeecCCCeEEECCCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEE-c-CCCC-EEEEeC-----
Q psy4832 127 HYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTS-G-PDGS-LYVGDF----- 198 (770)
Q Consensus 127 ~~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~-~-~dG~-lyv~d~----- 198 (770)
++...+|. .||..+|+.+..+.+|.+|.-.-.. | ...-.--.-..|.++++ . |++. ||++..
T Consensus 91 ~~s~t~g~---~DG~~lfVnd~~~~rVavIdl~t~~----~---~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~ 160 (595)
T 1fwx_A 91 HMSFTEGK---YDGRFLFMNDKANTRVARVRCDVMK----C---DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPL 160 (595)
T ss_dssp EEEEETTE---EEEEEEEEEETTTTEEEEEETTTTE----E---EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEES
T ss_pred ccCCCCCC---cCCCEEEEEcCCCCEEEEEECCCce----E---eeEEeCCCCCCCcceeeeecCCCcEEEEeccccccc
Confidence 45555554 5888999999777888888743211 1 11000001136899998 4 7654 787731
Q ss_pred --------------ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCC--------------cEEEEE
Q psy4832 199 --------------NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEK--------------HQILRV 249 (770)
Q Consensus 199 --------------~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~--------------~~I~~i 249 (770)
+.+..||.+ .++...+.. .+ .|.+++++|.++.+|++..+. ..|..+
T Consensus 161 ~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~V--gg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~ 236 (595)
T 1fwx_A 161 VNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV--SG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVF 236 (595)
T ss_dssp SCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEE--SS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEE
T ss_pred CCCCcccccccccCceEEEEECCCCeEEEEEEe--CC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEe
Confidence 367888866 344443322 12 699999999888899998776 334444
Q ss_pred eccCC-ccCCCC------cEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEECCC
Q psy4832 250 LSLES-VADPSI------NWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVSPE 319 (770)
Q Consensus 250 ~~~~~-~~~~~g------~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id~~ 319 (770)
+.... ...++| .+.++-+.... +.--.+.-..-..|+||.++|||. +|+++... |.++|.+
T Consensus 237 ~~~~~~~~v~~Gk~~~i~~V~VID~~~~~---------~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~ 307 (595)
T 1fwx_A 237 NIAEIEKAIAAGDYQELNGVKVVDGRKEA---------SSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT 307 (595)
T ss_dssp EHHHHHHHHHHTCSEEETTEEEEECSGGG---------CCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred eccceeEeccCCCeeEECcEEEEeCcccC---------CceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECc
Confidence 32110 001122 23333321100 000000111124799999999997 88988654 7777754
Q ss_pred CcEEEeecCCCCCCCcCCCccCCCcccccccc-cCcceEEEeCCCCeEEEEe--CCEEEEEcCC
Q psy4832 320 GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQL-QWPTGLALSPLDDSLHFID--DRVIFKLTND 380 (770)
Q Consensus 320 G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l-~~P~gla~d~~~g~lyv~D--~~~I~~i~~~ 380 (770)
-.-..+.|.-. |..+ ...+..+ ..|..++|++ +|++|++. ++.|.+++.+
T Consensus 308 ~~~~~~~~~l~------~~~~----v~~~v~vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 308 RFDAVFYENAD------PRSA----VVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp GHHHHHHSCCC------GGGG----EEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEEEEHH
T ss_pred ccccccccccC------cccc----eEEEcCCCCCcceEEECC-CCeEEEEEecCCcEEEEEhh
Confidence 21000000000 0000 0000011 2599999999 88999998 6888888743
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.034 Score=58.51 Aligned_cols=226 Identities=16% Similarity=0.172 Sum_probs=127.7
Q ss_pred CceEEEEcCCCCEEEEeC--ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 181 TPVALTSGPDGSLYVGDF--NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~--~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
.-.++++.|+|.++++-. +.|+.++. +++....+.. .-.....++++| ++.+.++-..++.|..++...
T Consensus 57 ~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~---~~~~v~~~~~s~-~~~~l~s~~~d~~v~iw~~~~---- 128 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL---RSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKT---- 128 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC---SSSCEEEEEECT-TSSEEEEEETTCEEEEEETTT----
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec---CCccEEEEEECC-CCCEEEEEeCCCeEEEEECcc----
Confidence 346788999998776543 47887774 4555544422 223457899998 666666666667776664321
Q ss_pred CCCcEE---EEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECC-CCcE-EEeecCCCC
Q psy4832 258 PSINWE---VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSP-EGII-HTLIGHHKH 331 (770)
Q Consensus 258 ~~g~~~---~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~-~G~i-~t~~g~~~~ 331 (770)
..+... .+.+. -.....+++.+++.|+.+.... |+..|. .+.. .++.+..
T Consensus 129 ~~~~~~~~~~~~~h----------------------~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~-- 184 (340)
T 1got_B 129 REGNVRVSRELAGH----------------------TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT-- 184 (340)
T ss_dssp CSBSCEEEEEEECC----------------------SSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS--
T ss_pred CCCcceeEEEecCC----------------------CccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCC--
Confidence 111111 11111 0123456666677766665544 777774 3433 3332221
Q ss_pred CCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcC-CCcE-EEEecCCCCCCCCCCCCccccccc
Q psy4832 332 HNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTN-DLKV-KIVAGIPLHCRTGDKDKRDFKDKQ 407 (770)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~-~G~v-~~vaG~~~~~~~~~~~~~~~~~~~ 407 (770)
.....++++| ++.++++- .+.|+..+. ++.. ..+.+.
T Consensus 185 --------------------~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h------------------ 225 (340)
T 1got_B 185 --------------------GDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGH------------------ 225 (340)
T ss_dssp --------------------SCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCC------------------
T ss_pred --------------------CceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCC------------------
Confidence 1346789999 88776654 466777763 3432 222211
Q ss_pred cccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCc-EEEeecCccCCCCCcCCCCCccc
Q psy4832 408 SKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGR-MFDFAGRWQSDKKNCNTTNCAEF 485 (770)
Q Consensus 408 ~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~-i~~~aG~~~~~~~~~~~~~~~~~ 485 (770)
-....+|+++|+|.++++-...+. |+..|. .+. +..+.. .
T Consensus 226 -------------------~~~v~~v~~~p~~~~l~s~s~d~~---v~iwd~~~~~~~~~~~~-~--------------- 267 (340)
T 1got_B 226 -------------------ESDINAICFFPNGNAFATGSDDAT---CRLFDLRADQELMTYSH-D--------------- 267 (340)
T ss_dssp -------------------SSCEEEEEECTTSSEEEEEETTSC---EEEEETTTTEEEEEECC-T---------------
T ss_pred -------------------cCCEEEEEEcCCCCEEEEEcCCCc---EEEEECCCCcEEEEEcc-C---------------
Confidence 123688999999997777666554 555554 233 222210 0
Q ss_pred ccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEee
Q psy4832 486 EKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILAL 527 (770)
Q Consensus 486 ~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i 527 (770)
........++++|+|.++++-..++.|+..
T Consensus 268 ------------~~~~~v~~~~~s~~g~~l~~g~~d~~i~vw 297 (340)
T 1got_B 268 ------------NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297 (340)
T ss_dssp ------------TCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ------------CcccceEEEEECCCCCEEEEECCCCeEEEE
Confidence 001235789999999887776555555444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.079 Score=62.66 Aligned_cols=145 Identities=12% Similarity=0.051 Sum_probs=82.3
Q ss_pred CceEEEEcCCCCEEEE-eC-ceEEEEc-CCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 181 TPVALTSGPDGSLYVG-DF-NLVRRLT-PEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~-d~-~~I~~i~-~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
...++++.|+|.+.++ .. +.|+.++ .+|+....+. ..-.....++++| ++.+.++-..++.|..++.
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~---~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~------ 84 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ---VTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNY------ 84 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEEEG-GGTEEEEEETTSEEEEEET------
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe---cCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEEC------
Confidence 4578999999985554 43 4788887 4566655543 1223467899998 5665555555678877753
Q ss_pred CCCcE-EEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC-eEEECCC-C-cEE-EeecCCCC
Q psy4832 258 PSINW-EVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN-IRVVSPE-G-IIH-TLIGHHKH 331 (770)
Q Consensus 258 ~~g~~-~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~-Ir~id~~-G-~i~-t~~g~~~~ 331 (770)
.++.. ..+.+. -.....+++.++|. |..+.... |+..+.+ + ... .+.+..
T Consensus 85 ~~~~~~~~~~~~----------------------~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-- 140 (814)
T 3mkq_A 85 NTGEKVVDFEAH----------------------PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE-- 140 (814)
T ss_dssp TTCCEEEEEECC----------------------SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCS--
T ss_pred CCCcEEEEEecC----------------------CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCC--
Confidence 22332 222211 11356889999887 44444443 6666633 2 222 222211
Q ss_pred CCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEE-e-CCEEEEEcC
Q psy4832 332 HNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFI-D-DRVIFKLTN 379 (770)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~-D-~~~I~~i~~ 379 (770)
.....++++|.++.++++ . ++.|+.++.
T Consensus 141 --------------------~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~ 170 (814)
T 3mkq_A 141 --------------------HFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170 (814)
T ss_dssp --------------------SCEEEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred --------------------CcEEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 135678888744544443 3 466766663
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0097 Score=65.01 Aligned_cols=173 Identities=16% Similarity=0.117 Sum_probs=96.5
Q ss_pred ceEEEEcCCCcE-EEEeccCcccccceeEEEEeCCCCcEEEEeCCC--cEEEEEeccCCccCCCCcEEEEECCCccccCC
Q psy4832 199 NLVRRLTPEGNV-FTVLQLSATQVSYQYYLALSPADGHLYISDAEK--HQILRVLSLESVADPSINWEVAVGSGERCIPG 275 (770)
Q Consensus 199 ~~I~~i~~~G~v-~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~--~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~ 275 (770)
..|+.++.+|.. ..+.+ .-.....++++|.+..|+++...+ ..|+.++. .++....+.+..
T Consensus 159 ~~i~i~d~~g~~~~~l~~----~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~------~tg~~~~l~~~~------ 222 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHR----SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTL------ANGAVRQVASFP------ 222 (415)
T ss_dssp EEEEEEETTSCSCEEEEE----ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEET------TTCCEEEEECCS------
T ss_pred ceEEEEcCCCCCCEEEeC----CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEEC------CCCcEEEeecCC------
Confidence 467777766543 33332 123467899998555566665443 57877753 234444443211
Q ss_pred CCCCcCCCcccccccccCcceEEEccCCc-EEEEeC---CC-eEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccc
Q psy4832 276 DETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADG---TN-IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTA 349 (770)
Q Consensus 276 ~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~---~~-Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~ 349 (770)
.....+++.|+|. |+++.. .. |+.++.. +....+.+..
T Consensus 223 ----------------~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~-------------------- 266 (415)
T 2hqs_A 223 ----------------RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-------------------- 266 (415)
T ss_dssp ----------------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCS--------------------
T ss_pred ----------------CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCC--------------------
Confidence 1245789999997 554532 22 8888854 5665544321
Q ss_pred cccCcceEEEeCCCCe-EEEEeC----CEEEEEcCC-CcEEEEecCCCCCCCCCCCCccccccccccccccccCCccccc
Q psy4832 350 QLQWPTGLALSPLDDS-LHFIDD----RVIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRAS 423 (770)
Q Consensus 350 ~l~~P~gla~d~~~g~-lyv~D~----~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 423 (770)
.....++++| +|. |+++.. .+|+.++.+ +++..+...
T Consensus 267 --~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~---------------------------------- 309 (415)
T 2hqs_A 267 --SNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE---------------------------------- 309 (415)
T ss_dssp --SCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCCEECCCS----------------------------------
T ss_pred --CcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCEEEEecC----------------------------------
Confidence 1345788999 776 665542 278888854 333222110
Q ss_pred ccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcEE
Q psy4832 424 NMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRMF 464 (770)
Q Consensus 424 ~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i~ 464 (770)
-.....++++|+|. |+++...+.. ..|..++. +|++.
T Consensus 310 ---~~~~~~~~~spdG~~l~~~~~~~g~-~~i~~~d~~~~~~~ 348 (415)
T 2hqs_A 310 ---GSQNQDADVSSDGKFMVMVSSNGGQ-QHIAKQDLATGGVQ 348 (415)
T ss_dssp ---SSEEEEEEECTTSSEEEEEEECSSC-EEEEEEETTTCCEE
T ss_pred ---CCcccCeEECCCCCEEEEEECcCCc-eEEEEEECCCCCEE
Confidence 01256789999998 5555443221 24677775 44443
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00023 Score=69.71 Aligned_cols=155 Identities=14% Similarity=0.077 Sum_probs=93.3
Q ss_pred ccCcceEEEccCCcEEEEeCCCeEEECCCC-------cEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCC
Q psy4832 291 LSHPKGLAIKADKTMFIADGTNIRVVSPEG-------IIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLD 363 (770)
Q Consensus 291 l~~P~gIavd~~G~lYvaD~~~Ir~id~~G-------~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~ 363 (770)
+...+.||++|+|.||.+..++++++++.. ...+.+|..+- +.-..+.+|+ +
T Consensus 40 w~~~~~laf~P~G~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw--------------------~~F~a~~fD~-~ 98 (236)
T 1tl2_A 40 WSNFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKKIGNGGW--------------------NQFQFLFFDP-N 98 (236)
T ss_dssp CTTCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEEEECSCG--------------------GGCSEEEECT-T
T ss_pred cccceeEEECCCccEEEEeCCeEEEECCCCCCcccccccccEeccccc--------------------ccceEEEECC-C
Confidence 456779999999999998666699998621 11344444321 1134799999 9
Q ss_pred CeEEEEeCCEEEEEcC--CCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCE
Q psy4832 364 DSLHFIDDRVIFKLTN--DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDL 441 (770)
Q Consensus 364 g~lyv~D~~~I~~i~~--~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~l 441 (770)
|.||++.++.|+|+++ ++.-. .++... ...+.....-..|+++|+|.|
T Consensus 99 G~LYav~dG~iyr~~pP~~~~~~-Wl~~a~-----------------------------~vg~~gw~~~~~lff~p~G~L 148 (236)
T 1tl2_A 99 GYLYAVSKDKLYKASPPQSDTDN-WIARAT-----------------------------EVGSGGWSGFKFLFFHPNGYL 148 (236)
T ss_dssp SCEEEEETTEEEEESCCCSTTCC-HHHHSE-----------------------------EEECSSGGGEEEEEECTTSCE
T ss_pred CCEEEeCCCEEEEeCCCcCCCCc-eecccc-----------------------------EeccCCCCceEEEEECCCceE
Confidence 9999998899999985 33211 110000 000011223488999999999
Q ss_pred EEEeCCCCceeeEEEEcCCCc------EEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEE
Q psy4832 442 YIADIDARKVNALRVIDSTGR------MFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVN 515 (770)
Q Consensus 442 yVaD~~~~ri~~i~~i~~~G~------i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~ly 515 (770)
|.+. +. ++ .+...|.+. ..+..|.. .++.-.-+.++++|.||
T Consensus 149 yav~-dg-~l--yr~~~P~~~~~~wl~~~~~~g~~----------------------------g~~~yr~l~f~~~G~l~ 196 (236)
T 1tl2_A 149 YAVH-GQ-QF--YKALPPVSNQDNWLARATKIGQG----------------------------GWDTFKFLFFSSVGTLF 196 (236)
T ss_dssp EEEE-TT-EE--EEECCCSSTTCCHHHHCEEEESS----------------------------SGGGEEEEEECTTSCEE
T ss_pred EEEe-CC-cE--EecCCCCCCCcccccccceeccC----------------------------CcceEEEEEECCCCcEE
Confidence 9999 54 32 233334221 01111100 01122237799999999
Q ss_pred EEcCCCceEEeeecC
Q psy4832 516 VADQGSLHILALQHY 530 (770)
Q Consensus 516 vaD~~~~~I~~i~~~ 530 (770)
.+. ++++++..+.
T Consensus 197 ~v~--~g~~Y~~~~p 209 (236)
T 1tl2_A 197 GVQ--GGKFYEDYPP 209 (236)
T ss_dssp EEE--TTEEEEESCC
T ss_pred EEe--CCeEEecCCc
Confidence 988 7788887544
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.086 Score=59.77 Aligned_cols=199 Identities=12% Similarity=0.041 Sum_probs=104.1
Q ss_pred cCceEEEEcCCCCEEE-EeCceEEEEcCC-C----cEEEEeccCcccccc-eeEEEEeCC-CCcEEEEeCCCcEEEEEec
Q psy4832 180 LTPVALTSGPDGSLYV-GDFNLVRRLTPE-G----NVFTVLQLSATQVSY-QYYLALSPA-DGHLYISDAEKHQILRVLS 251 (770)
Q Consensus 180 ~~P~~la~~~dG~lyv-~d~~~I~~i~~~-G----~v~~~~~~~~~~~~~-p~~lav~p~-~g~lyvsd~~~~~I~~i~~ 251 (770)
..+..+++.|+|.+++ +..+.|+.++.+ + +....+. ..-.. ...++++|. ++.+.++-..++.|..++.
T Consensus 19 ~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~---~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~ 95 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT---GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 95 (615)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC---TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred CceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEe---cCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeC
Confidence 3467889999998544 445677777654 4 3444332 12234 689999972 4444444444566666532
Q ss_pred cCCcc--CCCCcEE-EEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEE-eCC-----CeEEECCCCcE
Q psy4832 252 LESVA--DPSINWE-VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIA-DGT-----NIRVVSPEGII 322 (770)
Q Consensus 252 ~~~~~--~~~g~~~-~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYva-D~~-----~Ir~id~~G~i 322 (770)
..+.. ....... .+.+ .-.....|++.++|...++ ... .|+..+....+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~----------------------~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~ 153 (615)
T 1pgu_A 96 TFDKESNSVEVNVKSEFQV----------------------LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSL 153 (615)
T ss_dssp EEEGGGTEEEEEEEEEEEC----------------------CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEE
T ss_pred CCCcccccccccccchhhc----------------------ccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcc
Confidence 10000 0000111 1111 0113568899998875444 322 26666644444
Q ss_pred EEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEE-e-CCEEEEEcC-CCcEE-EEecCCCCCCCCC
Q psy4832 323 HTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFI-D-DRVIFKLTN-DLKVK-IVAGIPLHCRTGD 397 (770)
Q Consensus 323 ~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~-D-~~~I~~i~~-~G~v~-~vaG~~~~~~~~~ 397 (770)
.++.+. -.....++++| ++. ++++ . ++.|+.++. .++.. .+.+...
T Consensus 154 ~~~~~~----------------------~~~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~------ 204 (615)
T 1pgu_A 154 GEVSGH----------------------SQRINACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK------ 204 (615)
T ss_dssp EECCSC----------------------SSCEEEEEECS-SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSC------
T ss_pred eeeecC----------------------CccEEEEEECC-CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCC------
Confidence 443322 12356899999 664 4444 3 567777773 34322 2221100
Q ss_pred CCCccccccccccccccccCCcccccccccCCeeEEEEcCC-CCEEEEeCCCCceeeEEEEc-CCCcE
Q psy4832 398 KDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPT-GDLYIADIDARKVNALRVID-STGRM 463 (770)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~-G~lyVaD~~~~ri~~i~~i~-~~G~i 463 (770)
.-.....++++|+ |.++++-...+. |+..+ .+++.
T Consensus 205 ----------------------------~~~~v~~~~~~~~~~~~l~~~~~dg~---i~vwd~~~~~~ 241 (615)
T 1pgu_A 205 ----------------------------QGSFVRDVEFSPDSGEFVITVGSDRK---ISCFDGKSGEF 241 (615)
T ss_dssp ----------------------------TTCCEEEEEECSTTCCEEEEEETTCC---EEEEETTTCCE
T ss_pred ----------------------------CCceEEEEEECCCCCCEEEEEeCCCe---EEEEECCCCCE
Confidence 0013688999999 886665554443 55555 34554
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.036 Score=59.03 Aligned_cols=149 Identities=9% Similarity=-0.053 Sum_probs=86.3
Q ss_pred CceEEEEcCCC-CEEEEe-C-ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCcc
Q psy4832 181 TPVALTSGPDG-SLYVGD-F-NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVA 256 (770)
Q Consensus 181 ~P~~la~~~dG-~lyv~d-~-~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~ 256 (770)
...++++.|+| .++++- . +.|+.++.+ ++....+.. ...-.....++++|.++.++++-..++.|..++..
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~---- 149 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG-MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS---- 149 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC-CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT----
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec-CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC----
Confidence 34678899988 655543 3 578888754 444444421 11234567899998566777776667778777421
Q ss_pred CCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEE-eCCC-eEEECCCCcE-EEeecCCCCCC
Q psy4832 257 DPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIA-DGTN-IRVVSPEGII-HTLIGHHKHHN 333 (770)
Q Consensus 257 ~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYva-D~~~-Ir~id~~G~i-~t~~g~~~~~~ 333 (770)
...+..+.+.... -.....+++.+++.++++ .... |+..|.++.. .++.+.
T Consensus 150 --~~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h----- 203 (383)
T 3ei3_B 150 --GSVIQVFAKTDSW-------------------DYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLH----- 203 (383)
T ss_dssp --SCEEEEEECCCCS-------------------SCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECS-----
T ss_pred --CCceEEEeccCCC-------------------CCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccC-----
Confidence 1223333321100 123568899998885554 3333 8877766543 333321
Q ss_pred CcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe--CCEEEEEc
Q psy4832 334 IWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID--DRVIFKLT 378 (770)
Q Consensus 334 ~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D--~~~I~~i~ 378 (770)
-.....|+++| ++. ++++- ++.|+.++
T Consensus 204 -----------------~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd 233 (383)
T 3ei3_B 204 -----------------KAKVTHAEFNP-RCDWLMATSSVDATVKLWD 233 (383)
T ss_dssp -----------------SSCEEEEEECS-SCTTEEEEEETTSEEEEEE
T ss_pred -----------------CCcEEEEEECC-CCCCEEEEEeCCCEEEEEe
Confidence 12456899999 765 55543 45666666
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.059 Score=56.65 Aligned_cols=220 Identities=15% Similarity=0.167 Sum_probs=119.0
Q ss_pred ceEEEEcCCCCEEEEeC--ceEEEEcCCC-----cEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCC
Q psy4832 182 PVALTSGPDGSLYVGDF--NLVRRLTPEG-----NVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLES 254 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~--~~I~~i~~~G-----~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~ 254 (770)
...+++.|+|.++++-. +.|+.++... .....+. ........+++.+ ++.|+ +-...+.|..++.
T Consensus 100 v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~-~~~l~-s~s~d~~i~~wd~--- 171 (340)
T 1got_B 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA---GHTGYLSCCRFLD-DNQIV-TSSGDTTCALWDI--- 171 (340)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEE---CCSSCEEEEEEEE-TTEEE-EEETTSCEEEEET---
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEec---CCCccEEEEEECC-CCcEE-EEECCCcEEEEEC---
Confidence 46788999998766543 4666666432 1222221 1122345677775 55544 4444566666642
Q ss_pred ccCCCCcEE-EEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC-C-eEEECC-CCc-EEEeecCC
Q psy4832 255 VADPSINWE-VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT-N-IRVVSP-EGI-IHTLIGHH 329 (770)
Q Consensus 255 ~~~~~g~~~-~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~-~-Ir~id~-~G~-i~t~~g~~ 329 (770)
.++... .+.+. -.....+++.+++.++++-+. . |+..|. .+. +.++.+..
T Consensus 172 ---~~~~~~~~~~~h----------------------~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~ 226 (340)
T 1got_B 172 ---ETGQQTTTFTGH----------------------TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226 (340)
T ss_dssp ---TTTEEEEEECCC----------------------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS
T ss_pred ---CCCcEEEEEcCC----------------------CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc
Confidence 123222 11110 112457899998887766433 2 777774 343 33332221
Q ss_pred CCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCC-CcEEEEecCCCCCCCCCCCCcccccc
Q psy4832 330 KHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDK 406 (770)
Q Consensus 330 ~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~ 406 (770)
.....|+++| +++++++- .+.|+.++.. ++........
T Consensus 227 ----------------------~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~---------------- 267 (340)
T 1got_B 227 ----------------------SDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHD---------------- 267 (340)
T ss_dssp ----------------------SCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCT----------------
T ss_pred ----------------------CCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEccC----------------
Confidence 1356899999 77766654 4667777643 3322211100
Q ss_pred ccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCc-EEEeecCccCCCCCcCCCCCcc
Q psy4832 407 QSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGR-MFDFAGRWQSDKKNCNTTNCAE 484 (770)
Q Consensus 407 ~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~-i~~~aG~~~~~~~~~~~~~~~~ 484 (770)
........++++|+|.++++-...+. |+..+. .+. +..+.|-.
T Consensus 268 ------------------~~~~~v~~~~~s~~g~~l~~g~~d~~---i~vwd~~~~~~~~~~~~h~-------------- 312 (340)
T 1got_B 268 ------------------NIICGITSVSFSKSGRLLLAGYDDFN---CNVWDALKADRAGVLAGHD-------------- 312 (340)
T ss_dssp ------------------TCCSCEEEEEECTTSSEEEEEETTSE---EEEEETTTCCEEEEEECCS--------------
T ss_pred ------------------CcccceEEEEECCCCCEEEEECCCCe---EEEEEcccCcEeeEeecCC--------------
Confidence 00123688999999998887766654 455553 333 33333211
Q ss_pred cccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceE
Q psy4832 485 FEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHI 524 (770)
Q Consensus 485 ~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I 524 (770)
....+|+++|+|..+++-...+.|
T Consensus 313 ----------------~~v~~~~~s~dg~~l~s~s~D~~i 336 (340)
T 1got_B 313 ----------------NRVSCLGVTDDGMAVATGSWDSFL 336 (340)
T ss_dssp ----------------SCEEEEEECTTSSCEEEEETTSCE
T ss_pred ----------------CcEEEEEEcCCCCEEEEEcCCccE
Confidence 235679999999766654444444
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.064 Score=62.89 Aligned_cols=154 Identities=13% Similarity=0.068 Sum_probs=83.1
Q ss_pred CceEEEEcCCCC-EEEEeC--c-----eEEEEcCC-CcEEEEeccCcccc---------------------cceeEEEEe
Q psy4832 181 TPVALTSGPDGS-LYVGDF--N-----LVRRLTPE-GNVFTVLQLSATQV---------------------SYQYYLALS 230 (770)
Q Consensus 181 ~P~~la~~~dG~-lyv~d~--~-----~I~~i~~~-G~v~~~~~~~~~~~---------------------~~p~~lav~ 230 (770)
.+..+++.|||. |+++.. + .|+.++.+ |+...++....... .....++++
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 578999999998 444443 3 68888865 66655553211100 124678999
Q ss_pred CCCCcEEEEeCCCcEEEEEeccCCccCCCC---cEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EE
Q psy4832 231 PADGHLYISDAEKHQILRVLSLESVADPSI---NWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MF 306 (770)
Q Consensus 231 p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g---~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lY 306 (770)
|.+..|+++.. +.|+.++..+ + ....+.. .-..+..+++.|+|. |.
T Consensus 118 pDg~~l~~~~~--~~i~~~d~~~------~~~~~~~~l~~----------------------~~~~~~~~~~SPDG~~la 167 (741)
T 2ecf_A 118 PDAQRLLFPLG--GELYLYDLKQ------EGKAAVRQLTH----------------------GEGFATDAKLSPKGGFVS 167 (741)
T ss_dssp TTSSEEEEEET--TEEEEEESSS------CSTTSCCBCCC----------------------SSSCEEEEEECTTSSEEE
T ss_pred CCCCEEEEEeC--CcEEEEECCC------CCcceEEEccc----------------------CCcccccccCCCCCCEEE
Confidence 85555666665 6788774311 1 1111110 011356789999997 55
Q ss_pred EEeCCCeEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe
Q psy4832 307 IADGTNIRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID 370 (770)
Q Consensus 307 vaD~~~Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D 370 (770)
++...+|+.++.+ |....+...+... ...+......+..+..+.+++++| +|+ |+++.
T Consensus 168 ~~~~~~i~~~d~~~g~~~~~~~~~~~~-----~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~ 227 (741)
T 2ecf_A 168 FIRGRNLWVIDLASGRQMQLTADGSTT-----IGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYAR 227 (741)
T ss_dssp EEETTEEEEEETTTTEEEECCCCCCSS-----EEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEE
T ss_pred EEeCCcEEEEecCCCCEEEeccCCccc-----eeccccceeeeeccccccceEECC-CCCEEEEEE
Confidence 5554458888865 4554443222100 000000000111244578899999 775 66653
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.033 Score=65.07 Aligned_cols=65 Identities=9% Similarity=0.017 Sum_probs=42.7
Q ss_pred cCceEEEEcCCCCEEEEeCceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 180 LTPVALTSGPDGSLYVGDFNLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 180 ~~P~~la~~~dG~lyv~d~~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
..+..+++.||+.+.++..+.|+.++.+ |+...+... -.....++++|.+..|+++. ++.|+.++
T Consensus 82 ~~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l~~~----~~~~~~~~~SpdG~~la~~~--~~~i~v~~ 147 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYLFDT----NEETASLDFSPVGDRVAYVR--NHNLYIAR 147 (706)
T ss_dssp CCCEEEEETTTTEEEEEETTEEEEEETTTTEEEEEECC----TTCCTTCEECTTSSEEEEEE--TTEEEEEE
T ss_pred cCceeEEECCCCeEEEEECCEEEEEECCCCceEEccCC----cccccCCcCCCCCCEEEEEE--CCeEEEEe
Confidence 4578999999977777766788888865 444444321 12356788998444555543 46777775
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.066 Score=55.97 Aligned_cols=65 Identities=8% Similarity=0.030 Sum_probs=43.0
Q ss_pred ceEEEEcCCCCEEEE-eC-ceEEEEc-CCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGPDGSLYVG-DF-NLVRRLT-PEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~dG~lyv~-d~-~~I~~i~-~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
..++++.|+|.++++ .. +.|+.++ .+++....+. ..-.....++++| ++.++++-..++.|..++
T Consensus 35 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD---GHTGTIWSIDVDC-FTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh---hcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEE
Confidence 467888898885554 33 4677776 4566665552 2233467899998 666666666667887775
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00046 Score=77.06 Aligned_cols=125 Identities=23% Similarity=0.257 Sum_probs=78.5
Q ss_pred ccccCcceEEEeCCCCeEEEEeC-----------------------CEEEEEcCCC----------cEEEEecCCCCCCC
Q psy4832 349 AQLQWPTGLALSPLDDSLHFIDD-----------------------RVIFKLTNDL----------KVKIVAGIPLHCRT 395 (770)
Q Consensus 349 ~~l~~P~gla~d~~~g~lyv~D~-----------------------~~I~~i~~~G----------~v~~vaG~~~~~~~ 395 (770)
..|..|.+++++|.++.||++-+ +.|+++.+++ .+..+.|.+.....
T Consensus 381 T~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~ 460 (592)
T 4a9v_A 381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG 460 (592)
T ss_dssp CCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred ccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccc
Confidence 45778999999998999999841 4688887532 12233444332100
Q ss_pred CCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEE-EeCCCC--------ceeeEEEEcC-CCcEEE
Q psy4832 396 GDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYI-ADIDAR--------KVNALRVIDS-TGRMFD 465 (770)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyV-aD~~~~--------ri~~i~~i~~-~G~i~~ 465 (770)
. .+...........|..|.+|+||++|.||| +|.... --+.+..+++ +|++..
T Consensus 461 ~-----------------~~~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~ 523 (592)
T 4a9v_A 461 T-----------------PKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRR 523 (592)
T ss_dssp S-----------------GGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEE
T ss_pred c-----------------cccCccCccccCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEE
Confidence 0 000001111234689999999999999999 775311 1125677787 688877
Q ss_pred eecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCC-cEEEEc
Q psy4832 466 FAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDG-VVNVAD 518 (770)
Q Consensus 466 ~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG-~lyvaD 518 (770)
++-.+ .+..|.|++++||+ .|||+-
T Consensus 524 fl~~P----------------------------~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 524 FMVGP----------------------------IGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEECC----------------------------TTCEEEEEEECTTSSEEEEEE
T ss_pred EEeCC----------------------------CCccccCCEECCCCCEEEEEE
Confidence 76322 02348999999998 578773
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.066 Score=58.05 Aligned_cols=66 Identities=9% Similarity=0.069 Sum_probs=43.4
Q ss_pred CceEEEEcCCCCEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 181 TPVALTSGPDGSLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
...++++.|+|.++++-. +.|+.++.. ++....+. ..-.....++++| ++..+++-..++.|..++
T Consensus 152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~---~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd 220 (410)
T 1vyh_C 152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH---GHDHNVSSVSIMP-NGDHIVSASRDKTIKMWE 220 (410)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC---CCSSCEEEEEECS-SSSEEEEEETTSEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc---CCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEE
Confidence 357899999998776543 467777654 44443332 1223467899998 677667766777887775
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00043 Score=67.75 Aligned_cols=153 Identities=20% Similarity=0.191 Sum_probs=92.7
Q ss_pred ccCceEEEEcCCCCEEEEeCceEEEEcCCC-c------EEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEec
Q psy4832 179 LLTPVALTSGPDGSLYVGDFNLVRRLTPEG-N------VFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLS 251 (770)
Q Consensus 179 l~~P~~la~~~dG~lyv~d~~~I~~i~~~G-~------v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~ 251 (770)
+.+...|+++|+|.||....+.+.++++.. . ..+.++ ......=..+.+|| +|.||++ .+++|+|++.
T Consensus 40 w~~~~~laf~P~G~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~IG--~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 40 WSNFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKKIG--NGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp CTTCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEEEE--CSCGGGCSEEEECT-TSCEEEE--ETTEEEEESC
T ss_pred cccceeEEECCCccEEEEeCCeEEEECCCCCCcccccccccEec--ccccccceEEEECC-CCCEEEe--CCCEEEEeCC
Confidence 567779999999999999667999998732 1 133443 22333345788996 9999999 3489999953
Q ss_pred cCCccCCCCcE---EEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCCeEEE-CCCCc------
Q psy4832 252 LESVADPSINW---EVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTNIRVV-SPEGI------ 321 (770)
Q Consensus 252 ~~~~~~~~g~~---~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~Ir~i-d~~G~------ 321 (770)
.. +.+.++ ...+|.+. ...-..|+++++|.||-+..+++++- .|.+.
T Consensus 115 P~---~~~~~Wl~~a~~vg~~g--------------------w~~~~~lff~p~G~Lyav~dg~lyr~~~P~~~~~~wl~ 171 (236)
T 1tl2_A 115 PQ---SDTDNWIARATEVGSGG--------------------WSGFKFLFFHPNGYLYAVHGQQFYKALPPVSNQDNWLA 171 (236)
T ss_dssp CC---STTCCHHHHSEEEECSS--------------------GGGEEEEEECTTSCEEEEETTEEEEECCCSSTTCCHHH
T ss_pred Cc---CCCCceeccccEeccCC--------------------CCceEEEEECCCceEEEEeCCcEEecCCCCCCCccccc
Confidence 11 011111 01111111 12236899999999998884446543 23211
Q ss_pred EEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeCCEEEEEcCC
Q psy4832 322 IHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFKLTND 380 (770)
Q Consensus 322 i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~~~I~~i~~~ 380 (770)
-.+.+|... ...=.-|.+++ ++.||.+.+.++++..++
T Consensus 172 ~~~~~g~~g--------------------~~~yr~l~f~~-~G~l~~v~~g~~Y~~~~p 209 (236)
T 1tl2_A 172 RATKIGQGG--------------------WDTFKFLFFSS-VGTLFGVQGGKFYEDYPP 209 (236)
T ss_dssp HCEEEESSS--------------------GGGEEEEEECT-TSCEEEEETTEEEEESCC
T ss_pred ccceeccCC--------------------cceEEEEEECC-CCcEEEEeCCeEEecCCc
Confidence 112222111 00111266888 999999888899988754
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.61 E-value=0.031 Score=58.84 Aligned_cols=65 Identities=11% Similarity=-0.017 Sum_probs=40.5
Q ss_pred ceEEEEcCCCCEEEEe-C-ceEEEEcCCCc---EEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGPDGSLYVGD-F-NLVRRLTPEGN---VFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~dG~lyv~d-~-~~I~~i~~~G~---v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
..++++.|+|.++++- . +.|+.++.+.. ....+. ..-.....++++| ++.++++-..++.|+.++
T Consensus 11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~---~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK---EHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE---CCSSCEEEEEEET-TTTEEEEEETTSCEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec---CCCCcccEEEEeC-CCCEEEEEcCCCeEEEEE
Confidence 4678899999866654 3 57777775543 333331 1233467899998 666666555556666664
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.061 Score=58.31 Aligned_cols=143 Identities=14% Similarity=0.143 Sum_probs=83.5
Q ss_pred CceEEEEcCCCCEEEEeC--ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 181 TPVALTSGPDGSLYVGDF--NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~--~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
....+++.|++.++++-. +.|+.++. +|+....+. ..-.....++++| ++.++++-..++.|+.++..
T Consensus 110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~---~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~----- 180 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK---GHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQ----- 180 (410)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC---CCSSCEEEEEECT-TSSEEEEEETTSCCCEEETT-----
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe---ccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCC-----
Confidence 457889999998777643 47888874 455554442 1223467899997 67777776666666666321
Q ss_pred CCCcEE-EEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeC-CC-eEEECC-CCc-EEEeecCCCCC
Q psy4832 258 PSINWE-VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADG-TN-IRVVSP-EGI-IHTLIGHHKHH 332 (770)
Q Consensus 258 ~~g~~~-~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~-~~-Ir~id~-~G~-i~t~~g~~~~~ 332 (770)
.+... .+.+ + -.....+++.++|..+++-+ .. |+..|. .|. +.++.+..
T Consensus 181 -~~~~~~~~~~-----------h-----------~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~--- 234 (410)
T 1vyh_C 181 -GFECIRTMHG-----------H-----------DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--- 234 (410)
T ss_dssp -SSCEEECCCC-----------C-----------SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS---
T ss_pred -CCceeEEEcC-----------C-----------CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC---
Confidence 11111 1110 0 11345788998888655543 33 777764 343 44443321
Q ss_pred CCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEc
Q psy4832 333 NIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLT 378 (770)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~ 378 (770)
.+...+++++ ++.++++- ++.|+..+
T Consensus 235 -------------------~~v~~~~~~~-~g~~l~s~s~D~~v~vwd 262 (410)
T 1vyh_C 235 -------------------EWVRMVRPNQ-DGTLIASCSNDQTVRVWV 262 (410)
T ss_dssp -------------------SCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred -------------------ccEEEEEECC-CCCEEEEEcCCCeEEEEE
Confidence 1345678888 77766654 45666666
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.056 Score=57.28 Aligned_cols=150 Identities=14% Similarity=0.070 Sum_probs=81.9
Q ss_pred ceEEEEcCCCCEEEEeC-ceEEEEcC-CCcEEEEeccC-cccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC
Q psy4832 182 PVALTSGPDGSLYVGDF-NLVRRLTP-EGNVFTVLQLS-ATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP 258 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~-~~I~~i~~-~G~v~~~~~~~-~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~ 258 (770)
-.++++.+++.|..+.. +.|+.++. +|+........ ...-.....|+++| +|.++++-...+.|+.++. .
T Consensus 85 v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~------~ 157 (344)
T 4gqb_B 85 VADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDL------A 157 (344)
T ss_dssp EEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEET------T
T ss_pred EEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEEC------C
Confidence 46789999988887766 46777663 34322221100 11122357899998 7777777766777777742 2
Q ss_pred CCcEE-EEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeC-CC-eEEECCC-CcEEEeecCCCCCC
Q psy4832 259 SINWE-VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADG-TN-IRVVSPE-GIIHTLIGHHKHHN 333 (770)
Q Consensus 259 ~g~~~-~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~-~~-Ir~id~~-G~i~t~~g~~~~~~ 333 (770)
++... .+.|- -.....+++.+++. ++++-+ .+ |+..|.. ++....+....
T Consensus 158 ~~~~~~~~~~h----------------------~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--- 212 (344)
T 4gqb_B 158 QQVVLSSYRAH----------------------AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA--- 212 (344)
T ss_dssp TTEEEEEECCC----------------------SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------
T ss_pred CCcEEEEEcCc----------------------CCceEEEEecCCCCCceeeeccccccccccccccceeeeeecce---
Confidence 23322 22110 11245788888764 665533 23 7777643 33222221110
Q ss_pred CcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcC
Q psy4832 334 IWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTN 379 (770)
Q Consensus 334 ~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~ 379 (770)
.-..+..++++|.++.++++- ++.|+.++.
T Consensus 213 ----------------~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 213 ----------------PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp -----------------CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred ----------------eeccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 112356889998556676653 567777763
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.002 Score=67.97 Aligned_cols=144 Identities=16% Similarity=0.120 Sum_probs=84.0
Q ss_pred EEEEeC----ceEEEE--cCCCcEEEEecc---C-cccccceeEEEE--eCCCCc--EEEEeCCCcEEEEEeccCCccCC
Q psy4832 193 LYVGDF----NLVRRL--TPEGNVFTVLQL---S-ATQVSYQYYLAL--SPADGH--LYISDAEKHQILRVLSLESVADP 258 (770)
Q Consensus 193 lyv~d~----~~I~~i--~~~G~v~~~~~~---~-~~~~~~p~~lav--~p~~g~--lyvsd~~~~~I~~i~~~~~~~~~ 258 (770)
+|+++. ++|+.+ +++....+.++. + ...+..|+|||+ +|..+. +||++.. +++..+.... ..
T Consensus 89 a~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~---~~ 164 (355)
T 3amr_A 89 AAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKA---DK 164 (355)
T ss_dssp EEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEE---CT
T ss_pred EEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEe---CC
Confidence 355553 455544 655333333322 1 145688999999 776664 7777766 6776653211 12
Q ss_pred CCcEE--EEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC-eEEECCC------CcEEEeecC
Q psy4832 259 SINWE--VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN-IRVVSPE------GIIHTLIGH 328 (770)
Q Consensus 259 ~g~~~--~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~-Ir~id~~------G~i~t~~g~ 328 (770)
+|.+. .+.-... -..|.|+++|+ .|.|||++... |++++.+ +.+...++.
T Consensus 165 ~g~~~~~lVR~f~l--------------------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~ 224 (355)
T 3amr_A 165 NGYISGKKVRAFKM--------------------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG 224 (355)
T ss_dssp TSCEEEEEEEEEEC--------------------SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS
T ss_pred CCcccceEEEEecC--------------------CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC
Confidence 33221 1110000 01588999996 68899999877 9999844 334333332
Q ss_pred CCCCCCcCCCccCCCccccccccc-CcceEEEeCC-C--CeEEEEe--CCEEEEEcCC
Q psy4832 329 HKHHNIWSPFNCHRSFPASTAQLQ-WPTGLALSPL-D--DSLHFID--DRVIFKLTND 380 (770)
Q Consensus 329 ~~~~~~~~p~~~~~~~~~~~~~l~-~P~gla~d~~-~--g~lyv~D--~~~I~~i~~~ 380 (770)
+ .|. .|.||++.+. + +.|++++ ++....++..
T Consensus 225 g--------------------~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 225 R--------------------HLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp S--------------------SBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred C--------------------ccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 2 133 6899999642 2 4699998 5677777653
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.12 Score=53.76 Aligned_cols=65 Identities=14% Similarity=0.117 Sum_probs=43.2
Q ss_pred ceEEEEcCCCCEEEEeC--ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGPDGSLYVGDF--NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~--~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
-..+++.++|.++++-. +.|+.++. +|+....+. ..-.....++++| ++.++++-...+.|+.++
T Consensus 68 v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~---~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd 135 (319)
T 3frx_A 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDK-KASMIISGSRDKTIKVWT 135 (319)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECT-TSCEEEEEETTSCEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEc---cCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEE
Confidence 46788899998766543 57888875 466554442 1223457899997 677777766667777663
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.089 Score=60.78 Aligned_cols=201 Identities=17% Similarity=0.183 Sum_probs=107.7
Q ss_pred CceEEEEcCCCCEEEEe--C----ceEEEEcCCCcEEEEeccCccccc-------ceeEEEEe--CCCCc-EEEEeCCCc
Q psy4832 181 TPVALTSGPDGSLYVGD--F----NLVRRLTPEGNVFTVLQLSATQVS-------YQYYLALS--PADGH-LYISDAEKH 244 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d--~----~~I~~i~~~G~v~~~~~~~~~~~~-------~p~~lav~--p~~g~-lyvsd~~~~ 244 (770)
....+++++++-.|+.. . ..|.+...+|....+..... ... .+ ..++. |.+.. |+++.....
T Consensus 25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~-~~~~~~SPDg~~~la~~~~~~~ 102 (662)
T 3azo_A 25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPW-NVRNRVFEYSGF-PWAGVPRPAGGPLLVFTHFGDQ 102 (662)
T ss_dssp CCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTC-CBCCCGGGTCCC-CEEEECCSSSSCEEEEEBTTTC
T ss_pred ccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCc-cccccccccCCc-cceeeeecCCCeEEEEEECCCC
Confidence 34566777776666655 1 25666556666655543210 101 11 23343 75666 777776677
Q ss_pred EEEEEeccCCccCCC----CcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCC--------
Q psy4832 245 QILRVLSLESVADPS----INWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGT-------- 311 (770)
Q Consensus 245 ~I~~i~~~~~~~~~~----g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~-------- 311 (770)
+|+.++ .+ +....+...... ..-.....+++++||. |+++...
T Consensus 103 ~l~~~~-------~~~~g~~~~~~l~~~~~~-----------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~ 158 (662)
T 3azo_A 103 RLYAFE-------PDAPGGAVPRPLTPVSAV-----------------GGGLRWADPVLLPERGEVWCMAEEFTGEGPSD 158 (662)
T ss_dssp CEEEEC-------TTSTTCCCCEECSCCCCS-----------------TTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred eEEEEc-------CCCCCCCCCEeccCCccC-----------------CCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence 888884 33 333332211000 0011355789999987 5554321
Q ss_pred ---CeEEECCCC-------cEEEee-cCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe-C-------
Q psy4832 312 ---NIRVVSPEG-------IIHTLI-GHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID-D------- 371 (770)
Q Consensus 312 ---~Ir~id~~G-------~i~t~~-g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D-~------- 371 (770)
.|+.++.++ ....+. ... .....++++| +|+ |+++. .
T Consensus 159 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~~----------------------~~~~~~~~Sp-DG~~la~~~~~~~~~~~~ 215 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAADRSAVRELSDDAH----------------------RFVTGPRLSP-DGRQAVWLAWDHPRMPWE 215 (662)
T ss_dssp EEEEEEEEETTSTTTTCGGGSEESSCSCS----------------------SEECCCEECT-TSSEEEEEEECTTCCTTT
T ss_pred ceeEEEEEECCCCccccCCceeEEEecCC----------------------CcccCceECC-CCCEEEEEECCCCCCCCC
Confidence 277777554 333332 111 1344678899 775 65554 2
Q ss_pred -CEEEEEcCC--C---cEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEe
Q psy4832 372 -RVIFKLTND--L---KVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIAD 445 (770)
Q Consensus 372 -~~I~~i~~~--G---~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD 445 (770)
..|+.++.+ | ....+.... -..+..++++|+|.||++.
T Consensus 216 ~~~i~~~d~~~~g~~~~~~~l~~~~------------------------------------~~~~~~~~~spdg~l~~~~ 259 (662)
T 3azo_A 216 GTELKTARVTEDGRFADTRTLLGGP------------------------------------EEAIAQAEWAPDGSLIVAT 259 (662)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEET------------------------------------TBCEEEEEECTTSCEEEEE
T ss_pred CcEEEEEEECCCCcccccEEeCCCC------------------------------------CceEcceEECCCCeEEEEE
Confidence 367777743 5 444443210 0236788999999977765
Q ss_pred CCCCceeeEEEEcC-CCcEEEee
Q psy4832 446 IDARKVNALRVIDS-TGRMFDFA 467 (770)
Q Consensus 446 ~~~~ri~~i~~i~~-~G~i~~~a 467 (770)
..... .+|..++. +|+...+.
T Consensus 260 ~~~~~-~~l~~~~~~~~~~~~l~ 281 (662)
T 3azo_A 260 DRTGW-WNLHRVDPATGAATQLC 281 (662)
T ss_dssp CTTSS-CEEEEECTTTCCEEESS
T ss_pred CCCCC-eEEEEEECCCCceeecc
Confidence 54442 25777776 56665543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.035 Score=59.06 Aligned_cols=68 Identities=10% Similarity=0.003 Sum_probs=39.3
Q ss_pred ceEEEEcCCCCEEEEeC-ceEEEEcCC-CcEEEEeccC-cccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGPDGSLYVGDF-NLVRRLTPE-GNVFTVLQLS-ATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~-~~I~~i~~~-G~v~~~~~~~-~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
-.+|++.|++.++++.. +.|+.++.. ++...+.... ...-.....|+++| ++.++++-..++.|+.++
T Consensus 97 V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd 167 (357)
T 4g56_B 97 VTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWD 167 (357)
T ss_dssp EEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEE
T ss_pred EEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEE
Confidence 56889999999888766 467666532 3322111100 01123357899998 777777766667777774
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.075 Score=56.86 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=39.8
Q ss_pred ceEEEEcCCCCEEEEe-C-ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGPDGSLYVGD-F-NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~dG~lyv~d-~-~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
-.++++.|+|.++++- . +.|+.++. +++....+.. .......++++| ++.+.++-..++.|..++
T Consensus 69 V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~---h~~~v~~~~~s~-~g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 69 VYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL---HCPWVMECAFAP-NGQSVACGGLDSACSIFN 136 (380)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC---CCTTCCCCEECT-TSSEEEECCSSSCCEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec---CCCCEEEEEECC-CCCEEEEeeCCCcEEEEE
Confidence 4678889988866543 3 47888875 3554444421 223356788987 677666665555554443
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.18 Score=53.25 Aligned_cols=222 Identities=14% Similarity=0.077 Sum_probs=118.4
Q ss_pred CceEEEEcCCCCEEEEeC--ceEEEEcCCC--------cEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 181 TPVALTSGPDGSLYVGDF--NLVRRLTPEG--------NVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~--~~I~~i~~~G--------~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
....+++.|+|..+++-. +.|+.++... ....+.+ .......++++| ++..+++-...+.|+.++
T Consensus 108 ~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd 182 (354)
T 2pbi_B 108 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAM----HTNYLSACSFTN-SDMQILTASGDGTCALWD 182 (354)
T ss_dssp CCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEE----CSSCEEEEEECS-SSSEEEEEETTSEEEEEE
T ss_pred CEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeec----cCCcEEEEEEeC-CCCEEEEEeCCCcEEEEe
Confidence 356889999999877654 3555554221 0111111 122346788887 555555655667777774
Q ss_pred ccCCccCCCCc-EEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc--CCcEEEE-eCCC-eEEECC-CCcE-E
Q psy4832 251 SLESVADPSIN-WEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA--DKTMFIA-DGTN-IRVVSP-EGII-H 323 (770)
Q Consensus 251 ~~~~~~~~~g~-~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~--~G~lYva-D~~~-Ir~id~-~G~i-~ 323 (770)
. .++. +..+.+... ....+++.+ +|+++++ .... |+..|. .+.. .
T Consensus 183 ~------~~~~~~~~~~~h~~----------------------~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~ 234 (354)
T 2pbi_B 183 V------ESGQLLQSFHGHGA----------------------DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234 (354)
T ss_dssp T------TTCCEEEEEECCSS----------------------CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE
T ss_pred C------CCCeEEEEEcCCCC----------------------CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 3 1232 223332111 123455544 4554444 3333 777764 3433 2
Q ss_pred EeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCC-CcEEEEecCCCCCCCCCCCC
Q psy4832 324 TLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTND-LKVKIVAGIPLHCRTGDKDK 400 (770)
Q Consensus 324 t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~ 400 (770)
++.+. -.....++++| ++.++++- .+.|+.++.. +.........
T Consensus 235 ~~~~h----------------------~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~---------- 281 (354)
T 2pbi_B 235 AFETH----------------------ESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKE---------- 281 (354)
T ss_dssp EECCC----------------------SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCT----------
T ss_pred EecCC----------------------CCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCC----------
Confidence 32221 11356899999 77766554 4667776643 2221111100
Q ss_pred ccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCc-EEEeecCccCCCCCcC
Q psy4832 401 RDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGR-MFDFAGRWQSDKKNCN 478 (770)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~-i~~~aG~~~~~~~~~~ 478 (770)
........++++++|.++++-...+. |+..+. +|. +..+.+-
T Consensus 282 ------------------------~~~~~~~~~~~s~~g~~l~~g~~d~~---i~vwd~~~~~~~~~l~~h--------- 325 (354)
T 2pbi_B 282 ------------------------SIIFGASSVDFSLSGRLLFAGYNDYT---INVWDVLKGSRVSILFGH--------- 325 (354)
T ss_dssp ------------------------TCCSCEEEEEECTTSSEEEEEETTSC---EEEEETTTCSEEEEECCC---------
T ss_pred ------------------------CcccceeEEEEeCCCCEEEEEECCCc---EEEEECCCCceEEEEECC---------
Confidence 01123578999999997777665554 555553 444 3233221
Q ss_pred CCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEE
Q psy4832 479 TTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHIL 525 (770)
Q Consensus 479 ~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~ 525 (770)
-....+|+++|||..+++-...+.|+
T Consensus 326 ---------------------~~~v~~l~~spdg~~l~sgs~D~~v~ 351 (354)
T 2pbi_B 326 ---------------------ENRVSTLRVSPDGTAFCSGSWDHTLR 351 (354)
T ss_dssp ---------------------SSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred ---------------------CCcEEEEEECCCCCEEEEEcCCCCEE
Confidence 12367899999998777655555554
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.51 Score=57.86 Aligned_cols=68 Identities=18% Similarity=0.141 Sum_probs=38.1
Q ss_pred ceEEEEcCCCC-EEEE-eC------ceEEEEcCCCcEEEEeccCccc----ccceeEEEEeCCCCcEEEEeC------CC
Q psy4832 182 PVALTSGPDGS-LYVG-DF------NLVRRLTPEGNVFTVLQLSATQ----VSYQYYLALSPADGHLYISDA------EK 243 (770)
Q Consensus 182 P~~la~~~dG~-lyv~-d~------~~I~~i~~~G~v~~~~~~~~~~----~~~p~~lav~p~~g~lyvsd~------~~ 243 (770)
...+++.|||. |.++ .. ..|+.++.++.....+...... ......++++| +|.++++.. ..
T Consensus 55 v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~Sp-Dg~ll~~~~~~~~~~~~ 133 (1045)
T 1k32_A 55 INNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIISTDAMQPFSSM 133 (1045)
T ss_dssp EEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT-TCCEEEEECTTSSSTTC
T ss_pred ccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCC-CCEEEEEECCcCCCccc
Confidence 35788999998 3333 21 2688888765443333210100 01126899998 666666544 23
Q ss_pred cEEEEEe
Q psy4832 244 HQILRVL 250 (770)
Q Consensus 244 ~~I~~i~ 250 (770)
.+|+.++
T Consensus 134 ~~l~~~~ 140 (1045)
T 1k32_A 134 TCLYRVE 140 (1045)
T ss_dssp CEEEEEE
T ss_pred ceEEEEE
Confidence 5688774
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.066 Score=62.79 Aligned_cols=99 Identities=9% Similarity=-0.065 Sum_probs=57.8
Q ss_pred CCCeEEECCCccEEecccCCCeEEEEeccCc----cCCccCCCCCcccccccccCceEEEEcCCCC-EEEEeCceEEEEc
Q psy4832 131 HEGILQKGDGSSLHLKHEFPRTVSVVMGTGL----QRPLVCKDCDGVARDARLLTPVALTSGPDGS-LYVGDFNLVRRLT 205 (770)
Q Consensus 131 ~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~----~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~-lyv~d~~~I~~i~ 205 (770)
...+...+||..+.+.. . ..|..+.-.+. ...+.. .-..+..+++.|||. |.++..+.|+.++
T Consensus 111 v~~~~~SpDg~~l~~~~-~-~~i~~~d~~~~~~~~~~~l~~----------~~~~~~~~~~SPDG~~la~~~~~~i~~~d 178 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPL-G-GELYLYDLKQEGKAAVRQLTH----------GEGFATDAKLSPKGGFVSFIRGRNLWVID 178 (741)
T ss_dssp SCCCEECTTSSEEEEEE-T-TEEEEEESSSCSTTSCCBCCC----------SSSCEEEEEECTTSSEEEEEETTEEEEEE
T ss_pred cceeEECCCCCEEEEEe-C-CcEEEEECCCCCcceEEEccc----------CCcccccccCCCCCCEEEEEeCCcEEEEe
Confidence 45677888998777665 3 66666654332 221110 012467899999998 5555556888888
Q ss_pred CCC-cEEEEeccCcc-------------cccceeEEEEeCCCCcEEEEeC
Q psy4832 206 PEG-NVFTVLQLSAT-------------QVSYQYYLALSPADGHLYISDA 241 (770)
Q Consensus 206 ~~G-~v~~~~~~~~~-------------~~~~p~~lav~p~~g~lyvsd~ 241 (770)
.++ +...+...... .+..+..++++|.+..|+++..
T Consensus 179 ~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~ 228 (741)
T 2ecf_A 179 LASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI 228 (741)
T ss_dssp TTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE
T ss_pred cCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE
Confidence 764 44433321111 0112578999996556777643
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.33 Score=55.60 Aligned_cols=100 Identities=8% Similarity=0.085 Sum_probs=51.9
Q ss_pred CceEEEEEeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEE--EeCCCCeEEEEEEccCCcEeEEEecCcEE-EEEeCCC
Q psy4832 647 RFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHI--YSPRYGKLISLVYDERGFLIFAQMFRHKY-YIATDQC 723 (770)
Q Consensus 647 g~~~~y~YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~--~~p~~g~~~~~~yd~~G~l~~~~~~~~~~-~~~~d~~ 723 (770)
+....-.+.+.|++++.-..++.+.-|...... ++... ...-.+.+....+.+.|+.++.-..+.+. .+-.+..
T Consensus 492 ~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~---~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNF---ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT---EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC---ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCc
Confidence 334445566667777666666655444433211 11110 00014567788888888877766444333 3333322
Q ss_pred CCeE-EEEcCC-CCEEEEEEeCCCCceE
Q psy4832 724 GTPV-MVFNQY-GETVREIMRSPYGHIV 749 (770)
Q Consensus 724 G~~~-~~~d~~-G~~v~~~~yd~~G~~~ 749 (770)
.... .+.... ...|..+...|-|+++
T Consensus 569 ~~~~~~~~~~h~~~~v~~v~fs~d~~l~ 596 (611)
T 1nr0_A 569 SDHPIIIKGAHAMSSVNSVIWLNETTIV 596 (611)
T ss_dssp TSCCEEETTSSTTSCEEEEEEEETTEEE
T ss_pred ccccchhhccCcccCeeEEEEcCCCEEE
Confidence 2222 344444 3457777776777744
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.22 Score=53.34 Aligned_cols=151 Identities=15% Similarity=0.015 Sum_probs=83.4
Q ss_pred eecCCCeEEECCCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCCEEEEe-C-ceEEEEc
Q psy4832 128 YNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGD-F-NLVRRLT 205 (770)
Q Consensus 128 ~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d-~-~~I~~i~ 205 (770)
++....+.+..+|..++... ..+.|....-....... ... .. ......++.++|.++++- . +.|+.++
T Consensus 56 ~~~~~~~~~s~~g~~l~~~~-~d~~v~i~d~~~~~~~~-~~~------~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd 125 (420)
T 3vl1_A 56 VDAGKGNTFEKVGSHLYKAR-LDGHDFLFNTIIRDGSK-MLK------RA--DYTAVDTAKLQMRRFILGTTEGDIKVLD 125 (420)
T ss_dssp CBCCTTCEEEEEETTEEEEE-ETTEEEEEECCSEETTT-TSC------SC--CEEEEEEECSSSCEEEEEETTSCEEEEC
T ss_pred cccccceeeeecCCeEEEEE-cCCcEEEEEecccceee-EEe------cC--CceEEEEEecCCCEEEEEECCCCEEEEe
Confidence 34566788888888777766 56666666532111100 000 00 112333566788766543 3 4788887
Q ss_pred CC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCc
Q psy4832 206 PE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNG 284 (770)
Q Consensus 206 ~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g 284 (770)
.. ++....+. ........++++| ++.++++-..++.|+.++... ...+..+.+.
T Consensus 126 ~~~~~~~~~~~---~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~-----~~~~~~~~~h---------------- 180 (420)
T 3vl1_A 126 SNFNLQREIDQ---AHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKD-----GSNPRTLIGH---------------- 180 (420)
T ss_dssp TTSCEEEEETT---SSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT-----CCCCEEEECC----------------
T ss_pred CCCcceeeecc---cccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCC-----CcCceEEcCC----------------
Confidence 65 44444432 2334568999998 666666666677887775321 1112222211
Q ss_pred ccccccccCcceEEEccCCcEEEE-eCCC-eEEECCC
Q psy4832 285 PALAAKLSHPKGLAIKADKTMFIA-DGTN-IRVVSPE 319 (770)
Q Consensus 285 ~~~~a~l~~P~gIavd~~G~lYva-D~~~-Ir~id~~ 319 (770)
-.....|++.+++.++++ .... |+..|..
T Consensus 181 ------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 211 (420)
T 3vl1_A 181 ------RATVTDIAIIDRGRNVLSASLDGTIRLWECG 211 (420)
T ss_dssp ------SSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred ------CCcEEEEEEcCCCCEEEEEcCCCcEEEeECC
Confidence 113467888888875544 3333 7777743
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.21 Score=52.52 Aligned_cols=67 Identities=21% Similarity=0.092 Sum_probs=38.4
Q ss_pred ceEEEEcCCCCEEEEeC--ceEEEEcCCCc-EEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEE
Q psy4832 182 PVALTSGPDGSLYVGDF--NLVRRLTPEGN-VFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRV 249 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~--~~I~~i~~~G~-v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i 249 (770)
-..|++.|+|.++++-. +.|+.++.++. .................++++| ++.++++-..++.|...
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDATTCIW 88 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-CCCEEEEEECCCcEEEE
Confidence 46799999998776543 46777765433 2211111012223457899998 66666665555555444
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.16 Score=54.37 Aligned_cols=151 Identities=11% Similarity=0.110 Sum_probs=83.9
Q ss_pred CceEEEEcC-CCCEEEEeC--ceEEEEcCC-C-------cEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEE
Q psy4832 181 TPVALTSGP-DGSLYVGDF--NLVRRLTPE-G-------NVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRV 249 (770)
Q Consensus 181 ~P~~la~~~-dG~lyv~d~--~~I~~i~~~-G-------~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i 249 (770)
...++++.| +++++++-. +.|+.++.. + +....+. ..-.....++++|.+.+++++-..++.|+.+
T Consensus 83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 159 (402)
T 2aq5_A 83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE---GHTKRVGIVAWHPTAQNVLLSAGCDNVILVW 159 (402)
T ss_dssp CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE---CCSSCEEEEEECSSBTTEEEEEETTSCEEEE
T ss_pred CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec---CCCCeEEEEEECcCCCCEEEEEcCCCEEEEE
Confidence 457899999 888766543 467777643 3 1122221 1224467899998444677776666777777
Q ss_pred eccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEE-EEeCCC-eEEECCC-CcEEEee
Q psy4832 250 LSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMF-IADGTN-IRVVSPE-GIIHTLI 326 (770)
Q Consensus 250 ~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lY-vaD~~~-Ir~id~~-G~i~t~~ 326 (770)
+. .++......... ..-.....|+++++|.++ .+.... |+..|.. +.....+
T Consensus 160 d~------~~~~~~~~~~~~-------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 214 (402)
T 2aq5_A 160 DV------GTGAAVLTLGPD-------------------VHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEK 214 (402)
T ss_dssp ET------TTTEEEEEECTT-------------------TCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EC------CCCCccEEEecC-------------------CCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeee
Confidence 42 223322222100 001135688999888744 444444 8888854 4433322
Q ss_pred cCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe-----CCEEEEEcC
Q psy4832 327 GHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID-----DRVIFKLTN 379 (770)
Q Consensus 327 g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D-----~~~I~~i~~ 379 (770)
..... -..+..++++| ++.++++- ++.|..++.
T Consensus 215 ~~~~~-------------------~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~ 252 (402)
T 2aq5_A 215 DRPHE-------------------GTRPVHAVFVS-EGKILTTGFSRMSERQVALWDT 252 (402)
T ss_dssp ECSSC-------------------SSSCCEEEECS-TTEEEEEEECTTCCEEEEEEET
T ss_pred ccCCC-------------------CCcceEEEEcC-CCcEEEEeccCCCCceEEEEcC
Confidence 11100 01356789998 88766653 456666664
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.059 Score=57.75 Aligned_cols=67 Identities=9% Similarity=0.036 Sum_probs=43.9
Q ss_pred CceEEEEcCCCCEEEE-eC-ceEEEEcCCC-----cEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 181 TPVALTSGPDGSLYVG-DF-NLVRRLTPEG-----NVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~-d~-~~I~~i~~~G-----~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
...++++.|+|.++++ .. +.|+.++.+. +....+. ..-.....++++|.++.++++-..++.|+.++
T Consensus 69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 142 (416)
T 2pm9_A 69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS---NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD 142 (416)
T ss_dssp CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC---CSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc---CCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence 4678999999875554 33 5788777554 2333332 12234578999985477777777777777764
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.19 Score=53.39 Aligned_cols=68 Identities=15% Similarity=0.217 Sum_probs=43.2
Q ss_pred CeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCcEE-EeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEE
Q psy4832 429 SLTALAFSPTGDLYIADIDARKVNALRVIDS-TGRMF-DFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISAL 506 (770)
Q Consensus 429 ~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~i~-~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~gi 506 (770)
...+|+++|+|.++++-...+. |+..|. +++.. ++.. + .-....+|
T Consensus 271 ~V~~~~~Spdg~~lasgs~D~~---V~iwd~~~~~~~~~~~~-g----------------------------H~~~V~~v 318 (365)
T 4h5i_A 271 GITSMDVDMKGELAVLASNDNS---IALVKLKDLSMSKIFKQ-A----------------------------HSFAITEV 318 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSC---EEEEETTTTEEEEEETT-S----------------------------SSSCEEEE
T ss_pred CeEeEEECCCCCceEEEcCCCE---EEEEECCCCcEEEEecC-c----------------------------ccCCEEEE
Confidence 3588999999997776555543 666664 55532 2211 0 01236789
Q ss_pred EEcCCCcEEEEcCCCceEEeee
Q psy4832 507 SVSPDGVVNVADQGSLHILALQ 528 (770)
Q Consensus 507 av~~dG~lyvaD~~~~~I~~i~ 528 (770)
+++|||.++++-...+.|+...
T Consensus 319 ~fSpdg~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 319 TISPDSTYVASVSAANTIHIIK 340 (365)
T ss_dssp EECTTSCEEEEEETTSEEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEEE
Confidence 9999999888765555554443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.5 Score=55.64 Aligned_cols=104 Identities=11% Similarity=-0.014 Sum_probs=57.5
Q ss_pred CeEEECCCccEEecccCCCeEEEEec-cCccCCccCCCCCcccccccccCceEEEEcCCCCEEEE-eC-ceEEEEcC-CC
Q psy4832 133 GILQKGDGSSLHLKHEFPRTVSVVMG-TGLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVG-DF-NLVRRLTP-EG 208 (770)
Q Consensus 133 gil~~~dG~~~~~~~~~~~~i~~v~g-~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~-d~-~~I~~i~~-~G 208 (770)
++...+||..+.+.. ..+.|.+..- +|..... ....-....++++.|+|..+++ .. +.|+.++. +|
T Consensus 18 ~i~~sp~~~~la~~~-~~g~v~iwd~~~~~~~~~---------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 87 (814)
T 3mkq_A 18 GIDFHPTEPWVLTTL-YSGRVEIWNYETQVEVRS---------IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (814)
T ss_dssp EEEECSSSSEEEEEE-TTSEEEEEETTTTEEEEE---------EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred EEEECCCCCEEEEEe-CCCEEEEEECCCCceEEE---------EecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 445556665555544 5555655542 2221100 0001123578899999885553 33 57888874 46
Q ss_pred cEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 209 NVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 209 ~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
+....+. ........++++| ++...++-..++.|..++
T Consensus 88 ~~~~~~~---~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~ 125 (814)
T 3mkq_A 88 EKVVDFE---AHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWN 125 (814)
T ss_dssp CEEEEEE---CCSSCEEEEEECS-SSSEEEEEETTSEEEEEE
T ss_pred cEEEEEe---cCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEE
Confidence 6655442 2234568899998 555555555566777664
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.35 Score=57.00 Aligned_cols=244 Identities=12% Similarity=0.129 Sum_probs=132.7
Q ss_pred CceEEEEcCCCCEEEEeCceEEEEcCCCcEEEEeccCcc-cc--cceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 181 TPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSAT-QV--SYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~~~I~~i~~~G~v~~~~~~~~~-~~--~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
....|+.|++|.|||+..+-|.++++.......+..... .+ .....|..+..++.|||... +-+.+++.
T Consensus 147 ~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~--~Gl~~~~~------ 218 (758)
T 3ott_A 147 TIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE--GYLFQYFP------ 218 (758)
T ss_dssp CEEEEEECTTCCEEEEETTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE--EEEEEEET------
T ss_pred eEEEEEEcCCCCEEEEeCCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC--CCCeEEcC------
Confidence 457889999999999987788889876543333322111 11 12457888853456899763 46888842
Q ss_pred CCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCCeEEECCC-CcEEEeecCCCCCCCcC
Q psy4832 258 PSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTNIRVVSPE-GIIHTLIGHHKHHNIWS 336 (770)
Q Consensus 258 ~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~Ir~id~~-G~i~t~~g~~~~~~~~~ 336 (770)
..+.+..+... .-.....|+.|++|.|||+-...+.++++. +.+..+.......
T Consensus 219 ~~~~~~~~~~l---------------------~~~~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~~~~~~~~~~~---- 273 (758)
T 3ott_A 219 STGQIKQTEAF---------------------HNNSIKSLALDGNGDLLAGTDNGLYVYHNDTTPLQHIIHDSRNI---- 273 (758)
T ss_dssp TTTEEEEEEEE---------------------EEEEEEEEEECTTCCEEEEETTEEEEECCTTSCCEEECCCTTCT----
T ss_pred CCCeEEeccCC---------------------CCCeEEEEEEcCCCCEEEEeCCceeEEecCCCcEEEEEcCCCCc----
Confidence 12333222100 001246788999999999874348888865 3454433211100
Q ss_pred CCccCCCcccccccccCcceEEEeCCCCeEEEEeCCEEEEEcCCCcEEEEecCCCCCCCCCCCCcccccccccccccccc
Q psy4832 337 PFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQ 416 (770)
Q Consensus 337 p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (770)
. ...-+....|..|. +|+|||...+-|..+..+.....+.-.....
T Consensus 274 -----~-----~l~~~~i~~i~~D~-~g~lWiGT~~Gl~~~~~~~~~~~~~~~~~~~----------------------- 319 (758)
T 3ott_A 274 -----Q-----SLTNNIIWNIFADQ-EHNIWLGTDYGISLSRYNSALQFIPISQITG----------------------- 319 (758)
T ss_dssp -----T-----SCSCSCEEEEEECT-TCCEEEEESSSEEEECCCC-CEEEEHHHHSC-----------------------
T ss_pred -----C-----cCCcCeEEEEEEcC-CCCEEEEeCCcccccccCCceeEEecccCCC-----------------------
Confidence 0 00012346788898 9999998743355444333332221000000
Q ss_pred CCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCC-C---cEEEeecCccCCCCCcCCCCCcccccCccCc
Q psy4832 417 DDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDST-G---RMFDFAGRWQSDKKNCNTTNCAEFEKNSKET 492 (770)
Q Consensus 417 ~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~-G---~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~ 492 (770)
...-....+|..|.+|.|||... +. +.++++. + .+..+.-.. ...
T Consensus 320 -------~~~~~~v~~i~~D~~g~lWiGt~-~G----l~~~~~~~~~~~~~~~~~~~~-------------------~~~ 368 (758)
T 3ott_A 320 -------TGDGNQFYSLFRDSKGFYWFGGA-NG----LIRFTDPAGERHDAIWYRMGD-------------------KTY 368 (758)
T ss_dssp -------SCCCCBEEEEEECTTCCEEEEET-TE----EEEESCTTSSCCCCEEECTTC-------------------SSS
T ss_pred -------CCCCceEEEEEEcCCCCEEEeeC-Cc----ceeecccccccceeEEeccCC-------------------cCC
Confidence 00012357899999999999964 32 4455532 2 122221000 000
Q ss_pred ccccceecCCeeEEEEcCCCcEEEEcCCCceEEeee
Q psy4832 493 LLTSTARFTSISALSVSPDGVVNVADQGSLHILALQ 528 (770)
Q Consensus 493 ~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~ 528 (770)
.+ .-+...+|+.+++|.|||+..+ .+.++.
T Consensus 369 ~l----~~~~v~~i~~d~~g~lWigt~~--GL~~~~ 398 (758)
T 3ott_A 369 PL----SHNRIRHIYEDKEQQLWIATDG--SINRYD 398 (758)
T ss_dssp CC----SCSCEEEEEECTTSCEEEEETT--EEEEEE
T ss_pred CC----CCCceEEEEECCCCCEEEEeCC--cHhhcC
Confidence 00 1134678999999999998632 444444
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0033 Score=71.34 Aligned_cols=124 Identities=22% Similarity=0.252 Sum_probs=77.6
Q ss_pred ccccCcceEEEeCCCCeEEEEeC-----------------------CEEEEEcCCCc----------EEEEecCCCCCCC
Q psy4832 349 AQLQWPTGLALSPLDDSLHFIDD-----------------------RVIFKLTNDLK----------VKIVAGIPLHCRT 395 (770)
Q Consensus 349 ~~l~~P~gla~d~~~g~lyv~D~-----------------------~~I~~i~~~G~----------v~~vaG~~~~~~~ 395 (770)
..|..|.+++++|.++.|||+-+ +.|+++.+++. +.++.|.|.....
T Consensus 381 T~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~ 460 (592)
T 3zwu_A 381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG 460 (592)
T ss_dssp CCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred EEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccc
Confidence 46889999999998899999851 46888875321 2234444332110
Q ss_pred CCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCC---------ceeeEEEEcC-CCcEEE
Q psy4832 396 GDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDAR---------KVNALRVIDS-TGRMFD 465 (770)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~---------ri~~i~~i~~-~G~i~~ 465 (770)
.. ............|..|.+|+||+.|+|||++-.+. --|.+...++ .|++..
T Consensus 461 ~~-----------------~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~r 523 (592)
T 3zwu_A 461 TP-----------------KGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRR 523 (592)
T ss_dssp SG-----------------GGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEE
T ss_pred cc-----------------cccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEE
Confidence 00 00011122345689999999999999999987542 1234566665 577777
Q ss_pred eecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCC-cEEEE
Q psy4832 466 FAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDG-VVNVA 517 (770)
Q Consensus 466 ~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG-~lyva 517 (770)
|+-.+.. .-..|++++||| .|||.
T Consensus 524 f~~~P~g----------------------------aE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 524 FMVGPIG----------------------------CEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEECCTT----------------------------CEEEEEEECTTSSEEEEE
T ss_pred EEeCCCC----------------------------ccCcCeeECCCCCEEEEE
Confidence 7643310 126789999998 56665
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.31 Score=51.64 Aligned_cols=147 Identities=7% Similarity=0.002 Sum_probs=85.5
Q ss_pred CceEEEEcC-CCCEEEE-eC-ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 181 TPVALTSGP-DGSLYVG-DF-NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 181 ~P~~la~~~-dG~lyv~-d~-~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
...++++.| ++.++++ .. +.|+.++..+.....+......-.....++++| ++.++++-..++.|+.++
T Consensus 120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d------- 191 (383)
T 3ei3_B 120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLG------- 191 (383)
T ss_dssp BEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEE-------
T ss_pred ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEE-------
Confidence 457888988 5565554 33 578888877665554432222224467999998 666666666677888874
Q ss_pred CCCc-EEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEe-CCC-eEEECCC-----CcEEEeecC
Q psy4832 258 PSIN-WEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIAD-GTN-IRVVSPE-----GIIHTLIGH 328 (770)
Q Consensus 258 ~~g~-~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD-~~~-Ir~id~~-----G~i~t~~g~ 328 (770)
.++. +..+.+. -.....|++.+++. ++++- ... |+..|.. +.+....+.
T Consensus 192 ~~~~~~~~~~~h----------------------~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 249 (383)
T 3ei3_B 192 LDGHEIFKEKLH----------------------KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPH 249 (383)
T ss_dssp TTSCEEEEEECS----------------------SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEEC
T ss_pred CCCCEEEEeccC----------------------CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecC
Confidence 3333 2222211 12356899999887 55543 333 7766632 333333321
Q ss_pred CCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe-CCEEEEEcC
Q psy4832 329 HKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID-DRVIFKLTN 379 (770)
Q Consensus 329 ~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D-~~~I~~i~~ 379 (770)
-.....++++|.++. |+.+. ++.|+.++.
T Consensus 250 ----------------------~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~ 280 (383)
T 3ei3_B 250 ----------------------EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSS 280 (383)
T ss_dssp ----------------------SSCEEEEEECTTTSCEEEEEESSSEEEEEET
T ss_pred ----------------------CCceEEEEEcCCCCCEEEEEcCCCcEEEEEC
Confidence 124568899884444 44444 467777773
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.28 Score=57.07 Aligned_cols=242 Identities=16% Similarity=0.151 Sum_probs=125.0
Q ss_pred CceEEEEcCCCCEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 181 TPVALTSGPDGSLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
...++++.|+|.+.++-. +.|+.++.. +.....+. ........++++| ++...++-..++.|+.++
T Consensus 432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~---~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd------- 500 (694)
T 3dm0_A 432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSL-DNRQIVSASRDRTIKLWN------- 500 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECT-TSSCEEEEETTSCEEEEC-------
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEe---CCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEE-------
Confidence 356889999999776543 578888754 55444432 1223457899998 666666666667777773
Q ss_pred CCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCC--cEEE-EeCCC-eEEECCC-CcEE-EeecCCCC
Q psy4832 258 PSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADK--TMFI-ADGTN-IRVVSPE-GIIH-TLIGHHKH 331 (770)
Q Consensus 258 ~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G--~lYv-aD~~~-Ir~id~~-G~i~-t~~g~~~~ 331 (770)
..+........... ..-.....+++.+++ .+++ +.... |+..|.. +... ++.+..
T Consensus 501 ~~~~~~~~~~~~~~-----------------~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~-- 561 (694)
T 3dm0_A 501 TLGECKYTISEGGE-----------------GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT-- 561 (694)
T ss_dssp TTSCEEEEECSSTT-----------------SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS--
T ss_pred CCCCcceeeccCCC-----------------CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC--
Confidence 33322221111000 011124567787765 2333 33333 7777643 3333 332221
Q ss_pred CCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcC-CCcEEEEecCCCCCCCCCCCCcccccccc
Q psy4832 332 HNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTN-DLKVKIVAGIPLHCRTGDKDKRDFKDKQS 408 (770)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~-~G~v~~vaG~~~~~~~~~~~~~~~~~~~~ 408 (770)
.....|+++| ++.++++- .+.|+..+. +++...... .
T Consensus 562 --------------------~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~--~----------------- 601 (694)
T 3dm0_A 562 --------------------GYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLE--A----------------- 601 (694)
T ss_dssp --------------------SCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECCB--C-----------------
T ss_pred --------------------CCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEec--C-----------------
Confidence 1356899999 88776654 466666663 343211110 0
Q ss_pred ccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCcEE-EeecCccCCCCCcCCCCCcccc
Q psy4832 409 KTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGRMF-DFAGRWQSDKKNCNTTNCAEFE 486 (770)
Q Consensus 409 ~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~i~-~~aG~~~~~~~~~~~~~~~~~~ 486 (770)
-.....++++|++.++++-..+. |+..+. ++.+. .+.......... +.
T Consensus 602 ------------------~~~v~~~~~sp~~~~l~~~~~~~----i~iwd~~~~~~~~~~~~~~~~~~~~-----~~--- 651 (694)
T 3dm0_A 602 ------------------NSVIHALCFSPNRYWLCAATEHG----IKIWDLESKSIVEDLKVDLKAEAEK-----AD--- 651 (694)
T ss_dssp ------------------SSCEEEEEECSSSSEEEEEETTE----EEEEETTTTEEEEEECCCCC---------------
T ss_pred ------------------CCcEEEEEEcCCCcEEEEEcCCC----EEEEECCCCCChhhhcccccccccc-----cc---
Confidence 02357899999998777765542 555554 33332 222111000000 00
Q ss_pred cCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEE
Q psy4832 487 KNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHIL 525 (770)
Q Consensus 487 ~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~ 525 (770)
...............+|+++|+|..+++-...+.|+
T Consensus 652 ---~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~ 687 (694)
T 3dm0_A 652 ---NSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIR 687 (694)
T ss_dssp ------------CCCCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ---ccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEE
Confidence 000000111122356899999998888765555554
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.27 Score=50.53 Aligned_cols=145 Identities=12% Similarity=0.065 Sum_probs=83.3
Q ss_pred CceEEEEcCCCCEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 181 TPVALTSGPDGSLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
...+|++.|+|.+.++-. +.|+.++.. +.....+.. .-.....+++.| ++++.++-...+.|+.++.
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd~------ 84 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV---TETPVRAGKFIA-RKNWIIVGSDDFRIRVFNY------ 84 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC---CSSCEEEEEEEG-GGTEEEEEETTSEEEEEET------
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeec---cCCcEEEEEEeC-CCCEEEEECCCCEEEEEEC------
Confidence 357899999998666543 578888754 544444321 112346788987 6777777667788887753
Q ss_pred CCCcE-EEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC-C-eEEECCC-C-cEEE-eecCCCC
Q psy4832 258 PSINW-EVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT-N-IRVVSPE-G-IIHT-LIGHHKH 331 (770)
Q Consensus 258 ~~g~~-~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~-~-Ir~id~~-G-~i~t-~~g~~~~ 331 (770)
.++.. ..+.+. -.....|++.+++.+.++-+. . |+..|.. + .+.. +.+..
T Consensus 85 ~~~~~~~~~~~h----------------------~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~-- 140 (304)
T 2ynn_A 85 NTGEKVVDFEAH----------------------PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE-- 140 (304)
T ss_dssp TTCCEEEEEECC----------------------SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCC--
T ss_pred CCCcEEEEEeCC----------------------CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccC--
Confidence 12322 222221 113458899998886655433 3 7777643 2 2322 22211
Q ss_pred CCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcC
Q psy4832 332 HNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTN 379 (770)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~ 379 (770)
.....++++|.++.++++- .+.|+..+.
T Consensus 141 --------------------~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~ 170 (304)
T 2ynn_A 141 --------------------HFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170 (304)
T ss_dssp --------------------SCEEEEEECTTCTTEEEEEETTSEEEEEET
T ss_pred --------------------CcEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 1346789998455655543 456666653
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=97.17 E-value=0.28 Score=50.34 Aligned_cols=146 Identities=16% Similarity=0.208 Sum_probs=80.4
Q ss_pred ceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccC
Q psy4832 223 YQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKAD 302 (770)
Q Consensus 223 ~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~ 302 (770)
....++++| ++.++++-..++.|+.++. .++........ .-.....|++.++
T Consensus 25 ~v~~~~~s~-~~~~l~s~~~dg~i~iw~~------~~~~~~~~~~~---------------------h~~~v~~~~~~~~ 76 (312)
T 4ery_A 25 AVSSVKFSP-NGEWLASSSADKLIKIWGA------YDGKFEKTISG---------------------HKLGISDVAWSSD 76 (312)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEET------TTCCEEEEECC---------------------CSSCEEEEEECTT
T ss_pred cEEEEEECC-CCCEEEEeeCCCeEEEEeC------CCcccchhhcc---------------------CCCceEEEEEcCC
Confidence 357888987 6666666555566666642 23333222210 0112457899998
Q ss_pred CcEEEEeC-CC-eEEECCC-Cc-EEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEE
Q psy4832 303 KTMFIADG-TN-IRVVSPE-GI-IHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFK 376 (770)
Q Consensus 303 G~lYvaD~-~~-Ir~id~~-G~-i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~ 376 (770)
+++.++-. .. |+..+.. +. +.++.+.. .....++++| +++++++- ++.|+.
T Consensus 77 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~----------------------~~v~~~~~~~-~~~~l~s~~~d~~i~i 133 (312)
T 4ery_A 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS----------------------NYVFCCNFNP-QSNLIVSGSFDESVRI 133 (312)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCS----------------------SCEEEEEECS-SSSEEEEEETTSCEEE
T ss_pred CCEEEEECCCCEEEEEECCCCcEEEEEcCCC----------------------CCEEEEEEcC-CCCEEEEEeCCCcEEE
Confidence 88665543 33 7777643 33 33333221 1245788888 76655543 466777
Q ss_pred EcC-CCcEE-EEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeE
Q psy4832 377 LTN-DLKVK-IVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNAL 454 (770)
Q Consensus 377 i~~-~G~v~-~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i 454 (770)
++. +++.. .+.+. -.....++++++|.++++-...+. |
T Consensus 134 wd~~~~~~~~~~~~~-------------------------------------~~~v~~~~~~~~~~~l~~~~~d~~---i 173 (312)
T 4ery_A 134 WDVKTGKCLKTLPAH-------------------------------------SDPVSAVHFNRDGSLIVSSSYDGL---C 173 (312)
T ss_dssp EETTTCCEEEEECCC-------------------------------------SSCEEEEEECTTSSEEEEEETTSC---E
T ss_pred EECCCCEEEEEecCC-------------------------------------CCcEEEEEEcCCCCEEEEEeCCCc---E
Confidence 773 34322 22110 022578999999987666655543 5
Q ss_pred EEEcC
Q psy4832 455 RVIDS 459 (770)
Q Consensus 455 ~~i~~ 459 (770)
+..+.
T Consensus 174 ~~wd~ 178 (312)
T 4ery_A 174 RIWDT 178 (312)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 55553
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.27 Score=49.91 Aligned_cols=64 Identities=16% Similarity=0.068 Sum_probs=36.6
Q ss_pred ceEEEEcCCCCEEE-EeC-ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGPDGSLYV-GDF-NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~dG~lyv-~d~-~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
..++++ +++.+++ +.. +.|+.++.+ +.....+. ..-.....++++| ++.++++-..++.|..++
T Consensus 21 v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 21 VRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVY---TGQGFLNSVCYDS-EKELLLFGGKDTMINGVP 87 (313)
T ss_dssp EEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEE---ECSSCEEEEEEET-TTTEEEEEETTSCEEEEE
T ss_pred cEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEee---cCCccEEEEEECC-CCCEEEEecCCCeEEEEE
Confidence 356677 6665444 333 466666643 44444442 1234567899998 666655555566666553
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.62 Score=54.01 Aligned_cols=109 Identities=8% Similarity=0.011 Sum_probs=58.2
Q ss_pred cceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc
Q psy4832 222 SYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA 301 (770)
Q Consensus 222 ~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~ 301 (770)
..+..++++|. +.+.++.. +.|+.++. .++....+.... ..+..++++|
T Consensus 82 ~~v~~~~~spd-~~~~~~~~--~~i~~~d~------~~~~~~~l~~~~----------------------~~~~~~~~Sp 130 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFTQ--GGLVGFDM------LARKVTYLFDTN----------------------EETASLDFSP 130 (706)
T ss_dssp CCCEEEEETTT-TEEEEEET--TEEEEEET------TTTEEEEEECCT----------------------TCCTTCEECT
T ss_pred cCceeEEECCC-CeEEEEEC--CEEEEEEC------CCCceEEccCCc----------------------ccccCCcCCC
Confidence 35789999985 77777643 67877742 234443333211 0244677888
Q ss_pred CCc-EEEEeCCCeEEECCC------CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEE
Q psy4832 302 DKT-MFIADGTNIRVVSPE------GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFI 369 (770)
Q Consensus 302 ~G~-lYvaD~~~Ir~id~~------G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~ 369 (770)
+|. |+++...+|+.++.+ |....+...+... .. .+.+..+..+..+.+++++| +|+ |+++
T Consensus 131 dG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~-----~~--~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~ 198 (706)
T 2z3z_A 131 VGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTET-----LV--YGQAVHQREFGIEKGTFWSP-KGSCLAFY 198 (706)
T ss_dssp TSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTT-----EE--ESSCCGGGCTTCCCSEEECT-TSSEEEEE
T ss_pred CCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCC-----eE--cccchhhhhcCCCceEEECC-CCCEEEEE
Confidence 886 444444447776643 4444333221110 00 00112223356678999999 775 5554
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.069 Score=53.66 Aligned_cols=147 Identities=19% Similarity=0.120 Sum_probs=82.5
Q ss_pred CceEEEEcCCCCEEE-EeCceEEEEcCCC--cEEEEeccCcccccceeEEEEeCCCCcEEEEeC---CCcEEEEEeccCC
Q psy4832 181 TPVALTSGPDGSLYV-GDFNLVRRLTPEG--NVFTVLQLSATQVSYQYYLALSPADGHLYISDA---EKHQILRVLSLES 254 (770)
Q Consensus 181 ~P~~la~~~dG~lyv-~d~~~I~~i~~~G--~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~---~~~~I~~i~~~~~ 254 (770)
...++++.|+|..++ +..+.|+.++.++ +...+.. .........++++|.+..|+++.. ...+|+.++..
T Consensus 43 ~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~-- 118 (297)
T 2ojh_A 43 LFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDT--GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPST-- 118 (297)
T ss_dssp CCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCC--TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETT--
T ss_pred ceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEecc--ccccccccceEECCCCCEEEEEEeCCCCcceEEEEECC--
Confidence 356789999998544 4446888888654 4444332 111234578999985555666553 24678877421
Q ss_pred ccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEe-CCC---eEEECCC-CcEEEeecC
Q psy4832 255 VADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIAD-GTN---IRVVSPE-GIIHTLIGH 328 (770)
Q Consensus 255 ~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD-~~~---Ir~id~~-G~i~t~~g~ 328 (770)
.+....+.. ......+++.++|. |+++. ... |+.++.+ +....+...
T Consensus 119 ----~~~~~~~~~-----------------------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 119 ----GGTPRLMTK-----------------------NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp ----CCCCEECCS-----------------------SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred ----CCceEEeec-----------------------CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence 122211110 01245678888887 55443 222 6666554 444443321
Q ss_pred CCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe----CCEEEEEcCCC
Q psy4832 329 HKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID----DRVIFKLTNDL 381 (770)
Q Consensus 329 ~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D----~~~I~~i~~~G 381 (770)
-..+..++++| ++. |+++. ..+|+.++.++
T Consensus 172 ----------------------~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~ 206 (297)
T 2ojh_A 172 ----------------------EGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDG 206 (297)
T ss_dssp ----------------------SSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTS
T ss_pred ----------------------CCccccceECC-CCCEEEEEecCCCCccEEEECCCC
Confidence 12356889999 775 66553 25788877443
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.26 Score=53.62 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=65.8
Q ss_pred ceEEEEcC-CCCEE-EEeC-ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 182 PVALTSGP-DGSLY-VGDF-NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 182 P~~la~~~-dG~ly-v~d~-~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
-.+|++.| ++++. ++.. +.|+.++.+ +....++.. ...-..-..|+++|.++.++++-..++.|+.++
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~-~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd------- 193 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG-IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD------- 193 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC-CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE-------
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc-cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee-------
Confidence 57899998 55544 4444 578888754 333332221 111223578999987888888888778887774
Q ss_pred CCCc-EEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC-C-eEEECCCC
Q psy4832 258 PSIN-WEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT-N-IRVVSPEG 320 (770)
Q Consensus 258 ~~g~-~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~-~-Ir~id~~G 320 (770)
..+. ...+...... -.....+++++++.++++-.. . |+..|.++
T Consensus 194 ~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~ 240 (435)
T 4e54_B 194 FKGNILRVFASSDTI-------------------NIWFCSLDVSASSRMVVTGDNVGNVILLNMDG 240 (435)
T ss_dssp TTSCEEEEEECCSSC-------------------SCCCCCEEEETTTTEEEEECSSSBEEEEESSS
T ss_pred ccCCceeEEeccCCC-------------------CccEEEEEECCCCCEEEEEeCCCcEeeeccCc
Confidence 3333 3333321110 112357888888886665433 2 77777665
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.43 Score=51.04 Aligned_cols=151 Identities=16% Similarity=0.177 Sum_probs=83.6
Q ss_pred ceEEEEcCCCCEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC
Q psy4832 182 PVALTSGPDGSLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP 258 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~ 258 (770)
..++++.|+|.++++-. +.|+.++.. ++....+. ..-.....++++| ++..+++-..++.|+.++. .
T Consensus 126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~---~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~------~ 195 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ---GHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDL------R 195 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTSEEEEEET------T
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc---cCCCCEEEEEEcC-CCCEEEEecCCCcEEEEEC------C
Confidence 46899999998766533 578888754 55555442 2233467899998 6666666666778877742 1
Q ss_pred CCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeC-CC-eEEECCC-CcEEEeecCCCCCCC
Q psy4832 259 SINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADG-TN-IRVVSPE-GIIHTLIGHHKHHNI 334 (770)
Q Consensus 259 ~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~-~~-Ir~id~~-G~i~t~~g~~~~~~~ 334 (770)
++........ -.....+++.+ +|.++++-. .. |+..|.. +............
T Consensus 196 ~~~~~~~~~~----------------------~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~-- 251 (393)
T 1erj_A 196 TGQCSLTLSI----------------------EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES-- 251 (393)
T ss_dssp TTEEEEEEEC----------------------SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-------
T ss_pred CCeeEEEEEc----------------------CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccC--
Confidence 2332221110 01245677877 777555533 23 7777743 4433222110000
Q ss_pred cCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcC
Q psy4832 335 WSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTN 379 (770)
Q Consensus 335 ~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~ 379 (770)
....-.....|+++| ++.++++- .+.|+..+.
T Consensus 252 ------------~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~ 285 (393)
T 1erj_A 252 ------------GTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNL 285 (393)
T ss_dssp -------------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC
T ss_pred ------------CCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEEC
Confidence 001122457899999 77755543 466666653
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.057 Score=57.60 Aligned_cols=186 Identities=16% Similarity=0.134 Sum_probs=102.3
Q ss_pred CceEEEEcCCCCEE-EEeC---ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCc
Q psy4832 181 TPVALTSGPDGSLY-VGDF---NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESV 255 (770)
Q Consensus 181 ~P~~la~~~dG~ly-v~d~---~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~ 255 (770)
....+++.|||.+. ++.. +.|+.++.. ++....+.. -.....|+++| +|.++++-.. ..+.++.
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~----~~~V~~v~fsp-dg~~l~s~s~-~~~~~~~----- 203 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET----RGEVKDLHFST-DGKVVAYITG-SSLEVIS----- 203 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC----SSCCCEEEECT-TSSEEEEECS-SCEEEEE-----
T ss_pred CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC----CCceEEEEEcc-CCceEEeccc-eeEEEEE-----
Confidence 35789999999865 4442 478888854 555544432 12357899998 7777766654 3455553
Q ss_pred cCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEe---CCC---eEEECCC-CcEEEeecC
Q psy4832 256 ADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIAD---GTN---IRVVSPE-GIIHTLIGH 328 (770)
Q Consensus 256 ~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD---~~~---Ir~id~~-G~i~t~~g~ 328 (770)
..++......-... .-.....+++.++|..+++- ... |+..+.. +........
T Consensus 204 -~~~~~~~~~~~~~~-------------------~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~ 263 (365)
T 4h5i_A 204 -TVTGSCIARKTDFD-------------------KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSK 263 (365)
T ss_dssp -TTTCCEEEEECCCC-------------------TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEE
T ss_pred -eccCcceeeeecCC-------------------CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeee
Confidence 23333221110000 00124578899998866542 221 4444422 211110000
Q ss_pred CCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEc-CCCcEE-EEecCCCCCCCCCCCCcccc
Q psy4832 329 HKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLT-NDLKVK-IVAGIPLHCRTGDKDKRDFK 404 (770)
Q Consensus 329 ~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~-~~G~v~-~vaG~~~~~~~~~~~~~~~~ 404 (770)
. ........+.|+++| +|.+.++- .+.|+.++ .+++.. .+.. .|
T Consensus 264 ~-----------------~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~--gH------------ 311 (365)
T 4h5i_A 264 Q-----------------VTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQ--AH------------ 311 (365)
T ss_dssp E-----------------EESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETT--SS------------
T ss_pred e-----------------ecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecC--cc------------
Confidence 0 000122356899999 88876654 46777777 345532 2221 01
Q ss_pred ccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCce
Q psy4832 405 DKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKV 451 (770)
Q Consensus 405 ~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri 451 (770)
-....+|+|+|+|.++++-+..+.|
T Consensus 312 ----------------------~~~V~~v~fSpdg~~laS~S~D~tv 336 (365)
T 4h5i_A 312 ----------------------SFAITEVTISPDSTYVASVSAANTI 336 (365)
T ss_dssp ----------------------SSCEEEEEECTTSCEEEEEETTSEE
T ss_pred ----------------------cCCEEEEEECCCCCEEEEEeCCCeE
Confidence 1236899999999988887766643
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.013 Score=62.21 Aligned_cols=63 Identities=10% Similarity=0.104 Sum_probs=35.2
Q ss_pred eEEEEcCCCCEEEEeC--ceEEEEcCCCc---EEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEE
Q psy4832 183 VALTSGPDGSLYVGDF--NLVRRLTPEGN---VFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRV 249 (770)
Q Consensus 183 ~~la~~~dG~lyv~d~--~~I~~i~~~G~---v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i 249 (770)
.++++.|+|.++++-. +.|+.++.+.. ....+ ...-.....++++| ++.++++-..++.|+.+
T Consensus 15 ~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~---~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 15 YEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF---SDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVY 82 (377)
T ss_dssp SCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB---CCCSSCEEEEEECT-TTCCEEEEETTSSEEEC
T ss_pred EEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE---ecCCceEEEEEEeC-CCCEEEEEeCCCeEEEE
Confidence 4577888888666542 45555554332 22222 11223457899998 55555555555566555
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.49 Score=50.61 Aligned_cols=226 Identities=15% Similarity=0.089 Sum_probs=121.8
Q ss_pred CceEEEEcCCCCEEEE-eC-ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 181 TPVALTSGPDGSLYVG-DF-NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~-d~-~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
...++++.|+|.++++ .. +.|+.++. +++....+. ..-.....++++ +.++++-..++.|..++...
T Consensus 136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~---- 205 (401)
T 4aez_A 136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA---GHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRI---- 205 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEEE---TTEEEEEETTSEEEEEETTS----
T ss_pred CEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec---CCCCceEEEEEC---CCEEEEEcCCCCEEEEeccc----
Confidence 3578899999876554 33 47777774 355555442 122334567775 34555555667777774310
Q ss_pred CCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEe-CCC-eEEECCC-CcE-EEeecCCCCCC
Q psy4832 258 PSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIAD-GTN-IRVVSPE-GII-HTLIGHHKHHN 333 (770)
Q Consensus 258 ~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD-~~~-Ir~id~~-G~i-~t~~g~~~~~~ 333 (770)
.......+.+. -....++++.+++.++++- ..+ |+..|.. +.. .++.+.
T Consensus 206 ~~~~~~~~~~~----------------------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~----- 258 (401)
T 4aez_A 206 ANHQIGTLQGH----------------------SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH----- 258 (401)
T ss_dssp SSCEEEEEECC----------------------SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCC-----
T ss_pred CcceeeEEcCC----------------------CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCC-----
Confidence 11112222221 1135688999888755553 333 7777754 332 222221
Q ss_pred CcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe----CCEEEEEcC-CCcEEEEecCCCCCCCCCCCCcccccccc
Q psy4832 334 IWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID----DRVIFKLTN-DLKVKIVAGIPLHCRTGDKDKRDFKDKQS 408 (770)
Q Consensus 334 ~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D----~~~I~~i~~-~G~v~~vaG~~~~~~~~~~~~~~~~~~~~ 408 (770)
-.....++++|.+..++++. ++.|+.++. +++.......
T Consensus 259 -----------------~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~------------------- 302 (401)
T 4aez_A 259 -----------------NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA------------------- 302 (401)
T ss_dssp -----------------SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC-------------------
T ss_pred -----------------cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC-------------------
Confidence 12356899998444576653 467777773 3443222210
Q ss_pred ccccccccCCcccccccccCCeeEEEEcCCCCEEEEeC--CCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCccc
Q psy4832 409 KTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADI--DARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEF 485 (770)
Q Consensus 409 ~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~--~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~ 485 (770)
-.....++++++|..+++-. ..+. |+..+. ++......--.
T Consensus 303 ------------------~~~v~~~~~s~~~~~l~~~~g~~dg~---i~v~~~~~~~~~~~~~~~--------------- 346 (401)
T 4aez_A 303 ------------------GSQVTSLIWSPHSKEIMSTHGFPDNN---LSIWSYSSSGLTKQVDIP--------------- 346 (401)
T ss_dssp ------------------SSCEEEEEECSSSSEEEEEECTTTCE---EEEEEEETTEEEEEEEEE---------------
T ss_pred ------------------CCcEEEEEECCCCCeEEEEeecCCCc---EEEEecCCccceeEEEec---------------
Confidence 02368899999998666632 3443 444442 33322221000
Q ss_pred ccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEee
Q psy4832 486 EKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILAL 527 (770)
Q Consensus 486 ~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i 527 (770)
..-....+++++|+|.++++-..++.|+..
T Consensus 347 ------------~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw 376 (401)
T 4aez_A 347 ------------AHDTRVLYSALSPDGRILSTAASDENLKFW 376 (401)
T ss_dssp ------------CCSSCCCEEEECTTSSEEEEECTTSEEEEE
T ss_pred ------------CCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 001235678999999876665555554433
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.59 Score=50.93 Aligned_cols=158 Identities=16% Similarity=0.123 Sum_probs=81.4
Q ss_pred ceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCC-cEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc
Q psy4832 223 YQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSI-NWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA 301 (770)
Q Consensus 223 ~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g-~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~ 301 (770)
....++++|.+..|+++-..++.|..++.. ..++ .+..+.+. ..-..+..|++++
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~----~~~~~~~~~~~~~--------------------~~~~~v~~~~~sp 159 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVD----KTSKNVLKLRKRF--------------------CFSKRPNAISIAE 159 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEEC----SSSSSCEEEEEEE--------------------ECSSCEEEEEECT
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECc----CCCCceeeeeecc--------------------cCCCCceEEEEcC
Confidence 357899998444455666666666666421 0022 22222210 0012467899999
Q ss_pred CCc-EEEEeCCC-eEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCC---CeEEEE-e-CCE
Q psy4832 302 DKT-MFIADGTN-IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLD---DSLHFI-D-DRV 373 (770)
Q Consensus 302 ~G~-lYvaD~~~-Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~---g~lyv~-D-~~~ 373 (770)
+|. |++++... |+.++.. +..... + .......-.....|+++| + +.++++ + .+.
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~--------------~---~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~ 221 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKF--------------T---QEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEH 221 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSC--------------C---CCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSC
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccc--------------c---ceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCc
Confidence 887 55555433 6666532 211000 0 000011123467899999 7 755544 4 456
Q ss_pred EEEEc-CCCc-EEEEe-cCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCc
Q psy4832 374 IFKLT-NDLK-VKIVA-GIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARK 450 (770)
Q Consensus 374 I~~i~-~~G~-v~~va-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~r 450 (770)
|+.++ ..+. +..+. + .-..+..++++ +|.++++-...+.
T Consensus 222 i~vwd~~~~~~~~~~~~~-------------------------------------h~~~v~~~~~s-d~~~l~s~~~d~~ 263 (450)
T 2vdu_B 222 IKISHYPQCFIVDKWLFG-------------------------------------HKHFVSSICCG-KDYLLLSAGGDDK 263 (450)
T ss_dssp EEEEEESCTTCEEEECCC-------------------------------------CSSCEEEEEEC-STTEEEEEESSSE
T ss_pred EEEEECCCCceeeeeecC-------------------------------------CCCceEEEEEC-CCCEEEEEeCCCe
Confidence 66665 2333 22221 1 01236889999 8887776665554
Q ss_pred eeeEEEEcC-CCcE
Q psy4832 451 VNALRVIDS-TGRM 463 (770)
Q Consensus 451 i~~i~~i~~-~G~i 463 (770)
|+..+. +|+.
T Consensus 264 ---v~vwd~~~~~~ 274 (450)
T 2vdu_B 264 ---IFAWDWKTGKN 274 (450)
T ss_dssp ---EEEEETTTCCE
T ss_pred ---EEEEECCCCcE
Confidence 555553 4553
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.98 Score=53.11 Aligned_cols=271 Identities=11% Similarity=0.050 Sum_probs=146.8
Q ss_pred CCeEEECCCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCCEEEEeCceEEEEcCCCcEE
Q psy4832 132 EGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDFNLVRRLTPEGNVF 211 (770)
Q Consensus 132 ~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~~~I~~i~~~G~v~ 211 (770)
..|+++.+| .+|+.- .. -+..+.|.-.. .+.. ... ..-..-..|..|.+|.|||+..+-+.++++.....
T Consensus 25 ~~I~qD~~G-~lWigT-~~-GL~ryDG~~~~-~~~~--~~~----~~~~~i~~i~~d~~g~lWigT~~Gl~~yd~~~~~f 94 (758)
T 3ott_A 25 SCFLQDSEG-LIWIGS-NK-GLFSYDGYSTQ-QHFT--YGE----NNNTRIYCGVIIDNTYLYMGTDNGILVYNYRADRY 94 (758)
T ss_dssp EEEEECTTS-CEEEEE-SS-CEEEECSSCEE-ECSC--TTS----TTSSCEEEEEEETTTEEEEEETTEEEEEETTTTEE
T ss_pred EEEEECCCC-CEEEEE-CC-CccccCCCceE-EEEc--cCC----CCCceEEEEEEcCCCcEEEEeCCCeEEEeCCCCEE
Confidence 456777888 466653 33 34555542211 1110 000 01123567888999999999887888998653322
Q ss_pred EEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccc
Q psy4832 212 TVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKL 291 (770)
Q Consensus 212 ~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l 291 (770)
.... .........++.+ +|.|||+... .+.+++. .++.+..+... .. + ..-
T Consensus 95 ~~~~--~~~~~~i~~i~~~--~g~lWigt~~--Gl~~~~~------~~~~~~~~~~~-~~-----------~-----l~~ 145 (758)
T 3ott_A 95 EQPE--TDFPTDVRTMALQ--GDTLWLGALN--GLYTYQL------QSRKLTSFDTR-RN-----------G-----LPN 145 (758)
T ss_dssp CCCS--CCCCSCEEEEEEE--TTEEEEEETT--EEEEEET------TTCCEEEECHH-HH-----------C-----CSC
T ss_pred ECcc--cCCCceEEEEEec--CCcEEEEcCC--cceeEeC------CCCeEEEeccC-CC-----------C-----cCC
Confidence 1110 1111122344443 7899998754 7888852 22344433110 00 0 001
Q ss_pred cCcceEEEccCCcEEEEeCCCeEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe
Q psy4832 292 SHPKGLAIKADKTMFIADGTNIRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID 370 (770)
Q Consensus 292 ~~P~gIavd~~G~lYvaD~~~Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D 370 (770)
.....|+.|++|.|||+-...|.++++. +.+..+.-... . . ..-.....|..|+.++.|||..
T Consensus 146 ~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~-~----------~-----~~~~~i~~i~~d~~~~~lWigt 209 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFEGIPLPVH-S----------S-----QSNLFVNSLLEDTTRQCVWIGT 209 (758)
T ss_dssp SCEEEEEECTTCCEEEEETTEEEEEETTTTEEEEECCCCC-T----------T-----CSSCCEEEEEEETTTTEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEeCCCHhhCccCCCceEEecCCCc-c----------c-----cccceeEEEEEECCCCEEEEEE
Confidence 2345788899999999865448888865 44443321100 0 0 0001245788887234589977
Q ss_pred CCEEEEEcCC-CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCC
Q psy4832 371 DRVIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDAR 449 (770)
Q Consensus 371 ~~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ 449 (770)
.+.++++++. +++..+...+ -.....|+.|.+|.|||+-. ++
T Consensus 210 ~~Gl~~~~~~~~~~~~~~~l~------------------------------------~~~i~~i~~d~~g~lWigT~-~G 252 (758)
T 3ott_A 210 EGYLFQYFPSTGQIKQTEAFH------------------------------------NNSIKSLALDGNGDLLAGTD-NG 252 (758)
T ss_dssp EEEEEEEETTTTEEEEEEEEE------------------------------------EEEEEEEEECTTCCEEEEET-TE
T ss_pred CCCCeEEcCCCCeEEeccCCC------------------------------------CCeEEEEEEcCCCCEEEEeC-Cc
Confidence 6678888865 4443332100 01257899999999999874 32
Q ss_pred ceeeEEEEcCC-CcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCC
Q psy4832 450 KVNALRVIDST-GRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQG 520 (770)
Q Consensus 450 ri~~i~~i~~~-G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~ 520 (770)
+..+++. +.+..+.-.... ...+. -+...+|..|.+|.|||+...
T Consensus 253 ----l~~~~~~~~~~~~~~~~~~~------------------~~~l~----~~~i~~i~~D~~g~lWiGT~~ 298 (758)
T 3ott_A 253 ----LYVYHNDTTPLQHIIHDSRN------------------IQSLT----NNIIWNIFADQEHNIWLGTDY 298 (758)
T ss_dssp ----EEEECCTTSCCEEECCCTTC------------------TTSCS----CSCEEEEEECTTCCEEEEESS
T ss_pred ----eeEEecCCCcEEEEEcCCCC------------------cCcCC----cCeEEEEEEcCCCCEEEEeCC
Confidence 5566653 444443211100 00001 134678999999999998654
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=96.96 E-value=0.43 Score=49.88 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=42.3
Q ss_pred ceEEEEcCCCCEEEEeC--ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGPDGSLYVGDF--NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~--~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
-..+++.|++.+.++-. +.|+.++. +|+....+. ..-.....++++| ++...++-...+.|+.++
T Consensus 79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~---~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd 146 (343)
T 2xzm_R 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV---GHQSEVYSVAFSP-DNRQILSAGAEREIKLWN 146 (343)
T ss_dssp EEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEE---CCCSCEEEEEECS-STTEEEEEETTSCEEEEE
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEc---CCCCcEEEEEECC-CCCEEEEEcCCCEEEEEe
Confidence 46789999998776543 57888774 466554442 1223467899998 666666655566777664
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=1.3 Score=54.12 Aligned_cols=102 Identities=8% Similarity=0.041 Sum_probs=51.2
Q ss_pred ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeC-----CCcEEEEEeccCCccCCCCcEEEEECCCccc
Q psy4832 199 NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDA-----EKHQILRVLSLESVADPSINWEVAVGSGERC 272 (770)
Q Consensus 199 ~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~-----~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~ 272 (770)
+.|+.++.+ |+...+.+ .......++++|.+..|.++.. +...|+.++. ..|....+.+....
T Consensus 33 ~~l~~~~~~gg~~~~lt~----~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~------~~g~~~~lt~~~~~- 101 (1045)
T 1k32_A 33 DDLWEHDLKSGSTRKIVS----NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG------ENGEIKRITYFSGK- 101 (1045)
T ss_dssp TEEEEEETTTCCEEEEEC----SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEET------TTTEEEECCCCCEE-
T ss_pred CcEEEEECCCCcEEEeee----CCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEEC------CCCCeEEcccCCCc-
Confidence 456666654 34444432 2234578899984444555432 3456777742 12333332221100
Q ss_pred cCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeC-C-------CeEEECCCC-cEEEe
Q psy4832 273 IPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADG-T-------NIRVVSPEG-IIHTL 325 (770)
Q Consensus 273 ~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~-~-------~Ir~id~~G-~i~t~ 325 (770)
..........+++.++|.|+++.. . .|+.++.++ ....+
T Consensus 102 --------------~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l 149 (1045)
T 1k32_A 102 --------------STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL 149 (1045)
T ss_dssp --------------EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC
T ss_pred --------------ccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEe
Confidence 001122346889999998655533 1 177777553 44443
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.15 Score=53.97 Aligned_cols=154 Identities=17% Similarity=0.170 Sum_probs=87.6
Q ss_pred CceEEEEcCCCCEEEEeC--ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 181 TPVALTSGPDGSLYVGDF--NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~--~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
.-.+|++.|+|.++++-. +.|+.++. +|+....+. ..-.....++++|.+..++++-..++.|+.++..
T Consensus 129 ~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~---~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~----- 200 (344)
T 4gqb_B 129 IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR---AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR----- 200 (344)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETT-----
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc---CcCCceEEEEecCCCCCceeeecccccccccccc-----
Confidence 347899999999776543 47888875 466655552 2233457899998666788887777777777431
Q ss_pred CCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccC-CcEEEEe-CCC-eEEECCC-C-cEEEeecCCCCC
Q psy4832 258 PSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKAD-KTMFIAD-GTN-IRVVSPE-G-IIHTLIGHHKHH 332 (770)
Q Consensus 258 ~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~-G~lYvaD-~~~-Ir~id~~-G-~i~t~~g~~~~~ 332 (770)
.+......... ..-..+..+++.++ ++++++- ... |+..|.. + .+.++.+..
T Consensus 201 -~~~~~~~~~~~-------------------~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~--- 257 (344)
T 4gqb_B 201 -CPKPASQIGCS-------------------APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHS--- 257 (344)
T ss_dssp -SSSCEEECC-----------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCS---
T ss_pred -ccceeeeeecc-------------------eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCC---
Confidence 12211111000 00113557888874 5566543 333 7777743 3 333443321
Q ss_pred CCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEe--CCEEEEEcCC-CcEEE
Q psy4832 333 NIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID--DRVIFKLTND-LKVKI 385 (770)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~~~-G~v~~ 385 (770)
.....|+++| ++ .+.++- .+.|+..+.. +++..
T Consensus 258 -------------------~~v~~v~fsp-~g~~~lasgs~D~~i~vwd~~~~~~~~ 294 (344)
T 4gqb_B 258 -------------------QCVTGLVFSP-HSVPFLASLSEDCSLAVLDSSLSELFR 294 (344)
T ss_dssp -------------------SCEEEEEECS-SSSCCEEEEETTSCEEEECTTCCEEEE
T ss_pred -------------------CCEEEEEEcc-CCCeEEEEEeCCCeEEEEECCCCcEEE
Confidence 2346889998 66 444432 5677777743 44433
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.042 Score=58.41 Aligned_cols=197 Identities=21% Similarity=0.150 Sum_probs=107.1
Q ss_pred CceEEEEcCCCCEEEEe-C-ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 181 TPVALTSGPDGSLYVGD-F-NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d-~-~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
...+|++.|+|..+++- . +.|+.++.. ++....+. ..-.....++++|.+..++++-..++.|+.++..
T Consensus 141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~---~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~----- 212 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN---AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR----- 212 (357)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTT-----
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc---CCCCCEEEEEEccCCCceeeeeccCCceEEEECC-----
Confidence 35789999999876653 3 578888754 66555552 2234467899998555677777667777766321
Q ss_pred CCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCC-cEEEE-eCCC-eEEECCC-C-cEEEeecCCCCC
Q psy4832 258 PSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADK-TMFIA-DGTN-IRVVSPE-G-IIHTLIGHHKHH 332 (770)
Q Consensus 258 ~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G-~lYva-D~~~-Ir~id~~-G-~i~t~~g~~~~~ 332 (770)
.+...... . . ...-..+..|++.|++ .++++ .... |+..|.. + .+.++.+..
T Consensus 213 -~~~~~~~~-------~---~---------~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~--- 269 (357)
T 4g56_B 213 -KPKPATRI-------D---F---------CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHS--- 269 (357)
T ss_dssp -SSSCBCBC-------C---C---------TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCS---
T ss_pred -CCceeeee-------e---e---------ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccc---
Confidence 11100000 0 0 0011235678888764 45543 3333 7777643 3 233332221
Q ss_pred CCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEE-e-CCEEEEEcCC-CcEEEEecCCCCCCCCCCCCcccccccc
Q psy4832 333 NIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFI-D-DRVIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQS 408 (770)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~-D-~~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~ 408 (770)
.....|+++| ++ .+.++ . ++.|+..+.+ +++....+.
T Consensus 270 -------------------~~v~~l~~sp-~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H------------------- 310 (357)
T 4g56_B 270 -------------------QNITGLAYSY-HSSPFLASISEDCTVAVLDADFSEVFRDLSH------------------- 310 (357)
T ss_dssp -------------------SCEEEEEECS-SSSCCEEEEETTSCEEEECTTSCEEEEECCC-------------------
T ss_pred -------------------eeEEEEEEcC-CCCCEEEEEeCCCEEEEEECCCCcEeEECCC-------------------
Confidence 1346789998 65 44443 2 5678777743 554433321
Q ss_pred ccccccccCCcccccccccCCeeEEEEcC-CCCEEEEeCCCCceeeEEEEcCCCcEEEe
Q psy4832 409 KTKKSTVQDDSVRASNMDLGSLTALAFSP-TGDLYIADIDARKVNALRVIDSTGRMFDF 466 (770)
Q Consensus 409 ~~~~~~~~~~~~~a~~~~l~~P~giavd~-~G~lyVaD~~~~ri~~i~~i~~~G~i~~~ 466 (770)
-....+|+++| ++.++++-...+.| ++..+...|+...+
T Consensus 311 ------------------~~~V~~vafsP~d~~~l~s~s~Dg~v-~iW~~~~~~~~~~~ 350 (357)
T 4g56_B 311 ------------------RDFVTGVAWSPLDHSKFTTVGWDHKV-LHHHLPSEGRTENL 350 (357)
T ss_dssp ------------------SSCEEEEEECSSSTTEEEEEETTSCE-EEEECC--------
T ss_pred ------------------CCCEEEEEEeCCCCCEEEEEcCCCeE-EEEECCCCCccccc
Confidence 02368899998 78877776655554 45555556655444
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=96.88 E-value=0.56 Score=48.96 Aligned_cols=108 Identities=9% Similarity=-0.028 Sum_probs=54.8
Q ss_pred CCeEEECCCccEEecccCCCeEEEEeccCcc-CCccCCCCCcccccccccCceEEEEcCCCCEEEEe-C-ceEEEEcC-C
Q psy4832 132 EGILQKGDGSSLHLKHEFPRTVSVVMGTGLQ-RPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGD-F-NLVRRLTP-E 207 (770)
Q Consensus 132 ~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~-~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d-~-~~I~~i~~-~ 207 (770)
..+....||..+.+.. ..+.|....-.... .... .....-....++++.|+|.++++- . +.|+.++. +
T Consensus 12 ~~~~~s~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~-------~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 12 SCHAWNKDRTQIAICP-NNHEVHIYEKSGNKWVQVH-------ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp CEEEECTTSSEEEEEC-SSSEEEEEEEETTEEEEEE-------EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred EEEEECCCCCEEEEEe-CCCEEEEEeCCCCcEEeee-------eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 4455566666555544 55566655433221 0000 000111245789999999866643 3 46776664 3
Q ss_pred CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEE
Q psy4832 208 GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRV 249 (770)
Q Consensus 208 G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i 249 (770)
++....+.. ...-.....++++| ++.++++-..++.|..+
T Consensus 84 ~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~ 123 (372)
T 1k8k_C 84 RTWKPTLVI-LRINRAARCVRWAP-NEKKFAVGSGSRVISIC 123 (372)
T ss_dssp TEEEEEEEC-CCCSSCEEEEEECT-TSSEEEEEETTSSEEEE
T ss_pred CeeeeeEEe-ecCCCceeEEEECC-CCCEEEEEeCCCEEEEE
Confidence 443333211 11223467899998 55555444444555544
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.29 Score=56.93 Aligned_cols=60 Identities=12% Similarity=-0.001 Sum_probs=35.0
Q ss_pred CceEEEEcCCCCEEEEeC-ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEe
Q psy4832 181 TPVALTSGPDGSLYVGDF-NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISD 240 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~-~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd 240 (770)
.|..+++.|||.+++++. +.|+.++.+ |+...++............++++|.+..|.++.
T Consensus 18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~ 79 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSY 79 (723)
T ss_dssp CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEE
T ss_pred cccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEe
Confidence 366778888888554433 478888754 555555532111111467899998444455553
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.14 Score=55.67 Aligned_cols=188 Identities=15% Similarity=0.136 Sum_probs=108.0
Q ss_pred CceEEEEcCCCC-EEEEeC----ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCC--CcEEEEEecc
Q psy4832 181 TPVALTSGPDGS-LYVGDF----NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAE--KHQILRVLSL 252 (770)
Q Consensus 181 ~P~~la~~~dG~-lyv~d~----~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~--~~~I~~i~~~ 252 (770)
....+++.|||. |+++.. ..|+.++.. |+...+... ......++++|.+..|+++... +..|+.++.
T Consensus 180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~----~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~- 254 (415)
T 2hqs_A 180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF----PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL- 254 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC----SSCEEEEEECTTSSEEEEEECTTSSCEEEEEET-
T ss_pred cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC----CCcccCEEEcCCCCEEEEEEecCCCceEEEEEC-
Confidence 357789999997 444433 278888864 666554431 2246789999844457756543 456888853
Q ss_pred CCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeC-C---CeEEECCC-CcEEEee
Q psy4832 253 ESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADG-T---NIRVVSPE-GIIHTLI 326 (770)
Q Consensus 253 ~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~-~---~Ir~id~~-G~i~t~~ 326 (770)
.++....+.+.. .....+++.++|. |+++.. . .|+.++.+ +.+..+.
T Consensus 255 -----~~~~~~~l~~~~----------------------~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~ 307 (415)
T 2hqs_A 255 -----ASGQIRQVTDGR----------------------SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT 307 (415)
T ss_dssp -----TTCCEEECCCCS----------------------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC
T ss_pred -----CCCCEEeCcCCC----------------------CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEe
Confidence 123333322110 1245788899987 555532 2 27777755 3433332
Q ss_pred cCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEeC----CEEEEEcCC-CcEEEEecCCCCCCCCCCCC
Q psy4832 327 GHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFIDD----RVIFKLTND-LKVKIVAGIPLHCRTGDKDK 400 (770)
Q Consensus 327 g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D~----~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~ 400 (770)
..+ .....++++| +|. |+++.. ..|+.++.+ +++..+...
T Consensus 308 ~~~----------------------~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~----------- 353 (415)
T 2hqs_A 308 WEG----------------------SQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST----------- 353 (415)
T ss_dssp CSS----------------------SEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCEEECCCS-----------
T ss_pred cCC----------------------CcccCeEECC-CCCEEEEEECcCCceEEEEEECCCCCEEEecCC-----------
Confidence 111 1345789999 775 555542 478888854 444332210
Q ss_pred ccccccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcCCCc
Q psy4832 401 RDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDSTGR 462 (770)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~~G~ 462 (770)
.....++++|+|. |+++.....+ ..|+.++.+|.
T Consensus 354 ---------------------------~~~~~~~~spdg~~l~~~s~~~~~-~~l~~~d~~g~ 388 (415)
T 2hqs_A 354 ---------------------------FLDETPSLAPNGTMVIYSSSQGMG-SVLNLVSTDGR 388 (415)
T ss_dssp ---------------------------SSCEEEEECTTSSEEEEEEEETTE-EEEEEEETTSC
T ss_pred ---------------------------CCcCCeEEcCCCCEEEEEEcCCCc-cEEEEEECCCC
Confidence 1357889999998 5555444432 35777776654
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.52 Score=47.73 Aligned_cols=184 Identities=14% Similarity=0.095 Sum_probs=95.7
Q ss_pred CceEEEEcCCCCEEEEe-C-ceEEEEcCC----CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCC
Q psy4832 181 TPVALTSGPDGSLYVGD-F-NLVRRLTPE----GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLES 254 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d-~-~~I~~i~~~----G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~ 254 (770)
....+++.|+|.++++- . +.|+.++.. ++....+. ..-.....++++ +.++++-..++.|..++
T Consensus 61 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d---- 130 (313)
T 3odt_A 61 FLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLI---GHQGNVCSLSFQ---DGVVISGSWDKTAKVWK---- 130 (313)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEEC---CCSSCEEEEEEE---TTEEEEEETTSEEEEEE----
T ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchh---hcccCEEEEEec---CCEEEEEeCCCCEEEEc----
Confidence 45788899988866543 3 355555422 22222221 122234566664 34555555566777763
Q ss_pred ccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEE-EeCCC-eEEECCCCcEEEeecCCCC
Q psy4832 255 VADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFI-ADGTN-IRVVSPEGIIHTLIGHHKH 331 (770)
Q Consensus 255 ~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYv-aD~~~-Ir~id~~G~i~t~~g~~~~ 331 (770)
.......+.+. -.....+++.+ ++++++ +.... |+..+....+..+.+..
T Consensus 131 ---~~~~~~~~~~~----------------------~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-- 183 (313)
T 3odt_A 131 ---EGSLVYNLQAH----------------------NASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIH-- 183 (313)
T ss_dssp ---TTEEEEEEECC----------------------SSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSC--
T ss_pred ---CCcEEEecccC----------------------CCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccC--
Confidence 11112222211 11234566655 555443 33333 77776444444433211
Q ss_pred CCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe-CCEEEEEcCC-CcEE-EEecCCCCCCCCCCCCcccccccc
Q psy4832 332 HNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID-DRVIFKLTND-LKVK-IVAGIPLHCRTGDKDKRDFKDKQS 408 (770)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D-~~~I~~i~~~-G~v~-~vaG~~~~~~~~~~~~~~~~~~~~ 408 (770)
-.....++++| ++.|+.+. ++.|+.++.. ++.. .+.+.
T Consensus 184 -------------------~~~i~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~------------------- 224 (313)
T 3odt_A 184 -------------------NDVVRHLAVVD-DGHFISCSNDGLIKLVDMHTGDVLRTYEGH------------------- 224 (313)
T ss_dssp -------------------SSCEEEEEEEE-TTEEEEEETTSEEEEEETTTCCEEEEEECC-------------------
T ss_pred -------------------cccEEEEEEcC-CCeEEEccCCCeEEEEECCchhhhhhhhcC-------------------
Confidence 12356788988 78866655 5678777743 4432 22211
Q ss_pred ccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCc
Q psy4832 409 KTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGR 462 (770)
Q Consensus 409 ~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~ 462 (770)
-.....++++|+|.|+.+..++ .|+..+. +++
T Consensus 225 ------------------~~~i~~~~~~~~~~l~~~~~dg----~v~iwd~~~~~ 257 (313)
T 3odt_A 225 ------------------ESFVYCIKLLPNGDIVSCGEDR----TVRIWSKENGS 257 (313)
T ss_dssp ------------------SSCEEEEEECTTSCEEEEETTS----EEEEECTTTCC
T ss_pred ------------------CceEEEEEEecCCCEEEEecCC----EEEEEECCCCc
Confidence 1236889999999777666554 3666663 454
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.18 Score=50.44 Aligned_cols=37 Identities=11% Similarity=0.207 Sum_probs=21.7
Q ss_pred CeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcEEEe
Q psy4832 429 SLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRMFDF 466 (770)
Q Consensus 429 ~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i~~~ 466 (770)
.+..++++|+|. |+++...... .+|..++. .+.+..+
T Consensus 174 ~~~~~~~s~dg~~l~~~~~~~~~-~~i~~~~~~~~~~~~~ 212 (297)
T 2ojh_A 174 RNDGPDYSPDGRWIYFNSSRTGQ-MQIWRVRVDGSSVERI 212 (297)
T ss_dssp CEEEEEECTTSSEEEEEECTTSS-CEEEEEETTSSCEEEC
T ss_pred ccccceECCCCCEEEEEecCCCC-ccEEEECCCCCCcEEE
Confidence 368899999998 5555432333 25666664 3344333
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.086 Score=54.69 Aligned_cols=65 Identities=11% Similarity=0.035 Sum_probs=38.6
Q ss_pred CceEEEEcCCCCEEEE-eC-ceEEEEcCC-Cc----EEEEeccCcccccceeEEEEeCCCCc-EEEEeCCCcEEEEEe
Q psy4832 181 TPVALTSGPDGSLYVG-DF-NLVRRLTPE-GN----VFTVLQLSATQVSYQYYLALSPADGH-LYISDAEKHQILRVL 250 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~-d~-~~I~~i~~~-G~----v~~~~~~~~~~~~~p~~lav~p~~g~-lyvsd~~~~~I~~i~ 250 (770)
...++++.|+|.++++ .. +.|+.++.+ +. .....+ .-.....++++| ++. ++++-..++.|+.++
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR----YKHPLLCCNFID-NTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE----CSSCEEEEEEEE-SSSEEEEEEETTSCEEEEC
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeee----cCCceEEEEECC-CCCcEEEEEcCCCeEEEEE
Confidence 3567888888875544 33 456665532 33 333332 223467899998 566 555555567787774
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.67 Score=48.77 Aligned_cols=65 Identities=11% Similarity=0.026 Sum_probs=43.3
Q ss_pred ceEEEEcCCCCEEEEeC--ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGPDGSLYVGDF--NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~--~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
-.++++.|+|..+++-. +.|+.++. .++....+.. .......++++| ++.++++-..++.|..++
T Consensus 67 V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~---~~~~v~~~~~sp-~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 67 VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM---PCTWVMACAYAP-SGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSSCCCEEEECT-TSSEEEEESTTSEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec---CCCCEEEEEECC-CCCEEEEeeCCCCEEEEE
Confidence 46788899988766543 47777774 4555444422 223457899998 777777777777776664
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.79 E-value=1.2 Score=51.54 Aligned_cols=187 Identities=17% Similarity=0.181 Sum_probs=102.1
Q ss_pred ceEEEEcCCC-CEEEEeC--ceEEEEcCC------CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEecc
Q psy4832 182 PVALTSGPDG-SLYVGDF--NLVRRLTPE------GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSL 252 (770)
Q Consensus 182 P~~la~~~dG-~lyv~d~--~~I~~i~~~------G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~ 252 (770)
-.+|++.+++ +++++-. +.|+.++.+ +.....+. ..-.....++++| ++.+.++-..++.|+.++.
T Consensus 385 V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~---~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~- 459 (694)
T 3dm0_A 385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT---GHSHFVEDVVLSS-DGQFALSGSWDGELRLWDL- 459 (694)
T ss_dssp EEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE---CCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-
T ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec---CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEEC-
Confidence 4677887754 6666433 466666532 22222221 1223457899997 7777777777788887753
Q ss_pred CCccCCCCcE-EEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEe-CCC-eEEECCCCcEEEeecCC
Q psy4832 253 ESVADPSINW-EVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIAD-GTN-IRVVSPEGIIHTLIGHH 329 (770)
Q Consensus 253 ~~~~~~~g~~-~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD-~~~-Ir~id~~G~i~t~~g~~ 329 (770)
.++.. ..+.+. -.....|++++++...++- ... |+..+..+.........
T Consensus 460 -----~~~~~~~~~~~h----------------------~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 512 (694)
T 3dm0_A 460 -----AAGVSTRRFVGH----------------------TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG 512 (694)
T ss_dssp -----TTTEEEEEEECC----------------------SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred -----CCCcceeEEeCC----------------------CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC
Confidence 12222 222221 1124578899888755543 333 88888655332222111
Q ss_pred CCCCCcCCCccCCCcccccccccCcceEEEeCCCC--eEEEE-e-CCEEEEEcCC-CcEE-EEecCCCCCCCCCCCCccc
Q psy4832 330 KHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD--SLHFI-D-DRVIFKLTND-LKVK-IVAGIPLHCRTGDKDKRDF 403 (770)
Q Consensus 330 ~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g--~lyv~-D-~~~I~~i~~~-G~v~-~vaG~~~~~~~~~~~~~~~ 403 (770)
.. ..-.+...++++| ++ .++++ . .+.|+..+.. ++.. .+.+.
T Consensus 513 ~~-----------------~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h-------------- 560 (694)
T 3dm0_A 513 GE-----------------GHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGH-------------- 560 (694)
T ss_dssp TT-----------------SCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTTCCEEEEECCC--------------
T ss_pred CC-----------------CCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCC--------------
Confidence 00 1122456788888 54 33343 3 4666666633 3332 22211
Q ss_pred cccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEc
Q psy4832 404 KDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVID 458 (770)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~ 458 (770)
-.....|+++|+|.++++-...+. |+..|
T Consensus 561 -----------------------~~~v~~v~~spdg~~l~sg~~Dg~---i~iwd 589 (694)
T 3dm0_A 561 -----------------------TGYVSTVAVSPDGSLCASGGKDGV---VLLWD 589 (694)
T ss_dssp -----------------------SSCEEEEEECTTSSEEEEEETTSB---CEEEE
T ss_pred -----------------------CCCEEEEEEeCCCCEEEEEeCCCe---EEEEE
Confidence 123688999999998887766654 44445
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=96.72 E-value=0.73 Score=48.08 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=41.9
Q ss_pred ceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCc-EEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc
Q psy4832 223 YQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSIN-WEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA 301 (770)
Q Consensus 223 ~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~-~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~ 301 (770)
....++++| ++.+.++-...+.|+.++. .++. +..+.+. -.....+++.+
T Consensus 78 ~V~~~~~~~-~~~~l~s~s~D~~v~lwd~------~~~~~~~~~~~h----------------------~~~v~~v~~sp 128 (343)
T 2xzm_R 78 FVSDLALSQ-ENCFAISSSWDKTLRLWDL------RTGTTYKRFVGH----------------------QSEVYSVAFSP 128 (343)
T ss_dssp CEEEEEECS-STTEEEEEETTSEEEEEET------TSSCEEEEEECC----------------------CSCEEEEEECS
T ss_pred ceEEEEECC-CCCEEEEEcCCCcEEEEEC------CCCcEEEEEcCC----------------------CCcEEEEEECC
Confidence 357899997 7777777777778877753 1232 2222221 11345789999
Q ss_pred CCcEEEE-eCCC-eEEECCCC
Q psy4832 302 DKTMFIA-DGTN-IRVVSPEG 320 (770)
Q Consensus 302 ~G~lYva-D~~~-Ir~id~~G 320 (770)
+|...++ .... |+..+..+
T Consensus 129 ~~~~l~s~~~d~~i~~wd~~~ 149 (343)
T 2xzm_R 129 DNRQILSAGAEREIKLWNILG 149 (343)
T ss_dssp STTEEEEEETTSCEEEEESSS
T ss_pred CCCEEEEEcCCCEEEEEeccC
Confidence 8875554 3333 77777654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.049 Score=61.98 Aligned_cols=185 Identities=11% Similarity=0.033 Sum_probs=93.5
Q ss_pred CCeEEECCCccEEecccCCCeEEEEec-cCccCCccCCCCCcccccccccCceEEEEcCCCCEEEEeC----c--eEEEE
Q psy4832 132 EGILQKGDGSSLHLKHEFPRTVSVVMG-TGLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDF----N--LVRRL 204 (770)
Q Consensus 132 ~gil~~~dG~~~~~~~~~~~~i~~v~g-~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~----~--~I~~i 204 (770)
..+....||..+.+.....+.+.+..- .|..+.+.. ........+++.||.-+|.++. . +|..+
T Consensus 25 ~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~---------~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 25 YSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR---------EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp EEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS---------SCCSEECEECTTCSEEEEEEECSTTSCCEEEEEE
T ss_pred heeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec---------ccccccccccCCCCeEEEEeccCCCCcceEEEEE
Confidence 445667888776554312444333321 222222210 0011234556667744565664 1 67778
Q ss_pred cC--CCcEEEEeccCcccccceeEEEEeCCCCc-EEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcC
Q psy4832 205 TP--EGNVFTVLQLSATQVSYQYYLALSPADGH-LYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCG 281 (770)
Q Consensus 205 ~~--~G~v~~~~~~~~~~~~~p~~lav~p~~g~-lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g 281 (770)
+. +|....+.. ......++++|..+. +|++...+ .+..++. ..|....+...
T Consensus 96 ~~~~~g~~~~l~~-----~~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~------~~g~~~~l~~~------------- 150 (582)
T 3o4h_A 96 NTSRPGEEQRLEA-----VKPMRILSGVDTGEAVVFTGATED-RVALYAL------DGGGLRELARL------------- 150 (582)
T ss_dssp ETTSTTCCEECTT-----SCSBEEEEEEECSSCEEEEEECSS-CEEEEEE------ETTEEEEEEEE-------------
T ss_pred eccCCCccccccC-----CCCceeeeeCCCCCeEEEEecCCC-CceEEEc------cCCcEEEeecC-------------
Confidence 77 776553321 112335577764444 45544443 3333321 12333333210
Q ss_pred CCcccccccccCcceEEEccCCcEEE-E--eCC---CeEEECC-CCcEEEeecCCCCCCCcCCCccCCCcccccccccCc
Q psy4832 282 DNGPALAAKLSHPKGLAIKADKTMFI-A--DGT---NIRVVSP-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWP 354 (770)
Q Consensus 282 ~~g~~~~a~l~~P~gIavd~~G~lYv-a--D~~---~Ir~id~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P 354 (770)
....++++|||...+ + |.. .|+.+|. .|...++.+... ..
T Consensus 151 -----------~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~----------------------~~ 197 (582)
T 3o4h_A 151 -----------PGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEG----------------------SF 197 (582)
T ss_dssp -----------SSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSC----------------------EE
T ss_pred -----------CCceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCC----------------------cc
Confidence 015788899998433 3 222 2888885 466665543211 23
Q ss_pred ceEEEeCCCCe-EEEEe-CC--EEEEEcCC-CcEE
Q psy4832 355 TGLALSPLDDS-LHFID-DR--VIFKLTND-LKVK 384 (770)
Q Consensus 355 ~gla~d~~~g~-lyv~D-~~--~I~~i~~~-G~v~ 384 (770)
..++++| +|+ |+.++ .+ .|++++.+ |+.+
T Consensus 198 ~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 198 SSASISP-GMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp EEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred ccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 6789999 776 55445 34 79999865 4554
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.17 Score=54.14 Aligned_cols=27 Identities=7% Similarity=-0.128 Sum_probs=18.8
Q ss_pred CcceEEEeCCC-CeEEEEe--CCEEEEEcCC
Q psy4832 353 WPTGLALSPLD-DSLHFID--DRVIFKLTND 380 (770)
Q Consensus 353 ~P~gla~d~~~-g~lyv~D--~~~I~~i~~~ 380 (770)
....|+++| + +.++++- ++.|+.++..
T Consensus 167 ~v~~~~~~~-~~~~~l~~~~~dg~v~iwd~~ 196 (416)
T 2pm9_A 167 EVISLAWNQ-SLAHVFASAGSSNFASIWDLK 196 (416)
T ss_dssp CCCEEEECS-SCTTEEEEESSSSCEEEEETT
T ss_pred CeeEEEeCC-CCCcEEEEEcCCCCEEEEECC
Confidence 467899999 5 6666653 5677777743
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=96.69 E-value=0.68 Score=47.30 Aligned_cols=149 Identities=13% Similarity=0.143 Sum_probs=84.1
Q ss_pred CceEEEEcCCCCEEEEeC--ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 181 TPVALTSGPDGSLYVGDF--NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~--~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
....+++.|+|+++++-. +.|+.++. +++....+. ..-.....++++| ++.++++-..++.|+.++.
T Consensus 67 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~------ 136 (312)
T 4ery_A 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK---GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV------ 136 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEECS-SSSEEEEEETTSCEEEEET------
T ss_pred ceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEc---CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEC------
Confidence 356899999998776543 47777774 455554442 1223457889998 6666666666677777743
Q ss_pred CCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEe-CCC-eEEECCC-CcE-EEeecCCCCCC
Q psy4832 258 PSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIAD-GTN-IRVVSPE-GII-HTLIGHHKHHN 333 (770)
Q Consensus 258 ~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD-~~~-Ir~id~~-G~i-~t~~g~~~~~~ 333 (770)
.++........ .-.....++++++|.++++- ... |+..|.. +.. ..+....
T Consensus 137 ~~~~~~~~~~~---------------------~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---- 191 (312)
T 4ery_A 137 KTGKCLKTLPA---------------------HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD---- 191 (312)
T ss_dssp TTCCEEEEECC---------------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSS----
T ss_pred CCCEEEEEecC---------------------CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccC----
Confidence 12222211110 00123578888888755543 333 7777743 332 2322111
Q ss_pred CcCCCccCCCcccccccccCcceEEEeCCCCeEEEE-e-CCEEEEEcC-CCc
Q psy4832 334 IWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFI-D-DRVIFKLTN-DLK 382 (770)
Q Consensus 334 ~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~-D-~~~I~~i~~-~G~ 382 (770)
-.....++++| ++..+++ . ++.|+.++. +++
T Consensus 192 -----------------~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 225 (312)
T 4ery_A 192 -----------------NPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGK 225 (312)
T ss_dssp -----------------CCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTE
T ss_pred -----------------CCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCc
Confidence 01234688998 7765444 3 577877774 344
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.021 Score=64.87 Aligned_cols=127 Identities=24% Similarity=0.416 Sum_probs=77.7
Q ss_pred cccccceeEEEEeCCCCcEEEEeCCC---------------------cEEEEEeccCCccCCC---CcEEEEE--CCCcc
Q psy4832 218 ATQVSYQYYLALSPADGHLYISDAEK---------------------HQILRVLSLESVADPS---INWEVAV--GSGER 271 (770)
Q Consensus 218 ~~~~~~p~~lav~p~~g~lyvsd~~~---------------------~~I~~i~~~~~~~~~~---g~~~~va--G~g~~ 271 (770)
++.+..|.+++++|.++.||++.+++ ++|+++..... +.. ..++.++ |....
T Consensus 380 AT~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~--d~~a~~f~w~~~v~~g~p~~ 457 (592)
T 3zwu_A 380 ATRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRD--DHASKTFAWDLFVVAGNPSV 457 (592)
T ss_dssp CCCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGG--CTTCSEEEEEEEEECCCTTT
T ss_pred eEEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCC--ccccceeEEEEEEeccCccc
Confidence 56789999999999999999997753 57888854322 111 1233332 22111
Q ss_pred ccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEe-CC------------C-eEEECCC-CcEEEeecCCCCCCCcC
Q psy4832 272 CIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIAD-GT------------N-IRVVSPE-GIIHTLIGHHKHHNIWS 336 (770)
Q Consensus 272 ~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD-~~------------~-Ir~id~~-G~i~t~~g~~~~~~~~~ 336 (770)
.......+.........|..|..|+||+.|+|||+. .. | +...++. |.+..++-...
T Consensus 458 --~~~~~~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~------ 529 (592)
T 3zwu_A 458 --HAGTPKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI------ 529 (592)
T ss_dssp --STTSGGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT------
T ss_pred --ccccccccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC------
Confidence 000000111112233468999999999999999984 31 2 5666654 77777763321
Q ss_pred CCccCCCcccccccccCcceEEEeCCCC-eEEEE
Q psy4832 337 PFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFI 369 (770)
Q Consensus 337 p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~ 369 (770)
. ...+|++++| ++ .|||.
T Consensus 530 --g------------aE~TG~~fsp-Dg~tlfvn 548 (592)
T 3zwu_A 530 --G------------CEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp --T------------CEEEEEEECT-TSSEEEEE
T ss_pred --C------------ccCcCeeECC-CCCEEEEE
Confidence 1 1467999999 65 47765
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.19 Score=53.78 Aligned_cols=118 Identities=13% Similarity=0.019 Sum_probs=63.3
Q ss_pred ceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC--CCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEc
Q psy4832 223 YQYYLALSPADGHLYISDAEKHQILRVLSLESVAD--PSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300 (770)
Q Consensus 223 ~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~--~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd 300 (770)
....++++|.++.++++-..++.|..++....... ....+..+.+ .-.....|++.
T Consensus 83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~----------------------h~~~v~~~~~~ 140 (402)
T 2aq5_A 83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG----------------------HTKRVGIVAWH 140 (402)
T ss_dssp CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC----------------------CSSCEEEEEEC
T ss_pred CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC----------------------CCCeEEEEEEC
Confidence 45789999856777777666777777643211000 0001111111 11235688999
Q ss_pred cCC-cEEEE-eCCC-eEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeE-EEEe-CCEE
Q psy4832 301 ADK-TMFIA-DGTN-IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSL-HFID-DRVI 374 (770)
Q Consensus 301 ~~G-~lYva-D~~~-Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~l-yv~D-~~~I 374 (770)
+++ +++++ .... |+..|.. +.....+.... .-.....|+++| ++.+ +.+. ++.|
T Consensus 141 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------~~~~v~~~~~~~-~~~~l~~~~~d~~i 200 (402)
T 2aq5_A 141 PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV-------------------HPDTIYSVDWSR-DGALICTSCRDKRV 200 (402)
T ss_dssp SSBTTEEEEEETTSCEEEEETTTTEEEEEECTTT-------------------CCSCEEEEEECT-TSSCEEEEETTSEE
T ss_pred cCCCCEEEEEcCCCEEEEEECCCCCccEEEecCC-------------------CCCceEEEEECC-CCCEEEEEecCCcE
Confidence 987 45554 4333 7777743 43332221000 012357899999 7764 4444 5788
Q ss_pred EEEcCC-Cc
Q psy4832 375 FKLTND-LK 382 (770)
Q Consensus 375 ~~i~~~-G~ 382 (770)
+.++.. ++
T Consensus 201 ~iwd~~~~~ 209 (402)
T 2aq5_A 201 RVIEPRKGT 209 (402)
T ss_dssp EEEETTTTE
T ss_pred EEEeCCCCc
Confidence 888843 44
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.055 Score=61.61 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=42.7
Q ss_pred ceEEEeCCCCeEEE-E-eC----CEEEEEcC-CCcEEEEecCCCCCCCCCCCCccccccccccccccccCCccccccccc
Q psy4832 355 TGLALSPLDDSLHF-I-DD----RVIFKLTN-DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDL 427 (770)
Q Consensus 355 ~gla~d~~~g~lyv-~-D~----~~I~~i~~-~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 427 (770)
..++++| +|+..+ + +. ..|+.++. +|+.+.+.+..
T Consensus 153 ~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~------------------------------------- 194 (582)
T 3o4h_A 153 FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGE------------------------------------- 194 (582)
T ss_dssp CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSS-------------------------------------
T ss_pred ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCC-------------------------------------
Confidence 5788999 786443 3 22 56888884 46655544211
Q ss_pred CCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcCC-CcEE
Q psy4832 428 GSLTALAFSPTGD-LYIADIDARKVNALRVIDST-GRMF 464 (770)
Q Consensus 428 ~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~~-G~i~ 464 (770)
.....++++|||. |+.++..+. ..|+.++.+ |+..
T Consensus 195 ~~~~~~~~SpDG~~l~~~~~~~~--~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 195 GSFSSASISPGMKVTAGLETARE--ARLVTVDPRDGSVE 231 (582)
T ss_dssp CEEEEEEECTTSCEEEEEECSSC--EEEEEECTTTCCEE
T ss_pred CccccceECCCCCEEEEccCCCe--eEEEEEcCCCCcEE
Confidence 1247889999998 554454432 357788864 4544
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=96.62 E-value=0.34 Score=51.32 Aligned_cols=125 Identities=14% Similarity=0.065 Sum_probs=64.0
Q ss_pred CcceEEEccCCcEEEEeCC-C-eEEECCC-CcE-EEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEE
Q psy4832 293 HPKGLAIKADKTMFIADGT-N-IRVVSPE-GII-HTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHF 368 (770)
Q Consensus 293 ~P~gIavd~~G~lYvaD~~-~-Ir~id~~-G~i-~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv 368 (770)
....|++.+++ ++++-.. . |+.++.. +.. ..+.+...+. ..-.....|+++| ++.+++
T Consensus 188 ~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~----------------~~~~~i~~i~~~~-~~~~l~ 249 (397)
T 1sq9_A 188 FATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMI----------------NNSNSIRSVKFSP-QGSLLA 249 (397)
T ss_dssp CCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC-------------------CCCCCEEEEEECS-STTEEE
T ss_pred CceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccc----------------ccCCccceEEECC-CCCEEE
Confidence 46789999988 5554433 3 7777754 433 2332200000 0012356899999 776555
Q ss_pred E-e-C---CEEEEEcC-CCcE-EEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCE
Q psy4832 369 I-D-D---RVIFKLTN-DLKV-KIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDL 441 (770)
Q Consensus 369 ~-D-~---~~I~~i~~-~G~v-~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~l 441 (770)
+ . + +.|+.++. +++. ..+.+.. ..... .....+.-.....++++|+|.+
T Consensus 250 ~~~~d~~~g~i~i~d~~~~~~~~~~~~~~-~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~ 305 (397)
T 1sq9_A 250 IAHDSNSFGCITLYETEFGERIGSLSVPT-HSSQA-----------------------SLGEFAHSSWVMSLSFNDSGET 305 (397)
T ss_dssp EEEEETTEEEEEEEETTTCCEEEEECBC--------------------------------CCBSBSSCEEEEEECSSSSE
T ss_pred EEecCCCCceEEEEECCCCcccceeccCc-ccccc-----------------------cccccccCCcEEEEEECCCCCE
Confidence 4 3 4 67888884 4543 3333210 00000 0000001134688999999987
Q ss_pred EEEeCCCCceeeEEEEcC-CCc
Q psy4832 442 YIADIDARKVNALRVIDS-TGR 462 (770)
Q Consensus 442 yVaD~~~~ri~~i~~i~~-~G~ 462 (770)
+++-...+. |+..+. +++
T Consensus 306 l~~~~~dg~---i~iwd~~~~~ 324 (397)
T 1sq9_A 306 LCSAGWDGK---LRFWDVKTKE 324 (397)
T ss_dssp EEEEETTSE---EEEEETTTTE
T ss_pred EEEEeCCCe---EEEEEcCCCc
Confidence 777665554 555553 343
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=1 Score=48.07 Aligned_cols=190 Identities=14% Similarity=0.106 Sum_probs=101.2
Q ss_pred ceEEEEcCCCCEEEEeC-ceEEEEc-CCCcEEEEeccCc---------------ccccceeEEEEeCCCCcEEEEeCCCc
Q psy4832 182 PVALTSGPDGSLYVGDF-NLVRRLT-PEGNVFTVLQLSA---------------TQVSYQYYLALSPADGHLYISDAEKH 244 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~-~~I~~i~-~~G~v~~~~~~~~---------------~~~~~p~~lav~p~~g~lyvsd~~~~ 244 (770)
..++++.|||.++++-. ..++.++ .+|+....+.... ..-.....++++| +|.++++-..++
T Consensus 67 V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~s~~~d~ 145 (393)
T 1erj_A 67 VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDR 145 (393)
T ss_dssp CCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEEEEEETTS
T ss_pred EEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC-CCCEEEEEcCCC
Confidence 35788899998776644 3555555 3566554432110 0111256899998 777777666667
Q ss_pred EEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeC-CC-eEEECCC-Cc
Q psy4832 245 QILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADG-TN-IRVVSPE-GI 321 (770)
Q Consensus 245 ~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~-~~-Ir~id~~-G~ 321 (770)
.|+.++. .++....... ++ -.....|++.++|...++-+ .. |+..|.. +.
T Consensus 146 ~i~iwd~------~~~~~~~~~~----------~h-----------~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~ 198 (393)
T 1erj_A 146 LIRIWDI------ENRKIVMILQ----------GH-----------EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 198 (393)
T ss_dssp CEEEEET------TTTEEEEEEC----------CC-----------SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred eEEEEEC------CCCcEEEEEc----------cC-----------CCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence 7777742 1233222211 00 11245788988887555533 33 7777743 43
Q ss_pred EEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcC-CCcEEEEecCCCCCCCCCC
Q psy4832 322 IHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTN-DLKVKIVAGIPLHCRTGDK 398 (770)
Q Consensus 322 i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~-~G~v~~vaG~~~~~~~~~~ 398 (770)
........ .....++++|.++.++++- ++.|+.++. .+.............
T Consensus 199 ~~~~~~~~----------------------~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~---- 252 (393)
T 1erj_A 199 CSLTLSIE----------------------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG---- 252 (393)
T ss_dssp EEEEEECS----------------------SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----------
T ss_pred eEEEEEcC----------------------CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCC----
Confidence 32222111 1245678887566655543 466777763 344322221100000
Q ss_pred CCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCc
Q psy4832 399 DKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARK 450 (770)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~r 450 (770)
...-....+|+++++|.++++-...+.
T Consensus 253 -------------------------~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 253 -------------------------TGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp -------------------------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred -------------------------CCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 001134688999999997776665554
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.46 Score=50.24 Aligned_cols=61 Identities=23% Similarity=0.220 Sum_probs=34.6
Q ss_pred EEcCCCC-EEE-EeC-c--eEEEEcCCC-cEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 186 TSGPDGS-LYV-GDF-N--LVRRLTPEG-NVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 186 a~~~dG~-lyv-~d~-~--~I~~i~~~G-~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
++.|||. |++ ++. + .|..++.++ +...+... .-....+++++|.+..|+++... ..|+.++
T Consensus 42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~---~~~~~~~~~~spdg~~l~~~~~~-~~l~~~d 108 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG---RGDNTFGGFLSPDDDALFYVKDG-RNLMRVD 108 (388)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS---SCBCSSSCEECTTSSEEEEEETT-TEEEEEE
T ss_pred cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC---CCCCccceEEcCCCCEEEEEeCC-CeEEEEE
Confidence 5678886 333 332 2 588888664 44433321 11112356899855567777643 5788775
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=96.58 E-value=0.59 Score=50.67 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=60.0
Q ss_pred ceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-
Q psy4832 223 YQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA- 301 (770)
Q Consensus 223 ~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~- 301 (770)
...+|+++|.+..++++-...+.|..++..... ..... +.-. ......-.....|++++
T Consensus 183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~--~~~~----------------~~~~~h~~~v~~v~~~p~ 242 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATP--KEHRV--IDAK----------------NIFTGHTAVVEDVAWHLL 242 (430)
T ss_dssp CCCCEEECTTSTTEEEEECTTSCEEEEETTSCC--BGGGE--EECS----------------EEECCCSSCEEEEEECSS
T ss_pred CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCC--CCCce--eccc----------------eeecCCCCCEeeeEEeCC
Confidence 468899998544377777777777777532100 00000 0000 00001112356889988
Q ss_pred CCcEEEEeCCC--eEEECCC-C----cEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe--C
Q psy4832 302 DKTMFIADGTN--IRVVSPE-G----IIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID--D 371 (770)
Q Consensus 302 ~G~lYvaD~~~--Ir~id~~-G----~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D--~ 371 (770)
++.++++.... |+..|.. + .+..+.+ .-..+..|+++| ++. ++++- +
T Consensus 243 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~----------------------~~~~v~~i~~~p-~~~~~l~tg~~d 299 (430)
T 2xyi_A 243 HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA----------------------HTAEVNCLSFNP-YSEFILATGSAD 299 (430)
T ss_dssp CTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC----------------------CSSCEEEEEECS-SCTTEEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEECCCCCCCcceeEeec----------------------CCCCeEEEEeCC-CCCCEEEEEeCC
Confidence 56677665433 7777643 1 1111111 112467899999 654 66554 4
Q ss_pred CEEEEEcC
Q psy4832 372 RVIFKLTN 379 (770)
Q Consensus 372 ~~I~~i~~ 379 (770)
+.|..++.
T Consensus 300 g~v~vwd~ 307 (430)
T 2xyi_A 300 KTVALWDL 307 (430)
T ss_dssp SEEEEEET
T ss_pred CeEEEEeC
Confidence 67777764
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.94 Score=47.16 Aligned_cols=67 Identities=9% Similarity=-0.026 Sum_probs=37.7
Q ss_pred CceEEEEcCCCCEEEEe-C-ceEEEEcCC---CcEEEEeccCcccccceeEEEEeCC-CCcEEEEeCCCcEEEEEe
Q psy4832 181 TPVALTSGPDGSLYVGD-F-NLVRRLTPE---GNVFTVLQLSATQVSYQYYLALSPA-DGHLYISDAEKHQILRVL 250 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d-~-~~I~~i~~~---G~v~~~~~~~~~~~~~p~~lav~p~-~g~lyvsd~~~~~I~~i~ 250 (770)
...++++.|+|.++++- . +.|+.++.+ ++....+. ..-.....|++++. ++.++++-..++.|+.++
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT---GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC---CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec---CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence 34678888988865543 3 456666543 23333331 12234578888753 266666655556666554
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.93 Score=46.82 Aligned_cols=68 Identities=4% Similarity=-0.053 Sum_probs=39.0
Q ss_pred CceEEEEcCCCC-EEEEe-----CceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCC--CcEEEEeCCCcEEEEEe
Q psy4832 181 TPVALTSGPDGS-LYVGD-----FNLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPAD--GHLYISDAEKHQILRVL 250 (770)
Q Consensus 181 ~P~~la~~~dG~-lyv~d-----~~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~--g~lyvsd~~~~~I~~i~ 250 (770)
...++++.|+|. ++++- .+.|+.++.+ ++....... ........++++|.. +.++++-..++.|..++
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 96 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI--EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN 96 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE--EESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee--cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence 346788899885 43333 3466666643 444433221 122345788999853 56555555567777774
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=96.49 E-value=1.1 Score=47.22 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=41.4
Q ss_pred CeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCcE-EEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEE
Q psy4832 429 SLTALAFSPTGDLYIADIDARKVNALRVIDS-TGRM-FDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISAL 506 (770)
Q Consensus 429 ~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~i-~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~gi 506 (770)
....|+++|+|.++++-........|+..+. +++. ..+.+...... ......+.-.....+
T Consensus 235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~v~~~ 297 (397)
T 1sq9_A 235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ-----------------ASLGEFAHSSWVMSL 297 (397)
T ss_dssp CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-------------------------CCBSBSSCEEEE
T ss_pred ccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccc-----------------ccccccccCCcEEEE
Confidence 3688999999987666554411113666663 4443 33332110000 000000012346788
Q ss_pred EEcCCCcEEEEcCCCceEEee
Q psy4832 507 SVSPDGVVNVADQGSLHILAL 527 (770)
Q Consensus 507 av~~dG~lyvaD~~~~~I~~i 527 (770)
+++|+|.++++-..++.|+..
T Consensus 298 ~~~~~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 298 SFNDSGETLCSAGWDGKLRFW 318 (397)
T ss_dssp EECSSSSEEEEEETTSEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEE
Confidence 999988776665555555444
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=96.39 E-value=1.1 Score=46.20 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=61.1
Q ss_pred ceEEEEcCCC-CEEEEeC--ceEEEEcCC--C----cEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEecc
Q psy4832 182 PVALTSGPDG-SLYVGDF--NLVRRLTPE--G----NVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSL 252 (770)
Q Consensus 182 P~~la~~~dG-~lyv~d~--~~I~~i~~~--G----~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~ 252 (770)
..+|++.|++ +++++-. +.|+.++.. . .....+. ..-.....++++| ++.+.++-...+.|+.++.
T Consensus 20 V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~---~h~~~v~~~~~s~-dg~~l~s~s~D~~v~~wd~- 94 (319)
T 3frx_A 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK---GHSHIVQDCTLTA-DGAYALSASWDKTLRLWDV- 94 (319)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE---CCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-
T ss_pred EEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe---CCcccEEEEEECC-CCCEEEEEeCCCEEEEEEC-
Confidence 3567777744 5555432 345554422 1 1112221 1223356789997 7777777777788887753
Q ss_pred CCccCCCCc-EEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeC-CC-eEEECCCCc-EEEeec
Q psy4832 253 ESVADPSIN-WEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADG-TN-IRVVSPEGI-IHTLIG 327 (770)
Q Consensus 253 ~~~~~~~g~-~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~-~~-Ir~id~~G~-i~t~~g 327 (770)
.++. +..+.+. -.....|++++++.+.++-+ .. |+..+..+. +.++.+
T Consensus 95 -----~~~~~~~~~~~h----------------------~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~ 146 (319)
T 3frx_A 95 -----ATGETYQRFVGH----------------------KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLG 146 (319)
T ss_dssp -----TTTEEEEEEECC----------------------SSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECC
T ss_pred -----CCCCeeEEEccC----------------------CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 2233 2223221 11245788998888666543 33 888776653 444443
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.56 Score=53.90 Aligned_cols=162 Identities=12% Similarity=0.067 Sum_probs=91.3
Q ss_pred CceEEEEcCCCC-EEEEe-C----------ceEEEEcCCC-------cEEEEeccCcccccceeEEEEeCCCCcEEEEeC
Q psy4832 181 TPVALTSGPDGS-LYVGD-F----------NLVRRLTPEG-------NVFTVLQLSATQVSYQYYLALSPADGHLYISDA 241 (770)
Q Consensus 181 ~P~~la~~~dG~-lyv~d-~----------~~I~~i~~~G-------~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~ 241 (770)
.+..+++.|||. |+++. . ..|++++.++ ....+.. ........++++|.+..|+++..
T Consensus 131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~SpDG~~la~~~~ 207 (662)
T 3azo_A 131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD---DAHRFVTGPRLSPDGRQAVWLAW 207 (662)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC---SCSSEECCCEECTTSSEEEEEEE
T ss_pred cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe---cCCCcccCceECCCCCEEEEEEC
Confidence 457889999997 44433 2 3788888766 3333320 12234567889985556766653
Q ss_pred CC-------cEEEEEeccCCccCCCC---cEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeC-
Q psy4832 242 EK-------HQILRVLSLESVADPSI---NWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADG- 310 (770)
Q Consensus 242 ~~-------~~I~~i~~~~~~~~~~g---~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~- 310 (770)
.. ..|+.++. +.+| ....+.... -..+..+++.++|.||++..
T Consensus 208 ~~~~~~~~~~~i~~~d~-----~~~g~~~~~~~l~~~~---------------------~~~~~~~~~spdg~l~~~~~~ 261 (662)
T 3azo_A 208 DHPRMPWEGTELKTARV-----TEDGRFADTRTLLGGP---------------------EEAIAQAEWAPDGSLIVATDR 261 (662)
T ss_dssp CTTCCTTTCEEEEEEEE-----CTTSCEEEEEEEEEET---------------------TBCEEEEEECTTSCEEEEECT
T ss_pred CCCCCCCCCcEEEEEEE-----CCCCcccccEEeCCCC---------------------CceEcceEECCCCeEEEEECC
Confidence 32 57877753 1124 333333210 01355788999998776542
Q ss_pred C---CeEEECC-CCcEEEeecCCCCCCCcCCCccCCCccccccccc-CcceEEEeCCCCeEEEEe---CCEEEEEcCC-C
Q psy4832 311 T---NIRVVSP-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQ-WPTGLALSPLDDSLHFID---DRVIFKLTND-L 381 (770)
Q Consensus 311 ~---~Ir~id~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~-~P~gla~d~~~g~lyv~D---~~~I~~i~~~-G 381 (770)
. +|++++. .|....+....... ..| ... ....+++.+ ++.++++- ..+|++++.+ +
T Consensus 262 ~~~~~l~~~~~~~~~~~~l~~~~~~~--~~p------------~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~d~~~~ 326 (662)
T 3azo_A 262 TGWWNLHRVDPATGAATQLCRREEEF--AGP------------LWTPGMRWFAPLA-NGLIAVVHGKGAAVLGILDPESG 326 (662)
T ss_dssp TSSCEEEEECTTTCCEEESSCCSSBS--SCC------------CCSTTCCSEEECT-TSCEEEEEBSSSCEEEEEETTTT
T ss_pred CCCeEEEEEECCCCceeecccccccc--cCc------------cccccCceEeEeC-CCEEEEEEEcCccEEEEEECCCC
Confidence 2 3888886 56666665422110 000 000 134688888 78877764 3578888865 4
Q ss_pred cEEEE
Q psy4832 382 KVKIV 386 (770)
Q Consensus 382 ~v~~v 386 (770)
.++.+
T Consensus 327 ~~~~l 331 (662)
T 3azo_A 327 ELVDA 331 (662)
T ss_dssp EEEEC
T ss_pred cEEEe
Confidence 54443
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=96.34 E-value=1.4 Score=47.57 Aligned_cols=151 Identities=10% Similarity=0.082 Sum_probs=83.4
Q ss_pred CceEEEEcCCCC-EEEEeC--ceEEEEcCCC-----cEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEecc
Q psy4832 181 TPVALTSGPDGS-LYVGDF--NLVRRLTPEG-----NVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSL 252 (770)
Q Consensus 181 ~P~~la~~~dG~-lyv~d~--~~I~~i~~~G-----~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~ 252 (770)
.+.+|++.|++. ++++-. +.|+.++.+. ........-...-.....++++|.++.++++...++.|+.++..
T Consensus 183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~ 262 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 262 (430)
T ss_dssp CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 457899999877 555443 4677776543 11111100012233468899998788899888888888888532
Q ss_pred CCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEe-CCC-eEEECCCC---cEEEee
Q psy4832 253 ESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIAD-GTN-IRVVSPEG---IIHTLI 326 (770)
Q Consensus 253 ~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD-~~~-Ir~id~~G---~i~t~~ 326 (770)
.. .....+..+.. .-..+..|++.+++. ++++- ... |+..|... .+.++.
T Consensus 263 ~~--~~~~~~~~~~~----------------------~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~ 318 (430)
T 2xyi_A 263 NN--NTSKPSHTVDA----------------------HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE 318 (430)
T ss_dssp CS--CSSSCSEEEEC----------------------CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE
T ss_pred CC--CCCcceeEeec----------------------CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee
Confidence 11 00001111111 112467899999876 56543 333 77776432 233332
Q ss_pred cCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEe--CCEEEEEc
Q psy4832 327 GHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID--DRVIFKLT 378 (770)
Q Consensus 327 g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~ 378 (770)
+. -.....|+++| ++ .++++- .+.|..++
T Consensus 319 ~h----------------------~~~v~~i~~sp-~~~~~l~s~~~d~~i~iwd 350 (430)
T 2xyi_A 319 SH----------------------KDEIFQVQWSP-HNETILASSGTDRRLHVWD 350 (430)
T ss_dssp CC----------------------SSCEEEEEECS-SCTTEEEEEETTSCCEEEE
T ss_pred cC----------------------CCCEEEEEECC-CCCCEEEEEeCCCcEEEEe
Confidence 21 12356899999 66 566654 35555554
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=96.25 E-value=1.3 Score=45.51 Aligned_cols=67 Identities=10% Similarity=0.004 Sum_probs=41.6
Q ss_pred CceEEEEcCCCC--EEEEeC-ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 181 TPVALTSGPDGS--LYVGDF-NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 181 ~P~~la~~~dG~--lyv~d~-~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
....+++.|+|. |+.+.. +.|+.++. +......+.. ...-.....++++| +.++++-..++.|+.++
T Consensus 58 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd 128 (342)
T 1yfq_A 58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTN-NEANLGICRICKYG--DDKLIAASWDGLIEVID 128 (342)
T ss_dssp CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBS-CCCCSCEEEEEEET--TTEEEEEETTSEEEEEC
T ss_pred ceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccc-cCCCCceEEEEeCC--CCEEEEEcCCCeEEEEc
Confidence 457889999998 555554 58888886 5433333311 00223457899998 55555555667777774
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=96.24 E-value=1.3 Score=45.40 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=36.7
Q ss_pred CceEEEEcCCCCEEEEe-C-ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEE
Q psy4832 181 TPVALTSGPDGSLYVGD-F-NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRV 249 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d-~-~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i 249 (770)
...++++.|+|.++++- . +.|+.++.......... .........+.+.+ .+.++++-..++.+..+
T Consensus 88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~ 155 (340)
T 4aow_A 88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF--VGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLW 155 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--ECCSSCEEEEEECT-TSSCEEEEETTSCEEEE
T ss_pred CEEEEEECCCCCEEEEEcccccceEEeecccceeeee--cCCCCceeEEEEee-cCccceeecCCCeEEEE
Confidence 45788999999866643 3 46777765543332221 11223345566665 45555554445556555
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=96.16 E-value=1.4 Score=44.93 Aligned_cols=67 Identities=6% Similarity=-0.060 Sum_probs=39.4
Q ss_pred CceEEEEcCCCCEEEEe-C-ceEEEEcCC-C----cEEEEeccCcccccceeEEEEeCC-CCcEEEEeCCCcEEEEEe
Q psy4832 181 TPVALTSGPDGSLYVGD-F-NLVRRLTPE-G----NVFTVLQLSATQVSYQYYLALSPA-DGHLYISDAEKHQILRVL 250 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d-~-~~I~~i~~~-G----~v~~~~~~~~~~~~~p~~lav~p~-~g~lyvsd~~~~~I~~i~ 250 (770)
...+|++.|+|.++++- . +.|+.++.+ + +....+. ..-.....++++|. ++.++++-..++.|+.++
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR---AHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE---CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec---cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 35778899999865543 3 466666543 2 1222221 12334678999874 366666666666666654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.02 E-value=2.1 Score=48.21 Aligned_cols=162 Identities=10% Similarity=0.011 Sum_probs=85.0
Q ss_pred cCceEEEEcCCCCEEE-EeC-ceEEEEcCCCcEEEEeccCccc--ccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCc
Q psy4832 180 LTPVALTSGPDGSLYV-GDF-NLVRRLTPEGNVFTVLQLSATQ--VSYQYYLALSPADGHLYISDAEKHQILRVLSLESV 255 (770)
Q Consensus 180 ~~P~~la~~~dG~lyv-~d~-~~I~~i~~~G~v~~~~~~~~~~--~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~ 255 (770)
....++++.|+|.... +.. +.|+.++.++ ....+. .... -..-..++++| +|.+..+-...+.|..++...+.
T Consensus 86 ~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~ 162 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRKNS 162 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCCCT
T ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCc
Confidence 3468899999998554 444 3677776555 222232 1110 12356899999 55544454556777766432110
Q ss_pred c-CCC-CcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECCCC-cE----EEeec
Q psy4832 256 A-DPS-INWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSPEG-II----HTLIG 327 (770)
Q Consensus 256 ~-~~~-g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~~G-~i----~t~~g 327 (770)
. .+. ..+..+-+... .....-..|++.|+| |..+...+ |+..+.++ .+ .++.+
T Consensus 163 l~~~~~i~l~ti~~~~~------------------gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~ 223 (588)
T 2j04_A 163 ENTPEFYFESSIRLSDA------------------GSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQN 223 (588)
T ss_dssp TTCCCCEEEEEEECSCT------------------TCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEEC
T ss_pred cccccceeeeeeecccc------------------cccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecc
Confidence 0 000 01222211100 012356789999999 55555555 88887654 21 22321
Q ss_pred CCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeCCEEEEEcCC-CcEEEE
Q psy4832 328 HHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFKLTND-LKVKIV 386 (770)
Q Consensus 328 ~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~~~I~~i~~~-G~v~~v 386 (770)
.. -....++++. +..|-.+..+.|...+.. ++....
T Consensus 224 ~h---------------------~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~ 260 (588)
T 2j04_A 224 AS---------------------RRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSL 260 (588)
T ss_dssp CC---------------------SSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEE
T ss_pred cc---------------------cCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEE
Confidence 11 0135577887 455555556788888855 444333
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=96.01 E-value=2.7 Score=47.07 Aligned_cols=99 Identities=10% Similarity=0.075 Sum_probs=64.0
Q ss_pred CCceEEEEEeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEEEeCCCCeEEEEEEcc----------CCcEeEEEecCcE
Q psy4832 646 GRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLISLVYDE----------RGFLIFAQMFRHK 715 (770)
Q Consensus 646 ~g~~~~y~YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~~~p~~g~~~~~~yd~----------~G~l~~~~~~~~~ 715 (770)
.+....-.+.+.|++++.-..+|.+.-|.... ...+......-.+....+.+.+ .|++++.-..+.+
T Consensus 488 ~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~ 564 (615)
T 1pgu_A 488 RAKPSYISISPSETYIAAGDVMGKILLYDLQS---REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 564 (615)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC
T ss_pred cCceEEEEECCCCCEEEEcCCCCeEEEeeCCC---CcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCc
Confidence 44566778888899988888888665555432 2122222221256788899988 8888887755544
Q ss_pred EEEE-eCCCCCeEEEEcCCCCEEEEEEeCCCCc
Q psy4832 716 YYIA-TDQCGTPVMVFNQYGETVREIMRSPYGH 747 (770)
Q Consensus 716 ~~~~-~d~~G~~~~~~d~~G~~v~~~~yd~~G~ 747 (770)
.++. .+..+.++.........|..+...+.|+
T Consensus 565 i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 597 (615)
T 1pgu_A 565 IFIYSVKRPMKIIKALNAHKDGVNNLLWETPST 597 (615)
T ss_dssp EEEEESSCTTCCEEETTSSTTCEEEEEEEETTE
T ss_pred EEEEECCCCceechhhhcCccceEEEEEcCCCC
Confidence 4333 3443467777776666678888877787
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.96 E-value=1.2 Score=47.97 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=39.2
Q ss_pred CcceEEEccCCcEEEEeCCC-eEEECCC--CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEE
Q psy4832 293 HPKGLAIKADKTMFIADGTN-IRVVSPE--GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHF 368 (770)
Q Consensus 293 ~P~gIavd~~G~lYvaD~~~-Ir~id~~--G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv 368 (770)
....|++.++|.++++-... |+..|.. +....++...... ....-.....++++| ++ ++++
T Consensus 179 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~--------------~~~~~~~v~~~~~~p-~~~~~l~ 243 (447)
T 3dw8_B 179 HINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPAN--------------MEELTEVITAAEFHP-NSCNTFV 243 (447)
T ss_dssp CCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSS--------------GGGCCCCEEEEEECS-SCTTEEE
T ss_pred ceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeeccccc--------------ccccCcceEEEEECC-CCCcEEE
Confidence 45689999999876664333 7777755 3222222110000 001122467899999 66 6555
Q ss_pred Ee--CCEEEEEc
Q psy4832 369 ID--DRVIFKLT 378 (770)
Q Consensus 369 ~D--~~~I~~i~ 378 (770)
+- .+.|+.++
T Consensus 244 s~~~dg~i~iwd 255 (447)
T 3dw8_B 244 YSSSKGTIRLCD 255 (447)
T ss_dssp EEETTSCEEEEE
T ss_pred EEeCCCeEEEEE
Confidence 43 46666666
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.86 E-value=2 Score=44.49 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=39.0
Q ss_pred ceEEEEcCC--CCEEEE-eC-ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCC-CcEEEEeCCCcEEEEEec
Q psy4832 182 PVALTSGPD--GSLYVG-DF-NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPAD-GHLYISDAEKHQILRVLS 251 (770)
Q Consensus 182 P~~la~~~d--G~lyv~-d~-~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~-g~lyvsd~~~~~I~~i~~ 251 (770)
..+|++.++ +.++++ .. +.|+.++.+ ++...+... .........++++|.+ +.++++-..++.|..++.
T Consensus 58 v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~ 132 (379)
T 3jrp_A 58 VWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF 132 (379)
T ss_dssp EEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred EEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEec
Confidence 467777765 665554 33 466666643 432222111 1223456789999842 666666666677777753
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=95.81 E-value=2.4 Score=44.84 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=19.4
Q ss_pred ceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 223 YQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 223 ~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
..+.++++| ++.++++-...+.|+.++
T Consensus 68 ~V~~~~~sp-~~~~l~s~s~D~~v~iWd 94 (380)
T 3iz6_a 68 KVYSLDWTP-EKNWIVSASQDGRLIVWN 94 (380)
T ss_dssp CEEEEEECT-TSSCEEEEETTSEEEEEE
T ss_pred EEEEEEEcC-CCCEEEEEeCCCeEEEEE
Confidence 356888998 666666666677887775
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=95.80 E-value=2.5 Score=44.91 Aligned_cols=146 Identities=16% Similarity=0.016 Sum_probs=74.8
Q ss_pred ceEEEEcCCCCE-EEEeC-ceEEEEcCCCcEE-EEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC
Q psy4832 182 PVALTSGPDGSL-YVGDF-NLVRRLTPEGNVF-TVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP 258 (770)
Q Consensus 182 P~~la~~~dG~l-yv~d~-~~I~~i~~~G~v~-~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~ 258 (770)
...+++.|+|.. +.+.. +.|+.++...... ..+ .......-.++++ ++.++++-..++.|..++. .
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~----~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~------~ 127 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML----KRADYTAVDTAKL-QMRRFILGTTEGDIKVLDS------N 127 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTS----CSCCEEEEEEECS-SSCEEEEEETTSCEEEECT------T
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEE----ecCCceEEEEEec-CCCEEEEEECCCCEEEEeC------C
Confidence 445778887764 44433 4677776442211 111 0111222334555 6666666666677776632 1
Q ss_pred CCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEE-eCCC-eEEECCC-C-cEEEeecCCCCCCC
Q psy4832 259 SINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIA-DGTN-IRVVSPE-G-IIHTLIGHHKHHNI 334 (770)
Q Consensus 259 ~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYva-D~~~-Ir~id~~-G-~i~t~~g~~~~~~~ 334 (770)
.+....... ..-.....|++.+++.+.++ .... |+..+.. + .+.++.+.
T Consensus 128 ~~~~~~~~~---------------------~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h------ 180 (420)
T 3vl1_A 128 FNLQREIDQ---------------------AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH------ 180 (420)
T ss_dssp SCEEEEETT---------------------SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC------
T ss_pred Ccceeeecc---------------------cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC------
Confidence 222211110 01123568899998875544 3333 7777643 3 33333322
Q ss_pred cCCCccCCCcccccccccCcceEEEeCCCCeEEEE-e-CCEEEEEcC-CCc
Q psy4832 335 WSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFI-D-DRVIFKLTN-DLK 382 (770)
Q Consensus 335 ~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~-D-~~~I~~i~~-~G~ 382 (770)
-.....++++| ++.++++ . .+.|+.++. .++
T Consensus 181 ----------------~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 181 ----------------RATVTDIAIID-RGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp ----------------SSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTE
T ss_pred ----------------CCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCc
Confidence 12356899999 7764444 4 466777773 344
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.77 E-value=2.3 Score=44.31 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=18.8
Q ss_pred ceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 223 YQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 223 ~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
..+.|+++| +|.+.++-..++.|+.++
T Consensus 18 ~v~~l~~sp-~g~~las~~~D~~i~iw~ 44 (345)
T 3fm0_A 18 RCWFLAWNP-AGTLLASCGGDRRIRIWG 44 (345)
T ss_dssp CEEEEEECT-TSSCEEEEETTSCEEEEE
T ss_pred cEEEEEECC-CCCEEEEEcCCCeEEEEE
Confidence 356899998 677777666666666653
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.76 E-value=2.7 Score=45.01 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=19.1
Q ss_pred CcceEEEeCCCCeEEEE-eCCEEEEEcCC
Q psy4832 353 WPTGLALSPLDDSLHFI-DDRVIFKLTND 380 (770)
Q Consensus 353 ~P~gla~d~~~g~lyv~-D~~~I~~i~~~ 380 (770)
....|+++| ++.++++ +.+.|+..+..
T Consensus 179 ~v~~~~~~~-~~~~l~s~~d~~i~iwd~~ 206 (447)
T 3dw8_B 179 HINSISINS-DYETYLSADDLRINLWHLE 206 (447)
T ss_dssp CCCEEEECT-TSSEEEEECSSEEEEEETT
T ss_pred ceEEEEEcC-CCCEEEEeCCCeEEEEECC
Confidence 467899999 7775554 35677777755
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=95.61 E-value=3.4 Score=47.70 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=33.6
Q ss_pred CcceEEEccCCcEEEEeCC-CeEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEE
Q psy4832 293 HPKGLAIKADKTMFIADGT-NIRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFI 369 (770)
Q Consensus 293 ~P~gIavd~~G~lYvaD~~-~Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~ 369 (770)
.+..+++.++|.+.+++.. .|+..+.. |....++..... .-.....++++| +|+ |.++
T Consensus 18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~------------------~~~~v~~~~~Sp-Dg~~l~~~ 78 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKI------------------ESLRAIRYEISP-DREYALFS 78 (723)
T ss_dssp CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTT------------------TTTTCSEEEECT-TSSEEEEE
T ss_pred cccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccc------------------cccccceEEECC-CCCEEEEE
Confidence 4677888888885444332 38887754 444444422110 001467899999 887 4444
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.37 Score=52.33 Aligned_cols=112 Identities=16% Similarity=0.118 Sum_probs=62.6
Q ss_pred eeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCc-EEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-
Q psy4832 224 QYYLALSPADGHLYISDAEKHQILRVLSLESVADPSIN-WEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA- 301 (770)
Q Consensus 224 p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~-~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~- 301 (770)
-+.|+++|.++++.++-..++.|+.++.. .+. ...+...+ + -..-.+|++.|
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~------~~~~~~~~~~~g---------H-----------~~~V~~l~f~p~ 175 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFG------IKDKPTFIKGIG---------A-----------GGSITGLKFNPL 175 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEEEECSS------CCSCCEEECCCS---------S-----------SCCCCEEEECSS
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEEECC------CCCceeEEEccC---------C-----------CCCEEEEEEeCC
Confidence 46789998777777776666777766421 111 11111100 0 11246889986
Q ss_pred CCcEEEEeCC-C-eEEECCCCcE-EEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEE
Q psy4832 302 DKTMFIADGT-N-IRVVSPEGII-HTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFK 376 (770)
Q Consensus 302 ~G~lYvaD~~-~-Ir~id~~G~i-~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~ 376 (770)
+++++++-+. . |+..|..+.. ..+...... -.+...+++++ ++.++++- ++.|+.
T Consensus 176 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~-~~~~l~~g~~dg~i~~ 235 (435)
T 4e54_B 176 NTNQFYASSMEGTTRLQDFKGNILRVFASSDTI-------------------NIWFCSLDVSA-SSRMVVTGDNVGNVIL 235 (435)
T ss_dssp CTTEEEEECSSSCEEEEETTSCEEEEEECCSSC-------------------SCCCCCEEEET-TTTEEEEECSSSBEEE
T ss_pred CCCEEEEEeCCCEEEEeeccCCceeEEeccCCC-------------------CccEEEEEECC-CCCEEEEEeCCCcEee
Confidence 6776665433 3 8888876543 333322211 12345789998 77766654 456666
Q ss_pred EcCCC
Q psy4832 377 LTNDL 381 (770)
Q Consensus 377 i~~~G 381 (770)
++.++
T Consensus 236 wd~~~ 240 (435)
T 4e54_B 236 LNMDG 240 (435)
T ss_dssp EESSS
T ss_pred eccCc
Confidence 66544
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.46 E-value=2.8 Score=43.22 Aligned_cols=56 Identities=14% Similarity=0.065 Sum_probs=35.0
Q ss_pred cCceEEEEcCCCC-EEEEeC------ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEe
Q psy4832 180 LTPVALTSGPDGS-LYVGDF------NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISD 240 (770)
Q Consensus 180 ~~P~~la~~~dG~-lyv~d~------~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd 240 (770)
.....+++.|||. |+++.. ..|..++.+ |+...+.... . ...++++|.+..|+++.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~----~-~~~~~wspdg~~l~~~~ 122 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK----N-IRSLEWNEDSRKLLIVG 122 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES----E-EEEEEECTTSSEEEEEE
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC----C-ccceeECCCCCEEEEEE
Confidence 4567788999996 444321 258888765 4444444321 1 67889998555677764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.39 E-value=1.9 Score=44.77 Aligned_cols=64 Identities=14% Similarity=-0.051 Sum_probs=37.0
Q ss_pred cceEEEcc--CCcEEEEeC-CC-eEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEE
Q psy4832 294 PKGLAIKA--DKTMFIADG-TN-IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHF 368 (770)
Q Consensus 294 P~gIavd~--~G~lYvaD~-~~-Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv 368 (770)
...|++++ ++.++++-+ .. |+..|.. +....+..... -.....++++| ++.+++
T Consensus 128 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--------------------~~~i~~~~~~p-dg~~la 186 (343)
T 3lrv_A 128 IIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS--------------------DVEYSSGVLHK-DSLLLA 186 (343)
T ss_dssp EEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS--------------------SCCCCEEEECT-TSCEEE
T ss_pred EEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC--------------------CCceEEEEECC-CCCEEE
Confidence 45788888 888766433 32 7777743 44433221110 11256899999 888777
Q ss_pred Ee--CCEEEEEc
Q psy4832 369 ID--DRVIFKLT 378 (770)
Q Consensus 369 ~D--~~~I~~i~ 378 (770)
+- ++.|+.++
T Consensus 187 sg~~dg~i~iwd 198 (343)
T 3lrv_A 187 LYSPDGILDVYN 198 (343)
T ss_dssp EECTTSCEEEEE
T ss_pred EEcCCCEEEEEE
Confidence 63 46666666
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.32 E-value=1 Score=52.91 Aligned_cols=66 Identities=9% Similarity=0.019 Sum_probs=36.6
Q ss_pred ceEEEEcCCCCEEE-EeC-ceEEEEcCC---CcEEEEeccCcccccceeEEEEeCCC-CcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGPDGSLYV-GDF-NLVRRLTPE---GNVFTVLQLSATQVSYQYYLALSPAD-GHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~dG~lyv-~d~-~~I~~i~~~---G~v~~~~~~~~~~~~~p~~lav~p~~-g~lyvsd~~~~~I~~i~ 250 (770)
..++++.|+|.+++ +.. +.|+.++.. +.....+. ..-.....++++|.. +.++++-..++.|+.++
T Consensus 12 V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~---~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 12 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT---GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp EEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC---CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred eEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc---CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 35677777776444 333 456666543 22232331 122345788998631 66666666667776664
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=95.16 E-value=4 Score=43.28 Aligned_cols=63 Identities=14% Similarity=0.016 Sum_probs=34.9
Q ss_pred EEEcCCCCEEEEeCceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 185 LTSGPDGSLYVGDFNLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 185 la~~~dG~lyv~d~~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
++.+++.-+-.+..+.|+.++. +|+....+... .-.....++++| ++.++++-..++.|..++
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~--~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGSVSALAETD--ESTYVASVKWSH-DGSFLSVGLGNGLVDIYD 162 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCCEEEEEECC--TTCCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCcEeEeeecC--CCCCEEEEEECC-CCCEEEEECCCCeEEEEE
Confidence 4444432222233356777764 46666555321 233467899998 665555555566777664
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.15 E-value=3.9 Score=45.97 Aligned_cols=46 Identities=7% Similarity=-0.008 Sum_probs=28.6
Q ss_pred CCCcEEEEecCCceEEEEcCCCCCcEEEEEe--cCCCCCCceEEEECCCCC
Q psy4832 546 ATNEIYVFNRYGQHITTRDMTSGKPRYSFLY--SKNTSFGKLSTITDASGN 594 (770)
Q Consensus 546 ~~~e~yvfd~~G~~~~t~d~~tg~~~y~~~Y--d~~~~~G~L~~vtd~~G~ 594 (770)
..+++.+++..++...+.........+.... ..+ |....+.+.+|.
T Consensus 243 ~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d---~~~La~a~edG~ 290 (588)
T 2j04_A 243 CPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKE---STILLMSNKTSY 290 (588)
T ss_dssp CSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSS---CEEEEECSSCEE
T ss_pred eCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCC---CCEEEEEcCCCC
Confidence 3578888987777764444334444555555 444 666777776776
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=95.05 E-value=4 Score=42.69 Aligned_cols=30 Identities=13% Similarity=0.127 Sum_probs=19.1
Q ss_pred eEEEccCCc-EEEEeCCC-eEEECCC-CcEEEe
Q psy4832 296 GLAIKADKT-MFIADGTN-IRVVSPE-GIIHTL 325 (770)
Q Consensus 296 gIavd~~G~-lYvaD~~~-Ir~id~~-G~i~t~ 325 (770)
++++.++|. |+++.... |+.++.+ |....+
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~ 117 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVV 117 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCcceee
Confidence 457888886 66666544 8888755 444433
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=95.01 E-value=3.5 Score=41.75 Aligned_cols=66 Identities=9% Similarity=0.017 Sum_probs=40.2
Q ss_pred ceEEEEcCCCCEEEEeC--ceEEEEcCCC---cEEEEeccCcccccceeEEEEeCC-CCcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGPDGSLYVGDF--NLVRRLTPEG---NVFTVLQLSATQVSYQYYLALSPA-DGHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~--~~I~~i~~~G---~v~~~~~~~~~~~~~p~~lav~p~-~g~lyvsd~~~~~I~~i~ 250 (770)
-..++++++|.++++-. +.|+.++.++ +....+. ..-.....+++++. ++.++++-..++.|+..+
T Consensus 12 V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~---gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 12 IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT---GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC---CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc---cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 36788999998776543 4677766542 2222221 11223468888752 477777777777777764
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.99 E-value=4.2 Score=42.56 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=18.4
Q ss_pred ceeEEEEeCCCCcEEEEeCCCcEEEEEec
Q psy4832 223 YQYYLALSPADGHLYISDAEKHQILRVLS 251 (770)
Q Consensus 223 ~p~~lav~p~~g~lyvsd~~~~~I~~i~~ 251 (770)
....|+++|.++.++++-..++.|+.++.
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~ 73 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDL 73 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEEC
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEEC
Confidence 35678888745666666555666666643
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=94.98 E-value=3.8 Score=42.08 Aligned_cols=112 Identities=11% Similarity=0.025 Sum_probs=64.9
Q ss_pred CceEEEEcCC----CCEEE-EeC-ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccC
Q psy4832 181 TPVALTSGPD----GSLYV-GDF-NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLE 253 (770)
Q Consensus 181 ~P~~la~~~d----G~lyv-~d~-~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~ 253 (770)
...++++.|+ |.+++ +.. +.|+.++.+ ++....+. ..-.....++++|.++.++++-..++.|+.++.
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~-- 145 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV---GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI-- 145 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE---SCCSCEEEEEECSSCTTEEEEEETTSCEEEEET--
T ss_pred cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec---CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe--
Confidence 3567888877 44444 444 478888854 66655542 223456789999856777777666777777743
Q ss_pred CccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEe-CCC-eEEECCC
Q psy4832 254 SVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIAD-GTN-IRVVSPE 319 (770)
Q Consensus 254 ~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD-~~~-Ir~id~~ 319 (770)
.++........-. ..-.....|++++++..+++- ... |+..+..
T Consensus 146 ----~~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 146 ----QTDTLVAIFGGVE------------------GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp ----TTTEEEEEECSTT------------------SCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred ----ecCeEEEEecccc------------------cccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence 2233322221000 011246688998888755543 333 7777644
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=94.30 E-value=6.1 Score=41.38 Aligned_cols=149 Identities=14% Similarity=0.188 Sum_probs=82.1
Q ss_pred CCCEEEEeC-ceEEEEcC-CCcEEEEeccCcc-------cccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCC
Q psy4832 190 DGSLYVGDF-NLVRRLTP-EGNVFTVLQLSAT-------QVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSI 260 (770)
Q Consensus 190 dG~lyv~d~-~~I~~i~~-~G~v~~~~~~~~~-------~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g 260 (770)
++.||+++. +.|..++. +|++......... .......++++ ++.||+.... +.|+.++. .+|
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~~~-g~l~a~d~------~tG 123 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS--GGHVYIGSEK-AQVYALNT------SDG 123 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE--TTEEEEEETT-SEEEEEET------TTC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEe--CCEEEEEcCC-CEEEEEEC------CCC
Confidence 688999986 58999997 5888755443211 11112344555 7899998754 68888853 245
Q ss_pred cEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECC-CCcEEEeecCCCCCCCcCCC
Q psy4832 261 NWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSP-EGIIHTLIGHHKHHNIWSPF 338 (770)
Q Consensus 261 ~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~-~G~i~t~~g~~~~~~~~~p~ 338 (770)
...--...+.. ....| +++ ++.||+..... |..+|. +|++.-........
T Consensus 124 ~~~W~~~~~~~------------------~~~~p---~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~------ 175 (376)
T 3q7m_A 124 TVAWQTKVAGE------------------ALSRP---VVS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPS------ 175 (376)
T ss_dssp CEEEEEECSSC------------------CCSCC---EEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC--------
T ss_pred CEEEEEeCCCc------------------eEcCC---EEE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCc------
Confidence 54322211100 01112 232 67888876555 888885 67655433221100
Q ss_pred ccCCCcccccccccCcceEEEeCCCCeEEEEe-CCEEEEEcC-CCcEEEEe
Q psy4832 339 NCHRSFPASTAQLQWPTGLALSPLDDSLHFID-DRVIFKLTN-DLKVKIVA 387 (770)
Q Consensus 339 ~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D-~~~I~~i~~-~G~v~~va 387 (770)
..+......+++ ++.||+.. ++.|+.+++ +|++....
T Consensus 176 ----------~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~ 214 (376)
T 3q7m_A 176 ----------LSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQ 214 (376)
T ss_dssp -------------CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEE
T ss_pred ----------eeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 001111223444 67888876 578999985 68765433
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.24 E-value=5.6 Score=40.77 Aligned_cols=110 Identities=9% Similarity=-0.083 Sum_probs=62.9
Q ss_pred ceEEEEEec-CCceEEEEEeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEEEeCCCCeEEEEEEccCCcEeEEEecCc-
Q psy4832 637 DLKIRALKK-GRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLISLVYDERGFLIFAQMFRH- 714 (770)
Q Consensus 637 g~l~~~~~~-~g~~~~y~YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~~~p~~g~~~~~~yd~~G~l~~~~~~~~- 714 (770)
+.++..... .+....-.+.+.|+++..-..+|.+.-|..... ++...... ........+.+.|+.+.....+.
T Consensus 208 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~ 282 (369)
T 3zwl_B 208 YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL----QVLKKYET-DCPLNTAVITPLKEFIILGGGQEA 282 (369)
T ss_dssp TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----CEEEEEEC-SSCEEEEEECSSSSEEEEEECCC-
T ss_pred cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC----ceeeeecC-CCCceeEEecCCCceEEEeecCCC
Confidence 445544443 444556777777887776667775444433221 12222223 56677788888888777764432
Q ss_pred -------------EEEEEeCCCCCeEEEEcCCCCEEEEEEeCCCCceEEe
Q psy4832 715 -------------KYYIATDQCGTPVMVFNQYGETVREIMRSPYGHIVYD 751 (770)
Q Consensus 715 -------------~~~~~~d~~G~~~~~~d~~G~~v~~~~yd~~G~~~~~ 751 (770)
...+.--..+.++.........|..+...|.|+.+..
T Consensus 283 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 332 (369)
T 3zwl_B 283 KDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYAS 332 (369)
T ss_dssp ------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEE
Confidence 3333334455666555555455677788888876633
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=93.99 E-value=2.7 Score=43.86 Aligned_cols=75 Identities=11% Similarity=0.107 Sum_probs=45.4
Q ss_pred CCceEEEEEeCCCCEEEEEcCCCCEEEEEecCCCCCee-EEEEEeCCCCeEEEEEEccCCcEeEEEecCcEEEEEeC
Q psy4832 646 GRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQ-VTHIYSPRYGKLISLVYDERGFLIFAQMFRHKYYIATD 721 (770)
Q Consensus 646 ~g~~~~y~YD~~grlv~~~d~~G~~~~~~y~~~~~~~~-~~~~~~p~~g~~~~~~yd~~G~l~~~~~~~~~~~~~~d 721 (770)
.+....-.+.+.|++++.-..+|.+.-|.......+.+ +..+... .+....+.+.+.|++++.-..+....+-.+
T Consensus 205 ~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 205 GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS-QLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp SSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS-SSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred CceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC-CCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 34455667778888877777788666666555544222 2222333 566788888888887776655555544444
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=93.95 E-value=7.1 Score=40.87 Aligned_cols=191 Identities=14% Similarity=0.156 Sum_probs=98.2
Q ss_pred CCCCEEEEeC-ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEE
Q psy4832 189 PDGSLYVGDF-NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAV 266 (770)
Q Consensus 189 ~dG~lyv~d~-~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~va 266 (770)
.+|.||++.. +.|..++. +|++.............| ++. ++.||+... ++.|+.++. .+|...-..
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p---~~~--~~~v~v~~~-~g~l~~~d~------~tG~~~W~~ 169 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRP---VVS--DGLVLIHTS-NGQLQALNE------ADGAVKWTV 169 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCC---EEE--TTEEEEECT-TSEEEEEET------TTCCEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCC---EEE--CCEEEEEcC-CCeEEEEEC------CCCcEEEEE
Confidence 3789999876 58999996 598875554322222222 343 577777653 467887752 245433222
Q ss_pred CCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECC-CCcEEEeecCCCCCCCcCCCccCCCc
Q psy4832 267 GSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSP-EGIIHTLIGHHKHHNIWSPFNCHRSF 344 (770)
Q Consensus 267 G~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~-~G~i~t~~g~~~~~~~~~p~~~~~~~ 344 (770)
...... . .+......+++ ++.||+..... |..+|+ +|++.-......... .
T Consensus 170 ~~~~~~------~----------~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~----------~ 222 (376)
T 3q7m_A 170 NLDMPS------L----------SLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATG----------S 222 (376)
T ss_dssp ECCC---------------------CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC--------------
T ss_pred eCCCCc------e----------eecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCC----------C
Confidence 111100 0 00011122333 57788875444 888885 576543322111000 0
Q ss_pred cccccccc-CcceEEEeCCCCeEEEEe-CCEEEEEcC-CCcEEEEecCCCCCCCCCCCCccccccccccccccccCCccc
Q psy4832 345 PASTAQLQ-WPTGLALSPLDDSLHFID-DRVIFKLTN-DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVR 421 (770)
Q Consensus 345 ~~~~~~l~-~P~gla~d~~~g~lyv~D-~~~I~~i~~-~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (770)
.....+. .....++. ++.||+.. ++.|+.++. +|++.....
T Consensus 223 -~~~~~~~~~~~~p~~~--~~~v~~~~~~g~l~~~d~~tG~~~w~~~--------------------------------- 266 (376)
T 3q7m_A 223 -TEIDRLSDVDTTPVVV--NGVVFALAYNGNLTALDLRSGQIMWKRE--------------------------------- 266 (376)
T ss_dssp --------CCCCCCEEE--TTEEEEECTTSCEEEEETTTCCEEEEEC---------------------------------
T ss_pred -cccccccccCCCcEEE--CCEEEEEecCcEEEEEECCCCcEEeecc---------------------------------
Confidence 0000010 00111334 78899987 678888885 576543321
Q ss_pred ccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCcEE
Q psy4832 422 ASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGRMF 464 (770)
Q Consensus 422 a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~i~ 464 (770)
+..+.+++++ ++.||++...+. +..+++ +|++.
T Consensus 267 -----~~~~~~~~~~-~~~l~~~~~~g~----l~~~d~~tG~~~ 300 (376)
T 3q7m_A 267 -----LGSVNDFIVD-GNRIYLVDQNDR----VMALTIDGGVTL 300 (376)
T ss_dssp -----CCCEEEEEEE-TTEEEEEETTCC----EEEEETTTCCEE
T ss_pred -----CCCCCCceEE-CCEEEEEcCCCe----EEEEECCCCcEE
Confidence 1123455554 678999987643 677774 67753
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=93.78 E-value=7.5 Score=40.51 Aligned_cols=64 Identities=5% Similarity=-0.149 Sum_probs=35.8
Q ss_pred ceEEEEcCCCCEEEEeC-ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGPDGSLYVGDF-NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~-~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
-.++++.|||.++.+-. +.++.++.+ ++...... +.....+++.+..+.+.++-...+.|+.++
T Consensus 22 V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 22 VTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQE-----MRHLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp CCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEE-----CSCCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred eEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeee-----cCCeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 46899999999776544 455555533 22221111 112345666664555556655556777664
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=93.69 E-value=7.1 Score=39.98 Aligned_cols=107 Identities=16% Similarity=0.152 Sum_probs=59.0
Q ss_pred cceEEEccC----CcEEE-EeCCC-eEEECCC-CcE-EEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe
Q psy4832 294 PKGLAIKAD----KTMFI-ADGTN-IRVVSPE-GII-HTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS 365 (770)
Q Consensus 294 P~gIavd~~----G~lYv-aD~~~-Ir~id~~-G~i-~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~ 365 (770)
...+++.++ |.+++ +.... |+..+.. +.. ..+.+.. .....|+++|.++.
T Consensus 72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~----------------------~~i~~~~~~~~~~~ 129 (366)
T 3k26_A 72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHG----------------------NAINELKFHPRDPN 129 (366)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCC----------------------SCEEEEEECSSCTT
T ss_pred EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCC----------------------CcEEEEEECCCCCC
Confidence 457888777 45444 44444 8888744 433 3332221 23567888874455
Q ss_pred EE-EEe-CCEEEEEcC-CCcEEEEecC-CCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCE
Q psy4832 366 LH-FID-DRVIFKLTN-DLKVKIVAGI-PLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDL 441 (770)
Q Consensus 366 ly-v~D-~~~I~~i~~-~G~v~~vaG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~l 441 (770)
++ .+. ++.|+.++. +++....... ..+ -.....|+++|+|.+
T Consensus 130 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------------------------------~~~v~~~~~~~~~~~ 175 (366)
T 3k26_A 130 LLLSVSKDHALRLWNIQTDTLVAIFGGVEGH----------------------------------RDEVLSADYDLLGEK 175 (366)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECSTTSC----------------------------------SSCEEEEEECTTSSE
T ss_pred EEEEEeCCCeEEEEEeecCeEEEEecccccc----------------------------------cCceeEEEECCCCCE
Confidence 44 444 567777774 3443332211 000 134688999999986
Q ss_pred EEEeCCCCceeeEEEEcC
Q psy4832 442 YIADIDARKVNALRVIDS 459 (770)
Q Consensus 442 yVaD~~~~ri~~i~~i~~ 459 (770)
+++-...+. |+..+.
T Consensus 176 l~~~~~dg~---i~i~d~ 190 (366)
T 3k26_A 176 IMSCGMDHS---LKLWRI 190 (366)
T ss_dssp EEEEETTSC---EEEEES
T ss_pred EEEecCCCC---EEEEEC
Confidence 666655554 455553
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.51 E-value=6.9 Score=39.25 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=42.1
Q ss_pred EEEEcCCCCEEEEeCceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 184 ALTSGPDGSLYVGDFNLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 184 ~la~~~dG~lyv~d~~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
.|+..+++-|-++-.+.|+..+. +|+...++... ..-..-..++++| ++.+.++-..++.|+.++
T Consensus 30 ~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~-~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~ 95 (318)
T 4ggc_A 30 LVDWSSGNVLAVALDNSVYLWSASSGDILQLLQME-QPGEYISSVAWIK-EGNYLAVGTSSAEVQLWD 95 (318)
T ss_dssp CEEECTTSEEEEEETTEEEEEETTTCCEEEEEECC-STTCCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred EEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEec-CCCCeEEEEEECC-CCCEEEEEECCCcEEEee
Confidence 36677776555655568888875 57777666421 1223357899997 677767766667776664
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=93.31 E-value=7.8 Score=39.28 Aligned_cols=65 Identities=9% Similarity=0.078 Sum_probs=37.7
Q ss_pred ceEEEEcCC-CCEEEEeC--ceEEEEcCC--Cc----EEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGPD-GSLYVGDF--NLVRRLTPE--GN----VFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~d-G~lyv~d~--~~I~~i~~~--G~----v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
-.+|++.|+ ++++++-. +.|+.++.+ .. ....+ ...-.....++++| ++.+.++-..++.|+..+
T Consensus 41 V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l---~~h~~~V~~~~~s~-dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL---RGHSHFVSDVVISS-DGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE---CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE---eCCCCCEEEEEECC-CCCEEEEEcccccceEEe
Confidence 367888886 57766432 455555422 11 11222 11223467899997 777776666667777664
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=93.07 E-value=16 Score=42.33 Aligned_cols=56 Identities=18% Similarity=0.111 Sum_probs=34.1
Q ss_pred EEEEcCCCCEEEEeCceEEEEcCC-CcEEEEeccCccccc--ceeEEEEeCCCCcEEEE
Q psy4832 184 ALTSGPDGSLYVGDFNLVRRLTPE-GNVFTVLQLSATQVS--YQYYLALSPADGHLYIS 239 (770)
Q Consensus 184 ~la~~~dG~lyv~d~~~I~~i~~~-G~v~~~~~~~~~~~~--~p~~lav~p~~g~lyvs 239 (770)
.+++.|||.+++++.+.|+.++.+ |+...++........ ...+++++|....|.++
T Consensus 21 ~~~w~~dg~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~ 79 (740)
T 4a5s_A 21 SLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLE 79 (740)
T ss_dssp CEEECSSSEEEEEETTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEE
T ss_pred ccEECCCCcEEEEcCCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEE
Confidence 577889998877776688888854 665555542211111 12458889844445444
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=93.05 E-value=8.2 Score=38.85 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=39.7
Q ss_pred CceEEEEcC--CCCEEEEe-C-ceEEEEcCCC----------cEEEEeccCcccccceeEEEEeCCC-CcEEEEeCCCcE
Q psy4832 181 TPVALTSGP--DGSLYVGD-F-NLVRRLTPEG----------NVFTVLQLSATQVSYQYYLALSPAD-GHLYISDAEKHQ 245 (770)
Q Consensus 181 ~P~~la~~~--dG~lyv~d-~-~~I~~i~~~G----------~v~~~~~~~~~~~~~p~~lav~p~~-g~lyvsd~~~~~ 245 (770)
...++++.| ++.++++- . +.|+.++.+. +....+. ..-.....++++|.. +.++++-..++.
T Consensus 59 ~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 135 (351)
T 3f3f_A 59 SIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN---DSKGSLYSVKFAPAHLGLKLACLGNDGI 135 (351)
T ss_dssp CEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC---CCSSCEEEEEECCGGGCSEEEEEETTCE
T ss_pred cEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeec---ccCCceeEEEEcCCCCCcEEEEecCCCc
Confidence 357788888 57766543 3 4666666432 2222221 223346789999731 666666666677
Q ss_pred EEEEec
Q psy4832 246 ILRVLS 251 (770)
Q Consensus 246 I~~i~~ 251 (770)
|+.++.
T Consensus 136 v~iwd~ 141 (351)
T 3f3f_A 136 LRLYDA 141 (351)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 777753
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.84 E-value=10 Score=39.42 Aligned_cols=69 Identities=10% Similarity=0.055 Sum_probs=40.3
Q ss_pred ceEEEEcC-CCCEEEEeC--ceEEEEcCCC-cEEEEec------cC----cccccceeEEEEeCCCCcEEEEeCCCcEEE
Q psy4832 182 PVALTSGP-DGSLYVGDF--NLVRRLTPEG-NVFTVLQ------LS----ATQVSYQYYLALSPADGHLYISDAEKHQIL 247 (770)
Q Consensus 182 P~~la~~~-dG~lyv~d~--~~I~~i~~~G-~v~~~~~------~~----~~~~~~p~~lav~p~~g~lyvsd~~~~~I~ 247 (770)
..+|++.| +|.++++-. +.|+.++.+. .....+. .. ...-.....++++|.++.++++-..++.|.
T Consensus 46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 125 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLK 125 (408)
T ss_dssp EEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEE
T ss_pred EEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEE
Confidence 46788888 888665432 4677776442 2111100 00 012334678999986676777766667777
Q ss_pred EEe
Q psy4832 248 RVL 250 (770)
Q Consensus 248 ~i~ 250 (770)
.++
T Consensus 126 iwd 128 (408)
T 4a11_B 126 VWD 128 (408)
T ss_dssp EEE
T ss_pred Eee
Confidence 774
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.80 E-value=10 Score=39.36 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=33.4
Q ss_pred eEEEEcCCCCE--EEEeC---ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 183 VALTSGPDGSL--YVGDF---NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 183 ~~la~~~dG~l--yv~d~---~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
..+++.|||.. |+.+. ..|+.++.++.....+.... ......++++|.+..|+++... ..|+.++
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~--~~~~~~~~~spdg~~l~~~~~~-~~l~~~d 108 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGK--GDNTFGGFISTDERAFFYVKNE-LNLMKVD 108 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSS--CBCTTTCEECTTSSEEEEEETT-TEEEEEE
T ss_pred ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCC--CCccccceECCCCCEEEEEEcC-CcEEEEE
Confidence 44567788863 33333 26777876644333331111 1111236778755556555443 4677775
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.54 E-value=10 Score=38.67 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=40.2
Q ss_pred CceEEEEcCC---CCEEEE-eC-ceEEEEcCC--CcEE-EEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 181 TPVALTSGPD---GSLYVG-DF-NLVRRLTPE--GNVF-TVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 181 ~P~~la~~~d---G~lyv~-d~-~~I~~i~~~--G~v~-~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
.-.+|++.|+ |.++++ .. +.|+.++.+ +... ..+. ..-.....++++| ++.++++-..++.|+.++
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd 114 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ---MHTGPVLDVCWSD-DGSKVFTASCDKTAKMWD 114 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE---ECSSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec---cccCCEEEEEECc-CCCEEEEEcCCCcEEEEE
Confidence 3578889998 565544 43 456665533 5443 3332 1233467899998 666666666667787775
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.17 E-value=24 Score=42.11 Aligned_cols=215 Identities=11% Similarity=0.024 Sum_probs=107.8
Q ss_pred CceEEEEcCCCCEEEEeC--ceEEEEcCCCcEEE-EeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 181 TPVALTSGPDGSLYVGDF--NLVRRLTPEGNVFT-VLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~--~~I~~i~~~G~v~~-~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
...+|+++|+|.+.++-. +.|+.++..+.... ... .-.....|+++| |.+.++-..++.|+.++..
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~----~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~----- 87 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE----DRSAIKEMRFVK--GIYLVVINAKDTVYVLSLY----- 87 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS----SCCCEEEEEEET--TTEEEEEETTCEEEEEETT-----
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC----CCCCEEEEEEcC--CCEEEEEECcCeEEEEECC-----
Confidence 357899999998766543 58888886654332 221 122457899998 5555555556777777431
Q ss_pred CCCcE-EEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC-eEEECCCC-cEEEeecCCCCCC
Q psy4832 258 PSINW-EVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN-IRVVSPEG-IIHTLIGHHKHHN 333 (770)
Q Consensus 258 ~~g~~-~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~-Ir~id~~G-~i~t~~g~~~~~~ 333 (770)
++.. ..+... .....++++++++ |+++.... |+..|.+. .+..+.-...
T Consensus 88 -~~~~~~~~~~~-----------------------~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~--- 140 (902)
T 2oaj_A 88 -SQKVLTTVFVP-----------------------GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNL--- 140 (902)
T ss_dssp -TCSEEEEEECS-----------------------SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCH---
T ss_pred -CCcEEEEEcCC-----------------------CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccc---
Confidence 2222 111100 1245788888887 44554444 88887553 3322110000
Q ss_pred CcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe-CCEEEEEcC-CCcE-EEEecCCCCCCCCCCCCccccccccc
Q psy4832 334 IWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID-DRVIFKLTN-DLKV-KIVAGIPLHCRTGDKDKRDFKDKQSK 409 (770)
Q Consensus 334 ~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D-~~~I~~i~~-~G~v-~~vaG~~~~~~~~~~~~~~~~~~~~~ 409 (770)
+.. .............|+++|.++. |.++. ++.| ..+. .++. ..+.+............
T Consensus 141 -~~~------~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~--------- 203 (902)
T 2oaj_A 141 -QKS------SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFS--------- 203 (902)
T ss_dssp -HHH------HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTC---------
T ss_pred -ccc------ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccc---------
Confidence 000 0000112335678999983334 44443 4666 7774 3443 33332200000000000
Q ss_pred cccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCcE
Q psy4832 410 TKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGRM 463 (770)
Q Consensus 410 ~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~i 463 (770)
.......-....+++++|+|.++++-...+. |+..|. +|+.
T Consensus 204 ----------~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~---i~lWd~~~g~~ 245 (902)
T 2oaj_A 204 ----------EKTNEKRTPKVIQSLYHPNSLHIITIHEDNS---LVFWDANSGHM 245 (902)
T ss_dssp ----------CCTTSCBCCCEEEEEECTTSSEEEEEETTCC---EEEEETTTCCE
T ss_pred ----------cccccccCCCeEEEEEcCCCCEEEEEECCCe---EEEEECCCCcE
Confidence 0000011134689999999997777666554 455553 4554
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.15 E-value=11 Score=38.26 Aligned_cols=25 Identities=12% Similarity=-0.051 Sum_probs=16.4
Q ss_pred CcceEEEeCCCC-eEEEEe-----CCEEEEEc
Q psy4832 353 WPTGLALSPLDD-SLHFID-----DRVIFKLT 378 (770)
Q Consensus 353 ~P~gla~d~~~g-~lyv~D-----~~~I~~i~ 378 (770)
....|+++| ++ .|.++- ++.|+.++
T Consensus 20 ~v~~~~~~p-~~~~l~~~~s~~~~d~~v~iw~ 50 (357)
T 3i2n_A 20 TVFDCKWVP-CSAKFVTMGNFARGTGVIQLYE 50 (357)
T ss_dssp CEEEEEECT-TSSEEEEEEC--CCCEEEEEEE
T ss_pred ceEEEEEcC-CCceEEEecCccCCCcEEEEEe
Confidence 457899999 66 455554 35666666
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.97 E-value=6.3 Score=46.10 Aligned_cols=69 Identities=13% Similarity=0.115 Sum_probs=39.8
Q ss_pred ceEEEEcCC--CCEEEEe-C-ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCC-CcEEEEeCCCcEEEEEec
Q psy4832 182 PVALTSGPD--GSLYVGD-F-NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPAD-GHLYISDAEKHQILRVLS 251 (770)
Q Consensus 182 P~~la~~~d--G~lyv~d-~-~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~-g~lyvsd~~~~~I~~i~~ 251 (770)
..++++.++ |+++++- . +.|+.++.+ ++...+... .........++++|.. +.++++-..++.|..++.
T Consensus 56 V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl 130 (753)
T 3jro_A 56 VWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF 130 (753)
T ss_dssp EEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred eEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEe
Confidence 467788776 7755543 3 466666644 332222111 1223446789999842 667777667778877753
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.90 E-value=12 Score=38.20 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=38.8
Q ss_pred ceEEEEcCCCCEEEEeC--ceEEEEcCC--------CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGPDGSLYVGDF--NLVRRLTPE--------GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~--~~I~~i~~~--------G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
..+|++.|+|.++++-. +.|+.++.+ .+....+. ..-.....++++| ++.++++-..++.|+.++
T Consensus 61 v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~---~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE---GHENEVKGVAWSN-DGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-------CEEEEEECT-TSCEEEEEETTSCEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc---CCCCcEEEEEECC-CCCEEEEEeCCCEEEEEe
Confidence 46788999998766543 466666643 12222221 1223457899998 677777766667777664
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=91.45 E-value=24 Score=40.61 Aligned_cols=56 Identities=5% Similarity=0.039 Sum_probs=33.4
Q ss_pred ceEEEEcCCCCEE--EEeCc-----eEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeC
Q psy4832 182 PVALTSGPDGSLY--VGDFN-----LVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDA 241 (770)
Q Consensus 182 P~~la~~~dG~ly--v~d~~-----~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~ 241 (770)
-.++++.|||... ..+.. .|+.++.+ |+...... ... ...+++++|.+..||++..
T Consensus 127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~~---~~~~~~wspDg~~l~~~~~ 190 (710)
T 2xdw_A 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERV---KFSCMAWTHDGKGMFYNAY 190 (710)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEE---CSCCEEECTTSSEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cCc---ccceEEEEeCCCEEEEEEE
Confidence 3578899999843 33321 78888865 45443211 011 1357899985566777654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=90.62 E-value=20 Score=38.09 Aligned_cols=63 Identities=8% Similarity=-0.045 Sum_probs=36.9
Q ss_pred ceEEEEcCCCCEEEEe-C-ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGPDGSLYVGD-F-NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~dG~lyv~d-~-~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
-.+|++.|+|.++++- . +.|+.++. +++....+.. .-.....++. ++.+.++-.....|+..+
T Consensus 150 V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~---h~~~v~~~s~---~~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS---HSARVGSLSW---NSYILSSGSRSGHIHHHD 215 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEE---ETTEEEEEETTSEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC---CCCceEEEee---CCCEEEEEeCCCceeEee
Confidence 3678999999866643 3 47777774 4555544421 1122334444 355666666666776664
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.44 E-value=9.8 Score=43.83 Aligned_cols=29 Identities=21% Similarity=0.141 Sum_probs=20.1
Q ss_pred cceEEEeCCCCe-EEEEeCCEEEEEcCC-CcE
Q psy4832 354 PTGLALSPLDDS-LHFIDDRVIFKLTND-LKV 383 (770)
Q Consensus 354 P~gla~d~~~g~-lyv~D~~~I~~i~~~-G~v 383 (770)
...++++| +|+ |.++..+.|+.++.+ |+.
T Consensus 112 ~~~~~~SP-DG~~la~~~~~~i~~~~~~~g~~ 142 (719)
T 1z68_A 112 IQYLCWSP-VGSKLAYVYQNNIYLKQRPGDPP 142 (719)
T ss_dssp BCCEEECS-STTCEEEEETTEEEEESSTTSCC
T ss_pred cccceECC-CCCEEEEEECCeEEEEeCCCCCc
Confidence 45688999 774 666667788888853 443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=90.33 E-value=30 Score=39.78 Aligned_cols=58 Identities=19% Similarity=0.301 Sum_probs=38.4
Q ss_pred CCCEEEEeC-ceEEEEcC-CCcEEEEeccCcccc--------cceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 190 DGSLYVGDF-NLVRRLTP-EGNVFTVLQLSATQV--------SYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 190 dG~lyv~d~-~~I~~i~~-~G~v~~~~~~~~~~~--------~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
+|.||++.. +.|..+|. +|++.-........- ....+++++ ++.||+... +++++.++
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~v~v~~~-dg~l~alD 144 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAW-DGRLIALD 144 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECT-TSEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE--CCEEEEEcC-CCEEEEEE
Confidence 788999886 68899985 688876554321110 112466776 688888754 46788885
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.20 E-value=3.7 Score=47.55 Aligned_cols=58 Identities=16% Similarity=0.132 Sum_probs=32.9
Q ss_pred eEEEEcCCCCEEEEeC-ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEe
Q psy4832 183 VALTSGPDGSLYVGDF-NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISD 240 (770)
Q Consensus 183 ~~la~~~dG~lyv~d~-~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd 240 (770)
..+++.|||.++.+.. +.|+.++.+ |+...++............++++|.+..|.++.
T Consensus 19 ~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~ 78 (719)
T 1z68_A 19 FFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLES 78 (719)
T ss_dssp CCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEE
T ss_pred CccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEe
Confidence 3667778886555544 478888765 555555431110001257889998444455543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.32 E-value=24 Score=37.28 Aligned_cols=157 Identities=8% Similarity=0.017 Sum_probs=76.9
Q ss_pred CCeEEEC-CCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCCEEEEe-C-ceEEEEcC--
Q psy4832 132 EGILQKG-DGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGD-F-NLVRRLTP-- 206 (770)
Q Consensus 132 ~gil~~~-dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d-~-~~I~~i~~-- 206 (770)
..+.... +|..+.... ..+.|.+..-....... +..+. .....-....+|++.|++.++++- . +.|+.++.
T Consensus 67 ~~~~~s~~~~~~l~s~s-~dg~v~vwd~~~~~~~~-~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 142 (437)
T 3gre_A 67 TSSAVSPGETPYLITGS-DQGVIKIWNLKEIIVGE-VYSSS--LTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNH 142 (437)
T ss_dssp EEEEEECSSSCEEEEEE-TTSEEEEEEHHHHHTTC-CCSCS--EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEE
T ss_pred EEEEECCCCCCEEEEec-CCceEEEeECcccccCc-cccee--eeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecc
Confidence 3455666 776554444 66777776543210000 00000 000112346789999988866543 3 45665543
Q ss_pred --CCcEEEEeccCc-------c--cccceeEEE--EeCCCCcEEEEeCCCcEEEEEeccCCccCCCCc-EEEEECCCccc
Q psy4832 207 --EGNVFTVLQLSA-------T--QVSYQYYLA--LSPADGHLYISDAEKHQILRVLSLESVADPSIN-WEVAVGSGERC 272 (770)
Q Consensus 207 --~G~v~~~~~~~~-------~--~~~~p~~la--v~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~-~~~vaG~g~~~ 272 (770)
+|+......... . .-.....++ +++ ++.++++-..++.|+.++.. ++. +..+.+..
T Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~------~~~~~~~~~~~~--- 212 (437)
T 3gre_A 143 YQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIR------TLERLQIIENSP--- 212 (437)
T ss_dssp EEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETT------TCCEEEEEECCG---
T ss_pred ccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCC------CCeeeEEEccCC---
Confidence 455444332100 0 111223333 334 56666666667788777531 222 22222210
Q ss_pred cCCCCCCcCCCcccccccccCcceEEEccCCcEEEE-eCCC-eEEECCC
Q psy4832 273 IPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIA-DGTN-IRVVSPE 319 (770)
Q Consensus 273 ~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYva-D~~~-Ir~id~~ 319 (770)
.-.....|++++++.+.++ .... |+..|..
T Consensus 213 -----------------h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 244 (437)
T 3gre_A 213 -----------------RHGAVSSICIDEECCVLILGTTRGIIDIWDIR 244 (437)
T ss_dssp -----------------GGCCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred -----------------CCCceEEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 1124568899988875554 3333 7777743
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=89.24 E-value=20 Score=36.26 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=39.0
Q ss_pred ceEEEEcCCCCEEEEeC--ceEEEEcCC-CcE--EEEeccCcccccceeEEEEeCC-CCcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGPDGSLYVGDF--NLVRRLTPE-GNV--FTVLQLSATQVSYQYYLALSPA-DGHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~--~~I~~i~~~-G~v--~~~~~~~~~~~~~p~~lav~p~-~g~lyvsd~~~~~I~~i~ 250 (770)
-..++++++|.++++-. +.|+.++.. +.. ...+. ..-.....+++++. ++.++++-..++.|+..+
T Consensus 16 V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~---gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 16 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR---GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp EEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE---CCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred EEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc---CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 36788889998766543 466666643 332 22221 11233568888642 467777766667777664
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=89.20 E-value=34 Score=38.73 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=40.0
Q ss_pred CCCEEEEeC--ceEEEEcC--CCcEEEEeccCcccc--------cceeEEEEeCCCCc----EEEEeCCCcEEEEEe
Q psy4832 190 DGSLYVGDF--NLVRRLTP--EGNVFTVLQLSATQV--------SYQYYLALSPADGH----LYISDAEKHQILRVL 250 (770)
Q Consensus 190 dG~lyv~d~--~~I~~i~~--~G~v~~~~~~~~~~~--------~~p~~lav~p~~g~----lyvsd~~~~~I~~i~ 250 (770)
+|.||++.. +.|..+|. +|+..-......... ....++++.|.++. ||+... +++++.++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-dg~l~AlD 137 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-DGNVAALN 137 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-TSEEEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-CCEEEEEE
Confidence 688999886 57999987 799886654322111 11246788544677 888754 46888885
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=87.63 E-value=26 Score=35.57 Aligned_cols=43 Identities=9% Similarity=-0.028 Sum_probs=24.4
Q ss_pred eEEEEcCCC-cEEEEeccCcccccceeEEEEeCCCCcEEEEeC----CCcEEEEEe
Q psy4832 200 LVRRLTPEG-NVFTVLQLSATQVSYQYYLALSPADGHLYISDA----EKHQILRVL 250 (770)
Q Consensus 200 ~I~~i~~~G-~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~----~~~~I~~i~ 250 (770)
.|+.++.++ +...+ .....++++|.+..|+++.. ...+|+.++
T Consensus 44 ~l~~~d~~~~~~~~l--------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~ 91 (347)
T 2gop_A 44 TIVIENLKNNARRFI--------ENATMPRISPDGKKIAFMRANEEKKVSEIWVAD 91 (347)
T ss_dssp EEEEEETTTCCEEEE--------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEE
T ss_pred eEEEEeCCCCceEEc--------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEE
Confidence 566666554 33332 23567899985555665543 234577774
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.38 E-value=34 Score=36.58 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=19.6
Q ss_pred ceEEEeCCCCeEEEE-eCCEEEEEc-CCCc
Q psy4832 355 TGLALSPLDDSLHFI-DDRVIFKLT-NDLK 382 (770)
Q Consensus 355 ~gla~d~~~g~lyv~-D~~~I~~i~-~~G~ 382 (770)
..|++++ +|++.++ ..+.|+.++ .+|+
T Consensus 8 ~~v~~s~-dg~~l~~~~~~~i~v~d~~~g~ 36 (450)
T 2vdu_B 8 QNLLTSR-DGSLVFAIIKNCILSFKYQSPN 36 (450)
T ss_dssp CEEEECS-SSSEEEEEETTEEEEEEEETTT
T ss_pred EEEEecC-CCCEEEEEeCCeEEEEECCCCC
Confidence 4688998 7775544 478888888 5676
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=86.62 E-value=37 Score=36.21 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=21.4
Q ss_pred CeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCcE
Q psy4832 429 SLTALAFSPTGDLYIADIDARKVNALRVIDS-TGRM 463 (770)
Q Consensus 429 ~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~i 463 (770)
....++++++|..+++-...+. |+..+. +|+.
T Consensus 312 ~v~~~~~~~~~~~l~sg~~dg~---i~vwd~~~~~~ 344 (464)
T 3v7d_B 312 RIYSTIYDHERKRCISASMDTT---IRIWDLENGEL 344 (464)
T ss_dssp CEEEEEEETTTTEEEEEETTSC---EEEEETTTTEE
T ss_pred CEEEEEEcCCCCEEEEEeCCCc---EEEEECCCCcE
Confidence 3688999999886666665554 566664 4543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=85.64 E-value=31 Score=34.44 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=37.3
Q ss_pred ceEEEEcC--CCCEEEEe-C-ceEEEEcCC-CcE--EEEeccCcccccceeEEEEeCCC-CcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGP--DGSLYVGD-F-NLVRRLTPE-GNV--FTVLQLSATQVSYQYYLALSPAD-GHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~--dG~lyv~d-~-~~I~~i~~~-G~v--~~~~~~~~~~~~~p~~lav~p~~-g~lyvsd~~~~~I~~i~ 250 (770)
-.++++.+ +|.++++- . +.|+..+.. |+. ...+. ..-.....++++|.. +.++++-..++.|+.++
T Consensus 56 V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~---~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd 129 (297)
T 2pm7_B 56 VWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHA---VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVE 129 (297)
T ss_dssp EEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEEC---CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred eEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEee---cCCCceeEEEeCcCCCCcEEEEEECCCcEEEEE
Confidence 35677765 47766643 3 467777654 321 11111 112345789998742 66666666667777664
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.45 E-value=25 Score=39.04 Aligned_cols=146 Identities=13% Similarity=0.030 Sum_probs=79.6
Q ss_pred CceEEEEcCCCCEEEEeC-ceEEEEcCC-Cc-EEEEeccCcccccceeEE--EEeCCCC-cEEEEeCCCcEEEEEeccCC
Q psy4832 181 TPVALTSGPDGSLYVGDF-NLVRRLTPE-GN-VFTVLQLSATQVSYQYYL--ALSPADG-HLYISDAEKHQILRVLSLES 254 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~-~~I~~i~~~-G~-v~~~~~~~~~~~~~p~~l--av~p~~g-~lyvsd~~~~~I~~i~~~~~ 254 (770)
...++++.+++.|..+.. +.|+.++.+ +. ....+. ..-..-..| ++.| ++ .++++-...+.|+.++..
T Consensus 268 ~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~---~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~-- 341 (524)
T 2j04_B 268 LITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQ---VHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPK-- 341 (524)
T ss_dssp CEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEE---CSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGG--
T ss_pred CEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEee---cccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECC--
Confidence 356788877766666665 478888765 32 122221 111234566 3454 66 788887777888777421
Q ss_pred ccCCCCc-EEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC-C-eEEECC-CCc-EEEeecCC
Q psy4832 255 VADPSIN-WEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT-N-IRVVSP-EGI-IHTLIGHH 329 (770)
Q Consensus 255 ~~~~~g~-~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~-~-Ir~id~-~G~-i~t~~g~~ 329 (770)
++. ...+.+.. .......|++.|++..+++-.. + |+..|. .+. +.++.+.
T Consensus 342 ----~~~~~~~~~~~~--------------------~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH- 396 (524)
T 2j04_B 342 ----DIATTKTTVSRF--------------------RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR- 396 (524)
T ss_dssp ----GHHHHCEEEEEC--------------------SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC-
T ss_pred ----CCCccccccccc--------------------ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC-
Confidence 111 00111100 0012357899998887666433 3 777763 332 2344432
Q ss_pred CCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcC
Q psy4832 330 KHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTN 379 (770)
Q Consensus 330 ~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~ 379 (770)
-.....|+++| ++.++++- .+.|+..+.
T Consensus 397 ---------------------~~~V~sva~Sp-~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 397 ---------------------ETTITAIGVSR-LHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp ---------------------SSCEEEEECCS-SCCBCEEEETTTEEECCBS
T ss_pred ---------------------CCceEEEEeCC-CCCeEEEEECCCEEEEEec
Confidence 12456899999 88765554 455655554
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.62 E-value=53 Score=36.30 Aligned_cols=67 Identities=22% Similarity=0.250 Sum_probs=40.6
Q ss_pred eeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCc-EEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEE
Q psy4832 430 LTALAFSPTGDLYIADIDARKVNALRVIDS-TGR-MFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALS 507 (770)
Q Consensus 430 P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~-i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~gia 507 (770)
...|+++|+|..+++-...+. |+..+. .+. +.++.|- .....+|+
T Consensus 358 v~~v~fsp~~~~l~s~~~d~t---v~lwd~~~~~~~~~l~gH------------------------------~~~V~sva 404 (524)
T 2j04_B 358 LVPVVYCPQIYSYIYSDGASS---LRAVPSRAAFAVHPLVSR------------------------------ETTITAIG 404 (524)
T ss_dssp CCCEEEETTTTEEEEECSSSE---EEEEETTCTTCCEEEEEC------------------------------SSCEEEEE
T ss_pred ccceEeCCCcCeEEEeCCCCc---EEEEECcccccceeeecC------------------------------CCceEEEE
Confidence 367899999988777655543 555553 232 1223221 12467889
Q ss_pred EcCCCcEEEEcCCCceEEeeec
Q psy4832 508 VSPDGVVNVADQGSLHILALQH 529 (770)
Q Consensus 508 v~~dG~lyvaD~~~~~I~~i~~ 529 (770)
++|+|.++++-...+.|+....
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBS
T ss_pred eCCCCCeEEEEECCCEEEEEec
Confidence 9999987776555566655443
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=83.99 E-value=37 Score=33.97 Aligned_cols=102 Identities=17% Similarity=0.241 Sum_probs=59.8
Q ss_pred CcceEEEeCCCCeEEEEe--CCEEEEEcCC-Cc-EEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccC
Q psy4832 353 WPTGLALSPLDDSLHFID--DRVIFKLTND-LK-VKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLG 428 (770)
Q Consensus 353 ~P~gla~d~~~g~lyv~D--~~~I~~i~~~-G~-v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 428 (770)
...+|+++| ++.+.++- .+.|+..+.. +. +..+.+.. .
T Consensus 15 ~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~-------------------------------------~ 56 (304)
T 2ynn_A 15 RVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQVTE-------------------------------------T 56 (304)
T ss_dssp CEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCS-------------------------------------S
T ss_pred ceEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEeeccC-------------------------------------C
Confidence 457899999 78765554 5677777743 43 22332210 1
Q ss_pred CeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCc-EEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEE
Q psy4832 429 SLTALAFSPTGDLYIADIDARKVNALRVIDS-TGR-MFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISAL 506 (770)
Q Consensus 429 ~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~-i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~gi 506 (770)
....+++.++|+++++-...+. |+..+. +|+ +..+.+.. ....+|
T Consensus 57 ~v~~~~~~~~~~~l~s~s~d~~---i~vwd~~~~~~~~~~~~h~------------------------------~~v~~~ 103 (304)
T 2ynn_A 57 PVRAGKFIARKNWIIVGSDDFR---IRVFNYNTGEKVVDFEAHP------------------------------DYIRSI 103 (304)
T ss_dssp CEEEEEEEGGGTEEEEEETTSE---EEEEETTTCCEEEEEECCS------------------------------SCEEEE
T ss_pred cEEEEEEeCCCCEEEEECCCCE---EEEEECCCCcEEEEEeCCC------------------------------CcEEEE
Confidence 2477889999987777666554 555553 343 33332211 235679
Q ss_pred EEcCCCcEEEEcCCCceEE
Q psy4832 507 SVSPDGVVNVADQGSLHIL 525 (770)
Q Consensus 507 av~~dG~lyvaD~~~~~I~ 525 (770)
+++|++.++++-...+.|+
T Consensus 104 ~~~~~~~~l~sgs~D~~v~ 122 (304)
T 2ynn_A 104 AVHPTKPYVLSGSDDLTVK 122 (304)
T ss_dssp EECSSSSEEEEEETTSCEE
T ss_pred EEcCCCCEEEEECCCCeEE
Confidence 9999988776644444443
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=83.93 E-value=60 Score=36.34 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=38.7
Q ss_pred CCCEEEEeC--ceEEEEcC--CCcEEEEeccCccccc--------ceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 190 DGSLYVGDF--NLVRRLTP--EGNVFTVLQLSATQVS--------YQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 190 dG~lyv~d~--~~I~~i~~--~G~v~~~~~~~~~~~~--------~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
+|.||++.. +.|..+|. +|++.-........-. ...+++++ ++.||+... +++++.++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~~-dg~l~alD 131 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQA-NGHLLALD 131 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECT-TSEEEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE--CCEEEEEeC-CCEEEEEE
Confidence 788999887 57999996 7998866543221100 11356776 688888854 46788885
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 770 | ||||
| d2p4oa1 | 302 | b.68.6.3 (A:4-305) Hypothetical protein All0351 ho | 4e-04 |
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Score = 40.8 bits (94), Expect = 4e-04
Identities = 35/320 (10%), Positives = 83/320 (25%), Gaps = 53/320 (16%)
Query: 212 TVLQLSATQVSYQYY-------LALSPADGHLYISDAEKHQILRVLSLESVADPSINWEV 264
++L+ ++ + LA +P DG +++++ E +I+ + P N ++
Sbjct: 11 KPIELAPAKIITSFPVNTFLENLASAP-DGTIFVTNHEVGEIVSI-------TPDGNQQI 62
Query: 265 AVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTNIRVVSPEGIIHT 324
GLA ++ + + +
Sbjct: 63 HATVE----------------------GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD 100
Query: 325 LIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFKLTNDLKVK 384
+ F + + T L + L D + + L
Sbjct: 101 GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWL--EHPMLARS 158
Query: 385 IVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDD------SVRASNMDLGSLTALAFSPT 438
+ + ++ ++ ++ AF
Sbjct: 159 NSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVE 218
Query: 439 GDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCA--EFEKNSKETLLTS 496
G+LY A N++ I A +++ +T A + E + + +
Sbjct: 219 GNLYGATHIY---NSVVRIAPDRSTTIIAQ---AEQGVIGSTAVAFGQTEGDCTAIYVVT 272
Query: 497 TARFTSISALSVSPDGVVNV 516
V P VV +
Sbjct: 273 NGGMFLPPPTGVVPANVVRL 292
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 770 | |||
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.95 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.95 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.91 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.89 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.89 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.82 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.81 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.8 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.79 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 99.79 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 99.77 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.75 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.75 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.65 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.55 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.44 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 99.28 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.21 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.11 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.04 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.0 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 98.97 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.7 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.67 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.52 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.35 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.98 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 97.94 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 97.93 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 97.93 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.89 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 97.88 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.83 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.81 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 97.8 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.74 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 97.73 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.66 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 97.65 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 97.6 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 97.53 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 97.5 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.41 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 97.37 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.36 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.19 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 97.17 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.18 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 95.99 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 95.18 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 94.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 94.15 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 93.78 | |
| d1tl2a_ | 235 | Tachylectin-2 {Japanese horseshoe crab (Tachypleus | 93.7 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 93.42 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 92.63 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 92.61 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 92.13 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 92.02 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 91.94 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 91.77 | |
| d1tl2a_ | 235 | Tachylectin-2 {Japanese horseshoe crab (Tachypleus | 90.09 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 90.05 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 88.03 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 84.83 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 82.43 |
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.95 E-value=1e-25 Score=234.49 Aligned_cols=244 Identities=14% Similarity=0.257 Sum_probs=190.5
Q ss_pred cccccCceEEEEcCCCCEEEEeC--ceEEEEcCCCcEEEEeccC---cccccceeEEEEeCCCCcEEEE-eCCCcEEEEE
Q psy4832 176 DARLLTPVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLS---ATQVSYQYYLALSPADGHLYIS-DAEKHQILRV 249 (770)
Q Consensus 176 ~~~l~~P~~la~~~dG~lyv~d~--~~I~~i~~~G~v~~~~~~~---~~~~~~p~~lav~p~~g~lyvs-d~~~~~I~~i 249 (770)
..+|..|.+||++++|+|||+|. ++|++++++|+..+.++.. ......|.++++.+..+..+++ +..+++|.++
T Consensus 19 ~g~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~ 98 (279)
T d1q7fa_ 19 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 98 (279)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CCeECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccc
Confidence 45799999999999999999997 5999999999998877542 3456789999988666665554 5567788888
Q ss_pred eccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCCCcEEEeec
Q psy4832 250 LSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIG 327 (770)
Q Consensus 250 ~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~G~i~t~~g 327 (770)
+++|......+. ..+..|.+++++++|.+|++|..+ +.+++++|.+...++
T Consensus 99 -------~~~g~~~~~~~~--------------------~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g 151 (279)
T d1q7fa_ 99 -------NQYGQFVRKFGA--------------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFG 151 (279)
T ss_dssp -------CTTSCEEEEECT--------------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEE
T ss_pred -------cccccceeecCC--------------------CcccccceeccccCCcEEEEeeccceeeEeccCCceeeccc
Confidence 567776554432 235689999999999999999876 889999998766554
Q ss_pred CCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccc
Q psy4832 328 HHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKD 405 (770)
Q Consensus 328 ~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~ 405 (770)
.. ..+.+|.+|++++ +++|||+| +++|++++++|+.....|.+
T Consensus 152 ~~-------------------~~~~~~~~i~~d~-~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~--------------- 196 (279)
T d1q7fa_ 152 CS-------------------KHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEGQYLRQIGGE--------------- 196 (279)
T ss_dssp CT-------------------TTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTCCEEEEESCT---------------
T ss_pred cc-------------------ccccccceeeecc-ceeEEeeeccccceeeeecCCceeeeeccc---------------
Confidence 32 2477899999999 99999999 58999999999865444321
Q ss_pred cccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCccc
Q psy4832 406 KQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEF 485 (770)
Q Consensus 406 ~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~ 485 (770)
..+..|.||++|++|+|||||..++. +|.+++++|++....+..
T Consensus 197 -------------------g~~~~P~giavD~~G~i~Vad~~~~~--~v~~f~~~G~~~~~~~~~--------------- 240 (279)
T d1q7fa_ 197 -------------------GITNYPIGVGINSNGEILIADNHNNF--NLTIFTQDGQLISALESK--------------- 240 (279)
T ss_dssp -------------------TTSCSEEEEEECTTCCEEEEECSSSC--EEEEECTTSCEEEEEEES---------------
T ss_pred -------------------ccccCCcccccccCCeEEEEECCCCc--EEEEECCCCCEEEEEeCC---------------
Confidence 23577999999999999999987653 478899999864433221
Q ss_pred ccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeecC
Q psy4832 486 EKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHY 530 (770)
Q Consensus 486 ~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~ 530 (770)
..+..|.+||+++||.|||+| .|++|++++..
T Consensus 241 ------------~~~~~p~~vav~~dG~l~V~~-~n~~v~~fr~~ 272 (279)
T d1q7fa_ 241 ------------VKHAQCFDVALMDDGSVVLAS-KDYRLYIYRYV 272 (279)
T ss_dssp ------------SCCSCEEEEEEETTTEEEEEE-TTTEEEEEECS
T ss_pred ------------CCCCCEeEEEEeCCCcEEEEe-CCCeEEEEEee
Confidence 113469999999999999999 57888877554
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.95 E-value=2e-26 Score=237.25 Aligned_cols=236 Identities=19% Similarity=0.283 Sum_probs=180.3
Q ss_pred ccCceEEEEcCCCCEEEEeC---ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCc
Q psy4832 179 LLTPVALTSGPDGSLYVGDF---NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESV 255 (770)
Q Consensus 179 l~~P~~la~~~dG~lyv~d~---~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~ 255 (770)
...|.+||+|++|+|||++. ++|.++++++...+.+. ...+..|.+|++++ +|+|||+|..+++|.+..
T Consensus 13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~----- 84 (260)
T d1rwia_ 13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP--FNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAA----- 84 (260)
T ss_dssp CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECC--CCSCCSCCCEEECT-TCCEEEEETTTEEEEECT-----
T ss_pred cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec--cCCccCceEEEEcC-CCCEEEeeeeeceeeeee-----
Confidence 46899999999999999986 48999998887777664 34678899999996 899999999987776542
Q ss_pred cCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCCCcEEEeecCCCCCC
Q psy4832 256 ADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHN 333 (770)
Q Consensus 256 ~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~ 333 (770)
.++...+... ..+..|.+|+++++|+||++|..+ +.+++.++.........
T Consensus 85 ---~~~~~~~~~~--------------------~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~---- 137 (260)
T d1rwia_ 85 ---GSNNQTVLPF--------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT---- 137 (260)
T ss_dssp ---TCSCCEECCC--------------------CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC----
T ss_pred ---eccceeeeee--------------------eeeeecccccccccceeEeeccccccccccccccceeeeeeec----
Confidence 2222222211 125689999999999999999766 88888877555444322
Q ss_pred CcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccc
Q psy4832 334 IWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTK 411 (770)
Q Consensus 334 ~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~ 411 (770)
.+..|.+|++++ +|+||++| +++|++++.++.......
T Consensus 138 ----------------~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~~~~~~~~----------------------- 177 (260)
T d1rwia_ 138 ----------------GLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLP----------------------- 177 (260)
T ss_dssp ----------------SCCSCCEEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECC-----------------------
T ss_pred ----------------ccCCcceeeecC-CCCEeeeccccccccccccccceeeeee-----------------------
Confidence 367899999999 99999999 589999998876544432
Q ss_pred cccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccC
Q psy4832 412 KSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKE 491 (770)
Q Consensus 412 ~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d 491 (770)
...+..|.+|++|++|+|||+|..+++ |.++++++...++..
T Consensus 178 ------------~~~~~~p~gi~~d~~g~l~vsd~~~~~---i~~~~~~~~~~~~~~----------------------- 219 (260)
T d1rwia_ 178 ------------FTDITAPWGIAVDEAGTVYVTEHNTNQ---VVKLLAGSTTSTVLP----------------------- 219 (260)
T ss_dssp ------------CSSCCSEEEEEECTTCCEEEEETTTTE---EEEECTTCSCCEECC-----------------------
T ss_pred ------------ccccCCCccceeeeeeeeeeeecCCCE---EEEEeCCCCeEEEEc-----------------------
Confidence 123567999999999999999999986 677788776544431
Q ss_pred cccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeecCCc
Q psy4832 492 TLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYLP 532 (770)
Q Consensus 492 ~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~~~ 532 (770)
...|..|.+|+++++|.|||+|.+++||++|+...+
T Consensus 220 -----~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~~ 255 (260)
T d1rwia_ 220 -----FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 255 (260)
T ss_dssp -----CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred -----cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCCC
Confidence 122678999999999999999999999999987654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.91 E-value=3.2e-23 Score=213.00 Aligned_cols=234 Identities=19% Similarity=0.297 Sum_probs=171.5
Q ss_pred cCCCeEEECCCccEEeccc-CCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCCEEEEeC-ceEEEEcCC
Q psy4832 130 FHEGILQKGDGSSLHLKHE-FPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDF-NLVRRLTPE 207 (770)
Q Consensus 130 ~~~gil~~~dG~~~~~~~~-~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~-~~I~~i~~~ 207 (770)
.|.||+.+.+| ++|+++. ..++|..+...+..... .....+..|.+|+++++|+|||+|. +.+.++..+
T Consensus 15 ~P~~vavd~dG-~i~v~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~ 85 (260)
T d1rwia_ 15 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTV--------LPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAG 85 (260)
T ss_dssp CEEEEEECTTC-CEEEEECSSSCEEEEEC----CEEE--------CCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTT
T ss_pred CCCEEEEcCCC-CEEEEEcCCCCEEEEEcCCCceEEE--------eccCCccCceEEEEcCCCCEEEeeeeeceeeeeee
Confidence 58899999999 4777653 34566666544333211 1223467899999999999999998 455555566
Q ss_pred CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccc
Q psy4832 208 GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPAL 287 (770)
Q Consensus 208 G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~ 287 (770)
+....++. ...+..|.+|++++ +|+||++|..++++.++. +.+....+...
T Consensus 86 ~~~~~~~~--~~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~-------~~~~~~~~~~~------------------- 136 (260)
T d1rwia_ 86 SNNQTVLP--FDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLA-------AGSKTQTVLPF------------------- 136 (260)
T ss_dssp CSCCEECC--CCSCCSEEEEEECT-TCCEEEEEGGGTEEEEEC-------TTCSSCEECCC-------------------
T ss_pred ccceeeee--eeeeeecccccccc-cceeEeeccccccccccc-------cccceeeeeee-------------------
Confidence 65555543 34578899999996 899999999999999984 34433222211
Q ss_pred cccccCcceEEEccCCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe
Q psy4832 288 AAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS 365 (770)
Q Consensus 288 ~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~ 365 (770)
..+..|.+|+++++|++|++|..+ |.+++.++.....+.. ..+.+|.+|++|+ +|+
T Consensus 137 -~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~--------------------~~~~~p~gi~~d~-~g~ 194 (260)
T d1rwia_ 137 -TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF--------------------TDITAPWGIAVDE-AGT 194 (260)
T ss_dssp -CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC--------------------SSCCSEEEEEECT-TCC
T ss_pred -cccCCcceeeecCCCCEeeeccccccccccccccceeeeeec--------------------cccCCCccceeee-eee
Confidence 126689999999999999999776 9999988865544422 2477899999999 999
Q ss_pred EEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEE
Q psy4832 366 LHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYI 443 (770)
Q Consensus 366 lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyV 443 (770)
|||+| +++|+++++++....+.. ...|..|.+|+++++|+|||
T Consensus 195 l~vsd~~~~~i~~~~~~~~~~~~~~-----------------------------------~~~~~~P~~i~~d~~g~l~v 239 (260)
T d1rwia_ 195 VYVTEHNTNQVVKLLAGSTTSTVLP-----------------------------------FTGLNTPLAVAVDSDRTVYV 239 (260)
T ss_dssp EEEEETTTTEEEEECTTCSCCEECC-----------------------------------CCSCCCEEEEEECTTCCEEE
T ss_pred eeeeecCCCEEEEEeCCCCeEEEEc-----------------------------------cCCCCCeEEEEEeCCCCEEE
Confidence 99999 689999998876544432 12356799999999999999
Q ss_pred EeCCCCceeeEEEEcCCC
Q psy4832 444 ADIDARKVNALRVIDSTG 461 (770)
Q Consensus 444 aD~~~~ri~~i~~i~~~G 461 (770)
||..++| |+++++.+
T Consensus 240 ad~~~~r---I~~i~~~~ 254 (260)
T d1rwia_ 240 ADRGNDR---VVKLTSLE 254 (260)
T ss_dssp EEGGGTE---EEEECCCG
T ss_pred EECCCCE---EEEEeCCC
Confidence 9999986 67776544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.89 E-value=9.6e-22 Score=204.01 Aligned_cols=248 Identities=15% Similarity=0.248 Sum_probs=188.6
Q ss_pred CCCCccceeeeeecCCCeEEECCCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCC-CCEEE
Q psy4832 117 IGGWSLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPD-GSLYV 195 (770)
Q Consensus 117 ~ggw~l~~~~~~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~d-G~lyv 195 (770)
+|+|..... +|+.|.||++..+| ++||++..++.|.++..+|..... ....+ ........|.+++++.+ +..++
T Consensus 12 ~G~~G~~~g-~f~~P~gvavd~dg-~i~VaD~~n~rI~v~d~~G~~~~~--~~~~~-~~~~~~~~p~~~~~~~~~~~~~~ 86 (279)
T d1q7fa_ 12 FGEFGVMEG-QFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKEGRFKFQ--FGECG-KRDSQLLYPNRVAVVRNSGDIIV 86 (279)
T ss_dssp ECCBSSSTT-CBSCEEEEEECTTC-CEEEEEGGGTEEEEECTTSCEEEE--ECCBS-SSTTCBSSEEEEEEETTTTEEEE
T ss_pred cCCCcCCCC-eECCccEEEEcCCC-CEEEEECCCCEEEEEeCCCCEEEE--ecccC-CCcccccccccccccccccccce
Confidence 366665432 58899999999999 599999889999999887764211 01111 22456679999998764 55555
Q ss_pred EeC---ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccc
Q psy4832 196 GDF---NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERC 272 (770)
Q Consensus 196 ~d~---~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~ 272 (770)
+.. ++|++++++|.....+. ...+..|.++++++ +|.+|+++..++++.++ +++|++....+..
T Consensus 87 ~~~~~~~~i~~~~~~g~~~~~~~--~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~-------~~~g~~~~~~g~~--- 153 (279)
T d1q7fa_ 87 TERSPTHQIQIYNQYGQFVRKFG--ATILQHPRGVTVDN-KGRIIVVECKVMRVIIF-------DQNGNVLHKFGCS--- 153 (279)
T ss_dssp EECGGGCEEEEECTTSCEEEEEC--TTTCSCEEEEEECT-TSCEEEEETTTTEEEEE-------CTTSCEEEEEECT---
T ss_pred eccCCccccccccccccceeecC--CCcccccceecccc-CCcEEEEeeccceeeEe-------ccCCceeeccccc---
Confidence 543 48999999999888775 45688999999996 89999999999999999 6778765544321
Q ss_pred cCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCccCCCccccccc
Q psy4832 273 IPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQ 350 (770)
Q Consensus 273 ~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~ 350 (770)
..+..|.+|+++++|+||++|..+ |++++++|.....++.. ..
T Consensus 154 ----------------~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~-------------------g~ 198 (279)
T d1q7fa_ 154 ----------------KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGE-------------------GI 198 (279)
T ss_dssp ----------------TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCT-------------------TT
T ss_pred ----------------ccccccceeeeccceeEEeeeccccceeeeecCCceeeeeccc-------------------cc
Confidence 236689999999999999999876 99999999866555432 24
Q ss_pred ccCcceEEEeCCCCeEEEEe---CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCccccccccc
Q psy4832 351 LQWPTGLALSPLDDSLHFID---DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDL 427 (770)
Q Consensus 351 l~~P~gla~d~~~g~lyv~D---~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 427 (770)
+..|.||++|+ +|+|||+| +++|.+++++|++....+.+. .+
T Consensus 199 ~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~----------------------------------~~ 243 (279)
T d1q7fa_ 199 TNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISALESKV----------------------------------KH 243 (279)
T ss_dssp SCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEEEEESS----------------------------------CC
T ss_pred ccCCccccccc-CCeEEEEECCCCcEEEEECCCCCEEEEEeCCC----------------------------------CC
Confidence 77899999999 99999999 357999999998544332211 12
Q ss_pred CCeeEEEEcCCCCEEEEeCCCCceee
Q psy4832 428 GSLTALAFSPTGDLYIADIDARKVNA 453 (770)
Q Consensus 428 ~~P~giavd~~G~lyVaD~~~~ri~~ 453 (770)
..|.+||++++|.|||++. +++|..
T Consensus 244 ~~p~~vav~~dG~l~V~~~-n~~v~~ 268 (279)
T d1q7fa_ 244 AQCFDVALMDDGSVVLASK-DYRLYI 268 (279)
T ss_dssp SCEEEEEEETTTEEEEEET-TTEEEE
T ss_pred CCEeEEEEeCCCcEEEEeC-CCeEEE
Confidence 4699999999999999995 676533
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.89 E-value=2e-21 Score=205.05 Aligned_cols=246 Identities=13% Similarity=0.191 Sum_probs=176.6
Q ss_pred cccccCceEEEEcCCCCEEEEeC---------ceEEEEcCCCcEEEEeccC--cccccceeEEEEeCCCCcEEEEeCCCc
Q psy4832 176 DARLLTPVALTSGPDGSLYVGDF---------NLVRRLTPEGNVFTVLQLS--ATQVSYQYYLALSPADGHLYISDAEKH 244 (770)
Q Consensus 176 ~~~l~~P~~la~~~dG~lyv~d~---------~~I~~i~~~G~v~~~~~~~--~~~~~~p~~lav~p~~g~lyvsd~~~~ 244 (770)
...|..|.++++|++|+||+++. ++|.|+++++...+++... ......|.+|++++..+.||++|.. +
T Consensus 14 ~~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~-~ 92 (314)
T d1pjxa_ 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-L 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-T
T ss_pred ecCCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC-C
Confidence 34577899999999999999875 3799999876554444321 1223469999999855578999875 5
Q ss_pred EEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC-------------
Q psy4832 245 QILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT------------- 311 (770)
Q Consensus 245 ~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~------------- 311 (770)
+|+++ ++++....++.... + ...|+.|+++++|++|+|||+|..
T Consensus 93 ~i~~~-------~~~g~~~~~~~~~~-----------~-----g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~ 149 (314)
T d1pjxa_ 93 GLLVV-------QTDGTFEEIAKKDS-----------E-----GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ 149 (314)
T ss_dssp EEEEE-------ETTSCEEECCSBCT-----------T-----SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred eEEEE-------eCCCcEEEEEeccc-----------c-----ccccCCCcEEEECCCCCEEEecCccCcccccccceec
Confidence 78888 57777665543211 1 134778999999999999999853
Q ss_pred ----CeEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-----eEEEEe--CCEEEEEc--
Q psy4832 312 ----NIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-----SLHFID--DRVIFKLT-- 378 (770)
Q Consensus 312 ----~Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-----~lyv~D--~~~I~~i~-- 378 (770)
.|++++++|.+..+.. .+..|+||++++ ++ .|||+| +++|++++
T Consensus 150 ~~~G~v~~~~~dg~~~~~~~----------------------~~~~pNGi~~~~-d~d~~~~~lyv~d~~~~~i~~~d~~ 206 (314)
T d1pjxa_ 150 EKFGSIYCFTTDGQMIQVDT----------------------AFQFPNGIAVRH-MNDGRPYQLIVAETPTKKLWSYDIK 206 (314)
T ss_dssp SSCEEEEEECTTSCEEEEEE----------------------EESSEEEEEEEE-CTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred cCCceEEEEeecCceeEeeC----------------------CcceeeeeEECC-CCCcceeEEEEEeecccceEEeecc
Confidence 2677888887666542 366899999998 54 499999 58999986
Q ss_pred CCCcEEE---EecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEE
Q psy4832 379 NDLKVKI---VAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALR 455 (770)
Q Consensus 379 ~~G~v~~---vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~ 455 (770)
.+|.+.. ++..+ ......|.||++|++|+||||+..+++ |+
T Consensus 207 ~~g~~~~~~~~~~~~---------------------------------~~~~~~pdGiavD~~GnlyVa~~~~g~---I~ 250 (314)
T d1pjxa_ 207 GPAKIENKKVWGHIP---------------------------------GTHEGGADGMDFDEDNNLLVANWGSSH---IE 250 (314)
T ss_dssp ETTEEEEEEEEEECC---------------------------------CCSSCEEEEEEEBTTCCEEEEEETTTE---EE
T ss_pred CccccceeeEEEEcc---------------------------------ccccccceeeEEecCCcEEEEEcCCCE---EE
Confidence 4555431 11110 011235999999999999999998875 78
Q ss_pred EEcCCC-cEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCC-cEEEEcCCCceEEeeecCCcc
Q psy4832 456 VIDSTG-RMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDG-VVNVADQGSLHILALQHYLPT 533 (770)
Q Consensus 456 ~i~~~G-~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG-~lyvaD~~~~~I~~i~~~~~~ 533 (770)
+++++| ++......+ ...|+++|+.+|+ +|||++..+++|++++...+.
T Consensus 251 ~~dp~~g~~~~~i~~p-----------------------------~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 251 VFGPDGGQPKMRIRCP-----------------------------FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EECTTCBSCSEEEECS-----------------------------SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred EEeCCCCEEEEEEECC-----------------------------CCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence 889874 322211111 2358999999998 599999999999999876654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.82 E-value=4.1e-18 Score=179.41 Aligned_cols=208 Identities=19% Similarity=0.221 Sum_probs=151.5
Q ss_pred cccccceeEEEEeCCCCcEEEEeCC-------CcEEEEEeccCCccCCC-CcEEEEECCCccccCCCCCCcCCCcccccc
Q psy4832 218 ATQVSYQYYLALSPADGHLYISDAE-------KHQILRVLSLESVADPS-INWEVAVGSGERCIPGDETNCGDNGPALAA 289 (770)
Q Consensus 218 ~~~~~~p~~lav~p~~g~lyvsd~~-------~~~I~~i~~~~~~~~~~-g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a 289 (770)
...+..|.|+++++ +|+||+++.. +++|+++ ++. +..+.+... .. ..
T Consensus 14 ~~~~~g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~-------d~~~~~~~~~~~~-~~----------------~~ 68 (314)
T d1pjxa_ 14 TEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRI-------DLKTGKKTVICKP-EV----------------NG 68 (314)
T ss_dssp ECCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEE-------CTTTCCEEEEECC-EE----------------TT
T ss_pred ecCCCCCeEeEEeC-CCCEEEEECccccccccCCEEEEE-------ECCCCcEEEEECC-cc----------------cc
Confidence 35788899999997 8999999865 4689999 444 344444321 11 01
Q ss_pred cccCcceEEEccCCc-EEEEeCCC-eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEE
Q psy4832 290 KLSHPKGLAIKADKT-MFIADGTN-IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLH 367 (770)
Q Consensus 290 ~l~~P~gIavd~~G~-lYvaD~~~-Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~ly 367 (770)
....|.||+++++|+ ||++|..+ |++++++|...+++..... ...|+.|+++++++ +|+||
T Consensus 69 ~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~----------------g~~~~~pndl~~d~-~G~ly 131 (314)
T d1pjxa_ 69 YGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSE----------------GRRMQGCNDCAFDY-EGNLW 131 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTT----------------SCBCBCCCEEEECT-TSCEE
T ss_pred CCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEecccc----------------ccccCCCcEEEECC-CCCEE
Confidence 122599999999986 89999877 9999999988777644321 12477899999999 99999
Q ss_pred EEeC-----------------CEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCe
Q psy4832 368 FIDD-----------------RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSL 430 (770)
Q Consensus 368 v~D~-----------------~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P 430 (770)
|+|. ++|++++++|++..++. .+..|
T Consensus 132 vtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~-------------------------------------~~~~p 174 (314)
T d1pjxa_ 132 ITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDT-------------------------------------AFQFP 174 (314)
T ss_dssp EEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEE-------------------------------------EESSE
T ss_pred EecCccCcccccccceeccCCceEEEEeecCceeEeeC-------------------------------------Cccee
Confidence 9982 37899999888766552 24569
Q ss_pred eEEEEcCCCC-----EEEEeCCCCceeeEEEEcCCCcEEEe--ecCccCCCCCcCCCCCcccccCccCcccccceecCCe
Q psy4832 431 TALAFSPTGD-----LYIADIDARKVNALRVIDSTGRMFDF--AGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSI 503 (770)
Q Consensus 431 ~giavd~~G~-----lyVaD~~~~ri~~i~~i~~~G~i~~~--aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P 503 (770)
+||+++++++ |||+|+.+++|.++. ++.+|.+..- .... .......|
T Consensus 175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d-~~~~g~~~~~~~~~~~-------------------------~~~~~~~p 228 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYD-IKGPAKIENKKVWGHI-------------------------PGTHEGGA 228 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEE-EEETTEEEEEEEEEEC-------------------------CCCSSCEE
T ss_pred eeeEECCCCCcceeEEEEEeecccceEEee-ccCccccceeeEEEEc-------------------------cccccccc
Confidence 9999998764 999999998765543 3456665321 1000 00112359
Q ss_pred eEEEEcCCCcEEEEcCCCceEEeeecC
Q psy4832 504 SALSVSPDGVVNVADQGSLHILALQHY 530 (770)
Q Consensus 504 ~giav~~dG~lyvaD~~~~~I~~i~~~ 530 (770)
.||++|++|+|||++.++++|+++.+.
T Consensus 229 dGiavD~~GnlyVa~~~~g~I~~~dp~ 255 (314)
T d1pjxa_ 229 DGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence 999999999999999999999999765
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.81 E-value=8e-19 Score=185.40 Aligned_cols=200 Identities=15% Similarity=0.201 Sum_probs=141.5
Q ss_pred ceEEEEcCCCCEEEEeC--ceEEEEcCCCcE-EEEeccCcccccceeEEEEeCCCCcEEEEeCC----CcEEEEEeccCC
Q psy4832 182 PVALTSGPDGSLYVGDF--NLVRRLTPEGNV-FTVLQLSATQVSYQYYLALSPADGHLYISDAE----KHQILRVLSLES 254 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~--~~I~~i~~~G~v-~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~----~~~I~~i~~~~~ 254 (770)
..++++|++|+|||+|. ++|.|++++|.. ..++ ......|.+|++++ +|+|||++.. ...|.+++
T Consensus 42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~---~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~---- 113 (319)
T d2dg1a1 42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF---VSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAAT---- 113 (319)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE---ECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEEC----
T ss_pred cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE---eCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEc----
Confidence 47999999999999996 699999998764 3333 23345799999997 8999999864 34677773
Q ss_pred ccCCCC-cEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--------eEEECCCCc-EEE
Q psy4832 255 VADPSI-NWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--------IRVVSPEGI-IHT 324 (770)
Q Consensus 255 ~~~~~g-~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--------Ir~id~~G~-i~t 324 (770)
..+ .+..+.... .....|++++++++|+|||+|..+ +.+++++|. +..
T Consensus 114 ---~~~~~~~~~~~~~-------------------~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~ 171 (319)
T d2dg1a1 114 ---ENGDNLQDIIEDL-------------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP 171 (319)
T ss_dssp ---TTSCSCEEEECSS-------------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE
T ss_pred ---CCCceeeeeccCC-------------------CcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEE
Confidence 332 233333211 124578999999999999998642 778888874 444
Q ss_pred eecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEe--CCEEEEEc--CCCcEEEEecCCCCCCCCCCC
Q psy4832 325 LIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID--DRVIFKLT--NDLKVKIVAGIPLHCRTGDKD 399 (770)
Q Consensus 325 ~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~--~~G~v~~vaG~~~~~~~~~~~ 399 (770)
+.. .+..|+||++++ ++ .|||+| +++|++++ .+|......+...
T Consensus 172 ~~~----------------------~~~~pnGia~s~-dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~-------- 220 (319)
T d2dg1a1 172 IIQ----------------------NISVANGIALST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATI-------- 220 (319)
T ss_dssp EEE----------------------EESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE--------
T ss_pred Eee----------------------ccceeeeeeecc-ccceEEEecccCCceEEEEEcCCCceecccccee--------
Confidence 431 366799999999 65 599999 58999997 3443221111000
Q ss_pred CccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEe
Q psy4832 400 KRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDF 466 (770)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~ 466 (770)
......+..|.||++|++|+||||+..+++ |.+++++|++...
T Consensus 221 ---------------------~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~---V~~~~p~G~~l~~ 263 (319)
T d2dg1a1 221 ---------------------PYYFTGHEGPDSCCIDSDDNLYVAMYGQGR---VLVFNKRGYPIGQ 263 (319)
T ss_dssp ---------------------EEECCSSSEEEEEEEBTTCCEEEEEETTTE---EEEECTTSCEEEE
T ss_pred ---------------------eeccCCccceeeeeEcCCCCEEEEEcCCCE---EEEECCCCcEEEE
Confidence 001122345999999999999999999875 7899999986543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.80 E-value=5e-18 Score=177.70 Aligned_cols=237 Identities=17% Similarity=0.157 Sum_probs=168.8
Q ss_pred CceEEEEcCCCCEEEEeC--ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC
Q psy4832 181 TPVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP 258 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~--~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~ 258 (770)
.|.+||++|||+|||+|. ++|++++++|+...+... ...|.+|++++ +|+|||++...+.+.++... ..
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~----~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~----~~ 99 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATV----EGKVSGLAFTS-NGDLVATGWNADSIPVVSLV----KS 99 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEEC----SSEEEEEEECT-TSCEEEEEECTTSCEEEEEE----CT
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcC----CCCcceEEEcC-CCCeEEEecCCceEEEEEec----cc
Confidence 478999999999999998 599999999998877643 35799999997 89999999988888777542 23
Q ss_pred CCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcC
Q psy4832 259 SINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWS 336 (770)
Q Consensus 259 ~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~ 336 (770)
.+....++... ....|++|+++++|++|+++..+ |++++.++....+.-.....
T Consensus 100 ~~~~~~~~~~~--------------------~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---- 155 (302)
T d2p4oa1 100 DGTVETLLTLP--------------------DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPML---- 155 (302)
T ss_dssp TSCEEEEEECT--------------------TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGG----
T ss_pred ccceeeccccC--------------------CccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCcc----
Confidence 45555554321 13368999999999999999876 99998776444333211110
Q ss_pred CCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCcccccccccccccc
Q psy4832 337 PFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKST 414 (770)
Q Consensus 337 p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (770)
........+..|.+|+.+ ++.||+++ +++|++++.++......
T Consensus 156 ------~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~--------------------------- 200 (302)
T d2p4oa1 156 ------ARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGE--------------------------- 200 (302)
T ss_dssp ------SCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCC---------------------------
T ss_pred ------ceeeccCccccccccccc--CCceeeecCCCCeEEeccccccccccc---------------------------
Confidence 001112345678999998 68899999 58999988543210000
Q ss_pred ccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCccc
Q psy4832 415 VQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLL 494 (770)
Q Consensus 415 ~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~ 494 (770)
.........|.+|++|++|+||||+..+++ |.+++++|++..++...
T Consensus 201 ------~~~~~~~~~pdgia~d~dG~l~va~~~~~~---V~~i~p~G~~~~~~~~~------------------------ 247 (302)
T d2p4oa1 201 ------PEIFVEQTNIDDFAFDVEGNLYGATHIYNS---VVRIAPDRSTTIIAQAE------------------------ 247 (302)
T ss_dssp ------CEEEEESCCCSSEEEBTTCCEEEECBTTCC---EEEECTTCCEEEEECGG------------------------
T ss_pred ------cccccCCCCCcceEECCCCCEEEEEcCCCc---EEEECCCCCEEEEEecC------------------------
Confidence 001112356899999999999999988875 78889999987776432
Q ss_pred ccceecCCeeEEEEc---CCC-cEEEEcCCC
Q psy4832 495 TSTARFTSISALSVS---PDG-VVNVADQGS 521 (770)
Q Consensus 495 ~~~~~l~~P~giav~---~dG-~lyvaD~~~ 521 (770)
..+..|.++|++ +|+ .|||+..++
T Consensus 248 ---~~~~~pt~vafg~~~~D~~~Lyvtt~~g 275 (302)
T d2p4oa1 248 ---QGVIGSTAVAFGQTEGDCTAIYVVTNGG 275 (302)
T ss_dssp ---GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ---CCCCCceEEEEcCCCCCCCEEEEECCCC
Confidence 124669999994 455 689987654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=8.3e-18 Score=172.45 Aligned_cols=227 Identities=16% Similarity=0.210 Sum_probs=162.4
Q ss_pred CEEEEeCceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCcc
Q psy4832 192 SLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGER 271 (770)
Q Consensus 192 ~lyv~d~~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~ 271 (770)
.|+++..+.|++++.++.-.+.+ ...+..+.+|++|+.++.||++|...+.|++....+. ...+..+.+.
T Consensus 3 fLl~s~~~~I~~~~l~~~~~~~~---~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~--~~~~~~~~~~----- 72 (266)
T d1ijqa1 3 YLFFTNRHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRA--HGVSSYDTVI----- 72 (266)
T ss_dssp EEEEECBSSEEEEETTSCCCEEE---ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------CEEEE-----
T ss_pred EEEEECCCeEEEEECCCCcceee---eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCC--CCCcceEEEE-----
Confidence 47888888999999887654433 2356788999999989999999999999998853211 0011112222
Q ss_pred ccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCccCCCccccc
Q psy4832 272 CIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPAST 348 (770)
Q Consensus 272 ~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~ 348 (770)
...+..|.|||+|. .++||++|... |.+.+.+|........
T Consensus 73 ----------------~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~-------------------- 116 (266)
T d1ijqa1 73 ----------------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-------------------- 116 (266)
T ss_dssp ----------------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE--------------------
T ss_pred ----------------eCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEc--------------------
Confidence 12256799999996 77899999776 9999988854332211
Q ss_pred ccccCcceEEEeCCCCeEEEEe---CCEEEEEcCCCc-EEEEecCCCCCCCCCCCCccccccccccccccccCCcccccc
Q psy4832 349 AQLQWPTGLALSPLDDSLHFID---DRVIFKLTNDLK-VKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASN 424 (770)
Q Consensus 349 ~~l~~P~gla~d~~~g~lyv~D---~~~I~~i~~~G~-v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 424 (770)
..+..|.+|+++|..|.||++| ..+|++.+.||. .+.+..
T Consensus 117 ~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~------------------------------------ 160 (266)
T d1ijqa1 117 ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT------------------------------------ 160 (266)
T ss_dssp CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC------------------------------------
T ss_pred CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc------------------------------------
Confidence 1356799999999889999999 358999999986 333331
Q ss_pred cccCCeeEEEEcCC-CCEEEEeCCCCceeeEEEEcCCCc-EEEeecCccCCCCCcCCCCCcccccCccCcccccceecCC
Q psy4832 425 MDLGSLTALAFSPT-GDLYIADIDARKVNALRVIDSTGR-MFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTS 502 (770)
Q Consensus 425 ~~l~~P~giavd~~-G~lyVaD~~~~ri~~i~~i~~~G~-i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~ 502 (770)
..+..|.||++|+. +.|||+|...++ |..++.+|. ...+.-. ...+..
T Consensus 161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~---I~~~~~dG~~~~~~~~~---------------------------~~~~~~ 210 (266)
T d1ijqa1 161 ENIQWPNGITLDLLSGRLYWVDSKLHS---ISSIDVNGGNRKTILED---------------------------EKRLAH 210 (266)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTE---EEEEETTSCSCEEEEEC---------------------------TTTTSS
T ss_pred cccceeeEEEeeccccEEEEecCCcCE---EEEEECCCCCEEEEEeC---------------------------CCcccc
Confidence 12466999999985 569999999875 677777774 2222211 112567
Q ss_pred eeEEEEcCCCcEEEEcCCCceEEeeecCC
Q psy4832 503 ISALSVSPDGVVNVADQGSLHILALQHYL 531 (770)
Q Consensus 503 P~giav~~dG~lyvaD~~~~~I~~i~~~~ 531 (770)
|.+|+++ ++.||++|..+++|.++.+..
T Consensus 211 p~~lav~-~~~ly~td~~~~~I~~~~~~~ 238 (266)
T d1ijqa1 211 PFSLAVF-EDKVFWTDIINEAIFSANRLT 238 (266)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred cEEEEEE-CCEEEEEECCCCeEEEEECCC
Confidence 9999999 579999999999999997543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.79 E-value=1.1e-17 Score=170.99 Aligned_cols=195 Identities=17% Similarity=0.208 Sum_probs=144.4
Q ss_pred CceEEEEcC-CCCEEEEeC--ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 181 TPVALTSGP-DGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 181 ~P~~la~~~-dG~lyv~d~--~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
.+.+|++|. ++.||++|. +.|++++.+|...+.+- ...+..|.+||+|...++||++|...++|.+++
T Consensus 37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~--~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~------- 107 (263)
T d1npea_ 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII--RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK------- 107 (263)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE--CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEE-------
T ss_pred cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEE--EeccccccEEEEeccCCeEEEeccCCCEEEEEe-------
Confidence 467899997 677999997 58999998876444332 345778999999988999999999999999994
Q ss_pred CCCcE-EEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC----eEEECCCCcE-EEeecCCC
Q psy4832 258 PSINW-EVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN----IRVVSPEGII-HTLIGHHK 330 (770)
Q Consensus 258 ~~g~~-~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~----Ir~id~~G~i-~t~~g~~~ 330 (770)
++|.. .+++.. .+..|.+|++|+ .|.||+++.+. |.+.+.+|.- ..+..
T Consensus 108 ~dg~~~~~l~~~---------------------~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~--- 163 (263)
T d1npea_ 108 MDGTQRRVLFDT---------------------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ--- 163 (263)
T ss_dssp TTSCSCEEEECS---------------------SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC---
T ss_pred cCCceEEEEecc---------------------cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee---
Confidence 44432 233321 145799999998 77899998763 8888888743 22221
Q ss_pred CCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcE-EEEecCCCCCCCCCCCCccccccc
Q psy4832 331 HHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKV-KIVAGIPLHCRTGDKDKRDFKDKQ 407 (770)
Q Consensus 331 ~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v-~~vaG~~~~~~~~~~~~~~~~~~~ 407 (770)
..+.+|.+|++|+.++.||++| .++|.+++.+|.- ++++-
T Consensus 164 ------------------~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~------------------- 206 (263)
T d1npea_ 164 ------------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE------------------- 206 (263)
T ss_dssp ------------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-------------------
T ss_pred ------------------ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC-------------------
Confidence 1366899999998778899999 5899999998863 33331
Q ss_pred cccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCcEEEee
Q psy4832 408 SKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGRMFDFA 467 (770)
Q Consensus 408 ~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~i~~~a 467 (770)
.+..|.+|+++ ++.|||+|+.+++ |.+++. .|+...+.
T Consensus 207 ------------------~~~~P~~lav~-~~~lYwtd~~~~~---I~~~~~~~g~~~~~~ 245 (263)
T d1npea_ 207 ------------------GLQYPFAVTSY-GKNLYYTDWKTNS---VIAMDLAISKEMDTF 245 (263)
T ss_dssp ------------------CCCSEEEEEEE-TTEEEEEETTTTE---EEEEETTTTEEEEEE
T ss_pred ------------------CCCCcEEEEEE-CCEEEEEECCCCE---EEEEECCCCccceEE
Confidence 13469999998 6789999999886 455564 46654444
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.77 E-value=2.8e-17 Score=168.01 Aligned_cols=220 Identities=19% Similarity=0.208 Sum_probs=158.7
Q ss_pred EEEEeCceEEEEcCCCcEEEEecc---CcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCc-EEEEECC
Q psy4832 193 LYVGDFNLVRRLTPEGNVFTVLQL---SATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSIN-WEVAVGS 268 (770)
Q Consensus 193 lyv~d~~~I~~i~~~G~v~~~~~~---~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~-~~~vaG~ 268 (770)
|+++..+.|+++..++........ .......+.+|++|+.++.||++|...++|+++.. +|. .+++...
T Consensus 4 Ll~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l-------~g~~~~~v~~~ 76 (263)
T d1npea_ 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASL-------HGGEPTTIIRQ 76 (263)
T ss_dssp EEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEES-------SSCCCEEEECT
T ss_pred EEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEc-------ccCCcEEEEEe
Confidence 778888899999887753221000 01123346789999999999999999999999953 322 3333321
Q ss_pred CccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC--eEEECCCCcEE-EeecCCCCCCCcCCCccCCCc
Q psy4832 269 GERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVSPEGIIH-TLIGHHKHHNIWSPFNCHRSF 344 (770)
Q Consensus 269 g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id~~G~i~-t~~g~~~~~~~~~p~~~~~~~ 344 (770)
.+..|.+||+|. .++||++|... |.+++.+|... +++..
T Consensus 77 ---------------------~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~---------------- 119 (263)
T d1npea_ 77 ---------------------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT---------------- 119 (263)
T ss_dssp ---------------------TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----------------
T ss_pred ---------------------ccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecc----------------
Confidence 144799999996 77899999765 99999887533 33321
Q ss_pred ccccccccCcceEEEeCCCCeEEEEeC----CEEEEEcCCCcEE-EEecCCCCCCCCCCCCccccccccccccccccCCc
Q psy4832 345 PASTAQLQWPTGLALSPLDDSLHFIDD----RVIFKLTNDLKVK-IVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDS 419 (770)
Q Consensus 345 ~~~~~~l~~P~gla~d~~~g~lyv~D~----~~I~~i~~~G~v~-~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (770)
.+..|.+|++||..|.||+++. .+|++.+.+|.-. .+..
T Consensus 120 -----~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~------------------------------- 163 (263)
T d1npea_ 120 -----GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ------------------------------- 163 (263)
T ss_dssp -----SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC-------------------------------
T ss_pred -----cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee-------------------------------
Confidence 2567999999998999999983 4699999887532 2221
Q ss_pred ccccccccCCeeEEEEcCC-CCEEEEeCCCCceeeEEEEcCCCcEEE-eecCccCCCCCcCCCCCcccccCccCcccccc
Q psy4832 420 VRASNMDLGSLTALAFSPT-GDLYIADIDARKVNALRVIDSTGRMFD-FAGRWQSDKKNCNTTNCAEFEKNSKETLLTST 497 (770)
Q Consensus 420 ~~a~~~~l~~P~giavd~~-G~lyVaD~~~~ri~~i~~i~~~G~i~~-~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 497 (770)
..+..|.|||+|+. +.|||+|...++ |..++.+|.-.. ++
T Consensus 164 -----~~~~~P~glaiD~~~~~lYw~d~~~~~---I~~~~~~g~~~~~v~------------------------------ 205 (263)
T d1npea_ 164 -----DNLGLPNGLTFDAFSSQLCWVDAGTHR---AECLNPAQPGRRKVL------------------------------ 205 (263)
T ss_dssp -----TTCSCEEEEEEETTTTEEEEEETTTTE---EEEEETTEEEEEEEE------------------------------
T ss_pred -----ecccccceEEEeecCcEEEEEeCCCCE---EEEEECCCCCeEEEE------------------------------
Confidence 12467999999975 569999998875 677788875332 32
Q ss_pred eecCCeeEEEEcCCCcEEEEcCCCceEEeeecCC
Q psy4832 498 ARFTSISALSVSPDGVVNVADQGSLHILALQHYL 531 (770)
Q Consensus 498 ~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~~ 531 (770)
..+..|.+|+++ ++.||++|.++++|.++.+..
T Consensus 206 ~~~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~ 238 (263)
T d1npea_ 206 EGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAI 238 (263)
T ss_dssp ECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred CCCCCcEEEEEE-CCEEEEEECCCCEEEEEECCC
Confidence 114569999998 679999999999999997753
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.4e-16 Score=163.21 Aligned_cols=193 Identities=18% Similarity=0.220 Sum_probs=141.5
Q ss_pred cccCceEEEEcC-CCCEEEEeC--ceEEEEcCCCcE-----EEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEE
Q psy4832 178 RLLTPVALTSGP-DGSLYVGDF--NLVRRLTPEGNV-----FTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRV 249 (770)
Q Consensus 178 ~l~~P~~la~~~-dG~lyv~d~--~~I~~i~~~G~v-----~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i 249 (770)
.+..|.+|++|+ .+.||++|. +.|++.+.+|.- .+++ ...+..|.+||+|+..++||++|...++|.++
T Consensus 28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~---~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~ 104 (266)
T d1ijqa1 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 104 (266)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE---CSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEE---eCCCCCcceEEEeeccceEEEEecCCCEEEeE
Confidence 456789999998 567999997 489998877532 2233 45678899999999999999999999999998
Q ss_pred eccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC---eEEECCCCc-EEE
Q psy4832 250 LSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN---IRVVSPEGI-IHT 324 (770)
Q Consensus 250 ~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~---Ir~id~~G~-i~t 324 (770)
+ .+|....... ...+..|.+|++|+ .|.||++|.+. |.+.+.+|. ...
T Consensus 105 ~-------~~g~~~~~~~--------------------~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~ 157 (266)
T d1ijqa1 105 D-------TKGVKRKTLF--------------------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 157 (266)
T ss_dssp E-------TTSSSEEEEE--------------------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred e-------cCCceEEEEE--------------------cCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceec
Confidence 4 4554322221 11245799999998 78899999765 999999885 333
Q ss_pred eecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCc-EEEEecCCCCCCCCCCCCc
Q psy4832 325 LIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLK-VKIVAGIPLHCRTGDKDKR 401 (770)
Q Consensus 325 ~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~-v~~vaG~~~~~~~~~~~~~ 401 (770)
++.. .+.+|.+|++|+.++.||++| .++|.+++.+|. ...+.-.
T Consensus 158 l~~~---------------------~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~------------ 204 (266)
T d1ijqa1 158 LVTE---------------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED------------ 204 (266)
T ss_dssp EECS---------------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC------------
T ss_pred cccc---------------------ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeC------------
Confidence 4422 366899999998678899999 479999999885 2333211
Q ss_pred cccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEE
Q psy4832 402 DFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRV 456 (770)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~ 456 (770)
...+..|.+|+++ ++.|||+|..+++|.++.+
T Consensus 205 ----------------------~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~ 236 (266)
T d1ijqa1 205 ----------------------EKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 236 (266)
T ss_dssp ----------------------TTTTSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred ----------------------CCcccccEEEEEE-CCEEEEEECCCCeEEEEEC
Confidence 1124579999998 5789999999987555443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.75 E-value=4.2e-17 Score=172.01 Aligned_cols=198 Identities=15% Similarity=0.259 Sum_probs=139.1
Q ss_pred eeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCc--EEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc
Q psy4832 224 QYYLALSPADGHLYISDAEKHQILRVLSLESVADPSIN--WEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA 301 (770)
Q Consensus 224 p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~--~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~ 301 (770)
..|+++|+ +|+|||+|..+++|+|+ ++++. ...++.. ...|.||++++
T Consensus 42 lEG~~~D~-~G~Ly~~D~~~g~I~ri-------~p~g~~~~~~~~~~----------------------~~~p~gla~~~ 91 (319)
T d2dg1a1 42 LEGLNFDR-QGQLFLLDVFEGNIFKI-------NPETKEIKRPFVSH----------------------KANPAAIKIHK 91 (319)
T ss_dssp EEEEEECT-TSCEEEEETTTCEEEEE-------CTTTCCEEEEEECS----------------------SSSEEEEEECT
T ss_pred cEeCEECC-CCCEEEEECCCCEEEEE-------ECCCCeEEEEEeCC----------------------CCCeeEEEECC
Confidence 47999996 78999999999999999 56654 2233321 12589999999
Q ss_pred CCcEEEEeCCC------eEEECCCC-cEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC---
Q psy4832 302 DKTMFIADGTN------IRVVSPEG-IIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD--- 371 (770)
Q Consensus 302 ~G~lYvaD~~~------Ir~id~~G-~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~--- 371 (770)
+|+|||++... |..++.++ .+..+.... .....|.++++++ +|+|||+|.
T Consensus 92 dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------------------~~~~~~nd~~~d~-~G~l~vtd~~~~ 151 (319)
T d2dg1a1 92 DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL-------------------STAYCIDDMVFDS-KGGFYFTDFRGY 151 (319)
T ss_dssp TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS-------------------SSCCCEEEEEECT-TSCEEEEECCCB
T ss_pred CCCEEEEecCCCccceeEEEEcCCCceeeeeccCC-------------------CcccCCcceeEEe-ccceeecccccc
Confidence 99999997532 67777664 444444221 1245689999999 999999982
Q ss_pred -----CEEEEEcCCCc-EEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEE
Q psy4832 372 -----RVIFKLTNDLK-VKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIA 444 (770)
Q Consensus 372 -----~~I~~i~~~G~-v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVa 444 (770)
+.+++++++|. ++.+.. .+..|+||+++++|+ |||+
T Consensus 152 ~~~~~g~v~~~~~dg~~~~~~~~-------------------------------------~~~~pnGia~s~dg~~lyva 194 (319)
T d2dg1a1 152 STNPLGGVYYVSPDFRTVTPIIQ-------------------------------------NISVANGIALSTDEKVLWVT 194 (319)
T ss_dssp TTBCCEEEEEECTTSCCEEEEEE-------------------------------------EESSEEEEEECTTSSEEEEE
T ss_pred cccCcceeEEEecccceeEEEee-------------------------------------ccceeeeeeeccccceEEEe
Confidence 46899998874 444431 245699999999987 9999
Q ss_pred eCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceE
Q psy4832 445 DIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHI 524 (770)
Q Consensus 445 D~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I 524 (770)
|+.+++|.++ .++.+|......+.. .......+..|.||++|++|+|||++.++++|
T Consensus 195 d~~~~~I~~~-d~~~~g~~~~~~~~~----------------------~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V 251 (319)
T d2dg1a1 195 ETTANRLHRI-ALEDDGVTIQPFGAT----------------------IPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRV 251 (319)
T ss_dssp EGGGTEEEEE-EECTTSSSEEEEEEE----------------------EEEECCSSSEEEEEEEBTTCCEEEEEETTTEE
T ss_pred cccCCceEEE-EEcCCCceeccccce----------------------eeeccCCccceeeeeEcCCCCEEEEEcCCCEE
Confidence 9998875443 234455432221111 00111223459999999999999999999999
Q ss_pred EeeecCC
Q psy4832 525 LALQHYL 531 (770)
Q Consensus 525 ~~i~~~~ 531 (770)
+++++..
T Consensus 252 ~~~~p~G 258 (319)
T d2dg1a1 252 LVFNKRG 258 (319)
T ss_dssp EEECTTS
T ss_pred EEECCCC
Confidence 8887643
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.65 E-value=4.9e-15 Score=154.50 Aligned_cols=235 Identities=13% Similarity=0.140 Sum_probs=163.2
Q ss_pred cCCCeEEECCCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCCEEEEeC--ceEEEE---
Q psy4832 130 FHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDF--NLVRRL--- 204 (770)
Q Consensus 130 ~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~--~~I~~i--- 204 (770)
++++++...||+ +|+++...++|..+..+|....+. ..-..|.+|++++||+|||++. +.+.++
T Consensus 29 ~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~~~----------~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~ 97 (302)
T d2p4oa1 29 FLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQIHA----------TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV 97 (302)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEEEE----------ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred CcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEEEE----------cCCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence 366899999995 888887888999998887754321 1124689999999999999986 344444
Q ss_pred cCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCc
Q psy4832 205 TPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNG 284 (770)
Q Consensus 205 ~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g 284 (770)
..++....+... .....|+++++++ +|++|+++..+.+|++++. ..+...++...+.. ..
T Consensus 98 ~~~~~~~~~~~~--~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~------~~~~~~~~~~~~~~-----------~~ 157 (302)
T d2p4oa1 98 KSDGTVETLLTL--PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDV------VQPSGSIWLEHPML-----------AR 157 (302)
T ss_dssp CTTSCEEEEEEC--TTCSCEEEEEESS-SSEEEEEETTTTEEEEEET------TTTEEEEEEECGGG-----------SC
T ss_pred ccccceeecccc--CCccccceeEEcc-CCCEEeeccccccceeeec------cCCcceeEecCCcc-----------ce
Confidence 356777776653 3456799999996 8999999999999999952 22334433322111 00
Q ss_pred ccccccccCcceEEEccCCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCC
Q psy4832 285 PALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPL 362 (770)
Q Consensus 285 ~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~ 362 (770)
......+..|.+|+.+ .+.+|++++.+ |++++.++.-.. ... ........|.+|++|+
T Consensus 158 ~~~~~~~~~~ngi~~~-~~~l~~~~~~~~~i~~~~~~~~~~~--~~~----------------~~~~~~~~pdgia~d~- 217 (302)
T d2p4oa1 158 SNSESVFPAANGLKRF-GNFLYVSNTEKMLLLRIPVDSTDKP--GEP----------------EIFVEQTNIDDFAFDV- 217 (302)
T ss_dssp SSTTCCSCSEEEEEEE-TTEEEEEETTTTEEEEEEBCTTSCB--CCC----------------EEEEESCCCSSEEEBT-
T ss_pred eeccCccccccccccc-CCceeeecCCCCeEEeccccccccc--ccc----------------ccccCCCCCcceEECC-
Confidence 0112335578899987 46799999877 888875431110 000 0011244699999999
Q ss_pred CCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEc---C
Q psy4832 363 DDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFS---P 437 (770)
Q Consensus 363 ~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd---~ 437 (770)
+|+|||++ +++|++|+++|++..++... ..+..|.+++|+ +
T Consensus 218 dG~l~va~~~~~~V~~i~p~G~~~~~~~~~----------------------------------~~~~~pt~vafg~~~~ 263 (302)
T d2p4oa1 218 EGNLYGATHIYNSVVRIAPDRSTTIIAQAE----------------------------------QGVIGSTAVAFGQTEG 263 (302)
T ss_dssp TCCEEEECBTTCCEEEECTTCCEEEEECGG----------------------------------GTCTTEEEEEECCSTT
T ss_pred CCCEEEEEcCCCcEEEECCCCCEEEEEecC----------------------------------CCCCCceEEEEcCCCC
Confidence 99999998 68999999999988777421 124569999995 4
Q ss_pred CCC-EEEEeCCCC
Q psy4832 438 TGD-LYIADIDAR 449 (770)
Q Consensus 438 ~G~-lyVaD~~~~ 449 (770)
|++ |||+...+.
T Consensus 264 D~~~Lyvtt~~g~ 276 (302)
T d2p4oa1 264 DCTAIYVVTNGGM 276 (302)
T ss_dssp TTTEEEEEECTTS
T ss_pred CCCEEEEECCCCc
Confidence 544 999987654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.55 E-value=5.9e-13 Score=138.00 Aligned_cols=225 Identities=15% Similarity=0.128 Sum_probs=151.9
Q ss_pred eEEEEcC-CCCEEEEeC--ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCC
Q psy4832 183 VALTSGP-DGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPS 259 (770)
Q Consensus 183 ~~la~~~-dG~lyv~d~--~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~ 259 (770)
.+...|+ +|+||++|. ++|.|+++++...+++..+ ..|.++++.+ +|.|+++.. +.|.+++. .+
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~----~~~~~i~~~~-dg~l~va~~--~gl~~~d~------~t 87 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALP----FMGSALAKIS-DSKQLIASD--DGLFLRDT------AT 87 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECS----SCEEEEEEEE-TTEEEEEET--TEEEEEET------TT
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECC----CCcEEEEEec-CCCEEEEEe--CccEEeec------cc
Confidence 4556776 889999997 5999999887766666432 3578899985 899999875 57888852 34
Q ss_pred CcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--------eEEECCCCcEEEeecCCCC
Q psy4832 260 INWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--------IRVVSPEGIIHTLIGHHKH 331 (770)
Q Consensus 260 g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--------Ir~id~~G~i~t~~g~~~~ 331 (770)
+.++.++.... ....+.|+.+++|++|+|||++..+ ++++. +|.+..+.
T Consensus 88 g~~~~l~~~~~-----------------~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~-~g~~~~~~----- 144 (295)
T d2ghsa1 88 GVLTLHAELES-----------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLF----- 144 (295)
T ss_dssp CCEEEEECSST-----------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEE-----
T ss_pred ceeeEEeeeec-----------------CCCcccceeeEECCCCCEEEEeccccccccceeEeeec-CCcEEEEe-----
Confidence 77777663211 1224578999999999999997432 44443 45555444
Q ss_pred CCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccc
Q psy4832 332 HNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSK 409 (770)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~ 409 (770)
..+..|+|+++++.+..||++| .++|++++.+.......+.....
T Consensus 145 -----------------~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~---------------- 191 (295)
T d2ghsa1 145 -----------------ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVF---------------- 191 (295)
T ss_dssp -----------------EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEE----------------
T ss_pred -----------------eccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEE----------------
Confidence 1366799999999444699999 48899987553211111110000
Q ss_pred cccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCc
Q psy4832 410 TKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNS 489 (770)
Q Consensus 410 ~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~ 489 (770)
.........|.|+++|++|+||||.+.+++ |.+++++|++....--+
T Consensus 192 -----------~~~~~~~g~pdG~~vD~~GnlWva~~~~g~---V~~~dp~G~~~~~i~lP------------------- 238 (295)
T d2ghsa1 192 -----------IDSTGIKGGMDGSVCDAEGHIWNARWGEGA---VDRYDTDGNHIARYEVP------------------- 238 (295)
T ss_dssp -----------EECTTSSSEEEEEEECTTSCEEEEEETTTE---EEEECTTCCEEEEEECS-------------------
T ss_pred -----------eccCcccccccceEEcCCCCEEeeeeCCCc---eEEecCCCcEeeEecCC-------------------
Confidence 000111245999999999999999998875 78899999876554222
Q ss_pred cCcccccceecCCeeEEEEc-CCC-cEEEEcC
Q psy4832 490 KETLLTSTARFTSISALSVS-PDG-VVNVADQ 519 (770)
Q Consensus 490 ~d~~~~~~~~l~~P~giav~-~dG-~lyvaD~ 519 (770)
-..|+++|+. +|+ +|||+..
T Consensus 239 ----------~~~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 239 ----------GKQTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp ----------CSBEEEEEEESTTSCEEEEEEB
T ss_pred ----------CCceEEEEEeCCCCCEEEEEEC
Confidence 1248888885 453 7898754
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.44 E-value=4.3e-12 Score=131.37 Aligned_cols=198 Identities=15% Similarity=0.135 Sum_probs=135.0
Q ss_pred eEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCC-cEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCC
Q psy4832 225 YYLALSPADGHLYISDAEKHQILRVLSLESVADPSI-NWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADK 303 (770)
Q Consensus 225 ~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g-~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G 303 (770)
.|...++.++.||++|..+++|++++ +.+ ..+++. .+ ..|.+|+.+++|
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d-------~~~g~~~~~~-~~----------------------~~~~~i~~~~dg 70 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELH-------LASGRKTVHA-LP----------------------FMGSALAKISDS 70 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEE-------TTTTEEEEEE-CS----------------------SCEEEEEEEETT
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEE-------CCCCeEEEEE-CC----------------------CCcEEEEEecCC
Confidence 57788988999999999999999994 443 333322 11 136789999999
Q ss_pred cEEEEeCCCeEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC--------CEE
Q psy4832 304 TMFIADGTNIRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD--------RVI 374 (770)
Q Consensus 304 ~lYvaD~~~Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~--------~~I 374 (770)
.|+++....|.++|++ |+++.++.... ......|+++++|+ +|+|||++. ..+
T Consensus 71 ~l~va~~~gl~~~d~~tg~~~~l~~~~~-----------------~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l 132 (295)
T d2ghsa1 71 KQLIASDDGLFLRDTATGVLTLHAELES-----------------DLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSI 132 (295)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEECSST-----------------TCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEE
T ss_pred CEEEEEeCccEEeecccceeeEEeeeec-----------------CCCcccceeeEECC-CCCEEEEeccccccccceeE
Confidence 9999986669999865 78777653211 11355789999999 999999971 346
Q ss_pred EEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceee
Q psy4832 375 FKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNA 453 (770)
Q Consensus 375 ~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~ 453 (770)
+++. +|+++.+.. .+..|+|+++++++. ||++|+.+++|
T Consensus 133 ~~~~-~g~~~~~~~-------------------------------------~~~~~Ng~~~s~d~~~l~~~dt~~~~I-- 172 (295)
T d2ghsa1 133 YHVA-KGKVTKLFA-------------------------------------DISIPNSICFSPDGTTGYFVDTKVNRL-- 172 (295)
T ss_dssp EEEE-TTEEEEEEE-------------------------------------EESSEEEEEECTTSCEEEEEETTTCEE--
T ss_pred eeec-CCcEEEEee-------------------------------------ccCCcceeeecCCCceEEEeeccccee--
Confidence 6654 455554441 245699999999887 99999998864
Q ss_pred EEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeecCC
Q psy4832 454 LRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYL 531 (770)
Q Consensus 454 i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~~ 531 (770)
.+++.+.......+... .+ .........|.|+++|++|+||||..+.++|.++++..
T Consensus 173 -~~~~~d~~~~~~~~~~~------------~~--------~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G 229 (295)
T d2ghsa1 173 -MRVPLDARTGLPTGKAE------------VF--------IDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG 229 (295)
T ss_dssp -EEEEBCTTTCCBSSCCE------------EE--------EECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred -eEeeecccccccccceE------------EE--------eccCcccccccceEEcCCCCEEeeeeCCCceEEecCCC
Confidence 44443322111111100 00 00001123599999999999999998888888887654
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=99.28 E-value=2.9e-10 Score=124.19 Aligned_cols=64 Identities=30% Similarity=0.462 Sum_probs=47.4
Q ss_pred ccccCceEEEEcCCCCEEEEeC--ceEEEEcC-CCcEEEEeccCc-----ccccceeEEEEeCC---CCcEEEEe
Q psy4832 177 ARLLTPVALTSGPDGSLYVGDF--NLVRRLTP-EGNVFTVLQLSA-----TQVSYQYYLALSPA---DGHLYISD 240 (770)
Q Consensus 177 ~~l~~P~~la~~~dG~lyv~d~--~~I~~i~~-~G~v~~~~~~~~-----~~~~~p~~lav~p~---~g~lyvsd 240 (770)
..|..|++|++.|||+|||++. ++|++++. +|....+.+... ..-..-.+||++|. ++.||++-
T Consensus 24 ~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsy 98 (450)
T d1crua_ 24 SNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (450)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEE
Confidence 3588999999999999999995 69999985 566666665421 11233468999973 57899974
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.21 E-value=2.6e-08 Score=100.54 Aligned_cols=255 Identities=18% Similarity=0.256 Sum_probs=155.2
Q ss_pred cEEecccCCCeEEEEec-cCccC-CccCCCCCcccccccccCceEEEEcCCCC-EEEEeC--ceEEEEcCC-CcEEEEec
Q psy4832 142 SLHLKHEFPRTVSVVMG-TGLQR-PLVCKDCDGVARDARLLTPVALTSGPDGS-LYVGDF--NLVRRLTPE-GNVFTVLQ 215 (770)
Q Consensus 142 ~~~~~~~~~~~i~~v~g-~G~~~-~~~~~~~~g~~~~~~l~~P~~la~~~dG~-lyv~d~--~~I~~i~~~-G~v~~~~~ 215 (770)
.+||+....+.|.++.. +++.. .+. . =..|.+|+++|||. |||++. +.|+.++.. ++....+.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~---~--------g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~ 71 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTATIP---V--------GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP 71 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE---C--------SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEE---C--------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee
Confidence 46776656667777763 22211 010 0 03699999999997 788876 589999864 66555543
Q ss_pred cCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcc
Q psy4832 216 LSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPK 295 (770)
Q Consensus 216 ~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~ 295 (770)
....|.++++++.+..++++......+..++. .++........ ...|.
T Consensus 72 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~----------------------~~~~~ 119 (301)
T d1l0qa2 72 ----AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDT------TSNTVAGTVKT----------------------GKSPL 119 (301)
T ss_dssp ----CSSSEEEEEECTTSSEEEEEETTTTEEEEEET------TTTEEEEEEEC----------------------SSSEE
T ss_pred ----ccccccccccccccccccccccccceeeeccc------ccceeeeeccc----------------------cccce
Confidence 23468999999866678888888888877742 22322222211 12477
Q ss_pred eEEEccCCc-EEEEeCCC--eEEECC-CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC
Q psy4832 296 GLAIKADKT-MFIADGTN--IRVVSP-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD 371 (770)
Q Consensus 296 gIavd~~G~-lYvaD~~~--Ir~id~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~ 371 (770)
.++++++|. ++++.... ++..+. .+....... ....|..+++++....+|++..
T Consensus 120 ~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 177 (301)
T d1l0qa2 120 GLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS----------------------VGRSPKGIAVTPDGTKVYVANF 177 (301)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----------------------CCSSEEEEEECTTSSEEEEEET
T ss_pred EEEeecCCCeeeeeeccccceeeeeccccceeeecc----------------------cCCCceEEEeeccccceeeecc
Confidence 899999887 55555433 555543 333222221 1235788999984456888873
Q ss_pred --CEEEEEcCCC-cEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCC
Q psy4832 372 --RVIFKLTNDL-KVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADID 447 (770)
Q Consensus 372 --~~I~~i~~~G-~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~ 447 (770)
..+....... .+..... ....|.+++++++|. +|++..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~g~~~~v~~~~ 220 (301)
T d1l0qa2 178 DSMSISVIDTVTNSVIDTVK-------------------------------------VEAAPSGIAVNPEGTKAYVTNVD 220 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEE-------------------------------------CSSEEEEEEECTTSSEEEEEEEC
T ss_pred cccccccccccceeeeeccc-------------------------------------ccCCcceeecccccccccccccc
Confidence 4444444332 2221110 113489999999887 7777654
Q ss_pred CCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCc-EEEEcCCCceEE
Q psy4832 448 ARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGV-VNVADQGSLHIL 525 (770)
Q Consensus 448 ~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~-lyvaD~~~~~I~ 525 (770)
.. .+.|+.+|. ++++...... -..|.+|+++|||. |||+...+++|.
T Consensus 221 ~~-~~~v~v~D~~t~~~~~~~~~------------------------------~~~~~~va~spdg~~l~va~~~~~~i~ 269 (301)
T d1l0qa2 221 KY-FNTVSMIDTGTNKITARIPV------------------------------GPDPAGIAVTPDGKKVYVALSFCNTVS 269 (301)
T ss_dssp SS-CCEEEEEETTTTEEEEEEEC------------------------------CSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred ce-eeeeeeeecCCCeEEEEEcC------------------------------CCCEEEEEEeCCCCEEEEEECCCCeEE
Confidence 32 245777774 4554322110 13489999999996 789998887776
Q ss_pred eeec
Q psy4832 526 ALQH 529 (770)
Q Consensus 526 ~i~~ 529 (770)
.++.
T Consensus 270 v~D~ 273 (301)
T d1l0qa2 270 VIDT 273 (301)
T ss_dssp EEET
T ss_pred EEEC
Confidence 6543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1e-08 Score=105.50 Aligned_cols=249 Identities=15% Similarity=0.165 Sum_probs=142.1
Q ss_pred cCceEEEEcCCCC-EEEEeC--ceEEE--EcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCC
Q psy4832 180 LTPVALTSGPDGS-LYVGDF--NLVRR--LTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLES 254 (770)
Q Consensus 180 ~~P~~la~~~dG~-lyv~d~--~~I~~--i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~ 254 (770)
..|.+|++.|||. ||++.. +.|+. ++.++...+.... ......|.+|+++|.+..||+++.....|..+...
T Consensus 37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~-~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~-- 113 (333)
T d1ri6a_ 37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE-SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE-- 113 (333)
T ss_dssp SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE-EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE--
T ss_pred CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeee-cccCCCceEEEEcCCCCEEeecccCCCceeeeccc--
Confidence 3578999999997 788876 45554 5555444433321 12335689999999666799999888887766421
Q ss_pred ccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEEC--CCCcEEEeecCC
Q psy4832 255 VADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVS--PEGIIHTLIGHH 329 (770)
Q Consensus 255 ~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id--~~G~i~t~~g~~ 329 (770)
.......... ......|.+++++++++ +++++... |+.++ ..+.........
T Consensus 114 ----~~~~~~~~~~-------------------~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (333)
T d1ri6a_ 114 ----DGLPVGVVDV-------------------VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE 170 (333)
T ss_dssp ----TTEEEEEEEE-------------------ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred ----cccceecccc-------------------cCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee
Confidence 1111111110 01123588999999887 66666544 55544 333332211110
Q ss_pred CCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCE--EEEEcCCC-cEEEEecCCCCCCCCCCCCcccc
Q psy4832 330 KHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRV--IFKLTNDL-KVKIVAGIPLHCRTGDKDKRDFK 404 (770)
Q Consensus 330 ~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~--I~~i~~~G-~v~~vaG~~~~~~~~~~~~~~~~ 404 (770)
........|..+++++....+|++. .+. +..+.... .+....-.....
T Consensus 171 ----------------~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----------- 223 (333)
T d1ri6a_ 171 ----------------VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP----------- 223 (333)
T ss_dssp ----------------EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSC-----------
T ss_pred ----------------eeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeee-----------
Confidence 0011234688999999444566766 233 44433322 211111000000
Q ss_pred ccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCc
Q psy4832 405 DKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCA 483 (770)
Q Consensus 405 ~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~ 483 (770)
........|.+++++++|. +|++....+.+ ++..++.++....+.+...
T Consensus 224 -----------------~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------ 273 (333)
T d1ri6a_ 224 -----------------ENFSDTRWAADIHITPDGRHLYACDRTASLI-TVFSVSEDGSVLSKEGFQP------------ 273 (333)
T ss_dssp -----------------TTCCSCCCEEEEEECTTSSEEEEEETTTTEE-EEEEECTTSCCEEEEEEEE------------
T ss_pred -----------------cCCCccccceeEEEecccCceeeecccCCeE-EEEEEcCCCCEEEEEEEeC------------
Confidence 0112235688999999987 77777766543 4556666666545443220
Q ss_pred ccccCccCcccccceecCCeeEEEEcCCCc-EEEEcCCCceEEe
Q psy4832 484 EFEKNSKETLLTSTARFTSISALSVSPDGV-VNVADQGSLHILA 526 (770)
Q Consensus 484 ~~~~~~~d~~~~~~~~l~~P~giav~~dG~-lyvaD~~~~~I~~ 526 (770)
.-..|.+|+++|||+ ||++....+.|..
T Consensus 274 ---------------~~~~p~~~a~spDGk~l~va~~~~~~v~v 302 (333)
T d1ri6a_ 274 ---------------TETQPRGFNVDHSGKYLIAAGQKSHHISV 302 (333)
T ss_dssp ---------------CSSSCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred ---------------CCCCeeEEEEeCCCCEEEEEECCCCeEEE
Confidence 113588999999997 7999877666554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.04 E-value=1.5e-08 Score=107.53 Aligned_cols=270 Identities=11% Similarity=0.031 Sum_probs=148.3
Q ss_pred CceEEEEcCCCC-EEEEeCc--eEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeC--CCcEEEEEeccCCc
Q psy4832 181 TPVALTSGPDGS-LYVGDFN--LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDA--EKHQILRVLSLESV 255 (770)
Q Consensus 181 ~P~~la~~~dG~-lyv~d~~--~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~--~~~~I~~i~~~~~~ 255 (770)
.|..|+++++|. ||++..+ ....+++++......... .-..|..+++++.+..+|++.. .+..|..+..
T Consensus 41 ~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~---- 114 (365)
T d1jofa_ 41 PISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHP--IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPF---- 114 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEE--CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE----
T ss_pred CCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeec--CCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEc----
Confidence 356799999886 7888775 455667777766554321 1246889999986666777654 4556655432
Q ss_pred cCCCCcEEEEE---CCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEE--ECCCCcEEEeec
Q psy4832 256 ADPSINWEVAV---GSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRV--VSPEGIIHTLIG 327 (770)
Q Consensus 256 ~~~~g~~~~va---G~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~--id~~G~i~t~~g 327 (770)
..++....+. -.+.. .+.........-.+|++++++|+|. ||++|.+. |+. ++.+|.+.....
T Consensus 115 -~~~~~~~~~~~~~~~~~~--------~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~ 185 (365)
T d1jofa_ 115 -YKFAGYGNVFSVSETGKL--------EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS 185 (365)
T ss_dssp -SSSCCEEEEEEECTTCCE--------EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE
T ss_pred -cCCCCcceeEeeeeccee--------cCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccc
Confidence 1222111111 00000 0000000001122589999999997 99999765 554 456676654321
Q ss_pred CCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe--CCEEEEEcCC--Cc--EEEEecCCCCCCCCCCCC
Q psy4832 328 HHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID--DRVIFKLTND--LK--VKIVAGIPLHCRTGDKDK 400 (770)
Q Consensus 328 ~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D--~~~I~~i~~~--G~--v~~vaG~~~~~~~~~~~~ 400 (770)
.... ..=..|.+++++| ++. +|++. .+.|..++.+ .. +..+...+......
T Consensus 186 ~~~~-----------------~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~---- 243 (365)
T d1jofa_ 186 VDAP-----------------DPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI---- 243 (365)
T ss_dssp EECS-----------------STTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC----
T ss_pred eeec-----------------CCCCceEEEEECC-CCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccc----
Confidence 1000 0012599999999 665 88887 5777666633 21 22222111110000
Q ss_pred ccccccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCc-----eeeEEEEcCCCcEEEeecCccCCC
Q psy4832 401 RDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARK-----VNALRVIDSTGRMFDFAGRWQSDK 474 (770)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~r-----i~~i~~i~~~G~i~~~aG~~~~~~ 474 (770)
+ ............|..|+++|+|. ||++...... | .+.+++.+|.+.......
T Consensus 244 ~----------------~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i-~~~~~~~~g~~~~~~~~~---- 302 (365)
T d1jofa_ 244 P----------------DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYI-AGFKLRDCGSIEKQLFLS---- 302 (365)
T ss_dssp C----------------CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEE-EEEEECTTSCEEEEEEEE----
T ss_pred c----------------ccccccccccCCccceEECCCCCEEEEEcccCCCccceEE-EEEEecCCCceeeEeEee----
Confidence 0 00001122345688999999997 8998764332 2 233455666654322111
Q ss_pred CCcCCCCCcccccCccCcccccceecCCeeEEEEcC-CCc-EEEEcCCCceEEeee
Q psy4832 475 KNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSP-DGV-VNVADQGSLHILALQ 528 (770)
Q Consensus 475 ~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~-dG~-lyvaD~~~~~I~~i~ 528 (770)
.....-..|.+|+++| +|. |||+++.++.|..++
T Consensus 303 --------------------~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~ 338 (365)
T d1jofa_ 303 --------------------PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp --------------------ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred --------------------EEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEE
Confidence 0011124689999998 786 899999888776554
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=4e-08 Score=100.90 Aligned_cols=262 Identities=13% Similarity=0.154 Sum_probs=150.1
Q ss_pred ecCCCeEEECCCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCC-EEEEeC--ceEEEEc
Q psy4832 129 NFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGS-LYVGDF--NLVRRLT 205 (770)
Q Consensus 129 ~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~-lyv~d~--~~I~~i~ 205 (770)
..+.+++..+||..+|++...++.|..+.-+....... -......-..|.+|+++|||. ||+++. ..|+.+.
T Consensus 37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~-----~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~ 111 (333)
T d1ri6a_ 37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT-----FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTR 111 (333)
T ss_dssp SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE-----EEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEE-----EeeecccCCCceEEEEcCCCCEEeecccCCCceeeec
Confidence 35788999999999999875677777654221111000 001122235699999999997 888876 3666655
Q ss_pred CCCcE-EEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCc
Q psy4832 206 PEGNV-FTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNG 284 (770)
Q Consensus 206 ~~G~v-~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g 284 (770)
.+... ...... ......|.+++++|.+..+++++.....|..++.. .............
T Consensus 112 ~~~~~~~~~~~~-~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~-------------- 171 (333)
T d1ri6a_ 112 LEDGLPVGVVDV-VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVS-----DDGHLVAQDPAEV-------------- 171 (333)
T ss_dssp EETTEEEEEEEE-ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC-----TTSCEEEEEEEEE--------------
T ss_pred cccccceecccc-cCCCccceEEEeeecceeeeccccccceeeEEEec-----cCCcceeeeceee--------------
Confidence 43332 222211 23445688999999777789999888888777532 2222211110000
Q ss_pred ccccccccCcceEEEccCCc-EEEEeCCC----eEEECCCC-cEEEeecCCCCCCCcCCCccCCCcccccccccCcceEE
Q psy4832 285 PALAAKLSHPKGLAIKADKT-MFIADGTN----IRVVSPEG-IIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLA 358 (770)
Q Consensus 285 ~~~~a~l~~P~gIavd~~G~-lYvaD~~~----Ir~id~~G-~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla 358 (770)
.......|..|++++++. +|++.... +..++... .+....... ..+........|.+++
T Consensus 172 --~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 236 (333)
T d1ri6a_ 172 --TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD-------------MMPENFSDTRWAADIH 236 (333)
T ss_dssp --ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEE-------------CSCTTCCSCCCEEEEE
T ss_pred --eeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeee-------------eeecCCCccccceeEE
Confidence 011234688999998776 55665433 33333322 111110000 0001122355788999
Q ss_pred EeCCCCe-EEEEe--CC--EEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEE
Q psy4832 359 LSPLDDS-LHFID--DR--VIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTAL 433 (770)
Q Consensus 359 ~d~~~g~-lyv~D--~~--~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~gi 433 (770)
+++ +++ +|++. .+ .++.++.++....+.+... .-..|.+|
T Consensus 237 ~s~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~p~~~ 281 (333)
T d1ri6a_ 237 ITP-DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP----------------------------------TETQPRGF 281 (333)
T ss_dssp ECT-TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE----------------------------------CSSSCCCE
T ss_pred Eec-ccCceeeecccCCeEEEEEEcCCCCEEEEEEEeC----------------------------------CCCCeeEE
Confidence 999 665 66665 23 4566666665444443211 11358999
Q ss_pred EEcCCCC-EEEEeCCCCceeeEEEEcC-CCcEEEe
Q psy4832 434 AFSPTGD-LYIADIDARKVNALRVIDS-TGRMFDF 466 (770)
Q Consensus 434 avd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i~~~ 466 (770)
+++|+|+ |||+....+.| +|..+|. +|.+..+
T Consensus 282 a~spDGk~l~va~~~~~~v-~v~~id~~tG~l~~~ 315 (333)
T d1ri6a_ 282 NVDHSGKYLIAAGQKSHHI-SVYEIVGEQGLLHEK 315 (333)
T ss_dssp EECTTSSEEEEECTTTCEE-EEEEEETTTTEEEEE
T ss_pred EEeCCCCEEEEEECCCCeE-EEEEEECCCCcEEEE
Confidence 9999998 89998877765 3555675 6776544
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=98.97 E-value=1.7e-06 Score=86.62 Aligned_cols=165 Identities=19% Similarity=0.333 Sum_probs=104.2
Q ss_pred EEEEeC--ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEE-EEECC
Q psy4832 193 LYVGDF--NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWE-VAVGS 268 (770)
Q Consensus 193 lyv~d~--~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~-~vaG~ 268 (770)
+||++. +.|..+|. +++++..+..+ ..|.+|+++|.+..||+++..+++|..++. .++... .+..
T Consensus 4 ~yV~~~~~~~v~v~D~~t~~~~~~i~~g----~~p~~va~spdG~~l~v~~~~~~~i~v~d~------~t~~~~~~~~~- 72 (301)
T d1l0qa2 4 AYIANSESDNISVIDVTSNKVTATIPVG----SNPMGAVISPDGTKVYVANAHSNDVSIIDT------ATNNVIATVPA- 72 (301)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEEGGGTEEEEEET------TTTEEEEEEEC-
T ss_pred EEEEECCCCEEEEEECCCCeEEEEEECC----CCceEEEEeCCCCEEEEEECCCCEEEEEEC------CCCceeeeeec-
Confidence 688765 58889984 57777666432 469999999855569999999999999953 223222 2211
Q ss_pred CccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEECCC-CcEEEeecCCCCCCCcCCCccCCCc
Q psy4832 269 GERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSF 344 (770)
Q Consensus 269 g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~ 344 (770)
...|.++++++++. ++++.... ++..+.. +.....+..
T Consensus 73 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 114 (301)
T d1l0qa2 73 ----------------------GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT---------------- 114 (301)
T ss_dssp ----------------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----------------
T ss_pred ----------------------cccccccccccccccccccccccceeeecccccceeeeeccc----------------
Confidence 12588999999887 66665544 6666543 444333322
Q ss_pred ccccccccCcceEEEeCCCCe-EEEEe--CCEEEEEcC-CCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcc
Q psy4832 345 PASTAQLQWPTGLALSPLDDS-LHFID--DRVIFKLTN-DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420 (770)
Q Consensus 345 ~~~~~~l~~P~gla~d~~~g~-lyv~D--~~~I~~i~~-~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (770)
...|..++++| ++. ++++. +..+..++. .+......
T Consensus 115 ------~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 154 (301)
T d1l0qa2 115 ------GKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTV--------------------------------- 154 (301)
T ss_dssp ------SSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEE---------------------------------
T ss_pred ------cccceEEEeec-CCCeeeeeeccccceeeeeccccceeeec---------------------------------
Confidence 22477899998 665 55665 344555543 23222111
Q ss_pred cccccccCCeeEEEEcCCCC-EEEEeCCCCc
Q psy4832 421 RASNMDLGSLTALAFSPTGD-LYIADIDARK 450 (770)
Q Consensus 421 ~a~~~~l~~P~giavd~~G~-lyVaD~~~~r 450 (770)
.....|..+++++++. +|++......
T Consensus 155 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (301)
T d1l0qa2 155 ----SVGRSPKGIAVTPDGTKVYVANFDSMS 181 (301)
T ss_dssp ----ECCSSEEEEEECTTSSEEEEEETTTTE
T ss_pred ----ccCCCceEEEeeccccceeeecccccc
Confidence 1124589999999776 8888877653
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.70 E-value=8.2e-07 Score=93.62 Aligned_cols=179 Identities=13% Similarity=0.069 Sum_probs=102.5
Q ss_pred ccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEc
Q psy4832 221 VSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300 (770)
Q Consensus 221 ~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd 300 (770)
-.+|++++++|.+..||++|.+.++|+.++. +.++........-. .. .-..|++|+++
T Consensus 144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~-----~~~g~~~~~~~~~~-------~~----------~g~gPr~i~f~ 201 (365)
T d1jofa_ 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRK-----LASGEVELVGSVDA-------PD----------PGDHPRWVAMH 201 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEE-----CTTSCEEEEEEEEC-------SS----------TTCCEEEEEEC
T ss_pred CCcceEEEECCCCCEEEEeeCCCCEEEEEEc-----cCCCceeeccceee-------cC----------CCCceEEEEEC
Confidence 3478999999966679999999999988853 34555443321000 00 01269999999
Q ss_pred cCCc-EEEEeCCC--eEEECC--CC-c-EEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEeC-
Q psy4832 301 ADKT-MFIADGTN--IRVVSP--EG-I-IHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFIDD- 371 (770)
Q Consensus 301 ~~G~-lYvaD~~~--Ir~id~--~G-~-i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D~- 371 (770)
++|. +|++.... |..++. .. . +... +.... .+..-............+|..|+++| +| .||++..
T Consensus 202 pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~lyvsnr~ 275 (365)
T d1jofa_ 202 PTGNYLYALMEAGNRICEYVIDPATHMPVYTH-HSFPL----IPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRA 275 (365)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTTCCEEEEE-EEEES----SCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEE
T ss_pred CCCceEEEeccCCCEEEEEEecCCCceEEEEe-eeecc----ccccccccccccccccCCccceEECC-CCCEEEEEccc
Confidence 9997 78887543 665543 22 1 2111 11000 00000000111223355788999999 66 5899861
Q ss_pred --------CEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcC-CCC-E
Q psy4832 372 --------RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSP-TGD-L 441 (770)
Q Consensus 372 --------~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~-~G~-l 441 (770)
-.+++++.+|.+......... ...-..|.+|+++| +|. |
T Consensus 276 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~-------------------------------~~~G~~p~~i~~~p~~G~~l 324 (365)
T d1jofa_ 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPT-------------------------------PTSGGHSNAVSPCPWSDEWM 324 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEEC-------------------------------SSCCTTCCCEEECTTCTTEE
T ss_pred CCCccceEEEEEEecCCCceeeEeEeeEE-------------------------------EcCCCCccEEEecCCCCCEE
Confidence 124555566765433211000 01124589999997 787 9
Q ss_pred EEEeCCCCceeeEEEEcC
Q psy4832 442 YIADIDARKVNALRVIDS 459 (770)
Q Consensus 442 yVaD~~~~ri~~i~~i~~ 459 (770)
||++..++.|. |.+++.
T Consensus 325 ~va~~~s~~v~-v~~~~~ 341 (365)
T d1jofa_ 325 AITDDQEGWLE-IYRWKD 341 (365)
T ss_dssp EEECSSSCEEE-EEEEET
T ss_pred EEEeCCCCeEE-EEEEeC
Confidence 99999888764 333443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.67 E-value=6.5e-06 Score=88.97 Aligned_cols=71 Identities=21% Similarity=0.293 Sum_probs=48.8
Q ss_pred ccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEE
Q psy4832 219 TQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLA 298 (770)
Q Consensus 219 ~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIa 298 (770)
.++..|.+|++.| +|+|||++...++|++++ ..++....+.+...... ...|.+ ...|||
T Consensus 24 ~~L~~P~~la~~p-dg~llVter~~G~i~~v~------~~~g~~~~i~~~~~~~~----~~~ge~---------GLLgia 83 (450)
T d1crua_ 24 SNLNKPHALLWGP-DNQIWLTERATGKILRVN------PESGSVKTVFQVPEIVN----DADGQN---------GLLGFA 83 (450)
T ss_dssp CCCSSEEEEEECT-TSCEEEEETTTCEEEEEC------TTTCCEEEEEECTTCCC----CTTSSC---------SEEEEE
T ss_pred CCCCCceEEEEeC-CCeEEEEEecCCEEEEEE------CCCCcEeecccCCcccc----ccCCCC---------ceeeEE
Confidence 4688999999998 899999998888999995 34566666665422100 011112 235899
Q ss_pred EccC----CcEEEEe
Q psy4832 299 IKAD----KTMFIAD 309 (770)
Q Consensus 299 vd~~----G~lYvaD 309 (770)
+|++ +.||++-
T Consensus 84 ~~Pdf~~n~~iYvsy 98 (450)
T d1crua_ 84 FHPDFKNNPYIYISG 98 (450)
T ss_dssp ECTTTTTSCEEEEEE
T ss_pred eCCCCccCCEEEEEE
Confidence 9874 7799863
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.52 E-value=5.6e-06 Score=85.90 Aligned_cols=141 Identities=17% Similarity=0.213 Sum_probs=88.0
Q ss_pred CcceEEE--ccCCc--EEEEeCC--C----eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCC
Q psy4832 293 HPKGLAI--KADKT--MFIADGT--N----IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPL 362 (770)
Q Consensus 293 ~P~gIav--d~~G~--lYvaD~~--~----Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~ 362 (770)
.|+||.+ +++|. |||.... + |.+++.++...+..+.- ....+..|++|++..
T Consensus 98 ~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v-----------------~~~~~~~pNDv~~~~- 159 (340)
T d1v04a_ 98 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI-----------------RHKLLPSVNDIVAVG- 159 (340)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE-----------------CCTTCSSEEEEEEEE-
T ss_pred eccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeec-----------------CCccccCccceEEec-
Confidence 6999987 44664 7777542 2 45565555433333321 123477899999998
Q ss_pred CCeEEEEeCC-------------------EEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCccccc
Q psy4832 363 DDSLHFIDDR-------------------VIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRAS 423 (770)
Q Consensus 363 ~g~lyv~D~~-------------------~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 423 (770)
+|.+|+++.+ .|+..++ +..++++
T Consensus 160 ~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~-~~~~~~~------------------------------------ 202 (340)
T d1v04a_ 160 PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-NDVRVVA------------------------------------ 202 (340)
T ss_dssp TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS-SCEEEEE------------------------------------
T ss_pred CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC-CceEEEc------------------------------------
Confidence 9999999731 2233222 1122221
Q ss_pred ccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCC
Q psy4832 424 NMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTS 502 (770)
Q Consensus 424 ~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~ 502 (770)
..+..|+||+++++++ |||+++..++|.+. .++.++.+....-.. --..
T Consensus 203 -~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y-~~~~~~~l~~~~~~~----------------------------l~~~ 252 (340)
T d1v04a_ 203 -EGFDFANGINISPDGKYVYIAELLAHKIHVY-EKHANWTLTPLRVLS----------------------------FDTL 252 (340)
T ss_dssp -EEESSEEEEEECTTSSEEEEEEGGGTEEEEE-EECTTSCEEEEEEEE----------------------------CSSE
T ss_pred -CCCCccceeEECCCCCEEEEEeCCCCeEEEE-EeCCCcccceEEEec----------------------------CCCC
Confidence 2367899999999885 99999999886443 344555544332101 0124
Q ss_pred eeEEEEcC-CCcEEEEc
Q psy4832 503 ISALSVSP-DGVVNVAD 518 (770)
Q Consensus 503 P~giav~~-dG~lyvaD 518 (770)
|..|.+++ +|.+|++-
T Consensus 253 pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 253 VDNISVDPVTGDLWVGC 269 (340)
T ss_dssp EEEEEECTTTCCEEEEE
T ss_pred CCccEEecCCCEEEEEE
Confidence 88999986 78999984
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.35 E-value=5e-05 Score=78.51 Aligned_cols=197 Identities=9% Similarity=0.086 Sum_probs=109.1
Q ss_pred ccCceEEEEcCCCCEEEEeC--------------ceEEEEcCC---CcEEE--EeccC-cccccceeEEEEeCC-CC--c
Q psy4832 179 LLTPVALTSGPDGSLYVGDF--------------NLVRRLTPE---GNVFT--VLQLS-ATQVSYQYYLALSPA-DG--H 235 (770)
Q Consensus 179 l~~P~~la~~~dG~lyv~d~--------------~~I~~i~~~---G~v~~--~~~~~-~~~~~~p~~lav~p~-~g--~ 235 (770)
...|.+|+++|+|.+|++.. +.|..++.+ .+... +.+.. ...-.+|.||.+... +| .
T Consensus 34 ~~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~ 113 (340)
T d1v04a_ 34 DNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 113 (340)
T ss_dssp CSCCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEE
T ss_pred CCCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEE
Confidence 34688999999999888752 356666532 22222 12111 112257999987421 34 5
Q ss_pred EEEEeC--CCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-
Q psy4832 236 LYISDA--EKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN- 312 (770)
Q Consensus 236 lyvsd~--~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~- 312 (770)
|||.+. ...+|-.+.. +.++......++-. ...+..|+.|++..+|.+|+++...
T Consensus 114 L~vvnH~~~~~~ieif~~-----~~~~~~l~~~~~v~-----------------~~~~~~pNDv~~~~~g~fy~Tnd~~~ 171 (340)
T d1v04a_ 114 LLVVNHPGSSSTVEVFKF-----QEEEKSLLHLKTIR-----------------HKLLPSVNDIVAVGPEHFYATNDHYF 171 (340)
T ss_dssp EEEEECSTTCCEEEEEEE-----ETTTTEEEEEEEEC-----------------CTTCSSEEEEEEEETTEEEEEESCSC
T ss_pred EEEEeccCCCceeEEEEE-----eCCCCeEEEEeecC-----------------CccccCccceEEecCCCEEEecCccC
Confidence 777764 3445543332 22333233332111 1236789999999999999996321
Q ss_pred ----eEEEC-----CCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEc--C
Q psy4832 313 ----IRVVS-----PEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLT--N 379 (770)
Q Consensus 313 ----Ir~id-----~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~--~ 379 (770)
.+.+. +.|.+...- + .........|.+|+||+++|.+..|||++ ..+|++++ .
T Consensus 172 ~~~~~~~~e~~~~~~~g~v~~~~----------~----~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~ 237 (340)
T d1v04a_ 172 IDPYLKSWEMHLGLAWSFVTYYS----------P----NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 237 (340)
T ss_dssp CSHHHHHHHHHTTCCCEEEEEEC----------S----SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cChhhhhhhHhhcCCceeEEEEc----------C----CceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence 00000 111111110 0 00111223478999999999344699999 47787765 4
Q ss_pred CCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcC-CCCEEEEeC
Q psy4832 380 DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSP-TGDLYIADI 446 (770)
Q Consensus 380 ~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~-~G~lyVaD~ 446 (770)
++.++...-.. .-..|..|.+|+ +|.+|++-.
T Consensus 238 ~~~l~~~~~~~-----------------------------------l~~~pDNi~~d~~~g~lwva~~ 270 (340)
T d1v04a_ 238 NWTLTPLRVLS-----------------------------------FDTLVDNISVDPVTGDLWVGCH 270 (340)
T ss_dssp TSCEEEEEEEE-----------------------------------CSSEEEEEEECTTTCCEEEEEE
T ss_pred CcccceEEEec-----------------------------------CCCCCCccEEecCCCEEEEEEC
Confidence 44443322100 113489999996 789999964
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.00 E-value=0.0027 Score=63.21 Aligned_cols=62 Identities=24% Similarity=0.335 Sum_probs=44.8
Q ss_pred cCceEEEEcCCCC-EEEEeC--ceEEEEcC-CCcEEEEeccCc--ccccceeEEEEeCCCCcEEEEeC
Q psy4832 180 LTPVALTSGPDGS-LYVGDF--NLVRRLTP-EGNVFTVLQLSA--TQVSYQYYLALSPADGHLYISDA 241 (770)
Q Consensus 180 ~~P~~la~~~dG~-lyv~d~--~~I~~i~~-~G~v~~~~~~~~--~~~~~p~~lav~p~~g~lyvsd~ 241 (770)
..|.+|++.|||. |||+.. +.|..++. +|+....+.... .....+.+++++|.+..+|++..
T Consensus 34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~ 101 (337)
T d1pbyb_ 34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES 101 (337)
T ss_dssp TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEE
T ss_pred CCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeec
Confidence 4588899999997 678764 58999985 477766554322 22456789999997778888764
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.98 E-value=0.0058 Score=61.24 Aligned_cols=66 Identities=15% Similarity=0.032 Sum_probs=43.3
Q ss_pred CceEEEEcCCCCEEE-EeCceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 181 TPVALTSGPDGSLYV-GDFNLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 181 ~P~~la~~~dG~lyv-~d~~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
.|..|+++|+|+.++ +..+.|..++. +++...++. ..-.....++++| +|++.++-...+.|+.++
T Consensus 19 ~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~---~H~~~v~~~~~sp-~g~~latg~~dg~i~iwd 86 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYT---EHSHQTTVAKTSP-SGYYCASGDVHGNVRIWD 86 (311)
T ss_dssp CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEEC---CCSSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEc---CCCCCEEEEEEeC-CCCeEeccccCceEeeee
Confidence 467789999887554 44456666654 455555552 1223468899998 677777766667777764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=97.94 E-value=0.0035 Score=62.59 Aligned_cols=62 Identities=11% Similarity=0.044 Sum_probs=41.7
Q ss_pred CcceEEEccCCc-EEEEeCCC--eEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEE
Q psy4832 293 HPKGLAIKADKT-MFIADGTN--IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLH 367 (770)
Q Consensus 293 ~P~gIavd~~G~-lYvaD~~~--Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~ly 367 (770)
.|.+|+++|||. |||+.... |..+|.. +++...+..... .......|.+++++| +| .||
T Consensus 41 ~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~---------------~~~~~~~~~~v~~s~-DG~~l~ 104 (346)
T d1jmxb_ 41 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV---------------PGEVGRSMYSFAISP-DGKEVY 104 (346)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS---------------TTEEEECSSCEEECT-TSSEEE
T ss_pred CcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccc---------------ccccCCceEEEEEec-CCCEEE
Confidence 588999999987 78987544 8888854 544433222111 012345799999999 66 588
Q ss_pred EEe
Q psy4832 368 FID 370 (770)
Q Consensus 368 v~D 370 (770)
++.
T Consensus 105 v~~ 107 (346)
T d1jmxb_ 105 ATV 107 (346)
T ss_dssp EEE
T ss_pred EEe
Confidence 886
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=97.93 E-value=0.0029 Score=63.20 Aligned_cols=103 Identities=8% Similarity=0.040 Sum_probs=66.7
Q ss_pred EEEcCCCCEEEE-eC-ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCc
Q psy4832 185 LTSGPDGSLYVG-DF-NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSIN 261 (770)
Q Consensus 185 la~~~dG~lyv~-d~-~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~ 261 (770)
+|+.++|..+++ .. +.|..+|.+ +++...+.. ..-..|.+|+++|.+..|||+...+++|..++. .++.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~--~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~------~t~~ 73 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL------DTCK 73 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--SSCCSSCEEEECTTSSEEEEEETTTTEEEEEET------TTTE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc--CCCCCcceEEECCCCCEEEEEECCCCcEEEEeC------ccCe
Confidence 466777776654 33 589999864 666655432 123468999999955678999999999999963 2333
Q ss_pred EEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeC
Q psy4832 262 WEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADG 310 (770)
Q Consensus 262 ~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~ 310 (770)
.......+.. .......|.+++++++|. ||++..
T Consensus 74 ~~~~~~~~~~---------------~~~~~~~~~~v~~s~DG~~l~v~~~ 108 (346)
T d1jmxb_ 74 NTFHANLSSV---------------PGEVGRSMYSFAISPDGKEVYATVN 108 (346)
T ss_dssp EEEEEESCCS---------------TTEEEECSSCEEECTTSSEEEEEEE
T ss_pred eeeeeccccc---------------ccccCCceEEEEEecCCCEEEEEec
Confidence 3222111110 112345799999999987 888764
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.93 E-value=0.0063 Score=60.34 Aligned_cols=89 Identities=11% Similarity=0.091 Sum_probs=55.1
Q ss_pred ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCC
Q psy4832 199 NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDE 277 (770)
Q Consensus 199 ~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~ 277 (770)
++|..+|.. +++...+.. ......|.+|+++|.+..||++...++.|..++. .+++.........
T Consensus 11 ~~v~v~D~~s~~~~~~i~~-~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~------~t~~~~~~~~~~~------- 76 (337)
T d1pbyb_ 11 DKLVVIDTEKMAVDKVITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL------VTGETLGRIDLST------- 76 (337)
T ss_dssp TEEEEEETTTTEEEEEEEC-TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEET------TTCCEEEEEECCB-------
T ss_pred CEEEEEECCCCeEEEEEEC-CCCCCCccEEEECCCCCEEEEEECCCCeEEEEEC------CCCcEEEEEecCC-------
Confidence 566666643 565555433 2234568999999854568899988899999963 2344332221100
Q ss_pred CCcCCCcccccccccCcceEEEccCCc-EEEEeC
Q psy4832 278 TNCGDNGPALAAKLSHPKGLAIKADKT-MFIADG 310 (770)
Q Consensus 278 ~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~ 310 (770)
.......|.++++.++|. +|++..
T Consensus 77 ---------~~~~~~~~~~v~~s~dg~~l~~~~~ 101 (337)
T d1pbyb_ 77 ---------PEERVKSLFGAALSPDGKTLAIYES 101 (337)
T ss_dssp ---------TTEEEECTTCEEECTTSSEEEEEEE
T ss_pred ---------CcccccceeeEEEcCCCcEEEEeec
Confidence 012234688999999886 666643
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.89 E-value=0.00088 Score=69.11 Aligned_cols=68 Identities=10% Similarity=0.031 Sum_probs=49.2
Q ss_pred EEEEcCCCC-EEEEeC-----------ceEEEEcCC-CcEEEEeccCc----ccccceeEEEEeCCCCcEEEEeCCCcEE
Q psy4832 184 ALTSGPDGS-LYVGDF-----------NLVRRLTPE-GNVFTVLQLSA----TQVSYQYYLALSPADGHLYISDAEKHQI 246 (770)
Q Consensus 184 ~la~~~dG~-lyv~d~-----------~~I~~i~~~-G~v~~~~~~~~----~~~~~p~~lav~p~~g~lyvsd~~~~~I 246 (770)
.+++.|||. ||++.. +.|+.+|.. ++....+..+. .....|.+++++|.+..|||++...+.|
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v 148 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence 688999986 888763 359999864 66665554321 1234678999999777899999887888
Q ss_pred EEEec
Q psy4832 247 LRVLS 251 (770)
Q Consensus 247 ~~i~~ 251 (770)
..++.
T Consensus 149 ~~~d~ 153 (368)
T d1mdah_ 149 AGLSV 153 (368)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 87754
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.88 E-value=0.016 Score=60.70 Aligned_cols=108 Identities=12% Similarity=-0.078 Sum_probs=64.2
Q ss_pred cCCCeEEECCCccE-EecccCCCeEEEEecc-CccC-CccCCCCCcccccccccCceEEEEcCCCC-EEEEeC-ceEEEE
Q psy4832 130 FHEGILQKGDGSSL-HLKHEFPRTVSVVMGT-GLQR-PLVCKDCDGVARDARLLTPVALTSGPDGS-LYVGDF-NLVRRL 204 (770)
Q Consensus 130 ~~~gil~~~dG~~~-~~~~~~~~~i~~v~g~-G~~~-~~~~~~~~g~~~~~~l~~P~~la~~~dG~-lyv~d~-~~I~~i 204 (770)
.|..+++..|..++ ++....++.|.++... |+.. .+ .. =..|.+|++.|||. ||++.. +.|+.+
T Consensus 20 ~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l----------~~-g~~~~~vafSPDGk~l~~~~~d~~v~vw 88 (426)
T d1hzua2 20 RPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVI----------DT-GYAVHISRMSASGRYLLVIGRDARIDMI 88 (426)
T ss_dssp SCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEE----------EC-CSSEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred CCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEE----------eC-CCCeeEEEECCCCCEEEEEeCCCCEEEE
Confidence 34444454554444 3555466778777653 2211 11 00 03589999999998 667765 588888
Q ss_pred cCC-CcEEEEeccCcccccceeEEEEe----CCCCcEEEEeCCCcEEEEEe
Q psy4832 205 TPE-GNVFTVLQLSATQVSYQYYLALS----PADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 205 ~~~-G~v~~~~~~~~~~~~~p~~lav~----p~~g~lyvsd~~~~~I~~i~ 250 (770)
+.+ ++...+... .....|.+++++ |.+..||++....+.+..++
T Consensus 89 d~~t~~~~~~~~i--~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d 137 (426)
T d1hzua2 89 DLWAKEPTKVAEI--KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD 137 (426)
T ss_dssp ETTSSSCEEEEEE--ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEE
T ss_pred EccCCceeEEEEE--eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEc
Confidence 854 543333221 122356777665 43456889888888887775
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.83 E-value=0.0069 Score=59.42 Aligned_cols=186 Identities=21% Similarity=0.205 Sum_probs=101.3
Q ss_pred ceEEEEcCCCCEEEE-eC-ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC
Q psy4832 182 PVALTSGPDGSLYVG-DF-NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP 258 (770)
Q Consensus 182 P~~la~~~dG~lyv~-d~-~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~ 258 (770)
-.+|++.|+|.++++ .. +.|+.++. +|+....+.. ..-.....++++| ++.++++... +.|+.++....
T Consensus 15 V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~--~h~~~v~~v~~~~-~g~~~~~~~d-~~v~~~~~~~~---- 86 (299)
T d1nr0a2 15 ITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD--VHATMITGIKTTS-KGDLFTVSWD-DHLKVVPAGGS---- 86 (299)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC--SCSSCEEEEEECT-TSCEEEEETT-TEEEEECSSSS----
T ss_pred cEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcC--CCCCcEEEEEeec-cceeecccce-eeEEEeccCCc----
Confidence 367889999987664 33 47888874 4665555421 1223357899997 7788776654 56666632110
Q ss_pred CCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECCCCcEEEeecCCCCCCCcCC
Q psy4832 259 SINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSPEGIIHTLIGHHKHHNIWSP 337 (770)
Q Consensus 259 ~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~~G~i~t~~g~~~~~~~~~p 337 (770)
...+.. ......-..+..+++.++|.+.++...+ ++..+.. +...+.-.
T Consensus 87 ----------~~~~~~----------~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~-~~~~~~~~--------- 136 (299)
T d1nr0a2 87 ----------GVDSSK----------AVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG-KLTEVPIS--------- 136 (299)
T ss_dssp ----------SSCTTS----------CCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT-EEEEEECS---------
T ss_pred ----------cccccc----------cccccccccccccccccccccccccccccccccccc-cccccccc---------
Confidence 000000 0001112256789999988866665544 6555533 22222110
Q ss_pred CccCCCcccccccccCcceEEEeCCCCeEEEE-e-CCEEEEEcC-CCcEEEEecCCCCCCCCCCCCcccccccccccccc
Q psy4832 338 FNCHRSFPASTAQLQWPTGLALSPLDDSLHFI-D-DRVIFKLTN-DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKST 414 (770)
Q Consensus 338 ~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~-D-~~~I~~i~~-~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (770)
..+..++++| ++.++++ . ++.|..++. ++++..+....
T Consensus 137 --------------~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~------------------------ 177 (299)
T d1nr0a2 137 --------------YNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIV------------------------ 177 (299)
T ss_dssp --------------SCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEE------------------------
T ss_pred --------------cccccccccc-ccccccccccccccccccccccccccccccc------------------------
Confidence 1245688888 6665443 3 566776663 33333222100
Q ss_pred ccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEc
Q psy4832 415 VQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVID 458 (770)
Q Consensus 415 ~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~ 458 (770)
.-..+..+++++++.++++-...+. |+..+
T Consensus 178 -----------~~~~i~~~~~~~~~~~l~~~~~d~~---i~~~~ 207 (299)
T d1nr0a2 178 -----------HPAEITSVAFSNNGAFLVATDQSRK---VIPYS 207 (299)
T ss_dssp -----------CSSCEEEEEECTTSSEEEEEETTSC---EEEEE
T ss_pred -----------ccccccccccccccccccccccccc---ccccc
Confidence 0123688999999986665555443 45554
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.81 E-value=3.4e-05 Score=82.07 Aligned_cols=253 Identities=9% Similarity=-0.056 Sum_probs=131.9
Q ss_pred CceEEEEc--CCCC-EEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCC
Q psy4832 181 TPVALTSG--PDGS-LYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLES 254 (770)
Q Consensus 181 ~P~~la~~--~dG~-lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~ 254 (770)
.|.....+ |||. |||+|. ++|.+|+.+ ++...++.. .....|.+++++|....+||+....+.+..... ..
T Consensus 71 hP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~i--P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~d-g~ 147 (441)
T d1qnia2 71 HPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHI--PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND-GT 147 (441)
T ss_dssp CCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC--TTCCCEEEEEECCSSBCCEEEEEECSCEESSCS-SS
T ss_pred CCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEec--CCCCCccceEEeccCCEEEEEeccCCcccccCc-cc
Confidence 46555554 6885 999997 599999965 566666543 234679999999867778998766555432110 00
Q ss_pred ccCCCCcEEEEE--CCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEECC-CC-cEEEeec
Q psy4832 255 VADPSINWEVAV--GSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVSP-EG-IIHTLIG 327 (770)
Q Consensus 255 ~~~~~g~~~~va--G~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id~-~G-~i~t~~g 327 (770)
..+.+.....+. ..... .....-..-..|.+++++++|. +|++..+. +..++. .. .+..
T Consensus 148 ~~~~~~~~~~~~~iD~~t~-----------~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~--- 213 (441)
T d1qnia2 148 DFSLDNSYTMFTAIDAETM-----------DVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDW--- 213 (441)
T ss_dssp CCCGGGEEEEEEEEETTTC-----------SEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCE---
T ss_pred ccccccccceEEeecCccc-----------eeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEE---
Confidence 001111111111 00000 0000000012689999999987 77776442 222210 00 0000
Q ss_pred CCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEeCCEEEEEcCC--CcEEEEecCCCCCCCCCCCCcccc
Q psy4832 328 HHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFIDDRVIFKLTND--LKVKIVAGIPLHCRTGDKDKRDFK 404 (770)
Q Consensus 328 ~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D~~~I~~i~~~--G~v~~vaG~~~~~~~~~~~~~~~~ 404 (770)
-..+++|..+++.+ +|. +++.+++.+...... +.+..+.
T Consensus 214 --------------------i~v~n~p~~~~~~~-dGk~~~v~~~~v~vvd~~~~~~v~~~IP----------------- 255 (441)
T d1qnia2 214 --------------------VVVFNVERIAAAVK-AGNFKTIGDSKVPVVDGRGESEFTRYIP----------------- 255 (441)
T ss_dssp --------------------EEEEEHHHHHHHHH-TTCCBCCTTCCCCEEECSSSCSSEEEEC-----------------
T ss_pred --------------------EEeCCccceEEEec-CCCEEEeCCCCcEEEEcccCCceEEEEe-----------------
Confidence 11245777888887 665 343333322222211 1122221
Q ss_pred ccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCc
Q psy4832 405 DKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCA 483 (770)
Q Consensus 405 ~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~ 483 (770)
.-..|+|++++|||. +|++...... |..+|-.-....+.+.. ... .
T Consensus 256 ---------------------vgksPhGv~vSPDGkyl~~~~~~~~t---vsv~d~~k~~~~~~~~~--~~~-------~ 302 (441)
T d1qnia2 256 ---------------------VPKNPHGLNTSPDGKYFIANGKLSPT---VSVIAIDKLDDLFEDKI--ELR-------D 302 (441)
T ss_dssp ---------------------CBSSCCCEEECTTSCEEEEECTTSSB---EEEEEGGGHHHHTTTSS--CGG-------G
T ss_pred ---------------------CCCCccCceECCCCCEEEEeCCcCCc---EEEEEeehhhhHhhccC--Ccc-------e
Confidence 014599999999998 7888777664 45555321111112111 000 0
Q ss_pred ccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeec
Q psy4832 484 EFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQH 529 (770)
Q Consensus 484 ~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~ 529 (770)
|.. +....--.|...+++++|..|.+-.....|.+...
T Consensus 303 ~~~--------~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~ 340 (441)
T d1qnia2 303 TIV--------AEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI 340 (441)
T ss_dssp GEE--------ECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred EEE--------eecccccCcccceecCCceEEEcccccceEEEecc
Confidence 010 00001124788899999999999877777766643
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=0.0095 Score=59.95 Aligned_cols=222 Identities=14% Similarity=0.061 Sum_probs=120.3
Q ss_pred ceEEEEcCCCCEEEE-eC-ceEEEEcCCC---cEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCcc
Q psy4832 182 PVALTSGPDGSLYVG-DF-NLVRRLTPEG---NVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVA 256 (770)
Q Consensus 182 P~~la~~~dG~lyv~-d~-~~I~~i~~~G---~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~ 256 (770)
-.+|++.|+|+++++ .. +.|+.++... +....+. ........++++| ++.+.++-..+..|..++.
T Consensus 100 I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~----- 170 (337)
T d1gxra_ 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT---SSAPACYALAISP-DSKVCFSCCSDGNIAVWDL----- 170 (337)
T ss_dssp EEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE---CSSSCEEEEEECT-TSSEEEEEETTSCEEEEET-----
T ss_pred EEEEEEcCCCCEEEEeecccccccccccccccccccccc---ccccccccccccc-ccccccccccccccccccc-----
Confidence 368999999986654 33 5787777543 2222221 1223346788887 6666666666667777642
Q ss_pred CCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEE-EEeCCC-eEEECC-CCcEEEeecCCCCCC
Q psy4832 257 DPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMF-IADGTN-IRVVSP-EGIIHTLIGHHKHHN 333 (770)
Q Consensus 257 ~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lY-vaD~~~-Ir~id~-~G~i~t~~g~~~~~~ 333 (770)
.++........ .-.....|++.+++..+ ++...+ |+..+. .++........
T Consensus 171 -~~~~~~~~~~~---------------------~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~---- 224 (337)
T d1gxra_ 171 -HNQTLVRQFQG---------------------HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT---- 224 (337)
T ss_dssp -TTTEEEEEECC---------------------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS----
T ss_pred -ccccccccccc---------------------cccccccccccccccccccccccccccccccccceeecccccc----
Confidence 22332222110 01124578888877644 444434 777664 34433322211
Q ss_pred CcCCCccCCCcccccccccCcceEEEeCCCCeEEE-Ee-CCEEEEEcCC-CcEEEEecCCCCCCCCCCCCcccccccccc
Q psy4832 334 IWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHF-ID-DRVIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKT 410 (770)
Q Consensus 334 ~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv-~D-~~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~ 410 (770)
.....|+++| ++++.+ +. ++.|..++.+ +......+
T Consensus 225 ------------------~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------------------- 263 (337)
T d1gxra_ 225 ------------------SQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLHL---------------------- 263 (337)
T ss_dssp ------------------SCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEEEECC----------------------
T ss_pred ------------------cceEEEEEcc-cccccceeccccccccccccccccccccc----------------------
Confidence 1356789998 665444 44 4666666643 22222111
Q ss_pred ccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCcccccCc
Q psy4832 411 KKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNS 489 (770)
Q Consensus 411 ~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~ 489 (770)
.-....+|+++|+|.++++-...+. |+..+. +++.....+.
T Consensus 264 ---------------~~~~i~~v~~s~~g~~l~s~s~Dg~---i~iwd~~~~~~~~~~~~-------------------- 305 (337)
T d1gxra_ 264 ---------------HESCVLSLKFAYCGKWFVSTGKDNL---LNAWRTPYGASIFQSKE-------------------- 305 (337)
T ss_dssp ---------------CSSCEEEEEECTTSSEEEEEETTSE---EEEEETTTCCEEEEEEC--------------------
T ss_pred ---------------cccccceEEECCCCCEEEEEeCCCe---EEEEECCCCCEEEEccC--------------------
Confidence 0123588999999997777655554 555553 4443222110
Q ss_pred cCcccccceecCCeeEEEEcCCCcEEEEcC--CCceEEee
Q psy4832 490 KETLLTSTARFTSISALSVSPDGVVNVADQ--GSLHILAL 527 (770)
Q Consensus 490 ~d~~~~~~~~l~~P~giav~~dG~lyvaD~--~~~~I~~i 527 (770)
-..+..++++|+|.++++-. +.-+|+.+
T Consensus 306 ----------~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 306 ----------SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ----------SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ----------CCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 12367899999998766533 33445543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.74 E-value=0.0035 Score=63.30 Aligned_cols=110 Identities=12% Similarity=0.081 Sum_probs=62.7
Q ss_pred EcCCCC-EEEEeC------ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCC---------CcEEEEE
Q psy4832 187 SGPDGS-LYVGDF------NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAE---------KHQILRV 249 (770)
Q Consensus 187 ~~~dG~-lyv~d~------~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~---------~~~I~~i 249 (770)
..|||. +||++. +.|..+|.+ |+++..+..+ ...+++++|.+..||+++.. .+.|+.+
T Consensus 9 ~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g-----~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~ 83 (355)
T d2bbkh_ 9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-----FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVF 83 (355)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-----SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC-----CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEE
Confidence 346775 788764 268888864 6665544321 22379999966679998642 3467777
Q ss_pred eccCCccCCCCcEEE-EE-CCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC---eEEECC-CCcE
Q psy4832 250 LSLESVADPSINWEV-AV-GSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN---IRVVSP-EGII 322 (770)
Q Consensus 250 ~~~~~~~~~~g~~~~-va-G~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~---Ir~id~-~G~i 322 (770)
+. .++.... +. ..... ......|.++++.++|. +|++.... ++.++. .+.+
T Consensus 84 D~------~t~~~~~~~~~~~~~~----------------~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 141 (355)
T d2bbkh_ 84 DP------VTLLPTADIELPDAPR----------------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141 (355)
T ss_dssp CT------TTCCEEEEEEETTCCC----------------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EC------CCCCEEEEEecCCcce----------------eecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence 42 1233221 11 11100 11134688999999886 78876443 555553 3444
Q ss_pred E
Q psy4832 323 H 323 (770)
Q Consensus 323 ~ 323 (770)
.
T Consensus 142 ~ 142 (355)
T d2bbkh_ 142 K 142 (355)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=97.73 E-value=0.032 Score=56.31 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=38.4
Q ss_pred ceEEEEcCCCC-EEEEeC------ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCC
Q psy4832 182 PVALTSGPDGS-LYVGDF------NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEK 243 (770)
Q Consensus 182 P~~la~~~dG~-lyv~d~------~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~ 243 (770)
...+++.|||. +|++.. ..|+.+|. +|++...+..+ .+.+++++|....||++....
T Consensus 23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~-----~~~~~a~SpDG~~l~va~~~~ 87 (373)
T d2madh_ 23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-----FLPNPVAAHSGSEFALASTSF 87 (373)
T ss_pred ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC-----CCccEEEcCCCCEEEEEeecC
Confidence 35667788885 777643 36888874 57777655321 233799999777888887543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.66 E-value=0.0035 Score=64.37 Aligned_cols=99 Identities=5% Similarity=-0.145 Sum_probs=55.7
Q ss_pred eEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCC---------CcEEEEEeccCCccCCCCcEEEEE--C
Q psy4832 200 LVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAE---------KHQILRVLSLESVADPSINWEVAV--G 267 (770)
Q Consensus 200 ~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~---------~~~I~~i~~~~~~~~~~g~~~~va--G 267 (770)
.|..++.+ |+....+.. .+ .| .++++|....||++... ...|..++. .++...... .
T Consensus 47 ~~~~~d~~~~~~~~~~~~---~~-~~-~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~------~t~~~~~~i~~p 115 (368)
T d1mdah_ 47 ENWVSCAGCGVTLGHSLG---AF-LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP------VTFLPIADIELP 115 (368)
T ss_dssp EEEEEETTTTEEEEEEEE---CT-TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT------TTCCEEEEEEET
T ss_pred eEEEEeCCCCcEEEEEeC---CC-CC-cceECCCCCEEEEEcccCccccccccCCeEEEEEC------CCCcEeeeecCC
Confidence 57777755 455444421 11 23 68999966779998642 245777742 123322111 1
Q ss_pred CCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCC--CeEEECC-CCcEEEe
Q psy4832 268 SGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGT--NIRVVSP-EGIIHTL 325 (770)
Q Consensus 268 ~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~--~Ir~id~-~G~i~t~ 325 (770)
.+.. ......|.+|++.+||. |||++.. .|+.+|. .+++...
T Consensus 116 ~~~~----------------~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~ 161 (368)
T d1mdah_ 116 DAPR----------------FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQL 161 (368)
T ss_dssp TSCS----------------CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEE
T ss_pred ccce----------------ecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEE
Confidence 1111 01123688999999996 9998743 3887874 3454443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.65 E-value=0.021 Score=59.64 Aligned_cols=164 Identities=9% Similarity=0.006 Sum_probs=93.5
Q ss_pred cCCCeEEECCCccEEecccCCCeEEEEecc-CccCCccCCCCCcccccccccCceEEEEc----CCCC-EEEEeC--ceE
Q psy4832 130 FHEGILQKGDGSSLHLKHEFPRTVSVVMGT-GLQRPLVCKDCDGVARDARLLTPVALTSG----PDGS-LYVGDF--NLV 201 (770)
Q Consensus 130 ~~~gil~~~dG~~~~~~~~~~~~i~~v~g~-G~~~~~~~~~~~g~~~~~~l~~P~~la~~----~dG~-lyv~d~--~~I 201 (770)
.+.++.+.+||..+|++. ..+.|.++... ++.. ..+.-.....|.++++. |||. ||++.. +.+
T Consensus 63 ~~~~vafSPDGk~l~~~~-~d~~v~vwd~~t~~~~--------~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v 133 (426)
T d1hzua2 63 AVHISRMSASGRYLLVIG-RDARIDMIDLWAKEPT--------KVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQF 133 (426)
T ss_dssp SEEEEEECTTSCEEEEEE-TTSEEEEEETTSSSCE--------EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEE
T ss_pred CeeEEEECCCCCEEEEEe-CCCCEEEEEccCCcee--------EEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeE
Confidence 366899999999999887 66777777643 2211 01111222356667665 5887 567654 567
Q ss_pred EEEcCC-CcEEEEeccCc--------ccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccc
Q psy4832 202 RRLTPE-GNVFTVLQLSA--------TQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERC 272 (770)
Q Consensus 202 ~~i~~~-G~v~~~~~~~~--------~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~ 272 (770)
+.++.. +....+..... ..-..+..++.++....++++....++|..+.... .........+.
T Consensus 134 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~---- 205 (426)
T d1hzua2 134 AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD----IDNLTVTSIGA---- 205 (426)
T ss_dssp EEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSS----SSSCEEEEEEC----
T ss_pred EEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecc----ccceeeEEecc----
Confidence 777644 55554432211 01122456777776667778888777777664321 11111111111
Q ss_pred cCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEEC-CCCcEEEeecC
Q psy4832 273 IPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVS-PEGIIHTLIGH 328 (770)
Q Consensus 273 ~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id-~~G~i~t~~g~ 328 (770)
-..|.+++++++|. +|++.... +..++ .++.+......
T Consensus 206 ------------------~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 247 (426)
T d1hzua2 206 ------------------APFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV 247 (426)
T ss_dssp ------------------CSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEEC
T ss_pred ------------------CCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEecc
Confidence 12588999999887 55655433 66665 45666555443
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=97.60 E-value=0.043 Score=57.48 Aligned_cols=192 Identities=11% Similarity=-0.021 Sum_probs=105.3
Q ss_pred EEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCc
Q psy4832 194 YVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGE 270 (770)
Q Consensus 194 yv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~ 270 (770)
+|+.. +.|..+|.+ +++...+..+ ..|++++++|.+..||++.. .+.|..++..+ .+.....-..
T Consensus 35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g----~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t----~~~~~~~~i~--- 102 (432)
T d1qksa2 35 SVTLRDAGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGR-DGKVNMIDLWM----KEPTTVAEIK--- 102 (432)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEET-TSEEEEEETTS----SSCCEEEEEE---
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEeCC----CCeeEEEECCCCCEEEEEcC-CCCEEEEEeeC----CCceEEEEEe---
Confidence 34443 467777754 6777666432 25999999996667888765 46777775321 0111111111
Q ss_pred cccCCCCCCcCCCcccccccccCcceEEEc----cCCc-EEEEeCCC--eEEECCC-CcEEEee-cCCCCCCCcCCCccC
Q psy4832 271 RCIPGDETNCGDNGPALAAKLSHPKGLAIK----ADKT-MFIADGTN--IRVVSPE-GIIHTLI-GHHKHHNIWSPFNCH 341 (770)
Q Consensus 271 ~~~p~~~~~~g~~g~~~~a~l~~P~gIavd----~~G~-lYvaD~~~--Ir~id~~-G~i~t~~-g~~~~~~~~~p~~~~ 341 (770)
....|.++++. +||. ||++.... |+.+|.. +.+.... +.....
T Consensus 103 -------------------~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~--------- 154 (432)
T d1qksa2 103 -------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY--------- 154 (432)
T ss_dssp -------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT---------
T ss_pred -------------------cCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccc---------
Confidence 11246677664 4787 77876533 8888854 5444333 221110
Q ss_pred CCcccccccccCcceEEEeCCCCe-EEEEe--CCEEEEEcC-CCcEEEEecCCCCCCCCCCCCccccccccccccccccC
Q psy4832 342 RSFPASTAQLQWPTGLALSPLDDS-LHFID--DRVIFKLTN-DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQD 417 (770)
Q Consensus 342 ~~~~~~~~~l~~P~gla~d~~~g~-lyv~D--~~~I~~i~~-~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (770)
.......-..+.++++++ +|. ++++. .+.|..++. +++...+.-.+.
T Consensus 155 --~~~~~~~~~~~~~v~~s~-dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~-------------------------- 205 (432)
T d1qksa2 155 --DEQEYHPEPRVAAILASH-YRPEFIVNVKETGKILLVDYTDLNNLKTTEISA-------------------------- 205 (432)
T ss_dssp --TTCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC--------------------------
T ss_pred --cceeccCCCceeEEEECC-CCCEEEEEEccCCeEEEEEccCCCcceEEEEcc--------------------------
Confidence 000001122355788888 664 56664 578888873 333221110000
Q ss_pred CcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcEEEe
Q psy4832 418 DSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRMFDF 466 (770)
Q Consensus 418 ~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i~~~ 466 (770)
=..|.+++++|+|. +|++....+. +..++. .+++...
T Consensus 206 ---------g~~~~~~~~spdg~~~~va~~~~~~---v~v~d~~~~~~~~~ 244 (432)
T d1qksa2 206 ---------ERFLHDGGLDGSHRYFITAANARNK---LVVIDTKEGKLVAI 244 (432)
T ss_dssp ---------CSSEEEEEECTTSCEEEEEEGGGTE---EEEEETTTTEEEEE
T ss_pred ---------cCccccceECCCCCEEEEeccccce---EEEeecccceEEEE
Confidence 02489999999998 7888777654 566665 4444333
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=97.53 E-value=0.0051 Score=65.02 Aligned_cols=154 Identities=8% Similarity=-0.014 Sum_probs=90.5
Q ss_pred CcceEEEccCCc-EEEEeCCC-eEEECCC-Cc--EEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEe----CCC
Q psy4832 293 HPKGLAIKADKT-MFIADGTN-IRVVSPE-GI--IHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS----PLD 363 (770)
Q Consensus 293 ~P~gIavd~~G~-lYvaD~~~-Ir~id~~-G~--i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d----~~~ 363 (770)
.|++|++.|||+ ||++...+ |+++|.+ +. +..-+.. ...|.+++++ | |
T Consensus 63 ~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~----------------------~~~~~~~~~s~~~Sp-D 119 (432)
T d1qksa2 63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI----------------------GSEARSIETSKMEGW-E 119 (432)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC----------------------CSEEEEEEECCSTTC-T
T ss_pred CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEec----------------------CCCCCCeEEecccCC-C
Confidence 488999999998 88877555 8887743 21 2211111 1235566554 4 6
Q ss_pred Ce-EEEEe--CCEEEEEcC-CCcEE-EEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCC
Q psy4832 364 DS-LHFID--DRVIFKLTN-DLKVK-IVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPT 438 (770)
Q Consensus 364 g~-lyv~D--~~~I~~i~~-~G~v~-~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~ 438 (770)
|+ ||++. .+.|..++. .+++. ++.+........ .-..-..+.+|+++++
T Consensus 120 G~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~v~~s~d 173 (432)
T d1qksa2 120 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQ--------------------------EYHPEPRVAAILASHY 173 (432)
T ss_dssp TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTC--------------------------CEESCCCEEEEEECSS
T ss_pred CCEEEEEcCCCCeEEEEeCccccceeeeccCCccccce--------------------------eccCCCceeEEEECCC
Confidence 65 78876 688988884 45544 333321111000 0011234678899998
Q ss_pred CC-EEEEeCCCCceeeEEEEcC-CCc---EEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCc
Q psy4832 439 GD-LYIADIDARKVNALRVIDS-TGR---MFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGV 513 (770)
Q Consensus 439 G~-lyVaD~~~~ri~~i~~i~~-~G~---i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~ 513 (770)
|. ++++-...+. |..++. +++ +..+.. =..|.+++++|||.
T Consensus 174 g~~~~vs~~~~~~---i~~~d~~~~~~~~~~~i~~-------------------------------g~~~~~~~~spdg~ 219 (432)
T d1qksa2 174 RPEFIVNVKETGK---ILLVDYTDLNNLKTTEISA-------------------------------ERFLHDGGLDGSHR 219 (432)
T ss_dssp SSEEEEEETTTTE---EEEEETTCSSEEEEEEEEC-------------------------------CSSEEEEEECTTSC
T ss_pred CCEEEEEEccCCe---EEEEEccCCCcceEEEEcc-------------------------------cCccccceECCCCC
Confidence 87 6777777665 455543 333 222210 02488999999997
Q ss_pred -EEEEcCCCceEEeeec
Q psy4832 514 -VNVADQGSLHILALQH 529 (770)
Q Consensus 514 -lyvaD~~~~~I~~i~~ 529 (770)
+|++....+.+..+..
T Consensus 220 ~~~va~~~~~~v~v~d~ 236 (432)
T d1qksa2 220 YFITAANARNKLVVIDT 236 (432)
T ss_dssp EEEEEEGGGTEEEEEET
T ss_pred EEEEeccccceEEEeec
Confidence 6777766667666544
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.50 E-value=0.033 Score=56.69 Aligned_cols=65 Identities=9% Similarity=-0.036 Sum_probs=38.9
Q ss_pred eEEEEcCCCCEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEE
Q psy4832 183 VALTSGPDGSLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRV 249 (770)
Q Consensus 183 ~~la~~~dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i 249 (770)
.++++.|||+++++-. +.|+.++.+ ++...+..+ ...-.....|+++| ++++.++-..++.|+.+
T Consensus 11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l-~gH~~~V~~l~fsp-~~~~l~s~s~D~~i~vW 78 (371)
T d1k8kc_ 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVW 78 (371)
T ss_dssp CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEET-TTTEEEEEETTSCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEe-cCCCCCEEEEEECC-CCCEEEEEECCCeEEEE
Confidence 6889999998776433 467777755 433332211 11122357899998 66665555445556555
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.41 E-value=2.6e-05 Score=82.95 Aligned_cols=228 Identities=12% Similarity=-0.015 Sum_probs=122.2
Q ss_pred ECCCccEEecccCCCeEEEEecc-CccCCccCCCCCcccccccccCceEEEEcCCCC-EEEEeC--ce------------
Q psy4832 137 KGDGSSLHLKHEFPRTVSVVMGT-GLQRPLVCKDCDGVARDARLLTPVALTSGPDGS-LYVGDF--NL------------ 200 (770)
Q Consensus 137 ~~dG~~~~~~~~~~~~i~~v~g~-G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~-lyv~d~--~~------------ 200 (770)
..||..+|+.+..+.+|.++.-. +... ....-.....|.++++.|+|+ +||+.. +.
T Consensus 80 tpDGr~lfV~d~~~~rVavIDl~t~k~~--------~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~ 151 (441)
T d1qnia2 80 RYDGKYLFINDKANTRVARIRLDIMKTD--------KITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSL 151 (441)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEE--------EEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCG
T ss_pred cCCCCEEEEEcCCCCEEEEEECCCCcEe--------eEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccc
Confidence 46899999999888899888642 2111 000111235699999999886 677643 22
Q ss_pred ------EEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCcccc
Q psy4832 201 ------VRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCI 273 (770)
Q Consensus 201 ------I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~ 273 (770)
+..+++. .++...+.. -..|.+++++|.++.+|++..+...+..++.... .....
T Consensus 152 ~~~~~~~~~iD~~t~~v~~qI~v----~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~-----~~~d~--------- 213 (441)
T d1qnia2 152 DNSYTMFTAIDAETMDVAWQVIV----DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMR-----NDRDW--------- 213 (441)
T ss_dssp GGEEEEEEEEETTTCSEEEEEEE----SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTC-----SSBCE---------
T ss_pred ccccceEEeecCccceeeEEEec----CCCccceEECCCCCEEEEEecCCCceEEEeccCc-----ceEEE---------
Confidence 2345443 222222111 1358999999978889999887665544422110 00000
Q ss_pred CCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCCeEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccc
Q psy4832 274 PGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTNIRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQL 351 (770)
Q Consensus 274 p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l 351 (770)
-..++.|.++++.++|. +++.+.+.+...... ..+...+..+
T Consensus 214 --------------i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg---------------------- 257 (441)
T d1qnia2 214 --------------VVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP---------------------- 257 (441)
T ss_dssp --------------EEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCB----------------------
T ss_pred --------------EEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCC----------------------
Confidence 11234577777777776 333322223333222 2222223222
Q ss_pred cCcceEEEeCCCCe-EEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccC
Q psy4832 352 QWPTGLALSPLDDS-LHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLG 428 (770)
Q Consensus 352 ~~P~gla~d~~~g~-lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 428 (770)
.+|.|++++| +|. +|++. .+.|..++-+-.-..+.+.- +. ..+ ..+.-..-.
T Consensus 258 ksPhGv~vSP-DGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~--------~~-----------~~~-----~~~~~~~gl 312 (441)
T d1qnia2 258 KNPHGLNTSP-DGKYFIANGKLSPTVSVIAIDKLDDLFEDKI--------EL-----------RDT-----IVAEPELGL 312 (441)
T ss_dssp SSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHTTTSS--------CG-----------GGG-----EEECCBCCS
T ss_pred CCccCceECC-CCCEEEEeCCcCCcEEEEEeehhhhHhhccC--------Cc-----------ceE-----EEeeccccc
Confidence 2699999999 776 67776 45666666321100111100 00 000 000000112
Q ss_pred CeeEEEEcCCCCEEEEeCCCCce
Q psy4832 429 SLTALAFSPTGDLYIADIDARKV 451 (770)
Q Consensus 429 ~P~giavd~~G~lyVaD~~~~ri 451 (770)
.|..-+||++|+.|.+-.....|
T Consensus 313 gplh~~fd~~g~~yts~~~ds~v 335 (441)
T d1qnia2 313 GPLHTTFDGRGNAYTTLFIDSQV 335 (441)
T ss_dssp CEEEEEECSSSEEEEEETTTTEE
T ss_pred CcccceecCCceEEEcccccceE
Confidence 47778999999999998877654
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.087 Score=52.42 Aligned_cols=225 Identities=15% Similarity=0.106 Sum_probs=116.3
Q ss_pred ceEEEEcCCCCEEEEeC-ceEEEEcCC-C-c--EEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCcc
Q psy4832 182 PVALTSGPDGSLYVGDF-NLVRRLTPE-G-N--VFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVA 256 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~-~~I~~i~~~-G-~--v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~ 256 (770)
..+|++.|+|.+.++-. +.|+.++.+ + . ....... ...-..-..++++| ++.+.++-..++.|..++..
T Consensus 54 V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~-~~h~~~I~~v~~s~-dg~~l~s~~~dg~i~iwd~~---- 127 (337)
T d1gxra_ 54 VCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDC-LNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLA---- 127 (337)
T ss_dssp CCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEEC-SCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECC----
T ss_pred EEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeee-cCCCCcEEEEEEcC-CCCEEEEeeccccccccccc----
Confidence 47789999998666544 467777633 1 1 1111110 11122357899998 66666665556777766421
Q ss_pred CCCCcEEE-EECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC-C-eEEECCC-CcEEEeecCCCCC
Q psy4832 257 DPSINWEV-AVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT-N-IRVVSPE-GIIHTLIGHHKHH 332 (770)
Q Consensus 257 ~~~g~~~~-vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~-~-Ir~id~~-G~i~t~~g~~~~~ 332 (770)
...+.... +.+. -..-..+++++++.+.++-.. . |+..+.. +.........
T Consensus 128 ~~~~~~~~~~~~~----------------------~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~--- 182 (337)
T d1gxra_ 128 APTPRIKAELTSS----------------------APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH--- 182 (337)
T ss_dssp CC--EEEEEEECS----------------------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC---
T ss_pred ccccccccccccc----------------------cccccccccccccccccccccccccccccccccccccccccc---
Confidence 11122111 1110 012346777888776655333 2 7777643 4333322111
Q ss_pred CCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe-CCEEEEEcC-CCcEEEEecCCCCCCCCCCCCccccccccc
Q psy4832 333 NIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID-DRVIFKLTN-DLKVKIVAGIPLHCRTGDKDKRDFKDKQSK 409 (770)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D-~~~I~~i~~-~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~ 409 (770)
-.....|++++ ++. ++++. .+.|+.++. +++.......
T Consensus 183 ------------------~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~-------------------- 223 (337)
T d1gxra_ 183 ------------------TDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDF-------------------- 223 (337)
T ss_dssp ------------------SSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEEC--------------------
T ss_pred ------------------ccccccccccc-cccccccccccccccccccccceeeccccc--------------------
Confidence 11345788888 655 44444 466777663 3432222110
Q ss_pred cccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCcccccC
Q psy4832 410 TKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKN 488 (770)
Q Consensus 410 ~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~ 488 (770)
-..+..|+++|++.++++-...+. |+..+. .+......+.
T Consensus 224 -----------------~~~i~~l~~~~~~~~l~~~~~d~~---i~i~d~~~~~~~~~~~~------------------- 264 (337)
T d1gxra_ 224 -----------------TSQIFSLGYCPTGEWLAVGMESSN---VEVLHVNKPDKYQLHLH------------------- 264 (337)
T ss_dssp -----------------SSCEEEEEECTTSSEEEEEETTSC---EEEEETTSSCEEEECCC-------------------
T ss_pred -----------------ccceEEEEEcccccccceeccccc---ccccccccccccccccc-------------------
Confidence 123688999999886665444443 455543 2222222110
Q ss_pred ccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEe
Q psy4832 489 SKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILA 526 (770)
Q Consensus 489 ~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~ 526 (770)
-....+|+++|+|.++++-..++.|+.
T Consensus 265 -----------~~~i~~v~~s~~g~~l~s~s~Dg~i~i 291 (337)
T d1gxra_ 265 -----------ESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp -----------SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred -----------ccccceEEECCCCCEEEEEeCCCeEEE
Confidence 123567899999987776544445443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.36 E-value=0.012 Score=59.09 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=22.8
Q ss_pred CCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcE
Q psy4832 428 GSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRM 463 (770)
Q Consensus 428 ~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i 463 (770)
..|.+++++++|. +|+++..... .+...+. ++++
T Consensus 106 ~~~~~~~~s~dg~~~~v~~~~~~~--~~~~~~~~~~~~ 141 (355)
T d2bbkh_ 106 TYPWMTSLTPDGKTLLFYQFSPAP--AVGVVDLEGKAF 141 (355)
T ss_dssp CCGGGEEECTTSSEEEEEECSSSC--EEEEEETTTTEE
T ss_pred CCCceEEEecCCCeeEEecCCCCc--eeeeeecCCCcE
Confidence 4688999999987 8888766543 3444443 4543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.19 E-value=0.12 Score=50.03 Aligned_cols=112 Identities=17% Similarity=0.126 Sum_probs=60.7
Q ss_pred cceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc
Q psy4832 222 SYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA 301 (770)
Q Consensus 222 ~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~ 301 (770)
..-..|+++| ++.+.++-..++.|+.++. .++........ ..-..-..|++.+
T Consensus 13 ~~V~~l~~s~-dg~~l~s~s~Dg~v~vWd~------~~~~~~~~~~~--------------------~h~~~v~~v~~~~ 65 (299)
T d1nr0a2 13 KAITALSSSA-DGKTLFSADAEGHINSWDI------STGISNRVFPD--------------------VHATMITGIKTTS 65 (299)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEET------TTCCEEECSSC--------------------SCSSCEEEEEECT
T ss_pred CCcEEEEECC-CCCEEEEEcCCCeEEEEEC------CCCcEEEEEcC--------------------CCCCcEEEEEeec
Confidence 3457899998 6776666656667776642 12332211100 0011235788999
Q ss_pred CCcEEEEeCCC-eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe-CCEEEEEc
Q psy4832 302 DKTMFIADGTN-IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID-DRVIFKLT 378 (770)
Q Consensus 302 ~G~lYvaD~~~-Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D-~~~I~~i~ 378 (770)
+|.++++.... |+.++..+.- ... ........-..+..+++.+ ++.+.++. .+.|..++
T Consensus 66 ~g~~~~~~~d~~v~~~~~~~~~-------~~~----------~~~~~~~~~~~~~~~~~s~-~g~~~~~~~~~~i~~~~ 126 (299)
T d1nr0a2 66 KGDLFTVSWDDHLKVVPAGGSG-------VDS----------SKAVANKLSSQPLGLAVSA-DGDIAVAACYKHIAIYS 126 (299)
T ss_dssp TSCEEEEETTTEEEEECSSSSS-------SCT----------TSCCEEECSSCEEEEEECT-TSSCEEEEESSEEEEEE
T ss_pred cceeecccceeeEEEeccCCcc-------ccc----------ccccccccccccccccccc-ccccccccccccccccc
Confidence 99988876655 7766643310 000 0000011123577899998 77765554 45565554
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=97.17 E-value=0.15 Score=51.06 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=33.5
Q ss_pred cceEEEccCCc-EEEEeCC------CeEEECC-CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-
Q psy4832 294 PKGLAIKADKT-MFIADGT------NIRVVSP-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD- 364 (770)
Q Consensus 294 P~gIavd~~G~-lYvaD~~------~Ir~id~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g- 364 (770)
...+++.|+|. +|++... .|+.+|. .|++...+..+ .+.+++++| +|
T Consensus 23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~-----------------------~~~~~a~Sp-DG~ 78 (373)
T d2madh_ 23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-----------------------FLPNPVAAH-SGS 78 (373)
T ss_pred ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC-----------------------CCccEEEcC-CCC
Confidence 46778888886 7887432 2778874 46554433221 223799999 66
Q ss_pred eEEEEe
Q psy4832 365 SLHFID 370 (770)
Q Consensus 365 ~lyv~D 370 (770)
.||++.
T Consensus 79 ~l~va~ 84 (373)
T d2madh_ 79 EFALAS 84 (373)
T ss_pred EEEEEe
Confidence 578875
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.18 E-value=0.19 Score=50.69 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.1
Q ss_pred CcceEEEeCCCCeEEEEe-CCEEEEEcC
Q psy4832 353 WPTGLALSPLDDSLHFID-DRVIFKLTN 379 (770)
Q Consensus 353 ~P~gla~d~~~g~lyv~D-~~~I~~i~~ 379 (770)
.+.|+++|...+.|||++ +-.|++++.
T Consensus 181 q~EGCVvDde~~~LyisEE~~Giw~~~a 208 (353)
T d1h6la_ 181 QTEGMAADDEYGSLYIAEEDEAIWKFSA 208 (353)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred ccceEEEeCCCCcEEEecCccceEEEEe
Confidence 478999998778999998 678999874
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.99 E-value=0.88 Score=45.05 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=40.7
Q ss_pred ceEEEEcCCCCEEEEeC-ceEEEEcC-CCcEEEEeccC---------------cccccceeEEEEeCCCCcEEEEeCCCc
Q psy4832 182 PVALTSGPDGSLYVGDF-NLVRRLTP-EGNVFTVLQLS---------------ATQVSYQYYLALSPADGHLYISDAEKH 244 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~-~~I~~i~~-~G~v~~~~~~~---------------~~~~~~p~~lav~p~~g~lyvsd~~~~ 244 (770)
-.+|+++|||.++++-. +.|+.++. +|+....+... ...-..-..|+++| ++.+.++-..++
T Consensus 65 V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~~~~l~s~~~dg 143 (388)
T d1erja_ 65 VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDR 143 (388)
T ss_dssp CCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEEEEEETTS
T ss_pred EEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECC-CCCcceeccccc
Confidence 36788999998766543 46666653 45554433211 01112246789997 677766666667
Q ss_pred EEEEEe
Q psy4832 245 QILRVL 250 (770)
Q Consensus 245 ~I~~i~ 250 (770)
.|+.++
T Consensus 144 ~v~i~~ 149 (388)
T d1erja_ 144 LIRIWD 149 (388)
T ss_dssp CEEEEE
T ss_pred cccccc
Confidence 777664
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.18 E-value=1.5 Score=42.39 Aligned_cols=63 Identities=13% Similarity=-0.015 Sum_probs=36.9
Q ss_pred CcceEEEccCCcEE-EEeCCCeEEECC-CCcE-EEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEE
Q psy4832 293 HPKGLAIKADKTMF-IADGTNIRVVSP-EGII-HTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFI 369 (770)
Q Consensus 293 ~P~gIavd~~G~lY-vaD~~~Ir~id~-~G~i-~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~ 369 (770)
.|.-|+++++|+.+ ++....|...+. ++.. ..+.+. -...+.++++| +|++.++
T Consensus 19 ~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H----------------------~~~v~~~~~sp-~g~~lat 75 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEH----------------------SHQTTVAKTSP-SGYYCAS 75 (311)
T ss_dssp CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCC----------------------SSCEEEEEECT-TSSEEEE
T ss_pred CeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCC----------------------CCCEEEEEEeC-CCCeEec
Confidence 46678999988744 443333655553 3333 333222 12357899999 8876655
Q ss_pred e--CCEEEEEc
Q psy4832 370 D--DRVIFKLT 378 (770)
Q Consensus 370 D--~~~I~~i~ 378 (770)
- .+.|+..+
T Consensus 76 g~~dg~i~iwd 86 (311)
T d1nr0a1 76 GDVHGNVRIWD 86 (311)
T ss_dssp EETTSEEEEEE
T ss_pred cccCceEeeee
Confidence 3 46666665
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.95 E-value=1.5 Score=41.06 Aligned_cols=64 Identities=14% Similarity=0.067 Sum_probs=39.1
Q ss_pred ceEEEEcCCCCEEEEeC--ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEE
Q psy4832 182 PVALTSGPDGSLYVGDF--NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRV 249 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~--~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i 249 (770)
-.+|++.|+|+++++-. +.|+.++. +|+....+. ..-.....++++| ++.+.++......+...
T Consensus 20 I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~---~h~~~V~~~~~~~-~~~~~~~~~~~~~~~~~ 86 (317)
T d1vyhc1 20 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK---GHTDSVQDISFDH-SGKLLASCSADMTIKLW 86 (317)
T ss_dssp EEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC---CCSSCEEEEEECT-TSSEEEEEETTSCCCEE
T ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEe---CCCCcEEEEeeec-ccccccccccccccccc
Confidence 46788999998776533 47777763 466554442 1223457889997 66665555444444444
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=94.15 E-value=2.7 Score=40.48 Aligned_cols=127 Identities=12% Similarity=0.030 Sum_probs=66.6
Q ss_pred EcC-CCCEEEEeC-ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCC-cEEEEEeccCCccCCCCcEE
Q psy4832 187 SGP-DGSLYVGDF-NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEK-HQILRVLSLESVADPSINWE 263 (770)
Q Consensus 187 ~~~-dG~lyv~d~-~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~-~~I~~i~~~~~~~~~~g~~~ 263 (770)
+.| ||.++.... +.|+.++.++....-++ .-.....++++|.+..|+++.... +.|+.++. ..+...
T Consensus 10 fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~----~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~------~~~~~~ 79 (360)
T d1k32a3 10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP----EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY------RTGKAE 79 (360)
T ss_dssp EEECGGGCEEEEETTEEEEECTTSSBEEECS----CCSCEEEEEECSSSEEEEEEEETTEEEEEEEET------TTCCEE
T ss_pred ccCCCCCEEEEEECCeEEEEECCCCcEEEcc----CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEEC------CCCcEE
Confidence 445 665544333 46666665543332222 223467899998444565554444 34555532 223333
Q ss_pred EEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEE-eCCC-eEEECCC-CcEEEeecCCCCCCCcCCCcc
Q psy4832 264 VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIA-DGTN-IRVVSPE-GIIHTLIGHHKHHNIWSPFNC 340 (770)
Q Consensus 264 ~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYva-D~~~-Ir~id~~-G~i~t~~g~~~~~~~~~p~~~ 340 (770)
.+.+ .......++++++|...++ ...+ ++.++.+ +....+....
T Consensus 80 ~~~~----------------------~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 126 (360)
T d1k32a3 80 KFEE----------------------NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR----------- 126 (360)
T ss_dssp ECCC----------------------CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-----------
T ss_pred EeeC----------------------CCceEEeeeecccccccceeccccccccccccccceeeeeecc-----------
Confidence 2221 1123568999999984444 4444 7777654 4444333221
Q ss_pred CCCcccccccccCcceEEEeCCCCeEE
Q psy4832 341 HRSFPASTAQLQWPTGLALSPLDDSLH 367 (770)
Q Consensus 341 ~~~~~~~~~~l~~P~gla~d~~~g~ly 367 (770)
......++++| +|..+
T Consensus 127 ----------~~~~~~~~~sp-dg~~l 142 (360)
T d1k32a3 127 ----------EAMITDFTISD-NSRFI 142 (360)
T ss_dssp ----------SSCCCCEEECT-TSCEE
T ss_pred ----------cccccchhhcc-ceeee
Confidence 12345789998 77643
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=93.78 E-value=3.1 Score=39.96 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=21.2
Q ss_pred CeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCcE
Q psy4832 429 SLTALAFSPTGDLYIADIDARKVNALRVIDS-TGRM 463 (770)
Q Consensus 429 ~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~i 463 (770)
....++++|+|..+++-...+. ++..+. .+..
T Consensus 87 ~v~~~~~spdg~~l~~~~~~~~---~~~~~~~~~~~ 119 (360)
T d1k32a3 87 NVFAMGVDRNGKFAVVANDRFE---IMTVDLETGKP 119 (360)
T ss_dssp SEEEEEECTTSSEEEEEETTSE---EEEEETTTCCE
T ss_pred eEEeeeecccccccceeccccc---cccccccccce
Confidence 3688999999997776666554 455554 3443
|
| >d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Tachylectin-2 family: Tachylectin-2 domain: Tachylectin-2 species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
Probab=93.70 E-value=0.47 Score=42.53 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=43.7
Q ss_pred ccCcceEEEccCCcEEEEeCCCeEEECCC---C----cEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCC
Q psy4832 291 LSHPKGLAIKADKTMFIADGTNIRVVSPE---G----IIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLD 363 (770)
Q Consensus 291 l~~P~gIavd~~G~lYvaD~~~Ir~id~~---G----~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~ 363 (770)
+.+-+-|+++|+|+||..-.+++++=.+. . ...+.+|.+. | +.-.-|.+|| .
T Consensus 39 ~~n~~~i~fsP~G~LyaVr~~~lY~Gp~~s~~nq~wf~~atrIG~gg----W----------------n~FkflffdP-~ 97 (235)
T d1tl2a_ 39 WSNFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKKIGNGG----W----------------NQFQFLFFDP-N 97 (235)
T ss_dssp CTTCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEEEECSC----G----------------GGCSEEEECT-T
T ss_pred ccceeEEEECCCCcEEEEECCeEEECCCCCcchHHHHHhhhhcccCc----c----------------cceEEEEECC-C
Confidence 44556799999999998877777654321 1 1123344332 1 1234588999 9
Q ss_pred CeEEEEeCCEEEEEc
Q psy4832 364 DSLHFIDDRVIFKLT 378 (770)
Q Consensus 364 g~lyv~D~~~I~~i~ 378 (770)
|-||++..+.++|=.
T Consensus 98 G~LyaVt~~~LYr~~ 112 (235)
T d1tl2a_ 98 GYLYAVSKDKLYKAS 112 (235)
T ss_dssp SCEEEEETTEEEEES
T ss_pred ceEEEecCcceecCC
Confidence 999988777888865
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.42 E-value=3.4 Score=39.18 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=41.3
Q ss_pred ceEEEEcCCCCEEEEe-C-ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGPDGSLYVGD-F-NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~dG~lyv~d-~-~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
-.+|++.|+|.++++- . +.|+.++. +++....+.. .-.....++++| ++.+.++-...+.|....
T Consensus 58 I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~---~~~~v~~v~~~~-~~~~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL---RSSWVMTCAYAP-SGNYVACGGLDNICSIYN 125 (340)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEEC---SCSCEEEEEECT-TSSEEEEEETTCCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCceeeeecccceeEEEEec---ccccEEeeEeec-cceeeeeecccceeeccc
Confidence 4678999999866654 3 57888875 4665555432 223457899998 565555555555665553
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.63 E-value=3.9 Score=37.86 Aligned_cols=59 Identities=8% Similarity=-0.015 Sum_probs=34.8
Q ss_pred CCeEEEEEEccCCcEeEEEecCcEEEEEeCCCCCeEEEEcCCCCEEEEEEeCCCCceEE
Q psy4832 692 YGKLISLVYDERGFLIFAQMFRHKYYIATDQCGTPVMVFNQYGETVREIMRSPYGHIVY 750 (770)
Q Consensus 692 ~g~~~~~~yd~~G~l~~~~~~~~~~~~~~d~~G~~~~~~d~~G~~v~~~~yd~~G~~~~ 750 (770)
.+......+.+.|++++.-..+....+.-=..+.++..+......|..+...+.|+.+.
T Consensus 247 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~ 305 (317)
T d1vyhc1 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 305 (317)
T ss_dssp SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 44566667777777665554444433322235666666666555567777777777553
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.61 E-value=5.2 Score=39.19 Aligned_cols=25 Identities=12% Similarity=0.045 Sum_probs=17.7
Q ss_pred ceEEEeCCCCeEEEEe--CCEEEEEcCC
Q psy4832 355 TGLALSPLDDSLHFID--DRVIFKLTND 380 (770)
Q Consensus 355 ~gla~d~~~g~lyv~D--~~~I~~i~~~ 380 (770)
+.++++| +|+++++- ++.|+..+.+
T Consensus 11 t~~~~s~-dg~~la~~~~~~~i~iw~~~ 37 (371)
T d1k8kc_ 11 SCHAWNK-DRTQIAICPNNHEVHIYEKS 37 (371)
T ss_dssp CEEEECT-TSSEEEEECSSSEEEEEEEE
T ss_pred EEEEECC-CCCEEEEEeCCCEEEEEECC
Confidence 7899999 88766543 4667777643
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.13 E-value=5.4 Score=38.29 Aligned_cols=67 Identities=16% Similarity=0.105 Sum_probs=37.8
Q ss_pred cCceEEEEcCCCCEEE-EeCc--eEEEEcCC-Cc---EEEEeccCcccccceeEEEEeCC-CCcEEEEeCCCcEEEEE
Q psy4832 180 LTPVALTSGPDGSLYV-GDFN--LVRRLTPE-GN---VFTVLQLSATQVSYQYYLALSPA-DGHLYISDAEKHQILRV 249 (770)
Q Consensus 180 ~~P~~la~~~dG~lyv-~d~~--~I~~i~~~-G~---v~~~~~~~~~~~~~p~~lav~p~-~g~lyvsd~~~~~I~~i 249 (770)
..|..|+++|+|+.++ +..+ .|+.++.. .+ +..+.+ ..-.....++++|. ++.++++-..++.|+.+
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~g---h~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iW 92 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG---HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 92 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECT---TTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeC---CCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEe
Confidence 3578899999998665 3333 35555532 21 223222 11223578999874 45566665556666554
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=92.02 E-value=3.3 Score=41.04 Aligned_cols=122 Identities=15% Similarity=0.121 Sum_probs=67.5
Q ss_pred ccccCceEEEE--cC-CCCEEE--EeC-ceEE--EEc--CCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEE
Q psy4832 177 ARLLTPVALTS--GP-DGSLYV--GDF-NLVR--RLT--PEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQI 246 (770)
Q Consensus 177 ~~l~~P~~la~--~~-dG~lyv--~d~-~~I~--~i~--~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I 246 (770)
..+..|.++|+ ++ +|.+|+ ++. +++. ++. .+|.+....-..-.....+.|+++|+..+.|||++.+ ..|
T Consensus 125 ~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~-~Gi 203 (353)
T d1h6la_ 125 SAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEED-EAI 203 (353)
T ss_dssp CSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETT-TEE
T ss_pred cccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCc-cce
Confidence 34556889998 65 576654 343 3433 343 4455432111001123457899999988999999875 589
Q ss_pred EEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEc----cCCcEEEEeCCC--eEEECCC
Q psy4832 247 LRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK----ADKTMFIADGTN--IRVVSPE 319 (770)
Q Consensus 247 ~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd----~~G~lYvaD~~~--Ir~id~~ 319 (770)
|++..... .... ...+...... .-...|.||++- .+|.|.+++.++ ...++..
T Consensus 204 w~~~a~~~--~~~~-~~~i~~~~g~-----------------~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~ 262 (353)
T d1h6la_ 204 WKFSAEPD--GGSN-GTVIDRADGR-----------------HLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQ 262 (353)
T ss_dssp EEEESSTT--SCSC-CEEEEECSSS-----------------SCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEEeccC--CCcc-ceeeecccCc-----------------cccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecC
Confidence 99965321 1111 1122111000 012358999984 356688887665 5555543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=91.94 E-value=1.2 Score=45.31 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=21.9
Q ss_pred CCeeEEEEcCCCc-EEEEcCCCceEEeeec
Q psy4832 501 TSISALSVSPDGV-VNVADQGSLHILALQH 529 (770)
Q Consensus 501 ~~P~giav~~dG~-lyvaD~~~~~I~~i~~ 529 (770)
++|+|+.++|||. +|++..-...+..++-
T Consensus 275 KsPHGV~vSPDGKyi~VaGKLs~tVSViD~ 304 (459)
T d1fwxa2 275 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDV 304 (459)
T ss_dssp SSCCCEEECTTSSEEEEECTTSSBEEEEEG
T ss_pred CCCCceEECCCCCEEEEeCCcCCcEEEEEe
Confidence 6799999999995 6777766666665543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.77 E-value=5.4 Score=37.55 Aligned_cols=113 Identities=8% Similarity=-0.039 Sum_probs=65.6
Q ss_pred cCceEEEEEec-CCceEEEEEeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEEEe-CCCCeEEEEEEccCCcEeEEEec
Q psy4832 635 TNDLKIRALKK-GRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYS-PRYGKLISLVYDERGFLIFAQMF 712 (770)
Q Consensus 635 ~~g~l~~~~~~-~g~~~~y~YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~~~-p~~g~~~~~~yd~~G~l~~~~~~ 712 (770)
..+.++..... .+....-.+.+.|+++..-..+|.+.-|..... . .+..... ..........+.+.|+++..-..
T Consensus 214 ~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~--~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~ 290 (340)
T d1tbga_ 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD--Q-ELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290 (340)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--E-EEEEECCTTCCSCEEEEEECSSSCEEEEEET
T ss_pred CCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc--c-cccccccccccCceEEEEECCCCCEEEEEEC
Confidence 34555554443 233334456777888777777775554443322 1 2221111 11345778888988887777655
Q ss_pred CcEEEEEeCCCCCeEEEEcCCCCEEEEEEeCCCCceEE
Q psy4832 713 RHKYYIATDQCGTPVMVFNQYGETVREIMRSPYGHIVY 750 (770)
Q Consensus 713 ~~~~~~~~d~~G~~~~~~d~~G~~v~~~~yd~~G~~~~ 750 (770)
+...++.-=..|.++..+......|..+...|.|+.+.
T Consensus 291 dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~ 328 (340)
T d1tbga_ 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328 (340)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred CCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE
Confidence 44443332246777777776555677788888887663
|
| >d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Tachylectin-2 family: Tachylectin-2 domain: Tachylectin-2 species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
Probab=90.09 E-value=5.2 Score=35.59 Aligned_cols=151 Identities=19% Similarity=0.153 Sum_probs=89.7
Q ss_pred cccCceEEEEcCCCCEEEEeCceEEEEcCCCc-------EEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 178 RLLTPVALTSGPDGSLYVGDFNLVRRLTPEGN-------VFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 178 ~l~~P~~la~~~dG~lyv~d~~~I~~i~~~G~-------v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
.+.+-.-|++.|+|.||..-.+.+.+=.+... ..+.+| ......=.-|-||| .|.||.... ..++|=.
T Consensus 38 g~~n~~~i~fsP~G~LyaVr~~~lY~Gp~~s~~nq~wf~~atrIG--~ggWn~FkflffdP-~G~LyaVt~--~~LYr~~ 112 (235)
T d1tl2a_ 38 GWSNFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKKIG--NGGWNQFQFLFFDP-NGYLYAVSK--DKLYKAS 112 (235)
T ss_dssp SCTTCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEEEE--CSCGGGCSEEEECT-TSCEEEEET--TEEEEES
T ss_pred cccceeEEEECCCCcEEEEECCeEEECCCCCcchHHHHHhhhhcc--cCcccceEEEEECC-CceEEEecC--cceecCC
Confidence 46677889999999999887666665543211 112333 22333345688998 999998874 5888764
Q ss_pred ccCCccCCC---CcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCCeEEECC-CCc-----
Q psy4832 251 SLESVADPS---INWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTNIRVVSP-EGI----- 321 (770)
Q Consensus 251 ~~~~~~~~~---g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~Ir~id~-~G~----- 321 (770)
.-+. +.+ +.... +|.+. -+.=.-|.+||+|.||-....+|.|-.+ .+.
T Consensus 113 pPtn--~~q~W~g~a~~-vG~~g--------------------w~df~~lFFdP~G~LYaV~~~~l~k~~pP~~~~d~WL 169 (235)
T d1tl2a_ 113 PPQS--DTDNWIARATE-VGSGG--------------------WSGFKFLFFHPNGYLYAVHGQQFYKALPPVSNQDNWL 169 (235)
T ss_dssp CCCS--TTCCHHHHSEE-EECSS--------------------GGGEEEEEECTTSCEEEEETTEEEEECCCSSTTCCHH
T ss_pred cCcc--cchhhhhhhhh-hccCC--------------------cCceeEEEECCCceEEEEECCcEEEcCCCCCCCchhh
Confidence 3211 001 11112 33221 1123478999999999876556555432 221
Q ss_pred -EEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeCCEEEEE
Q psy4832 322 -IHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFKL 377 (770)
Q Consensus 322 -i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~~~I~~i 377 (770)
..|.+|.+ .-..++.|.+.| +|+|+.+-++.+++=
T Consensus 170 ~~st~igr~--------------------~w~~~~fi~Fs~-dG~L~~v~~g~~Y~~ 205 (235)
T d1tl2a_ 170 ARATKIGQG--------------------GWDTFKFLFFSS-VGTLFGVQGGKFYED 205 (235)
T ss_dssp HHCEEEESS--------------------SGGGEEEEEECT-TSCEEEEETTEEEEE
T ss_pred hhhhhhccC--------------------cccCceEEEECC-CCcEEEEeCCeEEec
Confidence 12223322 123567999999 999998876666663
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=90.05 E-value=6.7 Score=39.64 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=36.6
Q ss_pred CCC-EEEEeC--ceEEEEcCCC-cEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcE
Q psy4832 190 DGS-LYVGDF--NLVRRLTPEG-NVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQ 245 (770)
Q Consensus 190 dG~-lyv~d~--~~I~~i~~~G-~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~ 245 (770)
||. |||.|. +||-||+.+- ++..++.. .....+.++.+.+.....||......+
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~i--Pn~~~~HG~r~~~~p~T~YV~~~~e~~ 155 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEI--PNAKGIHGLRPQKWPRSNYVFCNGEDE 155 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEEC--SSCCSEEEEEECCSSBCSEEEEEECSC
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEec--CCCCCCceeecccCCCeEEEEccCccc
Confidence 665 888887 4999999774 44455543 345678888887655677877644333
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=88.03 E-value=9.7 Score=34.86 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=14.4
Q ss_pred EEEcCCCcEEEEcCCCceEEeee
Q psy4832 506 LSVSPDGVVNVADQGSLHILALQ 528 (770)
Q Consensus 506 iav~~dG~lyvaD~~~~~I~~i~ 528 (770)
|++..+|.||+.|..++.+++|.
T Consensus 247 I~f~~~~~l~~~d~~~g~~~~i~ 269 (281)
T d1k32a2 247 ILFSKGGSIYIFNPDTEKIEKIE 269 (281)
T ss_dssp EEEEETTEEEEECTTTCCEEECC
T ss_pred EEEEeCCEEEEEECCCCCEEEec
Confidence 55555666777776666666553
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.83 E-value=7.2 Score=38.43 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=43.9
Q ss_pred CeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCcE-EEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEE
Q psy4832 429 SLTALAFSPTGDLYIADIDARKVNALRVIDS-TGRM-FDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISAL 506 (770)
Q Consensus 429 ~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~i-~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~gi 506 (770)
....|+++|+|.++++-...+.+..|+..|. .|.. .++....... .......+.-....+|
T Consensus 233 ~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~-----------------~~~~~~~gH~~~V~~l 295 (393)
T d1sq9a_ 233 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS-----------------QASLGEFAHSSWVMSL 295 (393)
T ss_dssp CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-------------------------CCBSBSSCEEEE
T ss_pred eEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccc-----------------cceeeeecccCceeee
Confidence 3688999999998887665443344666664 4443 2332111000 0000011112346789
Q ss_pred EEcCCCcEEEEcCCCceEE
Q psy4832 507 SVSPDGVVNVADQGSLHIL 525 (770)
Q Consensus 507 av~~dG~lyvaD~~~~~I~ 525 (770)
+++|||.++++-...+.|+
T Consensus 296 ~fspd~~~l~S~s~D~~v~ 314 (393)
T d1sq9a_ 296 SFNDSGETLCSAGWDGKLR 314 (393)
T ss_dssp EECSSSSEEEEEETTSEEE
T ss_pred ccCCCCCeeEEECCCCEEE
Confidence 9999998888765555554
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.43 E-value=22 Score=33.96 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=14.0
Q ss_pred eeEEEEcCCCCEEEEeC
Q psy4832 430 LTALAFSPTGDLYIADI 446 (770)
Q Consensus 430 P~giavd~~G~lyVaD~ 446 (770)
...|+++|+|.++++-.
T Consensus 65 V~~l~fs~dg~~lasg~ 81 (388)
T d1erja_ 65 VCCVKFSNDGEYLATGC 81 (388)
T ss_dssp CCEEEECTTSSEEEEEC
T ss_pred EEEEEECCCCCEEEEEe
Confidence 58899999999877754
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