Psyllid ID: psy4836

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
MDDRRVADYFVVCGLPDDQAEWEEETSEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDVIKSTPTGT
Secondary Structure (PSIPRED)
cccccEEcEEEEEcccccccccHHHHHcccccccccccccccEEEEEEcccccccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEEcccccccccccHcccccccccccccccccHHEEEEcccccccccccEEEEEccccc
Coil and Loop (DISEMBL)
MDDRRVADYFVVcglpddqaeweeetsehshyksnhndapitdlavifptlgefvpdgydvikstptgt
Flexible Loop (DISEMBL)
mddrrvadyfvVCGLPDDQAEWEEETSEHShyksnhndapITDLAVIFPTLgefvpdgydvikstptgt
Low Complexity Region (SEG)
MDDRRVADYFVVCGLPDDQAEWEEETSEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDVIKSTPTGT
Disordered region (IsUnstruct)
*****VADYFVVCGLP***********************PITDLAVIFPTLGEFVPDGYDVI*******
Disordered Region (DISOPRED)
**DRRVADYFVVCGLPDDQA********************ITDLAVIFPTLGEFVPDGYDVIKSTP***
Disordered Region (DISEMBL)
MDDRRVADYFVVCGLPDDQ***************NHNDAPITDLAVIFPTLGEFVPDGYDVIKSTPTGT
Disordered Region (DISPRO)
**DRRVADYFVVCGLPDDQAEWEE*TSEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDVIKST****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDRRVADYFVVCGLPDDQAEWEEETSEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDVIKSTPTGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	69	2.2.26 [Sep-21-2011]
Q7Z401	1863	C-myc promoter-binding pr	yes	N/A	0.927	0.034	0.492	4e-07
A6H8H2	1906	DENN domain-containing pr	no	N/A	0.913	0.033	0.437	6e-07
O75064	1496	DENN domain-containing pr	no	N/A	0.927	0.042	0.417	0.0001
Q3U1Y4	1499	DENN domain-containing pr	no	N/A	0.927	0.042	0.402	0.0005

>sp|Q7Z401|MYCPP_HUMAN C-myc promoter-binding protein OS=Homo sapiens GN=DENND4A PE=1 SV=2

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 5  RVADYFVVCGLPDDQAEWEEETS-EHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDVIK 63
          RVADYFVV GL D     EEE     + +K      PITD++VI  +LGE VP  Y  I 
Sbjct: 8  RVADYFVVAGLTDVSKPLEEEIHFNDACHKVAKPKEPITDVSVIIKSLGEEVPQDYICID 67

Query: 64 STPTG 68
           TPTG
Sbjct: 68 VTPTG 72

Binds to ISRE-like element (interferon-stimulated response element) of MYC P2 promoter.
Homo sapiens (taxid: 9606)

>sp|A6H8H2|DEN4C_MOUSE DENN domain-containing protein 4C OS=Mus musculus GN=Dennd4c PE=1 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 5  RVADYFVVCGLPDDQAEWEEETSEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDVIKS 64
          RV DYFVV GL D     ++E +  +   S    APITD+AVI  + GE VP+GY  +++
Sbjct: 8  RVTDYFVVAGLTDTSTLLDQEINR-TDTNSIGPKAPITDIAVIIKSAGETVPEGYTCVEA 66

Query: 65 TPTG 68
          TP+ 
Sbjct: 67 TPSA 70

Guanine nucleotide exchange factor (GEF) activating RAB10. Promotes the exchange of GDP to GTP, converting inactive GDP-bound RAB10 into its active GTP-bound form. Thereby, stimulates SLC2A4/GLUT4 glucose transporter-enriched vesicles delivery to the plasma membrane in response to insulin.

Mus musculus (taxid: 10090)

>sp|O75064|DEN4B_HUMAN DENN domain-containing protein 4B OS=Homo sapiens GN=DENND4B PE=1 SV=4

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 5  RVADYFVVCGLPDDQAEWEEET---SEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDV 61
          R+ DYFVV GL  + A   EET         +      PITD+AVI   LGE VP GY  
Sbjct: 8  RLVDYFVVAGLAGNGAPIPEETWVPEPSGPLRPPRPAEPITDVAVIARALGEEVPQGYTC 67

Query: 62 IKSTPTG 68
          I+++  G
Sbjct: 68 IQASAGG 74

Homo sapiens (taxid: 9606)

>sp|Q3U1Y4|DEN4B_MOUSE DENN domain-containing protein 4B OS=Mus musculus GN=Dennd4b PE=2 SV=2

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 5  RVADYFVVCGLPDDQAEWEEET---SEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDV 61
          R+ DYFVV GL  + A   EE          +      PITD+AVI   LGE VP GY  
Sbjct: 8  RLVDYFVVAGLAGNGAPIPEEKWVPEPTGPLRPPRPAEPITDVAVIARALGEEVPQGYTC 67

Query: 62 IKSTPTG 68
          I+++  G
Sbjct: 68 IQTSAGG 74

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
322789311	1525	hypothetical protein SINV_00265 [Solenop	0.985	0.044	0.538	2e-13
91077310	1578	PREDICTED: similar to AGAP001102-PA [Tri	0.985	0.043	0.565	3e-13
332019226	1600	C-myc promoter-binding protein [Acromyrm	0.985	0.042	0.512	3e-12
357626822	1590	hypothetical protein KGM_00107 [Danaus p	0.956	0.041	0.544	5e-12
307178492	1605	C-myc promoter-binding protein [Camponot	0.985	0.042	0.468	6e-12
242005748	2004	conserved hypothetical protein [Pediculu	0.956	0.032	0.522	9e-12
328702250	1675	PREDICTED: c-myc promoter-binding protei	0.971	0.04	0.5	6e-11
328702248	1705	PREDICTED: c-myc promoter-binding protei	0.971	0.039	0.5	6e-11
170061053	1661	CRAG protein [Culex quinquefasciatus] gi	0.985	0.040	0.478	1e-10
383855089	1590	PREDICTED: LOW QUALITY PROTEIN: C-myc pr	0.985	0.042	0.448	2e-10

>gi|322789311|gb|EFZ14623.1| hypothetical protein SINV_00265 [Solenopsis invicta]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/78 (53%), Positives = 51/78 (65%), Gaps = 10/78 (12%)

Query: 1  MDDRRVADYFVVCGLP--DDQAEWEEETS--------EHSHYKSNHNDAPITDLAVIFPT 50
          MDDRRVADYFV+ GLP  DD+   + ET+        E +H K  H   PITDLAVIFPT
Sbjct: 1  MDDRRVADYFVIAGLPGQDDELSEDNETNNKLEDWYQEGTHLKDMHMPPPITDLAVIFPT 60

Query: 51 LGEFVPDGYDVIKSTPTG 68
          LGE  P+GY +++ T TG
Sbjct: 61 LGEHCPEGYTLLECTVTG 78

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91077310|ref|XP_974618.1| PREDICTED: similar to AGAP001102-PA [Tribolium castaneum] gi|270001673|gb|EEZ98120.1| hypothetical protein TcasGA2_TC000538 [Tribolium castaneum]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 50/69 (72%), Gaps = 1/69 (1%)

Query: 1  MDDRRVADYFVVCGLPDDQAEWEEET-SEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGY 59
          MD++RVADYFVV GLPDD    +E T SE  + K++H  APITD++VIFP LGE  P G+
Sbjct: 1  MDEKRVADYFVVAGLPDDPEPLDETTLSEGGNLKASHGQAPITDISVIFPGLGEKPPPGW 60

Query: 60 DVIKSTPTG 68
           V+  TP+G
Sbjct: 61 CVVMKTPSG 69

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019226|gb|EGI59736.1| C-myc promoter-binding protein [Acromyrmex echinatior]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 10/78 (12%)

Query: 1  MDDRRVADYFVVCGLP--DDQAEWEEETS--------EHSHYKSNHNDAPITDLAVIFPT 50
          MDDRRVADYFV+ GLP  DD+   + ET+        E +H K  H   PITDLAVIFP 
Sbjct: 1  MDDRRVADYFVIAGLPGQDDELSEDNETNDKLEAWCQEGTHLKDMHMPPPITDLAVIFPA 60

Query: 51 LGEFVPDGYDVIKSTPTG 68
          LGE  P+GY +++ T +G
Sbjct: 61 LGEHCPEGYTLLEYTVSG 78

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357626822|gb|EHJ76747.1| hypothetical protein KGM_00107 [Danaus plexippus]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 48/68 (70%), Gaps = 2/68 (2%)

Query: 1  MDDRRVADYFVVCGLPDDQAEWEEETSEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYD 60
          MD+RRVADYFVV GLP+     ++  S+  H K     APITD+ V+FP LGE VPDGY+
Sbjct: 1  MDERRVADYFVVAGLPEVPEILDD--SDSGHLKGYSTRAPITDIGVMFPGLGEKVPDGYE 58

Query: 61 VIKSTPTG 68
          +++ TPTG
Sbjct: 59 MLELTPTG 66

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178492|gb|EFN67181.1| C-myc promoter-binding protein [Camponotus floridanus]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 11/79 (13%)

Query: 1  MDDRRVADYFVVCGLPDDQAEW-----------EEETSEHSHYKSNHNDAPITDLAVIFP 49
          MD+RRVADYFV+ GLP    E+           E+   E +H K  H   PITDLAVIFP
Sbjct: 1  MDERRVADYFVIAGLPGQDNEFNKDNNDTNDKLEDWCQEGTHLKDMHMPPPITDLAVIFP 60

Query: 50 TLGEFVPDGYDVIKSTPTG 68
           LGE+ P+GY +++ T +G
Sbjct: 61 ALGEYCPEGYTLLEQTVSG 79

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005748|ref|XP_002423724.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212506909|gb|EEB10986.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 48/67 (71%), Gaps = 1/67 (1%)

Query: 2  DDRRVADYFVVCGLPDDQAEWEEETSEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDV 61
          ++ +VADYFVV GLPDD    ++ T + +H K N + APITD+ VIFP+LGE  P+G+ V
Sbjct: 3  EESQVADYFVVAGLPDDPKPMDDYT-DGTHLKQNQSLAPITDITVIFPSLGEICPEGWQV 61

Query: 62 IKSTPTG 68
          +  TPTG
Sbjct: 62 LDHTPTG 68

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328702250|ref|XP_003241852.1| PREDICTED: c-myc promoter-binding protein-like isoform 2 [Acyrthosiphon pisum]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 1/68 (1%)

Query: 1  MDDRRVADYFVVCGLPDDQAEWEEETSEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYD 60
          M++RRV DYFVV G  D+Q++ ++  S H       +  PITDLA++FP+LGE VP GY 
Sbjct: 1  MEERRVVDYFVVVGASDEQSQ-DDSNSTHLKQSLCSDLPPITDLAIVFPSLGEKVPPGYT 59

Query: 61 VIKSTPTG 68
          +I++TPTG
Sbjct: 60 LIETTPTG 67

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328702248|ref|XP_001944872.2| PREDICTED: c-myc promoter-binding protein-like isoform 1 [Acyrthosiphon pisum]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 1/68 (1%)

Query: 1  MDDRRVADYFVVCGLPDDQAEWEEETSEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYD 60
          M++RRV DYFVV G  D+Q++ ++  S H       +  PITDLA++FP+LGE VP GY 
Sbjct: 1  MEERRVVDYFVVVGASDEQSQ-DDSNSTHLKQSLCSDLPPITDLAIVFPSLGEKVPPGYT 59

Query: 61 VIKSTPTG 68
          +I++TPTG
Sbjct: 60 LIETTPTG 67

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170061053|ref|XP_001866071.1| CRAG protein [Culex quinquefasciatus] gi|167879322|gb|EDS42705.1| CRAG protein [Culex quinquefasciatus]

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/69 (47%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 1  MDDRRVADYFVVCGLPDDQAEWEEET-SEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGY 59
          MD+RRVADYFVV G+P++    +E   ++ SH +S     PITD+ V FP+LGE +P  Y
Sbjct: 1  MDERRVADYFVVAGMPENPKLLKENIFNDSSHLRSAVTIDPITDIGVFFPSLGEKIPADY 60

Query: 60 DVIKSTPTG 68
          +V+++TP+G
Sbjct: 61 EVLENTPSG 69

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855089|ref|XP_003703051.1| PREDICTED: LOW QUALITY PROTEIN: C-myc promoter-binding protein-like [Megachile rotundata]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 10/78 (12%)

Query: 1  MDDRRVADYFVVCGLP----------DDQAEWEEETSEHSHYKSNHNDAPITDLAVIFPT 50
          MD+RRVADYFV+ GLP          ++  + E+   E +H K  H   PITDLA+IFP 
Sbjct: 1  MDERRVADYFVIAGLPGQDNDFASNNENDEKLEDWYQEGTHVKDVHMKPPITDLAIIFPA 60

Query: 51 LGEFVPDGYDVIKSTPTG 68
          LGE  P+GY +++ T +G
Sbjct: 61 LGEQCPEGYTLLEHTVSG 78

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
FB|FBgn0025864	1671	Crag "Calmodulin-binding prote	0.985	0.040	0.434	1.7e-10
WB|WBGene00018681	1635	F52C12.4 [Caenorhabditis elega	0.971	0.040	0.485	7.3e-10
UNIPROTKB|F1N032	1956	F1N032 "Uncharacterized protei	0.913	0.032	0.468	1.2e-07
MGI|MGI:1914769	1906	Dennd4c "DENN/MADD domain cont	0.898	0.032	0.444	8.2e-07
UNIPROTKB|Q7Z401	1863	DENND4A "C-myc promoter-bindin	0.927	0.034	0.492	1e-06
UNIPROTKB|F1SNF8	1905	DENND4C "Uncharacterized prote	0.898	0.032	0.460	1e-06
UNIPROTKB|F1SFW6	1496	DENND4B "Uncharacterized prote	0.927	0.042	0.462	6.6e-05
UNIPROTKB|F1PSN6	1494	DENND4B "Uncharacterized prote	0.927	0.042	0.462	8.4e-05
UNIPROTKB|O75064	1496	DENND4B "DENN domain-containin	0.927	0.042	0.462	0.00018
RGD|1560320	1512	Dennd4b "DENN/MADD domain cont	0.927	0.042	0.417	0.00029

FB|FBgn0025864 Crag "Calmodulin-binding protein related to a Rab3 GDP/GTP exchange protein" [Drosophila melanogaster (taxid:7227)]

 Score = 163 (62.4 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 30/69 (43%), Positives = 46/69 (66%)

Query:     1 MDDRRVADYFVVCGLPDD-QAEWEEETSEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGY 59
             M+++R+ADYFVV G+P++ Q   E   ++    ++     PITD+ V FP LGE VP+GY
Sbjct:     1 MEEKRIADYFVVAGMPENPQLLQENSFNDSGRLRAATTIEPITDIGVYFPLLGEEVPEGY 60

Query:    60 DVIKSTPTG 68
             +++  TPTG
Sbjct:    61 EILSHTPTG 69

GO:0005516 "calmodulin binding" evidence=IPI

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS;NAS

GO:0008105 "asymmetric protein localization" evidence=IMP

GO:0005938 "cell cortex" evidence=IDA

GO:0070831 "basement membrane assembly" evidence=IMP

GO:0055037 "recycling endosome" evidence=IDA

WB|WBGene00018681 F52C12.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 157 (60.3 bits), Expect = 7.3e-10, P = 7.3e-10
 Identities = 33/68 (48%), Positives = 48/68 (70%)

Query:     2 DDRRVADYFVVCGLPDDQA-EWEEETSEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYD 60
             D+RR+ ++FV+ GL ++Q  E  + +SE    ++    APITD+AVIFP+LGE  PDG+D
Sbjct:    32 DERRLFEHFVIAGLAENQPLERLKPSSEECGLRNTQPLAPITDIAVIFPSLGEKPPDGFD 91

Query:    61 VIKSTPTG 68
             VI+ST  G
Sbjct:    92 VIESTTLG 99

GO:0040013 "negative regulation of locomotion" evidence=IMP

UNIPROTKB|F1N032 F1N032 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 137 (53.3 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 30/64 (46%), Positives = 40/64 (62%)

Query:     5 RVADYFVVCGLPDDQAEWEEETSEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDVIKS 64
             RV DYFVV GL D     ++E +     KS    APITD+AVI  + GE VP+GY  +++
Sbjct:     8 RVVDYFVVAGLTDTSTLLDQEINRLDT-KSTGPKAPITDIAVINKSAGETVPEGYTCVEA 66

Query:    65 TPTG 68
             TP+G
Sbjct:    67 TPSG 70

GO:0030904 "retromer complex" evidence=IEA

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=IEA

MGI|MGI:1914769 Dennd4c "DENN/MADD domain containing 4C" [Mus musculus (taxid:10090)]

 Score = 129 (50.5 bits), Expect = 8.2e-07, P = 8.2e-07
 Identities = 28/63 (44%), Positives = 39/63 (61%)

Query:     5 RVADYFVVCGLPDDQAEWEEETSEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDVIKS 64
             RV DYFVV GL D     ++E +  +   S    APITD+AVI  + GE VP+GY  +++
Sbjct:     8 RVTDYFVVAGLTDTSTLLDQEINR-TDTNSIGPKAPITDIAVIIKSAGETVPEGYTCVEA 66

Query:    65 TPT 67
             TP+
Sbjct:    67 TPS 69

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=ISO

GO:0030904 "retromer complex" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

UNIPROTKB|Q7Z401 DENND4A "C-myc promoter-binding protein" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 32/65 (49%), Positives = 37/65 (56%)

Query:     5 RVADYFVVCGLPDDQAEWEEETS-EHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDVIK 63
             RVADYFVV GL D     EEE     + +K      PITD++VI  +LGE VP  Y  I 
Sbjct:     8 RVADYFVVAGLTDVSKPLEEEIHFNDACHKVAKPKEPITDVSVIIKSLGEEVPQDYICID 67

Query:    64 STPTG 68
              TPTG
Sbjct:    68 VTPTG 72

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=IDA

UNIPROTKB|F1SNF8 DENND4C "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 128 (50.1 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 29/63 (46%), Positives = 39/63 (61%)

Query:     5 RVADYFVVCGLPDDQAEWEEETSEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDVIKS 64
             RV DYFVV GL D     ++E +     KS    APITD+AVI  + GE VP+GY  +++
Sbjct:     8 RVTDYFVVAGLTDTSTLLDQEINRLDT-KSIGPKAPITDIAVINKSAGETVPEGYTCVEA 66

Query:    65 TPT 67
             TP+
Sbjct:    67 TPS 69

GO:0030904 "retromer complex" evidence=IEA

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|F1SFW6 DENND4B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 110 (43.8 bits), Expect = 6.6e-05, P = 6.6e-05
 Identities = 31/67 (46%), Positives = 37/67 (55%)

Query:     5 RVADYFVVCGLPDDQAEWEEET--SEHSHYKSNHNDA-PITDLAVIFPTLGEFVPDGYDV 61
             R+ DYFV+ GL  D A   EET   E S        A PITD+AVI   LGE VP GY  
Sbjct:     8 RLVDYFVIAGLAGDGAPIPEETWVPEPSGPLRPPRPAEPITDVAVIARALGEEVPQGYTC 67

Query:    62 IKSTPTG 68
             I+++  G
Sbjct:    68 IQASTGG 74

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|F1PSN6 DENND4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 109 (43.4 bits), Expect = 8.4e-05, P = 8.4e-05
 Identities = 31/67 (46%), Positives = 37/67 (55%)

Query:     5 RVADYFVVCGLPDDQAEWEEETS--EHSHYKSNHNDA-PITDLAVIFPTLGEFVPDGYDV 61
             R+ DYFV+ GL  + A   EET   E S        A PITD+AVI   LGE VP GY  
Sbjct:     8 RLVDYFVIAGLAGNGAPIPEETRVPEPSGPLRPPRPAEPITDMAVIARALGEEVPQGYTC 67

Query:    62 IKSTPTG 68
             I+S+  G
Sbjct:    68 IQSSAGG 74

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|O75064 DENND4B "DENN domain-containing protein 4B" [Homo sapiens (taxid:9606)]

 Score = 106 (42.4 bits), Expect = 0.00018, P = 0.00018
 Identities = 31/67 (46%), Positives = 37/67 (55%)

Query:     5 RVADYFVVCGLPDDQAEWEEET--SEHSHYKSNHNDA-PITDLAVIFPTLGEFVPDGYDV 61
             R+ DYFVV GL  + A   EET   E S        A PITD+AVI   LGE VP GY  
Sbjct:     8 RLVDYFVVAGLAGNGAPIPEETWVPEPSGPLRPPRPAEPITDVAVIARALGEEVPQGYTC 67

Query:    62 IKSTPTG 68
             I+++  G
Sbjct:    68 IQASAGG 74

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=IDA

RGD|1560320 Dennd4b "DENN/MADD domain containing 4B" [Rattus norvegicus (taxid:10116)]

 Score = 104 (41.7 bits), Expect = 0.00029, P = 0.00029
 Identities = 28/67 (41%), Positives = 35/67 (52%)

Query:     5 RVADYFVVCGLPDDQAEWEEET---SEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDV 61
             R+ DYFVV GL  + A   EET         +      PITD+AVI   LGE VP GY  
Sbjct:    18 RLVDYFVVAGLAGNGAPIPEETWVPEPTGPLRPPRPAEPITDVAVIARALGEEVPQGYTC 77

Query:    62 IKSTPTG 68
             I+++  G
Sbjct:    78 IQTSAGG 84

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	69
PF10240	251	DUF2464: Protein of unknown function (DUF2464); In	96.44
smart00800	89	uDENN Domain always found upstream of DENN domain,	94.56
PF10240	251	DUF2464: Protein of unknown function (DUF2464); In	93.85
COG0799	115	Uncharacterized homolog of plant Iojap protein [Fu	82.9

>PF10240 DUF2464: Protein of unknown function (DUF2464); InterPro: IPR018798 FAM125A and FAM125B (also known as Multivesicular body subunit 12) interacts with CD2AP and CIN85/SH3KBP1, and is thought to be involved in the ligand-mediated internalization and down-regulation of EGF receptor []

Probab=96.44  E-value=0.0022  Score=47.55  Aligned_cols=29  Identities=34%  Similarity=0.607  Sum_probs=15.4

Q ss_pred             CCeeeEEEeeccCCCCCCCceEEeeeCCC-CC
Q psy4836          39 APITDLAVIFPTLGEFVPDGYDVIKSTPT-GT   69 (69)
Q Consensus        39 ~PITDiaVI~~slGE~vP~Gftcie~Tp~-G~   69 (69)
                      .|||+|+|+.-  -++||.||+.|.+|.. |+
T Consensus         1 ~PIT~v~~v~~--~~~cP~gy~~is~T~d~g~   30 (251)
T PF10240_consen    1 RPITAVGIVAS--KNKCPPGYTVISRTVDQGA   30 (251)
T ss_dssp             ----EEEEESS--TT---TT-EE--B-TT-S-
T ss_pred             CCcceEEEEec--CCCCCCCCeEEEeeccCCC
Confidence            49999999987  6999999999999988 64

; PDB: 3TOW_A.

>smart00800 uDENN Domain always found upstream of DENN domain, found in a variety of signalling proteins

Probab=94.56  E-value=0.028  Score=34.60  Aligned_cols=17  Identities=53%  Similarity=0.899  Sum_probs=14.1

Q ss_pred             eeeeeeEEEecCCCCCc
Q psy4836           4 RRVADYFVVCGLPDDQA   20 (69)
Q Consensus         4 kRvaDYFVVAGL~~~~~   20 (69)
                      +|++|||+|+|+.....
T Consensus         2 ~rl~d~f~vvg~~~~~~   18 (89)
T smart00800        2 SRLFDYFVVVGLDSDTG   18 (89)
T ss_pred             CcceeEEEEEeCCCCCC
Confidence            58999999999976543

The uDENN domain is part of the tripartite DENN domain. It is always found upstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.

>PF10240 DUF2464: Protein of unknown function (DUF2464); InterPro: IPR018798 FAM125A and FAM125B (also known as Multivesicular body subunit 12) interacts with CD2AP and CIN85/SH3KBP1, and is thought to be involved in the ligand-mediated internalization and down-regulation of EGF receptor []

Probab=93.85  E-value=0.06  Score=39.95  Aligned_cols=31  Identities=26%  Similarity=0.414  Sum_probs=19.0

Q ss_pred             CCCCCeeeEEEeeccCCCCCCCceEEeeeCCCC
Q psy4836          36 HNDAPITDLAVIFPTLGEFVPDGYDVIKSTPTG   68 (69)
Q Consensus        36 ~~~~PITDiaVI~~slGE~vP~Gftcie~Tp~G   68 (69)
                      ....=|+||.||--  +|.+|.||+.|..|..+
T Consensus        57 ~~~~Vv~di~ii~~--k~~~P~Gy~~i~~t~dt   87 (251)
T PF10240_consen   57 TPGNVVTDIQIIDE--KDPIPHGYSYISETVDT   87 (251)
T ss_dssp             GG-EEEEEEEEEET--TS---TT-EE--B-TTT
T ss_pred             CCCCEEEEEEEecC--CCCCCCCcEeccccccc
Confidence            35567999999985  89999999999999754

; PDB: 3TOW_A.

>COG0799 Uncharacterized homolog of plant Iojap protein [Function unknown]

Probab=82.90  E-value=0.71  Score=31.14  Aligned_cols=15  Identities=27%  Similarity=0.569  Sum_probs=11.1

Q ss_pred             Cce-eeeeeEEEecCC
Q psy4836           2 DDR-RVADYFVVCGLP   16 (69)
Q Consensus         2 eek-RvaDYFVVAGL~   16 (69)
                      .++ -++||||||==.
T Consensus        28 ~~~s~~tDyfVIatg~   43 (115)
T COG0799          28 SGKSSLTDYFVIATGN   43 (115)
T ss_pred             cCCcccccEEEEEEeC
Confidence            445 789999999443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	69
3tow_A	152	Multivesicular BODY subunit 12B; beta prism, membr	8e-04

>3tow_A Multivesicular BODY subunit 12B; beta prism, membrane binding domain, negatively charged MEMB protein transport; 1.34A {Homo sapiens} Length = 152

 Score = 34.3 bits (78), Expect = 8e-04
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 39 APITDLAVIFPTLGEFVPDGYDVIKSTPTG 68
           PIT + V+        P GYDV+  T  G
Sbjct: 2  DPITGVGVV--ASRNRAPTGYDVVAQTADG 29

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	69
3tow_A	152	Multivesicular BODY subunit 12B; beta prism, membr	98.69
3tow_A	152	Multivesicular BODY subunit 12B; beta prism, membr	97.02

>3tow_A Multivesicular BODY subunit 12B; beta prism, membrane binding domain, negatively charged MEMB protein transport; 1.34A {Homo sapiens}

Probab=98.69  E-value=9e-09  Score=70.77  Aligned_cols=30  Identities=37%  Similarity=0.634  Sum_probs=27.7

Q ss_pred             CCCeeeEEEeeccCCCCCCCceEEeeeCCCCC
Q psy4836          38 DAPITDLAVIFPTLGEFVPDGYDVIKSTPTGT   69 (69)
Q Consensus        38 ~~PITDiaVI~~slGE~vP~Gftcie~Tp~G~   69 (69)
                      .+|||||+|+..  +|+||+||+||+.|+.|+
T Consensus         1 ~~PIT~v~vv~~--~~~~P~gy~~Is~T~dG~   30 (152)
T 3tow_A            1 MDPITGVGVVAS--RNRAPTGYDVVAQTADGV   30 (152)
T ss_dssp             CCCCCEEEEESS--TTCCCTTCEECCBCTTSC
T ss_pred             CCCccEEEEEec--CCCCCCCCeEEEecCCCC
Confidence            389999999986  899999999999999985

>3tow_A Multivesicular BODY subunit 12B; beta prism, membrane binding domain, negatively charged MEMB protein transport; 1.34A {Homo sapiens}

Probab=97.02  E-value=0.0003  Score=48.22  Aligned_cols=31  Identities=19%  Similarity=0.333  Sum_probs=27.8

Q ss_pred             CCCCeeeEEEeeccCCCCCCCceEEeeeCCCCC
Q psy4836          37 NDAPITDLAVIFPTLGEFVPDGYDVIKSTPTGT   69 (69)
Q Consensus        37 ~~~PITDiaVI~~slGE~vP~Gftcie~Tp~G~   69 (69)
                      ...+||||.||  ...|.+|+||+.|+.|+.++
T Consensus        61 ~~~VvtDl~vi--~~Kd~lP~Gf~~I~~T~dt~   91 (152)
T 3tow_A           61 LGNVLVDMKLI--DIKDTLPVGFIPIQETVDTQ   91 (152)
T ss_dssp             GCEEEEEEEEE--ETTSCCCTTCEECCBCTTTC
T ss_pred             CCCeEEEEEEE--eCCCCCCCCcEEeeccCCcc
Confidence            47899999999  57999999999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00