Psyllid ID: psy4842

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MRYRWVDPRLAHNAKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLESCK
Secondary Structure (PSIPRED)
cccEEEccccccccccccccccccccccccccEEEEcccccEEEccccccEEEEEcccccEEEEEEEEEEEEEccccccccccccEEccEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccHHHHHHcccccEEEEcccccEEEEEccccEEEEEccccEEEEEEEEEEEEcccccHccccccccccEEEEEccc
Coil and Loop (DISEMBL)
mryrwvdprlahnakenylgeinlrdrvwtphlylvnehdsrimgsgrqdilisvqpdgtvlySTRLKVTLLCLMnlkkfpfdeqecplvlesck
Flexible Loop (DISEMBL)
mryrwvdprlahnakenylgeinlrdrVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNlkkfpfdeqecplvlesck
Low Complexity Region (SEG)
MRYRWVDPRLAHNAKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLESCK
Disordered region (IsUnstruct)
***RWVDPRLAHNAKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVL****
Disordered Region (DISOPRED)
MRYRWVDPRLAHNAKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLESCK
Disordered Region (DISEMBL)
MRYRWVDPRLAHNAKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLESCK
Disordered Region (DISPRO)
**YRWVDPRLAHNAKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLESCK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRYRWVDPRLAHNAKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLESCK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
O14764	452	Gamma-aminobutyric acid r	yes	N/A	0.936	0.196	0.411	3e-14
P22933	449	Gamma-aminobutyric acid r	yes	N/A	0.936	0.198	0.411	4e-14
P18506	449	Gamma-aminobutyric acid r	yes	N/A	0.936	0.198	0.411	5e-14
P50573	464	Gamma-aminobutyric acid r	no	N/A	0.978	0.200	0.347	3e-13
P63138	474	Gamma-aminobutyric acid r	no	N/A	0.936	0.187	0.377	4e-13
D1LYT2	512	Gamma-aminobutyric acid r	no	N/A	0.936	0.173	0.377	4e-13
P47870	512	Gamma-aminobutyric acid r	no	N/A	0.936	0.173	0.377	4e-13
P63137	512	Gamma-aminobutyric acid r	no	N/A	0.936	0.173	0.377	5e-13
P0C2W5	472	Gamma-aminobutyric acid r	no	N/A	0.936	0.188	0.377	5e-13
P28472	473	Gamma-aminobutyric acid r	no	N/A	0.936	0.188	0.377	6e-13

>sp|O14764|GBRD_HUMAN Gamma-aminobutyric acid receptor subunit delta OS=Homo sapiens GN=GABRD PE=1 SV=2

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5   WVDPRLAHNAKENYLG-EINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLY 63
           W D RL++N     LG +    D++W P  ++VN   +       ++ LI +QPDG +LY
Sbjct: 95  WRDSRLSYNHTNETLGLDSRFVDKLWLPDTFIVNAKSAWFHDVTVENKLIRLQPDGVILY 154

Query: 64  STRLKVTLLCLMNLKKFPFDEQECPLVLES 93
           S R+  T+ C M+L K+P DEQEC L LES
Sbjct: 155 SIRITSTVACDMDLAKYPMDEQECMLDLES 184

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.
Homo sapiens (taxid: 9606)

>sp|P22933|GBRD_MOUSE Gamma-aminobutyric acid receptor subunit delta OS=Mus musculus GN=Gabrd PE=2 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5   WVDPRLAHNAKENYLG-EINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLY 63
           W D RL++N     LG +    D++W P  ++VN   +       ++ LI +QPDG +LY
Sbjct: 95  WRDSRLSYNHTNETLGLDSRFVDKLWLPDTFIVNAKSAWFHDVTVENKLIRLQPDGVILY 154

Query: 64  STRLKVTLLCLMNLKKFPFDEQECPLVLES 93
           S R+  T+ C M+L K+P DEQEC L LES
Sbjct: 155 SIRITSTVACDMDLAKYPLDEQECMLDLES 184

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Mus musculus (taxid: 10090)

>sp|P18506|GBRD_RAT Gamma-aminobutyric acid receptor subunit delta OS=Rattus norvegicus GN=Gabrd PE=2 SV=2

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 5   WVDPRLAHNAKENYLG-EINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLY 63
           W D RL++N     LG +    D++W P  ++VN   +       ++ LI +QPDG +LY
Sbjct: 95  WRDSRLSYNHTNETLGLDSRFVDKLWLPDTFIVNAKSAWFHDVTVENKLIRLQPDGVILY 154

Query: 64  STRLKVTLLCLMNLKKFPFDEQECPLVLES 93
           S R+  T+ C M+L K+P DEQEC L LES
Sbjct: 155 SIRITSTVACDMDLAKYPMDEQECMLDLES 184

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Rattus norvegicus (taxid: 10116)

>sp|P50573|GBRR3_RAT Gamma-aminobutyric acid receptor subunit rho-3 OS=Rattus norvegicus GN=Gabrr3 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 2/95 (2%)

Query: 1   MRYRWVDPRLAHNAKENYLGEINLR--DRVWTPHLYLVNEHDSRIMGSGRQDILISVQPD 58
           +R+ W D RL+  +  N     + R   ++W P ++ V+   S I  +  ++I++ V PD
Sbjct: 107 LRHYWKDERLSFPSTTNKSMTFDRRLIQKIWVPDIFFVHSKRSFIHDTTVENIMLRVHPD 166

Query: 59  GTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
           G VL+S R+ V+ +C M+  +FP D Q C L LES
Sbjct: 167 GNVLFSLRITVSAMCFMDFSRFPLDTQNCSLELES 201

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Rattus norvegicus (taxid: 10116)

>sp|P63138|GBRB2_RAT Gamma-aminobutyric acid receptor subunit beta-2 OS=Rattus norvegicus GN=Gabrb2 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5   WVDPRLAHNAKE-NYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLY 63
           W D RL++N    N   +  + D++W P  Y +N+  S + G   ++ +I + PDGTVLY
Sbjct: 91  WRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLY 150

Query: 64  STRLKVTLLCLMNLKKFPFDEQECPLVLES 93
             R+  T  C+M+L+++P DEQ C L +ES
Sbjct: 151 GLRITTTAACMMDLRRYPLDEQNCTLEIES 180

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Rattus norvegicus (taxid: 10116)

>sp|D1LYT2|GBRB2_MACMU Gamma-aminobutyric acid receptor subunit beta-2 OS=Macaca mulatta GN=GABRB2 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5   WVDPRLAHNAKE-NYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLY 63
           W D RL++N    N   +  + D++W P  Y +N+  S + G   ++ +I + PDGTVLY
Sbjct: 91  WRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLY 150

Query: 64  STRLKVTLLCLMNLKKFPFDEQECPLVLES 93
             R+  T  C+M+L+++P DEQ C L +ES
Sbjct: 151 GLRITTTAACMMDLRRYPLDEQNCTLEIES 180

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Macaca mulatta (taxid: 9544)

>sp|P47870|GBRB2_HUMAN Gamma-aminobutyric acid receptor subunit beta-2 OS=Homo sapiens GN=GABRB2 PE=1 SV=2

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5   WVDPRLAHNAKE-NYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLY 63
           W D RL++N    N   +  + D++W P  Y +N+  S + G   ++ +I + PDGTVLY
Sbjct: 91  WRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLY 150

Query: 64  STRLKVTLLCLMNLKKFPFDEQECPLVLES 93
             R+  T  C+M+L+++P DEQ C L +ES
Sbjct: 151 GLRITTTAACMMDLRRYPLDEQNCTLEIES 180

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Homo sapiens (taxid: 9606)

>sp|P63137|GBRB2_MOUSE Gamma-aminobutyric acid receptor subunit beta-2 OS=Mus musculus GN=Gabrb2 PE=1 SV=2

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5   WVDPRLAHNAKE-NYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLY 63
           W D RL++N    N   +  + D++W P  Y +N+  S + G   ++ +I + PDGTVLY
Sbjct: 91  WRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLY 150

Query: 64  STRLKVTLLCLMNLKKFPFDEQECPLVLES 93
             R+  T  C+M+L+++P DEQ C L +ES
Sbjct: 151 GLRITTTAACMMDLRRYPLDEQNCTLEIES 180

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Mus musculus (taxid: 10090)

>sp|P0C2W5|GBRB2_BOVIN Gamma-aminobutyric acid receptor subunit beta-2 (Fragment) OS=Bos taurus GN=GABRB2 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5   WVDPRLAHNAKE-NYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLY 63
           W D RL++N    N   +  + D++W P  Y +N+  S + G   ++ +I + PDGTVLY
Sbjct: 89  WRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLY 148

Query: 64  STRLKVTLLCLMNLKKFPFDEQECPLVLES 93
             R+  T  C+M+L+++P DEQ C L +ES
Sbjct: 149 GLRITTTTACMMDLRRYPLDEQNCTLEIES 178

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Bos taurus (taxid: 9913)

>sp|P28472|GBRB3_HUMAN Gamma-aminobutyric acid receptor subunit beta-3 OS=Homo sapiens GN=GABRB3 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 5   WVDPRLAHNAKE-NYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLY 63
           W D RLA++    N   +  + D++W P  Y +N+  S + G   ++ +I + PDGTVLY
Sbjct: 92  WRDKRLAYSGIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLY 151

Query: 64  STRLKVTLLCLMNLKKFPFDEQECPLVLES 93
             R+  T  C+M+L+++P DEQ C L +ES
Sbjct: 152 GLRITTTAACMMDLRRYPLDEQNCTLEIES 181

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
328698853	509	PREDICTED: gamma-aminobutyric acid recep	0.978	0.182	0.712	3e-34
242014668	487	Acetylcholine receptor protein subunit d	0.978	0.190	0.567	5e-28
312381614	150	hypothetical protein AND_06031 [Anophele	1.0	0.633	0.54	1e-24
125983760	544	GA19960 [Drosophila pseudoobscura pseudo	0.978	0.170	0.520	6e-24
195163455	544	GL13104 [Drosophila persimilis] gi|19410	0.978	0.170	0.520	7e-24
170047535	457	neurotransmitter gated ion channel [Cule	0.978	0.203	0.540	3e-23
157106460	485	neurotransmitter gated ion channel [Aede	0.978	0.191	0.540	6e-23
357616723	493	neurotransmitter gated ion channel [Dana	1.0	0.192	0.484	9e-23
195396519	536	GJ16767 [Drosophila virilis] gi|19414664	0.978	0.173	0.540	2e-22
195131933	538	GI14703 [Drosophila mojavensis] gi|19390	0.978	0.172	0.530	3e-22

>gi|328698853|ref|XP_001950325.2| PREDICTED: gamma-aminobutyric acid receptor subunit rho-3-like [Acyrthosiphon pisum]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 82/94 (87%), Gaps = 1/94 (1%)

Query: 1   MRYRWVDPRLAHNA-KENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDG 59
           +RYRW D RL H++ K +  GE  L++RVWTPH+Y+VNEHDS IMGSGRQDIL++VQPDG
Sbjct: 102 IRYRWRDDRLVHSSSKSSIQGENKLKERVWTPHVYIVNEHDSNIMGSGRQDILVTVQPDG 161

Query: 60  TVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
           TVLYS RLKV+LLC+MNL+KFPFD+Q CPL+LES
Sbjct: 162 TVLYSARLKVSLLCMMNLQKFPFDQQTCPLILES 195

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014668|ref|XP_002428007.1| Acetylcholine receptor protein subunit delta precursor, putative [Pediculus humanus corporis] gi|212512526|gb|EEB15269.1| Acetylcholine receptor protein subunit delta precursor, putative [Pediculus humanus corporis]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 79/97 (81%), Gaps = 4/97 (4%)

Query: 1   MRYRWVDPRLAHNAK----ENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQ 56
           +R RW DPRLA+       +  +GE  L++++W PH+YLVNE++S++MG+ +QD+L++V+
Sbjct: 57  VRLRWKDPRLAYGQMAPKVDRIVGEAMLKNKIWVPHVYLVNENESKMMGADQQDVLVTVR 116

Query: 57  PDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
           PDGT+ +S R+KVTL CLMNL+KFPFD+QECPLVLES
Sbjct: 117 PDGTIYFSRRVKVTLFCLMNLQKFPFDKQECPLVLES 153

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312381614|gb|EFR27323.1| hypothetical protein AND_06031 [Anopheles darlingi]

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 71/100 (71%), Gaps = 5/100 (5%)

Query: 1   MRYRWVDPRL-----AHNAKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISV 55
           +++R+VDPRL     A N  +  +GE +LRD +W PH++L NE  S I+G+  +DIL S+
Sbjct: 51  LQFRYVDPRLVFKEVAPNRTKPIMGEQSLRDLLWVPHVFLANERSSDILGTAEKDILTSI 110

Query: 56  QPDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLESCK 95
            PDGTV+ STR+  TL C MNL+KFPFDEQ C  VLESCK
Sbjct: 111 SPDGTVIVSTRISATLYCWMNLQKFPFDEQHCSTVLESCK 150

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125983760|ref|XP_001355645.1| GA19960 [Drosophila pseudoobscura pseudoobscura] gi|54643961|gb|EAL32704.1| GA19960 [Drosophila pseudoobscura pseudoobscura]

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/98 (52%), Positives = 69/98 (70%), Gaps = 5/98 (5%)

Query: 1   MRYRWVDPRL-----AHNAKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISV 55
           ++ R++DPRL     +   ++  LGE  LRD +W PH++L NE DS I+G+  +DIL S+
Sbjct: 94  LQLRYLDPRLNFRNVSPKRRQPILGEQQLRDSLWMPHIFLANERDSSILGTTEKDILTSI 153

Query: 56  QPDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
            PDGTV+ S R+K TL C +NLKKFPFDEQ+C  VLES
Sbjct: 154 SPDGTVIVSNRIKATLYCWLNLKKFPFDEQDCSTVLES 191

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195163455|ref|XP_002022565.1| GL13104 [Drosophila persimilis] gi|194104557|gb|EDW26600.1| GL13104 [Drosophila persimilis]

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 51/98 (52%), Positives = 69/98 (70%), Gaps = 5/98 (5%)

Query: 1   MRYRWVDPRL-----AHNAKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISV 55
           ++ R++DPRL     +   ++  LGE  LRD +W PH++L NE DS I+G+  +DIL S+
Sbjct: 94  LQLRYLDPRLNFRNVSPKRRQPILGEQQLRDSLWMPHIFLANERDSSILGTTEKDILTSI 153

Query: 56  QPDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
            PDGTV+ S R+K TL C +NLKKFPFDEQ+C  VLES
Sbjct: 154 SPDGTVIVSNRIKATLYCWLNLKKFPFDEQDCSTVLES 191

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170047535|ref|XP_001851273.1| neurotransmitter gated ion channel [Culex quinquefasciatus] gi|167869946|gb|EDS33329.1| neurotransmitter gated ion channel [Culex quinquefasciatus]

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/98 (54%), Positives = 67/98 (68%), Gaps = 5/98 (5%)

Query: 1   MRYRWVDPRL-----AHNAKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISV 55
           ++ R+VD RL     A N  E  +GE +LRD +W PH++L NE  S I+G+  +DIL SV
Sbjct: 48  LQLRYVDSRLVFKKVAPNRTEPIMGEQSLRDVLWVPHVFLANERSSDILGTAEKDILTSV 107

Query: 56  QPDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
            PDGTV+ STR+  TL C MNL+KFPFDEQ C  VLES
Sbjct: 108 SPDGTVIISTRISATLYCWMNLQKFPFDEQHCSTVLES 145

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157106460|ref|XP_001649333.1| neurotransmitter gated ion channel [Aedes aegypti] gi|108879853|gb|EAT44078.1| AAEL004513-PA, partial [Aedes aegypti]

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 53/98 (54%), Positives = 67/98 (68%), Gaps = 5/98 (5%)

Query: 1   MRYRWVDPRL-----AHNAKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISV 55
           ++ R+VD RL     A N  E  +GE +LRD +W PH++L NE  S I+G+  +DIL SV
Sbjct: 73  LQLRYVDSRLVFKKVAPNRTEPIMGEQSLRDVLWVPHVFLANERSSDILGTAEKDILTSV 132

Query: 56  QPDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
            PDGTV+ STR+  TL C MNL+KFPFDEQ C  VLES
Sbjct: 133 SPDGTVIISTRISATLYCWMNLQKFPFDEQHCSTVLES 170

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357616723|gb|EHJ70365.1| neurotransmitter gated ion channel [Danaus plexippus]

 Score =  110 bits (276), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 69/99 (69%), Gaps = 4/99 (4%)

Query: 1   MRYRWVDPRLAHN----AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQ 56
           ++ RW D RLA++     ++  +GE +LR R+W PHLY+ NE  S +MG+  +D+LIS+ 
Sbjct: 95  LQLRWTDARLAYSLYSPERQKIIGESDLRQRIWVPHLYMSNEQSSSLMGTDSKDVLISIA 154

Query: 57  PDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLESCK 95
           PDG VL+S R++  L C MNL+KFPFD+Q C + LES K
Sbjct: 155 PDGEVLFSRRMQAVLYCWMNLQKFPFDDQRCSMNLESWK 193

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195396519|ref|XP_002056879.1| GJ16767 [Drosophila virilis] gi|194146646|gb|EDW62365.1| GJ16767 [Drosophila virilis]

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 68/98 (69%), Gaps = 5/98 (5%)

Query: 1   MRYRWVDPRL-----AHNAKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISV 55
           ++ R++DPRL     +    +  LGE  LRD +W PH++L NE DS I+G+  +DIL SV
Sbjct: 94  LQMRYLDPRLNFRHVSPKRLQPILGEQQLRDSLWLPHIFLANERDSSILGTTEKDILTSV 153

Query: 56  QPDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
            PDGTV+ STR+K TL C +NLKKFPFDEQ C  VLES
Sbjct: 154 SPDGTVIVSTRIKATLYCWLNLKKFPFDEQHCSTVLES 191

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195131933|ref|XP_002010398.1| GI14703 [Drosophila mojavensis] gi|193908848|gb|EDW07715.1| GI14703 [Drosophila mojavensis]

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 68/98 (69%), Gaps = 5/98 (5%)

Query: 1   MRYRWVDPRL-----AHNAKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISV 55
           ++ R++DPRL     A    +  LGE  LRD +W PH++L NE DS I+G+  +DIL S+
Sbjct: 94  LQMRYLDPRLNFRHVAPKRLQPILGEQQLRDNIWLPHIFLANERDSSILGTKEKDILTSI 153

Query: 56  QPDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
            PDGTV+ S+R+K TL C +NLKKFPFDEQ C  VLES
Sbjct: 154 SPDGTVIVSSRIKATLYCWLNLKKFPFDEQYCSTVLES 191

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
FB|FBgn0029733	524	CG6927 [Drosophila melanogaste	0.978	0.177	0.510	8.3e-22
FB|FBgn0039840	526	CG11340 [Drosophila melanogast	0.978	0.176	0.469	7.7e-20
FB|FBgn0036727	509	CG7589 [Drosophila melanogaste	0.978	0.182	0.447	1.5e-19
UNIPROTKB|I3LJE0	100	I3LJE0 "Uncharacterized protei	0.957	0.91	0.391	2e-15
UNIPROTKB|I3LBM0	180	LOC100623754 "Uncharacterized	1.0	0.527	0.395	4.2e-15
WB|WBGene00017314	563	lgc-39 [Caenorhabditis elegans	0.936	0.158	0.433	1.8e-14
UNIPROTKB|G3V5B4	138	GABRB3 "Gamma-aminobutyric aci	0.936	0.644	0.377	1e-13
UNIPROTKB|I3LPH1	158	I3LPH1 "Uncharacterized protei	0.936	0.563	0.377	1e-13
ZFIN|ZDB-GENE-081105-170	469	gabrd "gamma-aminobutyric acid	0.978	0.198	0.404	1.2e-13
UNIPROTKB|E2R3M6	456	GABRD "Uncharacterized protein	0.936	0.195	0.422	3.1e-13

FB|FBgn0029733 CG6927 [Drosophila melanogaster (taxid:7227)]

 Score = 261 (96.9 bits), Expect = 8.3e-22, P = 8.3e-22
 Identities = 50/98 (51%), Positives = 68/98 (69%)

Query:     1 MRYRWVDPRL-----AHNAKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISV 55
             ++ R++DPRL     +   ++  LGE +LR+ +W PH++L NE DS I+G   +DIL S+
Sbjct:    94 LQMRYLDPRLNFRNVSPKRRQPILGEEHLRNSLWMPHIFLANERDSSILGLTEKDILTSI 153

Query:    56 QPDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
              PDGTV+ S R+K TL C +NLKKFPFDEQ C  VLES
Sbjct:   154 SPDGTVIVSNRIKATLYCWLNLKKFPFDEQHCSTVLES 191

GO:0016935 "glycine-gated chloride channel complex" evidence=ISS

GO:0016934 "extracellular-glycine-gated chloride channel activity" evidence=ISS

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

FB|FBgn0039840 CG11340 [Drosophila melanogaster (taxid:7227)]

 Score = 243 (90.6 bits), Expect = 7.7e-20, P = 7.7e-20
 Identities = 46/98 (46%), Positives = 66/98 (67%)

Query:     1 MRYRWVDPRLAH-----NAKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISV 55
             ++ R++DPRLA      N ++  +GE  L+  +W PH++L NE  S ++G+  +D L S+
Sbjct:   130 LQLRYLDPRLAFSSYLPNRRQPIMGESELKKMLWVPHIFLTNEQASTVLGTSAKDELTSI 189

Query:    56 QPDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
              P+GTVL STRL+ TL C MN +KFPFDEQ+C   LES
Sbjct:   190 YPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTTLES 227

GO:0016935 "glycine-gated chloride channel complex" evidence=ISS

GO:0016934 "extracellular-glycine-gated chloride channel activity" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

FB|FBgn0036727 CG7589 [Drosophila melanogaster (taxid:7227)]

 Score = 240 (89.5 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 43/96 (44%), Positives = 67/96 (69%)

Query:     1 MRYRWVDPRLAH---NAKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
             ++ R+ D RLA+   N  +N LG+ +L +R+W PH++  NE +S I+G+  +D+L S+ P
Sbjct:   102 LQLRFQDKRLAYKAFNRSDNILGQKHLSERLWLPHIFFANERESSILGTDEKDVLTSLSP 161

Query:    58 DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
             +G V+ STR++ +L C MN +KFPFD+Q C  VLES
Sbjct:   162 EGNVIISTRMQASLYCWMNFQKFPFDQQFCSTVLES 197

GO:0016933 "extracellular-glycine-gated ion channel activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

UNIPROTKB|I3LJE0 I3LJE0 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 36/92 (39%), Positives = 56/92 (60%)

Query:     5 WVDPRLAHNAKE-NYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLY 63
             W D RL++N    N   +  + D++W P  Y +N+  S + G   ++ +I + PDGTVLY
Sbjct:     7 WRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLY 66

Query:    64 STRLKVTLLCLMNLKKFPFDEQECPLVLESCK 95
               R+  T  C+M+L+++P DEQ C L +ESCK
Sbjct:    67 GLRITTTAACMMDLRRYPLDEQNCTLEIESCK 98

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

UNIPROTKB|I3LBM0 LOC100623754 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 38/96 (39%), Positives = 57/96 (59%)

Query:     1 MRYRWVDPRLAHNAKENYLG-EINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDG 59
             + + W D RL++N     LG +    D++W P  ++VN   +       ++ LI +QPDG
Sbjct:    67 LHHSWRDSRLSYNHTNETLGLDSRFVDKLWLPDTFIVNAKSAWFHDVTVENKLIRLQPDG 126

Query:    60 TVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLESCK 95
              +LYS R+  T+ C M+L K+P DEQEC L LESC+
Sbjct:   127 VILYSIRITSTVACDMDLAKYPLDEQECMLHLESCE 162

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

WB|WBGene00017314 lgc-39 [Caenorhabditis elegans (taxid:6239)]

 Score = 194 (73.4 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 39/90 (43%), Positives = 52/90 (57%)

Query:     5 WVDPRLAHNAKENYLGEINL-RDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLY 63
             W D RLAHN     L    L  DR+W P LY VN   + +      ++++ V PDG +  
Sbjct:   179 WFDRRLAHNCTHPILVTSKLIADRIWYPDLYFVNSKYAYLQEVTTPNLMVIVYPDGLIFK 238

Query:    64 STRLKVTLLCLMNLKKFPFDEQECPLVLES 93
             + RL VTL C+M+LK FP D QECPL ++S
Sbjct:   239 TMRLDVTLSCMMDLKLFPLDYQECPLTIQS 268

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|G3V5B4 GABRB3 "Gamma-aminobutyric acid receptor subunit beta-3" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/90 (37%), Positives = 54/90 (60%)

Query:     5 WVDPRLAHNAKE-NYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLY 63
             W D RLA++    N   +  + D++W P  Y +N+  S + G   ++ +I + PDGTVLY
Sbjct:     7 WRDKRLAYSGIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLY 66

Query:    64 STRLKVTLLCLMNLKKFPFDEQECPLVLES 93
               R+  T  C+M+L+++P DEQ C L +ES
Sbjct:    67 GLRITTTAACMMDLRRYPLDEQNCTLEIES 96

GO:0004890 "GABA-A receptor activity" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0060119 "inner ear receptor cell development" evidence=IEA

GO:0060384 "innervation" evidence=IEA

GO:0090102 "cochlea development" evidence=IEA

UNIPROTKB|I3LPH1 I3LPH1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/90 (37%), Positives = 54/90 (60%)

Query:     5 WVDPRLAHNAKE-NYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLY 63
             W D RLA++    N   +  + D++W P  Y +N+  S + G   ++ +I + PDGTVLY
Sbjct:     1 WRDKRLAYSGIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLY 60

Query:    64 STRLKVTLLCLMNLKKFPFDEQECPLVLES 93
               R+  T  C+M+L+++P DEQ C L +ES
Sbjct:    61 GLRITTTAACMMDLRRYPLDEQNCTLEIES 90

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0004890 "GABA-A receptor activity" evidence=IEA

ZFIN|ZDB-GENE-081105-170 gabrd "gamma-aminobutyric acid (GABA) A receptor, delta" [Danio rerio (taxid:7955)]

 Score = 185 (70.2 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 38/94 (40%), Positives = 56/94 (59%)

Query:     1 MRYRWVDPRLAHNAKENYLG-EINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDG 59
             +R  W D RL++N     LG +    D++W P  ++VN   +       ++ LI +QPDG
Sbjct:   102 LRQSWRDDRLSYNHTNKTLGLDSRFVDKLWLPDTFIVNAKSAWFHDVTVENKLIRLQPDG 161

Query:    60 TVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
              +LYS+R+  T+ C M+L K+P DEQEC L LES
Sbjct:   162 VILYSSRITSTVACDMDLTKYPMDEQECMLDLES 195

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0004890 "GABA-A receptor activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0045202 "synapse" evidence=IEA

UNIPROTKB|E2R3M6 GABRD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 3.1e-13, P = 3.1e-13
 Identities = 38/90 (42%), Positives = 53/90 (58%)

Query:     5 WVDPRLAHNAKENYLG-EINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLY 63
             W D RLA+N     LG +    D++W P  ++VN   +       ++ LI +QPDG +LY
Sbjct:    95 WRDSRLAYNHTNETLGLDSRFVDKLWLPDTFIVNAKSAWFHDVTVENKLIRLQPDGVILY 154

Query:    64 STRLKVTLLCLMNLKKFPFDEQECPLVLES 93
             S R+  T+ C M+L K+P DEQEC L LES
Sbjct:   155 SIRITSTVACDMDLAKYPMDEQECMLHLES 184

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0004890 "GABA-A receptor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	95
pfam02931	215	pfam02931, Neur_chan_LBD, Neurotransmitter-gated i	4e-27
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	4e-19

>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand binding domain

 Score = 98.1 bits (245), Expect = 4e-27
 Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 5/96 (5%)

Query: 1   MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
           +R +W D RLA +  E+Y G  +LR   D++W P + L N+ D  I      +  + V P
Sbjct: 53  LRQQWTDERLAWD-PEDYGGITSLRLPSDKIWKPDIVLYNKADG-IHDITTPNTNVRVYP 110

Query: 58  DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
           DGTVL+S        C M+L  FPFD+Q C L   S
Sbjct: 111 DGTVLWSPPAIYKSSCPMDLTYFPFDQQNCSLKFGS 146

This family is the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. Length = 215

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score = 79.8 bits (197), Expect = 4e-19
 Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 4/95 (4%)

Query: 2   RYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQPD 58
           R  W D RL  N  E Y G   +R   D +W P ++  NE D+R  G    ++L+ + P+
Sbjct: 83  RQEWTDERLQWN-PEEYPGVTLVRTPDDSIWVPDIFFYNEKDARFHGITMTNVLVRIHPN 141

Query: 59  GTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
           G+VLYS R+ +TL C M+L+ FPFD Q C L  ES
Sbjct: 142 GSVLYSPRITLTLACPMDLRNFPFDVQNCSLKFES 176

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
TIGR00860	459	LIC Cation transporter family protein. selective w	99.97
KOG3643|consensus	459		99.97
PF02931	217	Neur_chan_LBD: Neurotransmitter-gated ion-channel	99.96
KOG3645|consensus	449		99.96
KOG3646|consensus	486		99.95
KOG3644|consensus	457		99.93
KOG3642|consensus	466		99.9

>TIGR00860 LIC Cation transporter family protein

Probab=99.97  E-value=2.8e-31  Score=183.62  Aligned_cols=94  Identities=40%  Similarity=0.847  Sum_probs=84.7

Q ss_pred             CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842           1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL   77 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~   77 (95)
                      ++|+|+|+||+|||+ +++++..   +.++||+||++++|++++..+.....+..+++++||+|.|.++++.++.|+||+
T Consensus        82 l~~~W~D~rL~Wnp~-~y~~i~~i~~~~~~IW~PDi~l~N~~~~~~~~~~~~~~~v~~~~~G~V~~~~~~~~~~~C~~d~  160 (459)
T TIGR00860        82 LRQEWTDERLQWNPE-EYPGVTLVRTPDDSIWVPDIFFYNEKDARFHGITMTNVLVRIHPNGSVLYSPRITLTLACPMDL  160 (459)
T ss_pred             eeeEEeCCccCCCCc-cCCCceeccccccccccCcEEeecCccccccccccCceEEEEcCCCcEEEecCceEEeccccee
Confidence            478999999999997 7777654   478999999999999998777666667778888899999999999999999999


Q ss_pred             cccCCCCceeeeEEeecC
Q psy4842          78 KKFPFDEQECPLVLESCK   95 (95)
Q Consensus        78 ~~fPfD~q~C~l~~~S~~   95 (95)
                      ++||||+|+|+|+||||+
T Consensus       161 ~~FPfD~Q~C~l~fgSw~  178 (459)
T TIGR00860       161 RNFPFDVQNCSLKFESWG  178 (459)
T ss_pred             ccCCCCCccccEEEhhhc
Confidence            999999999999999995

selective while glycine receptors are anion selective).

>KOG3643|consensus

Probab=99.97  E-value=9.7e-31  Score=176.21  Aligned_cols=95  Identities=40%  Similarity=0.738  Sum_probs=86.8

Q ss_pred             CceEEeCCCcccCCC--CcccccccccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccCc
Q psy4842           1 MRYRWVDPRLAHNAK--ENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNLK   78 (95)
Q Consensus         1 l~~~W~D~rL~w~~~--~~~~~~~~~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~~   78 (95)
                      ++|.|+||||+|+..  .+........++||+||.++.|++++.+|..+..|.++++++||+|.+..|++.++.|+|||+
T Consensus        86 ~rq~W~D~RLay~~~~~~slTl~~~~~~~LWvPDTff~N~KkSf~H~~T~~N~~lRl~~dGtVlys~RlT~Ta~C~MDL~  165 (459)
T KOG3643|consen   86 LRQTWRDPRLAYSSKNIDSLTLDVRYVDKLWVPDTFFPNSKKSFFHDVTTHNSLLRLHPDGTVLYSIRLTVTAACPMDLK  165 (459)
T ss_pred             hhhhhcCcccccCCCCCceEEEchhhhhccccCceecccCcccccceeeecceEEEEcCCCeEEEEEEEEEEEecccccc
Confidence            578999999999932  344555566899999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCceeeeEEeecC
Q psy4842          79 KFPFDEQECPLVLESCK   95 (95)
Q Consensus        79 ~fPfD~q~C~l~~~S~~   95 (95)
                      +||+|+|+|++.++||.
T Consensus       166 ~fPmD~Q~C~LeiESYG  182 (459)
T KOG3643|consen  166 LFPMDSQNCKLEIESYG  182 (459)
T ss_pred             cCCCcccceeEEEEecc
Confidence            99999999999999983

>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=99.96  E-value=3.1e-29  Score=158.69  Aligned_cols=93  Identities=37%  Similarity=0.711  Sum_probs=73.3

Q ss_pred             CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842           1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL   77 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~   77 (95)
                      +.+.|.|+||+|+++ +++++..   ..+.||+|++++.|...... ........+.|+++|+|.+..++.+++.|+|++
T Consensus        53 ~~~~W~D~rL~w~~~-~~~~i~~~~v~~~~iW~P~l~~~n~~~~~~-~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~  130 (217)
T PF02931_consen   53 IRLSWKDPRLKWNPS-DYGGIESIRVPSSQIWTPDLYFYNSVSGSF-EITEPNSNVRVYSDGTVRYSPRFTLTFSCPMDL  130 (217)
T ss_dssp             EEEEEEECCGE-STT-TTTTESEEEEEGGGS----EEETTBSSSEE-ECS-SSEEEEEETTSEEEEEEEEEEEEEECETT
T ss_pred             hceeccccccccChh-hccCcccccccccceEecccccccccccce-ecccccccccccccchheeeecccccccccccc
Confidence            368999999999997 6766654   46899999999999554433 233345668899999999999999999999999


Q ss_pred             cccCCCCceeeeEEeecC
Q psy4842          78 KKFPFDEQECPLVLESCK   95 (95)
Q Consensus        78 ~~fPfD~q~C~l~~~S~~   95 (95)
                      .+||||+|.|.|.|+||.
T Consensus       131 ~~fPfD~q~C~i~~~s~~  148 (217)
T PF02931_consen  131 RDFPFDSQNCSIKFGSWS  148 (217)
T ss_dssp             TSSSSSEEEEEEEEEESS
T ss_pred             cccccccceeEEEEeccc
Confidence            999999999999999984

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....

>KOG3645|consensus

Probab=99.96  E-value=1.5e-29  Score=174.61  Aligned_cols=92  Identities=25%  Similarity=0.536  Sum_probs=81.1

Q ss_pred             CceEEeCCCcccCCCCcccccccc---cCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842           1 MRYRWVDPRLAHNAKENYLGEINL---RDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL   77 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~~~~~---~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~   77 (95)
                      +.++|+|+||+|||+ ++++++..   .++||+||++++|++.+........+  +.+.++|+|.+.+++..++.|++|+
T Consensus        82 l~~~W~D~~L~Wnp~-~~~~I~~i~vp~~~IW~Pdi~l~N~~~~~~~~~~~~~--v~v~~~G~V~~~~p~i~~s~C~idv  158 (449)
T KOG3645|consen   82 LKQSWTDERLSWDPS-DYGGITKIRVPSSKIWLPDIVLYNNADGDFEVEDLTN--VLVTYTGEVLWYPPAIYKSSCPIDV  158 (449)
T ss_pred             eeeEEeccCcccChH-HcCCceEEEecHHHcCcCcEEEEecccccccccccce--EEEEECCEEEEEcceEEEeeccccc
Confidence            357899999999997 78877664   79999999999998777665555544  7789999999999999999999999


Q ss_pred             cccCCCCceeeeEEeecC
Q psy4842          78 KKFPFDEQECPLVLESCK   95 (95)
Q Consensus        78 ~~fPfD~q~C~l~~~S~~   95 (95)
                      ++||||.|+|.++||||+
T Consensus       159 ~~FPfD~Q~C~i~f~sw~  176 (449)
T KOG3645|consen  159 TYFPFDVQNCSIKFGSWT  176 (449)
T ss_pred             ccCCCcceeEeEEEeccc
Confidence            999999999999999996

>KOG3646|consensus

Probab=99.95  E-value=2.7e-29  Score=169.98  Aligned_cols=92  Identities=25%  Similarity=0.528  Sum_probs=83.8

Q ss_pred             CceEEeCCCcccCCCCcccccccc---cCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842           1 MRYRWVDPRLAHNAKENYLGEINL---RDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL   77 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~~~~~---~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~   77 (95)
                      ++++|+|-+|+|||+ +|+|+...   .++||+||+.+||+++..+.....++  +.++++|.|.|.++-+.+++|.+|.
T Consensus        79 l~y~W~D~~LrW~ps-eygnI~dvR~p~~~iWkPDVLLYNSade~FDsTy~tN--~Vv~~tG~v~~vPPGIfk~sCkiDI  155 (486)
T KOG3646|consen   79 LQYQWNDYKLRWDPS-EYGNITDIRFPGGNIWKPDVLLYNSADEQFDSTYKTN--YVVYSTGSVLWVPPGIFKSSCKIDI  155 (486)
T ss_pred             hheeehhhhhccCHH-HhCCceeeccCCccccCCceeccccccccCCCcceee--EEEccCCeeeecCCceeeeeeEEEE
Confidence            467999999999997 88887765   58999999999999999887766666  5589999999999999999999999


Q ss_pred             cccCCCCceeeeEEeecC
Q psy4842          78 KKFPFDEQECPLVLESCK   95 (95)
Q Consensus        78 ~~fPfD~q~C~l~~~S~~   95 (95)
                      +.||||+|.|.++|||||
T Consensus       156 twFPFD~Q~C~mKFGSWT  173 (486)
T KOG3646|consen  156 TWFPFDDQVCYLKFGSWT  173 (486)
T ss_pred             EEecccccEEEEEeeeEE
Confidence            999999999999999997

>KOG3644|consensus

Probab=99.93  E-value=4.4e-26  Score=156.96  Aligned_cols=95  Identities=44%  Similarity=0.802  Sum_probs=82.8

Q ss_pred             CceEEeCCCcccC-CC-Ccccccc-ccc--CceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecc
Q psy4842           1 MRYRWVDPRLAHN-AK-ENYLGEI-NLR--DRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLM   75 (95)
Q Consensus         1 l~~~W~D~rL~w~-~~-~~~~~~~-~~~--~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~   75 (95)
                      ++++|.||||+++ .+ +...... ...  .+||.||++|.|++.+.+|.....|..++|++||+|.+..|+.++.+|+|
T Consensus        93 ~~~~W~DpRL~~~~~~~~~~~~~~~~l~~~~~iW~Pd~~F~NsK~a~~H~~~~~N~ll~I~pnGtV~~~~Ri~l~~~C~m  172 (457)
T KOG3644|consen   93 FRERWQDPRLAYNALKFDHILPCKLNLSLKQKIWTPDTFFANSKSAEFHKSTKPNVLLMIFPNGTVWYSYRISLTLPCNM  172 (457)
T ss_pred             eeeeEeCccccccccCcccccccccccccCCceecCceeeecccceeeecCCCCceEEEEecCCeEEEEEEEEEeeceee
Confidence            5789999999988 44 2221111 123  56999999999999999999999999999999999999999999999999


Q ss_pred             cCcccCCCCceeeeEEeecC
Q psy4842          76 NLKKFPFDEQECPLVLESCK   95 (95)
Q Consensus        76 d~~~fPfD~q~C~l~~~S~~   95 (95)
                      |+.+||+|+|+|.+.++||.
T Consensus       173 ~L~~fP~D~Q~C~l~~eSy~  192 (457)
T KOG3644|consen  173 DLSKFPMDSQECKLQLESYA  192 (457)
T ss_pred             ehhhCCCccceeeEEEEEec
Confidence            99999999999999999984

>KOG3642|consensus

Probab=99.90  E-value=1.1e-24  Score=147.75  Aligned_cols=95  Identities=33%  Similarity=0.608  Sum_probs=84.9

Q ss_pred             CceEEeCCCcccCCC-CcccccccccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccCcc
Q psy4842           1 MRYRWVDPRLAHNAK-ENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNLKK   79 (95)
Q Consensus         1 l~~~W~D~rL~w~~~-~~~~~~~~~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~~~   79 (95)
                      ++|.|.|+||+++.. +..........+||+||.++.|++++..|.....+.+++|..||+|.|..++++.+.|+|++.+
T Consensus        95 FrQ~W~D~RL~f~~~~~~L~Ln~~m~~kiW~PDTfF~NgkkS~~H~iT~pN~l~Ri~~dG~vlyt~RlTi~A~C~m~l~~  174 (466)
T KOG3642|consen   95 FRQTWVDDRLKFNGPQEALPLNSLMLSKIWIPDTFFRNGKKSYAHNITTPNKLVRIYIDGTVLYTMRLTIPAECPMHLAR  174 (466)
T ss_pred             EEEeehhhhhcccCcchhhccchhhhcCcccCCcccccCcccceeeccCCCceEEEeECCcceEEEEEeecccCcchhhc
Confidence            479999999999965 2222223347999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeeeEEeecC
Q psy4842          80 FPFDEQECPLVLESCK   95 (95)
Q Consensus        80 fPfD~q~C~l~~~S~~   95 (95)
                      ||+|.|+|.++||||.
T Consensus       175 fPMD~haCpl~fgSy~  190 (466)
T KOG3642|consen  175 FPMDSHACPLKFGSYA  190 (466)
T ss_pred             CCCCcccCcceecccC
Confidence            9999999999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	95
3rhw_A	347	C. Elegans Glutamate-Gated Chloride Channel (Glucl)		9e-11
3tlt_A	321	The Glic Pentameric Ligand-Gated Ion Channel H11'f		6e-06
3uu3_A	321	The Glic Pentameric Ligand-Gated Ion Channel Loop2-		7e-06
3tlw_A	321	The Glic Pentameric Ligand-Gated Ion Channel Loop2-		7e-06
3tlv_A	321	The Glic Pentameric Ligand-Gated Ion Channel Loop2-		7e-06
3tlu_A	321	The Glic Pentameric Ligand-Gated Ion Channel Loop2-		7e-06
3tls_A	321	The Glic Pentameric Ligand-Gated Ion Channel E19'p		7e-06
4ilc_A	320	The Glic Pentameric Ligand-gated Ion Channel In Com		7e-06
4il9_A	320	The Pentameric Ligand-gated Ion Channel Glic A237f		7e-06
3ei0_A	317	Structure Of The E221a Mutant Of The Gloebacter Vio		8e-06
3p4w_A	318	Structure Of Desflurane Bound To A Pentameric Ligan		8e-06
3ehz_A	317	X-Ray Structure Of The Pentameric Ligand Gated Ion		8e-06
2xq9_A	317	Pentameric Ligand Gated Ion Channel Glic Mutant E22		8e-06
3lsv_A	317	Structure Of The A237f Mutant Of The Pentameric Lig		8e-06
3eam_A	317	An Open-Pore Structure Of A Bacterial Pentameric Li		8e-06
2bg9_C	369	Refined Structure Of The Nicotinic Acetylcholine Re		2e-04
4aq5_C	522	Gating Movement In Acetylcholine Receptor Analysed		2e-04
3uq5_A	324	X-Ray Structure Of A Pentameric Ligand Gated Ion Ch		9e-04
3uq7_A	324	X-Ray Structure Of A Pentameric Ligand Gated Ion Ch		9e-04

>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In Complex With Fab And Ivermectin Length = 347

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 1   MRYRWVDPRLAHNAKENYLGE---INLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
           +R  W+D RL++  K +   +   + +  ++W P  +  NE  +      + ++LI +  
Sbjct: 55  LRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHN 114
Query: 58  DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
           DGTVLYS R+ + L C M L+ +P D Q+C + L S
Sbjct: 115 DGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLAS 150

>pdb|3TLT|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant In A Locally-Closed Conformation (Lc1 Subtype) Length = 321

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5   WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
           W D RLA +  +     +    + +W P +  VN  ++R       D++ ISV PDGTV 
Sbjct: 51  WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 105
Query: 63  YSTRLKVTLLCLMNLKKFPFDEQ 85
           Y  R    +L  ++ +++PFD Q
Sbjct: 106 YLERFSARVLSPLDFRRYPFDSQ 128

>pdb|3UU3|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20' Oxidized Mutant In A Locally-Closed Conformation (Lc1 Subtype) Length = 321

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5   WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
           W D RLA +  +     +    + +W P +  VN  ++R       D++ ISV PDGTV 
Sbjct: 51  WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 105
Query: 63  YSTRLKVTLLCLMNLKKFPFDEQ 85
           Y  R    +L  ++ +++PFD Q
Sbjct: 106 YLERFSARVLSPLDFRRYPFDSQ 128

>pdb|3TLW|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21' Oxidized Mutant In A Locally-Closed Conformation (Lc2 Subtype) Length = 321

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5   WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
           W D RLA +  +     +    + +W P +  VN  ++R       D++ ISV PDGTV 
Sbjct: 51  WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 105
Query: 63  YSTRLKVTLLCLMNLKKFPFDEQ 85
           Y  R    +L  ++ +++PFD Q
Sbjct: 106 YLERFSARVLSPLDFRRYPFDSQ 128

>pdb|3TLV|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22' Oxidized Mutant In A Locally-Closed Conformation (Lc3 Subtype) Length = 321

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5   WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
           W D RLA +  +     +    + +W P +  VN  ++R       D++ ISV PDGTV 
Sbjct: 51  WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 105
Query: 63  YSTRLKVTLLCLMNLKKFPFDEQ 85
           Y  R    +L  ++ +++PFD Q
Sbjct: 106 YLERFSARVLSPLDFRRYPFDSQ 128

>pdb|3TLU|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24' Oxidized Mutant In A Locally-Closed Conformation (Lc1 Subtype) Length = 321

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5   WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
           W D RLA +  +     +    + +W P +  VN  ++R       D++ ISV PDGTV 
Sbjct: 51  WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 105
Query: 63  YSTRLKVTLLCLMNLKKFPFDEQ 85
           Y  R    +L  ++ +++PFD Q
Sbjct: 106 YLERFSARVLSPLDFRRYPFDSQ 128

>pdb|3TLS|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant In A Locally-Closed Conformation (Lc2 Subtype) Length = 321

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5   WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
           W D RLA +  +     +    + +W P +  VN  ++R       D++ ISV PDGTV 
Sbjct: 51  WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 105
Query: 63  YSTRLKVTLLCLMNLKKFPFDEQ 85
           Y  R    +L  ++ +++PFD Q
Sbjct: 106 YLERFSARVLSPLDFRRYPFDSQ 128

>pdb|4ILC|A Chain A, The Glic Pentameric Ligand-gated Ion Channel In Complex With Sulfates Length = 320

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5   WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
           W D RLA +  +     +    + +W P +  VN  ++R       D++ ISV PDGTV 
Sbjct: 51  WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 105
Query: 63  YSTRLKVTLLCLMNLKKFPFDEQ 85
           Y  R    +L  ++ +++PFD Q
Sbjct: 106 YLERFSARVLSPLDFRRYPFDSQ 128

>pdb|4IL9|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In Complex With Bromide Length = 320

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5   WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
           W D RLA +  +     +    + +W P +  VN  ++R       D++ ISV PDGTV 
Sbjct: 51  WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 105
Query: 63  YSTRLKVTLLCLMNLKKFPFDEQ 85
           Y  R    +L  ++ +++PFD Q
Sbjct: 106 YLERFSARVLSPLDFRRYPFDSQ 128

>pdb|3EI0|A Chain A, Structure Of The E221a Mutant Of The Gloebacter Violaceus Pentameric Ligand Gated Ion Channnel (Glic) Length = 317

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5   WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
           W D RLA +  +     +    + +W P +  VN  ++R       D++ ISV PDGTV 
Sbjct: 47  WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 101
Query: 63  YSTRLKVTLLCLMNLKKFPFDEQ 85
           Y  R    +L  ++ +++PFD Q
Sbjct: 102 YLERFSARVLSPLDFRRYPFDSQ 124

>pdb|3P4W|A Chain A, Structure Of Desflurane Bound To A Pentameric Ligand-Gated Ion Channel, Glic Length = 318

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5   WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
           W D RLA +  +     +    + +W P +  VN  ++R       D++ ISV PDGTV 
Sbjct: 47  WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 101
Query: 63  YSTRLKVTLLCLMNLKKFPFDEQ 85
           Y  R    +L  ++ +++PFD Q
Sbjct: 102 YLERFSARVLSPLDFRRYPFDSQ 124

>pdb|3EHZ|A Chain A, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel Of Gloebacter Violaceus (Glic) In A Presumptive Open Conformation Length = 317

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5   WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
           W D RLA +  +     +    + +W P +  VN  ++R       D++ ISV PDGTV 
Sbjct: 47  WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 101
Query: 63  YSTRLKVTLLCLMNLKKFPFDEQ 85
           Y  R    +L  ++ +++PFD Q
Sbjct: 102 YLERFSARVLSPLDFRRYPFDSQ 124

>pdb|2XQ9|A Chain A, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In Complex With Tetraethylarsonium (Teas) Length = 317

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5   WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
           W D RLA +  +     +    + +W P +  VN  ++R       D++ ISV PDGTV 
Sbjct: 47  WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 101
Query: 63  YSTRLKVTLLCLMNLKKFPFDEQ 85
           Y  R    +L  ++ +++PFD Q
Sbjct: 102 YLERFSARVLSPLDFRRYPFDSQ 124

>pdb|3LSV|A Chain A, Structure Of The A237f Mutant Of The Pentameric Ligand Gated Channel From Gloeobacter Violaceus Length = 317

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5   WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
           W D RLA +  +     +    + +W P +  VN  ++R       D++ ISV PDGTV 
Sbjct: 47  WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 101
Query: 63  YSTRLKVTLLCLMNLKKFPFDEQ 85
           Y  R    +L  ++ +++PFD Q
Sbjct: 102 YLERFSARVLSPLDFRRYPFDSQ 124

>pdb|3EAM|A Chain A, An Open-Pore Structure Of A Bacterial Pentameric Ligand- Gated Ion Channel Length = 317

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5   WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
           W D RLA +  +     +    + +W P +  VN  ++R       D++ ISV PDGTV 
Sbjct: 47  WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 101
Query: 63  YSTRLKVTLLCLMNLKKFPFDEQ 85
           Y  R    +L  ++ +++PFD Q
Sbjct: 102 YLERFSARVLSPLDFRRYPFDSQ 124

>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 369

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 1   MRYRWVDPRLAHNAKE-NYLGEINLR-DRVWTPHLYLVNEHDSRIMGSGRQDILISVQPD 58
           M + W D RL  NA E + +  + LR + +W P + L N +D +   +   ++L  V+P+
Sbjct: 58  MDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQNNNDGQYNVAYFCNVL--VRPN 115
Query: 59  GTVLYSTRLKVTLLCLMNLKKFPFDEQECPL 89
           G V +         C +N+  FPFD Q C L
Sbjct: 116 GYVTWLPPAIFRSSCPINVLYFPFDWQNCSL 146

>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 522

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 1   MRYRWVDPRLAHNAKE-NYLGEINLR-DRVWTPHLYLVNEHDSRIMGSGRQDILISVQPD 58
           M + W D RL  NA E + +  + LR + +W P + L N +D +   +   ++L  V+P+
Sbjct: 79  MDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQNNNDGQYNVAYFCNVL--VRPN 136
Query: 59  GTVLYSTRLKVTLLCLMNLKKFPFDEQECPL 89
           G V +         C +N+  FPFD Q C L
Sbjct: 137 GYVTWLPPAIFRSSCPINVLYFPFDWQNCSL 167

>pdb|3UQ5|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a F16l) In The Presence Of 10 Mm Cysteamine Length = 324

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 16  ENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLM 75
           EN   E  + + +W P L  +N   S   G+ R    + + PDG V+Y+ R   +    M
Sbjct: 61  ENTQIERWINNGLWVPALEFINVVGSPDTGNKR----LMLFPDGRVIYNARFLGSFSNDM 116
Query: 76  NLKKFPFDEQECPLVLE 92
           + + FPFD Q+  L LE
Sbjct: 117 DFRLFPFDRQQFVLELE 133

>pdb|3UQ7|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s F16l) In Presence Of 10 Mm Cysteamine Length = 324

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 16  ENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLM 75
           EN   E  + + +W P L  +N   S   G+ R    + + PDG V+Y+ R   +    M
Sbjct: 61  ENTQIERWINNGLWVPALEFINVVGSPDTGNKR----LMLFPDGRVIYNARFLGSFSNDM 116
Query: 76  NLKKFPFDEQECPLVLE 92
           + + FPFD Q+  L LE
Sbjct: 117 DFRLFPFDRQQFVLELE 133

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	95
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	1e-32
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	5e-32
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	2e-31
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	2e-28
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	3e-14
2qc1_B	212	Acetylcholine receptor subunit alpha; nicotinic ac	5e-14
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	3e-13
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	4e-13
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	5e-13
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	1e-12
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	2e-12
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	2e-12
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	3e-12
1uw6_A	211	Acetylcholine-binding protein; pentamer, IGG fold,	1e-11
2wn9_A	228	Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl	1e-10
4afh_A	230	ACHBP; acetylcholine-binding protein, nicotinic re	7e-10
3sq6_A	204	ACHBP, neuronal acetylcholine receptor subunit alp	2e-09
2bj0_A	203	Acetylcholine-binding protein; 3D-structure, glyco	6e-09

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347

 Score =  114 bits (288), Expect = 1e-32
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 1   MRYRWVDPRLAHNAKENY---LGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
           +R  W+D RL++  K +       + +  ++W P  +  NE  +      + ++LI +  
Sbjct: 55  LRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHN 114

Query: 58  DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLESC 94
           DGTVLYS R+ + L C M L+ +P D Q+C + L S 
Sbjct: 115 DGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASY 151

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Length = 201

 Score =  109 bits (275), Expect = 5e-32
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 1   MRYRWVDPRLAHNAKENYLGEIN-LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDG 59
           +   W D RLA +   + +       + +W P +  VN  ++R        + ISV PDG
Sbjct: 43  LSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDAD----VVDISVSPDG 98

Query: 60  TVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
           TV Y  R    +L  ++ ++   D Q   + L  
Sbjct: 99  TVQYLERFSARVLSPLDGRRTESDSQTLHIYLIV 132

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322

 Score =  111 bits (279), Expect = 2e-31
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 9/98 (9%)

Query: 1   MRYRWVDPRLAHNAKENYLGEI-----NLRDRVWTPHLYLVNEHDSRIMGSGRQDILISV 55
           +  +W          +  + E       + + +W P L  +N   S   G    +  + +
Sbjct: 39  IVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGSPDTG----NKRLML 94

Query: 56  QPDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
            PDG V+Y+ R   +    M+ + FPFD Q+  L LE 
Sbjct: 95  FPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEP 132

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321

 Score =  103 bits (258), Expect = 2e-28
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 5/94 (5%)

Query: 1   MRYRWVDPRLAHNAKENYLGEINL-RDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDG 59
           +   W D RLA +   + +       + +W P +  VN  ++R        + ISV PDG
Sbjct: 47  LSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADV----VDISVSPDG 102

Query: 60  TVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
           TV Y  R    +L  ++ +++PFD Q   + L  
Sbjct: 103 TVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIV 136

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 65.3 bits (159), Expect = 3e-14
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 6/96 (6%)

Query: 1   MRYRWVDPRLAHNAKENYLG--EINLR-DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
           +R +W+D RL  N  + Y G  +I L  D VW P L L N  D          +L+    
Sbjct: 56  LRQQWIDVRLRWNPAD-YGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVHMTKLLLD--Y 112

Query: 58  DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
            G ++++        C + +  FPFD+Q C + L  
Sbjct: 113 TGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGI 148

>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Length = 212

 Score = 63.6 bits (155), Expect = 5e-14
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 1   MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
           ++ +WVD  L  N  + Y G   +    +++W P + L N  D          +L+    
Sbjct: 57  LKQQWVDYNLKWNPDD-YGGVKKIHIPSEKIWRPDVVLYNNADGDFAIVKFTKVLLD--Y 113

Query: 58  DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
            G + ++        C + +  FPFDEQ C + L +
Sbjct: 114 TGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGT 149

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 62.2 bits (151), Expect = 3e-13
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 1   MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
           +  +W D RL+ N  E Y G   +R   + +W P + L N  D +   +   ++L+    
Sbjct: 55  IEIQWNDYRLSWNTSE-YEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYANVLVY--N 111

Query: 58  DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
           DG++ +         C + +  FPFD Q C LV  S
Sbjct: 112 DGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRS 147

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369

 Score = 62.2 bits (151), Expect = 4e-13
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 1   MRYRWVDPRLAHNAKENYLG--EINLR-DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
           M + W D RL  NA E Y     + LR + +W P + L N +D +   +   ++L+   P
Sbjct: 58  MDHAWYDHRLTWNASE-YSDISILRLRPELIWIPDIVLQNNNDGQYNVAYFCNVLVR--P 114

Query: 58  DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
           +G V +         C +N+  FPFD Q C L   +
Sbjct: 115 NGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTA 150

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461

 Score = 61.9 bits (150), Expect = 5e-13
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 1   MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
           +R +W+D RL  N  + Y G   +R   D VW P L L N  D          +L+    
Sbjct: 80  LRQQWIDVRLRWNPAD-YGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVHMTKLLLD--Y 136

Query: 58  DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
            G ++++        C + +  FPFD+Q C + L  
Sbjct: 137 TGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGI 172

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 60.7 bits (147), Expect = 1e-12
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 1   MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
           +   W D RL  +    Y G  +L    D VW P + L+N +D     +   ++L+    
Sbjct: 56  LNLAWTDYRLQWDPAA-YEGIKDLSIPSDDVWQPDIVLMNNNDGSFEITLHVNVLVQ--H 112

Query: 58  DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
            G V +         C + +  FPFD Q C +V +S
Sbjct: 113 TGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKS 148

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522

 Score = 60.2 bits (145), Expect = 2e-12
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 1   MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
           M + W D RL  NA E Y     LR   + +W P + L N +D +   +   ++L+   P
Sbjct: 79  MDHAWYDHRLTWNASE-YSDISILRLRPELIWIPDIVLQNNNDGQYNVAYFCNVLVR--P 135

Query: 58  DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
           +G V +         C +N+  FPFD Q C L   +
Sbjct: 136 NGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTA 171

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493

 Score = 60.1 bits (145), Expect = 2e-12
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 1   MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
           +   W D RL  +    Y G  +L    D VW P + L+N +D     +   ++L+    
Sbjct: 80  LNLAWTDYRLQWDPAA-YEGIKDLSIPSDDVWQPDIVLMNNNDGSFEITLHVNVLVQ--H 136

Query: 58  DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
            G V +         C + +  FPFD Q C +V +S
Sbjct: 137 TGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKS 172

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488

 Score = 59.8 bits (144), Expect = 3e-12
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 1   MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
           +  +W D RL+ N  E Y G   +R   + +W P + L N  D +   +   ++L+    
Sbjct: 55  IEIQWNDYRLSWNTSE-YEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYANVLVY--N 111

Query: 58  DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
           DG++ +         C + +  FPFD Q C LV  S
Sbjct: 112 DGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRS 147

>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Length = 211

 Score = 57.2 bits (138), Expect = 1e-11
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 1   MRYRWVDPRLAHNAKENYLGEINLR-DRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDG 59
            +  W D  LA N+      ++++    +W P L   N              L  V  DG
Sbjct: 55  QQTTWSDRTLAWNSSH-SPDQVSVPISSLWVPDLAAYNAIS---KPEVLTPQLARVVSDG 110

Query: 60  TVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
            VLY   ++    C ++          C + + S
Sbjct: 111 EVLYMPSIRQRFSCDVSGVDTE-SGATCRIKIGS 143

>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Length = 228

 Score = 54.4 bits (131), Expect = 1e-10
 Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 8/96 (8%)

Query: 1   MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
            + RW    L  +  E Y    + R     +WTP +   +              +  V  
Sbjct: 65  EQQRWKLNSLMWDPNE-YGNITDFRTSAADIWTPDITAYSSTRP---VQVLSPQIAVVTH 120

Query: 58  DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
           DG+V++    +++ +C         +   C +   S
Sbjct: 121 DGSVMFIPAQRLSFMCDPT-GVDSEEGATCAVKFGS 155

>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* Length = 230

 Score = 52.6 bits (126), Expect = 7e-10
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 11/96 (11%)

Query: 1   MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
           ++  WVD  L  + +        +    D +WTP + L N  D  +        ++    
Sbjct: 65  VKLSWVDTILRWDPEP-PFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVF--S 121

Query: 58  DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
           +GTVL+     + +LC         D   C     S
Sbjct: 122 NGTVLWIPPAVLKVLC-----VSQDDVDSCHFQFGS 152

>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A* Length = 204

 Score = 50.6 bits (121), Expect = 2e-09
 Identities = 20/96 (20%), Positives = 28/96 (29%), Gaps = 8/96 (8%)

Query: 1   MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
           ++  W D  L  N  E Y G   +      +W P L   N              L  V  
Sbjct: 54  LQMSWTDHYLQWNVSE-YPGVKQVSVPISSLWVPDLAAYNAIS---KPEVLTPQLALVNS 109

Query: 58  DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
            G V Y   ++    C ++          C L   S
Sbjct: 110 SGHVQYLPSIRQRFSCDVSGVDTE-SGATCKLKFGS 144

>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Length = 203

 Score = 49.8 bits (119), Expect = 6e-09
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 5/94 (5%)

Query: 1   MRYRWVDPRLAHNAKENYLGEINLR-DRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDG 59
            +  W  P  +     + L +++L   ++WTP L   N               + V  DG
Sbjct: 52  TQASWKVPYYSSLLSSSSLDQVSLPVSKMWTPDLSFYNAIA---APELLSADRVVVSKDG 108

Query: 60  TVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
           +V+Y    +V   C + +         C + + S
Sbjct: 109 SVIYVPSQRVRFTCDL-INVDTEPGATCRIKVGS 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
2qc1_B	212	Acetylcholine receptor subunit alpha; nicotinic ac	100.0
4aoe_A	205	Acetylcholine-binding protein type 2; ligand gated	99.98
3sq6_A	204	ACHBP, neuronal acetylcholine receptor subunit alp	99.98
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	99.98
4aod_A	205	Acetylcholine-binding protein type 1; ligand gated	99.98
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	99.97
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	99.97
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	99.97
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	99.97
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	99.97
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	99.97
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	99.97
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	99.97
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	99.96
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	99.96
2bj0_A	203	Acetylcholine-binding protein; 3D-structure, glyco	99.96
4afh_A	230	ACHBP; acetylcholine-binding protein, nicotinic re	99.96
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	99.96
2wn9_A	228	Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl	99.95
1uw6_A	211	Acetylcholine-binding protein; pentamer, IGG fold,	99.95

>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B

Probab=100.00  E-value=6.1e-34  Score=179.50  Aligned_cols=92  Identities=24%  Similarity=0.499  Sum_probs=81.3

Q ss_pred             CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842           1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL   77 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~   77 (95)
                      ++|.|.|+||+|+|+ +++++..   +.++||+||++++|++++.++....  ..++|++||+|.+.+++++++.|+||+
T Consensus        57 ~~~~W~D~rL~w~~~-~~~~i~~l~~~~~~iW~PDi~~~N~~~~~~~~~~~--~~~~v~~~G~V~~~~~~~~~~~C~mdl  133 (212)
T 2qc1_B           57 LKQQWVDYNLKWNPD-DYGGVKKIHIPSEKIWRPDVVLYNNADGDFAIVKF--TKVLLDYTGHITWTPPAIFKSYCEIIV  133 (212)
T ss_dssp             EEEEEECTTCCCCGG-GGTTCCEEEECGGGSCCCCEEECCBTTTSSCEECC--CCEEEETTCEEEECCEEEEEEEEEECC
T ss_pred             EeeEEECCCcccChh-hcCCeeEEEcchhhccCCceeccccccccccccce--eeEEEECCeeEEEEeeeEEEEEcccee
Confidence            468999999999996 7776544   4799999999999999887665433  458899999999999999999999999


Q ss_pred             cccCCCCceeeeEEeecC
Q psy4842          78 KKFPFDEQECPLVLESCK   95 (95)
Q Consensus        78 ~~fPfD~q~C~l~~~S~~   95 (95)
                      ++||||+|+|+|+||||+
T Consensus       134 ~~FPfD~Q~C~l~f~S~~  151 (212)
T 2qc1_B          134 THFPFDEQNCSMKLGTRT  151 (212)
T ss_dssp             SSSSCCEEEEEEEEEESS
T ss_pred             ecCCCCceEEeEEEEccc
Confidence            999999999999999996

>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}

Probab=99.98  E-value=6.6e-33  Score=173.99  Aligned_cols=89  Identities=19%  Similarity=0.357  Sum_probs=76.7

Q ss_pred             CceEEeCCCcccCCCCccccc---ccccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842           1 MRYRWVDPRLAHNAKENYLGE---INLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL   77 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~~---~~~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~   77 (95)
                      ++|+|+|+||+|+++  ++++   ..+.++||+||++++|+++....   ..+..++|++||+|.|.++++++++|+|| 
T Consensus        56 l~~~W~D~rL~W~~~--~~~i~~i~v~~~~IW~PDi~l~N~~~~~~~---~~~~~v~v~~~G~V~~~~~~~~~s~C~~d-  129 (205)
T 4aoe_A           56 LVISWKDRSLSWSNE--CTTFNELTLPSKYIWLPHIEVYNSIGKPGI---HSDQLVRVYKDGTVTFVPQYTIRFSCALE-  129 (205)
T ss_dssp             EEEEEECCCCCCSCC--CSCCCEEEEEGGGSCCCCCEETTBSSCCEE---CSCCEEEEETTSEEEECCEEEEEEECCCT-
T ss_pred             EEEEEECCccccCCc--CCCccEEEeCHHHhccccEEEecccccccc---ccceEEEEeCCcEEEEeCcEEEEEecccC-
Confidence            478999999999974  5554   44579999999999999876432   23456889999999999999999999999 


Q ss_pred             cccCCCCceeeeEEeecC
Q psy4842          78 KKFPFDEQECPLVLESCK   95 (95)
Q Consensus        78 ~~fPfD~q~C~l~~~S~~   95 (95)
                      ..||||+|+|.|+||||+
T Consensus       130 ~~fPfD~Q~C~l~fgSw~  147 (205)
T 4aoe_A          130 NVTTEQGAACTLKFGPWT  147 (205)
T ss_dssp             TSSSSSCEEEEEEEECSS
T ss_pred             cCCCccCCeEEEEEECcc
Confidence            899999999999999996

>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*

Probab=99.98  E-value=5.4e-33  Score=174.36  Aligned_cols=88  Identities=22%  Similarity=0.346  Sum_probs=77.8

Q ss_pred             CceEEeCCCcccCCCCccccccc---ccCceeecceEEeeccc--ceeeccCcceeEEEEcCCCeEEEeecceEEEEecc
Q psy4842           1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHD--SRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLM   75 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~--~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~   75 (95)
                      ++|.|+|+||+|+|+ +++++..   +.++||+||++++|+++  +.++..     .++|++||+|.+.+++++++.|+|
T Consensus        54 ~~~~W~D~rL~w~~~-~~~~i~~i~~~~~~iW~PDi~~~N~~~~~~~~~~~-----~v~v~~~G~V~~~~~~~~~~~C~m  127 (204)
T 3sq6_A           54 LQMSWTDHYLQWNVS-EYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQ-----LALVNSSGHVQYLPSIRQRFSCDV  127 (204)
T ss_dssp             EEEEEECGGGCCCTT-TSSSCCEEEEEGGGSCCCCEEETTBSSCCEECSCC-----EEEEETTSEEEECCEEEEEEECCC
T ss_pred             eeeEEECCCcccChH-HcCCccEEEcCHHHCcCCCEEeEcccccCCccccc-----EEEEEeCCEEEEecCeeEEEeccc
Confidence            468999999999997 7776554   47999999999999998  554321     688999999999999999999999


Q ss_pred             cCcccCCCCceeeeEEeecC
Q psy4842          76 NLKKFPFDEQECPLVLESCK   95 (95)
Q Consensus        76 d~~~fPfD~q~C~l~~~S~~   95 (95)
                      ++ +||||+|+|+|+||||+
T Consensus       128 dl-~fPfD~Q~C~l~f~S~~  146 (204)
T 3sq6_A          128 SG-VDTESGATCKLKFGSWT  146 (204)
T ss_dssp             GG-GSSSSCEEEEEEEEESS
T ss_pred             cc-cCCCCCcEEEEEEEeec
Confidence            99 99999999999999996

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}

Probab=99.98  E-value=6.8e-33  Score=173.58  Aligned_cols=91  Identities=26%  Similarity=0.406  Sum_probs=72.6

Q ss_pred             CceEEeCCCcccCCC-CcccccccccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccCcc
Q psy4842           1 MRYRWVDPRLAHNAK-ENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNLKK   79 (95)
Q Consensus         1 l~~~W~D~rL~w~~~-~~~~~~~~~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~~~   79 (95)
                      ++|.|.|+||+|+++ ..+..+..+.++||+||++++|+++...    ..+..++|++||+|.+.+++++++.|+||+++
T Consensus        43 l~~~W~D~rL~w~~~~~~i~~~~~~~~~IW~PDi~l~N~~~~~~----~~~~~v~v~~~G~V~~~~~~~~~s~C~mdl~~  118 (201)
T 3igq_A           43 LSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARD----ADVVDISVSPDGTVQYLERFSARVLSPLDGRR  118 (201)
T ss_dssp             EEEEEECGGGCCCHHHHTCSCEECCGGGSCCCCEEESSBSSSCE----EEEEEEEECTTCEEEEEEEEEEEEECCCC---
T ss_pred             EeeEEECCccCCCCcCCCEeEecccccCcCccCEEEEccccccc----ccceEEEEeCCCcEEEecceeEEEecCccccc
Confidence            468999999999997 2233344558999999999999977642    34567899999999999999999999999999


Q ss_pred             cCCCCceeeeEEeecC
Q psy4842          80 FPFDEQECPLVLESCK   95 (95)
Q Consensus        80 fPfD~q~C~l~~~S~~   95 (95)
                      ||||+|+|+|+||||+
T Consensus       119 FPfD~Q~C~l~f~S~~  134 (201)
T 3igq_A          119 TESDSQTLHIYLIVRS  134 (201)
T ss_dssp             ---CEEEEEEEEEECC
T ss_pred             CCCCccEeeEEEeccC
Confidence            9999999999999996

>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}

Probab=99.98  E-value=1.5e-32  Score=172.38  Aligned_cols=89  Identities=26%  Similarity=0.366  Sum_probs=76.9

Q ss_pred             CceEEeCCCcccCCCCcccccc---cccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842           1 MRYRWVDPRLAHNAKENYLGEI---NLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL   77 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~~~---~~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~   77 (95)
                      ++|.|+|+||+|+++  ++++.   .+.++||+||++++|+++...   ...+..+.|++||+|.|.++++++++|+|++
T Consensus        56 l~~~W~D~rL~W~~~--~~~i~~i~v~~~~IW~PDi~l~N~~~~~~---~~~~~~~~v~~~G~V~~~~~~~~~s~C~~d~  130 (205)
T 4aod_A           56 TTLVWKDRCLNWFNE--FTSFKELTVPIAEIWTPDIFIFDSVGAPE---IFSDKLARVSQDGTVTYVPQLKVRLSCPLAD  130 (205)
T ss_dssp             EEEEEECCCCCCSCC--CSCCCEEEEEGGGSCCCCEEETTBSSCCE---ECSCCEEEEETTSEEEECCEEEEEEECCCTT
T ss_pred             EEEEEECCceeeCCc--CCCccEeeccHHhcCcCCEEEEcccccce---eecceEEEEecCCEEEEeccEEEEEEecCcc
Confidence            478999999999974  55554   457999999999999987643   2334568899999999999999999999999


Q ss_pred             cccCCCCceeeeEEeecC
Q psy4842          78 KKFPFDEQECPLVLESCK   95 (95)
Q Consensus        78 ~~fPfD~q~C~l~~~S~~   95 (95)
                      .+|||| |+|.|+||||+
T Consensus       131 ~~fPfD-Q~C~l~fgSw~  147 (205)
T 4aod_A          131 LKLETG-VTCSLKSGSWT  147 (205)
T ss_dssp             SSSSSC-EEEEEEEEESS
T ss_pred             ccCCCC-cEEEEEEECcc
Confidence            999999 99999999996

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*

Probab=99.97  E-value=2.4e-32  Score=182.44  Aligned_cols=94  Identities=32%  Similarity=0.607  Sum_probs=84.6

Q ss_pred             CceEEeCCCcccCCCCccccccc----ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEeccc
Q psy4842           1 MRYRWVDPRLAHNAKENYLGEIN----LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMN   76 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~~~~----~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d   76 (95)
                      ++|+|+|+||+|||+ +++++..    +.++||+||++++|++++.++.....+..++|++||+|.|.++++.++.|+||
T Consensus        55 l~~~W~D~rL~w~p~-~~~~~~~l~~~~~~~IW~PDi~l~N~~~~~~~~~~~~n~~v~i~~~G~V~~~~~~~~~s~C~~d  133 (347)
T 3rhw_A           55 LRESWIDKRLSYGVK-GDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCPMY  133 (347)
T ss_dssp             EEEEEECGGGCSSTT-CSSSCSEEECCTTCCCCCCCEECTTEEEEEECCSSSCSEEEEEETTSEEEEEEEEEEEEECCCC
T ss_pred             EeeEEECcccCCCCc-cCCCceEEEecchhceecCCEeeeccccccccccccccEEEEEeCCCCEEEecceEEEEEeeee
Confidence            478999999999997 6655442    46999999999999999888877777888899999999999999999999999


Q ss_pred             CcccCCCCceeeeEEeecC
Q psy4842          77 LKKFPFDEQECPLVLESCK   95 (95)
Q Consensus        77 ~~~fPfD~q~C~l~~~S~~   95 (95)
                      +++||||+|+|+|+||||+
T Consensus       134 l~~FPfD~Q~C~l~f~S~~  152 (347)
T 3rhw_A          134 LQYYPMDVQQCSIDLASYA  152 (347)
T ss_dssp             CTTGGGCEEEEEEEEEESS
T ss_pred             eccCCCcceeEEEEeccCc
Confidence            9999999999999999985

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.97  E-value=1.3e-31  Score=180.20  Aligned_cols=92  Identities=28%  Similarity=0.526  Sum_probs=81.7

Q ss_pred             CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842           1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL   77 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~   77 (95)
                      ++|+|+|+||+|+|+ +++++..   +.++||+||++++|++++.++.....+  +.|++||+|.+.+++++++.|+||+
T Consensus        56 l~~~W~D~rL~w~~~-~~~~i~~l~v~~~~IW~PDi~~~N~~~~~~~~~~~~~--~~v~~~G~V~~~~~~~~~~~C~mdl  132 (370)
T 2bg9_B           56 LNLAWTDYRLQWDPA-AYEGIKDLSIPSDDVWQPDIVLMNNNDGSFEITLHVN--VLVQHTGAVSWHPSAIYRSSCTIKV  132 (370)
T ss_dssp             CEEEEECTTSCCCTT-TTSSCSEEEEESSSSCCCCEEESSCCCSCEESSSSCE--EEEETTSEEEECCEEEEEECCCCTT
T ss_pred             EeeeeECcccCcCcc-ccCCeeEEEechhhccCCCccccccccccccccccce--EEEeCCceEEEEecceEEEEccCcc
Confidence            578999999999997 7776544   479999999999999998777654444  6799999999999999999999999


Q ss_pred             cccCCCCceeeeEEeecC
Q psy4842          78 KKFPFDEQECPLVLESCK   95 (95)
Q Consensus        78 ~~fPfD~q~C~l~~~S~~   95 (95)
                      ++||||+|+|+++||||+
T Consensus       133 ~~FPfD~Q~C~l~f~S~~  150 (370)
T 2bg9_B          133 MYFPFDWQNCTMVFKSYT  150 (370)
T ss_dssp             CSSSTTCCCCEEEEEESS
T ss_pred             cCCCCCceeeeEEEEecc
Confidence            999999999999999985

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.97  E-value=1.1e-31  Score=180.47  Aligned_cols=92  Identities=28%  Similarity=0.471  Sum_probs=81.4

Q ss_pred             CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842           1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL   77 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~   77 (95)
                      ++|+|+|+||+|||+ +++++..   +.++||+||++++|++++.++.....+  +.|++||+|.+.+++++++.|+||+
T Consensus        58 l~~~W~D~rL~w~~~-~~~~i~~l~v~~~~IW~PDi~~~N~~~~~~~~~~~~~--~~i~~~G~V~~~~~~~~~~~C~mdl  134 (369)
T 2bg9_C           58 MDHAWYDHRLTWNAS-EYSDISILRLRPELIWIPDIVLQNNNDGQYNVAYFCN--VLVRPNGYVTWLPPAIFRSSCPINV  134 (369)
T ss_dssp             EEEEEECTTTCCCCC-CCCTCSCEEECGGGSCCCCEEETTTCSSCCBSSSSCC--EEECSSSEEEECCEEEEEECCSCGG
T ss_pred             EeeeeECCCcccCcc-ccCCeeEEEecHHhccCCcEecccccccccccccccc--EEEECCccEEEecCEEEEEECcCcc
Confidence            468999999999997 7776554   479999999999999998776554444  6799999999999999999999999


Q ss_pred             cccCCCCceeeeEEeecC
Q psy4842          78 KKFPFDEQECPLVLESCK   95 (95)
Q Consensus        78 ~~fPfD~q~C~l~~~S~~   95 (95)
                      ++||||+|+|+++||||+
T Consensus       135 ~~FPfD~Q~C~l~f~S~~  152 (369)
T 2bg9_C          135 LYFPFDWQNCSLKFTALN  152 (369)
T ss_dssp             GSSSTTCCEEEEEEEESS
T ss_pred             cCCCCCceEeeEEEEEec
Confidence            999999999999999995

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.97  E-value=1.3e-31  Score=180.29  Aligned_cols=92  Identities=27%  Similarity=0.520  Sum_probs=81.6

Q ss_pred             CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842           1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL   77 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~   77 (95)
                      ++|+|+|+||+|+|+ +++++..   +.++||+||++++|++++.++...  +..++|++||+|.+.+++++++.|+||+
T Consensus        56 l~~~W~D~rL~w~p~-~~~~i~~l~v~~~~IW~PDi~~~N~~~~~~~~~~--~~~~~i~~~G~V~~~~~~~~~~~C~mdl  132 (370)
T 2bg9_A           56 LRQQWIDVRLRWNPA-DYGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVH--MTKLLLDYTGKIMWTPPAIFKSYCEIIV  132 (370)
T ss_dssp             EEEEECCTTSCCCTT-THHHHSSEEEEGGGSCCCCEEETTCCCSCEESCS--SCEEEECSSCCEEECCEEEEEEECCCCT
T ss_pred             EeeeeECCCccCChh-hcCCccEEEechhhccCCcEeccccccccccccc--cceEEEECCeeEEEecceEEEEECCCCc
Confidence            468999999999996 7766543   479999999999999988776543  3458899999999999999999999999


Q ss_pred             cccCCCCceeeeEEeecC
Q psy4842          78 KKFPFDEQECPLVLESCK   95 (95)
Q Consensus        78 ~~fPfD~q~C~l~~~S~~   95 (95)
                      ++||||+|+|+++||||+
T Consensus       133 ~~FPfD~Q~C~l~f~S~~  150 (370)
T 2bg9_A          133 THFPFDQQNCTMKLGIWT  150 (370)
T ss_dssp             TSSSSSCEEEEEEEEESS
T ss_pred             CCCCCCcceeeEEEEEec
Confidence            999999999999999995

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.97  E-value=1.2e-31  Score=180.38  Aligned_cols=92  Identities=27%  Similarity=0.463  Sum_probs=81.1

Q ss_pred             CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842           1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL   77 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~   77 (95)
                      ++|+|+|+||+|+|+ +++++..   +.++||+||++++|++++.++.....+  +.|++||+|.+.+++++++.|+||+
T Consensus        55 l~~~W~D~rL~w~~~-~~~~i~~l~v~~~~IW~PDi~~~N~~~~~~~~~~~~~--~~v~~~G~V~~~~~~~~~~~C~mdl  131 (370)
T 2bg9_E           55 IEIQWNDYRLSWNTS-EYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYAN--VLVYNDGSMYWLPPAIYRSTCPIAV  131 (370)
T ss_dssp             EEEEEECGGGCCCTT-TTTTCSCBCCCGGGSCCCCEEESSSCCSCCBSSSSCC--CEECSSSEEEECCEEEEEECCCCSS
T ss_pred             EeeEEECCCcCCChh-hcCCeeEEeechhccCCCCEeeccccCCccccccccc--EEEECCccEEEecCEEEEEECcccc
Confidence            468999999999997 7766543   479999999999999998776555444  4689999999999999999999999


Q ss_pred             cccCCCCceeeeEEeecC
Q psy4842          78 KKFPFDEQECPLVLESCK   95 (95)
Q Consensus        78 ~~fPfD~q~C~l~~~S~~   95 (95)
                      ++||||+|+|+++||||+
T Consensus       132 ~~FPfD~Q~C~l~f~S~~  149 (370)
T 2bg9_E          132 TYFPFDWQNCSLVFRSQT  149 (370)
T ss_dssp             CSSSSSCCBCCEEEEESS
T ss_pred             cCCCCCeEEEEEEEEeec
Confidence            999999999999999985

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...

Probab=99.97  E-value=2.9e-31  Score=175.64  Aligned_cols=90  Identities=29%  Similarity=0.529  Sum_probs=79.5

Q ss_pred             CceEEeCCCcccCCCCccc--ccccccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccCc
Q psy4842           1 MRYRWVDPRLAHNAKENYL--GEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNLK   78 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~--~~~~~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~~   78 (95)
                      ++|+|+|+||+|||+ +++  .+..+.++||+||++++|++++.    ...+..++|++||+|.+..+++.++.|+||++
T Consensus        47 l~~~W~D~rL~w~~~-~~~i~~~~~~~~~IW~PDi~l~N~~~~~----~~~~~~~~v~~~G~V~~~~~~~~~~~C~~dl~  121 (321)
T 3tlw_A           47 LSLSWKDRRLAFDPV-RSGVRVKTYEPEAIWIPEIRFVNVENAR----DADVVDISVSPDGTVQYLERFSARVLSPLDFR  121 (321)
T ss_dssp             EEEEEECGGGCCCST-TTCCSSEECCGGGSCCCCEEESSBSSCC----EEEEEEEEECTTCEEEEEEEEEEEEECCCCCT
T ss_pred             EeeEEECcccCCCCc-cCCeeeecccccCeEcCcEEeecccccc----cccceeEEEeCCccEEEecceEEEEEEEeecc
Confidence            478999999999997 554  33445899999999999998876    34566789999999999999999999999999


Q ss_pred             ccCCCCceeeeEEeecC
Q psy4842          79 KFPFDEQECPLVLESCK   95 (95)
Q Consensus        79 ~fPfD~q~C~l~~~S~~   95 (95)
                      +||||+|+|+++|+||+
T Consensus       122 ~FPfD~Q~C~l~f~S~~  138 (321)
T 3tlw_A          122 RYPFDSQTLHIYLIVRS  138 (321)
T ss_dssp             TTTSCEEEEEEEEEEEC
T ss_pred             cCCCCceeEeEEEeccc
Confidence            99999999999999985

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A

Probab=99.97  E-value=2.9e-31  Score=182.67  Aligned_cols=92  Identities=27%  Similarity=0.527  Sum_probs=81.3

Q ss_pred             CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842           1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL   77 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~   77 (95)
                      ++|+|+|+||+|||+ +++++..   +.++||+||++++|++++.++.....  .++|++||+|.|.+++++++.|+||+
T Consensus        80 l~~~W~D~rL~Wnp~-~y~gi~~l~vp~~~IW~PDi~l~N~~d~~~~~~~~~--~v~v~~dG~V~~~~~~~~~s~C~mdl  156 (461)
T 4aq5_A           80 LRQQWIDVRLRWNPA-DYGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVHMT--KLLLDYTGKIMWTPPAIFKSYCEIIV  156 (461)
T ss_dssp             EEEEECCTTCBCCTT-THHHHSSEEEEGGGSCCCCEEESSCCCSCCTTCSSC--EEEECSBCCEEECCEEEEEEECCCCG
T ss_pred             EeeeeECcccCCChh-hcCCccEEEecCCCEECCceeeeccccccccccccc--ceEEcCCccEEEeccccccccccccc
Confidence            468999999999997 7776554   47999999999999999877654333  37899999999999999999999999


Q ss_pred             cccCCCCceeeeEEeecC
Q psy4842          78 KKFPFDEQECPLVLESCK   95 (95)
Q Consensus        78 ~~fPfD~q~C~l~~~S~~   95 (95)
                      ++||||+|+|+++|+||+
T Consensus       157 ~~FPfD~Q~C~l~f~S~~  174 (461)
T 4aq5_A          157 THFPFDQQNCTMKLGIWT  174 (461)
T ss_dssp             GGSSSSCEEEEEEEEESS
T ss_pred             cCCCCccCccCeEEeccc
Confidence            999999999999999995

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C

Probab=99.97  E-value=1e-30  Score=182.10  Aligned_cols=92  Identities=28%  Similarity=0.471  Sum_probs=81.6

Q ss_pred             CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842           1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL   77 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~   77 (95)
                      ++|+|+|+||+||++ +++++..   +.++||+||++++|++++.++.....+  +.|++||+|.|.+++++++.|+||+
T Consensus        79 l~q~W~D~RL~Wnp~-~y~gi~~l~vp~~~IW~PDi~l~N~~d~~~~~~~~~n--v~V~~dG~V~~~~~~~~~ssC~mdl  155 (522)
T 4aq5_C           79 MDHAWYDHRLTWNAS-EYSDISILRLRPELIWIPDIVLQNNNDGQYNVAYFCN--VLVRPNGYVTWLPPAIFRSSCPINV  155 (522)
T ss_dssp             EEEEEECTTCCCCCC-CCCTCSCEEECGGGSCCCCEEETTTCSSCCBSCSSCC--EEECSSSEEEECCEEEEEECCCCTT
T ss_pred             EeeeEeCcccCCCch-hcCCceEEeeccCCEECCcEeccccccCCccccccce--EEEeCCccEEEEccccccccccccc
Confidence            468999999999997 7766554   479999999999999998776655555  5699999999999999999999999


Q ss_pred             cccCCCCceeeeEEeecC
Q psy4842          78 KKFPFDEQECPLVLESCK   95 (95)
Q Consensus        78 ~~fPfD~q~C~l~~~S~~   95 (95)
                      ++||||+|+|+|+|+||+
T Consensus       156 ~~FPfD~Q~C~L~f~S~~  173 (522)
T 4aq5_C          156 LYFPFDWQNCSLKFTALN  173 (522)
T ss_dssp             TSCSTTCCEEEEEEEETT
T ss_pred             CcCCCcCceEeEEEeccc
Confidence            999999999999999996

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B

Probab=99.96  E-value=1.6e-30  Score=180.22  Aligned_cols=92  Identities=28%  Similarity=0.526  Sum_probs=81.7

Q ss_pred             CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842           1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL   77 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~   77 (95)
                      ++|+|+|+||+|||+ +++++..   +.++||+||++++|++++.++.....+  +.|++||+|.|.+++++++.|+||+
T Consensus        80 l~~~W~D~rL~Wnp~-~y~gi~~l~v~~~~IW~PDi~l~N~~d~~~~~~~~~n--v~v~~~G~V~~~~~~~~~s~C~mdl  156 (493)
T 4aq5_B           80 LNLAWTDYRLQWDPA-AYEGIKDLSIPSDDVWQPDIVLMNNNDGSFEITLHVN--VLVQHTGAVSWHPSAIYRSSCTIKV  156 (493)
T ss_dssp             CEEEEECTTCCCCHH-HHSSCSCEEECSCSSCCCCCEESSCCCSCEESSSSSC--EEECTTSEEEECCEEEEEECCSCTT
T ss_pred             eecceECcccCCChh-hcCCeeEEecccccCccCcEEEecccccccccccccc--eEEecCCCEEEeeeeeeeecccccc
Confidence            578999999999996 6666554   479999999999999998877655554  5699999999999999999999999


Q ss_pred             cccCCCCceeeeEEeecC
Q psy4842          78 KKFPFDEQECPLVLESCK   95 (95)
Q Consensus        78 ~~fPfD~q~C~l~~~S~~   95 (95)
                      ++||||+|+|+|+|+||+
T Consensus       157 ~~FPfD~Q~C~l~f~S~~  174 (493)
T 4aq5_B          157 MYFPFDWQNCTMVFKSYT  174 (493)
T ss_dssp             CSSSTTCCCCEEEEECSS
T ss_pred             cCCCccceeEEEEEeeec
Confidence            999999999999999985

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E

Probab=99.96  E-value=7e-31  Score=181.77  Aligned_cols=92  Identities=27%  Similarity=0.463  Sum_probs=81.5

Q ss_pred             CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842           1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL   77 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~   77 (95)
                      ++|+|+|+||+||++ +++++..   +.++||+||++++|++++.++.....+  +.|++||+|.|.+++++++.|+||+
T Consensus        55 l~~~W~D~rL~Wnp~-~y~gi~~l~v~~~~IW~PDi~l~N~~d~~~~~~~~~n--v~v~~~G~V~~~~~~~~~s~C~mdl  131 (488)
T 4aq5_E           55 IEIQWNDYRLSWNTS-EYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYAN--VLVYNDGSMYWLPPAIYRSTCPIAV  131 (488)
T ss_dssp             EEEEEECCTTCCCTT-TTTTCSCCCCCTTSSCCCCEECSSSCCSCCBSCSSSC--CCBCTTSEEEECCEEBCEECCCCSS
T ss_pred             eeeEEECcccCcCch-hcCCceEEecCccCEECCceehhcccccccccccccc--EEEeCCceEEEecceeEEeeccccc
Confidence            468999999999997 7776554   479999999999999998776655555  4589999999999999999999999


Q ss_pred             cccCCCCceeeeEEeecC
Q psy4842          78 KKFPFDEQECPLVLESCK   95 (95)
Q Consensus        78 ~~fPfD~q~C~l~~~S~~   95 (95)
                      ++||||+|+|+|+|+||+
T Consensus       132 ~~FPfD~Q~C~l~f~S~~  149 (488)
T 4aq5_E          132 TYFPFDWQNCSLVFRSQT  149 (488)
T ss_dssp             SSSSSSCCCCCEEEEESS
T ss_pred             ccCCCcCceeeEEeeeec
Confidence            999999999999999995

>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}

Probab=99.96  E-value=6.2e-30  Score=160.28  Aligned_cols=89  Identities=19%  Similarity=0.354  Sum_probs=77.7

Q ss_pred             CceEEeCCCc-ccCCCCcccccccccCceeecceEEeec-ccceeeccCcceeEEEEcCCCeEEEeecceEEEEecc-cC
Q psy4842           1 MRYRWVDPRL-AHNAKENYLGEINLRDRVWTPHLYLVNE-HDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLM-NL   77 (95)
Q Consensus         1 l~~~W~D~rL-~w~~~~~~~~~~~~~~~iW~P~i~~~n~-~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~-d~   77 (95)
                      ++|.|.|+|| +|+|++++..+..+.++||+||++++|+ +++.++..    ..++|++||+|.|.+++++++.|+| |+
T Consensus        52 ~~~~W~D~rL~~w~~~~~i~~~~~~~~~iW~PDi~~~N~~~~~~~~~~----~~v~i~~~G~V~~~~~~~~~~~C~m~dl  127 (203)
T 2bj0_A           52 TQASWKVPYYSSLLSSSSLDQVSLPVSKMWTPDLSFYNAIAAPELLSA----DRVVVSKDGSVIYVPSQRVRFTCDLINV  127 (203)
T ss_dssp             EEEEEECGGGGGGTTTSSCSEEEEEGGGSCCCCEEETTCSSCCEECSC----CEEEEETTSEEEECCEEEEEEECCCTTT
T ss_pred             EEeEEECcchhccCccCCceEEEEchhhccCCCccccccccccccccc----eEEEEeCCcEEEEecceEEEEEcccccc
Confidence            4689999999 9999732333444579999999999999 88877654    5588999999999999999999999 99


Q ss_pred             cccCCCCceeeeEEeecC
Q psy4842          78 KKFPFDEQECPLVLESCK   95 (95)
Q Consensus        78 ~~fPfD~q~C~l~~~S~~   95 (95)
                      ++  ||+|+|+|+||||+
T Consensus       128 ~~--fD~Q~C~l~f~S~~  143 (203)
T 2bj0_A          128 DT--EPGATCRIKVGSWT  143 (203)
T ss_dssp             TS--SSCEEEEEEEEESS
T ss_pred             Cc--cccceeeEEEEccc
Confidence            98  99999999999996

>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*

Probab=99.96  E-value=6.4e-30  Score=162.85  Aligned_cols=87  Identities=24%  Similarity=0.397  Sum_probs=75.9

Q ss_pred             CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842           1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL   77 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~   77 (95)
                      ++|.|+|+||+|+|+ +++++..   +.++||+||++++|++++.++....  ..++|++||+|.|.+++++++.|+|  
T Consensus        65 l~~~W~D~rL~wnp~-~~~~i~~i~l~~~~IW~PDi~l~N~~~~~~~~~~~--~~v~v~~~G~V~~~~~~~~~s~C~m--  139 (230)
T 4afh_A           65 VKLSWVDTILRWDPE-PPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRT--TQAIVFSNGTVLWIPPAVLKVLCVS--  139 (230)
T ss_dssp             EEEEEECGGGCCCCC-TTSCCSEEEECGGGSCCCCEEETTCSSSSCEECTT--SCEEEETTSEEEECCEEEEEEEEEE--
T ss_pred             EeeEEECccccCCcc-cCCCeeEEEeccCCEECCcEEEEeccccccccccc--ceEEEEcCCEEEEecCEEEEEECCC--
Confidence            468999999999997 7776654   4799999999999999987765333  3478999999999999999999999  


Q ss_pred             cccCCCCceeeeEEeecC
Q psy4842          78 KKFPFDEQECPLVLESCK   95 (95)
Q Consensus        78 ~~fPfD~q~C~l~~~S~~   95 (95)
                         |||+|+|+|+||||+
T Consensus       140 ---PfD~Q~C~l~f~S~~  154 (230)
T 4afh_A          140 ---QDDVDSCHFQFGSWV  154 (230)
T ss_dssp             ---ETTEEEEEEEEEESS
T ss_pred             ---CCCcccCCEeecccc
Confidence               999999999999996

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*

Probab=99.96  E-value=4.3e-29  Score=165.30  Aligned_cols=91  Identities=24%  Similarity=0.417  Sum_probs=77.9

Q ss_pred             CceEEeCCCcccCCCCcccc-----cccccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecc
Q psy4842           1 MRYRWVDPRLAHNAKENYLG-----EINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLM   75 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~-----~~~~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~   75 (95)
                      ++|+|+|+||+|+..+.+..     +..+.++||+||++++|++++..    ..+..++|++||+|.+..+++.++.|+|
T Consensus        39 l~~~W~D~rL~~~~~~~l~l~~~~~~~ip~~~IW~Pdi~l~N~~~~~~----~~~~~~~i~~~G~V~~~~~~~~~~~C~~  114 (322)
T 3rqw_A           39 IVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGSPD----TGNKRLMLFPDGRVIYNARFLGSFSNDM  114 (322)
T ss_dssp             EEEEEECSCCCCSTTSCEEEETHHHHHHHHTTCCCCCEEETTBSSCCE----EEEEEEEECTTSEEEEEEEEEEEEECCC
T ss_pred             EeeEEechhhCCCCCCceeecchhhcccccccccCCcEEEEcccCccc----ccceeEEEeCCcCEEEeeceeEEEeccc
Confidence            47899999999965422211     13348999999999999998876    4566789999999999999999999999


Q ss_pred             cCcccCCCCceeeeEEeecC
Q psy4842          76 NLKKFPFDEQECPLVLESCK   95 (95)
Q Consensus        76 d~~~fPfD~q~C~l~~~S~~   95 (95)
                      |+++||||+|+|+++|+||+
T Consensus       115 dl~~FPfD~Q~C~l~f~S~~  134 (322)
T 3rqw_A          115 DFRLFPFDRQQFVLELEPFS  134 (322)
T ss_dssp             CCTTTTSCEEEEEEEEEESS
T ss_pred             cccCCCCCCcEEEEEEEEcc
Confidence            99999999999999999985

>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...

Probab=99.95  E-value=5.4e-29  Score=158.38  Aligned_cols=87  Identities=17%  Similarity=0.366  Sum_probs=78.1

Q ss_pred             CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEec---
Q psy4842           1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCL---   74 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~---   74 (95)
                      ++|.|+|+||+|+|+ +++++..   +.++||+||++++|++++.++..   +..++|++||+|.|.+++++++.|+   
T Consensus        65 l~~~W~D~rL~w~~~-~y~~i~~l~~~~~~IW~PDi~l~N~~~~~~~~~---~~~v~i~~~G~V~~~~~~~~~~~C~~~~  140 (228)
T 2wn9_A           65 EQQRWKLNSLMWDPN-EYGNITDFRTSAADIWTPDITAYSSTRPVQVLS---PQIAVVTHDGSVMFIPAQRLSFMCDPTG  140 (228)
T ss_dssp             EEEEEEEEEEECCGG-GGTTCCEEEEEGGGSCCCCEEESSBSSCCEECS---CCEEEEETEEEEEECCEEEEEEECCCTT
T ss_pred             EEEEEECCCccCCch-hcCCeeEEEecHHHccCCceecccccccccccc---cceEEEeCCeEEEEeCCEEEEEECCCCC
Confidence            478999999999997 7776654   47999999999999999877654   6678999999999999999999999   


Q ss_pred             ccCcccCCCCceeeeEEeecC
Q psy4842          75 MNLKKFPFDEQECPLVLESCK   95 (95)
Q Consensus        75 ~d~~~fPfD~q~C~l~~~S~~   95 (95)
                      ||++    |+|+|+|+||||+
T Consensus       141 mdl~----D~Q~C~l~f~Sw~  157 (228)
T 2wn9_A          141 VDSE----EGATCAVKFGSWV  157 (228)
T ss_dssp             TTST----TCEEEEEEEEESS
T ss_pred             CCCC----cCcEeeEEEEeec
Confidence            9999    9999999999996

>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*

Probab=99.95  E-value=6.2e-28  Score=151.93  Aligned_cols=87  Identities=22%  Similarity=0.336  Sum_probs=75.4

Q ss_pred             CceEEeCCCcccCCCCcccc-cccccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEec---cc
Q psy4842           1 MRYRWVDPRLAHNAKENYLG-EINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCL---MN   76 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~-~~~~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~---~d   76 (95)
                      ++|.|+|+||+|+|+ ++++ +..+.++||+||++++|++++. . .... ..++|++||+|.+.+++++++.|+   ||
T Consensus        55 ~~~~W~D~rL~w~~~-~~~~~l~~~~~~iW~PDi~~~N~~~~~-~-~~~~-~~~~i~~~G~V~~~~~~~~~~~C~~~~md  130 (211)
T 1uw6_A           55 QQTTWSDRTLAWNSS-HSPDQVSVPISSLWVPDLAAYNAISKP-E-VLTP-QLARVVSDGEVLYMPSIRQRFSCDVSGVD  130 (211)
T ss_dssp             EEEEEECGGGCCCCT-TSCSEEEEEGGGSCCCCEEETTBCSCC-E-ECSC-CEEEEETTSEEEECCEEEEEEECCCTTTT
T ss_pred             EEeEeECcccccChh-hcCCeEEccHHHccCCCEeeecccccc-c-ccee-eEEEEeCCceEEEeCCEEEEEECCCCCCC
Confidence            468999999999997 6665 3334799999999999999886 3 2223 668999999999999999999999   99


Q ss_pred             CcccCCCCceeeeEEeecC
Q psy4842          77 LKKFPFDEQECPLVLESCK   95 (95)
Q Consensus        77 ~~~fPfD~q~C~l~~~S~~   95 (95)
                      ++    |+|+|+|+||||+
T Consensus       131 l~----D~Q~C~l~f~S~~  145 (211)
T 1uw6_A          131 TE----SGATCRIKIGSWT  145 (211)
T ss_dssp             SS----SCEEEEEEEEESS
T ss_pred             CC----cceEeEEEEEccc
Confidence            99    9999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	95
d1uw6a_	208	b.96.1.1 (A:) Acetylcholine binding protein (ACHBP	6e-09

>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Length = 208

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

 Score = 48.6 bits (115), Expect = 6e-09
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 4/93 (4%)

Query: 1   MRYRWVDPRLAHNAKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGT 60
            +  W D  LA N+  +          +W P L   N      + + +   L  V  DG 
Sbjct: 55  QQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQ---LARVVSDGE 111

Query: 61  VLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
           VLY   ++    C ++          C + + S
Sbjct: 112 VLYMPSIRQRFSCDVSGVDTESG-ATCRIKIGS 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	95
d1uw6a_	208	Acetylcholine binding protein (ACHBP) {Great pond	99.96

>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]}

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

Probab=99.96  E-value=3.1e-29  Score=156.14  Aligned_cols=90  Identities=21%  Similarity=0.327  Sum_probs=75.8

Q ss_pred             CceEEeCCCcccCCCCcccccc-cccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccCcc
Q psy4842           1 MRYRWVDPRLAHNAKENYLGEI-NLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNLKK   79 (95)
Q Consensus         1 l~~~W~D~rL~w~~~~~~~~~~-~~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~~~   79 (95)
                      ++|+|+|+||+|||+ ++.++. .+.++||+||++++|+++.....   ....+.|++||+|.|..++++++.|.|++..
T Consensus        55 ~~~~W~D~rL~Wnp~-~~~~~~~v~~~~iW~PDi~l~n~~~~~~~~---~~~~~~v~~~G~V~~~~~~~~~~~C~~~~~~  130 (208)
T d1uw6a_          55 QQTTWSDRTLAWNSS-HSPDQVSVPISSLWVPDLAAYNAISKPEVL---TPQLARVVSDGEVLYMPSIRQRFSCDVSGVD  130 (208)
T ss_dssp             EEEEEECGGGCCCCT-TSCSEEEEEGGGSCCCCEEETTBCSCCEEC---SCCEEEEETTSEEEECCEEEEEEECCCTTTT
T ss_pred             EEEEEECCccccccc-cCCceeccchhccccccEEEEEEccccccc---cceEEEEEeCCcEEEEecEEEEEeccccccC
Confidence            478999999999997 555543 34789999999999988765432   2345789999999999999999999999877


Q ss_pred             cCCCCceeeeEEeecC
Q psy4842          80 FPFDEQECPLVLESCK   95 (95)
Q Consensus        80 fPfD~q~C~l~~~S~~   95 (95)
                      || |+|+|.|+||||+
T Consensus       131 f~-d~Q~C~l~fgSw~  145 (208)
T d1uw6a_         131 TE-SGATCRIKIGSWT  145 (208)
T ss_dssp             SS-SCEEEEEEEEESS
T ss_pred             Cc-ceEEEEEEEeCce
Confidence            77 8999999999996