Psyllid ID: psy4844

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
Protein Sequence
MTYHVVQSSVWLVMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLLLDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEGYISTLSNGEPLLDKLSKKEAVVETSVKDSLYPLHATPSEIHAGIKNQSLLQGMNLYLL
Secondary Structure (PSIPRED)
cccEEEEcccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEEcHHHHHHHHHHHcccccccEEEHHHHHHHHHcccHHHHHHHHHHHccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHccccEEEHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccccEEEEEEEHEcccccccccHHHHHcccccccccccccccccccccccccccccccccEEEEccHHHHHHHHHHHccHHHHcEEEHHHHHHHHHHccHHHHHHHHHHHccccccEEEEEcccccccEEEcccccccccccHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHcccEEEEHHHHHHHccccHHHHHHHHccccccccccccccccccccHHHHHHHcccccEEEEEEEEEc
Coil and Loop (DISEMBL)
MTYHVVQSSVWLVMKIVREHYLrddlscgselclacdtkeaildkiptsskaildkiptssskkymephylllDTNIIleqidileeptlCNVILVQTILQEVKHRSSSVYKRLKDlisnpsrkfYVFVNEHHYetyveqepgesvndrNDRALRRVATWYEEHLESAVRVILLSEdvrnrdlatqsgllTSSIEGYIStlsngeplldklskKEAVVETsvkdslyplhatpseihagIKNQSLLQGMNLYLL
Flexible Loop (DISEMBL)
MTYHVVQSSVWLVMKIVREHYLRDDLSCGSELCLACDTKEAildkiptsskaildkiptssskkymepHYLLLDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVykrlkdlisnpsrKFYVFVNEHHYEtyveqepgesvndrnDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATqsglltssIEGYISTLSNGEPLLDKLSKKEAVVETSVKDslyplhatpseihagiknqSLLQGMNLYLL
Low Complexity Region (SEG)
MTYHVVQSSVWLVMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLLLDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEGYISTLSNGEPLLDKLSKKEAVVETSVKDSLYPLHATPSEIHAGIKNQSLLQGMNLYLL
Disordered region (IsUnstruct)
**YHVVQSSVWLVMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKI******KYMEPHYLLLDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEHHYETYVE************RALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEGYISTLS**********************SLYPLH*****IHAGI**************
Disordered Region (DISOPRED)
*TYHVVQSSVWLVMKIVREHYLRDDLSCGSELCLACDTKEA**********************KYMEPHYLLLDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEHHYETYV**********RNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEGYISTLSNGEPLL********************LHATPSEIHAGIKNQSLLQGMNLYLL
Disordered Region (DISEMBL)
MTYHVVQSSVWLVMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLLLDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEHHYETY***********RNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEGYISTLSNGEPLLDKLSKKEAVVETSVKDSLYPLHATPSEIHAGIKNQSLLQGMNLYLL
Disordered Region (DISPRO)
MTYHVVQSSVWLVMKIVREHYLRDDLSCGSELCLACDT***********************SKKYMEPHYLLLDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEGYISTLSNGEPLLDKLSKKEA******KDSLYPLHATPSEIHAGIKNQSLLQGMNLYLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTYHVVQSSVWLVMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLLLDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEGYISTLSNGEPLLDKLSKKEAVVETSVKDSLYPLHATPSEIHAGIKNQSLLQGMNLYLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	254	2.2.26 [Sep-21-2011]
Q9Y2L1	958	Exosome complex exonuclea	yes	N/A	0.897	0.237	0.433	2e-52
Q9CSH3	958	Exosome complex exonuclea	yes	N/A	0.897	0.237	0.429	8e-52
Q08162	1001	Exosome complex exonuclea	yes	N/A	0.948	0.240	0.366	1e-36
P37202	970	Exosome complex exonuclea	yes	N/A	0.929	0.243	0.359	8e-36
A2RV18	1057	DIS3-like exonuclease 1 O	no	N/A	0.838	0.201	0.279	2e-20
Q0P4R5	1039	DIS3-like exonuclease 1 O	no	N/A	0.850	0.207	0.288	1e-19
Q8C0S1	1053	DIS3-like exonuclease 1 O	no	N/A	0.850	0.205	0.269	3e-18
Q5U2P0	1054	DIS3-like exonuclease 1 O	no	N/A	0.846	0.203	0.264	2e-17
Q5R5N8	1054	DIS3-like exonuclease 1 O	yes	N/A	0.846	0.203	0.268	3e-17
A0JN80	1053	DIS3-like exonuclease 1 O	no	N/A	0.858	0.207	0.261	3e-17

>sp|Q9Y2L1|RRP44_HUMAN Exosome complex exonuclease RRP44 OS=Homo sapiens GN=DIS3 PE=1 SV=2

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/242 (43%), Positives = 152/242 (62%), Gaps = 14/242 (5%)

Query: 13  VMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLL 72
           VMKIVREHYLRDD+ CG+  C AC               A+  +    +S    +PHYLL
Sbjct: 16  VMKIVREHYLRDDIGCGAPGCAACGGAH--------EGPALEPQPQDPASSVCPQPHYLL 67

Query: 73  LDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEH 132
            DTN++L QID+LE+P + NVI++QT+LQEV++RS+ VYKR++D+ +N  + FY F NEH
Sbjct: 68  PDTNVLLHQIDVLEDPAIRNVIVLQTVLQEVRNRSAPVYKRIRDVTNNQEKHFYTFTNEH 127

Query: 133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHL-----ESAVRVILLSEDVRNRDLATQS 187
           H ETYVEQE GE+ NDRNDRA+R  A WY EHL     ++ ++VI ++ D RN++ A + 
Sbjct: 128 HRETYVEQEQGENANDRNDRAIRVAAKWYNEHLKKMSADNQLQVIFITNDRRNKEKAIEE 187

Query: 188 GLLTSSIEGYISTLSNGEPLLDKLSK-KEAVVETSVKDSLYPLHATPSEIHAGIKNQSLL 246
           G+   + E Y+ +L+    L+D+L+   E   E      ++  H   S++  GIK+ + L
Sbjct: 188 GIPAFTCEEYVKSLTANPELIDRLACLSEEGNEIESGKIIFSEHLPLSKLQQGIKSGTYL 247

Query: 247 QG 248
           QG
Sbjct: 248 QG 249

Putative catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and promoter-upstream transcripts (PROMPTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. The RNA exosome may be involved in Ig class switch recombination (CSR) and/or Ig variable region somatic hypermutation (SHM) by targeting AICDA deamination activity to transcribed dsDNA substrates. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant mRNAs. It seems to be involved in degradation of histone mRNA. DIS3 has both 3'-5' exonuclease and endonuclease activities.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: -

>sp|Q9CSH3|RRP44_MOUSE Exosome complex exonuclease RRP44 OS=Mus musculus GN=Dis3 PE=2 SV=4

 Score =  203 bits (517), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 104/242 (42%), Positives = 153/242 (63%), Gaps = 14/242 (5%)

Query: 13  VMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLL 72
           V+KIVREHYLRDD+ CG+  C AC    A          A+  +    +S     PHYLL
Sbjct: 16  VVKIVREHYLRDDIGCGAPACSACGGAHA--------GPALELQPRDQASSLCPWPHYLL 67

Query: 73  LDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEH 132
            DTN++L QID+LE P + NVI++QT++QEV++RS+ +YKR++D+ +N  + FY F NEH
Sbjct: 68  PDTNVLLHQIDVLEHPAIRNVIVLQTVMQEVRNRSAPIYKRIRDVTNNQEKHFYTFTNEH 127

Query: 133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHL-----ESAVRVILLSEDVRNRDLATQS 187
           H ETY+EQE GE+ NDRNDRA+R  A WY EHL     +S ++VIL++ D +N++ A Q 
Sbjct: 128 HKETYIEQEQGENANDRNDRAIRVAAKWYNEHLKRVAADSQLQVILITNDRKNKEKAVQE 187

Query: 188 GLLTSSIEGYISTLSNGEPLLDKLSK-KEAVVETSVKDSLYPLHATPSEIHAGIKNQSLL 246
           G+   + E Y+ +L+    L+D+L+   + + E      ++  H   S++  GIK+ S L
Sbjct: 188 GIPAFTCEEYVKSLTANPELIDRLAYLSDEMNEIESGKIIFSEHLPLSKLQQGIKSGSYL 247

Query: 247 QG 248
           QG
Sbjct: 248 QG 249

Putative catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and promoter-upstream transcripts (PROMPTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. The RNA exosome may be involved in Ig class switch recombination (CSR) and/or Ig variable region somatic hypermutation (SHM) by targeting AICDA deamination activity to transcribed dsDNA substrates. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant mRNAs. It seems to be involved in degradation of histone mRNA. DIS3 has both 3'-5' exonuclease and endonuclease activities.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|Q08162|RRP44_YEAST Exosome complex exonuclease DIS3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DIS3 PE=1 SV=1

 Score =  152 bits (385), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/254 (36%), Positives = 145/254 (57%), Gaps = 13/254 (5%)

Query: 6   VQSSVWLVMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKY 65
           V+S      KIVREHYLR D+ C S  C  C  +  + D      K IL   P   S   
Sbjct: 25  VRSRNGGATKIVREHYLRSDIPCLSRSCTKC-PQIVVPDAQNELPKFILSDSPLELSAP- 82

Query: 66  MEPHYLLLDTNIILEQIDILEEPT-LCNVILVQTILQEVKHRSSSVYKRLKDLI--SNPS 122
           +  HY++LDTN++L+ ID+LE P    +VI+ Q +L EV+++S  VY RL+ L   S+  
Sbjct: 83  IGKHYVVLDTNVVLQAIDLLENPNCFFDVIVPQIVLDEVRNKSYPVYTRLRTLCRDSDDH 142

Query: 123 RKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLES-AVRVILLSEDVRNR 181
           ++F VF NE    T+VE+ P E++NDRNDRA+R+   WY EHL+   + V+L++ D  NR
Sbjct: 143 KRFIVFHNEFSEHTFVERLPNETINDRNDRAIRKTCQWYSEHLKPYDINVVLVTNDRLNR 202

Query: 182 DLAT---QSGLLTSSIEGYISTLSNGEPLLDKLSKKEAVVETSVKDSL----YPLHATPS 234
           + AT   +S ++T S+  YI  L N + + D + + ++  +   +D+     +P + + +
Sbjct: 203 EAATKEVESNIITKSLVQYIELLPNADDIRDSIPQMDSFDKDLERDTFSDFTFPEYYSTA 262

Query: 235 EIHAGIKNQSLLQG 248
            +  G+KN  L QG
Sbjct: 263 RVMGGLKNGVLYQG 276

Catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and cryptic unstable transcripts (CUTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and in RNA surveillance pathways, preventing translation of aberrant mRNAs. The catalytic inactive RNA exosome core complex of 9 subunits (Exo-9) is proposed to play a pivotal role in the binding and presentation of RNA for ribonucleolysis, and to serve as a scaffold for the association with catalytic subunits and accessory proteins or complexes. DIS3 has both 3'-5' exonuclease and endonuclease activities. The exonuclease activity of DIS3 is down-regulated upon association with Exo-9 possibly involving a conformational change in the catalytic domain and threading of the RNA substrate through the complex central channel. Structured substrates can be degraded if they have a 3' single-stranded extension sufficiently long (such as 35 nt poly(A)) to span the proposed complex inner RNA-binding path and to reach the exonuclease site provided by DIS3. Plays a role in mitotic control.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|P37202|DIS3_SCHPO Exosome complex exonuclease dis3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dis3 PE=1 SV=1

 Score =  150 bits (379), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 92/256 (35%), Positives = 148/256 (57%), Gaps = 20/256 (7%)

Query: 6   VQSSVWLVMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKA-ILDKIPTSSSKK 64
           V+++   V K+VRE YLR+D+ C S  C  C +K      +P  S+  +L+ I  S    
Sbjct: 23  VRATRGKVQKVVREQYLRNDIPCQSRACPLCRSK------LPKDSRGNVLEPI-LSEKPM 75

Query: 65  YMEP---HYLLLDTNIILEQIDILEEPT-LCNVILVQTILQEVKHRSSSVYKRLKDLISN 120
           ++E    HYL+ D+NI    ID LE P    +VI++QT+  E+  +S  +Y R+K L   
Sbjct: 76  FLEKFGHHYLIPDSNIFYHCIDALEHPNNFFDVIILQTVFSEISSKSIPLYNRMKRLCQE 135

Query: 121 PSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLES-AVRVILLSEDVR 179
            +++F  F NE   +T+VE+   ES NDRNDRA+R  A+W+  HL S  ++++LL++D  
Sbjct: 136 KTKRFTPFSNEFFVDTFVERLDDESANDRNDRAIRNAASWFASHLASLGIKIVLLTDDRE 195

Query: 180 NRDLATQSGLLTSSIEGYISTLSNGEPLLDKLSK-KEAV-----VETSVKDSLYPLHATP 233
           N  LA + G+  S+++ Y+  L + E LLD +S   +A+     VE+  K+ +Y LH + 
Sbjct: 196 NARLAAEQGIQVSTLKDYVQYLPDSEILLDMVSAIADAIASKEQVESGTKN-VYELHWSM 254

Query: 234 SEIHAGIKNQSLLQGM 249
           S + A IKN  + +G+
Sbjct: 255 SRLLACIKNGEVHKGL 270

Catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and cryptic unstable transcripts (CUTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and in RNA surveillance pathways, preventing translation of aberrant mRNAs. The catalytic inactive RNA exosome core complex of 9 subunits (Exo-9) is proposed to play a pivotal role in the binding and presentation of RNA for ribonucleolysis, and to serve as a scaffold for the association with catalytic subunits and accessory proteins or complexes. DIS3 has both 3'-5' exonuclease and endonuclease activities. The exonuclease activity of DIS3 is down-regulated upon association with Exo-9 possibly involving a conformational change in the catalytic domain and threading of the RNA substrate through the complex central channel. Structured substrates can be degraded if they have a 3' single-stranded extension sufficiently long (such as 35 nt poly(A)) to span the proposed complex inner RNA-binding path and to reach the exonuclease site provided by dis3 (By similarity). Implicated in mitotic control. Essential for cell division and spore germination. May be involved in regulating protein dephosphorylation during mitosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|A2RV18|DI3L1_DANRE DIS3-like exonuclease 1 OS=Danio rerio GN=dis3l PE=2 SV=1

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 34/247 (13%)

Query: 14  MKIVREHYLRDDLSCGSELCLA-CDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLL 72
           +++VREHY+R+ + CGS LC A C     +L +  T                    HY++
Sbjct: 18  VRVVREHYMREQVPCGSSLCQADCQNVGKVLSRDVT--------------------HYVV 57

Query: 73  LDTNIILEQIDILEEPTLCNVILVQTILQEVKH-RSSSVYKRLKDLISNPSRKFYVFVNE 131
            D  ++ + ++ILE   L  ++L QT  Q V+H R    Y RL+ L+ +P     +F NE
Sbjct: 58  PDVGVVRDFLEILELRELQGIVLTQTAYQTVQHTRGRRHYNRLRSLLKDPRHDCVLFANE 117

Query: 132 HHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDL-----ATQ 186
               +Y  +E GES +  + R +   A WY  HL     V++++ED   RD      A+ 
Sbjct: 118 FQQYSYCPREKGESQDKWHTRNVYNAAVWYYNHLAGLQPVVMITED---RDAISEFSASN 174

Query: 187 SGLLTSSIE----GYISTLSNGEPLLDKLSKKEAVVETSVKDSLYPLHATPSEIHAGIKN 242
           SG+   S +    G+   L     L   +++     E    + +Y  H     + AGIK+
Sbjct: 175 SGVFVISTQEYLLGFWPDLQAAHDLYHSIAQTLQERENDGAEKVYTEHLPAEVLEAGIKS 234

Query: 243 QSLLQGM 249
              +QG+
Sbjct: 235 GRYIQGI 241

Putative cytoplasm-specific catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q0P4R5|DI3L1_XENTR DIS3-like exonuclease 1 OS=Xenopus tropicalis GN=dis3l PE=2 SV=2

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 115/246 (46%), Gaps = 30/246 (12%)

Query: 14  MKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLLL 73
           ++ VREHYLR+D+ CGS LCL C          P   K + + +           HY++ 
Sbjct: 17  VRAVREHYLREDVRCGSALCLTC----------PRDGKLLSEDLT----------HYVVP 56

Query: 74  DTNIILEQIDILEEPTLCNVILVQTILQEVKH-RSSSVYKRLKDLISNPSRKFYVFVNEH 132
           D  I+ + +++LE P L  +I++QT  Q V+H R    YKRL  L+ +      +F NE 
Sbjct: 57  DCQILQDYLEVLEFPELRGIIIMQTACQSVQHQRGRRQYKRLCSLLRDTRHDCILFSNEF 116

Query: 133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSED---VRNRDLATQSGL 189
               Y+ +E GES      R +     WY +H +  + V++++ED   +R  +  TQ   
Sbjct: 117 QNHAYLPREMGESALAWQTRCIYNSCVWYYQHCQKKIPVVMVTEDKSVIRQYNTETQEVY 176

Query: 190 LTSS---IEGYISTLSNGEPLLDKL--SKKEAVVETSVKDSL-YPLHATPSEIHAGIKNQ 243
           + S    +E +   L     L   L  + +E  +E+   +   YP H     + AGIK+ 
Sbjct: 177 VVSFQIYLETFWPNLKGALELYKSLKETHRERELESREGNGKEYPEHLPLEILEAGIKSG 236

Query: 244 SLLQGM 249
              QG+
Sbjct: 237 RYQQGV 242

Putative cytoplasm-specific catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q8C0S1|DI3L1_MOUSE DIS3-like exonuclease 1 OS=Mus musculus GN=Dis3l PE=2 SV=2

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 112/249 (44%), Gaps = 33/249 (13%)

Query: 14  MKIVREHYLRDDLSCGSELC---LACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHY 70
           ++IVREHYLR  + C S LC    AC     +L    T                    HY
Sbjct: 19  LRIVREHYLRPSVPCNSPLCPQPAACRNDGKLLAAEVT--------------------HY 58

Query: 71  LLLDTNIILEQIDILEEPTLCNVILVQTILQEVKH-RSSSVYKRLKDLISNPSRKFYVFV 129
           ++ D  ++ + +++LE P L  VI +QT  Q V+H R    Y +L++L+ +      +F 
Sbjct: 59  VIPDWKVVQDYLEVLEFPELKGVIFMQTACQAVQHQRGRRQYNKLRNLLKDARHDCVLFA 118

Query: 130 NEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVR--NRDLATQS 187
           NE     Y+ +E GE++     R++   A WY  H E  + +++++ED     +  +   
Sbjct: 119 NEFQQHCYLPREKGEAMEKWQTRSIYNSAVWYYHHCEDRMPIVMVTEDEEAIQKYGSETE 178

Query: 188 GLLTSSIEGYIST----LSNGEPLLDKL--SKKEAVVETS-VKDSLYPLHATPSEIHAGI 240
           G+   S + Y+      L     L D +  S++E   E+       YP H     + AGI
Sbjct: 179 GVFVISFKNYLDNFWPDLKAAHDLCDSILQSRRERETESQETHGKEYPEHLPLEVLEAGI 238

Query: 241 KNQSLLQGM 249
           K+   +QG+
Sbjct: 239 KSGRYIQGI 247

Putative cytoplasm-specific catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant mRNAs. It seems to be involved in degradation of histone mRNA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q5U2P0|DI3L1_RAT DIS3-like exonuclease 1 OS=Rattus norvegicus GN=Dis3l PE=2 SV=2

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 113/250 (45%), Gaps = 35/250 (14%)

Query: 14  MKIVREHYLRDDLSCGSELC---LACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHY 70
           ++IVREHYLR  + C S LC     C     +L    T                    HY
Sbjct: 19  LRIVREHYLRPSVPCNSPLCPQPATCRNDGKLLSAEVT--------------------HY 58

Query: 71  LLLDTNIILEQIDILEEPTLCNVILVQTILQEVKH-RSSSVYKRLKDLISNPSRKFYVFV 129
           ++ D  ++ + +++LE P L  +I +QT  Q V+H R    Y +L++L+ +      +F 
Sbjct: 59  VIPDWKVVQDYLEVLEFPELKGIIFMQTACQAVQHQRGRRQYNKLRNLLKDARHDCVLFA 118

Query: 130 NEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSED---VRNRDLATQ 186
           NE     Y+ +E GE++     R++   A WY  H E  + +++++ED   ++     T+
Sbjct: 119 NEFQQHCYLPREKGEAMEKWQTRSIYNSAVWYYHHCEDRMPIVMVTEDEEAIQQYGSETE 178

Query: 187 SGLLTSSIEGYIST----LSNGEPLLDKL--SKKEAVVETS-VKDSLYPLHATPSEIHAG 239
            G+   S + Y+      L     L D +  S++E   E+       YP H     + AG
Sbjct: 179 -GVFVISFKNYLDNFWPDLKAAHELCDSIIQSRRERESESQETHGKEYPEHLPLEVLEAG 237

Query: 240 IKNQSLLQGM 249
           IK+   +QG+
Sbjct: 238 IKSGRYIQGI 247

Putative cytoplasm-specific catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant mRNAs. It seems to be involved in degradation of histone mRNA.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q5R5N8|DI3L1_PONAB DIS3-like exonuclease 1 OS=Pongo abelii GN=DIS3L PE=2 SV=1

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 113/250 (45%), Gaps = 35/250 (14%)

Query: 14  MKIVREHYLRDDLSCGSELC---LACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHY 70
           ++IVREHYLR  + C S LC    AC     +L    T                    HY
Sbjct: 19  LRIVREHYLRPCVPCHSPLCPQPAACSHDGKLLSNDVT--------------------HY 58

Query: 71  LLLDTNIILEQIDILEEPTLCNVILVQTILQEVKH-RSSSVYKRLKDLISNPSRKFYVFV 129
           ++ D  ++ + ++ILE P L  +I +QT  Q V+H R    Y +L++L+ +      +F 
Sbjct: 59  VIPDWKVVQDYLEILEFPELKGIIFMQTACQAVQHQRGRRQYNKLRNLLKDARHDCILFA 118

Query: 130 NEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSED---VRNRDLATQ 186
           NE     Y+ +E GES+     R++   A WY  H +  + +++++ED   ++     T+
Sbjct: 119 NEFQQCCYLPRERGESMEKWQTRSIYNAAVWYYHHCQDRMPIVMVTEDEEAIQQYGSETE 178

Query: 187 SGLLTSSIEGYIST----LSNGEPLLDKLSKKEAVVETSVKDSL---YPLHATPSEIHAG 239
            G+   S + Y+      L     L D + +     E   ++S    YP H     + AG
Sbjct: 179 -GVFVISFKNYLDNFWPDLKAAHELCDSILQSRRERENESQESHGKEYPEHLPLEVLEAG 237

Query: 240 IKNQSLLQGM 249
           IK+   +QG+
Sbjct: 238 IKSGRYIQGI 247

Putative cytoplasm-specific catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant mRNAs. It seems to be involved in degradation of histone mRNA.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|A0JN80|DI3L1_BOVIN DIS3-like exonuclease 1 OS=Bos taurus GN=DIS3L PE=2 SV=2

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 110/245 (44%), Gaps = 27/245 (11%)

Query: 14  MKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLLL 73
           ++IVREHYLR  + C S LC             P  +    D    SS       HY++ 
Sbjct: 19  LRIVREHYLRPSVPCNSPLC-------------PQPATCHNDGKLLSSDVT----HYMVP 61

Query: 74  DTNIILEQIDILEEPTLCNVILVQTILQEVKH-RSSSVYKRLKDLISNPSRKFYVFVNEH 132
           D  ++ + ++ILE P L  ++ +QT  Q V+H R    Y +L++L+ +      +F NE 
Sbjct: 62  DWKVVQDYLEILEFPELKGIVFMQTACQAVQHQRGRRQYNKLRNLLKDARHDCVLFANEF 121

Query: 133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVR--NRDLATQSGLL 190
               Y+ +E GES+     R++   A WY  H +  + +++++ED     +  +   G+ 
Sbjct: 122 QQSCYLPRERGESMEKWQSRSIYNAAAWYYHHCQDRMPIVMVTEDEEAIQQYGSETGGVF 181

Query: 191 TSSIEGYIST----LSNGEPLLDKLSKKEAVVETSVKDSL---YPLHATPSEIHAGIKNQ 243
             S + Y+      L     L + + +     E   ++S    YP H     + AGIK+ 
Sbjct: 182 VISFKNYLDNFWPDLKAAHELCESILQSRRERENESQESHGKEYPEHVPLEVLEAGIKSG 241

Query: 244 SLLQG 248
             +QG
Sbjct: 242 RYIQG 246

Putative cytoplasm-specific catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant mRNAs. It seems to be involved in degradation of histone mRNA.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
156553452	985	PREDICTED: exosome complex exonuclease R	0.901	0.232	0.504	4e-67
312379668	991	hypothetical protein AND_08402 [Anophele	0.897	0.230	0.548	2e-66
328786997	978	PREDICTED: exosome complex exonuclease R	0.885	0.230	0.539	6e-65
350401245	981	PREDICTED: exosome complex exonuclease R	0.885	0.229	0.539	1e-64
340720631	981	PREDICTED: exosome complex exonuclease R	0.877	0.227	0.539	1e-63
383860552	979	PREDICTED: exosome complex exonuclease R	0.885	0.229	0.535	3e-63
307199462	977	Exosome complex exonuclease RRP44 [Harpe	0.897	0.233	0.504	6e-63
380015637	971	PREDICTED: exosome complex exonuclease R	0.889	0.232	0.527	2e-61
119113846	967	AGAP005191-PA [Anopheles gambiae str. PE	0.885	0.232	0.495	2e-60
332019034	976	Exosome complex exonuclease RRP44 [Acrom	0.897	0.233	0.471	2e-59

>gi|156553452|ref|XP_001601829.1| PREDICTED: exosome complex exonuclease RRP44-like [Nasonia vitripennis]

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 123/244 (50%), Positives = 176/244 (72%), Gaps = 15/244 (6%)

Query: 13  VMKIVREHYLRDDLSCGSELCLACD--TKEAILDKIPTSSKAILDKIPTSSSKKYMEPHY 70
           + K+VREHYLRDD+ CGSE C  C    K+ +LD          D+ P + S  + +PHY
Sbjct: 16  IYKVVREHYLRDDIWCGSEACERCGRRNKDIMLD----------DENPGAKSSLFSQPHY 65

Query: 71  LLLDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVN 130
           L+ DTNIIL QI+ILEE  LCNVI+ QT+L+EV+HRSS+VYK+LK++I +PSRKFYVFVN
Sbjct: 66  LVFDTNIILNQINILEENILCNVIIPQTVLEEVRHRSSNVYKKLKEIIGDPSRKFYVFVN 125

Query: 131 EHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESA---VRVILLSEDVRNRDLATQS 187
           EHH +TY+E++PGE VNDRNDRA+R VA WY  HL +    ++ ILL++D  N++ A ++
Sbjct: 126 EHHKDTYIERKPGEIVNDRNDRAIRTVAKWYNSHLSAQKINIKAILLTDDEDNKNKAEEA 185

Query: 188 GLLTSSIEGYISTLSNGEPLLDKLSKKEAVVETSVKDSLYPLHATPSEIHAGIKNQSLLQ 247
           G+  ++++ Y+S+L N   L+DKL++K+ V++   ++ L+P H +PS++H GIKN   LQ
Sbjct: 186 GIPVATMKDYVSSLENAGFLVDKLARKDYVLDGEGREPLFPCHLSPSQLHEGIKNGKFLQ 245

Query: 248 GMNL 251
           G  L
Sbjct: 246 GTFL 249

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312379668|gb|EFR25868.1| hypothetical protein AND_08402 [Anopheles darlingi]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 135/246 (54%), Positives = 171/246 (69%), Gaps = 18/246 (7%)

Query: 13  VMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLL 72
           ++KIVREHYLRDD+ CGS  C  C   E         +  +LD +P S S++Y  PHYLL
Sbjct: 16  ILKIVREHYLRDDIWCGSGACRKCPLSE---------NDIVLDGVPESLSEQYAFPHYLL 66

Query: 73  LDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEH 132
           LDTNIIL Q+D+LEE  + NVI++ T+L EVKHRS+ +YKRLK +ISNPSRKFY FVNEH
Sbjct: 67  LDTNIILYQMDLLEESVVRNVIILNTVLDEVKHRSAVMYKRLKAVISNPSRKFYTFVNEH 126

Query: 133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHLES------AVRVILLSEDVRNRDLATQ 186
           H +TYVE+ PGES NDRNDR +R  A WYE+HL+S      ++R++LLS+DV NR+ A  
Sbjct: 127 HKDTYVERMPGESANDRNDRMIRMAAGWYEKHLKSTGPKGQSLRIVLLSDDVDNRNKAID 186

Query: 187 SGLLTSSIEGYISTL-SNGEPLLDKLSKKEAVVETSVKDSLYPLHATPSEIHAGIKNQSL 245
            GL+  S   YI T  S    LLDK+S++E   ET  K+ L+P H T S+IH GIKN+SL
Sbjct: 187 QGLIACSAADYIKTARSEYANLLDKISQREGSGET--KEPLFPSHLTASQIHQGIKNESL 244

Query: 246 LQGMNL 251
           LQG  L
Sbjct: 245 LQGAFL 250

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328786997|ref|XP_397381.4| PREDICTED: exosome complex exonuclease RRP44-like [Apis mellifera]

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 130/241 (53%), Positives = 165/241 (68%), Gaps = 16/241 (6%)

Query: 13  VMKIVREHYLRDDLSCGSELCLAC--DTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHY 70
           V K +REHYLR+D+ CGS++C  C    +  ILD   +  K            K MEPHY
Sbjct: 16  VFKTIREHYLRNDIHCGSKVCEKCIFRIQNVILDNEDSKIKNF----------KIMEPHY 65

Query: 71  LLLDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVN 130
           LL+DTNIIL+QIDILEE  LCN+I+VQT+L+EVKH+SS VYKRLK+LI+N  RKFYVF+N
Sbjct: 66  LLIDTNIILDQIDILEEDILCNIIIVQTVLEEVKHKSSLVYKRLKNLINNVHRKFYVFIN 125

Query: 131 EHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLE---SAVRVILLSEDVRNRDLATQS 187
           EHH ETY+E+ PGES+NDRNDRA+R  A WY  HL      ++ ILL++D +NR LA   
Sbjct: 126 EHHKETYIERNPGESINDRNDRAIRTAAKWYNAHLNLDPVKIKTILLTDDAKNRQLAENE 185

Query: 188 GLLTSSIEGYISTLSNGEPLLDKLSKKEAVVETSVKDSLYPLHATPSEIHAGIKNQSLLQ 247
           G+ T S+E YI +L N   L DKL KK   + +  ++  +P H TPSEIH GIK+  LLQ
Sbjct: 186 GIPTISMEDYILSLENSGFLSDKLCKKSYGMVSKGRE-FFPCHLTPSEIHDGIKHGKLLQ 244

Query: 248 G 248
           G
Sbjct: 245 G 245

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401245|ref|XP_003486097.1| PREDICTED: exosome complex exonuclease RRP44-like [Bombus impatiens]

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 130/241 (53%), Positives = 169/241 (70%), Gaps = 16/241 (6%)

Query: 13  VMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLL 72
           V K VREHYLRDD+ CGS+ C  C  +        T +  + D+  + SS K MEP+YLL
Sbjct: 16  VFKTVREHYLRDDIHCGSKACGKCVYR--------TRNIILDDEDSSVSSSKIMEPYYLL 67

Query: 73  LDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEH 132
           +DTNIIL+QIDILEE  +CNVI+VQT+L+EVKH+SS+VYKRL+++I+NP RKFYVFVNEH
Sbjct: 68  IDTNIILDQIDILEEDIICNVIIVQTVLEEVKHKSSTVYKRLRNIITNPQRKFYVFVNEH 127

Query: 133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHL---ESAVRVILLSEDVRNRDLATQSGL 189
           H +TYVE+ PGES NDRNDRA+R    WY  HL   ++ ++ +LL++D RNR+LA + G+
Sbjct: 128 HKDTYVERNPGESTNDRNDRAIRVATKWYNAHLNLDDNTIKTVLLTDDTRNRELAEKEGI 187

Query: 190 LTSSIEGYISTLSNGEPLLDKLSKKE--AVVETSVKDSLYPLHATPSEIHAGIKNQSLLQ 247
              ++E YI +L N   L DKL KK   AV E      ++P H TP E+H GIKN  LLQ
Sbjct: 188 PVITMEDYILSLENSGFLADKLCKKSYGAVFEGP---EIFPCHLTPFELHEGIKNGKLLQ 244

Query: 248 G 248
           G
Sbjct: 245 G 245

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720631|ref|XP_003398737.1| PREDICTED: exosome complex exonuclease RRP44-like [Bombus terrestris]

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 131/243 (53%), Positives = 170/243 (69%), Gaps = 20/243 (8%)

Query: 13  VMKIVREHYLRDDLSCGSELCLAC--DTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHY 70
           V K VREHYLRDD+ CGS+ C  C   T+  ILD   +S+          SS K MEP+Y
Sbjct: 16  VFKTVREHYLRDDIHCGSKACGKCVYGTRNIILDDEDSSA----------SSSKIMEPYY 65

Query: 71  LLLDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVN 130
           LL+DTNIIL+QIDILEE  +CNVI+VQT+L+E+KH+SS VYKRL+++I+NP RKFYVFVN
Sbjct: 66  LLIDTNIILDQIDILEEDIICNVIIVQTVLEELKHKSSIVYKRLRNIINNPQRKFYVFVN 125

Query: 131 EHHYETYVEQEPGESVNDRNDRALRRVATWYEEHL---ESAVRVILLSEDVRNRDLATQS 187
           EHH +TYV+++PGES NDRNDRA+R    WY  HL   ++ ++ +LL++D RNR+LA + 
Sbjct: 126 EHHKDTYVQRDPGESTNDRNDRAIRVATKWYNAHLNLDDNTIKTVLLTDDTRNRELAEKE 185

Query: 188 GLLTSSIEGYISTLSNGEPLLDKLSKKE--AVVETSVKDSLYPLHATPSEIHAGIKNQSL 245
           G+   S+E YI +L N   L DKL KK   AV E      ++P H TP E+H GIKN  L
Sbjct: 186 GIPVISMEDYIFSLENSGFLADKLCKKSYGAVFEGP---EIFPCHLTPFELHEGIKNGKL 242

Query: 246 LQG 248
           +QG
Sbjct: 243 VQG 245

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860552|ref|XP_003705753.1| PREDICTED: exosome complex exonuclease RRP44-like [Megachile rotundata]

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 129/241 (53%), Positives = 162/241 (67%), Gaps = 16/241 (6%)

Query: 13  VMKIVREHYLRDDLSCGSELCLAC--DTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHY 70
           V K VREHYLRDD+ CGS+ C  C    +  ILD   +S K          S K   P+Y
Sbjct: 16  VFKTVREHYLRDDIHCGSKACDKCLYRHRNVILDDEDSSVK----------SSKLSYPYY 65

Query: 71  LLLDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVN 130
           LLLDTNIIL+QIDILEE  +CNVI++QT+L+EVKHRSS+VYK+LKD+I++  RKFY+FVN
Sbjct: 66  LLLDTNIILDQIDILEENIICNVIILQTVLEEVKHRSSTVYKKLKDIIADTHRKFYIFVN 125

Query: 131 EHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLE---SAVRVILLSEDVRNRDLATQS 187
           EHH ETY+E+ PGES NDRNDRA+R    WY  HL       + +LL++DV NR+LA + 
Sbjct: 126 EHHKETYIERNPGESANDRNDRAIRVATKWYNTHLNLSGCKTKTVLLTDDVHNRELAEKE 185

Query: 188 GLLTSSIEGYISTLSNGEPLLDKLSKKEAVVETSVKDSLYPLHATPSEIHAGIKNQSLLQ 247
           G+   S+E YI +L N   L DKL KK +    S   + +P H TPSE+H GIKN  LLQ
Sbjct: 186 GIPVLSMEDYIVSLENSGFLADKLCKK-SYSANSDGQAFFPCHLTPSELHDGIKNGKLLQ 244

Query: 248 G 248
           G
Sbjct: 245 G 245

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199462|gb|EFN80075.1| Exosome complex exonuclease RRP44 [Harpegnathos saltator]

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 123/244 (50%), Positives = 167/244 (68%), Gaps = 16/244 (6%)

Query: 13  VMKIVREHYLRDDLSCGSELCLACDTK--EAILDKIPTSSKAILDKIPTSSSKKYMEPHY 70
           + K VREHYLRDD+ CG ++C  C+ +    ILD+    +K+ L  IP         P+Y
Sbjct: 16  IYKTVREHYLRDDICCGFKVCKKCNGRLGNMILDEKDAGAKSSL--IPN--------PYY 65

Query: 71  LLLDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVN 130
           L+LDTNIIL QIDILEE  +CNVI++QT+L+EV+H+SS+VYK+LK++I +  RKF+VF+N
Sbjct: 66  LVLDTNIILNQIDILEEDVICNVIILQTVLEEVRHKSSTVYKKLKNIIVDAKRKFFVFIN 125

Query: 131 EHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLE---SAVRVILLSEDVRNRDLATQS 187
           EHH ETY+E+EPGE  NDRNDRA+R    WY  HLE     V++ LL++D  NR LA +S
Sbjct: 126 EHHRETYIEREPGEKANDRNDRAIRVAVQWYNTHLEFDNHNVKIALLTDDAENRTLAAES 185

Query: 188 GLLTSSIEGYISTLSNGEPLLDKLSKKEAVVETSVKDSLYPLHATPSEIHAGIKNQSLLQ 247
           G+  +S+E YI++L NG  LLDKL K     ++   D ++P H  P+EIH GI +  LLQ
Sbjct: 186 GIFVASMEDYIASLKNGNFLLDKLCKHSYTSDSHEPD-MFPCHLGPAEIHDGISSGKLLQ 244

Query: 248 GMNL 251
           G  L
Sbjct: 245 GTFL 248

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015637|ref|XP_003691806.1| PREDICTED: exosome complex exonuclease RRP44-like [Apis florea]

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/239 (52%), Positives = 161/239 (67%), Gaps = 13/239 (5%)

Query: 13  VMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLL 72
           V K +REHYLR+D+ CGS++C  C         +      ILD+     + K ME HYLL
Sbjct: 16  VFKTIREHYLRNDIHCGSKVCEKC---------VCRIRNVILDEDSKIKNFKIMESHYLL 66

Query: 73  LDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEH 132
           +DTNIIL+QIDILEE    NVI+VQT+L+EVKH+SS VYKRLK+LI+N  RKFYVFVNEH
Sbjct: 67  IDTNIILDQIDILEEDVFYNVIIVQTVLEEVKHKSSIVYKRLKNLINNVQRKFYVFVNEH 126

Query: 133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHLE---SAVRVILLSEDVRNRDLATQSGL 189
           H ETY+E+ PGES +DRNDRA+R  A WY  HL      ++ +LL++D +NR+LA   G+
Sbjct: 127 HKETYIERNPGESTSDRNDRAIRMAAKWYNTHLNLDHIKIKTVLLTDDAQNRELAKNEGI 186

Query: 190 LTSSIEGYISTLSNGEPLLDKLSKKEAVVETSVKDSLYPLHATPSEIHAGIKNQSLLQG 248
            T S+E YI +L N   L DKL KK   + +  ++  +P H TPSEIH GIK   LLQG
Sbjct: 187 PTISMEDYILSLENSGFLSDKLCKKSYGMISEGRE-FFPCHLTPSEIHDGIKYGKLLQG 244

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119113846|ref|XP_314089.3| AGAP005191-PA [Anopheles gambiae str. PEST] gi|116128315|gb|EAA09476.3| AGAP005191-PA [Anopheles gambiae str. PEST]

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 122/246 (49%), Positives = 164/246 (66%), Gaps = 21/246 (8%)

Query: 13  VMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLL 72
           ++KIVREHYLRDD+ CGS  C  C   E         + A+LD++P   S+++  PHYLL
Sbjct: 16  ILKIVREHYLRDDIWCGSAACQTCPADE---------NAALLDEVPEPVSERFAFPHYLL 66

Query: 73  LDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEH 132
           LDTN+IL Q+D+LEE  + NVI++ T+L EVKHRS+ VYKRL+ ++S+P+RKFY FVNEH
Sbjct: 67  LDTNVILYQMDLLEESAIRNVIILHTVLDEVKHRSAVVYKRLRAVLSDPARKFYTFVNEH 126

Query: 133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHLE---------SAVRVILLSEDVRNRDL 183
           H +TYVE+EPGES NDRNDR +R  A WY +HL          + VR++LLS+D  NR  
Sbjct: 127 HKDTYVEREPGESANDRNDRMIRTAAEWYGKHLAPRVGKKSAGAGVRIVLLSDDADNRAK 186

Query: 184 ATQSGLLTSSIEGYI-STLSNGEPLLDKLSKKEAVVETSVKDSLYPLHATPSEIHAGIKN 242
           A   GL T S   Y+ +  +    LLDK++++E V E+  KD L+P H T  +IH GIK 
Sbjct: 187 AMALGLNTCSALEYMKAAKATFAHLLDKIAQRELVSES--KDPLFPSHLTMLQIHEGIKG 244

Query: 243 QSLLQG 248
             L+QG
Sbjct: 245 GKLMQG 250

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019034|gb|EGI59568.1| Exosome complex exonuclease RRP44 [Acromyrmex echinatior]

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 115/244 (47%), Positives = 166/244 (68%), Gaps = 16/244 (6%)

Query: 13  VMKIVREHYLRDDLSCGSELCLACDTK--EAILDKIPTSSKAILDKIPTSSSKKYMEPHY 70
           + K VREHYLRDD+ CGS+ C+ C  +  + +LD     +K+ L  IP+        P++
Sbjct: 16  IFKTVREHYLRDDIYCGSKTCMKCKARPRDMVLDMEDAGAKSSL--IPS--------PYF 65

Query: 71  LLLDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVN 130
           L+LDTNIIL+QIDILEE  + NVI++QT+L+E++H+S++VYK+LK +I N +R F++F+N
Sbjct: 66  LVLDTNIILDQIDILEENVITNVIILQTVLEEIRHKSATVYKKLKHIIGNATRNFFLFIN 125

Query: 131 EHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLES---AVRVILLSEDVRNRDLATQS 187
           EHH ETY+E+EPGE  NDRNDRA+R    WY  HL S    + V+LL++D+ N+  A + 
Sbjct: 126 EHHRETYIEREPGEKTNDRNDRAIRVAVKWYNTHLNSDDNNINVVLLTDDMENKTRAAEE 185

Query: 188 GLLTSSIEGYISTLSNGEPLLDKLSKKEAVVETSVKDSLYPLHATPSEIHAGIKNQSLLQ 247
           GL   S+E YI++L N   LLDKLSK+    +    + L+P H +P+E+H GI +  LLQ
Sbjct: 186 GLFVVSMEDYIASLENASFLLDKLSKRSYSSDIHGPE-LFPCHLSPTEVHNGISSGKLLQ 244

Query: 248 GMNL 251
           G  L
Sbjct: 245 GTFL 248

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
FB|FBgn0039183	983	Dis3 "Dis3" [Drosophila melano	0.877	0.226	0.446	1.1e-49
ZFIN|ZDB-GENE-080213-3	950	dis3 "DIS3 mitotic control hom	0.885	0.236	0.462	2e-49
RGD|1304646	565	Dis3 "DIS3 mitotic control hom	0.897	0.403	0.439	2.5e-49
UNIPROTKB|F2Z2C0	559	DIS3 "Exosome complex exonucle	0.897	0.407	0.454	1.1e-48
UNIPROTKB|F1N1R4	951	DIS3 "Uncharacterized protein"	0.897	0.239	0.442	4e-48
UNIPROTKB|E2RNY6	958	DIS3 "Uncharacterized protein"	0.897	0.237	0.450	6.8e-48
UNIPROTKB|Q9Y2L1	958	DIS3 "Exosome complex exonucle	0.897	0.237	0.454	8.8e-48
MGI|MGI:1919912	958	Dis3 "DIS3 mitotic control hom	0.897	0.237	0.438	8.8e-48
UNIPROTKB|E1BXX6	963	DIS3 "Uncharacterized protein"	0.897	0.236	0.428	2.4e-47
CGD|CAL0003527	1004	orf19.5229 [Candida albicans (	0.905	0.229	0.398	3.2e-42

FB|FBgn0039183 Dis3 "Dis3" [Drosophila melanogaster (taxid:7227)]

 Score = 526 (190.2 bits), Expect = 1.1e-49, P = 1.1e-49
 Identities = 112/251 (44%), Positives = 158/251 (62%)

Query:    13 VMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLL 72
             ++KIVREHYLRDD+ CGSELC  C   E    ++ TS  A       + S  +  PHYL+
Sbjct:    16 ILKIVREHYLRDDIGCGSELCRECFQNEVY--QL-TSQHA-------NKSTLFKFPHYLV 65

Query:    73 LDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEH 132
             LDTN++L+QID+LEE  L NV+++ T+L EVKHRSS++YKR  +++ + +R FYVFVNEH
Sbjct:    66 LDTNVVLDQIDVLEEDVLRNVVVLTTVLNEVKHRSSAIYKRFNEIVHDRTRNFYVFVNEH 125

Query:   133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHLES-------------AVRVILLSEDVR 179
             H ETY ++EP E+ NDRNDRA+R    WY++HL++             A RV+LL++D  
Sbjct:   126 HKETYADREPDETANDRNDRAIRLATKWYDDHLQASQSSKEFERSGKAATRVVLLTDDAA 185

Query:   180 NRDLATQSGLLTSSIEGYISTLSNGEPLLDKLSKKEAVVETSVKDSL--YPLHATPSEIH 237
             NR  A   G+L ++   Y+ +L +   L+DKLS K      S K+ L  YP H +  E+ 
Sbjct:   186 NRAKAEAEGILVTTAAEYVKSLEDFPLLMDKLSHKTF---DSEKNGLPQYPPHLSMKELL 242

Query:   238 AGIKNQSLLQG 248
              G++   LLQG
Sbjct:   243 EGLRQNKLLQG 253

GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS

GO:0006397 "mRNA processing" evidence=ISS

GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA

GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0005652 "nuclear lamina" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0071027 "nuclear RNA surveillance" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-080213-3 dis3 "DIS3 mitotic control homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 523 (189.2 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 112/242 (46%), Positives = 149/242 (61%)

Query:    13 VMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLL 72
             V+KIVREHYLRDD+ CGSE+C  C       D+ P     +L +     S     PHYL+
Sbjct:    16 VLKIVREHYLRDDIWCGSEVCKECK------DEAP-----VLQEETCIESNLCPYPHYLI 64

Query:    73 LDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEH 132
              DTN++L QIDILE+P + NVI++QT+LQEV+HRS+ VYKR+KD I    + FY F NEH
Sbjct:    65 PDTNVVLHQIDILEDPLIRNVIILQTVLQEVRHRSAPVYKRIKDAIHEKEKHFYTFTNEH 124

Query:   133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHLESA-----VRVILLSEDVRNRDLATQS 187
             H ET++E+E GES NDRNDRA+R  A WY +HL  A     ++V+LL+ D  N++ A Q 
Sbjct:   125 HRETFIEREQGESANDRNDRAIRVAAKWYTDHLAKATDGGTLKVVLLTNDRANKEKAEQF 184

Query:   188 GLLTSSIEGYISTLSNGEPLLDKLSK-KEAVVETSVKDSLYPLHATPSEIHAGIKNQSLL 246
             GL     E YI +L     L+D+L+   +   E +    L+P H   S I  GIKN   +
Sbjct:   185 GLTVYRCEEYIKSLVGNPELVDRLAMTSDDQNEITGSKLLFPEHLPLSRIQTGIKNGVFI 244

Query:   247 QG 248
             QG
Sbjct:   245 QG 246

GO:0003723 "RNA binding" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

RGD|1304646 Dis3 "DIS3 mitotic control homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 106/241 (43%), Positives = 155/241 (64%)

Query:    13 VMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLL 72
             V+KIVREHYLRDD+ CG+  C AC    A     P       D+   SS   +  PHYLL
Sbjct:    16 VVKIVREHYLRDDIGCGTPACSACGAAHAG----PALELQPRDQ--ASSLCPW--PHYLL 67

Query:    73 LDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEH 132
              DTN++L QID+LE+P + NVI++QT+LQEV++RS+ +YKR++D+ +N  + FY F NEH
Sbjct:    68 PDTNVLLHQIDVLEDPAIRNVIVLQTVLQEVRNRSAPIYKRIRDVTNNQEKHFYTFTNEH 127

Query:   133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHL----ESAVRVILLSEDVRNRDLATQSG 188
             H ETY+EQE GE+ NDRNDRA+R  A WY EHL    E+ ++VIL++ D +N++ A + G
Sbjct:   128 HKETYIEQEQGENANDRNDRAIRVAAKWYNEHLKMSAENQLQVILITNDKKNKEKAAEEG 187

Query:   189 LLTSSIEGYISTLSNGEPLLDKLS-KKEAVVETSVKDSLYPLHATPSEIHAGIKNQSLLQ 247
             +   + E Y+ +L+    L+D+L+   + + E      ++  H   S++  GIK+ S LQ
Sbjct:   188 IPAFTCEEYVKSLTANPELIDRLACLSDEMNEIESGKIIFSEHLPLSKLQQGIKSGSYLQ 247

Query:   248 G 248
             G
Sbjct:   248 G 248

GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISO

GO:0000176 "nuclear exosome (RNase complex)" evidence=ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0004519 "endonuclease activity" evidence=ISO

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISO

GO:0005654 "nucleoplasm" evidence=ISO

GO:0016075 "rRNA catabolic process" evidence=ISO

GO:0071034 "CUT catabolic process" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F2Z2C0 DIS3 "Exosome complex exonuclease RRP44" [Homo sapiens (taxid:9606)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 110/242 (45%), Positives = 154/242 (63%)

Query:    13 VMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLL 72
             VMKIVREHYLRDD+ CG+  C AC        + P       D  P SS     +PHYLL
Sbjct:    16 VMKIVREHYLRDDIGCGAPGCAACGGAH----EGPALEPQPQD--PASSVCP--QPHYLL 67

Query:    73 LDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEH 132
              DTN++L QID+LE+P + NVI++QT+LQEV++RS+ VYKR++D+ +N  + FY F NEH
Sbjct:    68 PDTNVLLHQIDVLEDPAIRNVIVLQTVLQEVRNRSAPVYKRIRDVTNNQEKHFYTFTNEH 127

Query:   133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHLE--SA---VRVILLSEDVRNRDLATQS 187
             H ETYVEQE GE+ NDRNDRA+R  A WY EHL+  SA   ++VI ++ D RN++ A + 
Sbjct:   128 HRETYVEQEQGENANDRNDRAIRVAAKWYNEHLKKMSADNQLQVIFITNDRRNKEKAIEE 187

Query:   188 GLLTSSIEGYISTLSNGEPLLDKLS-KKEAVVETSVKDSLYPLHATPSEIHAGIKNQSLL 246
             G+   + E Y+ +L+    L+D+L+   E   E      ++  H   S++  GIK+ + L
Sbjct:   188 GIPAFTCEEYVKSLTANPELIDRLACLSEEGNEIESGKIIFSEHLPLSKLQQGIKSGTYL 247

Query:   247 QG 248
             QG
Sbjct:   248 QG 249

GO:0003723 "RNA binding" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

UNIPROTKB|F1N1R4 DIS3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 511 (184.9 bits), Expect = 4.0e-48, P = 4.0e-48
 Identities = 107/242 (44%), Positives = 154/242 (63%)

Query:    13 VMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLL 72
             VMKIVREHYLRDD+ CG+  C  CD       + P      LD+    +S    +PHYLL
Sbjct:    16 VMKIVREHYLRDDIGCGASGCAVCDGAH----EGPVLELQPLDR----ASSLCPQPHYLL 67

Query:    73 LDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEH 132
              DTN++L QID+LE+P + NVI++QT+LQEV++RS+ VYKR++D+ +N  + FY F NEH
Sbjct:    68 PDTNVLLHQIDVLEDPAIRNVIVLQTVLQEVRNRSAPVYKRIRDMTNNQEKHFYTFTNEH 127

Query:   133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHL-----ESAVRVILLSEDVRNRDLATQS 187
             H ETYVEQ  GE+ NDRNDRA+R  A WY EHL     E+ ++VI ++ D +N++ A + 
Sbjct:   128 HRETYVEQLQGENSNDRNDRAIRVAAKWYNEHLKNMSAENRLQVIFITNDRKNKEKAIEE 187

Query:   188 GLLTSSIEGYISTLSNGEPLLDKLS-KKEAVVETSVKDSLYPLHATPSEIHAGIKNQSLL 246
             G+   + E YI +L+    L+D+L+   E   E     +++  H   S++  GIK+ + L
Sbjct:   188 GIPAFTCEEYIKSLTANPELIDRLACLSEEGNEIESGKTIFSEHLPLSKLQQGIKSGTYL 247

Query:   247 QG 248
             QG
Sbjct:   248 QG 249

GO:0071034 "CUT catabolic process" evidence=IEA

GO:0016075 "rRNA catabolic process" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA

GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E2RNY6 DIS3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 509 (184.2 bits), Expect = 6.8e-48, P = 6.8e-48
 Identities = 109/242 (45%), Positives = 153/242 (63%)

Query:    13 VMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLL 72
             VMKIVREHYLRDD+ CG+  C AC        + P      LD  P SS      PHYLL
Sbjct:    16 VMKIVREHYLRDDIGCGAPGCAACGGAH----EGPVLEPQPLD--PASSLCP--RPHYLL 67

Query:    73 LDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEH 132
              DTN++L QID+LE+P + NVI++QT+LQEV++RS+ VYKR++D+ +N  + FY F NEH
Sbjct:    68 PDTNVLLHQIDVLEDPAIRNVIVLQTVLQEVRNRSAPVYKRIRDVTNNQEKHFYTFTNEH 127

Query:   133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHL-----ESAVRVILLSEDVRNRDLATQS 187
             H ETYVEQE GE+ NDRNDRA+R  A WY EHL     E+ ++VI ++ D +N++ A + 
Sbjct:   128 HRETYVEQEQGENANDRNDRAIRVAAKWYNEHLKKMSAENHLQVIFITNDRKNKEKAIEE 187

Query:   188 GLLTSSIEGYISTLSNGEPLLDKLS-KKEAVVETSVKDSLYPLHATPSEIHAGIKNQSLL 246
             G+   + E Y+ +L+    L+D+L+   E   E      ++  H   S++  GIK+ + L
Sbjct:   188 GIPAFTCEEYVKSLTANPELIDRLACLSEEGNEIENGRIIFSEHLPLSKLQQGIKSGTYL 247

Query:   247 QG 248
             QG
Sbjct:   248 QG 249

GO:0071034 "CUT catabolic process" evidence=IEA

GO:0016075 "rRNA catabolic process" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA

GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q9Y2L1 DIS3 "Exosome complex exonuclease RRP44" [Homo sapiens (taxid:9606)]

 Score = 508 (183.9 bits), Expect = 8.8e-48, P = 8.8e-48
 Identities = 110/242 (45%), Positives = 154/242 (63%)

Query:    13 VMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLL 72
             VMKIVREHYLRDD+ CG+  C AC        + P       D  P SS     +PHYLL
Sbjct:    16 VMKIVREHYLRDDIGCGAPGCAACGGAH----EGPALEPQPQD--PASSVCP--QPHYLL 67

Query:    73 LDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEH 132
              DTN++L QID+LE+P + NVI++QT+LQEV++RS+ VYKR++D+ +N  + FY F NEH
Sbjct:    68 PDTNVLLHQIDVLEDPAIRNVIVLQTVLQEVRNRSAPVYKRIRDVTNNQEKHFYTFTNEH 127

Query:   133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHLE--SA---VRVILLSEDVRNRDLATQS 187
             H ETYVEQE GE+ NDRNDRA+R  A WY EHL+  SA   ++VI ++ D RN++ A + 
Sbjct:   128 HRETYVEQEQGENANDRNDRAIRVAAKWYNEHLKKMSADNQLQVIFITNDRRNKEKAIEE 187

Query:   188 GLLTSSIEGYISTLSNGEPLLDKLS-KKEAVVETSVKDSLYPLHATPSEIHAGIKNQSLL 246
             G+   + E Y+ +L+    L+D+L+   E   E      ++  H   S++  GIK+ + L
Sbjct:   188 GIPAFTCEEYVKSLTANPELIDRLACLSEEGNEIESGKIIFSEHLPLSKLQQGIKSGTYL 247

Query:   247 QG 248
             QG
Sbjct:   248 QG 249

GO:0003723 "RNA binding" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IDA

GO:0006364 "rRNA processing" evidence=TAS

GO:0000178 "exosome (RNase complex)" evidence=TAS

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA

GO:0000175 "3'-5'-exoribonuclease activity" evidence=IMP

GO:0004519 "endonuclease activity" evidence=IMP

GO:0016075 "rRNA catabolic process" evidence=IMP

GO:0071034 "CUT catabolic process" evidence=IMP

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1919912 Dis3 "DIS3 mitotic control homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 508 (183.9 bits), Expect = 8.8e-48, P = 8.8e-48
 Identities = 106/242 (43%), Positives = 154/242 (63%)

Query:    13 VMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLL 72
             V+KIVREHYLRDD+ CG+  C AC    A     P       D+   SS   +  PHYLL
Sbjct:    16 VVKIVREHYLRDDIGCGAPACSACGGAHAG----PALELQPRDQ--ASSLCPW--PHYLL 67

Query:    73 LDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEH 132
              DTN++L QID+LE P + NVI++QT++QEV++RS+ +YKR++D+ +N  + FY F NEH
Sbjct:    68 PDTNVLLHQIDVLEHPAIRNVIVLQTVMQEVRNRSAPIYKRIRDVTNNQEKHFYTFTNEH 127

Query:   133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHL-----ESAVRVILLSEDVRNRDLATQS 187
             H ETY+EQE GE+ NDRNDRA+R  A WY EHL     +S ++VIL++ D +N++ A Q 
Sbjct:   128 HKETYIEQEQGENANDRNDRAIRVAAKWYNEHLKRVAADSQLQVILITNDRKNKEKAVQE 187

Query:   188 GLLTSSIEGYISTLSNGEPLLDKLSK-KEAVVETSVKDSLYPLHATPSEIHAGIKNQSLL 246
             G+   + E Y+ +L+    L+D+L+   + + E      ++  H   S++  GIK+ S L
Sbjct:   188 GIPAFTCEEYVKSLTANPELIDRLAYLSDEMNEIESGKIIFSEHLPLSKLQQGIKSGSYL 247

Query:   247 QG 248
             QG
Sbjct:   248 QG 249

GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISO

GO:0000176 "nuclear exosome (RNase complex)" evidence=ISO

GO:0000178 "exosome (RNase complex)" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0004519 "endonuclease activity" evidence=ISO

GO:0004527 "exonuclease activity" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0016075 "rRNA catabolic process" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0071034 "CUT catabolic process" evidence=ISO

UNIPROTKB|E1BXX6 DIS3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 504 (182.5 bits), Expect = 2.4e-47, P = 2.4e-47
 Identities = 105/245 (42%), Positives = 152/245 (62%)

Query:    13 VMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYME-PHYL 71
             V+K+VREHYLRDD+ CG++ C  C  +       P      L+  P+ ++      PHYL
Sbjct:    16 VVKVVREHYLRDDIPCGADACPLCPVRPGQ----PLG----LEARPSGAASSLCPGPHYL 67

Query:    72 LLDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNE 131
             L DTN++L QIDILE+P + NVI++QT+LQEV++RS+ VYKR++D+I NP + FY F NE
Sbjct:    68 LPDTNLLLHQIDILEDPVIKNVIVLQTVLQEVRNRSAPVYKRIRDVIGNPEKHFYSFTNE 127

Query:   132 HHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESA-------VRVILLSEDVRNRDLA 184
             HH ETY++QE GES NDRNDRA+R    WY EHL+         ++VI L+ D  N++ A
Sbjct:   128 HHRETYIQQEQGESSNDRNDRAIRVAVKWYSEHLKKIQNEENEDIQVIFLTNDRNNKEKA 187

Query:   185 TQSGLLTSSIEGYISTLSNGEPLLDKLS-KKEAVVETSVKDSLYPLHATPSEIHAGIKNQ 243
              + G+   + E YI +L +   L+D+L+   +   E      ++P H   S++  GIK+ 
Sbjct:   188 LEEGITAYTCEEYIKSLIDNPDLVDRLACVSDEGKEIESGKIIFPEHIPLSKLQQGIKSG 247

Query:   244 SLLQG 248
               LQG
Sbjct:   248 IYLQG 252

GO:0003723 "RNA binding" evidence=IEA

GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA

GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0016075 "rRNA catabolic process" evidence=IEA

GO:0071034 "CUT catabolic process" evidence=IEA

CGD|CAL0003527 orf19.5229 [Candida albicans (taxid:5476)]

 Score = 457 (165.9 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 100/251 (39%), Positives = 157/251 (62%)

Query:    14 MKIVREHYLRDDLSCGSELCLACDT--KEAILDKIPTSSKAILDKIPTSSSKKYMEPHYL 71
             +KIVREHYLR+D+ C S +C +C    K     ++P   K IL   PT ++K   EPHYL
Sbjct:    33 LKIVREHYLRNDIPCYSTICQSCQDIIKPDAQGELP---KFILSSNPTKTAKG--EPHYL 87

Query:    72 LLDTNIILEQIDILEEPTLC--NVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFV 129
             +LDTNIIL  ID+LE    C  +VI+ QT+L+EVK+RS  +Y+RL++L+ +  ++F VF 
Sbjct:    88 VLDTNIILHAIDLLEN-NQCFYDVIIPQTVLEEVKNRSFPIYQRLRNLVKSEDKRFIVFH 146

Query:   130 NEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGL 189
             NE++ +TY+ +   E++NDRNDRA+R+VA WY+ HL S ++   +  D  NR+ A + G+
Sbjct:   147 NEYNEQTYINRNKNETINDRNDRAIRKVAQWYQTHLPSKIKTFFICNDKDNRNKAIKEGI 206

Query:   190 LTSSIEGYISTLSNGEPLLDKLSKKEAVVE-----TSV------KDSLYPLHATPSEIHA 238
                S+  YI +L N + L D + + ++  E     T+       +++ +P + + + I A
Sbjct:   207 DARSLVEYIESLPNADDLSDLIPQDDSTFENDKNSTTATAGSDDEETSFPEYYSNARIMA 266

Query:   239 GIKNQSLLQGM 249
             GIKN +L QG+
Sbjct:   267 GIKNGTLYQGI 277

GO:0005730 "nucleolus" evidence=IEA

GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA

GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004521 "endoribonuclease activity" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA

GO:0071028 "nuclear mRNA surveillance" evidence=IEA

GO:0000467 "exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic process" evidence=IEA

GO:0071039 "nuclear polyadenylation-dependent CUT catabolic process" evidence=IEA

GO:0070651 "nonfunctional rRNA decay" evidence=IEA

GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	254
cd09862	182	cd09862, PIN_Rrp44, PIN domain of yeast exosome su	3e-86
smart00670	111	smart00670, PINc, Large family of predicted nucleo	2e-14
pfam13638	129	pfam13638, PIN_4, PIN domain	3e-12
cd09854	125	cd09854, PIN_VapC-Smg6_family, PIN domains of VapC	1e-10

>gnl|CDD|189032 cd09862, PIN_Rrp44, PIN domain of yeast exosome subunit Rrp44 endoribonuclease and other eukaryotic homologs

 Score =  254 bits (650), Expect = 3e-86
 Identities = 94/186 (50%), Positives = 129/186 (69%), Gaps = 12/186 (6%)

Query: 13  VMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLL 72
           V+K+VREHYLRDD+ CGS+ C  CD         P  S   L   P SS      PHYL+
Sbjct: 8   VLKVVREHYLRDDIPCGSKACTECD---------PDESPLSLGPPPKSSLFT--SPHYLV 56

Query: 73  LDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEH 132
            DTN++L QID+LE P++ +VI++QT+L+EV+HRS  +Y RL+ LI +P ++FYVF NEH
Sbjct: 57  PDTNVVLHQIDLLEHPSITDVIILQTVLEEVRHRSLPIYNRLRALIKDPDKRFYVFSNEH 116

Query: 133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHL-ESAVRVILLSEDVRNRDLATQSGLLT 191
           H ETYVE+EPGES+NDRNDRA+R    WY EHL + +++V+LL+ D  NR+ A + G+  
Sbjct: 117 HRETYVEREPGESINDRNDRAIRVATKWYSEHLPKLSIKVVLLTNDRANREKAAEEGITA 176

Query: 192 SSIEGY 197
            +I+ Y
Sbjct: 177 KTIKEY 182

PIN (PilT N terminus) domain of the Saccharomyces cerevisiae exosome subunit Rrp44 (Ribosomal RNA-processing protein 44 or Protein Dis3 homolog) and other similar eukaryotic homologs are included in this family. The eukaryotic exosome is a conserved macromolecular complex responsible for many RNA-processing and RNA-degradation reactions. It is composed of nine core subunits that directly binds Rrp44. The Rrp44 nuclease is the catalytic subunit of the exosome and has endonuclease activity in the PIN domain and an exoribonuclease activity in its RNase II-like region. Rrp44 binding to the exosome is mediated mainly by the PIN domain and by subunits Rrp41-Rrp45, and binding predictions indicate that the PIN domain active site is positioned on the outer surface of the exosome. These PIN domains are structural homologs of flap endonuclease-1 (FEN1)-like PIN domains, but lack the extensive arch/clamp region and the H3TH (helix-3-turn-helix) domain, an atypical helix-hairpin-helix-2-like region, seen in FEN1-like PIN domains. PIN domains within this subgroup contain four highly conserved acidic residues (putative metal-binding, active site residues) which cluster at the C-terminal end of the beta-sheet and form a negatively charged pocket near the center of the molecule. Recombinant Rrp44 was shown to possess manganese-dependent endonuclease activity in vitro that was abolished by point mutations in the putative metal binding residues of its PIN domain. Length = 182

>gnl|CDD|214771 smart00670, PINc, Large family of predicted nucleotide-binding domains

 Score = 67.1 bits (164), Expect = 2e-14
 Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 11/117 (9%)

Query: 69  HYLLLDTNIILEQI--DILEEP--TLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRK 124
             ++LDTN++++ +  D LE+       V + QT+L+E+++ +    K+L++L       
Sbjct: 1   MKVVLDTNVLIDGLIRDALEKLLEKKGEVYIPQTVLEELEYLALRSLKKLEELALEGKII 60

Query: 125 FYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNR 181
             V   E   E  +E+   +     ND  +   A            V+L++ D   R
Sbjct: 61  LKVLKEERIEEEILERLSLKLELLPNDALILATAKELGN-------VVLVTNDRDLR 110

From similarities to 5'-exonucleases, these domains are predicted to be RNases. PINc domains in nematode SMG-5 and yeast NMD4p are predicted to be involved in RNAi. Length = 111

>gnl|CDD|222278 pfam13638, PIN_4, PIN domain

 Score = 61.8 bits (151), Expect = 3e-12
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 73  LDTNIILEQIDILEEPTLCNVILV-QTILQEV-KHRSSSVYKRLKDLISNPSRKFYVFVN 130
           LDTN++L   D L      N +++  T+L+E+ K +  S  + L        R     + 
Sbjct: 3   LDTNVLLHDPDALFSFAEENDVVIPITVLEELDKLKKRSDLRELGRNAREAIRFLDELLE 62

Query: 131 EHHYETYVE---QEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQS 187
           +      V+   +     + D+ND  +   A   +E L     V+L++ D+  R  A   
Sbjct: 63  DGSGRIRVQTLDERLPPEIEDKNDDRILDCALLLQEEL-PDRPVVLVTNDINLRIKAKAL 121

Query: 188 GLLTSS 193
           G+    
Sbjct: 122 GIPAED 127

Members of this family of bacterial domains are predicted to be RNases (from similarities to 5'-exonucleases). Length = 129

>gnl|CDD|189024 cd09854, PIN_VapC-Smg6_family, PIN domains of VapC and Smg6 ribonucleases, ribosome assembly factor NOB1, rRNA-processing protein Fcf1, Archaeoglobus fulgidus AF0591 protein, and homologs

 Score = 57.3 bits (138), Expect = 1e-10
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 20/126 (15%)

Query: 72  LLDTNIILEQI--------DILEEP-TLCNVILVQTILQEVKHRSSS--VYKRLKDLISN 120
           +LDTN+IL  I        D+L+     C+V +   +  E++++ S   V  R++     
Sbjct: 1   ILDTNVILFAISHKLDIIHDLLDCLNAFCDVYISDIVAAEIRNKGSKFKVALRIRKDC-R 59

Query: 121 PSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRN 180
             ++F  F  E    T+VE+ P E++ND +D A+ +               I+ + D   
Sbjct: 60  DHKRFICFHKEFSEHTFVERLPNETINDADDCAINKTCMHRM--------FIVATCDADL 111

Query: 181 RDLATQ 186
           R+ A +
Sbjct: 112 REAARK 117

PIN (PilT N terminus) domains of such ribonucleases as the toxins of prokaryotic toxin/antitoxin operons FitAB and VapBC, as well as, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and, rRNA-processing protein Fcf1, are included in this family. Also included are the PIN domains of the Pyrobaculum aerophilum Pea0151 and Archaeoglobus fulgidus AF0591 proteins and other similar archaeal homologs. These PIN domains are structural homologs of flap endonuclease-1 (FEN1)-like PIN domains, but lack the extensive arch/clamp region and the H3TH (helix-3-turn-helix) domain, an atypical helix-hairpin-helix-2-like region, seen in FEN1-like PIN domains. PIN domains typically contain three or four highly conserved acidic residues (putative metal-binding, active site residues) which cluster at the C-terminal end of the beta-sheet and form a negatively charged pocket near the center of the molecule. Length = 125

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	254
KOG2102|consensus	941		99.96
PF13638	133	PIN_4: PIN domain; PDB: 2HWW_C 2HWX_A 2DOK_B 2HWY_	99.65
COG1875	436	NYN ribonuclease and ATPase of PhoH family domains	99.62
smart00670	111	PINc Large family of predicted nucleotide-binding	99.31
PRK13764	602	ATPase; Provisional	98.37
COG1412	136	Uncharacterized proteins of PilT N-term./Vapc supe	97.61
PRK12496	164	hypothetical protein; Provisional	96.35
COG4956	356	Integral membrane protein (PIN domain superfamily)	95.66
COG1855	604	ATPase (PilT family) [General function prediction	95.64
PF04900	101	Fcf1: Fcf1; InterPro: IPR006984 This family is com	90.69
PF14367	162	DUF4411: Domain of unknown function (DUF4411)	85.88
COG1439	177	Predicted nucleic acid-binding protein, consists o	83.39
COG1569	142	Predicted nucleic acid-binding protein, contains P	82.6

>KOG2102|consensus

Probab=99.96  E-value=1.1e-30  Score=267.71  Aligned_cols=236  Identities=37%  Similarity=0.528  Sum_probs=204.4

Q ss_pred             EEEEEcccCceeEeeeeeeccCCcCcCCCcCcccccchhccccCCCCCccccCCCCCCCCCCCCCCeEEEechHHHhhch
Q psy4844           3 YHVVQSSVWLVMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLLLDTNIILEQI   82 (254)
Q Consensus         3 ~~~~ktr~G~v~kvvrE~YLRdDI~Cg~~~C~~C~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lVpDtnvll~~~   82 (254)
                      .++.++++|++.|.|||+|+|+||.|+..+|..|...           ...+....    +..+.+||.++|+|++++++
T Consensus         7 ~f~~~~~~~~~~~~vr~~~~r~~i~~~~~~~~~~~~~-----------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~   71 (941)
T KOG2102|consen    7 VFVRRTRRGRVTKRVREQYLRSDIECLQALCHSCNGS-----------SQPLGDER----SRAEARHYSLPATNPVLSQP   71 (941)
T ss_pred             cccccccccCccccccchhhhhhhhhhhhhccccccc-----------ccCccchh----ccccccccccCCCCcccccc
Confidence            4577899999999999999999999999999999211           11111111    12344899999999999999


Q ss_pred             hhccCC-CCCceeeeHHHHHHHhcCChhHHHHHHHHhcCCC-CcEEEEeCCccccccccCCCCCCcCCcccHHHHHHHHH
Q psy4844          83 DILEEP-TLCNVILVQTILQEVKHRSSSVYKRLKDLISNPS-RKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATW  160 (254)
Q Consensus        83 d~le~~-~~~~VII~qTVleev~~rs~~~y~RLr~li~~~~-~~~~vF~Ne~~~~T~v~r~~~es~~drndr~I~~aa~w  160 (254)
                      ++++++ ...+++++++|+++++.++.+.|.|++.++.+.. ++|++|.||++..||.++.++|+.+++++++++.++.|
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  151 (941)
T KOG2102|consen   72 DSLSNPGQRRDVIVPQSVLDEVRSRSSPVYPRIRPLISADSTKRFILFHNEFSRSTFAERAKDESANDRNDRAIRPAANW  151 (941)
T ss_pred             ccccCCCccccccccccccccccccccccccccccccccccccceeecccCCCchhhcccccCCCcchhccccccccccc
Confidence            999988 8899999999999999999999999999998877 99999999999999999999999999999999999999


Q ss_pred             HHHHhC-cCceEEEEeCC---hhhHHHHHhcCcceeeHHHHHHhCCCchhhhhhhcccchhhccCCCCCCCCCCCCHHHH
Q psy4844         161 YEEHLE-SAVRVILLSED---VRNRDLATQSGLLTSSIEGYISTLSNGEPLLDKLSKKEAVVETSVKDSLYPLHATPSEI  236 (254)
Q Consensus       161 Y~~Hl~-~~~~VvlvT~D---~~~~~ka~~~gi~~~s~~eYv~~~~~~~~L~D~l~~~~~~~~~~~~~~~y~ehL~~~~i  236 (254)
                      |..|++ ..++|+++|+|   ...+.++...|+...++++|++.++..+.+.|.+.+.....+..+++.+|++|||++.+
T Consensus       152 ~~~h~~~~~~~~~~~~~d~~~~~~~~~~~~~~i~~~~~~~y~~~~~~~~~l~~~l~~~~~~~~~~~~k~~~~~~l~~~~~  231 (941)
T KOG2102|consen  152 YDVHLPSLGPRVILVTTDVPSSVSRDNAVEHGIEPQTIKEYQKPLSPNHLLRDSLLQRVLESNFGSDKLLFSPYLPMAKI  231 (941)
T ss_pred             chhcccccCcceEEEeccchhhhhhhcccccccchhhhhhhccccCcchhhhhhhhhhcccccccccceeeccccchhhH
Confidence            999998 46779999999   66677888899999999999999987678999997544322221347899999999999


Q ss_pred             HhhhhcCceEEEEEEEE
Q psy4844         237 HAGIKNQSLLQGMNLYL  253 (254)
Q Consensus       237 ~~Gik~G~l~qG~l~v~  253 (254)
                      .+|||+|+++||+|+++
T Consensus       232 ~~~~~~g~~~~g~l~i~  248 (941)
T KOG2102|consen  232 KAGIKSGRLVQGTLRIS  248 (941)
T ss_pred             hhhhcccceeeceEEec
Confidence            99999999999999985

>PF13638 PIN_4: PIN domain; PDB: 2HWW_C 2HWX_A 2DOK_B 2HWY_B 2WP8_J

Probab=99.65  E-value=4.1e-17  Score=131.26  Aligned_cols=119  Identities=26%  Similarity=0.351  Sum_probs=75.9

Q ss_pred             EEechHHHhhchhhccCCCCCceeeeHHHHHHHhcCC-------------hhHHHH-HHHHhcCCCCcEEEEeCCccccc
Q psy4844          71 LLLDTNIILEQIDILEEPTLCNVILVQTILQEVKHRS-------------SSVYKR-LKDLISNPSRKFYVFVNEHHYET  136 (254)
Q Consensus        71 lVpDtnvll~~~d~le~~~~~~VII~qTVleev~~rs-------------~~~y~R-Lr~li~~~~~~~~vF~Ne~~~~T  136 (254)
                      +|||||++|+++++++......|+||++|++|+++..             ++...| |...++.....+.+  .....+.
T Consensus         1 ~V~DTnvll~~~~~l~~~~~~~ivIP~~Vl~ELd~lk~~~~~~~~~~~~~ar~~~~~l~~~~~~~~~~i~~--q~~~~~~   78 (133)
T PF13638_consen    1 YVLDTNVLLHHPDLLEKLEQNKIVIPLTVLEELDRLKKSSRDRDRELRKRAREAIRWLEKLLKRGSRSIRV--QTSDEEI   78 (133)
T ss_dssp             EEE-HHHHHHHHHHHHHHSSSEEEEEHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCT-TTEEE--CTTTS-E
T ss_pred             CEeehhHHhCChHHHhccccCEEEechHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCCCeEec--chhhhhc
Confidence            6899999999999998777788999999999997421             111222 33334443333332  1111100


Q ss_pred             cccCCCCCCcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcceeeHH
Q psy4844         137 YVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIE  195 (254)
Q Consensus       137 ~v~r~~~es~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~s~~  195 (254)
                        .. ........+|..|+.+|.||+++.+ ..+|||||+|.+++.+|.+.||+++|++
T Consensus        79 --~~-~~~~~~~~~D~~Il~~a~~~~~~~~-~~~vvLvT~D~~l~~~A~~~gi~~~~~~  133 (133)
T PF13638_consen   79 --DE-DLNLDAQRNDDRILNCALYLQEENP-GRKVVLVTNDKNLRLKARAEGIPAVSYE  133 (133)
T ss_dssp             --ES---S----HHHHHHHHHHHHHHHHCG-CEEEEEEE--HHHHHHHHHTT--EE---
T ss_pred             --ch-hhhccccccHHHHHHHHHHHHHhcC-CCeEEEEeCCHHHHHHHhhcccccccCC
Confidence              00 0011246899999999999999986 7999999999999999999999998864

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]

Probab=99.62  E-value=1.3e-15  Score=141.25  Aligned_cols=125  Identities=23%  Similarity=0.289  Sum_probs=103.3

Q ss_pred             CeEEEechHHHhhchhhccCCCCCceeeeHHHHHHHhc---------CChhHHHHHHHHhc-C------------CCCcE
Q psy4844          68 PHYLLLDTNIILEQIDILEEPTLCNVILVQTILQEVKH---------RSSSVYKRLKDLIS-N------------PSRKF  125 (254)
Q Consensus        68 ~~~lVpDtnvll~~~d~le~~~~~~VII~qTVleev~~---------rs~~~y~RLr~li~-~------------~~~~~  125 (254)
                      ++.+|+||||++|+|.+|.+|+.++||||.+|+||++.         +++|...|+.+.++ +            +++..
T Consensus         2 ~ktyVLDTnVLi~DP~Alf~F~eh~VvIP~~VlEELd~~Kr~~~evgrnAR~a~r~ld~L~~~~~~l~~giPl~~~G~~l   81 (436)
T COG1875           2 KKTYVLDTNVLIHDPTALFRFEEHDVVIPMVVIEELDATKRGHSEIGRNARQASRLLDELRNEHGRLKAGIPLGNKGGTL   81 (436)
T ss_pred             ceEEEEecceeeeCcHHHhcccccceEeeehHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhcCCccCCcccCCCCCeE
Confidence            36789999999999999999999999999999999994         78899999655554 2            25667


Q ss_pred             EEEeCCccccccccCCCCCCcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcceeeHHHHHHh
Q psy4844         126 YVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEGYIST  200 (254)
Q Consensus       126 ~vF~Ne~~~~T~v~r~~~es~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~s~~eYv~~  200 (254)
                      .++.|....    ...+.-..+..||+.|++++..+++.-+ +.+|||||+|.++|.||++.||.   .+||...
T Consensus        82 ~iel~~~~~----~~~~~~~~~~~~DnrIL~~~~~L~~~~~-~~~VvLVSKDi~~RvkA~a~Gl~---AeDY~~d  148 (436)
T COG1875          82 HVELNHQNS----TKLPNGFREGVNDNRILAVVLNLQEEEP-GRRVVLVSKDINLRVKASALGLA---AEDYEND  148 (436)
T ss_pred             EEEEeccCc----cccccccccccchHHHHHHHHHHHhcCC-CCcEEEEECCccceeehhhcCcc---HHHhhhh
Confidence            777775422    2345556778899999999999998765 68999999999999999999999   6777664

>smart00670 PINc Large family of predicted nucleotide-binding domains

Probab=99.31  E-value=1.7e-12  Score=100.41  Aligned_cols=104  Identities=24%  Similarity=0.251  Sum_probs=86.5

Q ss_pred             EEechHHHhhchh--hccCCCC--CceeeeHHHHHHHhcCC-hhHHHHHHHHhcCCCCcEEEEeCCc-cccccccCCCCC
Q psy4844          71 LLLDTNIILEQID--ILEEPTL--CNVILVQTILQEVKHRS-SSVYKRLKDLISNPSRKFYVFVNEH-HYETYVEQEPGE  144 (254)
Q Consensus        71 lVpDtnvll~~~d--~le~~~~--~~VII~qTVleev~~rs-~~~y~RLr~li~~~~~~~~vF~Ne~-~~~T~v~r~~~e  144 (254)
                      +|+|||+++++++  +++....  .+++||++|++|++... .+.+.+++.+.......+.+|.|++ +..++++....+
T Consensus         1 ~vlDTnvli~~~~~~~~~~~~~~~~~~~i~~~v~~El~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (111)
T smart00670        1 VVLDTNVLIDGLIGKALEKLLEKKGEVYIPPTVLEELEYLAKLRSLKKLEELALEGKIKLKVLKEERKLEEEILERLSLK   80 (111)
T ss_pred             CEeeHHHHHHHHHHHHHHHHHcCCCcEEECHHHHHHHHHHHHHHHHhhHHHHHHhcccccceeecCCCeEEEecccCChh
Confidence            4799999999998  7765433  67999999999999876 6789999999987778899999986 666777776666


Q ss_pred             CcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhH
Q psy4844         145 SVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNR  181 (254)
Q Consensus       145 s~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~  181 (254)
                      ...+++|..|+++|.||.       .++|+|+|.+++
T Consensus        81 ~~~~~~D~~il~~a~~~~-------~~~lvT~D~~l~  110 (111)
T smart00670       81 LELLPNDALILATAKELG-------NVVLVTNDRDLR  110 (111)
T ss_pred             hcCCCChHHHHHHHHHCC-------CCEEEeCCcccC
Confidence            667889999999999986       478999998754

From similarities to 5'-exonucleases, these domains are predicted to be RNases. PINc domains in nematode SMG-5 and yeast NMD4p are predicted to be involved in RNAi.

>PRK13764 ATPase; Provisional

Probab=98.37  E-value=8.7e-07  Score=88.35  Aligned_cols=115  Identities=15%  Similarity=0.224  Sum_probs=80.3

Q ss_pred             EEEechHHHhhch--hhccCCC--CCceeeeHHHHHHHhcC----------ChhHHHHHHHHhcCCCCcEEEEeCCcccc
Q psy4844          70 YLLLDTNIILEQI--DILEEPT--LCNVILVQTILQEVKHR----------SSSVYKRLKDLISNPSRKFYVFVNEHHYE  135 (254)
Q Consensus        70 ~lVpDtnvll~~~--d~le~~~--~~~VII~qTVleev~~r----------s~~~y~RLr~li~~~~~~~~vF~Ne~~~~  135 (254)
                      .+||||+|+++..  ++++...  ...||||.+|++|+++.          .....++|+++-.  .+.+-+-.++.. .
T Consensus         2 ~yVlDTSVIIDGri~~~i~~g~~~~~~IiIP~~Vl~ELe~~A~~~r~~G~~gLeeL~~L~~l~~--~g~i~ie~~~~~-p   78 (602)
T PRK13764          2 KIVPDTSVVIDGRVSELIEKGEYIGGTIIIPEAVVAELEAQANQGREIGFSGLEELKKLRELAE--EGLIELEFVGER-P   78 (602)
T ss_pred             eEEccceEEEechHHHHHHcCCccCCEEEeehHHHHHHHHHhhccchhhHHHHHHHHHHHHhhc--cCceEEEEeccc-c
Confidence            5789999999998  8887654  56799999999999951          1234555666532  344544444322 1


Q ss_pred             ccccCCCCCCcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcceeeHHHH
Q psy4844         136 TYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEGY  197 (254)
Q Consensus       136 T~v~r~~~es~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~s~~eY  197 (254)
                      ++  ...........|..|+..|.-        ..++|||+|.+.+.+|++.||+++.+...
T Consensus        79 ~~--~~~~~~~~gevD~~I~~~A~~--------~~~~lvT~D~~l~~~A~~~GI~V~~l~~~  130 (602)
T PRK13764         79 TL--EQIKLAKGGEIDALIREVAKE--------LGATLVTSDRVQAEVARAKGIDVIYLKPE  130 (602)
T ss_pred             ch--hhcccccCCCHHHHHHHHHHH--------cCCEEEeCCHHHHHHHHHcCCEEEEeCCC
Confidence            11  111222335677899998872        25899999999999999999999877654

>COG1412 Uncharacterized proteins of PilT N-term

Probab=97.61  E-value=0.00016  Score=59.23  Aligned_cols=104  Identities=18%  Similarity=0.236  Sum_probs=65.8

Q ss_pred             CCCeEEEechHHHhhc----hhhcc---CC-CC-CceeeeHHHHHHHhcCCh--hHHHH--HHHHhcCCCCcEEEEeCCc
Q psy4844          66 MEPHYLLLDTNIILEQ----IDILE---EP-TL-CNVILVQTILQEVKHRSS--SVYKR--LKDLISNPSRKFYVFVNEH  132 (254)
Q Consensus        66 ~~~~~lVpDtnvll~~----~d~le---~~-~~-~~VII~qTVleev~~rs~--~~y~R--Lr~li~~~~~~~~vF~Ne~  132 (254)
                      ..+.-+|+|||+++.-    +|+++   .. .. ..+.||++|++|+..-..  +.-.|  +....-. +-.+.     |
T Consensus         8 ~~~~~VlvDTNfl~~~~q~~vdi~~~l~r~l~~~~~~~Ip~~Vi~EL~~l~~~~~~~~r~~ia~~~~e-r~~~~-----~   81 (136)
T COG1412           8 RKPYQVLVDTNFLLYPYQFKVDIFEELERLLGAKYKPAIPSCVIRELEKLKRKHRGKARIAIALKYAE-RLECI-----H   81 (136)
T ss_pred             CCceEEEecchHHHHHHHccCCHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchHHHHHHHHHhh-ccCcc-----c
Confidence            3466789999999754    33333   22 23 479999999999985221  11111  2222110 11111     1


Q ss_pred             cccccccCCCCCCcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcceeeHH
Q psy4844         133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIE  195 (254)
Q Consensus       133 ~~~T~v~r~~~es~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~s~~  195 (254)
                                  + ....|-+|+.+|.-+.       .+++.|||.++++++++.||++++++
T Consensus        82 ------------~-~~~aDe~i~~~a~~~~-------~~iVaTnD~eLk~rlr~~GIPvi~lr  124 (136)
T COG1412          82 ------------K-GRYADECLLEAALKHG-------RYIVATNDKELKRRLRENGIPVITLR  124 (136)
T ss_pred             ------------c-CCChHHHHHHHHHHcC-------CEEEEeCCHHHHHHHHHcCCCEEEEe
Confidence                        1 1122778988886443       58999999999999999999999876

/Vapc superfamily [General function prediction only]

>PRK12496 hypothetical protein; Provisional

Probab=96.35  E-value=0.01  Score=50.11  Aligned_cols=110  Identities=17%  Similarity=0.173  Sum_probs=64.7

Q ss_pred             EEEechHHHhhchhhccCCCCCceeeeHHHHHHHhcCChhHHHHHHHHhcCCCCcEEEEeCCccccccccC---CCCCC-
Q psy4844          70 YLLLDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEHHYETYVEQ---EPGES-  145 (254)
Q Consensus        70 ~lVpDtnvll~~~d~le~~~~~~VII~qTVleev~~rs~~~y~RLr~li~~~~~~~~vF~Ne~~~~T~v~r---~~~es-  145 (254)
                      ++|+||+.|++-..+    ....+++|..|++||+....  -.++..++..  +.+.|-.-+.-.-..+.+   ..|.. 
T Consensus         3 ~~VlDtS~~I~~~~~----~~~~i~tp~~V~~Ev~d~~~--~~~~~~l~~~--~~i~v~~p~~~~i~~v~~~a~~tgd~~   74 (164)
T PRK12496          3 IKVLDASAFIHGYNP----EDGEHYTTPSVVEEVKDKES--RLILESAISA--GKLKILEPSPESIEKVEEAAIKTGDLM   74 (164)
T ss_pred             EEEEEChHHHccchh----hCCCEEecHHHHHHHhCHHH--HHHHHHhccc--CCeEEECCCHHHHHHHHHHHHhcCCcc
Confidence            689999999977553    24679999999999997432  2233333321  223322111100000111   11110 


Q ss_pred             cCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcceeeHH
Q psy4844         146 VNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIE  195 (254)
Q Consensus       146 ~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~s~~  195 (254)
                      .....|-.+++.|.-+        ..+|||+|...+.-|+..||.+.++.
T Consensus        75 ~Ls~~D~~~iaLA~el--------~~~lvtDD~~~~~vA~~lgi~v~~~~  116 (164)
T PRK12496         75 RLSNTDIEVLALALEL--------NGTLYTDDYGIQNVAKKLNIKFENIK  116 (164)
T ss_pred             ccchhhHHHHHHHHHh--------CCcEECcHHHHHHHHHHcCCeEeccc
Confidence            1233455555554433        25799999999999999999988876

>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]

Probab=95.66  E-value=0.055  Score=50.05  Aligned_cols=111  Identities=20%  Similarity=0.312  Sum_probs=70.2

Q ss_pred             eEEEechHHHhhc--hhhccCC-CCCceeeeHHHHHHHhc--------------CChhHHHHHHHHhcCCCCcEEEEeCC
Q psy4844          69 HYLLLDTNIILEQ--IDILEEP-TLCNVILVQTILQEVKH--------------RSSSVYKRLKDLISNPSRKFYVFVNE  131 (254)
Q Consensus        69 ~~lVpDtnvll~~--~d~le~~-~~~~VII~qTVleev~~--------------rs~~~y~RLr~li~~~~~~~~vF~Ne  131 (254)
                      ..-|+||+++++-  .|+++-- -.-++||||=||+|+||              |...+-+++++...   -+..++.-+
T Consensus       161 ~~KILDTSvIIDGRI~di~~TGFleG~iiiP~FVL~ELQ~iADssD~lKR~RGRRGLdILn~iqk~~~---~~v~I~~~D  237 (356)
T COG4956         161 KPKILDTSVIIDGRIADILQTGFLEGTIIIPQFVLLELQHIADSSDDLKRNRGRRGLDILNEIQKEDP---IQVEIYEGD  237 (356)
T ss_pred             CCeEeeeceEEcchHHHHHHhCCccceEeeeHHHHHHHHHHhhccchhhhhcccchhHHHHHHHhhCC---CcEEEccCC
Confidence            3668899999864  5666543 34569999999999996              23334555544331   122211111


Q ss_pred             ccccccccCCCCCCcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcceeeHHHHHHhCC
Q psy4844         132 HHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEGYISTLS  202 (254)
Q Consensus       132 ~~~~T~v~r~~~es~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~s~~eYv~~~~  202 (254)
                      |           |...+ -|-.+++-|+-+        .=.+||||.|+-+-|.=.|++++++.|..+.++
T Consensus       238 f-----------~di~e-VD~KLvklAk~~--------~g~lvTND~NLnKVae~qgV~vLNINDLAnAVk  288 (356)
T COG4956         238 F-----------EDIPE-VDSKLVKLAKVT--------GGKLVTNDFNLNKVAELQGVQVLNINDLANAVK  288 (356)
T ss_pred             c-----------cchhh-HHHHHHHHHHHh--------CCEEEeccCcHHHHHhhcCCceecHHHHHHHhC
Confidence            1           11111 133444444333        246899999999999999999999999999863

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=95.64  E-value=0.046  Score=53.25  Aligned_cols=111  Identities=23%  Similarity=0.346  Sum_probs=77.2

Q ss_pred             eEEEechHHHhhc--hhhccCCCCC--ceeeeHHHHHHHhcC----------ChhHHHHHHHHhcCCCCcEEEEeCCccc
Q psy4844          69 HYLLLDTNIILEQ--IDILEEPTLC--NVILVQTILQEVKHR----------SSSVYKRLKDLISNPSRKFYVFVNEHHY  134 (254)
Q Consensus        69 ~~lVpDtnvll~~--~d~le~~~~~--~VII~qTVleev~~r----------s~~~y~RLr~li~~~~~~~~vF~Ne~~~  134 (254)
                      ..+||||+|++.-  -..+++-.+.  +||||..|+.|+-++          .+...++|+++- +.+.--..|.++--.
T Consensus         5 ~~~v~DtSvivdGr~t~~v~~G~~~g~~viipeAvvsele~qAn~Gr~~G~~gLeEL~kL~~l~-~~g~i~~~~~gerp~   83 (604)
T COG1855           5 MKYVPDTSVIVDGRITEYVESGEIEGATVIIPEAVVSELEAQANRGREIGFAGLEELKKLRDLA-DEGKIELEFVGERPT   83 (604)
T ss_pred             cEEeccceEEEccchhhhhhhCcccccEEEeeHHHHHHHHHHhccchhhhhhHHHHHHHHHHHH-hcCcEEEEEEeccCc
Confidence            4789999999875  5566755444  599999999999853          134456677766 444456778887554


Q ss_pred             cccccCCCCCCcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCccee
Q psy4844         135 ETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTS  192 (254)
Q Consensus       135 ~T~v~r~~~es~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~  192 (254)
                      .-.+.+..    ...-|..|+.+|.-|.        -+|||.|.-.+.-|++.||.+.
T Consensus        84 ~~~Ik~ak----~GEid~miR~vA~e~~--------a~lVTsD~vQ~~va~a~Giev~  129 (604)
T COG1855          84 LEEIKRAK----SGEIDAMIREVALEYG--------ATLVTSDRVQRDVARAKGIEVE  129 (604)
T ss_pred             hhhhcccc----cccHHHHHHHHHHHhC--------cEEEechHHHHHHHHhcCceEE
Confidence            33333322    2233667888876553        5899999999999999999874

>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins

Probab=90.69  E-value=0.51  Score=36.22  Aligned_cols=85  Identities=14%  Similarity=0.161  Sum_probs=51.5

Q ss_pred             CCceeeeHHHHHHHhcCChhHHHHHHHHhcCCCCcEEEEeCCccccccccCCCCCCcCCcccHHHHHHHHHHHHHhCcCc
Q psy4844          90 LCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAV  169 (254)
Q Consensus        90 ~~~VII~qTVleev~~rs~~~y~RLr~li~~~~~~~~vF~Ne~~~~T~v~r~~~es~~drndr~I~~aa~wY~~Hl~~~~  169 (254)
                      -..++||+-|++|++.-+.. +.+-..+.+.  ..+-..-.+|.. +          ....|.+|...|.   +    ..
T Consensus         7 ~~~~~vt~cVl~EL~~L~~~-~~~~~~~a~~--~~~~~~~c~h~~-~----------~~~addci~~~~~---~----~~   65 (101)
T PF04900_consen    7 KVKPYVTQCVLEELESLGKK-FKGALRIAKR--KALERRKCNHKE-T----------PGSADDCILDLAG---K----NN   65 (101)
T ss_pred             ccEEEecHHHHHHHHHhccc-ccchhhhhhc--hhhHhhcCCCCC-C----------CcCHHHHHHHHhc---c----CC
Confidence            35689999999999975522 2221122211  112222222221 1          2235678887774   2    12


Q ss_pred             eEEEEeCChhhHHHHH-hcCcceeeHH
Q psy4844         170 RVILLSEDVRNRDLAT-QSGLLTSSIE  195 (254)
Q Consensus       170 ~VvlvT~D~~~~~ka~-~~gi~~~s~~  195 (254)
                      ..++.|+|.+++.+.+ ..|++++.+.
T Consensus        66 ~~~VaT~D~~Lr~~lr~~~GvPvi~l~   92 (101)
T PF04900_consen   66 KYIVATQDKELRRRLRKIPGVPVIYLR   92 (101)
T ss_pred             eEEEEecCHHHHHHHhcCCCCCEEEEE
Confidence            2888899999999999 7899998765

>PF14367 DUF4411: Domain of unknown function (DUF4411)

Probab=85.88  E-value=0.62  Score=38.99  Aligned_cols=36  Identities=31%  Similarity=0.462  Sum_probs=25.2

Q ss_pred             EechHHHhh-----ch-hh-------ccCC-CCCceeeeHHHHHHHhcCC
Q psy4844          72 LLDTNIILE-----QI-DI-------LEEP-TLCNVILVQTILQEVKHRS  107 (254)
Q Consensus        72 VpDtnvll~-----~~-d~-------le~~-~~~~VII~qTVleev~~rs  107 (254)
                      ++|||+++.     |+ |+       |+.. ....++++..|.+|+...+
T Consensus         2 llDtN~~I~a~~~yY~~d~~p~fW~~L~~~~~~g~i~~~~~V~~El~~~~   51 (162)
T PF14367_consen    2 LLDTNVFIQAWNRYYPFDIFPSFWDWLEQLIESGRIISPDEVYDELERGD   51 (162)
T ss_pred             ccchHHHHHHHHhcCCchHHHHHHHHHHHHHhCCeEeehHHHHHHHhhCC
Confidence            579999983     22 33       2221 4567999999999999764

>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]

Probab=83.39  E-value=2.3  Score=36.44  Aligned_cols=113  Identities=24%  Similarity=0.285  Sum_probs=64.3

Q ss_pred             EEEechHHHhhc-hhhccCCCCCceeeeHHHHHHHhcCChhHHHHHHHHhcCCCCcEEEE-eCCcccccc--ccCCCCCC
Q psy4844          70 YLLLDTNIILEQ-IDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVF-VNEHHYETY--VEQEPGES  145 (254)
Q Consensus        70 ~lVpDtnvll~~-~d~le~~~~~~VII~qTVleev~~rs~~~y~RLr~li~~~~~~~~vF-~Ne~~~~T~--v~r~~~es  145 (254)
                      ..|+||.++++- ++++.+-.   .+-...|++|++.+..+  ..+..++.  .+++-+- .|....+--  ..+..++.
T Consensus         8 ~~vlDtsa~I~g~~~~~~~g~---~yttp~Vv~Eikd~~s~--~~~e~~~~--~~~~kv~~P~~e~vk~V~e~a~~tgd~   80 (177)
T COG1439           8 LYVLDTSAFINGKIPLLLDGR---LYTTPSVVEEIKDRESR--SLLELLLE--SGKVKVAEPSTEYVKEVREAAKKTGDL   80 (177)
T ss_pred             eEEecchhhccCCCCcccCCc---ccccHHHHHHHhchhhh--HHHHHHhh--hcCeeEecCCHHHHHHHHHHHHhhCcc
Confidence            678899999986 66663322   33344999999987654  22333332  1222222 122111000  00111221


Q ss_pred             -cCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcceee
Q psy4844         146 -VNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSS  193 (254)
Q Consensus       146 -~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~s  193 (254)
                       ...-.|-.+++.|.-+...    ..|+++|+|....--|...||..++
T Consensus        81 ~~LS~tDi~VlalAlel~~~----~~v~l~TdDysvQNVa~~Lgi~~~~  125 (177)
T COG1439          81 GNLSPTDIEVLALALELGEE----VQVALATDDYSVQNVALQLGLNVRS  125 (177)
T ss_pred             cccChhhHHHHHHHHhhccc----cceeEEecchHHHHHHHHhCceEEe
Confidence             1122355566666555442    5599999999999999999999876

>COG1569 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]

Probab=82.60  E-value=0.99  Score=37.21  Aligned_cols=121  Identities=17%  Similarity=0.215  Sum_probs=61.6

Q ss_pred             EEechHHHhhchh-----------hccCCCCCceeeeHHHHHHHhcCChhHHHHHHHHhcCCCC-cEEEEeCCccccccc
Q psy4844          71 LLLDTNIILEQID-----------ILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSR-KFYVFVNEHHYETYV  138 (254)
Q Consensus        71 lVpDtnvll~~~d-----------~le~~~~~~VII~qTVleev~~rs~~~y~RLr~li~~~~~-~~~vF~Ne~~~~T~v  138 (254)
                      +|.||||++..+=           ++....+ ..+...+.++|+.....  |-++++-+..... ..+.-..+......+
T Consensus         3 VViDTNV~isaLi~p~Gl~~~l~~ll~~~~i-~n~tS~eil~El~~v~~--~pKl~k~l~~e~~~~~v~~l~~~~~~i~I   79 (142)
T COG1569           3 VVIDTNVWISALISPGGLPGELISLLIKEKI-ENYTSEEILDELEEVLS--YPKLKKYLPLEVLGELVLVLFESVSLIAI   79 (142)
T ss_pred             EEEEhhHHHHHHhCCCCCcHHHHHHHhhCce-EEEecHHHHHHHHHHHh--hHHHHhhcchHHHHHHHHHHHHhheeEee
Confidence            5789999986541           2222223 45677889999864321  1122222211100 000000111111111


Q ss_pred             cCCC-CCCcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcC-cceeeHHHHHHhC
Q psy4844         139 EQEP-GESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSG-LLTSSIEGYISTL  201 (254)
Q Consensus       139 ~r~~-~es~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~g-i~~~s~~eYv~~~  201 (254)
                      .+.. -+.-.|.+|+..++.|  |..     ..=+|||.|.++...=-..+ +.++|..||++.+
T Consensus        80 ~p~~~f~~~RDp~Dn~~L~~A--~~~-----kA~~lvTgD~dLL~lr~~n~~~~Iltp~eF~~~~  137 (142)
T COG1569          80 NPLEKFNICRDPKDNKLLALA--YES-----KADYLVTGDQDLLVLRDENKRVEILTPQEFLEEV  137 (142)
T ss_pred             cccccccccCCchHHHHHHHH--Hhc-----cCCEEEEcchhhheecccCCcEEEcCHHHHHHHH
Confidence            1111 2345677788877665  222     22377899987655444444 8899999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	254
2wp8_J	977	Yeast Rrp44 Nuclease Length = 977		1e-37
4ifd_J	1003	Crystal Structure Of An 11-subunit Eukaryotic Exoso		4e-37

>pdb|2WP8|J Chain J, Yeast Rrp44 Nuclease Length = 977

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/254 (36%), Positives = 145/254 (57%), Gaps = 13/254 (5%)
Query: 6   VQSSVWLVMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKY 65
           V+S      KIVREHYLR D+ C S  C  C  +  + D      K IL   P   S   
Sbjct: 1   VRSRNGGATKIVREHYLRSDIPCLSRSCTKC-PQIVVPDAQNELPKFILSDSPLELSAP- 58
Query: 66  MEPHYLLLDTNIILEQIDILEEPT-LCNVILVQTILQEVKHRSSSVYKRLKDLI--SNPS 122
           +  HY++LDTN++L+ ID+LE P    +VI+ Q +L EV+++S  VY RL+ L   S+  
Sbjct: 59  IGKHYVVLDTNVVLQAIDLLENPNCFFDVIVPQIVLDEVRNKSYPVYTRLRTLCRDSDDH 118
Query: 123 RKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLES-AVRVILLSEDVRNR 181
           ++F VF NE    T+VE+ P E++NDRNDRA+R+   WY EHL+   + V+L++ D  NR
Sbjct: 119 KRFIVFHNEFSEHTFVERLPNETINDRNDRAIRKTCQWYSEHLKPYDINVVLVTNDRLNR 178
Query: 182 DLAT---QSGLLTSSIEGYISTLSNGEPLLDKLSKKEAVVETSVKDSL----YPLHATPS 234
           + AT   +S ++T S+  YI  L N + + D + + ++  +   +D+     +P + + +
Sbjct: 179 EAATKEVESNIITKSLVQYIELLPNADDIRDSIPQMDSFDKDLERDTFSDFTFPEYYSTA 238
Query: 235 EIHAGIKNQSLLQG 248
            +  G+KN  L QG
Sbjct: 239 RVMGGLKNGVLYQG 252

>pdb|4IFD|J Chain J, Crystal Structure Of An 11-subunit Eukaryotic Exosome Complex Bound To Rna Length = 1003

Iteration: 1
 Score =  151 bits (381), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/254 (36%), Positives = 145/254 (57%), Gaps = 13/254 (5%)
Query: 6   VQSSVWLVMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKY 65
           V+S      KIVREHYLR D+ C S  C  C  +  + D      K IL   P   S   
Sbjct: 27  VRSRNGGATKIVREHYLRSDIPCLSRSCTKC-PQIVVPDAQNELPKFILSDSPLELSAP- 84
Query: 66  MEPHYLLLDTNIILEQIDILEEPT-LCNVILVQTILQEVKHRSSSVYKRLKDLI--SNPS 122
           +  HY++LDTN++L+ ID+LE P    +VI+ Q +L EV+++S  VY RL+ L   S+  
Sbjct: 85  IGKHYVVLDTNVVLQAIDLLENPNCFFDVIVPQIVLDEVRNKSYPVYTRLRTLCRDSDDH 144
Query: 123 RKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLES-AVRVILLSEDVRNR 181
           ++F VF NE    T+VE+ P E++NDRN+RA+R+   WY EHL+   + V+L++ D  NR
Sbjct: 145 KRFIVFHNEFSEHTFVERLPNETINDRNNRAIRKTCQWYSEHLKPYDINVVLVTNDRLNR 204
Query: 182 DLAT---QSGLLTSSIEGYISTLSNGEPLLDKLSKKEAVVETSVKDSL----YPLHATPS 234
           + AT   +S ++T S+  YI  L N + + D + + ++  +   +D+     +P + + +
Sbjct: 205 EAATKEVESNIITKSLVQYIELLPNADDIRDSIPQMDSFDKDLERDTFSDFTFPEYYSTA 264
Query: 235 EIHAGIKNQSLLQG 248
            +  G+KN  L QG
Sbjct: 265 RVMGGLKNGVLYQG 278

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	254
2wp8_J	977	Exosome complex exonuclease DIS3; nucleus, hydrola	3e-82
2dok_A	186	Telomerase-binding protein EST1A; telomerase-assoc	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Length = 977

 Score =  264 bits (676), Expect = 3e-82
 Identities = 84/247 (34%), Positives = 136/247 (55%), Gaps = 13/247 (5%)

Query: 13  VMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLL 72
             KIVREHYLR D+ C S  C  C   + ++          +           +  HY++
Sbjct: 8   ATKIVREHYLRSDIPCLSRSCTKC--PQIVVPDAQNELPKFILSDSPLELSAPIGKHYVV 65

Query: 73  LDTNIILEQIDILEEP-TLCNVILVQTILQEVKHRSSSVYKRLKDLI--SNPSRKFYVFV 129
           LDTN++L+ ID+LE P    +VI+ Q +L EV+++S  VY RL+ L   S+  ++F VF 
Sbjct: 66  LDTNVVLQAIDLLENPNCFFDVIVPQIVLDEVRNKSYPVYTRLRTLCRDSDDHKRFIVFH 125

Query: 130 NEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHL-ESAVRVILLSEDVRNRDLA---T 185
           NE    T+VE+ P E++NDRNDRA+R+   WY EHL    + V+L++ D  NR+ A    
Sbjct: 126 NEFSEHTFVERLPNETINDRNDRAIRKTCQWYSEHLKPYDINVVLVTNDRLNREAATKEV 185

Query: 186 QSGLLTSSIEGYISTLSNGEPLLDKLSKKEAVVETSVKDS----LYPLHATPSEIHAGIK 241
           +S ++T S+  YI  L N + + D + + ++  +   +D+     +P + + + +  G+K
Sbjct: 186 ESNIITKSLVQYIELLPNADDIRDSIPQMDSFDKDLERDTFSDFTFPEYYSTARVMGGLK 245

Query: 242 NQSLLQG 248
           N  L QG
Sbjct: 246 NGVLYQG 252

>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A Length = 186

 Score = 45.5 bits (107), Expect = 3e-06
 Identities = 23/175 (13%), Positives = 50/175 (28%), Gaps = 38/175 (21%)

Query: 68  PHYLLLDTNIILEQIDILE---EPTLCNVILVQTILQEV-----KHRSSSVYKRLKDLIS 119
           P +L+ DTN  ++ +  L    E     +++   ++ E+        +         ++ 
Sbjct: 12  PLFLVPDTNGFIDHLASLARLLESRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQ 71

Query: 120 NPSRKFYVFVNEHH-----------------YETYVEQEPGESVNDRNDRALRRVATWYE 162
             +RK   F+ +                          E        ND  +      Y 
Sbjct: 72  EKARKSIEFLEQRFESRDSCLRALTSRGNELESIAFRSEDITGQLGNNDDLILSCCLHYC 131

Query: 163 EH-------------LESAVRVILLSEDVRNRDLATQSGLLTSSIEGYISTLSNG 204
           +              +     V+LL++D   R  A    +    I  +++    G
Sbjct: 132 KDKAKDFMPASKEEPIRLLREVVLLTDDRNLRVKALTRNVPVRDIPAFLTWAQVG 186

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 5e-05
 Identities = 48/287 (16%), Positives = 87/287 (30%), Gaps = 78/287 (27%)

Query: 11  WLVMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHY 70
           WL +K          L    +L    D          ++ K  +  I     +      Y
Sbjct: 186 WLNLKNCNSP--ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 71  ----LLLDTNI----ILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPS 122
               L+L  N+         ++      C  IL+ T       R   V     D +S  +
Sbjct: 244 ENCLLVLL-NVQNAKAWNAFNLS-----CK-ILLTT-------RFKQVT----DFLSAAT 285

Query: 123 RKFYVFVNEHHYETYVEQE------------------------P------GESVNDRNDR 152
                   +HH  T    E                        P       ES+ D    
Sbjct: 286 TT--HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 153 A--LRRVATW-YEEHLESAVRVILLSEDVRNR--DLAT--QSGLLTSSIEGYISTL---- 201
               + V        +ES++ V L   + R     L+    S  + + +   +S +    
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNV-LEPAEYRKMFDRLSVFPPSAHIPTIL---LSLIWFDV 399

Query: 202 --SNGEPLLDKLSKKEAVVETSVKDSLYPLHATPSEIHAGIKNQSLL 246
             S+   +++KL K  ++VE   K+S   + +   E+   ++N+  L
Sbjct: 400 IKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	254
2wp8_J	977	Exosome complex exonuclease DIS3; nucleus, hydrola	100.0
2dok_A	186	Telomerase-binding protein EST1A; telomerase-assoc	99.87
2hwy_A	164	Protein SMG5; RNA degradation, decay, NMD, EST1A,	98.99
3ix7_A	134	Uncharacterized protein TTHA0540; unknown function	98.58
3i8o_A	142	KH domain-containing protein MJ1533; APC89320.5, m	98.3
1o4w_A	147	PIN (PILT N-terminus) domain; structural genomics,	97.52
2lcq_A	165	Putative toxin VAPC6; PIN domain, Zn ribbon domain	97.15
1v96_A	149	Hypothetical protein PH0500; rossmann fold, tRNA s	91.03

>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-65  Score=525.67  Aligned_cols=246  Identities=37%  Similarity=0.620  Sum_probs=189.6

Q ss_pred             EEcccCceeEeeeeeeccCCcCcCCCcCcccccchhccccCCCCCccccCCCCCCCCCCCCCCeEEEechHHHhhchhhc
Q psy4844           6 VQSSVWLVMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLLLDTNIILEQIDIL   85 (254)
Q Consensus         6 ~ktr~G~v~kvvrE~YLRdDI~Cg~~~C~~C~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lVpDtnvll~~~d~l   85 (254)
                      ||||+|+|+|+|||||||||||||+++|..|... .+.++++....++|+..|.. ++.++.+||+||||||+|||||+|
T Consensus         1 ~~t~~g~~~k~vrE~YlR~Di~C~~~~C~~C~~~-~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~i~d~~v~l~~~d~l   78 (977)
T 2wp8_J            1 VRSRNGGATKIVREHYLRSDIPCLSRSCTKCPQI-VVPDAQNELPKFILSDSPLE-LSAPIGKHYVVLDTNVVLQAIDLL   78 (977)
T ss_dssp             -----------CCCCCCBSCCCCCBTTCSSGGGT-CCCCTTSCCCCCCBCSSCCB-CSTTTSBEEEEECHHHHHHHHHHH
T ss_pred             CccccCcEEEEEcceeccCCcCcCCCCCcccccc-ccccccccccccccccCccc-cccCCCCeEEEecHHHHHHHHHHh
Confidence            6899999999999999999999999999999765 23445555556678877753 445678999999999999999999


Q ss_pred             cCC-CCCceeeeHHHHHHHhcCChhHHHHHHHHhcCCC--CcEEEEeCCccccccccCCCCCCcCCcccHHHHHHHHHHH
Q psy4844          86 EEP-TLCNVILVQTILQEVKHRSSSVYKRLKDLISNPS--RKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYE  162 (254)
Q Consensus        86 e~~-~~~~VII~qTVleev~~rs~~~y~RLr~li~~~~--~~~~vF~Ne~~~~T~v~r~~~es~~drndr~I~~aa~wY~  162 (254)
                      |++ .+.|||||||||+||+++|.+.|+|||+|+++++  ++||||+||||.+||++|.++||+||||||+|++||.||+
T Consensus        79 e~~~~~~~vii~qtv~~~v~~~~~~~y~rl~~l~~~~~~~~~~~vF~ne~~~~t~~~~~~~es~~~r~~r~i~~~~~wy~  158 (977)
T 2wp8_J           79 ENPNCFFDVIVPQIVLDEVRNKSYPVYTRLRTLCRDSDDHKRFIVFHNEFSEHTFVERLPNETINDRNDRAIRKTCQWYS  158 (977)
T ss_dssp             TCTTTCCEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCCSSCEEEEECTTTBTTTCCC-------CCHHHHHHHHHHHHHH
T ss_pred             hcccccCCEEEEHHHHHHHHhcCHHHHHHHHHHhcCcCcCceEEEEccccchhhcccCccCCChhhhhHHHHHHHHHHHH
Confidence            999 9999999999999999999999999999999999  9999999999999999999999999999999999999999


Q ss_pred             HHhCc-CceEEEEeCChhhHHHHHh---cCcceeeHHHHHHhCCCchhhhhhhcccch---h-hccCCCCCCCCCCCCHH
Q psy4844         163 EHLES-AVRVILLSEDVRNRDLATQ---SGLLTSSIEGYISTLSNGEPLLDKLSKKEA---V-VETSVKDSLYPLHATPS  234 (254)
Q Consensus       163 ~Hl~~-~~~VvlvT~D~~~~~ka~~---~gi~~~s~~eYv~~~~~~~~L~D~l~~~~~---~-~~~~~~~~~y~ehL~~~  234 (254)
                      +||+. .++|||||+|.+|+.+|++   +|+.++|+.||+++++++++|+|+|+....   + .+.+.++.+|+||||++
T Consensus       159 ~hl~~~~~~vv~~t~d~~~~~~~~~~~~~~~~~~s~~~y~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~f~~yl~~~  238 (977)
T 2wp8_J          159 EHLKPYDINVVLVTNDRLNREAATKEVESNIITKSLVQYIELLPNADDIRDSIPQMDSFDKDLERDTFSDFTFPEYYSTA  238 (977)
T ss_dssp             HHHGGGTCEEEEEECC-----------CCCSCEEEHHHHHHTSTTTTCCCCC------------------CCCCCCCCHH
T ss_pred             HhccccCCCEEEEeCCHHHHHHHhhhccCCcEEEEHHHHHHhccCcHHHHHHHhhhccccccccccccccCcCcCcCCHH
Confidence            99964 6899999999999999999   999999999999999999999999975541   1 11124577999999999


Q ss_pred             HHHhhhhcCceEEEEEEEE
Q psy4844         235 EIHAGIKNQSLLQGMNLYL  253 (254)
Q Consensus       235 ~i~~Gik~G~l~qG~l~v~  253 (254)
                      +|.+||++|++++|+|+++
T Consensus       239 ~l~~~l~~g~l~~G~l~v~  257 (977)
T 2wp8_J          239 RVMGGLKNGVLYQGNIQIS  257 (977)
T ss_dssp             HHHHHHHTTSSEEEEEEEC
T ss_pred             HHHHHHHcCCEEEEEEEEc
Confidence            9999999999999999985

>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A

Probab=99.87  E-value=3.6e-24  Score=181.98  Aligned_cols=134  Identities=15%  Similarity=0.180  Sum_probs=92.4

Q ss_pred             CeEEEechHHHhhchhhccCCC---CCceeeeHHHHHHHhcC-------------------ChhHHHH-HHHHhcCCCCc
Q psy4844          68 PHYLLLDTNIILEQIDILEEPT---LCNVILVQTILQEVKHR-------------------SSSVYKR-LKDLISNPSRK  124 (254)
Q Consensus        68 ~~~lVpDtnvll~~~d~le~~~---~~~VII~qTVleev~~r-------------------s~~~y~R-Lr~li~~~~~~  124 (254)
                      ++|+|||||||+|+++.|+.+.   +.+||||+||++||++.                   ++|...| |.+.++.....
T Consensus        12 ~~~~VlDTNvLl~~~~~l~~~~~~~~~~viIP~~VleELd~lk~~~~~~~~~~~~~~~~~~~AR~a~~~L~~~~~~~~~~   91 (186)
T 2dok_A           12 PLFLVPDTNGFIDHLASLARLLESRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLEQRFESRDSC   91 (186)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHTSSEEEEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             CCEEEEEhHHHHcCHHHHHHHHcCCCeEEEECHHHHHHHHHhccCCCccccccchhHHHHHHHHHHHHHHHHHHhhCCCe
Confidence            5899999999999999999873   58999999999999972                   1222222 22233332222


Q ss_pred             EEEEeCC-cccc-ccccCCCCCCcCCcccHHHHHHHHHHHHHhCc-------------CceEEEEeCChhhHHHHHhcCc
Q psy4844         125 FYVFVNE-HHYE-TYVEQEPGESVNDRNDRALRRVATWYEEHLES-------------AVRVILLSEDVRNRDLATQSGL  189 (254)
Q Consensus       125 ~~vF~Ne-~~~~-T~v~r~~~es~~drndr~I~~aa~wY~~Hl~~-------------~~~VvlvT~D~~~~~ka~~~gi  189 (254)
                      ...-... .... ........++.++++|++|+++|.||++|++.             ..+|||||+|.+++.||.+.||
T Consensus        92 i~~~~~~g~~l~~v~~~~~~~~~~~~~~D~~IL~~a~~l~~~~~~~~~~~~~~~~~~~~~~vvLvTnD~nLr~KA~~~Gi  171 (186)
T 2dok_A           92 LRALTSRGNELESIAFRSEDITGQLGNNDDLILSCCLHYCKDKAKDFMPASKEEPIRLLREVVLLTDDRNLRVKALTRNV  171 (186)
T ss_dssp             EEEECTTSCEESCCTTCCCCC----CCHHHHHHHHHHTTCCCCGGGGCCC---CCCEEEEEEEEECCCHHHHHHHHHTTC
T ss_pred             EEEEeccCcccccccccccccccCCCCccHHHHHHHHHHHHhcccccccccccccccCCCcEEEEeCcHHHHHHHHHCCC
Confidence            2211110 0000 00112223356789999999999999988742             3589999999999999999999


Q ss_pred             ceeeHHHHHHhC
Q psy4844         190 LTSSIEGYISTL  201 (254)
Q Consensus       190 ~~~s~~eYv~~~  201 (254)
                      +++++.||+++.
T Consensus       172 ~~~~~~~~~~~~  183 (186)
T 2dok_A          172 PVRDIPAFLTWA  183 (186)
T ss_dssp             CEECHHHHHHHH
T ss_pred             eeCcHHHHHHHh
Confidence            999999999863

>2hwy_A Protein SMG5; RNA degradation, decay, NMD, EST1A, P bodies, RNA binding protein; 2.75A {Homo sapiens}

Probab=98.99  E-value=4.7e-10  Score=93.19  Aligned_cols=132  Identities=10%  Similarity=0.075  Sum_probs=77.5

Q ss_pred             eEEEechHHHhhchhhccCC---CCCceeeeHHHHHHHhc-----CChhHHHH-HHHHhcCCCCcEEEEe-CCccccccc
Q psy4844          69 HYLLLDTNIILEQIDILEEP---TLCNVILVQTILQEVKH-----RSSSVYKR-LKDLISNPSRKFYVFV-NEHHYETYV  138 (254)
Q Consensus        69 ~~lVpDtnvll~~~d~le~~---~~~~VII~qTVleev~~-----rs~~~y~R-Lr~li~~~~~~~~vF~-Ne~~~~T~v  138 (254)
                      .|+|||||++++++.+++..   .-..||||.||++|++.     +.+|...| |.+.++...+.+..=. ++...++- 
T Consensus         3 ~ylVlDTN~Li~~l~~i~~l~~~~~~~IvIP~~Vi~ELD~LK~~~~~AR~Air~Le~~~~~~~~~lr~Q~~~~~~~~~~-   81 (164)
T 2hwy_A            3 PYLVPDTQALCHHLPVIRQLATSGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQKEVGKSFERH-   81 (164)
T ss_dssp             CEEEECHHHHHHCHHHHHHHHHHSSSEEEECHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHTCSSEEEC-----------
T ss_pred             ceEEechHHHHhCHHHHHHHHhCCCcEEEEcHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccc-
Confidence            69999999999999999876   55789999999999994     34677777 6666665444443211 22211111 


Q ss_pred             cCCCCCCcCCcccHHHHHHHHHHHHHhC-----cCceEEEEeCCh-----h-------hHHHHHhcCcceeeHHHHHHhC
Q psy4844         139 EQEPGESVNDRNDRALRRVATWYEEHLE-----SAVRVILLSEDV-----R-------NRDLATQSGLLTSSIEGYISTL  201 (254)
Q Consensus       139 ~r~~~es~~drndr~I~~aa~wY~~Hl~-----~~~~VvlvT~D~-----~-------~~~ka~~~gi~~~s~~eYv~~~  201 (254)
                       .......+.+++-.|+.++.+|.+.-+     .+.-|+++|+|.     +       ....|.+.|+.+.++.+|....
T Consensus        82 -~~~~~D~~~~~~d~IL~CC~~l~~~~~~~~~~~~~~VtlLtg~~l~~~~~~s~~~~~~~~~a~~~~v~i~~i~~F~~~w  160 (164)
T 2hwy_A           82 -KLKRQDADAWTLYKILDSCKQLTLAQGAGEEDPSGMVTIITGLPLDNPSVLSGPMQAALQAAAHASVDIKNVLDFYKQW  160 (164)
T ss_dssp             ------------CHHHHHHHHHHSSCC----------------CEEEECSCCCC----CHHHHHSTTSEECCHHHHHHHC
T ss_pred             -ccccCCccccchhHHHHHHHHHHhccCCCccCcCCEEEEEeCCcccccccCcHHHHHHHHHhhhCCCchhHHHHHHHHH
Confidence             111222345777899999999975532     134588899976     1       1455777999999999998765


Q ss_pred             C
Q psy4844         202 S  202 (254)
Q Consensus       202 ~  202 (254)
                      .
T Consensus       161 k  161 (164)
T 2hwy_A          161 K  161 (164)
T ss_dssp             -
T ss_pred             h
Confidence            3

>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}

Probab=98.58  E-value=4.6e-07  Score=72.95  Aligned_cols=108  Identities=18%  Similarity=0.222  Sum_probs=73.6

Q ss_pred             eEEEechHHHhhc--hhhccCC-CCCceeeeHHHHHHHhcCC------h--------hHHHHHHHHhcCCCCcEEEEeCC
Q psy4844          69 HYLLLDTNIILEQ--IDILEEP-TLCNVILVQTILQEVKHRS------S--------SVYKRLKDLISNPSRKFYVFVNE  131 (254)
Q Consensus        69 ~~lVpDtnvll~~--~d~le~~-~~~~VII~qTVleev~~rs------~--------~~y~RLr~li~~~~~~~~vF~Ne  131 (254)
                      .+.||||+|+++.  .++++.. -...+|||+.|++|+++..      .        ..-++|++.-    .  +-+..+
T Consensus         6 ~~~vlDTSviIdGri~~~~~~gf~eg~liIP~~Vl~ELq~lA~s~d~~~r~rGr~gL~iL~~L~~~~----~--vei~~~   79 (134)
T 3ix7_A            6 GGKVLDTSVLVDGRVAEVAAVGFLEGPLWVPHFVLKELQHFADSQDPLRRAKGRRGLETLERLREAA----P--LEVLET   79 (134)
T ss_dssp             SCEEECHHHHHHCHHHHHHTTTCCCSCEEEEHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHS----C--EEEECC
T ss_pred             CCeEcccceEEecHHHHHHHhccccCceecHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhcC----C--EEEeCC
Confidence            4678899999998  4555543 3356999999999999632      1        1122222221    2  222222


Q ss_pred             ccccccccCCCCCCcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcceeeHHHHHHhCC
Q psy4844         132 HHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEGYISTLS  202 (254)
Q Consensus       132 ~~~~T~v~r~~~es~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~s~~eYv~~~~  202 (254)
                           +    +   ....-|..|++.|.-+        ..+|+|+|.+++..|+..||+++.+.+..+.+.
T Consensus        80 -----~----~---~~~~vD~~ll~lA~~~--------~~~lvTnD~~L~kvA~~~GI~Vl~l~~l~~al~  130 (134)
T 3ix7_A           80 -----T----P---KGESVDEKLLFLARDL--------EAALVTNDHALLQMARIYGVKALSIQALAQALR  130 (134)
T ss_dssp             -----C----C---SCSSHHHHHHHHHHHT--------TCEEEESCHHHHHHHHHTTCCEEEHHHHHHHTS
T ss_pred             -----C----C---CcccHHHHHHHHHHHh--------CCEEEeCCHHHHHHHHHCCCeEEehHHHHHhhC
Confidence                 1    1   1234578888887544        268999999999999999999999999988763

>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}

Probab=98.30  E-value=3.4e-06  Score=68.44  Aligned_cols=113  Identities=21%  Similarity=0.294  Sum_probs=71.4

Q ss_pred             eEEEechHHHhhch--hhccCCCCC--ceeeeHHHHHHHhc----------CChhHHHHHHHHhcCCCCcEEEEeCCccc
Q psy4844          69 HYLLLDTNIILEQI--DILEEPTLC--NVILVQTILQEVKH----------RSSSVYKRLKDLISNPSRKFYVFVNEHHY  134 (254)
Q Consensus        69 ~~lVpDtnvll~~~--d~le~~~~~--~VII~qTVleev~~----------rs~~~y~RLr~li~~~~~~~~vF~Ne~~~  134 (254)
                      ..+||||+|+++..  ++++...+.  .+|||+.|++|+++          +.....++|+++..+..=.+- |..+.  
T Consensus         4 ~~~vlDTSviIdGrI~~~~~~g~leg~~iiIP~~Vl~EL~~~a~~~r~~GrrGLe~L~~L~~~~~~~~i~ve-i~~~r--   80 (142)
T 3i8o_A            4 KKVCVDTCVVIDGRITELIERGKLKDATIIIPEAVVSELEYQANMGREIGYKGIEELRKLIEKASEHNIKVE-YYGER--   80 (142)
T ss_dssp             CEEEECHHHHHTTHHHHHHHTTTTTTCEEEEEHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTCCEE-EESCC--
T ss_pred             CEEEeecceEEEcHHHHHHHcCCccCCeEEehHHHHHHHHHHHHccchhhHHHHHHHHHHHHHhhccCceEE-Eeccc--
Confidence            46799999999866  556655444  39999999999995          123456667665533211111 22211  


Q ss_pred             ccccc-CCCCCCcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcceeeHH
Q psy4844         135 ETYVE-QEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIE  195 (254)
Q Consensus       135 ~T~v~-r~~~es~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~s~~  195 (254)
                      .++.+ +.+   ....-|..|++.|.-+        .-+|+|+|.++...|+..||+++.+.
T Consensus        81 ~~~~~i~~~---~~~~vD~~l~~lA~~~--------~a~lvTnD~~l~kvA~~~GI~V~~l~  131 (142)
T 3i8o_A           81 PTREEIFLA---KSGEIDAMIRKVAKET--------NSILLTSDWIQYNLAKAQGIEAYFLE  131 (142)
T ss_dssp             CCHHHHHSC---CSSSHHHHHHHHHHHT--------TCEEEESCHHHHHHHHHTTCCEEECC
T ss_pred             Cchhhhccc---cCCcHHHHHHHHHHHh--------CCEEEcCCHHHHHHHHHcCCEEEEec
Confidence            01100 000   1123467777777543        25789999999999999999997764

>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1

Probab=97.52  E-value=0.00026  Score=56.77  Aligned_cols=98  Identities=18%  Similarity=0.236  Sum_probs=65.8

Q ss_pred             EEechHHHhhchhh-------ccCCCCCceeeeHHHHHHHhcC---Ch----hHHHHHHHHhcCCCCcEEEEeCCccccc
Q psy4844          71 LLLDTNIILEQIDI-------LEEPTLCNVILVQTILQEVKHR---SS----SVYKRLKDLISNPSRKFYVFVNEHHYET  136 (254)
Q Consensus        71 lVpDtnvll~~~d~-------le~~~~~~VII~qTVleev~~r---s~----~~y~RLr~li~~~~~~~~vF~Ne~~~~T  136 (254)
                      +|+||||+++.+..       +.......++||..|+.|+..-   ..    ....++.+++...    -+..       
T Consensus        26 vvLDTNvli~~~~~~~~~~~~l~~~l~~~~~I~~~vl~EL~~~~~~~~~~~~~~~~~~~~ll~~~----~vv~-------   94 (147)
T 1o4w_A           26 AVVDTNVLMYVYLNKADVVGQLREFGFSRFLITASVKRELEKLEMSLRGKEKVAARFALKLLEHF----EVVE-------   94 (147)
T ss_dssp             EEECHHHHHHHHHHTCCHHHHHHHTTEEEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTS----EEEC-------
T ss_pred             EEEEhhHHHHHHHcCchHHHHHHHhccCCEEEcHHHHHHHHHHHhccCcchHHHHHHHHHHHhcC----cEee-------
Confidence            78899999987731       1111015799999999998852   11    2344455666432    1110       


Q ss_pred             cccCCCCCCcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcceeeHHH
Q psy4844         137 YVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEG  196 (254)
Q Consensus       137 ~v~r~~~es~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~s~~e  196 (254)
                          .+    .+. |..|.+.|...      +  .+|+|+|.+.+.+|+..|++++++..
T Consensus        95 ----~~----~~~-D~~Ila~A~~~------~--~~LvT~D~~l~~~a~~~Gv~vi~~~~  137 (147)
T 1o4w_A           95 ----TE----SEG-DPSLIEAAEKY------G--CILITNDKELKRKAKQRGIPVGYLKE  137 (147)
T ss_dssp             ----CS----SCS-HHHHHHHHHHH------T--CEEECCCHHHHHHHHHTTCCEECCCC
T ss_pred             ----CC----CCc-hHHHHHHHHHh------C--CEEEECCHHHHHHHHHCCCeEEEecC
Confidence                11    235 89999998742      2  68999999999999999999988763

>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}

Probab=97.15  E-value=0.00021  Score=58.64  Aligned_cols=114  Identities=23%  Similarity=0.321  Sum_probs=71.1

Q ss_pred             eEEEechHHHhhchhhccCCCCCceeeeHHHHHHHhcCChhHHHHHHHHhcCCCCcEEEEeCC-ccccccc--cCCCCC-
Q psy4844          69 HYLLLDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNE-HHYETYV--EQEPGE-  144 (254)
Q Consensus        69 ~~lVpDtnvll~~~d~le~~~~~~VII~qTVleev~~rs~~~y~RLr~li~~~~~~~~vF~Ne-~~~~T~v--~r~~~e-  144 (254)
                      +.+|+|||+|++..++       .+++|..|++|++....+  .+|..+...  +.+.+..-+ .......  .+..++ 
T Consensus        11 ~~~VlDTs~lI~~~~~-------~l~~p~~V~~El~~~~~r--~~l~~l~~~--~~l~v~~~~~~~i~~v~~~~~~~gd~   79 (165)
T 2lcq_A           11 KTLVLDSSVFIQGIDI-------EGYTTPSVVEEIKDRESK--IFLESLISA--GKVKIAEPSKESIDRIIQVAKETGEV   79 (165)
T ss_dssp             SSCEECHHHHHHTCCC-------CEEECHHHHTTCCSSHHH--HHHHHHHHT--TSEEECCCCHHHHHHHHHHHHHHSCS
T ss_pred             cEEEEcChHHHcCCCC-------CEEEChhhHHhhcCHHHH--HHHHHhhcc--CCEEEecCCHHHHHHHHHHHHHcCCc
Confidence            4578899999986632       899999999999864433  245555542  233332111 1000000  011122 


Q ss_pred             CcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcceeeHHHHHHhC
Q psy4844         145 SVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEGYISTL  201 (254)
Q Consensus       145 s~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~s~~eYv~~~  201 (254)
                      ..-+..|-.+++.|.-+    +    ..++|+|.+.+..|+..||.+.++.+.++..
T Consensus        80 ~~Ls~~D~~lIaLA~~l----~----~~lvT~D~~l~~vA~~~Gv~v~~~~~~i~~~  128 (165)
T 2lcq_A           80 NELSKADIEVLALAYEL----K----GEIFSDDYNVQNIASLLGLRFRTLKRGIKKV  128 (165)
T ss_dssp             SCSCHHHHHHHHHHHHH----T----CCEECCCHHHHHHHHHTTCCEECCSCCCSSC
T ss_pred             ccCCHHHHHHHHhHHHh----C----CeEEcCcHHHHHHHHHCCCeEEchhhhcccc
Confidence            13345677777776533    2    3688999999999999999998887555543

>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A

Probab=91.03  E-value=0.29  Score=38.02  Aligned_cols=118  Identities=14%  Similarity=0.137  Sum_probs=66.7

Q ss_pred             EEechHHHhhchh-----hccCC-CCCceeeeHHHHHHHhc---CC-hhHHHHHHHHhcCCCCcEEEEe-CCcccccccc
Q psy4844          71 LLLDTNIILEQID-----ILEEP-TLCNVILVQTILQEVKH---RS-SSVYKRLKDLISNPSRKFYVFV-NEHHYETYVE  139 (254)
Q Consensus        71 lVpDtnvll~~~d-----~le~~-~~~~VII~qTVleev~~---rs-~~~y~RLr~li~~~~~~~~vF~-Ne~~~~T~v~  139 (254)
                      +++||||++..+.     +++.- .-..++++..|+.|+-.   +. ......+..++.    .+-+.. ++.....+..
T Consensus         7 ~llDTnvli~~l~~~~~~~~~~~~~~~~~~is~i~~~El~~~~~~~~~~~~~~~~~~l~----~~~il~~~~~~~~~a~~   82 (149)
T 1v96_A            7 ITFDSLALIKMHSQNMKRILEVTLAKFTVNLSIVTVYRYLTARAYLKKNIEAEFEILKD----IYNIVPLLDDIAIKAAQ   82 (149)
T ss_dssp             EEECHHHHHHHTSGGGHHHHHHHHHHCEEEEEHHHHHHHHHHC--CCSCHHHHHHHHHH----HSEEECCCHHHHHHHHH
T ss_pred             EEeehHHHHHHHccchHHHHHHHhcCCCEEeeHhhHHHHHHHHHhcCcchHHHHHHHHh----cCCeeCCCHHHHHHHHH
Confidence            5679999998876     11110 11347788888888763   21 112344555553    222222 2111111100


Q ss_pred             -----CCCCCCcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcceeeHHHHHHhC
Q psy4844         140 -----QEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEGYISTL  201 (254)
Q Consensus       140 -----r~~~es~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~s~~eYv~~~  201 (254)
                           +..+. ..+-+|..|.++|.-+      +.  .|+|.|...-.+....|+.++|..||++.+
T Consensus        83 l~~~~~~~g~-~~~~~D~lIaA~A~~~------~~--~lvT~D~kdf~~i~~~~i~~i~~~efl~~~  140 (149)
T 1v96_A           83 IEANLIKKEI-TLDMEDIITATTAIYT------NS--LLVTDDPKRYEPIRRFGLDTMPLDKFIKEV  140 (149)
T ss_dssp             HHHHHHHTTC-CCCHHHHHHHHHHHHH------TC--EEEESCHHHHGGGGGGTCCEEEHHHHHHHH
T ss_pred             HHHHHHHCCC-CCCHhHHHHHHHHHHc------CC--EEEECCHHHHhhhhhCCeeecCHHHHHHHH
Confidence                 11121 2456788888887533      23  488999644555666799999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	254
d1o4wa_	125	Hypothetical protein AF0591 {Archaeon Archaeoglobu	97.91

>d1o4wa_ c.120.1.1 (A:) Hypothetical protein AF0591 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PIN domain-like
superfamily: PIN domain-like
family: PIN domain
domain: Hypothetical protein AF0591
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.91  E-value=2.3e-06  Score=65.69  Aligned_cols=99  Identities=17%  Similarity=0.285  Sum_probs=63.3

Q ss_pred             eEEEechHHHh----hchhhccC---CCCCceeeeHHHHHHHhcC---Chh---HHHH-HHHHhcCCCCcEEEEeCCccc
Q psy4844          69 HYLLLDTNIIL----EQIDILEE---PTLCNVILVQTILQEVKHR---SSS---VYKR-LKDLISNPSRKFYVFVNEHHY  134 (254)
Q Consensus        69 ~~lVpDtnvll----~~~d~le~---~~~~~VII~qTVleev~~r---s~~---~y~R-Lr~li~~~~~~~~vF~Ne~~~  134 (254)
                      ..+|+|||+++    +-+|+++.   .....++||..|++|++.-   +..   ...+ ....+..            +.
T Consensus         3 ~~~llDtn~l~~~~~~~id~~~~l~~~~~~~~~ip~~Vi~EL~~L~~~~~~~~~~~~~~~l~~~~~------------~~   70 (125)
T d1o4wa_           3 RCAVVDTNVLMYVYLNKADVVGQLREFGFSRFLITASVKRELEKLEMSLRGKEKVAARFALKLLEH------------FE   70 (125)
T ss_dssp             EEEEECHHHHHHHHHHTCCHHHHHHHTTEEEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTT------------SE
T ss_pred             ceEEEecHHHHHHHHcCCcHHHHHHhhcCceEEecHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh------------CC
Confidence            46789999998    45556543   1234589999999999952   111   1111 2223321            10


Q ss_pred             cccccCCCCCCcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcceeeHH
Q psy4844         135 ETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIE  195 (254)
Q Consensus       135 ~T~v~r~~~es~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~s~~  195 (254)
                       +       .......|..|+..|.-   |     +++++|+|.+++.+|+..|++++++.
T Consensus        71 -~-------~~~~~~~Dd~il~~a~~---~-----~~iv~T~D~~Lr~~~~~~GVpvi~l~  115 (125)
T d1o4wa_          71 -V-------VETESEGDPSLIEAAEK---Y-----GCILITNDKELKRKAKQRGIPVGYLK  115 (125)
T ss_dssp             -E-------ECCSSCSHHHHHHHHHH---H-----TCEEECCCHHHHHHHHHTTCCEECCC
T ss_pred             -C-------CCCCCcHHHHHHHHHhh---C-----CeEEEecCHHHHHHHHHcCCcEEEEe
Confidence             0       01123457888887742   1     26888999999999999999998765