Psyllid ID: psy4847

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390------
Protein Sequence
MCVHPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNFYVGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLMEKSKKSEESMSAGDQFEDEVEKCH
Secondary Structure (PSIPRED)
ccccHHHHHHHHcccccccccccccccHHHHHHHHHcccccccEEccccEEcccEEEEEccccccHHHHHHHHHcccccccccccccccEEEEEEEHHccccccccccccHHHHHHccccccEEcccccHHHHHHHHHHccccEEEEEEEcccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccHHcccHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccEEEEEEcHHHHHHHHHHHHHHHccccccccccccccccHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccHcHEEEHHHHccccccccccHHHHHHHHHHHHHHHccHHHHcccHHHEEEEcccccccHHHHHHHHHccccccEEEccccccHHHEEEHHHHHcccccccccHHHHHHHccccEEEEcccccHHHHHHHHHcccccEEEEEEEEcccccccccHEEEEEEEHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHcccccccccEEEcHHHHHHHHHHcccccccHHHHHHHHcccccEEccccHHHHEccccccEEEEEEEEEEEEEEcccccEEcccccEEccHHHHccccccccccccccccccccccccccccccccccccEccccEEEEEccEEEEEEcHHHHHHHHHHHHHccccccccccccccccccccHHcc
Coil and Loop (DISEMBL)
mcvhpqglrsfirvrdhdvttefndleKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSgysripvyedrrtNIVTMFYIKDlalvdpddntplktlcqfyqnscyfvfedTTLDVLLKQFKEGIKGHMAFVHRVnnegegdpfyeTVGLITLEDVIEELIQAEImdetdvwtdnqhktkrhkqsshrgqdftlfaekseaqrihispqlnlatFQFLSSNFYVGSLLDRItqkgtsqqkptfkslkkrnkpvDYFVLILEGRAevvvgkenlvyeagpfsyfgCQALTqnigiaesptnnssaaqayggslqsvnldsilrytfvpdysvraTTEMFYVKIRRSFYLAAKRATLMEKSKkseesmsagdqFEDEVEKCH
Flexible Loop (DISEMBL)
mcvhpqglrsfirvrdhdvttefndlekdevniisgalelrrKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKsgysripvyedrrTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHktkrhkqsshrgqdFTLFAEKSEAQRIHISPQLNLATFQFLSSNFYVGSLLDRITqkgtsqqkptfkslkkrnkpVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLMekskkseesmsagdqfedevekch
Low Complexity Region (SEG)
MCVHPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNFYVGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLMekskkseesMSAGDQFEDEVEKCH
Disordered region (IsUnstruct)
*******LRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQF*********************PFYETVGLITLEDVIEELIQAEIMDETDVWT*********************F******QRIHISPQLNLATFQFLSSNFYVGSLLDRIT******************KPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIA************YGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR****************************
Disordered Region (DISOPRED)
*CVHPQGLRSFIRV*************KDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEG*G*PFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNFYVGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAE**********EAGPFSYFGCQALTQN*********************************FVPDYSVRATTEMFYVKIRRSFYLAA******************************
Disordered Region (DISEMBL)
MCVHPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWT***************GQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNFYVGSLLDRIT**************KKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATL*************************
Disordered Region (DISPRO)
MCVHPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTD***************QDFTLFAEKSEAQRIHISPQLNLATFQFLSSNFYVGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQN******************************RYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLME***********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCVHPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNFYVGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLMEKSKKSEESMSAGDQFEDEVEKCH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	396	2.2.26 [Sep-21-2011]
Q9H8M5	875	Metal transporter CNNM2 O	yes	N/A	0.909	0.411	0.454	1e-90
Q5U2P1	875	Metal transporter CNNM2 O	yes	N/A	0.909	0.411	0.451	4e-90
Q3TWN3	875	Metal transporter CNNM2 O	yes	N/A	0.909	0.411	0.451	4e-90
Q6P4Q7	775	Metal transporter CNNM4 O	no	N/A	0.886	0.452	0.456	6e-87
Q69ZF7	771	Metal transporter CNNM4 O	no	N/A	0.888	0.456	0.446	4e-85
P0C588	772	Metal transporter CNNM4 O	no	N/A	0.888	0.455	0.441	2e-84
A0JPA0	769	Metal transporter CNNM4 O	yes	N/A	0.906	0.466	0.441	6e-84
Q32NY4	713	Metal transporter CNNM3 O	no	N/A	0.851	0.472	0.440	2e-76
Q9NRU3	951	Metal transporter CNNM1 O	no	N/A	0.909	0.378	0.437	9e-76
Q8NE01	707	Metal transporter CNNM3 O	no	N/A	0.851	0.476	0.443	1e-75

>sp|Q9H8M5|CNNM2_HUMAN Metal transporter CNNM2 OS=Homo sapiens GN=CNNM2 PE=1 SV=2

 Score =  333 bits (855), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 188/414 (45%), Positives = 257/414 (62%), Gaps = 54/414 (13%)

Query: 19  VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
           VT  +NDL K+E+NII GALELR K V DVMT L D +M++ +AILDF T+SEIM+SGY+
Sbjct: 420 VTDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYT 479

Query: 79  RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
           RIPV+E  R+NIV + ++KDLA VDPDD TPLKT+ +FY +  +FVF DT LD +L++FK
Sbjct: 480 RIPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFK 539

Query: 139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRH 198
           +G K H+A V RVNNEGEGDPFYE +G++TLEDVIEE+I++EI+DETD++TDN  +TK+ 
Sbjct: 540 KG-KSHLAIVQRVNNEGEGDPFYEVLGIVTLEDVIEEIIKSEILDETDLYTDN--RTKKK 596

Query: 199 KQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNFYVGS-------LLDRITQKG 251
                R QDF+ F +     ++ ISPQL LA  +FL++     S       +L R+ +  
Sbjct: 597 VAHRERKQDFSAFKQTDSEMKVKISPQLLLAMHRFLATEVEAFSPSQMSEKILLRLLKHP 656

Query: 252 TSQQKPTFKS---------LKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQ 302
              Q+  +           L +RNKPVDYFVLIL+G+ EV  GKE + +EA  FSY+G  
Sbjct: 657 NVIQELKYDEKNKKAPEYYLYQRNKPVDYFVLILQGKVEVEAGKEGMKFEASAFSYYGVM 716

Query: 303 ALTQN----------------IGIAESPTNNSSAAQAYG-----------------GSLQ 329
           ALT +                +  A SP  N S  +  G                  +L 
Sbjct: 717 ALTASPVPLSLSRTFVVSRTELLAAGSPGENKSPPRPCGLNHSDSLSRSDRIDAVTPTLG 776

Query: 330 SVN--LDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLMEKSKKSEES 381
           S N  L+S L   ++PDYSVRA +++ +VKI R  Y  A  A+ M+K+ +S +S
Sbjct: 777 SSNNQLNSSLLQVYIPDYSVRALSDLQFVKISRQQYQNALMASRMDKTPQSSDS 830

Divalent metal cation transporter. Mediates transport of divalent metal cations in an order of Mg(2+) > Co(2+) > Mn(2+) > Sr(2+) > Ba(2+) > Cu(2+) > Fe(2+).
Homo sapiens (taxid: 9606)

>sp|Q5U2P1|CNNM2_RAT Metal transporter CNNM2 OS=Rattus norvegicus GN=Cnnm2 PE=2 SV=1

 Score =  332 bits (850), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 187/414 (45%), Positives = 255/414 (61%), Gaps = 54/414 (13%)

Query: 19  VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
           VT  +NDL K+E+NII GALELR K V DVMT L D +M++ +AILDF T+SEIM+SGY+
Sbjct: 420 VTDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYT 479

Query: 79  RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
           RIPV+E  R+NIV + ++KDLA VDPDD TPLKT+ +FY +  +FVF DT LD +L++FK
Sbjct: 480 RIPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFK 539

Query: 139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRH 198
           +G K H+A V RVNNEGEGDPFYE +G++TLEDVIEE+I++EI+DETD++TDN  +TK+ 
Sbjct: 540 KG-KSHLAIVQRVNNEGEGDPFYEVLGIVTLEDVIEEIIKSEILDETDLYTDN--RTKKK 596

Query: 199 KQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNFYVGS-------LLDRITQKG 251
                R QDF+ F +     ++ ISPQL LA  +FL++     S       +L R+ +  
Sbjct: 597 VAHRERKQDFSAFKQTDSETKVKISPQLLLAMHRFLATEVEAFSPSQMSEKILLRLLKHP 656

Query: 252 TSQQKPTFKS---------LKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQ 302
              Q+  +           L +RNKPVDYFVLIL+G+ EV  GKE + +EA  FSY+G  
Sbjct: 657 NVIQELKYDEKNKKAPECYLYQRNKPVDYFVLILQGKVEVEAGKEGMKFEASAFSYYGVM 716

Query: 303 ALTQN----------------IGIAESPTNNSSAAQAYG-----------------GSLQ 329
           ALT +                +  A SP  N S  +  G                  +L 
Sbjct: 717 ALTASPVPLSLSRTFVVSRTEVLAAGSPGENKSPPRPCGLNHSDSLSRSDRIDAMTPTLG 776

Query: 330 SVN--LDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLMEKSKKSEES 381
           S N  L S     ++PDYSVRA +++ +VKI R  Y  A  A+ M+K+ +S +S
Sbjct: 777 SSNNQLSSSFLQVYIPDYSVRALSDLQFVKISRQQYQNALMASRMDKTPQSSDS 830

Divalent metal cation transporter. Mediates transport of divalent metal cations in an order of Mg(2+) > Co(2+) > Mn(2+) > Sr(2+) > Ba(2+) > Cu(2+) > Fe(2+).

Rattus norvegicus (taxid: 10116)

>sp|Q3TWN3|CNNM2_MOUSE Metal transporter CNNM2 OS=Mus musculus GN=Cnnm2 PE=1 SV=3

 Score =  332 bits (850), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 187/414 (45%), Positives = 255/414 (61%), Gaps = 54/414 (13%)

Query: 19  VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
           VT  +NDL K+E+NII GALELR K V DVMT L D +M++ +AILDF T+SEIM+SGY+
Sbjct: 420 VTDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYT 479

Query: 79  RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
           RIPV+E  R+NIV + ++KDLA VDPDD TPLKT+ +FY +  +FVF DT LD +L++FK
Sbjct: 480 RIPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFK 539

Query: 139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRH 198
           +G K H+A V RVNNEGEGDPFYE +G++TLEDVIEE+I++EI+DETD++TDN  +TK+ 
Sbjct: 540 KG-KSHLAIVQRVNNEGEGDPFYEVLGIVTLEDVIEEIIKSEILDETDLYTDN--RTKKK 596

Query: 199 KQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNFYVGS-------LLDRITQKG 251
                R QDF+ F +     ++ ISPQL LA  +FL++     S       +L R+ +  
Sbjct: 597 VAHRERKQDFSAFKQTDSEMKVKISPQLLLAMHRFLATEVEAFSPSQMSEKILLRLLKHP 656

Query: 252 TSQQKPTFKS---------LKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQ 302
              Q+  +           L +RNKPVDYFVLIL+G+ EV  GKE + +EA  FSY+G  
Sbjct: 657 NVIQELKYDEKNKKAPECYLYQRNKPVDYFVLILQGKVEVEAGKEGMKFEASAFSYYGVM 716

Query: 303 ALTQN----------------IGIAESPTNNSSAAQAYG-----------------GSLQ 329
           ALT +                +  A SP  N S  +  G                  +L 
Sbjct: 717 ALTASPVPLSLSRTFVVSRTEVLAAGSPGENKSPPRPCGLNHSDSLSRSDRIDAMTPTLG 776

Query: 330 SVN--LDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLMEKSKKSEES 381
           S N  L S     ++PDYSVRA +++ +VKI R  Y  A  A+ M+K+ +S +S
Sbjct: 777 SSNNQLSSSFLQVYIPDYSVRALSDLQFVKISRQQYQNALMASRMDKTPQSSDS 830

Divalent metal cation transporter. Mediates transport of divalent metal cations in an order of Mg(2+) > Co(2+) > Mn(2+) > Sr(2+) > Ba(2+) > Cu(2+) > Fe(2+).

Mus musculus (taxid: 10090)

>sp|Q6P4Q7|CNNM4_HUMAN Metal transporter CNNM4 OS=Homo sapiens GN=CNNM4 PE=1 SV=3

 Score =  321 bits (822), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 179/392 (45%), Positives = 247/392 (63%), Gaps = 41/392 (10%)

Query: 19  VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
           VT  +NDL K+E+N+I GALELR K V D+MT+L+D +M+  DAILDF T+SEIM+SGY+
Sbjct: 347 VTEPYNDLVKEELNMIQGALELRTKTVEDIMTQLQDCFMIRSDAILDFNTMSEIMESGYT 406

Query: 79  RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
           RIPV+ED ++NIV + Y+KDLA VDPDD TPLKT+ +FY +  +FVF DT LD +L++FK
Sbjct: 407 RIPVFEDEQSNIVDILYVKDLAFVDPDDCTPLKTITRFYNHPVHFVFHDTKLDAMLEEFK 466

Query: 139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRH 198
           +G K H+A V +VNNEGEGDPFYE +GL+TLEDVIEE+I++EI+DE+D++TDN+    R 
Sbjct: 467 KG-KSHLAIVQKVNNEGEGDPFYEVLGLVTLEDVIEEIIKSEILDESDMYTDNR---SRK 522

Query: 199 KQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFL-------SSNFYVGSLLDRITQKG 251
           + S    +DF+ F +     ++ ISPQL LA  +FL       S +     +L R+ +  
Sbjct: 523 RVSEKNKRDFSAFKDADNELKVKISPQLLLAAHRFLATEVSQFSPSLISEKILLRLLKYP 582

Query: 252 TSQQKPTFKS---------LKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQ 302
              Q+  F           L  RNKP DYF+LIL+G+ EV  GKEN+ +E G FSY+G  
Sbjct: 583 DVIQELKFDEHNKYYARHYLYTRNKPADYFILILQGKVEVEAGKENMKFETGAFSYYGTM 642

Query: 303 ALTQNIGIAESP-----------------TNNSSAAQAYGGSLQSVNLDSILRYTFVPDY 345
           ALT ++    SP                 T+ S+AA   G S Q     S +   ++ D+
Sbjct: 643 ALT-SVPSDRSPAHPTPLSRSASLSYPDRTDVSTAATLAGSSNQ---FGSSVLGQYISDF 698

Query: 346 SVRATTEMFYVKIRRSFYLAAKRATLMEKSKK 377
           SVRA  ++ Y+KI R  Y     A+ ME S +
Sbjct: 699 SVRALVDLQYIKITRQQYQNGLLASRMENSPQ 730

Probable metal transporter. The interaction with the metal ion chaperone COX11 suggests that it may play a role in sensory neuron functions (By similarity). May play a role in biomineralization and retinal function.

Homo sapiens (taxid: 9606)

>sp|Q69ZF7|CNNM4_MOUSE Metal transporter CNNM4 OS=Mus musculus GN=Cnnm4 PE=1 SV=2

 Score =  315 bits (807), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 174/390 (44%), Positives = 243/390 (62%), Gaps = 38/390 (9%)

Query: 19  VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
           VT  +NDL K+E+N+I GALELR K V D+MT+L D +M+  DAILDF T+SEIM+SGY+
Sbjct: 344 VTEPYNDLVKEELNMIQGALELRTKTVEDIMTQLHDCFMIRSDAILDFNTMSEIMESGYT 403

Query: 79  RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
           RIPV+ED ++NIV + Y+KDLA VDPDD TPLKT+ +FY +  +FVF DT LD +L++FK
Sbjct: 404 RIPVFEDEQSNIVDILYVKDLAFVDPDDCTPLKTITRFYNHPVHFVFHDTKLDAMLEEFK 463

Query: 139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRH 198
           +G K H+A V +VNNEGEGDPFYE +GL+TLEDVIEE+I++EI+DE+D++TDN+    R 
Sbjct: 464 KG-KSHLAIVQKVNNEGEGDPFYEVLGLVTLEDVIEEIIKSEILDESDMYTDNR---TRK 519

Query: 199 KQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFL-------SSNFYVGSLLDRITQKG 251
           + S    +DF+ F +     ++ ISPQL LA  +FL       S +     +L R+ +  
Sbjct: 520 RVSVKNKRDFSAFKDTDNELKVKISPQLLLAAHRFLATEVPQFSPSLMSEKILLRLLKYP 579

Query: 252 TSQQKPTFKS---------LKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQ 302
              Q+  F           L  RNKP D FVLIL+G+ EV  GKEN+ +E G FSY+G  
Sbjct: 580 DVIQELRFNEHNRYCVRHYLYTRNKPADCFVLILQGKVEVEAGKENMKFETGAFSYYGTM 639

Query: 303 A---------------LTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSV 347
           A               L+++  ++    N    + +  GS Q     S +   +V D+SV
Sbjct: 640 ALSVAPPDRSPALPTPLSRSASLSYPDRNTDLTSTSLAGSNQ---FGSCILGQYVSDFSV 696

Query: 348 RATTEMFYVKIRRSFYLAAKRATLMEKSKK 377
           RA T++ Y+KI R  Y     A+ M+ S +
Sbjct: 697 RALTDLQYIKITRQQYQNGLMASRMDNSPQ 726

Probable metal transporter. The interaction with the metal ion chaperone COX11 suggests that it may play a role in sensory neuron functions (By similarity). May play a role in biomineralization and retinal function.

Mus musculus (taxid: 10090)

>sp|P0C588|CNNM4_RAT Metal transporter CNNM4 OS=Rattus norvegicus GN=Cnnm4 PE=1 SV=1

 Score =  313 bits (801), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 172/390 (44%), Positives = 241/390 (61%), Gaps = 38/390 (9%)

Query: 19  VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
           VT  +NDL K+E+N+I GALELR K V D+MT+L D +M+  DAILDF T+SEIM+SGY+
Sbjct: 345 VTEPYNDLVKEELNMIQGALELRTKTVEDIMTQLHDCFMIRSDAILDFNTMSEIMESGYT 404

Query: 79  RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
           RIPV+ED ++NIV + Y+KDLA VDPDD TPLKT+ +FY +  +FVF DT LD +L++FK
Sbjct: 405 RIPVFEDEQSNIVDILYVKDLAFVDPDDCTPLKTITRFYNHPVHFVFHDTKLDAMLEEFK 464

Query: 139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRH 198
           +G K H+A V +VNNEGEGDPFYE +GL+TLEDVIEE+I++EI+DE+D +TDN+    R 
Sbjct: 465 KG-KSHLAIVQKVNNEGEGDPFYEVLGLVTLEDVIEEIIKSEILDESDTYTDNR---TRK 520

Query: 199 KQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFL-------SSNFYVGSLLDRITQKG 251
           + S    +DF+ F +     ++ ISPQL LA  +FL       S +     +L R+ +  
Sbjct: 521 RVSMKNKRDFSAFKDADNELKVKISPQLLLAAHRFLATEVPQFSPSLMSEKILLRLLKYP 580

Query: 252 TSQQKPTFKSLKK---------RNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQ 302
              Q+  F    K         RNKP D F+LIL+G+ EV  GKEN+ +E G FSY+G  
Sbjct: 581 DVIQELRFDEHNKHCTRHYLYTRNKPADCFILILQGKVEVEAGKENMKFETGAFSYYGTM 640

Query: 303 A---------------LTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSV 347
           A               L+++  ++    N      +  GS Q     S +   +V D+SV
Sbjct: 641 ALSLAPPDRSPAHPTPLSRSASLSYPDRNTDMTPSSLAGSNQ---FGSCILGQYVSDFSV 697

Query: 348 RATTEMFYVKIRRSFYLAAKRATLMEKSKK 377
           RA T++ Y+K+ R  Y     A+ M+ S +
Sbjct: 698 RALTDLQYIKVTRQQYQNGLLASRMDNSPQ 727

Probable metal transporter. The interaction with the metal ion chaperone COX11 suggests that it may play a role in sensory neuron functions. May play a role in biomineralization and retinal function.

Rattus norvegicus (taxid: 10116)

>sp|A0JPA0|CNNM4_XENTR Metal transporter CNNM4 OS=Xenopus tropicalis GN=cnnm4 PE=2 SV=1

 Score =  311 bits (797), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 172/390 (44%), Positives = 251/390 (64%), Gaps = 31/390 (7%)

Query: 19  VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
           VT  ++ + ++E+NII GALELR K V DVMTK+ED +ML  DA+LDF T+S IM+SGY+
Sbjct: 344 VTEPYSGIVREEMNIIQGALELRTKTVEDVMTKVEDCFMLPSDAVLDFNTMSSIMESGYT 403

Query: 79  RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
           RIPVYE+ R+NIV + Y+KDLA VDPDD TPL T+ +FY +  +FVF DT LD +L++FK
Sbjct: 404 RIPVYENERSNIVDILYVKDLAFVDPDDCTPLSTITRFYSHPLHFVFSDTKLDAVLEEFK 463

Query: 139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRH 198
           +G K H+A V +VN+EGEGDPFYE +GL+TLEDVIEE+I++EI+DE+D++TDN+ K KR 
Sbjct: 464 KG-KSHLAIVQKVNSEGEGDPFYEVMGLVTLEDVIEEIIKSEILDESDLYTDNRSK-KRV 521

Query: 199 KQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNFYV--------GSLLDRITQK 250
           K+   R +DF++F +     R+ ISPQL LA  +FLS+   +         +LL  +   
Sbjct: 522 KRRQDR-KDFSVFKDADNELRVKISPQLLLAAHRFLSTEVPLFAPALVSEKTLLRLLKYP 580

Query: 251 GTSQQ--------KPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQ 302
              Q+        K +   L +R+K  DYF+LIL+G+ EV  GKEN+ +E+G FSY+G  
Sbjct: 581 DVVQELHFNEDDKKASENFLYQRSKIADYFILILQGKVEVEAGKENMKFESGAFSYYGVM 640

Query: 303 AL-TQNIGIAESPTNNSSA-----------AQAYGGSLQSVNLDSILRYTFVPDYSVRAT 350
           A+ T +     SP++ SS            + +   ++   N     +  ++ D+SVRA 
Sbjct: 641 AINTPSAAELRSPSHMSSLNRSISLSCHERSDSISSTISGSNTQLSAQAQYMADFSVRAL 700

Query: 351 TEMFYVKIRRSFYLAAKRATLMEKSKKSEE 380
            ++ +VKI R  Y  A  ++ ++ S +S E
Sbjct: 701 GDLQFVKITREQYQGALMSSRLDSSPQSPE 730

Probable metal transporter.

Xenopus tropicalis (taxid: 8364)

>sp|Q32NY4|CNNM3_MOUSE Metal transporter CNNM3 OS=Mus musculus GN=Cnnm3 PE=1 SV=2

 Score =  286 bits (731), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 159/361 (44%), Positives = 227/361 (62%), Gaps = 24/361 (6%)

Query: 40  LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL 99
           LR + V DV+T LED +ML    +LDF  ++ IM+SG++RIPVYE+ R+NIV M Y+KDL
Sbjct: 315 LRSRTVEDVLTPLEDCFMLDSGTVLDFSVLASIMQSGHTRIPVYEEERSNIVDMLYLKDL 374

Query: 100 ALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDP 159
           A+V+P+D TPL T+ +FY +  +FVF DT LD +L++FK G K H+A V +VNNEGEGDP
Sbjct: 375 AIVEPEDCTPLSTITRFYNHPLHFVFNDTKLDAVLEEFKRG-KSHLAIVQKVNNEGEGDP 433

Query: 160 FYETVGLITLEDVIEELIQAEIMDETDVWTDNQ--HKTKRHKQSSHRGQDFTLFAEKSEA 217
           FYE +GL+TLEDVIEE+I++EI+DE++ ++D +   KT        R ++F+LF    + 
Sbjct: 434 FYEVLGLVTLEDVIEEIIKSEILDESEDYSDTKVRKKTVALGAPLKRKEEFSLFKVSDDE 493

Query: 218 QRIHISPQLNLATFQFLSSNFYVGSLLDRITQK--------GTSQQKPTFKS-------- 261
            ++ ISPQL LAT +FLS    V S L R+++K         +  Q+ TF          
Sbjct: 494 YKVKISPQLLLATQRFLSREVDVFSPL-RVSEKVLLHLLKHPSVNQEVTFDESNRLAAHH 552

Query: 262 -LKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSA 320
            L +R++PVDYF+LIL+GR EV +GKE L +E G F+Y+G  ALT      +SP    S+
Sbjct: 553 YLYQRSQPVDYFILILQGRVEVEIGKEGLKFENGAFTYYGVSALTAPSSAHQSPV---SS 609

Query: 321 AQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLMEKSKKSEE 380
            Q     +Q    D     T+ PDY+VRA +++  +K+ R  YL A  AT  +    S E
Sbjct: 610 RQLIRHDVQPEPADGTRSCTYCPDYTVRALSDLQLIKVTRLQYLNALLATRAQSLPPSPE 669

Query: 381 S 381
           +
Sbjct: 670 N 670

Probable metal transporter.

Mus musculus (taxid: 10090)

>sp|Q9NRU3|CNNM1_HUMAN Metal transporter CNNM1 OS=Homo sapiens GN=CNNM1 PE=2 SV=3

 Score =  284 bits (726), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 179/409 (43%), Positives = 255/409 (62%), Gaps = 49/409 (11%)

Query: 23  FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPV 82
           ++DL K+E+NII GALELR K+V +V+T L D +ML  DA+LDF TVSEI++SGY+RIPV
Sbjct: 407 YSDLVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSGYTRIPV 466

Query: 83  YE-DRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGI 141
           YE D+R NIV + ++KDLA VDPDD TPL T+ +FY    + VF DT LD +L++FK+G 
Sbjct: 467 YEGDQRHNIVDILFVKDLAFVDPDDCTPLLTVTRFYNRPLHCVFNDTRLDTVLEEFKKG- 525

Query: 142 KGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQS 201
           K H+A V RVNNEGEGDPFYE +G++TLED+IEE+I++EI+DETD++TDN+ K +R  Q 
Sbjct: 526 KSHLAIVQRVNNEGEGDPFYEVMGIVTLEDIIEEIIKSEILDETDLYTDNRKK-QRVPQR 584

Query: 202 SHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSS------NFYVG-SLLDRITQKGTSQ 254
             +  DF+LF       R+ ISPQL LAT +F+++      + Y+   +L R+ +     
Sbjct: 585 ERKRHDFSLFKLSDTEMRVKISPQLLLATHRFMATEVEPFKSLYLSEKILLRLLKHPNVI 644

Query: 255 QKPTFKS---------LKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQAL- 304
           Q+  F           L +RN+PVDYFVL+L+G+ EV VGKE L +E G F+Y+G  A+ 
Sbjct: 645 QELKFDEKNKKAPEHYLYQRNRPVDYFVLLLQGKVEVEVGKEGLRFENGAFTYYGVPAIM 704

Query: 305 --------TQNIG--------IAESPTNNSSAAQA---------YGGSLQSVNLDSILRY 339
                    + +G        +  SP+  S   ++         +GGS  +  L S    
Sbjct: 705 TTACSDNDVRKVGSLAGSSVFLNRSPSRCSGLNRSESPNRERSDFGGS--NTQLYSSSNN 762

Query: 340 TFVPDYSVRATTEMFYVKIRRSFYLAAKRATLMEKSKKSE--ESMSAGD 386
            ++PDYSV   +++ +VKI R  Y  A  A  M+ S +S   E+ + GD
Sbjct: 763 LYMPDYSVHILSDVQFVKITRQQYQNALTACHMDSSPQSPDMEAFTDGD 811

Probable metal transporter.

Homo sapiens (taxid: 9606)

>sp|Q8NE01|CNNM3_HUMAN Metal transporter CNNM3 OS=Homo sapiens GN=CNNM3 PE=1 SV=1

 Score =  283 bits (725), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 160/361 (44%), Positives = 224/361 (62%), Gaps = 24/361 (6%)

Query: 40  LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL 99
           LR + V DV+T LED +ML    +LDF  ++ IM+SG++RIPVYE+ R+NIV M Y+KDL
Sbjct: 309 LRCRTVEDVLTPLEDCFMLDASTVLDFGVLASIMQSGHTRIPVYEEERSNIVDMLYLKDL 368

Query: 100 ALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDP 159
           A VDP+D TPL T+ +FY +  +FVF DT LD +L++FK G K H+A V +VNNEGEGDP
Sbjct: 369 AFVDPEDCTPLSTITRFYNHPLHFVFNDTKLDAVLEEFKRG-KSHLAIVQKVNNEGEGDP 427

Query: 160 FYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQSS--HRGQDFTLFAEKSEA 217
           FYE +GL+TLEDVIEE+I++EI+DE++ + D   K K     +   R ++F+LF    + 
Sbjct: 428 FYEVLGLVTLEDVIEEIIRSEILDESEDYRDTVVKRKPASLMAPLKRKEEFSLFKVSDDE 487

Query: 218 QRIHISPQLNLATFQFLSSNFYVGSLLDRITQK-----------------GTSQQKPTFK 260
            ++ ISPQL LAT +FLS    V S L RI++K                   S +  T  
Sbjct: 488 YKVTISPQLLLATQRFLSREVDVFSPL-RISEKVLLHLLKHPSVNQEVRFDESNRLATHH 546

Query: 261 SLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSA 320
            L +R++PVDYF+LIL+GR EV +GKE L +E G F+Y+G  ALT    + +SP    S+
Sbjct: 547 YLYQRSQPVDYFILILQGRVEVEIGKEGLKFENGAFTYYGVSALTVPSSVHQSPV---SS 603

Query: 321 AQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLMEKSKKSEE 380
            Q     LQ    D      + PDY+VRA +++  +K+ R  YL A  AT  +   +S E
Sbjct: 604 LQPIRHDLQPDPGDGTHSSAYCPDYTVRALSDLQLIKVTRLQYLNALLATRAQNLPQSPE 663

Query: 381 S 381
           +
Sbjct: 664 N 664

Probable metal transporter.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	396
328720335	986	PREDICTED: metal transporter CNNM2-like	0.929	0.373	0.706	1e-153
328720337	950	PREDICTED: metal transporter CNNM2-like	0.929	0.387	0.706	1e-153
328720333	931	PREDICTED: metal transporter CNNM2-like	0.929	0.395	0.706	1e-153
328783660	945	PREDICTED: metal transporter CNNM2-like	0.931	0.390	0.676	1e-149
380016390	985	PREDICTED: LOW QUALITY PROTEIN: metal tr	0.931	0.374	0.676	1e-149
350403868	950	PREDICTED: metal transporter CNNM2-like	0.931	0.388	0.677	1e-147
383860842	944	PREDICTED: metal transporter CNNM2-like	0.934	0.391	0.674	1e-147
332022207	999	Metal transporter CNNM2 [Acromyrmex echi	0.934	0.370	0.676	1e-146
307177469	1003	Metal transporter CNNM2 [Camponotus flor	0.931	0.367	0.672	1e-146
307209414	1012	Metal transporter CNNM2 [Harpegnathos sa	0.934	0.365	0.659	1e-144

>gi|328720335|ref|XP_001945496.2| PREDICTED: metal transporter CNNM2-like isoform 1 [Acyrthosiphon pisum]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 279/395 (70%), Positives = 319/395 (80%), Gaps = 27/395 (6%)

Query: 22  EFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIP 81
           E+NDLEKDEVNIISGALEL RK VGDVMTKLEDVYMLSYD ILDFETVSEIMKSGYSRIP
Sbjct: 507 EYNDLEKDEVNIISGALELHRKKVGDVMTKLEDVYMLSYDTILDFETVSEIMKSGYSRIP 566

Query: 82  VYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGI 141
           VYE  R NIVTM YIKDLALVDPDDNT LKTLCQFYQN CYFVFEDTTLDVL KQFKEGI
Sbjct: 567 VYEGNRQNIVTMLYIKDLALVDPDDNTLLKTLCQFYQNPCYFVFEDTTLDVLFKQFKEGI 626

Query: 142 KGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQS 201
           KGHMAFVHRVNNEGEGDPFYETVG+ITLEDVIEELIQAEIMDETDV+TDN+ K +R +Q 
Sbjct: 627 KGHMAFVHRVNNEGEGDPFYETVGIITLEDVIEELIQAEIMDETDVYTDNRSK-QRRQQR 685

Query: 202 SHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSS-------NFYVGSLLDRITQKGT-- 252
           S R QDFT FAE+S+ QRIHISPQL LATFQFLSS       +    ++L R+ ++    
Sbjct: 686 SLRTQDFTAFAERSDNQRIHISPQLTLATFQFLSSSVEAFKTDVVSETILMRLLKQDVIF 745

Query: 253 ---SQQKPTFKS-----LKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQAL 304
               + K  FKS     + ++ KPVDYFVLILEGR EV VG+ENLV+E+GPF+YFG QAL
Sbjct: 746 HIKMKDKERFKSDPASIIYQQGKPVDYFVLILEGRVEVTVGRENLVFESGPFTYFGSQAL 805

Query: 305 TQNIGIAESPTNNSSAAQAYG-----GSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIR 359
            QNIGI ESP + ++   A       GS+QSVN+D++LRYTFVPDYSVRA TE+ Y++++
Sbjct: 806 HQNIGIGESPPSGANPTMANSTVNNMGSIQSVNIDAMLRYTFVPDYSVRAVTEVMYLRVK 865

Query: 360 RSFYLAAKRATLMEKSKKSEESMSAGDQFEDEVEK 394
           RSFY+AAKRATLME+SKK    MS   +F++EV+K
Sbjct: 866 RSFYMAAKRATLMERSKK----MSNAGEFDEEVDK 896

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720337|ref|XP_003247005.1| PREDICTED: metal transporter CNNM2-like isoform 3 [Acyrthosiphon pisum]

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 279/395 (70%), Positives = 319/395 (80%), Gaps = 27/395 (6%)

Query: 22  EFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIP 81
           E+NDLEKDEVNIISGALEL RK VGDVMTKLEDVYMLSYD ILDFETVSEIMKSGYSRIP
Sbjct: 507 EYNDLEKDEVNIISGALELHRKKVGDVMTKLEDVYMLSYDTILDFETVSEIMKSGYSRIP 566

Query: 82  VYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGI 141
           VYE  R NIVTM YIKDLALVDPDDNT LKTLCQFYQN CYFVFEDTTLDVL KQFKEGI
Sbjct: 567 VYEGNRQNIVTMLYIKDLALVDPDDNTLLKTLCQFYQNPCYFVFEDTTLDVLFKQFKEGI 626

Query: 142 KGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQS 201
           KGHMAFVHRVNNEGEGDPFYETVG+ITLEDVIEELIQAEIMDETDV+TDN+ K +R +Q 
Sbjct: 627 KGHMAFVHRVNNEGEGDPFYETVGIITLEDVIEELIQAEIMDETDVYTDNRSK-QRRQQR 685

Query: 202 SHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSS-------NFYVGSLLDRITQKGT-- 252
           S R QDFT FAE+S+ QRIHISPQL LATFQFLSS       +    ++L R+ ++    
Sbjct: 686 SLRTQDFTAFAERSDNQRIHISPQLTLATFQFLSSSVEAFKTDVVSETILMRLLKQDVIF 745

Query: 253 ---SQQKPTFKS-----LKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQAL 304
               + K  FKS     + ++ KPVDYFVLILEGR EV VG+ENLV+E+GPF+YFG QAL
Sbjct: 746 HIKMKDKERFKSDPASIIYQQGKPVDYFVLILEGRVEVTVGRENLVFESGPFTYFGSQAL 805

Query: 305 TQNIGIAESPTNNSSAAQAYG-----GSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIR 359
            QNIGI ESP + ++   A       GS+QSVN+D++LRYTFVPDYSVRA TE+ Y++++
Sbjct: 806 HQNIGIGESPPSGANPTMANSTVNNMGSIQSVNIDAMLRYTFVPDYSVRAVTEVMYLRVK 865

Query: 360 RSFYLAAKRATLMEKSKKSEESMSAGDQFEDEVEK 394
           RSFY+AAKRATLME+SKK    MS   +F++EV+K
Sbjct: 866 RSFYMAAKRATLMERSKK----MSNAGEFDEEVDK 896

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720333|ref|XP_003247004.1| PREDICTED: metal transporter CNNM2-like isoform 2 [Acyrthosiphon pisum]

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 279/395 (70%), Positives = 319/395 (80%), Gaps = 27/395 (6%)

Query: 22  EFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIP 81
           E+NDLEKDEVNIISGALEL RK VGDVMTKLEDVYMLSYD ILDFETVSEIMKSGYSRIP
Sbjct: 507 EYNDLEKDEVNIISGALELHRKKVGDVMTKLEDVYMLSYDTILDFETVSEIMKSGYSRIP 566

Query: 82  VYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGI 141
           VYE  R NIVTM YIKDLALVDPDDNT LKTLCQFYQN CYFVFEDTTLDVL KQFKEGI
Sbjct: 567 VYEGNRQNIVTMLYIKDLALVDPDDNTLLKTLCQFYQNPCYFVFEDTTLDVLFKQFKEGI 626

Query: 142 KGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQS 201
           KGHMAFVHRVNNEGEGDPFYETVG+ITLEDVIEELIQAEIMDETDV+TDN+ K +R +Q 
Sbjct: 627 KGHMAFVHRVNNEGEGDPFYETVGIITLEDVIEELIQAEIMDETDVYTDNRSK-QRRQQR 685

Query: 202 SHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSS-------NFYVGSLLDRITQKGT-- 252
           S R QDFT FAE+S+ QRIHISPQL LATFQFLSS       +    ++L R+ ++    
Sbjct: 686 SLRTQDFTAFAERSDNQRIHISPQLTLATFQFLSSSVEAFKTDVVSETILMRLLKQDVIF 745

Query: 253 ---SQQKPTFKS-----LKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQAL 304
               + K  FKS     + ++ KPVDYFVLILEGR EV VG+ENLV+E+GPF+YFG QAL
Sbjct: 746 HIKMKDKERFKSDPASIIYQQGKPVDYFVLILEGRVEVTVGRENLVFESGPFTYFGSQAL 805

Query: 305 TQNIGIAESPTNNSSAAQAYG-----GSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIR 359
            QNIGI ESP + ++   A       GS+QSVN+D++LRYTFVPDYSVRA TE+ Y++++
Sbjct: 806 HQNIGIGESPPSGANPTMANSTVNNMGSIQSVNIDAMLRYTFVPDYSVRAVTEVMYLRVK 865

Query: 360 RSFYLAAKRATLMEKSKKSEESMSAGDQFEDEVEK 394
           RSFY+AAKRATLME+SKK    MS   +F++EV+K
Sbjct: 866 RSFYMAAKRATLMERSKK----MSNAGEFDEEVDK 896

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783660|ref|XP_625178.3| PREDICTED: metal transporter CNNM2-like [Apis mellifera]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 266/393 (67%), Positives = 312/393 (79%), Gaps = 24/393 (6%)

Query: 19  VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
           VTT +NDLEKDEVNII+GALELR+K V DVMTK+EDVYML Y+AILDFETVSEIMKSG+S
Sbjct: 430 VTTGYNDLEKDEVNIIAGALELRKKTVADVMTKIEDVYMLDYNAILDFETVSEIMKSGFS 489

Query: 79  RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
           RIPVYE+ RTNIVTM YIKDLA VDPDDN PLKTLCQFYQN C F+FED TLD++ KQFK
Sbjct: 490 RIPVYENARTNIVTMLYIKDLAFVDPDDNMPLKTLCQFYQNPCNFIFEDVTLDIMFKQFK 549

Query: 139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRH 198
           EG KGHMAFV RVNNEGEGDPFYE +GL+TLEDVIEELIQAEIMDETDV+TDN  K+KR 
Sbjct: 550 EGHKGHMAFVQRVNNEGEGDPFYEVIGLVTLEDVIEELIQAEIMDETDVFTDN--KSKRR 607

Query: 199 KQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNF-------YVGSLLDRITQKG 251
           +Q+ H+ QDFT+FAEK E QRIHISPQL LA FQ+LS+            ++L R+ ++ 
Sbjct: 608 RQARHKIQDFTVFAEKKENQRIHISPQLTLAMFQYLSTTVDAFKPDTISETILRRLLKQD 667

Query: 252 TSQQKPTFKSLKKRNKP----------VDYFVLILEGRAEVVVGKENLVYEAGPFSYFGC 301
                      K RN P          VDYFVLILEGR EV VGKEN+++E+GPF+YFG 
Sbjct: 668 IIYHIKVKSREKARNDPAAVIYQQGKAVDYFVLILEGRVEVTVGKENMMFESGPFTYFGS 727

Query: 302 QALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRS 361
           QALT NIGIAESPTN +       GS+QS+NLDS+LRYTF+PDY+VRA +E+FYVKI+RS
Sbjct: 728 QALTVNIGIAESPTNTNPQTV---GSIQSINLDSMLRYTFIPDYTVRAVSEVFYVKIKRS 784

Query: 362 FYLAAKRATLMEKSKKSEESMSAGDQFEDEVEK 394
            YLAAKRATL+E+S+K  +S+   +QF+DEVEK
Sbjct: 785 LYLAAKRATLLERSQK--DSLPGQEQFDDEVEK 815

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016390|ref|XP_003692168.1| PREDICTED: LOW QUALITY PROTEIN: metal transporter CNNM2-like [Apis florea]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 266/393 (67%), Positives = 312/393 (79%), Gaps = 24/393 (6%)

Query: 19  VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
           VTT +NDLEKDEVNII+GALELR+K V DVMTK+EDVYML Y+AILDFETVSEIMKSG+S
Sbjct: 470 VTTGYNDLEKDEVNIIAGALELRKKTVADVMTKIEDVYMLDYNAILDFETVSEIMKSGFS 529

Query: 79  RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
           RIPVYE+ RTNIVTM YIKDLA VDPDDN PLKTLCQFYQN C F+FED TLD++ KQFK
Sbjct: 530 RIPVYENARTNIVTMLYIKDLAFVDPDDNMPLKTLCQFYQNPCNFIFEDVTLDIMFKQFK 589

Query: 139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRH 198
           EG KGHMAFV RVNNEGEGDPFYE +GL+TLEDVIEELIQAEIMDETDV+TDN  K+KR 
Sbjct: 590 EGHKGHMAFVQRVNNEGEGDPFYEVIGLVTLEDVIEELIQAEIMDETDVFTDN--KSKRR 647

Query: 199 KQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNF-------YVGSLLDRITQKG 251
           +Q+ H+ QDFT+FAEK E QRIHISPQL LA FQ+LS+            ++L R+ ++ 
Sbjct: 648 RQARHKIQDFTVFAEKKENQRIHISPQLTLAMFQYLSTTVDAFKPDTISETILRRLLKQD 707

Query: 252 TSQQKPTFKSLKKRNKP----------VDYFVLILEGRAEVVVGKENLVYEAGPFSYFGC 301
                      K RN P          VDYFVLILEGR EV VGKEN+++E+GPF+YFG 
Sbjct: 708 IIYHIKVKSREKARNDPVAVIYQQGKAVDYFVLILEGRVEVTVGKENMMFESGPFTYFGS 767

Query: 302 QALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRS 361
           QALT NIGIAESPTN +       GS+QS+NLDS+LRYTF+PDY+VRA +E+FYVKI+RS
Sbjct: 768 QALTVNIGIAESPTNTNPQTV---GSIQSINLDSMLRYTFIPDYTVRAVSEVFYVKIKRS 824

Query: 362 FYLAAKRATLMEKSKKSEESMSAGDQFEDEVEK 394
            YLAAKRATL+E+S+K  +S+   +QF+DEVEK
Sbjct: 825 LYLAAKRATLLERSQK--DSLPGQEQFDDEVEK 855

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403868|ref|XP_003486930.1| PREDICTED: metal transporter CNNM2-like [Bombus impatiens]

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 267/394 (67%), Positives = 311/394 (78%), Gaps = 25/394 (6%)

Query: 19  VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
           VTT +NDLEKDEVNII+GALELR+K V DVMTK+EDVYML Y+AILDFETVSEIMKSG+S
Sbjct: 432 VTTGYNDLEKDEVNIIAGALELRKKTVKDVMTKIEDVYMLDYNAILDFETVSEIMKSGFS 491

Query: 79  RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
           RIPVYE  RTNIVTM YIKDLA VDPDDN PLKTLCQFYQN C F+FED TLD++ KQFK
Sbjct: 492 RIPVYEGARTNIVTMLYIKDLAFVDPDDNMPLKTLCQFYQNPCNFIFEDVTLDIMFKQFK 551

Query: 139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRH 198
           EG KGHMAFV RVNNEGEGDPFYE +GL+TLEDVIEELIQAEIMDETDV+TDN  K+KR 
Sbjct: 552 EGHKGHMAFVQRVNNEGEGDPFYEVIGLVTLEDVIEELIQAEIMDETDVFTDN--KSKRR 609

Query: 199 KQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNF-------YVGSLLDRITQKG 251
           +Q+ H+ QDFT+FAEK E QRIHISPQL LA FQ+LS+            ++L R+ ++ 
Sbjct: 610 RQARHKIQDFTVFAEKKENQRIHISPQLTLAMFQYLSTTVDAFKPDTISETILRRLLKQD 669

Query: 252 TSQQKPTFKSLKKRNKP----------VDYFVLILEGRAEVVVGKENLVYEAGPFSYFGC 301
                      K RN P          VDYFVLILEGR EV VGKEN+++E+GPF+YFG 
Sbjct: 670 IIYHIKVKSREKARNDPVAVIYQQGKAVDYFVLILEGRVEVTVGKENMMFESGPFTYFGS 729

Query: 302 QALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRS 361
           QALT N+GIAESPTN +       GS+QS+NLDS+LRYTFVPDY+VRA TE+FYVKI+RS
Sbjct: 730 QALTVNVGIAESPTNTNPQTV---GSIQSINLDSMLRYTFVPDYTVRAVTEVFYVKIKRS 786

Query: 362 FYLAAKRATLMEKSKKSEESMSAGD-QFEDEVEK 394
            YLAAKRATL+E+S+K  +S+   + QF+DEVEK
Sbjct: 787 LYLAAKRATLLERSQK--DSLPGQEQQFDDEVEK 818

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860842|ref|XP_003705897.1| PREDICTED: metal transporter CNNM2-like [Megachile rotundata]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 265/393 (67%), Positives = 310/393 (78%), Gaps = 23/393 (5%)

Query: 19  VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
           VTT +NDLEKDEVNII+GALELR+K V DVMTK+EDVYML+YDAILDFETVSEIMKSG+S
Sbjct: 430 VTTGYNDLEKDEVNIIAGALELRKKTVKDVMTKIEDVYMLNYDAILDFETVSEIMKSGFS 489

Query: 79  RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
           RIPVYE  RTNIVTM YIKDLA VDPDDN PLKTLCQFYQN C F+FED TLD++ KQFK
Sbjct: 490 RIPVYEGTRTNIVTMLYIKDLAFVDPDDNMPLKTLCQFYQNPCNFIFEDVTLDIMFKQFK 549

Query: 139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRH 198
           EG KGHMAFV RVNNEGEGDPFYE +GL+TLEDVIEELIQAEIMDETDV+TDN  +TKR 
Sbjct: 550 EGHKGHMAFVQRVNNEGEGDPFYEVIGLVTLEDVIEELIQAEIMDETDVFTDN--RTKRR 607

Query: 199 KQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNF-------YVGSLLDRITQKG 251
           +Q+ H+ QDFT+FAEK E QRIHISPQL LA FQ+LS+            ++L R+ ++ 
Sbjct: 608 RQARHKIQDFTVFAEKKENQRIHISPQLTLAMFQYLSTTVDAFKPDTISETILRRLLKQD 667

Query: 252 TSQQKPTFKSLKKRNKP----------VDYFVLILEGRAEVVVGKENLVYEAGPFSYFGC 301
                      K RN P          VDYFVLILEGR EV VGKEN+++E+GPF+YFG 
Sbjct: 668 IIYHIKVKSREKARNDPTAVIYQQGKAVDYFVLILEGRVEVTVGKENMMFESGPFTYFGS 727

Query: 302 QALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRS 361
           QALT N+GIAESPT  +       GS+QS+NLDS+LRYTFVPDY+VRA TE+FYVKI+RS
Sbjct: 728 QALTVNVGIAESPTATNPQTV---GSIQSINLDSMLRYTFVPDYTVRAVTEVFYVKIKRS 784

Query: 362 FYLAAKRATLMEKSKKSEESMSAGDQFEDEVEK 394
            YLAAKRATL+E+S+K +    + +QF+DE+EK
Sbjct: 785 LYLAAKRATLLERSQK-DPIPGSQEQFDDEIEK 816

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022207|gb|EGI62522.1| Metal transporter CNNM2 [Acromyrmex echinatior]

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 266/393 (67%), Positives = 315/393 (80%), Gaps = 23/393 (5%)

Query: 19  VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
           VTTE+NDLEKDEVNII+GALELR+K V DVMT++EDVYML+Y+AILDFETVSEIMKSG+S
Sbjct: 486 VTTEYNDLEKDEVNIIAGALELRKKTVVDVMTRIEDVYMLNYNAILDFETVSEIMKSGFS 545

Query: 79  RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
           RIPVYED RTNIVTM YIKDLA VDPDDNTPLKTLCQFYQN C F+FED TLD++ KQFK
Sbjct: 546 RIPVYEDVRTNIVTMLYIKDLAFVDPDDNTPLKTLCQFYQNPCNFIFEDVTLDIMFKQFK 605

Query: 139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRH 198
           EG KGHMAFV RVNNEGEGDPFYE +GLITLEDVIEELIQAEI+DETDV+TDN+ K KR 
Sbjct: 606 EGHKGHMAFVQRVNNEGEGDPFYEVIGLITLEDVIEELIQAEIIDETDVFTDNRSKRKRQ 665

Query: 199 KQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLS-------SNFYVGSLLDRITQ-- 249
            +S     DFT+FAEK E QRIHISPQL LA FQ+LS       S+    ++L R+ +  
Sbjct: 666 VRSKM-PTDFTIFAEKKENQRIHISPQLTLAMFQYLSTTVDTFKSDVISETILRRLLKQD 724

Query: 250 -----KGTSQQKPTFKS---LKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGC 301
                K  S++K        + ++ K VDYFVLILEGR EV VGKEN+++E+GPF+YFG 
Sbjct: 725 IIYHVKVKSREKAKTDPAAIIYQQGKAVDYFVLILEGRVEVTVGKENMMFESGPFTYFGS 784

Query: 302 QALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRS 361
           QALT NIGIAESPTN   A     GS+QSVNLDS+LR+TF+PDY+VRA TE+FYVK++RS
Sbjct: 785 QALTANIGIAESPTN---ANPQTVGSIQSVNLDSMLRHTFIPDYTVRAVTEVFYVKVKRS 841

Query: 362 FYLAAKRATLMEKSKKSEESMSAGDQFEDEVEK 394
            YLAAKRATL+E+ +K  + + + +QF+DEVEK
Sbjct: 842 LYLAAKRATLLERRQK--DPLPSQEQFDDEVEK 872

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177469|gb|EFN66596.1| Metal transporter CNNM2 [Camponotus floridanus]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 265/394 (67%), Positives = 313/394 (79%), Gaps = 25/394 (6%)

Query: 19  VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
           VT E+NDLEKDEVNII+GALELR+K V DVMT++EDVYML+Y+AILDFETVSEIMKSG+S
Sbjct: 486 VTNEYNDLEKDEVNIIAGALELRKKTVADVMTRIEDVYMLNYNAILDFETVSEIMKSGFS 545

Query: 79  RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
           RIPVYED RTNIVTM YIKDLA VDPDDN PLKTLCQFYQN C F+FED TLD++ KQFK
Sbjct: 546 RIPVYEDVRTNIVTMLYIKDLAFVDPDDNMPLKTLCQFYQNPCNFIFEDVTLDIMFKQFK 605

Query: 139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRH 198
           EG KGHMAFV RVNNEGEGDPFYE +GL+TLEDVIEELIQAEI+DETDV+TDN++K KR 
Sbjct: 606 EGHKGHMAFVQRVNNEGEGDPFYEVIGLVTLEDVIEELIQAEIIDETDVFTDNRNKRKRQ 665

Query: 199 KQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLS-------SNFYVGSLLDRITQ-- 249
            +      DFT+FAEK E QRIHISPQL LA FQ+LS       S+     +L R+ +  
Sbjct: 666 VRPKM-PTDFTIFAEKKENQRIHISPQLTLAMFQYLSTTVDTFKSDIISEPILRRLLKQD 724

Query: 250 -----KGTSQQK----PTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFG 300
                K  S++K    PT   + ++ K VDYFVLILEGR EV VGKEN+++E+GPF+YFG
Sbjct: 725 IIYHIKVKSREKAKSDPT-AIIYQQGKAVDYFVLILEGRVEVTVGKENMMFESGPFTYFG 783

Query: 301 CQALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRR 360
            QALT NIGIAESPTN   A     GS+QSVNLDS+LR+TF+PDY+VRA TE+FYVK++R
Sbjct: 784 SQALTANIGIAESPTN---ANPQTVGSIQSVNLDSMLRHTFIPDYTVRAVTEVFYVKVKR 840

Query: 361 SFYLAAKRATLMEKSKKSEESMSAGDQFEDEVEK 394
           S YLAAKRATL+EK +K  + +   +QF+DEVEK
Sbjct: 841 SLYLAAKRATLLEKRQK--DPLPTQEQFDDEVEK 872

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209414|gb|EFN86431.1| Metal transporter CNNM2 [Harpegnathos saltator]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 259/393 (65%), Positives = 313/393 (79%), Gaps = 23/393 (5%)

Query: 19  VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
           VTTE+NDLEKDEVNII+GALELR+K V DVMT++EDVYML+Y+A+LDFETVSEIMKSG+S
Sbjct: 501 VTTEYNDLEKDEVNIIAGALELRKKTVADVMTRIEDVYMLNYNAVLDFETVSEIMKSGFS 560

Query: 79  RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
           RIPVYE+ RTNIVTM YIKDLA VDPDDN PLKTLCQFYQN C F+FED  LD++ KQFK
Sbjct: 561 RIPVYENVRTNIVTMLYIKDLAFVDPDDNMPLKTLCQFYQNPCNFIFEDVRLDIMFKQFK 620

Query: 139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRH 198
           EG KGHMAFV RVNNEGEGDPFYE +GL+TLEDVIEELIQAEI+DETDV+ DN+ K KR 
Sbjct: 621 EGHKGHMAFVQRVNNEGEGDPFYEVIGLVTLEDVIEELIQAEIIDETDVFMDNRSKRKRQ 680

Query: 199 KQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSS-------NFYVGSLLDRITQ-- 249
            +     +DFT+FAEK E QRIHISPQL LA +Q+LS+       +    ++L R+ +  
Sbjct: 681 VRPKM-PKDFTIFAEKKENQRIHISPQLTLAMYQYLSTTVDTFKPDVISETILRRLLKQD 739

Query: 250 -----KGTSQQKPTFKS---LKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGC 301
                K  S++K        + ++ K VDYFVLILEGR EV VGKEN+++E+GPF+YFG 
Sbjct: 740 IIYHIKVKSREKAKTDPAAIIYQQGKAVDYFVLILEGRVEVTVGKENMMFESGPFTYFGS 799

Query: 302 QALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRS 361
           QALT NIGIAESPTN   A     GS+QSVNLDS+LR+TF+PDY+VRA TE+FYVK++RS
Sbjct: 800 QALTANIGIAESPTN---ANPQTVGSIQSVNLDSMLRHTFIPDYTVRAVTEVFYVKVKRS 856

Query: 362 FYLAAKRATLMEKSKKSEESMSAGDQFEDEVEK 394
            YLAAKRATL+EKS+K  + + + +QF+DEVEK
Sbjct: 857 LYLAAKRATLLEKSQK--DPLPSQEQFDDEVEK 887

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	396
FB|FBgn0262124	834	uex "unextended" [Drosophila m	0.911	0.432	0.579	3.8e-110
ZFIN|ZDB-GENE-050208-36	811	cnnm2a "cyclin M2a" [Danio rer	0.772	0.377	0.509	1.2e-85
UNIPROTKB|Q9H8M5	875	CNNM2 "Metal transporter CNNM2	0.714	0.323	0.529	1.1e-82
MGI|MGI:2151054	875	Cnnm2 "cyclin M2" [Mus musculu	0.714	0.323	0.529	3.6e-82
UNIPROTKB|E2RJ19	875	CNNM2 "Uncharacterized protein	0.714	0.323	0.529	4.5e-82
RGD|1308162	875	Cnnm2 "cyclin M2" [Rattus norv	0.714	0.323	0.529	4.5e-82
UNIPROTKB|Q5U2P1	875	Cnnm2 "Metal transporter CNNM2	0.714	0.323	0.529	4.5e-82
UNIPROTKB|F1ND49	598	CNNM2 "Uncharacterized protein	0.717	0.474	0.524	4.5e-82
UNIPROTKB|Q9NRU3	951	CNNM1 "Metal transporter CNNM1	0.707	0.294	0.511	1.5e-77
UNIPROTKB|F1MD84	941	CNNM1 "Uncharacterized protein	0.707	0.297	0.508	6.6e-77

FB|FBgn0262124 uex "unextended" [Drosophila melanogaster (taxid:7227)]

 Score = 1088 (388.1 bits), Expect = 3.8e-110, P = 3.8e-110
 Identities = 227/392 (57%), Positives = 285/392 (72%)

Query:    19 VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
             VT + NDL+K+EVNIISGALELR+K V DVMT + D +MLS DA+LDFETVSEIM SGYS
Sbjct:   350 VTNDVNDLDKNEVNIISGALELRKKTVADVMTHINDAFMLSLDALLDFETVSEIMNSGYS 409

Query:    79 RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
             RIPVY+  R NIVT+ YIKDLA VD DDNTPLKTLC+FYQN  +FVFED TLD++  QFK
Sbjct:   410 RIPVYDGDRKNIVTLLYIKDLAFVDTDDNTPLKTLCEFYQNPVHFVFEDYTLDIMFNQFK 469

Query:   139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRH 198
             EG  GH+AFVHRVNNEG+GDPFYETVGL+TLEDVIEELIQAEI+DETDV+ DN+ KT+R+
Sbjct:   470 EGTIGHIAFVHRVNNEGDGDPFYETVGLVTLEDVIEELIQAEIVDETDVFVDNRTKTRRN 529

Query:   199 KQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLS-----------SNFYVGSLLDR- 246
             +   ++  DF+ FAE+ E Q + ISPQL LATFQ+LS           S   +  LL++ 
Sbjct:   530 R---YKKADFSAFAERREVQTVRISPQLTLATFQYLSTAVDAFKKDVISELILRRLLNQD 586

Query:   247 ----ITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQ 302
                 I  KG S+  P+   +  + K VD+FVLILEGR EV +GKE L++E+GPF+YFG Q
Sbjct:   587 VFHNIKTKGKSKDDPSLY-IFTQGKAVDFFVLILEGRVEVTIGKEALMFESGPFTYFGTQ 645

Query:   303 ALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSF 362
             AL  N+ + +SPT          GSLQS+N+DS +R +FVPDYSVRA +++ Y+ I+R  
Sbjct:   646 ALVPNV-VIDSPTQM--------GSLQSLNMDSKIRQSFVPDYSVRAISDVIYITIKRVL 696

Query:   363 YLAAKRATLMXXXXXXXXXMSAGDQFEDEVEK 394
             YL AK+ATL+          S  + F+DEVE+
Sbjct:   697 YLTAKKATLLEKSRKSGTFSS--ETFDDEVER 726

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006873 "cellular ion homeostasis" evidence=ISS

ZFIN|ZDB-GENE-050208-36 cnnm2a "cyclin M2a" [Danio rerio (taxid:7955)]

 Score = 781 (280.0 bits), Expect = 1.2e-85, Sum P(2) = 1.2e-85
 Identities = 166/326 (50%), Positives = 223/326 (68%)

Query:    19 VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
             VT  +NDL K+E+NII GALELR K V DVMT L D +M+S DAILDF T+SEIM+SGY+
Sbjct:   363 VTDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMISGDAILDFATMSEIMESGYT 422

Query:    79 RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
             RIPVYE  R +IV + ++KDLA VDPDD TPLKT+ +FY +  +FVF DT LD +L++FK
Sbjct:   423 RIPVYEGERCHIVDLLFVKDLAFVDPDDCTPLKTITKFYSHPLHFVFNDTKLDAMLEEFK 482

Query:   139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRH 198
             +G K H+A V RVNNEGEGDPFYE +G++TLEDVIEE+I++EI+DETD++TDN  KTK+ 
Sbjct:   483 KG-KSHLAIVQRVNNEGEGDPFYEVLGIVTLEDVIEEIIKSEILDETDLYTDN--KTKKK 539

Query:   199 KQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSS---NFYVGSLLDRITQK----- 250
                  + QDF+ F       R+ ISPQL LAT +FL++   +F    + ++I  +     
Sbjct:   540 IAHREKKQDFSAFKPTENELRVKISPQLLLATLRFLATEVESFSATQMSEKILLRLLKHP 599

Query:   251 --------GTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQ 302
                         +K +   L  RNKPVDYF+LIL+G+ EV  GKE + +EAG FSY+G  
Sbjct:   600 NVIQELKYDDKDKKMSEHYLFHRNKPVDYFILILQGKVEVEAGKEGMKFEAGAFSYYGVL 659

Query:   303 ALTQN-IGIAESPTNNSSAAQAYGGS 327
             +LT + + ++ S T   S A++  GS
Sbjct:   660 SLTSSPVPLSLSRTFVVSRAESLAGS 685

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9H8M5 CNNM2 "Metal transporter CNNM2" [Homo sapiens (taxid:9606)]

 Score = 764 (274.0 bits), Expect = 1.1e-82, Sum P(2) = 1.1e-82
 Identities = 161/304 (52%), Positives = 213/304 (70%)

Query:    19 VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
             VT  +NDL K+E+NII GALELR K V DVMT L D +M++ +AILDF T+SEIM+SGY+
Sbjct:   420 VTDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYT 479

Query:    79 RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
             RIPV+E  R+NIV + ++KDLA VDPDD TPLKT+ +FY +  +FVF DT LD +L++FK
Sbjct:   480 RIPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFK 539

Query:   139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTK-R 197
             +G K H+A V RVNNEGEGDPFYE +G++TLEDVIEE+I++EI+DETD++TDN+ K K  
Sbjct:   540 KG-KSHLAIVQRVNNEGEGDPFYEVLGIVTLEDVIEEIIKSEILDETDLYTDNRTKKKVA 598

Query:   198 HKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNFYVGS--------LLDRITQ 249
             H++   R QDF+ F +     ++ ISPQL LA  +FL++     S        LL  +  
Sbjct:   599 HRE---RKQDFSAFKQTDSEMKVKISPQLLLAMHRFLATEVEAFSPSQMSEKILLRLLKH 655

Query:   250 KGTSQQ-KPTFKSLK-------KRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGC 301
                 Q+ K   K+ K       +RNKPVDYFVLIL+G+ EV  GKE + +EA  FSY+G 
Sbjct:   656 PNVIQELKYDEKNKKAPEYYLYQRNKPVDYFVLILQGKVEVEAGKEGMKFEASAFSYYGV 715

Query:   302 QALT 305
              ALT
Sbjct:   716 MALT 719

GO:0016021 "integral to membrane" evidence=IEA

GO:0015693 "magnesium ion transport" evidence=IEA

GO:0010960 "magnesium ion homeostasis" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IMP

MGI|MGI:2151054 Cnnm2 "cyclin M2" [Mus musculus (taxid:10090)]

 Score = 764 (274.0 bits), Expect = 3.6e-82, Sum P(2) = 3.6e-82
 Identities = 161/304 (52%), Positives = 213/304 (70%)

Query:    19 VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
             VT  +NDL K+E+NII GALELR K V DVMT L D +M++ +AILDF T+SEIM+SGY+
Sbjct:   420 VTDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYT 479

Query:    79 RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
             RIPV+E  R+NIV + ++KDLA VDPDD TPLKT+ +FY +  +FVF DT LD +L++FK
Sbjct:   480 RIPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFK 539

Query:   139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTK-R 197
             +G K H+A V RVNNEGEGDPFYE +G++TLEDVIEE+I++EI+DETD++TDN+ K K  
Sbjct:   540 KG-KSHLAIVQRVNNEGEGDPFYEVLGIVTLEDVIEEIIKSEILDETDLYTDNRTKKKVA 598

Query:   198 HKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNFYVGS--------LLDRITQ 249
             H++   R QDF+ F +     ++ ISPQL LA  +FL++     S        LL  +  
Sbjct:   599 HRE---RKQDFSAFKQTDSEMKVKISPQLLLAMHRFLATEVEAFSPSQMSEKILLRLLKH 655

Query:   250 KGTSQQ-KPTFKSLK-------KRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGC 301
                 Q+ K   K+ K       +RNKPVDYFVLIL+G+ EV  GKE + +EA  FSY+G 
Sbjct:   656 PNVIQELKYDEKNKKAPECYLYQRNKPVDYFVLILQGKVEVEAGKEGMKFEASAFSYYGV 715

Query:   302 QALT 305
              ALT
Sbjct:   716 MALT 719

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0010960 "magnesium ion homeostasis" evidence=ISO

GO:0015693 "magnesium ion transport" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=ISO;IDA

UNIPROTKB|E2RJ19 CNNM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 764 (274.0 bits), Expect = 4.5e-82, Sum P(2) = 4.5e-82
 Identities = 161/304 (52%), Positives = 213/304 (70%)

Query:    19 VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
             VT  +NDL K+E+NII GALELR K V DVMT L D +M++ +AILDF T+SEIM+SGY+
Sbjct:   420 VTDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYT 479

Query:    79 RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
             RIPV+E  R+NIV + ++KDLA VDPDD TPLKT+ +FY +  +FVF DT LD +L++FK
Sbjct:   480 RIPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFK 539

Query:   139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTK-R 197
             +G K H+A V RVNNEGEGDPFYE +G++TLEDVIEE+I++EI+DETD++TDN+ K K  
Sbjct:   540 KG-KSHLAIVQRVNNEGEGDPFYEVLGIVTLEDVIEEIIKSEILDETDLYTDNRTKKKVA 598

Query:   198 HKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNFYVGS--------LLDRITQ 249
             H++   R QDF+ F +     ++ ISPQL LA  +FL++     S        LL  +  
Sbjct:   599 HRE---RKQDFSAFKQTDSEMKVKISPQLLLAMHRFLATEVEAFSPSQMSEKILLRLLKH 655

Query:   250 KGTSQQ-KPTFKSLK-------KRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGC 301
                 Q+ K   K+ K       +RNKPVDYFVLIL+G+ EV  GKE + +EA  FSY+G 
Sbjct:   656 PNVIQELKYDEKNKKAPEYYLYQRNKPVDYFVLILQGKVEVEAGKEGMKFEASAFSYYGV 715

Query:   302 QALT 305
              ALT
Sbjct:   716 MALT 719

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0015693 "magnesium ion transport" evidence=IEA

GO:0010960 "magnesium ion homeostasis" evidence=IEA

RGD|1308162 Cnnm2 "cyclin M2" [Rattus norvegicus (taxid:10116)]

 Score = 763 (273.6 bits), Expect = 4.5e-82, Sum P(2) = 4.5e-82
 Identities = 161/304 (52%), Positives = 213/304 (70%)

Query:    19 VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
             VT  +NDL K+E+NII GALELR K V DVMT L D +M++ +AILDF T+SEIM+SGY+
Sbjct:   420 VTDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYT 479

Query:    79 RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
             RIPV+E  R+NIV + ++KDLA VDPDD TPLKT+ +FY +  +FVF DT LD +L++FK
Sbjct:   480 RIPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFK 539

Query:   139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTK-R 197
             +G K H+A V RVNNEGEGDPFYE +G++TLEDVIEE+I++EI+DETD++TDN+ K K  
Sbjct:   540 KG-KSHLAIVQRVNNEGEGDPFYEVLGIVTLEDVIEEIIKSEILDETDLYTDNRTKKKVA 598

Query:   198 HKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNFYVGS--------LLDRITQ 249
             H++   R QDF+ F +     ++ ISPQL LA  +FL++     S        LL  +  
Sbjct:   599 HRE---RKQDFSAFKQTDSETKVKISPQLLLAMHRFLATEVEAFSPSQMSEKILLRLLKH 655

Query:   250 KGTSQQ-KPTFKSLK-------KRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGC 301
                 Q+ K   K+ K       +RNKPVDYFVLIL+G+ EV  GKE + +EA  FSY+G 
Sbjct:   656 PNVIQELKYDEKNKKAPECYLYQRNKPVDYFVLILQGKVEVEAGKEGMKFEASAFSYYGV 715

Query:   302 QALT 305
              ALT
Sbjct:   716 MALT 719

GO:0010960 "magnesium ion homeostasis" evidence=IEA;ISO

GO:0015693 "magnesium ion transport" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA;ISO

UNIPROTKB|Q5U2P1 Cnnm2 "Metal transporter CNNM2" [Rattus norvegicus (taxid:10116)]

 Score = 763 (273.6 bits), Expect = 4.5e-82, Sum P(2) = 4.5e-82
 Identities = 161/304 (52%), Positives = 213/304 (70%)

Query:    19 VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
             VT  +NDL K+E+NII GALELR K V DVMT L D +M++ +AILDF T+SEIM+SGY+
Sbjct:   420 VTDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYT 479

Query:    79 RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
             RIPV+E  R+NIV + ++KDLA VDPDD TPLKT+ +FY +  +FVF DT LD +L++FK
Sbjct:   480 RIPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFK 539

Query:   139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTK-R 197
             +G K H+A V RVNNEGEGDPFYE +G++TLEDVIEE+I++EI+DETD++TDN+ K K  
Sbjct:   540 KG-KSHLAIVQRVNNEGEGDPFYEVLGIVTLEDVIEEIIKSEILDETDLYTDNRTKKKVA 598

Query:   198 HKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNFYVGS--------LLDRITQ 249
             H++   R QDF+ F +     ++ ISPQL LA  +FL++     S        LL  +  
Sbjct:   599 HRE---RKQDFSAFKQTDSETKVKISPQLLLAMHRFLATEVEAFSPSQMSEKILLRLLKH 655

Query:   250 KGTSQQ-KPTFKSLK-------KRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGC 301
                 Q+ K   K+ K       +RNKPVDYFVLIL+G+ EV  GKE + +EA  FSY+G 
Sbjct:   656 PNVIQELKYDEKNKKAPECYLYQRNKPVDYFVLILQGKVEVEAGKEGMKFEASAFSYYGV 715

Query:   302 QALT 305
              ALT
Sbjct:   716 MALT 719

GO:0010960 "magnesium ion homeostasis" evidence=IEA

GO:0015693 "magnesium ion transport" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

UNIPROTKB|F1ND49 CNNM2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 759 (272.2 bits), Expect = 4.5e-82, Sum P(2) = 4.5e-82
 Identities = 159/303 (52%), Positives = 213/303 (70%)

Query:    19 VTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78
             VT  +NDL K+E+NII GALELR K V DVMT L D +M++ +A+LDF T+SEIM+SGY+
Sbjct:   143 VTDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMIAAEAVLDFNTMSEIMESGYT 202

Query:    79 RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
             RIPV+E  R+NIV + ++KDLA VDPDD T LKT+ +FY +  +FVF DT LD +L++FK
Sbjct:   203 RIPVFEGDRSNIVDLLFVKDLAFVDPDDCTLLKTITRFYNHPLHFVFNDTKLDAMLEEFK 262

Query:   139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRH 198
             +G K H+A V RVNNEGEGDPFYE +G++TLEDVIEE+I++EI+DETD++TDN  KTK+ 
Sbjct:   263 KG-KSHLAIVQRVNNEGEGDPFYEVLGIVTLEDVIEEIIKSEILDETDLYTDN--KTKKK 319

Query:   199 KQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSN---FYVGSLLDRITQK----- 250
                  R QDF+ F +     ++ ISPQL LA  +FL++    F    + ++I  +     
Sbjct:   320 VAHRDRKQDFSAFKQTDSEMKVKISPQLLLAMHRFLATEVEAFGPSQMSEKILLRLLKHP 379

Query:   251 GTSQQ-KPTFKSLK-------KRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQ 302
                Q+ K   K+ K       +RNKPVDYFVLIL+G+ EV  GKE + +EAG FSY+G  
Sbjct:   380 NVIQELKYDEKNKKAPEHYLYQRNKPVDYFVLILQGKVEVEAGKEGMKFEAGAFSYYGVM 439

Query:   303 ALT 305
             ALT
Sbjct:   440 ALT 442

GO:0010960 "magnesium ion homeostasis" evidence=IEA

GO:0015693 "magnesium ion transport" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

UNIPROTKB|Q9NRU3 CNNM1 "Metal transporter CNNM1" [Homo sapiens (taxid:9606)]

 Score = 730 (262.0 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
 Identities = 153/299 (51%), Positives = 212/299 (70%)

Query:    23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPV 82
             ++DL K+E+NII GALELR K+V +V+T L D +ML  DA+LDF TVSEI++SGY+RIPV
Sbjct:   407 YSDLVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSGYTRIPV 466

Query:    83 YE-DRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGI 141
             YE D+R NIV + ++KDLA VDPDD TPL T+ +FY    + VF DT LD +L++FK+G 
Sbjct:   467 YEGDQRHNIVDILFVKDLAFVDPDDCTPLLTVTRFYNRPLHCVFNDTRLDTVLEEFKKG- 525

Query:   142 KGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQS 201
             K H+A V RVNNEGEGDPFYE +G++TLED+IEE+I++EI+DETD++TDN+ K +R  Q 
Sbjct:   526 KSHLAIVQRVNNEGEGDPFYEVMGIVTLEDIIEEIIKSEILDETDLYTDNRKK-QRVPQR 584

Query:   202 SHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSS------NFYVGS-LLDRITQKGTSQ 254
               +  DF+LF       R+ ISPQL LAT +F+++      + Y+   +L R+ +     
Sbjct:   585 ERKRHDFSLFKLSDTEMRVKISPQLLLATHRFMATEVEPFKSLYLSEKILLRLLKHPNVI 644

Query:   255 QKPTF--KSLK-------KRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQAL 304
             Q+  F  K+ K       +RN+PVDYFVL+L+G+ EV VGKE L +E G F+Y+G  A+
Sbjct:   645 QELKFDEKNKKAPEHYLYQRNRPVDYFVLLLQGKVEVEVGKEGLRFENGAFTYYGVPAI 703

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1MD84 CNNM1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 726 (260.6 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
 Identities = 152/299 (50%), Positives = 211/299 (70%)

Query:    23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPV 82
             ++DL K+E+NII GALELR K+V +V+T L D +ML  DA+LDF TVSEI++SGY+RIPV
Sbjct:   406 YSDLVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSGYTRIPV 465

Query:    83 YE-DRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGI 141
             YE D+R NIV + ++KDLA VDPDD TPL T+ +FY    + VF DT LD +L++FK+G 
Sbjct:   466 YEGDQRHNIVDILFVKDLAFVDPDDCTPLLTVTRFYNRPLHCVFNDTRLDTVLEEFKKG- 524

Query:   142 KGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQS 201
             K H+A V RVNNEGEGDPFYE +G++TLED+IEE+I++EI+DETD++TDN+ K +R    
Sbjct:   525 KSHLAIVQRVNNEGEGDPFYEVMGIVTLEDIIEEIIKSEILDETDLYTDNRKK-QRVPHR 583

Query:   202 SHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSS------NFYVGS-LLDRITQKGTSQ 254
               +  DF+LF       R+ ISPQL LAT +F+++      + Y+   +L R+ +     
Sbjct:   584 ERKRHDFSLFKLSDSEMRVKISPQLLLATHRFMATEVEPFKSLYLSEKILLRLLKHPNVI 643

Query:   255 QKPTF--KSLK-------KRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQAL 304
             Q+  F  K+ K       +RN+PVDYFVL+L+G+ EV VGKE L +E G F+Y+G  A+
Sbjct:   644 QELKFDEKNKKAPEHYLYQRNRPVDYFVLLLQGKVEVEVGKEGLRFENGAFTYYGVPAI 702

GO:0005886 "plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	396
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	4e-32
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	1e-21
TIGR03520	408	TIGR03520, GldE, gliding motility-associated prote	4e-19
COG4536	423	COG4536, CorB, Putative Mg2+ and Co2+ transporter	9e-16
COG4535	293	COG4535, CorC, Putative Mg2+ and Co2+ transporter	2e-11
PRK15094	292	PRK15094, PRK15094, magnesium/cobalt efflux protei	2e-07

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score =  125 bits (316), Expect = 4e-32
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 13/171 (7%)

Query: 26  LEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYED 85
           LE++E  +I+  L+L  + V ++MT   D+  L     ++ E +  I++SG+SRIPVY+ 
Sbjct: 189 LEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELILESGHSRIPVYDG 247

Query: 86  RRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHM 145
              NI+ + ++KDL     D         +       FV E  +L  LL++F+E  + HM
Sbjct: 248 DLDNIIGIVHVKDLLRALLDG--QSDLDLRVLVRPPLFVPETLSLSDLLEEFREE-RTHM 304

Query: 146 AFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTK 196
           A V         D +    GL+TLED+IEE++  EI DE D   +     +
Sbjct: 305 AIVV--------DEYGGVEGLVTLEDIIEEIVG-EIPDEHDEDEEEDIIQR 346

Length = 429

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 88.3 bits (220), Expect = 1e-21
 Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 24/128 (18%)

Query: 54  DVYMLSYDAILDFETVSEIMK----SGYSRIPVYEDRRTNIVTMFYIKDL--ALVDPDDN 107
           D+  L  D      T+ EI++    SG+SR PVY+    NI+ + ++KDL  AL + +++
Sbjct: 2   DIVALDADD-----TLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEED 56

Query: 108 TPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLI 167
             L+ L +       FV E T LD LL++ ++  + HMA V  V+  G       T GL+
Sbjct: 57  LDLRDLLR----PPLFVPESTPLDDLLEEMRKE-RSHMAIV--VDEYG------GTAGLV 103

Query: 168 TLEDVIEE 175
           TLED++EE
Sbjct: 104 TLEDILEE 111

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|132559 TIGR03520, GldE, gliding motility-associated protein GldE

 Score = 87.8 bits (218), Expect = 4e-19
 Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 17/167 (10%)

Query: 21  TEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDF-ETVSEIMKSGYSR 79
           T+  D  K+E  I+ G +         VM    D++ L  +    F E + +I+++GYSR
Sbjct: 169 TDEEDTTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIET--SFSEIIPKIIENGYSR 226

Query: 80  IPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKE 139
           IPVY++   NI  + YIKDL       N   ++L +      YFV E+  LD LL+ F+E
Sbjct: 227 IPVYKETIDNITGVLYIKDLLPHLNKKNFDWQSLLR----EPYFVPENKKLDDLLRDFQE 282

Query: 140 GIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETD 186
             K H+A V         D +  T GL+TLED+IEE++  +I DE D
Sbjct: 283 K-KNHLAIVV--------DEYGGTSGLVTLEDIIEEIV-GDISDEFD 319

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. Length = 408

>gnl|CDD|226911 COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

 Score = 78.1 bits (193), Expect = 9e-16
 Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 15/172 (8%)

Query: 26  LEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFET-VSEIMKSGYSRIPVYE 84
           + K + +++ G L+L    V D+M    +  ++  D    +E  V +++ S ++RIP+Y 
Sbjct: 183 VNKIDRDMLLGVLDLENLTVSDIMVPRNE--IIGIDIDDPWEEIVRQLLHSPHTRIPLYR 240

Query: 85  DRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGH 144
           D   NI+ + +++DL  +  + N   K       +  YFV E T L   L  F+   K H
Sbjct: 241 DDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVPEGTPLSDQLVAFQRN-KKH 299

Query: 145 MAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTK 196
           +A V  V+  G      +  GL+TLED++EE++  +  DE D  T  +    
Sbjct: 300 IALV--VDEYG------DIQGLVTLEDILEEIV-GDFTDEHD--TLAKEVIP 340

Length = 423

>gnl|CDD|226910 COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 19/181 (10%)

Query: 22  EFNDL-EKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRI 80
           E N+L + D ++++ G +++    V D+M     +  L  +  LD E +  I++S +SR 
Sbjct: 45  EQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRF 103

Query: 81  PVYEDRRTNIVTMFYIKDL--ALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
           PV  + + ++  +   KDL   +    +   +K L +        V E   +D LLK+F+
Sbjct: 104 PVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKELLR----PAVVVPESKRVDRLLKEFR 159

Query: 139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDV-WTDNQHKTKR 197
              + HMA V         D F    GL+T+ED++ E I  +I DE D     +  +  R
Sbjct: 160 SQ-RNHMAIVI--------DEFGGVSGLVTIEDIL-EQIVGDIEDEYDEEEDADIRQLSR 209

Query: 198 H 198
           H
Sbjct: 210 H 210

Length = 293

>gnl|CDD|185050 PRK15094, PRK15094, magnesium/cobalt efflux protein CorC; Provisional

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 24/177 (13%)

Query: 14  VRDHDVTTEFNDL-EKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEI 72
           +RD    +E NDL ++D  +++ G +++  + V D+M     +  L  +  LD E +  I
Sbjct: 41  IRD----SEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVI 95

Query: 73  MKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPL---KTLCQFYQNSCYFVFEDTT 129
           ++S +SR PV  + + +I  +   KDL      D       K L          V E   
Sbjct: 96  IESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL-----RQAVVVPESKR 150

Query: 130 LDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETD 186
           +D +LK+F+   + HMA V         D F    GL+T+ED++ ELI  EI DE D
Sbjct: 151 VDRMLKEFRS-QRYHMAIVI--------DEFGGVSGLVTIEDIL-ELIVGEIEDEYD 197

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	396
PRK11573	413	hypothetical protein; Provisional	100.0
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.98
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.97
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.97
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.97
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.96
KOG2118|consensus	498		99.83
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.63
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.56
COG2524	294	Predicted transcriptional regulator, contains C-te	99.47
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.46
COG4109	432	Predicted transcriptional regulator containing CBS	99.43
COG3620	187	Predicted transcriptional regulator with C-termina	99.37
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.37
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.36
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.35
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.34
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.33
KOG2118|consensus	498		99.32
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.32
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.32
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.3
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.29
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.29
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.29
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.28
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.27
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.26
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.26
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.26
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.25
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.25
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.25
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.24
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.24
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.24
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.24
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.24
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.24
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.22
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.22
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.22
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.22
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.22
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.21
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.2
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.2
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.2
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.2
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.2
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.2
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.19
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.19
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.19
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.18
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.17
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.17
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.17
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.17
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.16
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.16
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.15
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.14
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.14
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.14
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.14
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.14
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.14
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.14
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.13
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.13
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.13
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.13
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.12
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.12
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.12
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.1
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.09
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.09
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.09
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.08
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.08
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.07
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.04
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.03
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.03
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.01
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.01
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.97
COG0517	117	FOG: CBS domain [General function prediction only]	98.92
COG2905	610	Predicted signal-transduction protein containing c	98.55
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.54
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.49
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.42
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.41
KOG1764|consensus	381		98.32
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	98.22
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	98.17
cd00038	115	CAP_ED effector domain of the CAP family of transc	98.13
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.11
smart00100	120	cNMP Cyclic nucleotide-monophosphate binding domai	98.07
COG0664	214	Crp cAMP-binding proteins - catabolite gene activa	98.0
PRK09392	236	ftrB transcriptional activator FtrB; Provisional	97.97
KOG2550|consensus	503		97.91
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.83
TIGR03697	193	NtcA_cyano global nitrogen regulator NtcA, cyanoba	97.74
PRK10402	226	DNA-binding transcriptional activator YeiL; Provis	97.73
PRK11161	235	fumarate/nitrate reduction transcriptional regulat	97.67
KOG0474|consensus	762		97.64
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	97.62
PLN03192	823	Voltage-dependent potassium channel; Provisional	97.57
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	97.54
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	97.54
PLN02868	413	acyl-CoA thioesterase family protein	97.47
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	97.45
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	97.44
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	97.43
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.42
PRK13918	202	CRP/FNR family transcriptional regulator; Provisio	97.41
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	97.36
PRK09391	230	fixK transcriptional regulator FixK; Provisional	97.32
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	97.23
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	97.21
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	97.2
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.19
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.18
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.14
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.14
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.12
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	97.12
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	97.12
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	97.12
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.12
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	97.1
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	97.1
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	97.08
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	97.08
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	97.04
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	97.04
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.03
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	97.03
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	97.02
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.01
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	96.99
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	96.98
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	96.96
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	96.96
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	96.95
COG2524	294	Predicted transcriptional regulator, contains C-te	96.94
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	96.94
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	96.91
KOG0475|consensus	696		96.9
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	96.89
PLN02274	505	inosine-5'-monophosphate dehydrogenase	96.88
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	96.88
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	96.86
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	96.85
COG0517	117	FOG: CBS domain [General function prediction only]	96.84
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	96.83
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	96.83
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	96.83
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	96.82
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	96.82
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	96.81
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	96.8
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	96.77
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	96.76
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	96.76
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	96.75
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	96.73
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	96.73
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	96.73
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	96.7
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	96.69
KOG1764|consensus	381		96.69
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	96.64
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	96.63
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	96.57
COG3448	382	CBS-domain-containing membrane protein [Signal tra	96.55
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	96.5
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	96.5
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	96.49
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	96.44
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	96.41
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.38
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	96.38
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	96.38
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	96.32
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	96.27
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	96.26
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	96.24
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	96.24
COG2905	610	Predicted signal-transduction protein containing c	96.12
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	95.99
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	95.99
KOG0498|consensus	727		95.96
KOG0614|consensus	732		95.92
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	95.89
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	95.88
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	95.86
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	95.74
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	95.72
PRK01862	574	putative voltage-gated ClC-type chloride channel C	95.71
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	95.65
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	95.59
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	95.45
KOG1113|consensus	368		95.23
COG3620	187	Predicted transcriptional regulator with C-termina	94.84
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	94.75
PRK11832	207	putative DNA-binding transcriptional regulator; Pr	92.94
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	92.84
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	91.02
KOG1113|consensus	368		90.41
KOG2550|consensus	503		90.07
COG4109	432	Predicted transcriptional regulator containing CBS	88.64
KOG0614|consensus	732		87.64
PRK11573	413	hypothetical protein; Provisional	85.17
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	85.15
PF04831	153	Popeye: Popeye protein conserved region; InterPro:	84.93
COG1253	429	TlyC Hemolysins and related proteins containing CB	80.91

>PRK11573 hypothetical protein; Provisional

Probab=100.00  E-value=2.7e-32  Score=278.83  Aligned_cols=200  Identities=17%  Similarity=0.325  Sum_probs=166.3

Q ss_pred             CCCHHHHHHHHHccccccccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEE
Q psy4847           2 CVHPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIP   81 (396)
Q Consensus         2 ~~~~~Elk~ll~~~~~~~~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriP   81 (396)
                      .+|++||+.+++.+     .+  .++++|.+||.++|+|++++|+||||||.++++++.++++. ++++.+.++||||+|
T Consensus       153 ~~s~eEl~~lv~~~-----~~--~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~P  224 (413)
T PRK11573        153 ALSKEELRTIVHES-----RS--QISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIV  224 (413)
T ss_pred             CCCHHHHHHHHHHH-----hh--hcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEE
Confidence            36899999999985     22  59999999999999999999999999999999999999999 999999999999999


Q ss_pred             EEeCCCCcEEEEEEhhhhcccCCc-cccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCC
Q psy4847          82 VYEDRRTNIVTMFYIKDLALVDPD-DNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF  160 (396)
Q Consensus        82 V~~~~~~~IVGiL~vkDLl~~~~~-~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~  160 (396)
                      ||+++.++|+|+|++|||+..... ...+..++.++ .+++.+||+++++.++|+.|+++ +.|||+|+        |||
T Consensus       225 Vy~~~~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~l~~lL~~~~~~-~~~~AiVv--------DEy  294 (413)
T PRK11573        225 LYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTPLSTQLVKFQRN-KKKVGLVV--------DEY  294 (413)
T ss_pred             EEcCCCCceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCcHHHHHHHHHhc-CCeEEEEE--------ecC
Confidence            999888999999999999753221 22234445444 37899999999999999999995 99999999        999


Q ss_pred             CceeeeecHHHHHHHHHhcccccccccccccccccccccCCCCCCccccchhccccccccccCchhhHHHHH-Hhhcccc
Q psy4847         161 YETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQ-FLSSNFY  239 (396)
Q Consensus       161 g~~vGIVTleDIiEeli~~eI~DE~D~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~q~~la~~~-~Ls~~~~  239 (396)
                      |+++||||+|||+|+|+ |||.||+|...+..                   +.+.+++.|.+++.+.+..++ .|....+
T Consensus       295 G~~~GiVTleDilEeiv-Gei~de~d~~~~~~-------------------i~~~~~~~~~v~G~~~l~d~~~~l~~~l~  354 (413)
T PRK11573        295 GDIQGLVTVEDILEEIV-GDFTTSMSPTLAEE-------------------VTPQNDGSVIIDGTANVREINKAFNWHLP  354 (413)
T ss_pred             CCeEEEeeHHHHHHHHh-CCCCcccCcccccc-------------------eEEecCCEEEEEeeeEHHHHHHHhCCCCC
Confidence            99999999999999999 89999987421110                   223345678888888888765 3444443

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.98  E-value=1.6e-31  Score=273.01  Aligned_cols=195  Identities=32%  Similarity=0.478  Sum_probs=163.3

Q ss_pred             CCCHHHHHHHHHccccccccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEE
Q psy4847           2 CVHPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIP   81 (396)
Q Consensus         2 ~~~~~Elk~ll~~~~~~~~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriP   81 (396)
                      .+|++||+.+++.+     .+.| +.++|.+||.++|+|++++|+|||||+.++++++.++++. ++++.+.++||||+|
T Consensus       156 ~~t~eEl~~lv~~~-----~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~P  228 (408)
T TIGR03520       156 NISVDQLSQALELT-----DEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIP  228 (408)
T ss_pred             CCCHHHHHHHHHhH-----hhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEE
Confidence            36899999999984     3434 7899999999999999999999999999999999999999 999999999999999


Q ss_pred             EEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCC
Q psy4847          82 VYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFY  161 (396)
Q Consensus        82 V~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g  161 (396)
                      ||+++.++|+|+|+.|||+.....+..++.+++    +++.+|++++++.++|+.|+++ +.|+|+|+        |+||
T Consensus       229 V~~~~~d~ivGiv~~kDll~~~~~~~~~l~~~~----~~~~~Vpe~~~l~~ll~~m~~~-~~~~aiVv--------DE~G  295 (408)
T TIGR03520       229 VYKETIDNITGVLYIKDLLPHLNKKNFDWQSLL----REPYFVPENKKLDDLLRDFQEK-KNHLAIVV--------DEYG  295 (408)
T ss_pred             EEcCCCCceEEEEEHHHHHhHhccCCCCHHHHc----CCCeEeCCCCcHHHHHHHHHhc-CceEEEEE--------cCCC
Confidence            999877899999999999854332333455554    6788999999999999999995 89999999        9999


Q ss_pred             ceeeeecHHHHHHHHHhcccccccccccccccccccccCCCCCCccccchhccccccccccCchhhHHHHH-Hhhcc
Q psy4847         162 ETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQ-FLSSN  237 (396)
Q Consensus       162 ~~vGIVTleDIiEeli~~eI~DE~D~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~q~~la~~~-~Ls~~  237 (396)
                      +++||||++||+|+|+ |||.||+|...+                    .+.+.+++++.+++.+++..+. .|..+
T Consensus       296 ~~~GiVT~eDileeiv-gei~de~d~~~~--------------------~i~~~~~~~~~v~G~~~l~~l~~~l~~~  351 (408)
T TIGR03520       296 GTSGLVTLEDIIEEIV-GDISDEFDDEDL--------------------IYSKIDDNNYVFEGKTSLKDFYKILKLE  351 (408)
T ss_pred             CEEEEEEHHHHHHHHh-CCCCCcCCcCcc--------------------ceEEeCCCeEEEEeccCHHHHHHHhCCC
Confidence            9999999999999999 899999884211                    1223445567888888777654 34433

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.97  E-value=1.2e-30  Score=268.06  Aligned_cols=191  Identities=31%  Similarity=0.463  Sum_probs=160.3

Q ss_pred             CCHHHHHHHHHccccccccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEE
Q psy4847           3 VHPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPV   82 (396)
Q Consensus         3 ~~~~Elk~ll~~~~~~~~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV   82 (396)
                      .+.++++ ++..+     .+.|.++++|+.||+++|+|++++|++|||||.++++++.+.++. ++++.+.++||||+||
T Consensus       172 ~~~~~~~-~~~~~-----~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~~~~~~~~SR~PV  244 (429)
T COG1253         172 STEEELE-LVSES-----AEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELILESGHSRIPV  244 (429)
T ss_pred             ccHHHHH-HHHhH-----HhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHHHHHhCCCCeeeE
Confidence            4456666 77764     678999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             EeCCCCcEEEEEEhhhhcccCCccc--cchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCC
Q psy4847          83 YEDRRTNIVTMFYIKDLALVDPDDN--TPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF  160 (396)
Q Consensus        83 ~~~~~~~IVGiL~vkDLl~~~~~~~--~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~  160 (396)
                      |+++.++++|++++|||+....+..  ......    .+++++||+++++.++|++|++. +.|||+|+        |||
T Consensus       245 ~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~----~~~~~~Vpet~~~~~lL~~~r~~-~~hmAiVv--------DEy  311 (429)
T COG1253         245 YDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVL----VRPPLFVPETLSLSDLLEEFREE-RTHMAIVV--------DEY  311 (429)
T ss_pred             EcCCCCcEEEEEEHHHHHHHHhcCccccchhhc----ccCCeEecCCCcHHHHHHHHHHh-CCeEEEEE--------EcC
Confidence            9988899999999999987654432  112211    25899999999999999999995 99999999        999


Q ss_pred             CceeeeecHHHHHHHHHhcccccccccccccccccccccCCCCCCccccchhccccccccccCchhhHHHHHH
Q psy4847         161 YETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQF  233 (396)
Q Consensus       161 g~~vGIVTleDIiEeli~~eI~DE~D~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~q~~la~~~~  233 (396)
                      |++.|+||+|||+|+|+ |||.||+|...+..-                  ....+++ |.+++.+.+..++-
T Consensus       312 G~~~GlVTleDIiEeIv-Gei~de~d~~~~~~~------------------~~~~~~~-~~v~G~~~l~e~~~  364 (429)
T COG1253         312 GGVEGLVTLEDIIEEIV-GEIPDEHDEDEEEDI------------------IQRDDDG-WLVDGRVPLEELEE  364 (429)
T ss_pred             CCeEEEeEHHHHHHHHh-CCCcCcccccccccc------------------eEecCCc-EEEeccccHHHHHH
Confidence            99999999999999999 899999997544220                  1122333 77788888877664

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.97  E-value=7.1e-30  Score=250.12  Aligned_cols=197  Identities=24%  Similarity=0.380  Sum_probs=165.8

Q ss_pred             CHHHHHHHHHccccccccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEE
Q psy4847           4 HPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVY   83 (396)
Q Consensus         4 ~~~Elk~ll~~~~~~~~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~   83 (396)
                      |++||+.+++.+     .+.|.|+++|..+|.++|+|++++|++||||+.++++++.++++. ++++.+.+++|+|+|||
T Consensus        33 t~eEl~~l~~~~-----~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i~~~~~sr~PV~  106 (292)
T PRK15094         33 NRDELLALIRDS-----EQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVI  106 (292)
T ss_pred             CHHHHHHHHHhH-----hhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHHHhcCCcEEEEe
Confidence            689999999985     677999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             eCCCCcEEEEEEhhhhcccCC--ccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCC
Q psy4847          84 EDRRTNIVTMFYIKDLALVDP--DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFY  161 (396)
Q Consensus        84 ~~~~~~IVGiL~vkDLl~~~~--~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g  161 (396)
                      +++.++++|+|++|||+....  .....+.+++    +++++|++++++.++|+.|++. +.|+|+|+        |++|
T Consensus       107 ~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l~----r~~~~V~e~~~l~~~L~~m~~~-~~~~a~Vv--------De~G  173 (292)
T PRK15094        107 SEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL----RQAVVVPESKRVDRMLKEFRSQ-RYHMAIVI--------DEFG  173 (292)
T ss_pred             cCCCCcEEEEEEHHHHHhHhhccCCcCCHHHHc----CCCcCcCCCCcHHHHHHHHHhc-CCEEEEEE--------eCCC
Confidence            876689999999999975322  1122355554    5677999999999999999995 89999999        9999


Q ss_pred             ceeeeecHHHHHHHHHhcccccccccccccccccccccCCCCCCccccchhccccccccccCchhhHHHHH-Hhhcccc
Q psy4847         162 ETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQ-FLSSNFY  239 (396)
Q Consensus       162 ~~vGIVTleDIiEeli~~eI~DE~D~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~q~~la~~~-~Ls~~~~  239 (396)
                      +++||||++||+|+|+ |+|.||+|...+.                   .+.+.++++|.+++.+.+..++ .|...++
T Consensus       174 ~viGiVTleDIle~iv-Gei~de~d~~~~~-------------------~i~~~~~~~~~v~G~~~l~dl~~~l~~~l~  232 (292)
T PRK15094        174 GVSGLVTIEDILELIV-GEIEDEYDEEDDI-------------------DFRQLSRHTWTVRALASIEDFNEAFGTHFS  232 (292)
T ss_pred             CEEEEeEHHHHHHHHh-CCCcccccccccc-------------------ccEEeCCCeEEEEeccCHHHHHHHhCCCCC
Confidence            9999999999999999 8999999853211                   0223456678888888887765 4444443

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.7e-30  Score=240.69  Aligned_cols=167  Identities=28%  Similarity=0.450  Sum_probs=153.0

Q ss_pred             CHHHHHHHHHccccccccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEE
Q psy4847           4 HPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVY   83 (396)
Q Consensus         4 ~~~Elk~ll~~~~~~~~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~   83 (396)
                      +.+||-.+||.+     +..+.++.+-+.||+|+++..+.+|+|||.||+++++|..+.+++ +.+..|.++.||||||+
T Consensus        33 nr~eLl~liRds-----e~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~~l~~iiesaHSRfPVi  106 (293)
T COG4535          33 NREELLELIRDS-----EQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVI  106 (293)
T ss_pred             CHHHHHHHHHHh-----hhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-HHHHHHHHhccccCCcc
Confidence            578999999986     677889999999999999999999999999999999999999999 99999999999999999


Q ss_pred             eCCCCcEEEEEEhhhhcccCCc--cccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCC
Q psy4847          84 EDRRTNIVTMFYIKDLALVDPD--DNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFY  161 (396)
Q Consensus        84 ~~~~~~IVGiL~vkDLl~~~~~--~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g  161 (396)
                      .+++++|.|||..|||+.....  ..+.++.+    .+|..+||++..++.+|+.|+.. +.|||+|+        |+||
T Consensus       107 ~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l----LRPav~VPESKrvd~lLkeFR~~-RnHMAIVi--------DEfG  173 (293)
T COG4535         107 SEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL----LRPAVVVPESKRVDRLLKEFRSQ-RNHMAIVI--------DEFG  173 (293)
T ss_pred             cCCchhhhhhhhHHHHHHHhcCCcccccHHHh----cccceecccchhHHHHHHHHHhh-cCceEEEE--------eccC
Confidence            9999999999999999864332  33566766    48999999999999999999995 99999999        9999


Q ss_pred             ceeeeecHHHHHHHHHhcccccccccccc
Q psy4847         162 ETVGLITLEDVIEELIQAEIMDETDVWTD  190 (396)
Q Consensus       162 ~~vGIVTleDIiEeli~~eI~DE~D~~~d  190 (396)
                      ++.|+||.|||+|.|+ |+|-||+|...+
T Consensus       174 gVsGLVTIEDiLEqIV-GdIEDE~Deee~  201 (293)
T COG4535         174 GVSGLVTIEDILEQIV-GDIEDEYDEEED  201 (293)
T ss_pred             CeeeeEEHHHHHHHHh-cccccccchhhh
Confidence            9999999999999999 899999997643

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.6e-29  Score=246.12  Aligned_cols=194  Identities=25%  Similarity=0.409  Sum_probs=164.5

Q ss_pred             CCCHHHHHHHHHccccccccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEE
Q psy4847           2 CVHPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIP   81 (396)
Q Consensus         2 ~~~~~Elk~ll~~~~~~~~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriP   81 (396)
                      .++.||++.++.++     +.++...+++++|+.|+|+|.+.||.|||+||.++..++.|.+.. +.++.+..+.|+|+|
T Consensus       164 ~~s~EElR~~v~~~-----~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~HtRip  237 (423)
T COG4536         164 LSSKEELRTAVNES-----GSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSPHTRIP  237 (423)
T ss_pred             ccCHHHHHHHHHHh-----hcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCCCCcee
Confidence            57899999999997     667888888999999999999999999999999999999999999 999999999999999


Q ss_pred             EEeCCCCcEEEEEEhhhhcccCCccc-cchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCC
Q psy4847          82 VYEDRRTNIVTMFYIKDLALVDPDDN-TPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF  160 (396)
Q Consensus        82 V~~~~~~~IVGiL~vkDLl~~~~~~~-~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~  160 (396)
                      ||.++.|||+|++++||++.+..+.+ ..-.++++. ..++.|||+.|++.+-|..|+++ +.|+++|+        |||
T Consensus       238 lyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~-a~epyFVPe~Tpl~~QL~~F~~~-k~hialVV--------DEY  307 (423)
T COG4536         238 LYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRA-ADEPYFVPEGTPLSDQLVAFQRN-KKHIALVV--------DEY  307 (423)
T ss_pred             eecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHH-hcCCeecCCCCcHHHHHHHHHHh-cceEEEEE--------ecc
Confidence            99999999999999999986533322 333444443 26788999999999999999995 99999999        999


Q ss_pred             CceeeeecHHHHHHHHHhcccccccccccccccccccccCCCCCCccccchhccccccccccCchhhHHHHH
Q psy4847         161 YETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQ  232 (396)
Q Consensus       161 g~~vGIVTleDIiEeli~~eI~DE~D~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~q~~la~~~  232 (396)
                      |.+.|+||+|||+|||+ |++.||.|...+.                    ...+.++++.+.+..++-..+
T Consensus       308 G~i~GLVTLEDIlEEIV-Gdftde~d~~~~e--------------------v~~q~dgs~iidGs~~iRdlN  358 (423)
T COG4536         308 GDIQGLVTLEDILEEIV-GDFTDEHDTLAKE--------------------VIPQSDGSFIIDGSANVRDLN  358 (423)
T ss_pred             CcEEeeeeHHHHHHHHh-ccccccCcccchh--------------------hcccCCCcEEEeCCCcHHHHH
Confidence            99999999999999999 8999998865432                    122445566666666665544

>KOG2118|consensus

Probab=99.83  E-value=1.1e-20  Score=196.86  Aligned_cols=170  Identities=37%  Similarity=0.506  Sum_probs=138.7

Q ss_pred             HHHHHHHHHccccccccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEe
Q psy4847           5 PQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYE   84 (396)
Q Consensus         5 ~~Elk~ll~~~~~~~~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~   84 (396)
                      ..+++.++..+.... .. |++..+|..+|.|++++.+++|++||||..++++++.+..++++++.++.++||||||||+
T Consensus       168 ~~~l~~lv~~~~~e~-~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~  245 (498)
T KOG2118|consen  168 RASLLALVQLVGNEA-GK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYE  245 (498)
T ss_pred             hHHHHHHHHHHhccc-cc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeecc
Confidence            356666776653211 12 7799999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCcEEEEEEhhhhcccC-CccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCce
Q psy4847          85 DRRTNIVTMFYIKDLALVD-PDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYET  163 (396)
Q Consensus        85 ~~~~~IVGiL~vkDLl~~~-~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~  163 (396)
                      ....+.+|.+..+.++.+. .+.......+..++.++++.+++++++.+.++.|+++ +.||++|.        . ....
T Consensus       246 ~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~-~~H~~~v~--------~-~~~~  315 (498)
T KOG2118|consen  246 QEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKG-KSHMAVVR--------N-GHVD  315 (498)
T ss_pred             CcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhh-hceeEEEe--------c-CCcc
Confidence            7655666666666665443 1112223445555578999999999999999999997 89999997        3 5678


Q ss_pred             eeeecHHHHHHHHHhcccccccccc
Q psy4847         164 VGLITLEDVIEELIQAEIMDETDVW  188 (396)
Q Consensus       164 vGIVTleDIiEeli~~eI~DE~D~~  188 (396)
                      +|++|++|+ ++++ .|+.||.|..
T Consensus       316 ~~~~~l~~~-~~~~-~ev~de~d~~  338 (498)
T KOG2118|consen  316 IFVLTLEDL-EEVV-KEVEDEEDKE  338 (498)
T ss_pred             eeeEeccch-hhhc-ceeccccccc
Confidence            999999999 9998 8999999976

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.63  E-value=5.2e-15  Score=153.34  Aligned_cols=158  Identities=16%  Similarity=0.216  Sum_probs=127.9

Q ss_pred             CCCHHHHHHHHHccccccc-cccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHH---cCC
Q psy4847           2 CVHPQGLRSFIRVRDHDVT-TEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMK---SGY   77 (396)
Q Consensus         2 ~~~~~Elk~ll~~~~~~~~-~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~---~g~   77 (396)
                      .++++|+..++++...... .=-+.++++|++.+.++++|.+.+|+++|++  ++.+++.+.++. ++++.+.+   ..+
T Consensus        89 ~l~~dd~~~ll~~l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~~~~~  165 (449)
T TIGR00400        89 EMNLDDVIDLLEEVPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVAKTKE  165 (449)
T ss_pred             cCChhHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcCCCcc
Confidence            4788999999998621110 0115799999999999999999999999995  489999999999 99999875   233


Q ss_pred             c--EEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCC
Q psy4847          78 S--RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEG  155 (396)
Q Consensus        78 s--riPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~  155 (396)
                      +  .+||.+++ ++++|+|+.+||+...++  .+++++|   .++++++++++++.++++.|+++ +.+.++|+      
T Consensus       166 ~~~~v~Vvd~~-~~l~GvV~l~dLl~a~~~--~~v~~im---~~~~~~v~~~~~~~eal~~m~~~-~~~~lpVV------  232 (449)
T TIGR00400       166 DIYTLYVTNES-KHLKGVLSIRDLILAKPE--EILSSIM---RSSVFSIVGVNDQEEVARLIQKY-DFLAVPVV------  232 (449)
T ss_pred             ceeEEEEECCC-CeEEEEEEHHHHhcCCCC--CcHHHHh---CCCCeeECCCCCHHHHHHHHHHc-CCCEEeEE------
Confidence            3  45555544 789999999999865443  3667766   46788899999999999999984 77778888      


Q ss_pred             CCCCCCceeeeecHHHHHHHHH
Q psy4847         156 EGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       156 ~~De~g~~vGIVTleDIiEeli  177 (396)
                        |++|+++|+||.+|+++.+.
T Consensus       233 --D~~g~lvGiIt~~Dil~~l~  252 (449)
T TIGR00400       233 --DNEGRLVGIVTVDDIIDVIQ  252 (449)
T ss_pred             --cCCCeEEEEEEHHHHHHHHH
Confidence              88999999999999999987

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.56  E-value=5.4e-14  Score=145.83  Aligned_cols=149  Identities=19%  Similarity=0.270  Sum_probs=125.1

Q ss_pred             CCHHHHHHHHHccccccccccCCCCH-----HHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCC
Q psy4847           3 VHPQGLRSFIRVRDHDVTTEFNDLEK-----DEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGY   77 (396)
Q Consensus         3 ~~~~Elk~ll~~~~~~~~~e~~~l~~-----~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~   77 (396)
                      +|++|+..++...     ...|.|.+     +|.+++.+++.+.+     +|.+  ++++++.+.++. ++++.|.++++
T Consensus        45 vTe~ema~~ma~~-----gg~GvI~~n~~~e~q~~~V~~Vk~~~~-----~~~~--~~vtl~~~~tv~-eal~~m~~~~~  111 (450)
T TIGR01302        45 VTESRMAIAMARE-----GGIGVIHRNMSIEEQAEQVKRVKRAEN-----GIIS--DPVTISPETTVA-DVLELMERKGI  111 (450)
T ss_pred             cCHHHHHHHHHhc-----CCCceeecCCCHHHHHHHHhhhccccC-----ceec--CceEeCCCCCHH-HHHHHHHHcCC
Confidence            5899999999886     45677774     89999999987665     4654  478999999999 99999999999


Q ss_pred             cEEEEEeCCC--CcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCC
Q psy4847          78 SRIPVYEDRR--TNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEG  155 (396)
Q Consensus        78 sriPV~~~~~--~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~  155 (396)
                      +++||++++.  ++++|+|+.+||+.... ...++.++|.  ..+++++++++++.++++.|++. +.+.++|+      
T Consensus       112 s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-~~~~V~dvm~--~~~~~~V~~~~sl~eal~~m~~~-~~~~lpVV------  181 (450)
T TIGR01302       112 SGIPVVEDGDMTGKLVGIITKRDIRFVKD-KGKPVSEVMT--REEVITVPEGIDLEEALKVLHEH-RIEKLPVV------  181 (450)
T ss_pred             CEEEEEeCCCCCCeEEEEEEHHHHhhhhc-CCCCHHHhhC--CCCCEEECCCCcHHHHHHHHHHc-CCCeEEEE------
Confidence            9999998753  69999999999976432 2346666653  13899999999999999999995 88999998      


Q ss_pred             CCCCCCceeeeecHHHHHHHH
Q psy4847         156 EGDPFYETVGLITLEDVIEEL  176 (396)
Q Consensus       156 ~~De~g~~vGIVTleDIiEel  176 (396)
                        |++|+++|+||++||++++
T Consensus       182 --De~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       182 --DKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             --cCCCcEEEEEEhHHhhhcc
Confidence              8999999999999999986

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.47  E-value=2.1e-13  Score=128.81  Aligned_cols=126  Identities=19%  Similarity=0.287  Sum_probs=109.4

Q ss_pred             HHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC--ccccchhh
Q psy4847          35 SGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP--DDNTPLKT  112 (396)
Q Consensus        35 ~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~--~~~~~l~~  112 (396)
                      .++..+...+|+++|++.  +.++..+.++. ++...+.+.|+...||+++  ++++|+++..|++.+-.  .-+..+++
T Consensus       164 ~~m~siPk~~V~~~~s~~--~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~~  238 (294)
T COG2524         164 SKMVSIPKEKVKNLMSKK--LITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVSD  238 (294)
T ss_pred             eeeeecCcchhhhhccCC--ceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHHH
Confidence            445567899999999976  89999999999 9999999999999999976  59999999999975432  23346666


Q ss_pred             hhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         113 LCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       113 v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      +|   .+.+++|.+|+.+.+|++.|..+ +....+|+        |.+|+.+||||..||+..|.
T Consensus       239 ~M---~k~vitI~eDe~i~dAir~M~~~-nVGRLlV~--------ds~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         239 YM---RKNVITINEDEDIYDAIRLMNKN-NVGRLLVT--------DSNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             Hh---ccCCceEcCchhHHHHHHHHHhc-CcceEEEE--------ccCCcEEEEEehHHHHHHhh
Confidence            66   58999999999999999999995 77778887        88899999999999999987

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.46  E-value=8.5e-13  Score=126.80  Aligned_cols=156  Identities=20%  Similarity=0.275  Sum_probs=130.8

Q ss_pred             CCCHHHHHHHHHccccccccccCCCCHHHHHHHHHHhc-------ccccccccccccCCCEEEEeCCCChhHHHHHHHHH
Q psy4847           2 CVHPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALE-------LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMK   74 (396)
Q Consensus         2 ~~~~~Elk~ll~~~~~~~~~e~~~l~~~E~~~i~~ale-------l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~   74 (396)
                      .++.+++...++..     +|.-+++++|...+.+-.|       +.+.+..|||++  ||++++.+++++ ++...+.+
T Consensus       202 gfs~~Dld~aL~~~-----~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~  273 (382)
T COG3448         202 GFSSEDLDAALQRL-----GETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQE  273 (382)
T ss_pred             CCCHHHHHHHHHhc-----CceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHH
Confidence            57888888888886     6777888887665544333       467899999996  499999999999 99999999


Q ss_pred             cCCcEEEEEeCCCCcEEEEEEhhhhcccC-C--------ccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceE
Q psy4847          75 SGYSRIPVYEDRRTNIVTMFYIKDLALVD-P--------DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHM  145 (396)
Q Consensus        75 ~g~sriPV~~~~~~~IVGiL~vkDLl~~~-~--------~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~  145 (396)
                      +++..+||+|+. .+++|+++.+||+.-. +        -.+..++.+|   +.++.+|.++++..+++..|..+ ..|.
T Consensus       274 H~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~im---t~~v~tv~pdtpa~~lvp~lad~-g~H~  348 (382)
T COG3448         274 HRIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIM---TTPVVTVRPDTPAVELVPRLADE-GLHA  348 (382)
T ss_pred             cCcccccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccc---cCcceeecCCCcHHHHHHHhhcC-Ccce
Confidence            999999999876 6899999999998521 1        1123567776   47999999999999999999996 8999


Q ss_pred             EEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847         146 AFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ  178 (396)
Q Consensus       146 avV~~~~~~~~~De~g~~vGIVTleDIiEeli~  178 (396)
                      .+|+        |+.|+++||||..|++-++..
T Consensus       349 lpvl--------d~~g~lvGIvsQtDliaal~r  373 (382)
T COG3448         349 LPVL--------DAAGKLVGIVSQTDLIAALYR  373 (382)
T ss_pred             eeEE--------cCCCcEEEEeeHHHHHHHHHH
Confidence            9999        999999999999999998873

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.43  E-value=7.1e-13  Score=129.92  Aligned_cols=155  Identities=22%  Similarity=0.276  Sum_probs=129.6

Q ss_pred             HHHHHHHHHcccccc-ccccCCCCHHHHHHHHHHhcc-----cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCc
Q psy4847           5 PQGLRSFIRVRDHDV-TTEFNDLEKDEVNIISGALEL-----RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS   78 (396)
Q Consensus         5 ~~Elk~ll~~~~~~~-~~e~~~l~~~E~~~i~~alel-----~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~s   78 (396)
                      .+|...+..+.++.+ ...|..++  -.+||+.|+.-     .=.+|.|||+|..+...+..++++. +..+...+.||+
T Consensus       146 s~evi~lAne~~lPvlstsYDTFT--VAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~s  222 (432)
T COG4109         146 SDEVIKLANEKGLPVLSTSYDTFT--VATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHS  222 (432)
T ss_pred             cHHHHHhhcccCCceEEeccccee--HHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCC
Confidence            356666777766555 25555554  46888888742     2368999999999999999999999 899999999999


Q ss_pred             EEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCC
Q psy4847          79 RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGD  158 (396)
Q Consensus        79 riPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~D  158 (396)
                      ||||++.. .+++|+++.||++..++.  +++..+|   .+++.+|.+.+++..+...|.-. ...|.||+        |
T Consensus       223 RfPVvn~~-~kvvGvVt~rDv~~~~~~--t~ieKVM---tknp~tv~~~tsVAsvaq~MiwE-~iem~PVv--------~  287 (432)
T COG4109         223 RFPVVNRS-MKVVGVVTMRDVLDKKPS--TTIEKVM---TKNPITVRAKTSVASVAQMMIWE-GIEMLPVV--------D  287 (432)
T ss_pred             ccceeccc-ceEEEEEEehhhhcCCCC--ccHHHHh---ccCCeeecccchHHHHHHHHHhc-cceeeeEE--------c
Confidence            99999876 689999999999876654  3667666   58889999999999999999984 89999999        8


Q ss_pred             CCCceeeeecHHHHHHHHH
Q psy4847         159 PFYETVGLITLEDVIEELI  177 (396)
Q Consensus       159 e~g~~vGIVTleDIiEeli  177 (396)
                      ++..++||||+.|+++.+-
T Consensus       288 ~n~~llGiitR~dvlk~lq  306 (432)
T COG4109         288 SNNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             CCceEEEEEEHHHHHHHHH
Confidence            8999999999999999985

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.37  E-value=4.3e-12  Score=112.23  Aligned_cols=157  Identities=21%  Similarity=0.261  Sum_probs=121.8

Q ss_pred             CCCCHHHHHHHHHccccccc-cccCCCCHH--HHHHHHHHhcc---cccccccccccCCCEEEEeCCCChhHHHHHHHHH
Q psy4847           1 MCVHPQGLRSFIRVRDHDVT-TEFNDLEKD--EVNIISGALEL---RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMK   74 (396)
Q Consensus         1 ~~~~~~Elk~ll~~~~~~~~-~e~~~l~~~--E~~~i~~alel---~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~   74 (396)
                      +.+|.+||......+..-++ -|.|.+++.  -.+.|-.+|+=   ...+++.||+.  +++.+.+++++. +++..|.+
T Consensus        17 LGitQ~dLA~~aGVSQ~~IArlE~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~s--pvv~v~pdDsi~-~vv~lM~~   93 (187)
T COG3620          17 LGITQKDLARRAGVSQPYIARLEAGKVDPRLSTVKRILEALEEAEKTRITAKTIMHS--PVVSVSPDDSIS-DVVNLMRD   93 (187)
T ss_pred             cCCCHHHHHHHcCccHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcceEeHhhhccC--CeeEECchhhHH-HHHHHHHH
Confidence            46788888887777665555 677888875  34455555543   24678999985  499999999999 99999999


Q ss_pred             cCCcEEEEEeCCCCcEEEEEEhhhhcccCCc--c---ccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEE
Q psy4847          75 SGYSRIPVYEDRRTNIVTMFYIKDLALVDPD--D---NTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVH  149 (396)
Q Consensus        75 ~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~--~---~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~  149 (396)
                      +|||.+||+++  |++||-|+..++....-+  +   ...++++|   ..+.+.|.+++++..+-..+..+   +.++|+
T Consensus        94 ~g~SQlPVi~~--~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM---~e~fP~Vs~~~~l~vI~~LL~~~---~AVlV~  165 (187)
T COG3620          94 KGISQLPVIEE--DKVVGSITENDIVRALLEGMESIRSLRVREVM---GEPFPTVSPDESLNVISQLLEEH---PAVLVV  165 (187)
T ss_pred             cCCccCceeeC--CeeeeeecHHHHHHHHhccccchhhhhHHHHh---cCCCCcCCCCCCHHHHHHHHhhC---CeEEEE
Confidence            99999999987  789999999999643211  2   23455665   58999999999999998888763   445555


Q ss_pred             EeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         150 RVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       150 ~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                               +.|+++||||..||+..+-
T Consensus       166 ---------e~G~~vGIITk~DI~k~~~  184 (187)
T COG3620         166 ---------ENGKVVGIITKADIMKLLA  184 (187)
T ss_pred             ---------eCCceEEEEeHHHHHHHHh
Confidence                     5799999999999998875

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.37  E-value=1.3e-11  Score=129.34  Aligned_cols=149  Identities=17%  Similarity=0.200  Sum_probs=121.8

Q ss_pred             CCHHHHHHHHHccccccccccCCCC-----HHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCC
Q psy4847           3 VHPQGLRSFIRVRDHDVTTEFNDLE-----KDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGY   77 (396)
Q Consensus         3 ~~~~Elk~ll~~~~~~~~~e~~~l~-----~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~   77 (396)
                      .|++||...+...     ..-|.|.     +++.+++..+..     ++++|.+  ++.+++.+.++. ++++.|.++++
T Consensus        52 vT~~ela~ava~~-----GglG~i~~~~~~e~~~~~I~~vk~-----~~dim~~--~~v~i~~~~tv~-ea~~~m~~~~~  118 (486)
T PRK05567         52 VTEARMAIAMARE-----GGIGVIHKNMSIEEQAEEVRKVKR-----SESGVVT--DPVTVTPDTTLA-EALALMARYGI  118 (486)
T ss_pred             cCHHHHHHHHHhC-----CCCCEecCCCCHHHHHHHHHHhhh-----hhhcccC--CCeEeCCCCCHH-HHHHHHHHhCC
Confidence            5788999888775     4445555     467788887755     5678874  488999999999 99999999999


Q ss_pred             cEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCC
Q psy4847          78 SRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEG  157 (396)
Q Consensus        78 sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~  157 (396)
                      +++||++++ ++++|+|+.+||..... ...++.++|.  .++++++++++++.+++..|.+. +.+.++|+        
T Consensus       119 ~~lpVvd~~-g~lvGiVt~~DL~~~~~-~~~~V~dim~--~~~~v~v~~~~sl~eal~~m~~~-~~~~lpVV--------  185 (486)
T PRK05567        119 SGVPVVDEN-GKLVGIITNRDVRFETD-LSQPVSEVMT--KERLVTVPEGTTLEEALELLHEH-RIEKLPVV--------  185 (486)
T ss_pred             CEEEEEccC-CEEEEEEEHHHhhhccc-CCCcHHHHcC--CCCCEEECCCCCHHHHHHHHHHc-CCCEEEEE--------
Confidence            999999864 89999999999975432 2345666653  26889999999999999999995 78888888        


Q ss_pred             CCCCceeeeecHHHHHHHHH
Q psy4847         158 DPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       158 De~g~~vGIVTleDIiEeli  177 (396)
                      |++|+++|+||.+||++.+.
T Consensus       186 De~g~lvGiIT~~DLl~~~~  205 (486)
T PRK05567        186 DDNGRLKGLITVKDIEKAEE  205 (486)
T ss_pred             cCCCcEEEEEEhHHhhhhhh
Confidence            88999999999999999874

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=7.9e-12  Score=104.80  Aligned_cols=110  Identities=15%  Similarity=0.215  Sum_probs=87.2

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc--ccchhhhhhh------hcCCceEEc
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD--NTPLKTLCQF------YQNSCYFVF  125 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~--~~~l~~v~~~------~~~~v~~V~  125 (396)
                      ++.+++.+.++. ++++.|.+++++++||++++ ++++|+++.+||+......  .....++.++      +..++.++.
T Consensus         2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   79 (120)
T cd04641           2 NIATARPDTPLI-DVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS   79 (120)
T ss_pred             CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence            467899999999 99999999999999999764 8999999999997532111  1111222222      224578999


Q ss_pred             CCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         126 EDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       126 ~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +++++.++++.|.+. +.+.++|+        |++|+++|+||..||++
T Consensus        80 ~~~~l~~~~~~m~~~-~~~~l~Vv--------d~~~~~~Givt~~di~~  119 (120)
T cd04641          80 PDDCLRTIFDLIVKA-RVHRLVVV--------DENKRVEGIISLSDILQ  119 (120)
T ss_pred             CCCcHHHHHHHHHhc-CccEEEEE--------CCCCCEEEEEEHHHhhc
Confidence            999999999999995 78888888        77789999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.1e-11  Score=101.61  Aligned_cols=106  Identities=22%  Similarity=0.290  Sum_probs=86.1

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc-----ccchhhhhhhhcCCceEEcCCC
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD-----NTPLKTLCQFYQNSCYFVFEDT  128 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~-----~~~l~~v~~~~~~~v~~V~~dt  128 (396)
                      ++..++.+.++. ++++.+.+.+++++||++++ ++++|+++.+||+......     ..++.++   +.+++.+++++.
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~   76 (113)
T cd04623           2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEI---MTRNVITVTPDD   76 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHh---cCCCcEEECCCC
Confidence            467789999999 99999999999999999765 7899999999997432211     2244444   457889999999


Q ss_pred             CHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         129 TLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       129 ~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      ++.++++.|.+. +.+.++|+        ++ |+++|+||.+||++
T Consensus        77 ~~~~~l~~~~~~-~~~~~~Vv--------~~-~~~~Gvit~~di~~  112 (113)
T cd04623          77 TVDEAMALMTER-RFRHLPVV--------DG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             cHHHHHHHHHHc-CCCEeEEE--------eC-CEEEEEEEHHHhhc
Confidence            999999999985 66666776        55 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=9.7e-12  Score=102.35  Aligned_cols=106  Identities=19%  Similarity=0.302  Sum_probs=87.3

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc---ccchhhhhhhhcCCceEEcCCCCH
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD---NTPLKTLCQFYQNSCYFVFEDTTL  130 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~---~~~l~~v~~~~~~~v~~V~~dt~L  130 (396)
                      ++..++.+.++. ++++.|.+.+++++||++++ ++++|+++.+||+......   ..++.++   |.+++.++.+++++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~---~~~~~~~v~~~~~l   76 (111)
T cd04626           2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNI---VSQDVFYVNEEDTI   76 (111)
T ss_pred             CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcccccCcHHHH---hcCCcEEEcCCCcH
Confidence            356789999999 99999999999999999765 7899999999997543321   1244544   45788999999999


Q ss_pred             HHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         131 DVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       131 ~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      .+++..|.+. ..+.++|+        |+ |+++|+||..||++
T Consensus        77 ~~~~~~~~~~-~~~~~~Vv--------~~-~~~~G~it~~di~~  110 (111)
T cd04626          77 DEALDIMREK-QIGRLPVV--------DD-NKLIGVVRTKDILD  110 (111)
T ss_pred             HHHHHHHHHc-CCCeeeEe--------EC-CEEEEEEEhHHhcc
Confidence            9999999994 77877787        66 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.33  E-value=1.6e-11  Score=100.79  Aligned_cols=107  Identities=19%  Similarity=0.275  Sum_probs=88.3

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHH
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVL  133 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~  133 (396)
                      ++.+++.+.++. ++++.+.+.+++++||++++ ++++|+++.+||+........++.+++   .+++.++.+++++.++
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~---~~~~~~v~~~~~l~~~   77 (110)
T cd04605           3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIM---TRNVITATPDEPIDVA   77 (110)
T ss_pred             CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCccCHHHhc---CCCCeEECCCCcHHHH
Confidence            467889999999 99999999999999999765 899999999999753222223455554   4788999999999999


Q ss_pred             HHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         134 LKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       134 L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      ++.|.+. +.+.++|+        ++.|+++|+||..||+.
T Consensus        78 ~~~~~~~-~~~~~~Vv--------~~~~~~~G~v~~~di~~  109 (110)
T cd04605          78 ARKMERH-NISALPVV--------DAENRVIGIITSEDISK  109 (110)
T ss_pred             HHHHHHh-CCCEEeEE--------CCCCcEEEEEEHHHhhh
Confidence            9999985 66777777        77799999999999964

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG2118|consensus

Probab=99.32  E-value=7.7e-14  Score=145.75  Aligned_cols=347  Identities=25%  Similarity=0.252  Sum_probs=260.5

Q ss_pred             HHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEe-CCCCcEEEEEEhhhhcccCCccccch
Q psy4847          32 NIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYE-DRRTNIVTMFYIKDLALVDPDDNTPL  110 (396)
Q Consensus        32 ~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~-~~~~~IVGiL~vkDLl~~~~~~~~~l  110 (396)
                      ....+++....+++.+++++...++++-..+.+.|-+...+.+.++.++||+. ...++|+=-...++..+..+...+++
T Consensus        57 ~~~~a~i~~~~k~~~~lL~tlll~n~~~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~  136 (498)
T KOG2118|consen   57 KLIAAAIFPVRKNLHDLLVTLLLCNSIATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPL  136 (498)
T ss_pred             hhhhhhhcccccccceeeehheehhhhccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceeh
Confidence            36778888889999999999887777766554665566667778999999996 34567766666666666777777888


Q ss_pred             hhhhhhhcCCceEEcC--CCCHHHHHHHHHhcCCceEEEEEEeCCCCC-CCCCCceeeeecHHHHHHHHHhccccccccc
Q psy4847         111 KTLCQFYQNSCYFVFE--DTTLDVLLKQFKEGIKGHMAFVHRVNNEGE-GDPFYETVGLITLEDVIEELIQAEIMDETDV  187 (396)
Q Consensus       111 ~~v~~~~~~~v~~V~~--dt~L~~~L~~f~~~~~~h~avV~~~~~~~~-~De~g~~vGIVTleDIiEeli~~eI~DE~D~  187 (396)
                      ..+..|+..|+.+...  |+-+...+..|.++ ..+.++|..++++++ ||......+||+.++.+.++..+++.++.+.
T Consensus       137 ~~i~~~l~~PI~~p~~~~d~~lg~~~~~~~~~-~~l~~lv~~~~~e~~~g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~  215 (498)
T KOG2118|consen  137 VRILSFLCLPIAYPFSKLDTALGLNLGEFLKR-ASLLALVQLVGNEAGKGDLTYDELTIITGALELTEKLVGEVMTPIED  215 (498)
T ss_pred             HHHHHHHhhhhheehhhhhhhhccccccchhh-HHHHHHHHHHhcccccCcccchhhhHhhhhHHHHHHHHHHhccchhh
Confidence            8999999999999888  88999999999885 889999998899988 9999999999999999999999999999988


Q ss_pred             ccccc--cccccccCCCCCCccccchhccccccccccCchhhHHHHHHhhcccc------cHHHHHHHHhcCCCCC----
Q psy4847         188 WTDNQ--HKTKRHKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNFY------VGSLLDRITQKGTSQQ----  255 (396)
Q Consensus       188 ~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~q~~la~~~~Ls~~~~------~e~vL~~Ll~~~~v~~----  255 (396)
                      +-+-.  .+..+.......+.+|+.+--...+.+.++++++..+.+.|+...+.      ++..++++.+.+..-+    
T Consensus       216 ~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~  295 (498)
T KOG2118|consen  216 VFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDL  295 (498)
T ss_pred             heeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHH
Confidence            76521  11111111223356677765555666778999999999999954443      5667778887775433    


Q ss_pred             -----CCccccccccCcccceEEEEEee------EEEEEEcCCcceeecCCccchhhhhccccc--ccC----CCCCCCC
Q psy4847         256 -----KPTFKSLKKRNKPVDYFVLILEG------RAEVVVGKENLVYEAGPFSYFGCQALTQNI--GIA----ESPTNNS  318 (396)
Q Consensus       256 -----~~~~~~LY~~g~~~d~f~LIL~G------rv~V~~G~e~~~~E~gpfs~~G~~aL~~~~--~~~----~~~~~~~  318 (396)
                           ..+..-+|.++.+.++|++.|+|      ++++..+++++.||.|+|++.+..++....  .+.    +++...+
T Consensus       296 l~~~~~~~~H~~~v~~~~~~~~~~~l~~~~~~~~ev~de~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  375 (498)
T KOG2118|consen  296 LNEFQKGKSHMAVVRNGHVDIFVLTLEDLEEVVKEVEDEEDKEEIKFETGIFTLRGIGDLDAGAVTDIDQLGERSPIKER  375 (498)
T ss_pred             HHHHhhhhceeEEEecCCcceeeEeccchhhhcceeccccccccchhcccchhhcccccccccccchhhhhccccccccc
Confidence                 22334589999999999999999      999999999999999999999999998632  111    1111112


Q ss_pred             Cccc--ccCCCcc------ccc--c---cccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHhhhhhccCCc
Q psy4847         319 SAAQ--AYGGSLQ------SVN--L---DSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLMEKSKKSE  379 (396)
Q Consensus       319 ~~~~--~~~~s~~------~~~--~---~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as~~~~~~~~~  379 (396)
                      ++..  +..++..      ...  .   .......|.|||+.+++.|+|+.+++|++|++|+.|+.|++.++++
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  449 (498)
T KOG2118|consen  376 SPRSSESLLDSRKSAFEDLAELGEIGHSVLTLESVIEPDESERILSDLQLVKITRQQYRNALLASLMESLPQSP  449 (498)
T ss_pred             CCCCCccccccccccccccccccccCccceehhhhhccccchhhhccccceechhhhhhhHhhhhhhccCCCCC
Confidence            2210  0001100      000  0   0112247999999999999999999999999999999999998876

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.32  E-value=2.2e-11  Score=101.00  Aligned_cols=107  Identities=19%  Similarity=0.273  Sum_probs=88.4

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc--ccchhhhhhhhcCCceEEcCCCCHH
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD--NTPLKTLCQFYQNSCYFVFEDTTLD  131 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~--~~~l~~v~~~~~~~v~~V~~dt~L~  131 (396)
                      ++.+++.+.++. ++++.|.+.+++++||++++ ++++|+|+.+||......+  ..++.++|   ..++..+.+++++.
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~---~~~~~~v~~~~~l~   76 (111)
T cd04603           2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVY---IVPVPIVYCDSKVT   76 (111)
T ss_pred             ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhccccccccChhhee---ecCCcEECCCCcHH
Confidence            356889999999 99999999999999999765 7899999999998643322  23566654   47788999999999


Q ss_pred             HHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         132 VLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       132 ~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +++..|.+. +.+.++|+        |..|+++|+||..||++
T Consensus        77 ~al~~m~~~-~~~~lpVv--------d~~~~~~Giit~~di~~  110 (111)
T cd04603          77 DLLRIFRET-EPPVVAVV--------DKEGKLVGTIYERELLR  110 (111)
T ss_pred             HHHHHHHHc-CCCeEEEE--------cCCCeEEEEEEhHHhhc
Confidence            999999995 77777777        77789999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.32  E-value=2.3e-11  Score=99.98  Aligned_cols=106  Identities=23%  Similarity=0.265  Sum_probs=89.9

Q ss_pred             CCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHH
Q psy4847          53 EDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDV  132 (396)
Q Consensus        53 ~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~  132 (396)
                      .++.+++.++++. ++...+.+.+++++||++++ +.++|+++.+||+...+  ..++.+++   ..++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~--~~~v~~~~---~~~~~~v~~~~~l~~   74 (108)
T cd04596           2 EDTGYLTTTDTVK-DWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKDP--DTTIEKVM---TKNPITVNPKTSVAS   74 (108)
T ss_pred             CccEEeCCCCCHH-HHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhcccc--cccHHHHh---cCCCeEECCCCCHHH
Confidence            3577899999999 99999999999999999764 78999999999986433  23566665   467889999999999


Q ss_pred             HHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         133 LLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       133 ~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +++.|.+. +.+.++|+        |+.|+++|+||..||++
T Consensus        75 ~~~~~~~~-~~~~~~Vv--------~~~~~~~G~it~~di~~  107 (108)
T cd04596          75 VAHMMIWE-GIEMLPVV--------DDNKKLLGIISRQDVLK  107 (108)
T ss_pred             HHHHHHHc-CCCeeeEE--------cCCCCEEEEEEHHHhhc
Confidence            99999985 67888887        77899999999999985

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=2.6e-11  Score=99.81  Aligned_cols=107  Identities=17%  Similarity=0.203  Sum_probs=87.3

Q ss_pred             EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc---cccchhhhhhhhcCCceEEcCCCCHH
Q psy4847          55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD---DNTPLKTLCQFYQNSCYFVFEDTTLD  131 (396)
Q Consensus        55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~---~~~~l~~v~~~~~~~v~~V~~dt~L~  131 (396)
                      +..++.+.++. ++.+.+.+.++.++||++++ ++++|+++.+|++.....   ...++.+++   .++++.+.+++++.
T Consensus         3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~---~~~~~~v~~~~~~~   77 (112)
T cd04624           3 VVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIM---TRDLVTVDPDEPVA   77 (112)
T ss_pred             CeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCCCccCHHHhc---cCCCEEECCCCcHH
Confidence            45788999999 99999999999999999876 799999999999653211   123455544   57889999999999


Q ss_pred             HHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHH
Q psy4847         132 VLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEE  175 (396)
Q Consensus       132 ~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEe  175 (396)
                      ++++.|.+. ..+.++|+        |+.|+++|+||..|++++
T Consensus        78 ~~~~~~~~~-~~~~~~Vv--------~~~g~~~Gilt~~dl~~~  112 (112)
T cd04624          78 EAAKLMRKN-NIRHHLVV--------DKGGELVGVISIRDLVRE  112 (112)
T ss_pred             HHHHHHHHc-CccEEEEE--------cCCCcEEEEEEHHHhccC
Confidence            999999984 66777777        777999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.29  E-value=3.2e-11  Score=101.04  Aligned_cols=107  Identities=22%  Similarity=0.285  Sum_probs=88.1

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc--------------ccchhhhhhhhcC
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD--------------NTPLKTLCQFYQN  119 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~--------------~~~l~~v~~~~~~  119 (396)
                      ++..++.+.++. ++.+.+.+.+++++||++++ ++++|+|+.+||+......              ..++.++   +.+
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~   77 (124)
T cd04600           3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDI---MSP   77 (124)
T ss_pred             CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHh---ccC
Confidence            467889999999 99999999999999999765 7899999999996432211              1234444   457


Q ss_pred             CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +++++++++++.++++.|.+. +.+.++|+        |+.|+++|+||..|++.
T Consensus        78 ~~~~~~~~~~l~~~~~~~~~~-~~~~~~Vv--------~~~g~~~Gvit~~di~~  123 (124)
T cd04600          78 PVVTVRPDTPIAELVPLLADG-GHHHVPVV--------DEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             CCeeeCCCCcHHHHHHHHHhc-CCCceeEE--------cCCCCEEEEEEhHHhhc
Confidence            889999999999999999985 77877787        77899999999999975

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=3.9e-11  Score=99.49  Aligned_cols=107  Identities=18%  Similarity=0.222  Sum_probs=87.2

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--CC--c-cccchhhhhhhhcCCceEEcCCC
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--DP--D-DNTPLKTLCQFYQNSCYFVFEDT  128 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~~--~-~~~~l~~v~~~~~~~v~~V~~dt  128 (396)
                      ++..++.++++. ++++.|.+.+++.+||++++.++++|+++.+||+..  ..  . ...++.+++   ..+++++++++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~---~~~~~~v~~~~   77 (114)
T cd04630           2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIM---TKPLISVSPDM   77 (114)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHh---cCCCeeECCCC
Confidence            467899999999 999999999999999997643689999999999752  11  1 123455554   57889999999


Q ss_pred             CHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         129 TLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       129 ~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      ++.+++..|.+. +.+.++|+        |+ |+++|+||..||+.
T Consensus        78 ~l~~~~~~~~~~-~~~~~~Vv--------d~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          78 DIKYCARLMERT-NIRRAPVV--------EN-NELIGIISLTDIFL  113 (114)
T ss_pred             CHHHHHHHHHHc-CCCEeeEe--------eC-CEEEEEEEHHHhhc
Confidence            999999999985 77877777        66 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=3.2e-11  Score=102.15  Aligned_cols=110  Identities=18%  Similarity=0.225  Sum_probs=87.8

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcccc----c----------hhhhhhhhcC
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNT----P----------LKTLCQFYQN  119 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~----~----------l~~v~~~~~~  119 (396)
                      ++.+++.++++. +++..|.+.+++.+||++++ ++++|+++.+||+........    +          +...+..+..
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
T cd04642           2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR   79 (126)
T ss_pred             CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence            467899999999 99999999999999999765 899999999999754321110    1          0122233457


Q ss_pred             CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      ++.++++++++.++++.|.+. +.+.++|+        |++|+++|+||..||++
T Consensus        80 ~~~~v~~~~~l~~a~~~~~~~-~~~~l~Vv--------d~~~~~~Giit~~dil~  125 (126)
T cd04642          80 PLITCTPSSTLKEVITKLVAN-KVHRVWVV--------DEEGKPIGVITLTDIIS  125 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHh-CCcEEEEE--------CCCCCEEEEEEHHHHhc
Confidence            889999999999999999985 67777777        77799999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.28  E-value=3.3e-11  Score=99.96  Aligned_cols=107  Identities=19%  Similarity=0.163  Sum_probs=87.0

Q ss_pred             EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc----cccchhhhhhhhcCCceEEcCCCCH
Q psy4847          55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD----DNTPLKTLCQFYQNSCYFVFEDTTL  130 (396)
Q Consensus        55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~----~~~~l~~v~~~~~~~v~~V~~dt~L  130 (396)
                      +..++.++++. ++++.|.+.+++++||++++ ++++|+++.+||+.....    ...++.++   +.++++++.+++++
T Consensus         3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~l   77 (115)
T cd04593           3 PPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEV---ATPPLLTVHPDEPL   77 (115)
T ss_pred             CcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHh---ccCCceEECCCCCH
Confidence            45788999999 99999999999999999765 799999999999753221    11234444   45788999999999


Q ss_pred             HHHHHHHHhcCCceEEEEEEeCCCCCCCCC--CceeeeecHHHHHHH
Q psy4847         131 DVLLKQFKEGIKGHMAFVHRVNNEGEGDPF--YETVGLITLEDVIEE  175 (396)
Q Consensus       131 ~~~L~~f~~~~~~h~avV~~~~~~~~~De~--g~~vGIVTleDIiEe  175 (396)
                      .+++..|.+. +.+.++|+        |+.  |+++|+||..||+++
T Consensus        78 ~~~l~~~~~~-~~~~~~Vv--------d~~~~~~~~Gvit~~di~~~  115 (115)
T cd04593          78 AHALDRMASR-GLRQLPVV--------DRGNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             HHHHHHHHHc-CCceeeEE--------eCCCCCeEEEEEEhHHhhcC
Confidence            9999999995 77777777        665  799999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.27  E-value=3.8e-11  Score=98.66  Aligned_cols=108  Identities=39%  Similarity=0.576  Sum_probs=87.9

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccc--cchhhhhhhhcCCceEEcCCCCHH
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDN--TPLKTLCQFYQNSCYFVFEDTTLD  131 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~--~~l~~v~~~~~~~v~~V~~dt~L~  131 (396)
                      ++..++.++++. ++++.|.+.+++.+||++++.++++|+++.+||+.....+.  .++..+    .+++.++.+++++.
T Consensus         2 ~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~----~~~~~~v~~~~~l~   76 (111)
T cd04590           2 DIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL----LRPPLFVPESTPLD   76 (111)
T ss_pred             ceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH----hcCCeecCCCCcHH
Confidence            477899999999 99999999999999999764368999999999975432211  234433    25788999999999


Q ss_pred             HHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHH
Q psy4847         132 VLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEE  175 (396)
Q Consensus       132 ~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEe  175 (396)
                      ++++.|.+. +.+.++|+        |+.|+++|+||..|+++|
T Consensus        77 ~~~~~~~~~-~~~~~~Vv--------~~~~~~~Gvit~~di~~~  111 (111)
T cd04590          77 DLLEEMRKE-RSHMAIVV--------DEYGGTAGLVTLEDILEE  111 (111)
T ss_pred             HHHHHHHhc-CCcEEEEE--------ECCCCEEEEeEHHHhhcC
Confidence            999999995 77888887        777899999999999864

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=5.5e-11  Score=97.42  Aligned_cols=95  Identities=16%  Similarity=0.243  Sum_probs=81.6

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHH
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVL  133 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~  133 (396)
                      +++++++++++. ++.+.|.+.+++.+||++++.++++|+++.+|++....                +.++.+++++.++
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~----------------~~~v~~~~~l~~a   64 (98)
T cd04618           2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR----------------LVSIHPERSLFDA   64 (98)
T ss_pred             eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee----------------eEEeCCCCcHHHH
Confidence            478899999999 99999999999999999864478999999999974211                6789999999999


Q ss_pred             HHHHHhcCCceEEEEEEeCCCCCCCCC-CceeeeecHHHHHH
Q psy4847         134 LKQFKEGIKGHMAFVHRVNNEGEGDPF-YETVGLITLEDVIE  174 (396)
Q Consensus       134 L~~f~~~~~~h~avV~~~~~~~~~De~-g~~vGIVTleDIiE  174 (396)
                      ++.|.++ +.+.++|+        |+. |+++|+||..||+.
T Consensus        65 ~~~m~~~-~~~~lpVv--------d~~~~~~~giit~~d~~~   97 (98)
T cd04618          65 ALLLLKN-KIHRLPVI--------DPSTGTGLYILTSRRILK   97 (98)
T ss_pred             HHHHHHC-CCCEeeEE--------ECCCCCceEEeehhhhhc
Confidence            9999985 67777787        665 89999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.26  E-value=2.7e-11  Score=119.83  Aligned_cols=120  Identities=16%  Similarity=0.132  Sum_probs=98.7

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--C-Cccccchhhhhhhhc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--D-PDDNTPLKTLCQFYQ  118 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~-~~~~~~l~~v~~~~~  118 (396)
                      ..+|+++|++..++..+++++++. ++++.|.+++...+||++++ ++++|+|+.+||...  . .....++.++|   .
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~~~~~v~~im---~  270 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGALTTPVNEAM---T  270 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCCcCCcHHHhc---C
Confidence            578999998754478999999999 99999998999999999865 799999999998642  1 11233566665   4


Q ss_pred             CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHH
Q psy4847         119 NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEE  175 (396)
Q Consensus       119 ~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEe  175 (396)
                      ++++++.+++++.++++.|.+. +...++|+        |+.|+++|+||..||+.+
T Consensus       271 ~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        271 RGGTTLQAQSRAIDAKEILMKR-KITAAPVV--------DENGKLTGAINLQDFYQA  318 (321)
T ss_pred             CCCEEECCCCCHHHHHHHHHHc-CCCEEEEE--------cCCCeEEEEEEHHHHHhc
Confidence            7888999999999999999985 67777777        777899999999999864

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=5.5e-11  Score=99.73  Aligned_cols=108  Identities=18%  Similarity=0.268  Sum_probs=87.9

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc---------------ccchhhhhhhhc
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD---------------NTPLKTLCQFYQ  118 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~---------------~~~l~~v~~~~~  118 (396)
                      ++..++.+.++. ++++.+.+.++..+||++++.++++|+|+.+||+......               ..++.++   +.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~   77 (125)
T cd04631           2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSI---MT   77 (125)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHH---hc
Confidence            356789999999 9999999999999999976447899999999997432111               1234444   45


Q ss_pred             CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         119 NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       119 ~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      ++++++++++++.++++.|.+. +.+.++|+        |++|+++|+||..||++
T Consensus        78 ~~~~~v~~~~~l~~~~~~~~~~-~~~~~~V~--------~~~~~~~Gvit~~di~~  124 (125)
T cd04631          78 RNVITITPDDSIKDAAELMLEK-RVGGLPVV--------DDDGKLVGIVTERDLLK  124 (125)
T ss_pred             CCceEeCCCCcHHHHHHHHHHc-CCceEEEE--------cCCCcEEEEEEHHHhhc
Confidence            7899999999999999999995 77778887        77789999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.25  E-value=9.1e-11  Score=96.20  Aligned_cols=106  Identities=20%  Similarity=0.219  Sum_probs=87.1

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc--ccchhhhhhhhcCCceEEcCCCCHH
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD--NTPLKTLCQFYQNSCYFVFEDTTLD  131 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~--~~~l~~v~~~~~~~v~~V~~dt~L~  131 (396)
                      ++..++.++++. ++.+.|.+.+++++||+++  ++++|+++.+||+......  ..++.++   +.+++.+|+++.++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~---~~~~~~~v~~~~~~~   75 (110)
T cd04588           2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDV---MTKDVITIDEDEQLY   75 (110)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHH---hcCCceEECCCCCHH
Confidence            367788999999 9999999999999999976  7899999999998643221  1244444   457889999999999


Q ss_pred             HHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         132 VLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       132 ~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      ++++.|.+. ..+.++|+        |+.|+++|+||..|+++
T Consensus        76 ~~~~~~~~~-~~~~~~V~--------~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          76 DAIRLMNKH-NVGRLIVT--------DDEGRPVGIITRTDILR  109 (110)
T ss_pred             HHHHHHHhc-CCCEEEEE--------CCCCCEEEEEEhHHhhc
Confidence            999999985 67777777        77789999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.25  E-value=3.6e-11  Score=119.32  Aligned_cols=120  Identities=17%  Similarity=0.145  Sum_probs=97.5

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc----cccchhhhhhh
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD----DNTPLKTLCQF  116 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~----~~~~l~~v~~~  116 (396)
                      ...+|+|+|++..++..+++++++. ++++.|.++++..+||++++ ++++|+|+.+|+..+...    ...++.++|  
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im--  275 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVM--  275 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhc--
Confidence            6678999999744688999999999 99999999998777887654 799999999998743211    123566665  


Q ss_pred             hcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHH
Q psy4847         117 YQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEE  175 (396)
Q Consensus       117 ~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEe  175 (396)
                       .+++++|.+++++.++++.|.+. +.+.++|+        | .|+++||||..||+..
T Consensus       276 -~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        276 -TPGGIRVRPGILAVDALNLMQSR-HITSVLVA--------D-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             -CCCCEEECCCCCHHHHHHHHHHC-CCcEEEEe--------e-CCEEEEEEEhHHhHhc
Confidence             57889999999999999999985 67777776        4 4789999999999864

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.25  E-value=7.1e-11  Score=121.87  Aligned_cols=156  Identities=19%  Similarity=0.287  Sum_probs=126.5

Q ss_pred             CHHHHHHHHHccccccc-cccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCC-----
Q psy4847           4 HPQGLRSFIRVRDHDVT-TEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGY-----   77 (396)
Q Consensus         4 ~~~Elk~ll~~~~~~~~-~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~-----   77 (396)
                      +.++...++++...+.- ..-..++++++..+..++.+.+.+++.+||..  +++++.+.++. +++..+.+.+.     
T Consensus        92 ~~Dd~~~ll~elp~~~~~~lL~~l~~~~r~~v~~~l~y~e~taG~~Mt~e--~v~l~~~~Tv~-~al~~ir~~~~~~e~~  168 (451)
T COG2239          92 DIDDAADLLDELPDEVRDELLSLLDPEERARVRQLLSYPEDTAGRIMTTE--FVTLPEDVTVD-EALDRIRERAEDAETI  168 (451)
T ss_pred             CcHHHHHHHHhCCHHHHHHHHHhCCHHHHHHHHHhcCCChhhhhccceee--eEEeccCcCHH-HHHHHHHHhccccccc
Confidence            34444455554433322 44456899999999999999999999999965  89999999999 99999985542     


Q ss_pred             cEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCC
Q psy4847          78 SRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEG  157 (396)
Q Consensus        78 sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~  157 (396)
                      ..+.|+|.+ ++++|+++.++|+..+|+.  +++++|.   +.+++|.+++...++.+.|++. ..-.++|+        
T Consensus       169 ~~lyVvD~~-~~L~Gvvsl~~Ll~a~~~~--~i~~im~---~~~~~V~~~~dqeevA~~~~~y-dl~a~PVV--------  233 (451)
T COG2239         169 YYLYVVDEK-GKLLGVVSLRDLLTAEPDE--LLKDLME---DDVVSVLADDDQEEVARLFEKY-DLLAVPVV--------  233 (451)
T ss_pred             ceEEEECCc-cceEEEeeHHHHhcCCcHh--HHHHHhc---ccceeecccCCHHHHHHHHHHh-CCeecceE--------
Confidence            344566654 6899999999999887765  7888875   6689999999999999999995 67777777        


Q ss_pred             CCCCceeeeecHHHHHHHHH
Q psy4847         158 DPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       158 De~g~~vGIVTleDIiEeli  177 (396)
                      |+.++++|+||.+||++.|.
T Consensus       234 d~~~~LiG~itiDDiidvi~  253 (451)
T COG2239         234 DEDNRLIGIITIDDIIDVIE  253 (451)
T ss_pred             CCCCceeeeeeHHHHHHHHH
Confidence            99999999999999999875

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=1e-10  Score=97.23  Aligned_cols=106  Identities=12%  Similarity=0.158  Sum_probs=87.3

Q ss_pred             EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC-----CccccchhhhhhhhcCCceEEcCCCC
Q psy4847          55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD-----PDDNTPLKTLCQFYQNSCYFVFEDTT  129 (396)
Q Consensus        55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~-----~~~~~~l~~v~~~~~~~v~~V~~dt~  129 (396)
                      +..++.++++. ++...|.+.++..+||++++ ++++|+++.+|++...     .....++.+++   ..+++++.++++
T Consensus         3 ~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~---~~~~~~v~~~~~   77 (114)
T cd04619           3 LAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVM---TRAVVSCRPGDL   77 (114)
T ss_pred             eEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHh---cCCCeeECCCCC
Confidence            66789999999 99999999999999999765 7899999999987422     11123555554   578889999999


Q ss_pred             HHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         130 LDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       130 L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +.++++.|.+. ..+.++|+        |+.|+++|+||..|+++
T Consensus        78 l~~a~~~m~~~-~~~~lpVv--------d~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          78 LHDVWQVMKQR-GLKNIPVV--------DENARPLGVLNARDALK  113 (114)
T ss_pred             HHHHHHHHHHc-CCCeEEEE--------CCCCcEEEEEEhHhhcc
Confidence            99999999995 67667777        77789999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.24  E-value=1.3e-10  Score=95.16  Aligned_cols=106  Identities=21%  Similarity=0.195  Sum_probs=87.2

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc---cccchhhhhhhhcCCceEEcCCCCH
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD---DNTPLKTLCQFYQNSCYFVFEDTTL  130 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~---~~~~l~~v~~~~~~~v~~V~~dt~L  130 (396)
                      ++.+++.+.++. ++++.|.+.++..+||+++  ++++|+++.+||+.....   ...++.+++   .++++++++++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~l   75 (111)
T cd04611           2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVM---SSPLLTVPADTSL   75 (111)
T ss_pred             CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhc---CCCceEECCCCCH
Confidence            356789999999 9999999889999999976  789999999999753221   223555554   5788999999999


Q ss_pred             HHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         131 DVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       131 ~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      .++++.|.+. +.+.++|+        |+.|+++|+||..||++
T Consensus        76 ~~~l~~~~~~-~~~~~~Vv--------~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          76 YDARQLMREH-GIRHLVVV--------DDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             HHHHHHHHHc-CCeEEEEE--------CCCCcEEEEEEhHHhhc
Confidence            9999999984 67777787        77789999999999975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.24  E-value=9.3e-11  Score=95.19  Aligned_cols=102  Identities=16%  Similarity=0.137  Sum_probs=85.8

Q ss_pred             EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHH
Q psy4847          55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLL  134 (396)
Q Consensus        55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L  134 (396)
                      +..++.++++. ++++.|.+.++..+||+++  ++++|+++.+||+.....  .++.+++   ..++.++++++++.+++
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~Giv~~~~l~~~~~~--~~~~~~~---~~~~~~v~~~~~l~~~~   74 (105)
T cd04599           3 PITIDPLDSVG-RAARLMEKHRIGGLPVVED--GKLVGIITSRDVRRAHPN--RLVADAM---TREVVTISPEASLLEAK   74 (105)
T ss_pred             CEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEehHHhhccccc--CCHHHHc---cCCCEEECCCCCHHHHH
Confidence            56789999999 9999998899999999973  799999999999875432  3556555   47888999999999999


Q ss_pred             HHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         135 KQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       135 ~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +.|.+. ....++|+        |+ |+++|+||..||+.
T Consensus        75 ~~~~~~-~~~~~~Vv--------~~-~~~~G~it~~~l~~  104 (105)
T cd04599          75 RLMEEK-KIERLPVL--------RE-RKLVGIITKGTIAL  104 (105)
T ss_pred             HHHHHc-CCCEeeEE--------EC-CEEEEEEEHHHhcc
Confidence            999985 67777777        66 89999999999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=9.5e-11  Score=97.88  Aligned_cols=107  Identities=22%  Similarity=0.229  Sum_probs=87.1

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc-------------cccchhhhhhhhcCC
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD-------------DNTPLKTLCQFYQNS  120 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~-------------~~~~l~~v~~~~~~~  120 (396)
                      ++.++..++++. ++.+.|.+.+++++||++++ ++++|+++.+||+.....             ...++.+   ++.++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~   76 (122)
T cd04803           2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE---VMKTD   76 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHH---hhCCC
Confidence            356789999999 99999999999999999765 799999999998743211             1223444   44578


Q ss_pred             ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         121 CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       121 v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +.++++++++.++++.|.+. ..+.++|+        |+.|+++|+||..|+++
T Consensus        77 ~~~v~~~~~~~~~~~~~~~~-~~~~~~Vv--------~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          77 VLTVTPDTPLREAAEIMVEN-KIGCLPVV--------DDKGTLVGIITRSDFLR  121 (122)
T ss_pred             CeEeCCCCcHHHHHHHHHHc-CCCeEEEE--------cCCCCEEEEEEHHHhhc
Confidence            89999999999999999985 67777777        77789999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.24  E-value=7.1e-11  Score=96.97  Aligned_cols=107  Identities=21%  Similarity=0.289  Sum_probs=86.6

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc-c---ccchhhhhhhhcCCceEEcCCCC
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD-D---NTPLKTLCQFYQNSCYFVFEDTT  129 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~-~---~~~l~~v~~~~~~~v~~V~~dt~  129 (396)
                      ++.+++.++++. ++.+.+.+.+++++||++++ ++++|+++.+||+..... .   ..++.++   +.+++.+|+++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~---~~~~~~~v~~~~~   76 (114)
T cd04613           2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDI---MTKPPVVVYPEDS   76 (114)
T ss_pred             CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHh---ccCCCcEEcCCCC
Confidence            366789999999 99999999999999999765 789999999999753211 1   1344444   4578899999999


Q ss_pred             HHHHHHHHHhcCCceEEEEEEeCCCCCCCC-CCceeeeecHHHHHH
Q psy4847         130 LDVLLKQFKEGIKGHMAFVHRVNNEGEGDP-FYETVGLITLEDVIE  174 (396)
Q Consensus       130 L~~~L~~f~~~~~~h~avV~~~~~~~~~De-~g~~vGIVTleDIiE  174 (396)
                      +.++++.|.+. ..+.++|+        |+ .|+++|+||..||+.
T Consensus        77 ~~~~~~~~~~~-~~~~~~Vv--------~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          77 LEDALKKFEDS-DYEQLPVV--------DDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             HHHHHHHHhhC-CccEeeEE--------eCCCCEEEEEEEhHHhhc
Confidence            99999999985 66666676        55 789999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.24  E-value=1.1e-10  Score=95.54  Aligned_cols=108  Identities=19%  Similarity=0.209  Sum_probs=87.2

Q ss_pred             EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHH
Q psy4847          55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLL  134 (396)
Q Consensus        55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L  134 (396)
                      +..++.++++. ++++.|.+.+++++||+++  ++++|+++.+||+............+.+++..+++++.+++++.+++
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   79 (111)
T cd04612           3 VVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDAL   79 (111)
T ss_pred             CEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHHH
Confidence            56789999999 9999999899999999976  78999999999986433221110123344567899999999999999


Q ss_pred             HHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         135 KQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       135 ~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +.|.+. +.+.++|+        |+.|+++|+||..||++
T Consensus        80 ~~~~~~-~~~~~~V~--------~~~~~~~G~it~~di~~  110 (111)
T cd04612          80 KRMAER-DIGRLPVV--------DDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             HHHHhC-CCCeeeEE--------cCCCCEEEEEEHHHhhh
Confidence            999995 77777787        66789999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.22  E-value=1.4e-10  Score=95.86  Aligned_cols=105  Identities=16%  Similarity=0.165  Sum_probs=85.2

Q ss_pred             EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--CCc-cccchhhhhhhhcCCceEEcCCCCHH
Q psy4847          55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--DPD-DNTPLKTLCQFYQNSCYFVFEDTTLD  131 (396)
Q Consensus        55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~~~-~~~~l~~v~~~~~~~v~~V~~dt~L~  131 (396)
                      .+.++.++++. +++..|.+.++..+||++++ ++++|+++.+|++..  ... ...++.+++   ..++..|.+++++.
T Consensus         4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~---~~~~~~v~~~~~l~   78 (113)
T cd04607           4 QLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSLDDPVSEVM---NRNPITAKVGSSRE   78 (113)
T ss_pred             ceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCcCCCHHHhh---cCCCEEEcCCCCHH
Confidence            45789999999 99999988899999999765 789999999998642  111 123455554   47788999999999


Q ss_pred             HHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHH
Q psy4847         132 VLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVI  173 (396)
Q Consensus       132 ~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIi  173 (396)
                      ++++.|.+. ..+.++|+        |+.|+++|+||..||+
T Consensus        79 ~~~~~~~~~-~~~~~~Vv--------~~~~~~~Gvit~~di~  111 (113)
T cd04607          79 EILALMRER-SIRHLPIL--------DEEGRVVGLATLDDLL  111 (113)
T ss_pred             HHHHHHHHC-CCCEEEEE--------CCCCCEEEEEEhHHhc
Confidence            999999995 67777777        7778999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=8.1e-11  Score=100.42  Aligned_cols=109  Identities=22%  Similarity=0.223  Sum_probs=86.1

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc----cc-----------------chhh
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD----NT-----------------PLKT  112 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~----~~-----------------~l~~  112 (396)
                      ++.++..++++. ++++.+.+.+++++||++++ ++++|+++.+||+......    ..                 ...+
T Consensus         2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (132)
T cd04636           2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK   79 (132)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence            356789999999 99999988999999999765 7999999999997432111    00                 0013


Q ss_pred             hhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         113 LCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       113 v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +.+++.++++++.+++++.+++..|.+. ..+.++|+        |+ |+++|+||..|+++
T Consensus        80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~V~--------~~-~~~iGvit~~dl~~  131 (132)
T cd04636          80 VEEIMTKKVITVDEDTTIEDVARIMSKK-NIKRLPVV--------DD-GKLVGIISRGDIIR  131 (132)
T ss_pred             HHHhccCCceEECCCCcHHHHHHHHHHC-CCCeeEEE--------EC-CEEEEEEEHHHhhc
Confidence            4444557889999999999999999985 67777787        66 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=9.9e-11  Score=101.27  Aligned_cols=107  Identities=23%  Similarity=0.228  Sum_probs=86.6

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc---------------------------
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD---------------------------  106 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~---------------------------  106 (396)
                      ++.+++.++++. +++..|.+.+++.+||++++ ++++|+++.+||+......                           
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (135)
T cd04621           2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV   79 (135)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence            467789999999 99999999999999999765 8999999999997532211                           


Q ss_pred             ccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHH
Q psy4847         107 NTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEE  175 (396)
Q Consensus       107 ~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEe  175 (396)
                      ..++.++   +..++++|.+++++.++++.|.++ +.+.++|+        ++ |+++|+||..||+++
T Consensus        80 ~~~v~~~---~~~~~~~v~~~~~l~~~~~~~~~~-~~~~l~Vv--------~~-~~~~Gvit~~di~~~  135 (135)
T cd04621          80 PLVAEDI---MTEEIITVSPNDDVVDAAKLMLEA-NISGLPVV--------DN-DNIVGVITKTDICRE  135 (135)
T ss_pred             cccHHHh---cCCCCeEECCCCCHHHHHHHHHHc-CCCEEEEE--------eC-CEEEEEEEHHHHhhC
Confidence            1234444   457888999999999999999985 67667776        55 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.22  E-value=2.2e-10  Score=93.25  Aligned_cols=104  Identities=21%  Similarity=0.263  Sum_probs=86.5

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHH
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVL  133 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~  133 (396)
                      ++..++.+.++. ++++.|.+.+++++||+++  ++++|+++.+||+...+  ..++.+++   ..++.++++++++.++
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~~--~~~~~~~~---~~~~~~v~~~~~l~~~   74 (107)
T cd04610           3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKDP--DETVEEIM---SKDLVVAVPEMDIMDA   74 (107)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccCc--cccHHHhC---CCCCeEECCCCCHHHH
Confidence            467889999999 9999998888999999975  78999999999986432  22455554   4678899999999999


Q ss_pred             HHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         134 LKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       134 L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      ++.|.+. +.+.++|+        |+.|+++|+||..||++
T Consensus        75 ~~~~~~~-~~~~~~Vv--------~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          75 ARVMFRT-GISKLPVV--------DENNNLVGIITNTDVIR  106 (107)
T ss_pred             HHHHHHh-CCCeEeEE--------CCCCeEEEEEEHHHhhc
Confidence            9999985 66777777        77789999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.22  E-value=1.9e-10  Score=94.02  Aligned_cols=106  Identities=25%  Similarity=0.284  Sum_probs=86.1

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcC-CCCHHH
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFE-DTTLDV  132 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~-dt~L~~  132 (396)
                      ++..++.+.++. ++++.|.+.+++++||++++ ++++|+++.+|++...+ ...++.+++   ..++.++.. ++++.+
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-~~~~v~~~~---~~~~~~~~~~~~~l~~   76 (110)
T cd04601           3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-LDKPVSEVM---TPENLLTTVEGTSLEE   76 (110)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-CCCCHHHhc---ccCceEEecCCCCHHH
Confidence            356788999999 99999999999999999765 79999999999976533 234566655   355566666 999999


Q ss_pred             HHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         133 LLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       133 ~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      ++..|.+. +.+.++|+        |+.|+++|+||..|+++
T Consensus        77 ~~~~~~~~-~~~~~~Vv--------~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          77 ALELLHEH-KIEKLPVV--------DDEGKLKGLITVKDIEK  109 (110)
T ss_pred             HHHHHHHh-CCCeeeEE--------cCCCCEEEEEEhhhhhc
Confidence            99999995 67777777        77789999999999975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.21  E-value=1.1e-10  Score=96.43  Aligned_cols=105  Identities=17%  Similarity=0.258  Sum_probs=84.7

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc---------ccchhhhhhhhcCCceEE
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD---------NTPLKTLCQFYQNSCYFV  124 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~---------~~~l~~v~~~~~~~v~~V  124 (396)
                      ++.+++.++++. ++++.|.+.+++.+||++++ ++++|+++.+|++......         ..++.++   +.+++.++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~v   76 (116)
T cd04643           2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDV---MNTDVPVI   76 (116)
T ss_pred             CcEEECCCCcHH-HHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHH---hcCCCcee
Confidence            477899999999 99999999999999999764 7899999999997532210         2244444   45778999


Q ss_pred             cCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         125 FEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       125 ~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      .+++++.+++..|.+. .  .++|+        |++|+++|+||..|+++
T Consensus        77 ~~~~~l~~a~~~~~~~-~--~~~Vv--------~~~~~~~Gvit~~dil~  115 (116)
T cd04643          77 IDDADIEEILHLLIDQ-P--FLPVV--------DDDGIFIGIITRREILK  115 (116)
T ss_pred             cCCCCHHHHHHHHhcC-C--ceeEE--------eCCCeEEEEEEHHHhhc
Confidence            9999999999999873 3  45666        77789999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.20  E-value=7.5e-11  Score=97.66  Aligned_cols=109  Identities=20%  Similarity=0.209  Sum_probs=85.8

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcC-CcEEEEEeCCCCcEEEEEEhhhhcccCCc--cccchhhhhhhhcCCceEEcCCCCH
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSG-YSRIPVYEDRRTNIVTMFYIKDLALVDPD--DNTPLKTLCQFYQNSCYFVFEDTTL  130 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g-~sriPV~~~~~~~IVGiL~vkDLl~~~~~--~~~~l~~v~~~~~~~v~~V~~dt~L  130 (396)
                      ++..++.++++. ++++.|.+.+ ++.+||++++ ++++|+++.+||+.....  ...++.+++... .+++.+.+++++
T Consensus         2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~-~~~~~v~~~~~l   78 (114)
T cd04801           2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWAQTTVIQVMTPA-AKLVTVLSEESL   78 (114)
T ss_pred             CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhccccchhhhhccc-ccceEECCCCcH
Confidence            366789999999 9998887665 8999999765 789999999999764321  134566665421 235689999999


Q ss_pred             HHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         131 DVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       131 ~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      .++++.|.+. +.+.++|+        |+.|+++|+||..||++
T Consensus        79 ~~a~~~~~~~-~~~~l~Vv--------~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          79 AEVLKLLEEQ-GLDELAVV--------EDSGQVIGLITEADLLR  113 (114)
T ss_pred             HHHHHHHHHC-CCCeeEEE--------cCCCcEEEEEeccceec
Confidence            9999999995 67777777        66789999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.20  E-value=1.3e-10  Score=95.36  Aligned_cols=107  Identities=24%  Similarity=0.311  Sum_probs=86.6

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC--CccccchhhhhhhhcCCceEEcCCCCHH
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD--PDDNTPLKTLCQFYQNSCYFVFEDTTLD  131 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~--~~~~~~l~~v~~~~~~~v~~V~~dt~L~  131 (396)
                      ++..++.++++. ++.+.+.+.++.++||++++ ++++|+++.+|++...  .....++.+++   .++++++++++++.
T Consensus         2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~---~~~~~~i~~~~~~~   76 (111)
T cd04639           2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGPDAPVRGVM---RRDFPTVSPSATLD   76 (111)
T ss_pred             CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCCCCcHHHHh---cCCCcEECCCCcHH
Confidence            356788999999 99999888999999999765 7899999999997431  11223555554   47889999999999


Q ss_pred             HHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         132 VLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       132 ~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      ++++.|.+. ..+.++|+        |+.|+++|+||..|+.+
T Consensus        77 ~~~~~~~~~-~~~~~~Vv--------~~~~~~~G~it~~dl~~  110 (111)
T cd04639          77 AVLRLMQQG-GAPAVPVV--------DGSGRLVGLVTLENVGE  110 (111)
T ss_pred             HHHHHHHhc-CCceeeEE--------cCCCCEEEEEEHHHhhc
Confidence            999999985 66767776        66689999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.20  E-value=1.4e-10  Score=120.93  Aligned_cols=120  Identities=17%  Similarity=0.116  Sum_probs=102.6

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcC
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQN  119 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~  119 (396)
                      ++..++.++|++.  ++++++++++. ++.+.|.+++++.+||++++ ++++|+|+.+||...++.  .++.++|   ..
T Consensus        86 l~~VKv~~iMi~~--pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~~~--~~V~diM---t~  156 (479)
T PRK07807         86 VAWVKSRDLVFDT--PVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVDRF--TQVRDVM---ST  156 (479)
T ss_pred             HhhcccccccccC--CeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCccC--CCHHHhc---cC
Confidence            4466688999854  78999999999 99999999999999999865 789999999999765433  4577666   47


Q ss_pred             CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      +++++++++++.+++..|.+. +.+.++|+        |+.|+++|+||..||+....
T Consensus       157 ~~itV~~d~sL~eAl~lM~~~-~i~~LPVV--------D~~g~lvGIIT~~DIl~~~~  205 (479)
T PRK07807        157 DLVTLPAGTDPREAFDLLEAA-RVKLAPVV--------DADGRLVGVLTRTGALRATI  205 (479)
T ss_pred             CceEECCCCcHHHHHHHHHhc-CCCEEEEE--------cCCCeEEEEEEHHHHHHHhh
Confidence            899999999999999999995 77777887        77789999999999999765

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.20  E-value=1.7e-10  Score=96.40  Aligned_cols=107  Identities=15%  Similarity=0.261  Sum_probs=86.7

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC------c-------cccchhhhhhhhcCC
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP------D-------DNTPLKTLCQFYQNS  120 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~------~-------~~~~l~~v~~~~~~~  120 (396)
                      ++++++.+.++. ++++.|.+.+++.+||++++ ++++|+++.+||+....      .       ...++.++   +..+
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~   76 (122)
T cd04635           2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKI---MSTP   76 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHH---hcCC
Confidence            467889999999 99999998999999999764 89999999999974210      0       12234444   4577


Q ss_pred             ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         121 CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       121 v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +..+++++++.+++..|.+. +.+.++|+        |+.|+++|+||.+|+++
T Consensus        77 ~~~v~~~~~l~~~~~~~~~~-~~~~~~Vv--------d~~g~~~Gvit~~dl~~  121 (122)
T cd04635          77 VYSVTPDDSIATAVELMLEH-DIGRLPVV--------NEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             CeeECCCCCHHHHHHHHHHc-CCCeeeEE--------cCCCcEEEEEEhHHhhc
Confidence            89999999999999999995 67777777        77799999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.20  E-value=1.9e-10  Score=96.79  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=84.5

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC---Cccccchh-------hhhhhhcCCceE
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD---PDDNTPLK-------TLCQFYQNSCYF  123 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~---~~~~~~l~-------~v~~~~~~~v~~  123 (396)
                      ++..++.++++. ++++.|.+.++.++||++++.++++|+++.+||+...   ........       .+...+.+++.+
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (123)
T cd04627           2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS   80 (123)
T ss_pred             CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence            356789999999 9999999899999999976436899999999986421   11000000       111233578889


Q ss_pred             EcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHH
Q psy4847         124 VFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVI  173 (396)
Q Consensus       124 V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIi  173 (396)
                      +.+++++.++++.|.+. +.+.++|+        |++|+++|+||+.||-
T Consensus        81 v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~~~~vGiit~~di~  121 (123)
T cd04627          81 INGDQPLIDALHLMHNE-GISSVAVV--------DNQGNLIGNISVTDVR  121 (123)
T ss_pred             eCCCCCHHHHHHHHHHc-CCceEEEE--------CCCCcEEEEEeHHHhh
Confidence            99999999999999995 77777777        7789999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.20  E-value=2.2e-10  Score=94.05  Aligned_cols=105  Identities=22%  Similarity=0.190  Sum_probs=84.9

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc--cCCc--cccchhhhhhhhcCCceEEcCCCC
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL--VDPD--DNTPLKTLCQFYQNSCYFVFEDTT  129 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~--~~~~--~~~~l~~v~~~~~~~v~~V~~dt~  129 (396)
                      ++..++.+.++. ++.+.|.+.+++++||+++  ++++|+++.+|++.  ....  ...++.++   +.+++++++++++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~---~~~~~~~v~~~~~   75 (111)
T cd04800           2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEV---MTAPPITIPPDAT   75 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHH---hCCCCeEECCCCc
Confidence            356789999999 9999998899999999976  79999999999874  2111  12344444   4578999999999


Q ss_pred             HHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         130 LDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       130 L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +.++++.|.+. ..+.++|+        ++ |+++|+||.+||++
T Consensus        76 l~~~~~~~~~~-~~~~~~Vv--------~~-~~~~Giit~~di~~  110 (111)
T cd04800          76 VFEALLLMLER-GIHHLPVV--------DD-GRLVGVISATDLLR  110 (111)
T ss_pred             HHHHHHHHHHc-CCCeeeEe--------EC-CEEEEEEEHHHhhc
Confidence            99999999995 66666776        55 89999999999974

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.19  E-value=2.3e-10  Score=94.22  Aligned_cols=106  Identities=13%  Similarity=0.208  Sum_probs=85.5

Q ss_pred             EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--CCc--cccchhhhhhhhcCCceEEcCCCCH
Q psy4847          55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--DPD--DNTPLKTLCQFYQNSCYFVFEDTTL  130 (396)
Q Consensus        55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~~~--~~~~l~~v~~~~~~~v~~V~~dt~L  130 (396)
                      ...+..++++. ++++.+.+.++.++||++++ ++++|+++.+||+..  ...  ...++.++   +..++.++.+++++
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~---~~~~~~~v~~~~~l   77 (113)
T cd04615           3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREV---MNSPVITIDANDSI   77 (113)
T ss_pred             CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHh---ccCCceEECCCCcH
Confidence            35678999999 99999999999999999765 789999999999752  211  12345554   45788999999999


Q ss_pred             HHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         131 DVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       131 ~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      .++++.|.+. +.+.++|+        |+.|+++|+||..|+++
T Consensus        78 ~~~~~~~~~~-~~~~~~Vv--------d~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          78 AKARWLMSNN-NISRLPVL--------DDKGKVGGIVTEDDILR  112 (113)
T ss_pred             HHHHHHHHHc-CCCeeeEE--------CCCCeEEEEEEHHHhhc
Confidence            9999999985 66666676        77789999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.19  E-value=1.9e-10  Score=94.62  Aligned_cols=103  Identities=22%  Similarity=0.317  Sum_probs=83.2

Q ss_pred             EeCCCChhHHHHHHHHHcC-----CcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHH
Q psy4847          58 LSYDAILDFETVSEIMKSG-----YSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDV  132 (396)
Q Consensus        58 l~~d~~l~~e~i~~i~~~g-----~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~  132 (396)
                      +..+.++. ++++.|.+++     +..+||++++ ++++|+|+.+|++....  ..++.+++   ..++.++++++++.+
T Consensus         2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~~--~~~v~~~~---~~~~~~i~~~~~~~~   74 (109)
T cd04606           2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLADP--DTPVSDIM---DTDVISVSADDDQEE   74 (109)
T ss_pred             ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCCC--cchHHHHh---CCCCeEEcCCCCHHH
Confidence            45677888 8998888777     4678999765 78999999999986432  23455554   577899999999999


Q ss_pred             HHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHH
Q psy4847         133 LLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL  176 (396)
Q Consensus       133 ~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEel  176 (396)
                      +++.|.+. ..+.++|+        |++|+++|+||..|+++++
T Consensus        75 ~~~~~~~~-~~~~~~Vv--------~~~~~~~Gvit~~dll~~~  109 (109)
T cd04606          75 VARLFEKY-DLLALPVV--------DEEGRLVGIITVDDVIDVI  109 (109)
T ss_pred             HHHHHHHc-CCceeeeE--------CCCCcEEEEEEhHHhhhhC
Confidence            99999985 67777777        7789999999999999763

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.19  E-value=2.1e-10  Score=94.35  Aligned_cols=107  Identities=19%  Similarity=0.214  Sum_probs=85.9

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc----cccchhhhhhhhcCCceEEcCCCC
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD----DNTPLKTLCQFYQNSCYFVFEDTT  129 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~----~~~~l~~v~~~~~~~v~~V~~dt~  129 (396)
                      ++..++.++++. ++++.+.+.+++++||++++ ++++|+|+.++++.....    ...++.++   +..++.+++++++
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~---~~~~~~~v~~~~~   77 (114)
T cd04604           3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADV---MTRNPKTIDPDAL   77 (114)
T ss_pred             cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHh---hccCCeEECCCCc
Confidence            456788999999 99999988899999999765 789999999998643211    11244544   4577889999999


Q ss_pred             HHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         130 LDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       130 L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +.++++.|.+. ..+.++|+        |+.|+++|+||..||+.
T Consensus        78 ~~~~~~~~~~~-~~~~~~Vv--------~~~~~~iG~it~~di~~  113 (114)
T cd04604          78 AAEALELMEEN-KITALPVV--------DDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             HHHHHHHHHHc-CCCEEEEE--------CCCCCEEEEEEHHHhhc
Confidence            99999999985 67777777        76799999999999974

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.18  E-value=3.3e-10  Score=92.41  Aligned_cols=106  Identities=16%  Similarity=0.208  Sum_probs=86.9

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHH
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVL  133 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~  133 (396)
                      ++..++.+.++. +++..|.+.++.++||++++ ++++|+++.+||+.... ...++..++   ...+.++++++++.++
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~-~~~~v~~~~---~~~~~~v~~~~~~~~~   76 (109)
T cd04583           3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYK-EAKSLEDIM---LEDVFTVQPDASLRDV   76 (109)
T ss_pred             CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhh-cCCcHhHhh---cCCceEECCCCcHHHH
Confidence            356788999999 99999999999999999765 78999999999975321 123556555   4678899999999999


Q ss_pred             HHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         134 LKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       134 L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +..|.+. +.+.++|+        |+.|+++|+||.+|++.
T Consensus        77 ~~~~~~~-~~~~~~vv--------~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          77 LGLVLKR-GPKYVPVV--------DEDGKLVGLITRSSLVD  108 (109)
T ss_pred             HHHHHHc-CCceeeEE--------CCCCeEEEEEehHHhhc
Confidence            9999985 66667777        77789999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.17  E-value=4e-10  Score=91.73  Aligned_cols=103  Identities=13%  Similarity=0.026  Sum_probs=85.2

Q ss_pred             EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHH
Q psy4847          55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLL  134 (396)
Q Consensus        55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L  134 (396)
                      +..++.+.++. ++++.|.+.++..+||++++ ++++|+++.+||+....   .++.++   +.+++.++.+++++.+++
T Consensus         3 ~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~   74 (106)
T cd04582           3 PITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG---GCCGDH---AEPFKVTVSVDDDLRIVL   74 (106)
T ss_pred             CcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc---cchhhh---cccCCEEECCCCCHHHHH
Confidence            56788999998 99999988999999999754 79999999999986432   134444   446778899999999999


Q ss_pred             HHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         135 KQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       135 ~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +.|.+. ....++|+        |+.|+++|+||..|++.
T Consensus        75 ~~~~~~-~~~~~~Vv--------~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          75 SRMFAH-DMSWLPCV--------DEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             HHHHHC-CCCeeeEE--------CCCCcEEEEEEHHHhhc
Confidence            999995 77777777        77789999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.17  E-value=1.4e-10  Score=99.44  Aligned_cols=106  Identities=20%  Similarity=0.213  Sum_probs=86.0

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC--------------------------ccc
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP--------------------------DDN  107 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~--------------------------~~~  107 (396)
                      ++.+++.++++. ++++.|.+.++.++||++++ ++++|+++.+||+....                          ...
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04586           3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG   80 (135)
T ss_pred             CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence            367889999999 99999999999999999754 78999999999864210                          011


Q ss_pred             cchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         108 TPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       108 ~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      .++.++   +..++.++++++++.+++..|.+. +.+.++|+        | .|+++|+||..||++
T Consensus        81 ~~v~~~---~~~~~~~v~~~~~~~~~~~~~~~~-~~~~l~Vv--------d-~g~~~Gvit~~di~~  134 (135)
T cd04586          81 RKVADV---MTRPVVTVGEDTPLAEVAELMEEH-RIKRVPVV--------R-GGRLVGIVSRADLLR  134 (135)
T ss_pred             CCHHHH---hCCCceEeCCCCcHHHHHHHHHHc-CCCccCEe--------c-CCEEEEEEEhHhhhc
Confidence            234444   457789999999999999999995 67777777        7 799999999999975

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.17  E-value=3.1e-10  Score=93.16  Aligned_cols=105  Identities=20%  Similarity=0.239  Sum_probs=86.1

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc--cccchhhhhhhhcCCceEEcCCCCHH
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD--DNTPLKTLCQFYQNSCYFVFEDTTLD  131 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~--~~~~l~~v~~~~~~~v~~V~~dt~L~  131 (396)
                      ++..++.+.++. ++.+.|.+.+++++||+++  ++++|+|..+||+.....  ...++.+++   ..++.++.+++++.
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~l~   76 (110)
T cd04595           3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYM---STDVVTVPPDTPLS   76 (110)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHh---cCCCEEECCCCcHH
Confidence            467889999999 9999998889999999986  789999999998743211  223555554   47888999999999


Q ss_pred             HHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         132 VLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       132 ~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +++..|.+. ..+.++|+        | .|+++|+||..|+++
T Consensus        77 ~~~~~~~~~-~~~~~~V~--------~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          77 EVQELMVEH-DIGRVPVV--------E-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             HHHHHHHHc-CCCeeEEE--------e-CCEEEEEEEhHHhhc
Confidence            999999985 67777777        6 689999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.17  E-value=3.5e-10  Score=92.02  Aligned_cols=94  Identities=15%  Similarity=0.166  Sum_probs=81.1

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHH
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVL  133 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~  133 (396)
                      ++..++.+.++. ++++.|.+.+++.+||++++ ++++|+++.+||+...                .+.++.+++++.++
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~----------------~~~~v~~~~~l~~a   63 (96)
T cd04614           2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS----------------EVVTATKRTTVSEC   63 (96)
T ss_pred             CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC----------------CcEEecCCCCHHHH
Confidence            467889999999 99999988999999999765 7899999999997632                16789999999999


Q ss_pred             HHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         134 LKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       134 L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      ++.|.+. +.+.++|+        |+.|+++|+||..||+.
T Consensus        64 ~~~m~~~-~~~~lpVv--------~~~~~~~Giit~~di~~   95 (96)
T cd04614          64 AQKMKRN-RIEQIPII--------NGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             HHHHHHh-CCCeeeEE--------CCCCcEEEEEEHHHhhc
Confidence            9999985 77777777        66689999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.16  E-value=3.7e-10  Score=93.64  Aligned_cols=108  Identities=20%  Similarity=0.211  Sum_probs=86.0

Q ss_pred             EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccc--c---------chhhhhhhhcCCceE
Q psy4847          55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDN--T---------PLKTLCQFYQNSCYF  123 (396)
Q Consensus        55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~--~---------~l~~v~~~~~~~v~~  123 (396)
                      +..++.+.++. ++++.|.+.++..+||+++  ++++|+++.+||+.......  .         .-..+.+++.+++++
T Consensus         3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (122)
T cd04585           3 PITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPIT   79 (122)
T ss_pred             CEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeE
Confidence            56789999999 9999999999999999976  79999999999975322100  0         012234444578899


Q ss_pred             EcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         124 VFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       124 V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +++++++.+++..|.+. ..+.++|+        |+.|+++|+||..||++
T Consensus        80 v~~~~~l~~~~~~~~~~-~~~~~~Vv--------~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          80 VSPDASVEEAAELMLER-KISGLPVV--------DDQGRLVGIITESDLFR  121 (122)
T ss_pred             eCCCCcHHHHHHHHHHc-CCCceeEE--------CCCCcEEEEEEHHHhhh
Confidence            99999999999999985 67777777        77789999999999985

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.16  E-value=3.7e-10  Score=93.76  Aligned_cols=107  Identities=24%  Similarity=0.295  Sum_probs=85.8

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC--CCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcC--CCC
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR--RTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFE--DTT  129 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~--~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~--dt~  129 (396)
                      ++..++.++++. ++++.|.+.++.++||+++.  .++++|+++.+|++..... ..++++++   ..+...+..  +++
T Consensus         3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~~-~~~v~~~~---~~~~~~~~~~~~~~   77 (114)
T cd04602           3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDS-ETPLSEVM---TPREVLVVAPTGIT   77 (114)
T ss_pred             CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhcc-CCCHHHhc---CCCceEEECCCCCC
Confidence            356788999999 99999988999999999852  3789999999999754322 23466665   355667755  999


Q ss_pred             HHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         130 LDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       130 L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +.++++.|.+. ..+.++|+        |+.|+++|+||.+||++
T Consensus        78 l~~~l~~~~~~-~~~~~pVv--------~~~~~~~Gvit~~di~~  113 (114)
T cd04602          78 LEEANEILRES-KKGKLPIV--------NDDGELVALVTRSDLKK  113 (114)
T ss_pred             HHHHHHHHHhc-CCCceeEE--------CCCCeEEEEEEHHHhhc
Confidence            99999999995 77777777        77789999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.15  E-value=3.2e-10  Score=94.82  Aligned_cols=108  Identities=12%  Similarity=0.134  Sum_probs=84.5

Q ss_pred             EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc----cccchhhhhhhhcCCceEEcCCCCH
Q psy4847          55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD----DNTPLKTLCQFYQNSCYFVFEDTTL  130 (396)
Q Consensus        55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~----~~~~l~~v~~~~~~~v~~V~~dt~L  130 (396)
                      +..++.+.++. ++++.|.+++...+||.+++ ++++|+|+.+||+.....    ...++.++|.. ..+++++.+++++
T Consensus         3 ~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l   79 (118)
T cd04617           3 PVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTR-MPNITTTTPEESV   79 (118)
T ss_pred             CEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCC-CCCcEEECCCCcH
Confidence            56889999999 99999989999999999765 789999999998753211    12344555420 0268899999999


Q ss_pred             HHHHHHHHhcCCceEEEEEEeCCCCCCCCC---CceeeeecHHHHHH
Q psy4847         131 DVLLKQFKEGIKGHMAFVHRVNNEGEGDPF---YETVGLITLEDVIE  174 (396)
Q Consensus       131 ~~~L~~f~~~~~~h~avV~~~~~~~~~De~---g~~vGIVTleDIiE  174 (396)
                      .++++.|.++ ..+.++|+        |+.   |+++|+||..|++.
T Consensus        80 ~~~~~~~~~~-~~~~lpVv--------d~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          80 LEAAKKLIEH-QVDSLPVV--------EKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             HHHHHHHHHc-CCCEeeEE--------eCCCccceEEEEEEhhheec
Confidence            9999999995 77767776        554   68999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.14  E-value=2.4e-10  Score=122.03  Aligned_cols=122  Identities=13%  Similarity=0.150  Sum_probs=98.9

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--CC-c-cccchhhhhh
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--DP-D-DNTPLKTLCQ  115 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~~-~-~~~~l~~v~~  115 (396)
                      ++..+|+|+|++.  +..++.++++. ++.+.+.++++..+||+|++ ++++|+|+.+|+...  .. + ...++.+++ 
T Consensus       444 L~~~~V~dim~~~--~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim-  518 (574)
T PRK01862        444 LRTTQMRELIQPA--QTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYA-  518 (574)
T ss_pred             HhhCcHHHHhcCC--CceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhc-
Confidence            5678899999865  67899999999 99999999999999999865 789999999999752  11 1 123455554 


Q ss_pred             hhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCC--CceeeeecHHHHHHHHH
Q psy4847         116 FYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF--YETVGLITLEDVIEELI  177 (396)
Q Consensus       116 ~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~--g~~vGIVTleDIiEeli  177 (396)
                        .++++++.+++++.++++.|.+. +.+..+|+        |+.  ++++|+||..||++++.
T Consensus       519 --~~~~~~v~~d~~L~~al~~m~~~-~~~~lpVV--------d~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        519 --HTPFPLLTPDMPLGDALEHFMAF-QGERLPVV--------ESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             --cCCCeeECCCCCHHHHHHHHHhc-CCCeeeeE--------eCCCCCeEEEEEEHHHHHHHHH
Confidence              57889999999999999999985 66555565        443  58999999999999985

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.14  E-value=5.6e-10  Score=89.97  Aligned_cols=110  Identities=25%  Similarity=0.286  Sum_probs=87.1

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccc-cchhhhhhhhcCCceEEcCCCCHHH
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDN-TPLKTLCQFYQNSCYFVFEDTTLDV  132 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~-~~l~~v~~~~~~~v~~V~~dt~L~~  132 (396)
                      ++..++.+.++. ++++.+.+.++.++||++++ ++++|+++.+||+.....+. .....+..++..++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (113)
T cd02205           2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE   79 (113)
T ss_pred             CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence            356788999999 99999999899999999765 79999999999975432211 1111123344578899999999999


Q ss_pred             HHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         133 LLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       133 ~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      ++..|.+. +.+.++|+        |+.|+++|++|..|+++
T Consensus        80 ~~~~~~~~-~~~~~~V~--------~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          80 AAELMLEH-GIRRLPVV--------DDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHHHHc-CCCEEEEE--------cCCCcEEEEEEHHHhhc
Confidence            99999985 67777777        77899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.14  E-value=2.1e-10  Score=94.48  Aligned_cols=106  Identities=23%  Similarity=0.224  Sum_probs=84.8

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC------ccccchhhhhhhhcCCceEEcCC
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP------DDNTPLKTLCQFYQNSCYFVFED  127 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~------~~~~~l~~v~~~~~~~v~~V~~d  127 (396)
                      ++..++.+.++. ++.+.+.+.+++.+||++++ ++++|+|+.+||+....      ....++.+++   ..++++++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~---~~~~~~v~~~   76 (114)
T cd04629           2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIM---TTEVLTVSPD   76 (114)
T ss_pred             CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHh---ccCceEECCC
Confidence            356789999999 99999988899999999765 78999999999974211      1123455554   4678899999


Q ss_pred             CCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         128 TTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       128 t~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +++.++++.|.+. +.+.++|+        |+ |+++|+||..||++
T Consensus        77 ~~l~~~~~~~~~~-~~~~~~Vv--------~~-~~~~Gvit~~di~~  113 (114)
T cd04629          77 DSIVDLAQLMLKA-KPKRYPVV--------DD-GKLVGQISRRDVLR  113 (114)
T ss_pred             CcHHHHHHHHHHh-CCCccCEE--------EC-CEEEEEEEHHHHhc
Confidence            9999999999995 56656666        55 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.14  E-value=1.9e-10  Score=98.01  Aligned_cols=110  Identities=15%  Similarity=0.219  Sum_probs=85.4

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc----CCccccchhhhhhhhcCCceEEcCCCC
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV----DPDDNTPLKTLCQFYQNSCYFVFEDTT  129 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~----~~~~~~~l~~v~~~~~~~v~~V~~dt~  129 (396)
                      ++.+++.+.++. ++++.|.+.++..+||++++ ++++|+++.+||+..    ..+...++.++|   .+++.++.++++
T Consensus         3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im---~~~~~~v~~~~~   77 (124)
T cd04608           3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKAL---YKQFKRVNKNDT   77 (124)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHh---hccceecCCCCC
Confidence            467899999999 99999999999999999765 789999999999741    111234666666   488999999999


Q ss_pred             HHHHHHHHHhc--------CCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHH
Q psy4847         130 LDVLLKQFKEG--------IKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL  176 (396)
Q Consensus       130 L~~~L~~f~~~--------~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEel  176 (396)
                      +.++.+.|...        .+.+.++|+        |++|+++||||..||+..+
T Consensus        78 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--------~~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          78 LGKLSRILETDAFLLVFFEQISSAAIGK--------EKQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             HHHHHhhcccCCceEEEecccccccccc--------ccccceEEEEehhHhhhhC
Confidence            99999965321        023444454        6779999999999998753

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.14  E-value=4.7e-10  Score=93.34  Aligned_cols=106  Identities=19%  Similarity=0.233  Sum_probs=85.8

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC-------------ccccchhhhhhhhcCC
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP-------------DDNTPLKTLCQFYQNS  120 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~-------------~~~~~l~~v~~~~~~~  120 (396)
                      ++.+++.++++. +++..+.+.+++++||++++ ++++|+++.+||+....             ....++.+++   ..+
T Consensus         2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~   76 (121)
T cd04584           2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIM---TKD   76 (121)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHh---hCC
Confidence            357889999999 99999999999999999875 79999999999874321             1123455554   478


Q ss_pred             ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         121 CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       121 v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +.++++++++.++++.|.++ ..+.++|+        |. |+++|+||..||++
T Consensus        77 ~~~i~~~~~l~~~~~~~~~~-~~~~~~V~--------~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          77 VITVHPLDTVEEAALLMREH-RIGCLPVV--------ED-GRLVGIITETDLLR  120 (121)
T ss_pred             CeEECCCCcHHHHHHHHHHc-CCCeEEEe--------eC-CEEEEEEEHHHhhc
Confidence            89999999999999999985 66666776        55 89999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.14  E-value=5.9e-10  Score=91.66  Aligned_cols=104  Identities=15%  Similarity=0.147  Sum_probs=85.5

Q ss_pred             EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC--C--ccccchhhhhhhhcCCceEEcCCCCH
Q psy4847          55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD--P--DDNTPLKTLCQFYQNSCYFVFEDTTL  130 (396)
Q Consensus        55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~--~--~~~~~l~~v~~~~~~~v~~V~~dt~L  130 (396)
                      +..++.+.++. ++++.|.+.++..+||+++  ++++|+++.+|++...  .  ....++.+++   ..+++.|++++++
T Consensus         3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~---~~~~~~v~~~~~l   76 (111)
T cd04589           3 PLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIA---TFPLITVDPDDFL   76 (111)
T ss_pred             CEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHh---CCCcEEECCCCcH
Confidence            45788999999 9999999999999999976  6899999999987531  1  1223566655   4788999999999


Q ss_pred             HHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         131 DVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       131 ~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      .++++.|.+. ..+.++|+        |+ |+++|+||..|+++
T Consensus        77 ~~~~~~~~~~-~~~~~~Vv--------~~-~~~~G~it~~dl~~  110 (111)
T cd04589          77 FNALLLMTRH-RIHRVVVR--------EG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             HHHHHHHHHh-CccEEEEe--------eC-CEEEEEEEhHHhhc
Confidence            9999999995 78888887        54 89999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.14  E-value=7.9e-10  Score=90.30  Aligned_cols=104  Identities=20%  Similarity=0.218  Sum_probs=85.3

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHH
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVL  133 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~  133 (396)
                      ++.++..+.++. +++..+.+.+++++||++++ ++++|+++.++++....+  .++..++   ..++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~~--~~~~~~~---~~~~~~v~~~~~l~~~   74 (106)
T cd04638           2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPEE--EQLALLM---TRDPPTVSPDDDVKEA   74 (106)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhcccc--chHHHHh---cCCCceECCCCCHHHH
Confidence            467888899999 89999988999999999876 789999999999754322  2444443   5778899999999999


Q ss_pred             HHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         134 LKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       134 L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +..|.+. +.+.++|+        |. |+++|+||.+|+++
T Consensus        75 ~~~~~~~-~~~~~~Vv--------d~-~~~~G~it~~d~~~  105 (106)
T cd04638          75 AKLMVEN-NIRRVPVV--------DD-GKLVGIVTVADIVR  105 (106)
T ss_pred             HHHHHHc-CCCEEEEE--------EC-CEEEEEEEHHHhhc
Confidence            9999985 67777777        53 79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.13  E-value=7.7e-10  Score=90.95  Aligned_cols=106  Identities=22%  Similarity=0.281  Sum_probs=85.7

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc---CCc--cccchhhhhhhhcCCceEEcCCC
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV---DPD--DNTPLKTLCQFYQNSCYFVFEDT  128 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~---~~~--~~~~l~~v~~~~~~~v~~V~~dt  128 (396)
                      ++..++.++++. ++.+.|.+.++..+||+++  ++++|+++.+||+..   ...  ...++.+++   ...+.++.+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~   75 (113)
T cd04622           2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVM---TRGVVTVTEDD   75 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhc---cCCccEECCCC
Confidence            356789999999 9999999999999999976  899999999998621   111  112355554   46788999999


Q ss_pred             CHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         129 TLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       129 ~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      ++.++++.|... ..+.++|+        |+.|+++|+||..|+++
T Consensus        76 ~~~~~~~~~~~~-~~~~~~V~--------~~~~~~~G~it~~di~~  112 (113)
T cd04622          76 DVDEAARLMREH-QVRRLPVV--------DDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             CHHHHHHHHHHc-CCCeeeEE--------CCCCcEEEEEEHHHhhc
Confidence            999999999984 67777777        77789999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.13  E-value=6.4e-10  Score=91.44  Aligned_cols=106  Identities=21%  Similarity=0.203  Sum_probs=84.3

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc-c-CCc--cc-cchhhhhhhhcCCceEEcCCC
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL-V-DPD--DN-TPLKTLCQFYQNSCYFVFEDT  128 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~-~-~~~--~~-~~l~~v~~~~~~~v~~V~~dt  128 (396)
                      ++..+..+.++. ++++.|.+.+++++||.++  ++++|+|+.+|++. . ...  .. .++.+++   .+++.++++++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~---~~~~~~v~~~~   75 (113)
T cd04587           2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVM---TPNPVCATSDT   75 (113)
T ss_pred             CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhc---CCCCeEEcCCC
Confidence            356788999999 9999998899999999975  78999999999863 1 111  11 3455554   57888999999


Q ss_pred             CHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         129 TLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       129 ~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      ++.+++..|.+. ..+.++|+        |++|+++|+||..||+.
T Consensus        76 ~l~~~~~~~~~~-~~~~l~Vv--------~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          76 PVLEALHLMVQG-KFRHLPVV--------DKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             CHHHHHHHHHHc-CCCcccEE--------CCCCCEEEEEEHHHhcc
Confidence            999999999985 56555666        66789999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.13  E-value=5.7e-10  Score=94.38  Aligned_cols=109  Identities=17%  Similarity=0.253  Sum_probs=85.8

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--CC---------------ccccchhhhhhh
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--DP---------------DDNTPLKTLCQF  116 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~~---------------~~~~~l~~v~~~  116 (396)
                      ++.+++.+.++. ++.+.|.+.+++.+||++++ ++++|+++.+||+..  ..               ....++.++   
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   76 (128)
T cd04632           2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDA---   76 (128)
T ss_pred             CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHH---
Confidence            466789999999 99999999999999999865 789999999998632  11               001234444   


Q ss_pred             hcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         117 YQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       117 ~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +.++++++++++++.+++..|.+. ..+.++|.+      .|+.|+++|+||.+||++
T Consensus        77 ~~~~~~~v~~~~~l~~~l~~~~~~-~~~~~~V~~------~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          77 MSSPVITASPNDSVRDAVDRMLEN-DDSSVVVVT------PDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             hcCCCceECCCCcHHHHHHHHHhC-CCCeEeEec------cCCCCcEEEEEEhHhhhc
Confidence            457899999999999999999985 677777751      124589999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.13  E-value=6.1e-10  Score=91.05  Aligned_cols=100  Identities=14%  Similarity=0.161  Sum_probs=83.5

Q ss_pred             EEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHH
Q psy4847          56 YMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLK  135 (396)
Q Consensus        56 ~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~  135 (396)
                      ..++.+.++. ++++.+.+.++.++||+++  ++++|+++.+|++....   .++.+++   ..++.+|+++.++.+++.
T Consensus         4 ~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~---~~~~~~v~~~~~l~~a~~   74 (104)
T cd04594           4 IKVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYI---VRGIPYVRLTSTAEEAWE   74 (104)
T ss_pred             eEECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhh---hcCCcEEcCCCCHHHHHH
Confidence            3578899999 9999999999999999985  78999999999985432   2344444   467889999999999999


Q ss_pred             HHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         136 QFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       136 ~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      .|.+. +.+.++|+        | .|+++|+||..||++
T Consensus        75 ~~~~~-~~~~~~Vv--------~-~~~~iGvit~~dl~~  103 (104)
T cd04594          75 VMMKN-KTRWCPVV--------D-DGKFKGIVTLDSILD  103 (104)
T ss_pred             HHHHc-CcceEEEE--------E-CCEEEEEEEHHHhhc
Confidence            99985 77877887        5 389999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.12  E-value=6e-10  Score=90.82  Aligned_cols=103  Identities=22%  Similarity=0.292  Sum_probs=82.4

Q ss_pred             EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc----ccchhhhhhhhcCCceEEcCCCCH
Q psy4847          55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD----NTPLKTLCQFYQNSCYFVFEDTTL  130 (396)
Q Consensus        55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~----~~~l~~v~~~~~~~v~~V~~dt~L  130 (396)
                      +.+++.++++. ++.+.|.+.++.++||+++  ++++|+++.+||+......    ..++.++   +.+++.++++++++
T Consensus         3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~l   76 (110)
T cd04609           3 VVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREV---MGEPLPTVDPDAPI   76 (110)
T ss_pred             cEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHH---hcCCCceeCCCCcH
Confidence            56788999999 9999999999999999976  7899999999997642111    1344444   45788899999999


Q ss_pred             HHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         131 DVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       131 ~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      .+++..|.+.  .+ ++|+        |+.|+++|+||.+||+.
T Consensus        77 ~~~~~~~~~~--~~-~~vv--------~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          77 EELSELLDRG--NV-AVVV--------DEGGKFVGIITRADLLK  109 (110)
T ss_pred             HHHHHHHHhC--Cc-eeEE--------ecCCeEEEEEeHHHhhc
Confidence            9999999883  34 4555        66789999999999874

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.12  E-value=3.5e-10  Score=117.16  Aligned_cols=122  Identities=14%  Similarity=0.233  Sum_probs=98.5

Q ss_pred             HHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--CC--ccccc
Q psy4847          34 ISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--DP--DDNTP  109 (396)
Q Consensus        34 i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~~--~~~~~  109 (396)
                      ..++  |+..+|+++|++.  +.++..++++. ++++.|.+.+++.+||++++ ++++|+|+.+|++..  ..  ....+
T Consensus       328 ~~~~--l~~~~v~~im~~~--~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~  401 (454)
T TIGR01137       328 VFDV--LKNATVKDLHLPA--PVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDA  401 (454)
T ss_pred             HHHH--hccCCHHHhCcCC--CeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCC
Confidence            4555  7889999999864  78999999999 99999999999999999765 789999999998752  11  11234


Q ss_pred             hhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHH
Q psy4847         110 LKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL  176 (396)
Q Consensus       110 l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEel  176 (396)
                      +.++|   .+++++|++++++.+++..|.+.   +.++|.        + .|+++|+||..||++.|
T Consensus       402 v~~im---~~~~~~v~~~~~l~~a~~~~~~~---~~~vV~--------~-~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       402 VSKVM---SKKFIQIGEGEKLSDLSKFLEKN---SSAIVT--------E-EGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             HHHhc---CCCCeEECCcCcHHHHHHHHHHC---CeeEEE--------E-CCEEEEEEEHHHHHHhh
Confidence            55555   57888999999999999999873   345564        3 58999999999999986

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.12  E-value=5e-10  Score=94.87  Aligned_cols=106  Identities=16%  Similarity=0.243  Sum_probs=81.2

Q ss_pred             EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc-------C---CccccchhhhhhhhcCCce--
Q psy4847          55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV-------D---PDDNTPLKTLCQFYQNSCY--  122 (396)
Q Consensus        55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~-------~---~~~~~~l~~v~~~~~~~v~--  122 (396)
                      +.+++.++++. ++++.|.+.++..+||++++ ++++|+++.+||...       .   .....++.++|   ..+..  
T Consensus         3 ~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im---~~~~~~~   77 (126)
T cd04640           3 PIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVM---TPKEDLK   77 (126)
T ss_pred             CeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhc---Cchhhhc
Confidence            56789999999 99999988999999999765 789999999998741       1   11123455555   34332  


Q ss_pred             EE----cCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCC-CceeeeecHHHHHH
Q psy4847         123 FV----FEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF-YETVGLITLEDVIE  174 (396)
Q Consensus       123 ~V----~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~-g~~vGIVTleDIiE  174 (396)
                      .+    .+++++.++++.|.++ +.+.++|+        |+. |.++|+||++||++
T Consensus        78 ~~~~~~~~~~~l~~~l~~m~~~-~~~~lpVv--------d~~~~~~~G~it~~di~~  125 (126)
T cd04640          78 ALDLEELENASVGDVVETLKAS-GRQHALVV--------DREHHQIRGIISTSDIAR  125 (126)
T ss_pred             cccHHHhccCcHHHHHHHHHHC-CCceEEEE--------ECCCCEEEEEEeHHHHhh
Confidence            23    3789999999999985 77777777        554 78999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.10  E-value=4.9e-10  Score=92.53  Aligned_cols=101  Identities=19%  Similarity=0.233  Sum_probs=83.9

Q ss_pred             CCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC--CCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCH
Q psy4847          53 EDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR--RTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTL  130 (396)
Q Consensus        53 ~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~--~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L  130 (396)
                      .++..++++.++. ++.+.+.+.+++++||+++.  .++++|+|+.+||......          +|.+++.++++++++
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~----------~m~~~~~~v~~~~~l   70 (105)
T cd04591           2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN----------YIDPSPFTVSPRTSL   70 (105)
T ss_pred             CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH----------hccCCCceECCCCcH
Confidence            3467889999999 99999999999999999762  3789999999999753221          335778899999999


Q ss_pred             HHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         131 DVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       131 ~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      .+++..|++. +.+.++|+        + .|+++|+||..|+++
T Consensus        71 ~~~~~~~~~~-~~~~~pVv--------~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          71 EKVHQLFRKL-GLRHLLVV--------D-EGRLVGIITRKDLLK  104 (105)
T ss_pred             HHHHHHHHHc-CCCEEEEE--------E-CCeEEEEEEhhhhhc
Confidence            9999999985 77777776        3 479999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.09  E-value=1.1e-09  Score=90.60  Aligned_cols=105  Identities=16%  Similarity=0.235  Sum_probs=82.6

Q ss_pred             EEEEeCCCChhHHHHHHHHHcC-CcEEEEEeCCCCcEEEEEEhhhhcccCCc----cccchhhhhhhhcCCceEEcCC--
Q psy4847          55 VYMLSYDAILDFETVSEIMKSG-YSRIPVYEDRRTNIVTMFYIKDLALVDPD----DNTPLKTLCQFYQNSCYFVFED--  127 (396)
Q Consensus        55 v~~l~~d~~l~~e~i~~i~~~g-~sriPV~~~~~~~IVGiL~vkDLl~~~~~----~~~~l~~v~~~~~~~v~~V~~d--  127 (396)
                      +..++.+.++. ++.+.|.+.+ +..+||.++  ++++|+|+.+||+.....    ...++.++   +.++++++.++  
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~---~~~~~~~v~~~~~   76 (115)
T cd04620           3 PLTVTPDTPVA-DAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKDLSDLPIGEV---MTQPVVTLQESEI   76 (115)
T ss_pred             CeEeCCCCcHH-HHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCCccccCHHHh---cCCCcEEEecccc
Confidence            45788999999 9999998888 677787763  789999999999753211    12344444   45778889887  


Q ss_pred             CCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         128 TTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       128 t~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +++.+++..|.+. ..+.++|+        |+.|+++|+||.+||+.
T Consensus        77 ~~l~~a~~~~~~~-~~~~~pVv--------d~~~~~~Gvit~~dl~~  114 (115)
T cd04620          77 QDIFTALSLFRQH-QIRHLPVL--------DDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             cCHHHHHHHHHHh-CCceEEEE--------cCCCCEEEEEEhHHhhc
Confidence            7899999999995 77777787        77799999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.09  E-value=1.6e-09  Score=113.80  Aligned_cols=128  Identities=17%  Similarity=0.108  Sum_probs=103.8

Q ss_pred             HHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC--CCcEEEEEEhhhhcccCCcc
Q psy4847          29 DEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR--RTNIVTMFYIKDLALVDPDD  106 (396)
Q Consensus        29 ~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~--~~~IVGiL~vkDLl~~~~~~  106 (396)
                      +....++.++.+     +..|++  +++++++++++. ++++.|.+++++.+||++++  .++++|+|+.+||.... ..
T Consensus        91 ~q~~~Irkvk~~-----~~gmi~--dpvtV~pd~tV~-dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-~~  161 (505)
T PLN02274         91 EQAAIVRKAKSR-----RVGFVS--DPVVKSPSSTIS-SLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-DR  161 (505)
T ss_pred             HHHHHHHHhhcc-----cccccC--CCeeeCCCCcHH-HHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-cc
Confidence            345677777644     222663  478999999999 99999999999999999763  37899999999997654 23


Q ss_pred             ccchhhhhhhhcCC--ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         107 NTPLKTLCQFYQNS--CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       107 ~~~l~~v~~~~~~~--v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      ..++.++|.   .+  ++++++++++.++++.|.+. +.+.++|+        |+.++++|+||..||+..+.
T Consensus       162 ~~~V~eIMt---~~~~lvtv~~~~sL~eAl~~m~~~-~~~~LPVV--------D~~g~LvGvITr~DIlk~~~  222 (505)
T PLN02274        162 ETKLSEVMT---SDDDLVTAPAGIDLEEAEAVLKDS-KKGKLPLV--------NEDGELVDLVTRTDVKRVKG  222 (505)
T ss_pred             CCcHHHHhc---cCCCcEEECCCCCHHHHHHHHHHc-CCCEEEEE--------cCCCeEEEEEEHHHHHHHhh
Confidence            456777764   44  78999999999999999995 77888888        77889999999999999886

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.09  E-value=8.7e-10  Score=92.18  Aligned_cols=109  Identities=23%  Similarity=0.199  Sum_probs=85.5

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc----------c-ccchhhhhhhhcCCce
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD----------D-NTPLKTLCQFYQNSCY  122 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~----------~-~~~l~~v~~~~~~~v~  122 (396)
                      ++..++.+.++. ++++.+.+.+++++||+++  ++++|+++.+||+.....          + ...-..+.+++.++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (122)
T cd04637           2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI   78 (122)
T ss_pred             CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence            356789999999 9999999999999999985  789999999999642100          0 0001123344457889


Q ss_pred             EEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         123 FVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       123 ~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      ++++++++.++++.|.+. ..+.++|+        |+.|+++|+||+.|+++
T Consensus        79 ~v~~~~~l~~~~~~~~~~-~~~~~~vv--------~~~~~~~Gvit~~dll~  121 (122)
T cd04637          79 TVSPDTPVDEASKLLLEN-SISCLPVV--------DENGQLIGIITWKDLLK  121 (122)
T ss_pred             eeCCCCcHHHHHHHHHHc-CCCeEeEE--------CCCCCEEEEEEHHHhhh
Confidence            999999999999999985 66777777        77789999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.08  E-value=1.3e-09  Score=89.49  Aligned_cols=105  Identities=17%  Similarity=0.201  Sum_probs=84.0

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC--Cc---cccchhhhhhhhcCCceEEcCCC
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD--PD---DNTPLKTLCQFYQNSCYFVFEDT  128 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~--~~---~~~~l~~v~~~~~~~v~~V~~dt  128 (396)
                      ++..++.++++. ++++.|.+.+++.+||+++  ++++|+++.+|++...  ..   ...++.++   +.++++++++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~   75 (112)
T cd04802           2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEV---MSTPLITIDPNA   75 (112)
T ss_pred             CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHh---cCCCcEEECCCC
Confidence            356789999999 9999999999999999986  4899999999997521  11   12344444   457889999999


Q ss_pred             CHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         129 TLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       129 ~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      ++.++++.|.+. ..+.++|+        |+. +++|+||..||++
T Consensus        76 ~l~~~~~~~~~~-~~~~~~Vv--------~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          76 SLNEAAKLMAKH-GIKRLPVV--------DDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             CHHHHHHHHHHc-CCCeeEEe--------eCC-EEEEEEEhhhhhc
Confidence            999999999985 67667776        554 8999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.08  E-value=8.1e-10  Score=115.96  Aligned_cols=110  Identities=19%  Similarity=0.086  Sum_probs=91.1

Q ss_pred             EEEeCCCChhHHHHHHHHHcCCcEEEEEeCC--CCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHH
Q psy4847          56 YMLSYDAILDFETVSEIMKSGYSRIPVYEDR--RTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVL  133 (396)
Q Consensus        56 ~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~--~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~  133 (396)
                      .++++++++. ++++.|.+.+++.+||+++.  .++++|+|+.+||.........++.++|.. ..++.++.+++++.++
T Consensus       108 ~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~~V~dIMt~-~~~~itv~~d~~l~eA  185 (502)
T PRK07107        108 SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTKVKDFMTP-FEKLVTANEGTTLKEA  185 (502)
T ss_pred             CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCCCHHHHhCC-CCCeEEECCCCcHHHH
Confidence            4789999999 99999999999999999862  479999999999975432334567777641 1267889999999999


Q ss_pred             HHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHH
Q psy4847         134 LKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL  176 (396)
Q Consensus       134 L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEel  176 (396)
                      ++.|.++ +.+.++|+        |+.|+++||||..||++..
T Consensus       186 l~lM~e~-~i~~LPVV--------D~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        186 NDIIWDH-KLNTLPIV--------DKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             HHHHHHc-CCCEEEEE--------cCCCeEEEEEEhHHHHhcc
Confidence            9999995 77777787        7788999999999999853

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.07  E-value=1e-09  Score=91.44  Aligned_cols=104  Identities=22%  Similarity=0.243  Sum_probs=84.5

Q ss_pred             EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc--------------cccchhhhhhhhcCC
Q psy4847          55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD--------------DNTPLKTLCQFYQNS  120 (396)
Q Consensus        55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~--------------~~~~l~~v~~~~~~~  120 (396)
                      +..++.+.++. ++.+.|.+.++.++||+++  ++++|+++.+|++.....              ...++.+++   ..+
T Consensus         3 ~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~   76 (121)
T cd04633           3 VITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIM---TRP   76 (121)
T ss_pred             CEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHc---cCC
Confidence            56789999999 9999998899999999985  899999999998743111              122444444   578


Q ss_pred             ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         121 CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       121 v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +.++++++++.+++..|.+. ..+.++|+        |+ |+++|+||..|++.
T Consensus        77 ~~~v~~~~~l~~~~~~~~~~-~~~~~~Vv--------~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          77 VITIEPDTSVSDVASLMLEN-NIGGLPVV--------DD-GKLVGIVTRTDILR  120 (121)
T ss_pred             ceEECCCCcHHHHHHHHHHc-CCCcccEE--------EC-CEEEEEEEHHHhhc
Confidence            89999999999999999985 66667777        66 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.04  E-value=1.5e-09  Score=94.50  Aligned_cols=108  Identities=16%  Similarity=0.166  Sum_probs=84.8

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC--Ccc--c----------------------
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD--PDD--N----------------------  107 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~--~~~--~----------------------  107 (396)
                      ++++++.+.++. ++++.|.+.+++.+||+++  ++++|+++.+|++...  ...  .                      
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (143)
T cd04634           2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE   78 (143)
T ss_pred             CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence            367889999999 9999999999999999985  7899999999986421  110  0                      


Q ss_pred             -------cchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         108 -------TPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       108 -------~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                             .+...+.+++.++++++++++++.+++..|.+. +.+.++|+        ++ |+++|+||..|+++
T Consensus        79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~-~~~~~~Vv--------~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRH-KIKRLPVV--------ED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHc-CCCEEEEE--------EC-CEEEEEEEHHHhhc
Confidence                   011224444567899999999999999999985 66666676        55 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.03  E-value=1.7e-09  Score=113.59  Aligned_cols=118  Identities=16%  Similarity=0.184  Sum_probs=98.4

Q ss_pred             ccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC--CCcEEEEEEhhhhcccCCccccchhhhhhhhcC--
Q psy4847          44 IVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR--RTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQN--  119 (396)
Q Consensus        44 tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~--~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~--  119 (396)
                      ++.+.|.+  +++++++++++. ++++.|.+.+++.+||++++  .++++|+|+.+||..... ...+++++|.   +  
T Consensus        97 ~~e~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~-~~~~V~diMt---~~~  169 (495)
T PTZ00314         97 RFENGFIM--DPYVLSPNHTVA-DVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKD-KSTPVSEVMT---PRE  169 (495)
T ss_pred             cccccccc--CCeecCCCCCHH-HHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhccc-CCCCHHHhhC---CcC
Confidence            35567764  367999999999 99999999999999999763  368999999999986543 2356777763   4  


Q ss_pred             CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      ++.++++++++.++++.|.+. +.+.++|+        |+.++++|+||..||++...
T Consensus       170 ~lvtv~~~~sl~eAl~lm~e~-~i~~LPVV--------d~~g~liGIIT~~DIl~~~~  218 (495)
T PTZ00314        170 KLVVGNTPISLEEANEVLRES-RKGKLPIV--------NDNGELVALVSRSDLKKNRG  218 (495)
T ss_pred             CceEeCCCCCHHHHHHHHHHc-CCCeEEEE--------cCCCcEEEEEEehHhhhccc
Confidence            788999999999999999995 78888888        88899999999999998753

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.03  E-value=2.6e-09  Score=111.47  Aligned_cols=120  Identities=15%  Similarity=0.079  Sum_probs=101.1

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcC
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQN  119 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~  119 (396)
                      ++..++.++|++.  ++++++++++. ++.+.|.+.+++.+||+++  ++++|+|+.+||...+..  .++.++|   ..
T Consensus        85 v~~VKv~eim~~~--pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~~~--~~V~dIM---t~  154 (475)
T TIGR01303        85 VAFVKSRDLVLDT--PITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVDRF--TQVRDIM---ST  154 (475)
T ss_pred             HhhcchhhccccC--CeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCCCC--CCHHHHc---cC
Confidence            3466788999864  78899999999 9999999999999999875  689999999999765433  4677776   47


Q ss_pred             CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847         120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ  178 (396)
Q Consensus       120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~  178 (396)
                      +++++++++++.+++..|.++ +.+.++|+        |+.|+++|+||..||+.....
T Consensus       155 ~litv~~~~sL~eAl~lM~~~-~i~~LPVV--------D~~g~LvGIIT~~DLl~~~~~  204 (475)
T TIGR01303       155 DLVTAPADTEPRKAFDLLEHA-PRDVAPLV--------DADGTLAGILTRTGALRATIY  204 (475)
T ss_pred             CceEeCCCCcHHHHHHHHHHc-CCCEEEEE--------cCCCeEEEEEEHHHHHHHHhC
Confidence            899999999999999999995 67777777        778899999999999987753

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.01  E-value=2.8e-09  Score=87.62  Aligned_cols=105  Identities=16%  Similarity=0.272  Sum_probs=82.9

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc-----cccchhhhhhhhcCCceEEcCCC
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD-----DNTPLKTLCQFYQNSCYFVFEDT  128 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~-----~~~~l~~v~~~~~~~v~~V~~dt  128 (396)
                      ++..++.++++. ++++.|.+.++..+||.++  ++++|+++.+||+.....     ...++.+++   ..++.++.+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~---~~~~~~v~~~~   75 (112)
T cd04625           2 TIYTVAPETLLS-EAVATMAEQDLGSLVVMER--GELVGLLTFREVLQAMAQHGAGVLDTTVRAIM---NPEPIVASPDD   75 (112)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHh---CCCCeEECCCC
Confidence            467889999999 9999888888888877753  789999999999743111     123455555   46788999999


Q ss_pred             CHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         129 TLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       129 ~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      ++.++++.|.+. ..+.++|+        |+ |+++|+||..||+.
T Consensus        76 ~l~~a~~~m~~~-~~~~l~Vv--------~~-~~~~Gvvt~~dl~~  111 (112)
T cd04625          76 SIDEVRRLMVER-HLRYLPVL--------DG-GTLLGVISFHDVAK  111 (112)
T ss_pred             CHHHHHHHHHHc-CCCeeeEE--------EC-CEEEEEEEHHHhhc
Confidence            999999999984 66666776        54 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.01  E-value=2.7e-09  Score=88.59  Aligned_cols=105  Identities=15%  Similarity=0.222  Sum_probs=81.8

Q ss_pred             EEEEeCCCChhHHHHHHHHHcC-CcEEEEEeCCCCcEEEEEEhhhhcccCCc-------cccchhhhhhhhcCCceEEcC
Q psy4847          55 VYMLSYDAILDFETVSEIMKSG-YSRIPVYEDRRTNIVTMFYIKDLALVDPD-------DNTPLKTLCQFYQNSCYFVFE  126 (396)
Q Consensus        55 v~~l~~d~~l~~e~i~~i~~~g-~sriPV~~~~~~~IVGiL~vkDLl~~~~~-------~~~~l~~v~~~~~~~v~~V~~  126 (396)
                      +..++.++++. ++++.+...+ ++.+||+++  ++++|+++.+||+.....       ...++.++|   ..++..+++
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~---~~~~~~v~~   76 (119)
T cd04598           3 APTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVM---DPDPLIVEA   76 (119)
T ss_pred             cCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhc---CCCcEEecC
Confidence            55788999999 9999988777 899999986  899999999998743111       123455554   578899999


Q ss_pred             CCCHHHHHHHHHhcCCc-eE--EEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         127 DTTLDVLLKQFKEGIKG-HM--AFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       127 dt~L~~~L~~f~~~~~~-h~--avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      ++++.+++..|.+. .. ++  .+|+        ++.|+++|+||..|+++
T Consensus        77 ~~~~~~~~~~~~~~-~~~~~~~~~vv--------~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          77 DTPLEEVSRLATGR-DSQNLYDGFIV--------TEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             CCCHHHHHHHHHcC-CcccccccEEE--------eeCCeEEEEEEHHHHhc
Confidence            99999999999874 42 22  2355        56799999999999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.97  E-value=2.9e-09  Score=102.42  Aligned_cols=111  Identities=15%  Similarity=0.138  Sum_probs=91.4

Q ss_pred             cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC---ccccchhhhhhhhcC
Q psy4847          43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP---DDNTPLKTLCQFYQN  119 (396)
Q Consensus        43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~---~~~~~l~~v~~~~~~  119 (396)
                      .+|+++|.+. ++..++.++++. ++++.|.+.++..+||++++ ++++|+++.+||+....   ....++++++   .+
T Consensus       155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~~~~~v~~im---~~  228 (268)
T TIGR00393       155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGSLKSEVRDFM---TL  228 (268)
T ss_pred             hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCcccCcHHHhC---CC
Confidence            6899999864 267899999999 99999998999999999865 78999999999975321   1234566665   47


Q ss_pred             CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeec
Q psy4847         120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLIT  168 (396)
Q Consensus       120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVT  168 (396)
                      +++.|.+++++.++++.|.+. +.+.++|+        |+.|+++|+|+
T Consensus       229 ~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~g~l~GvI~  268 (268)
T TIGR00393       229 GPKTFKLDALLLEALEFLERR-KITSLVVV--------DDHNKVLGVLH  268 (268)
T ss_pred             CCeEECCCCcHHHHHHHHHHc-CCcEEEEE--------CCCCeEEEEEC
Confidence            888999999999999999995 77777777        77789999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.92  E-value=1.5e-08  Score=83.57  Aligned_cols=111  Identities=27%  Similarity=0.337  Sum_probs=87.4

Q ss_pred             ccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc--cc-chhhhhhhhcCCce
Q psy4847          46 GDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD--NT-PLKTLCQFYQNSCY  122 (396)
Q Consensus        46 ~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~--~~-~l~~v~~~~~~~v~  122 (396)
                      .++|.  .++.++.++.++. ++...|.+++++++||.+.  ++++|+++.+|++......  .. ++..+|   .+++.
T Consensus         2 ~~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~---~~~~~   73 (117)
T COG0517           2 KDIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVM---TKPVV   73 (117)
T ss_pred             ccccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhc---cCCcE
Confidence            34555  4578999999999 9999999999999999975  3799999999998643221  11 356665   46889


Q ss_pred             EEcCCCCHHHHHHHHHh-cCCceEEEEEEeCCCCCCCCCC-ceeeeecHHHHH
Q psy4847         123 FVFEDTTLDVLLKQFKE-GIKGHMAFVHRVNNEGEGDPFY-ETVGLITLEDVI  173 (396)
Q Consensus       123 ~V~~dt~L~~~L~~f~~-~~~~h~avV~~~~~~~~~De~g-~~vGIVTleDIi  173 (396)
                      ++.+++++.++++.|.+ . +.+..+|+        |+.+ +++||||..||+
T Consensus        74 ~~~~~~~~~~~~~~m~~~~-~~~~lpVv--------~~~~~~lvGivt~~di~  117 (117)
T COG0517          74 TVDPDTPLEEALELMVERH-KIRRLPVV--------DDDGGKLVGIITLSDIL  117 (117)
T ss_pred             EECCCCCHHHHHHHHHHHc-CcCeEEEE--------ECCCCeEEEEEEHHHcC
Confidence            99999999999999998 4 34555555        5554 999999999974

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=98.55  E-value=2.1e-07  Score=96.84  Aligned_cols=125  Identities=18%  Similarity=0.189  Sum_probs=103.0

Q ss_pred             HHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc---cCC-ccccchh
Q psy4847          36 GALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL---VDP-DDNTPLK  111 (396)
Q Consensus        36 ~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~---~~~-~~~~~l~  111 (396)
                      +.-++--.+|+++|+..  .+++++.+++. ++...|.+.|.+.+.|++++ +...|||+.+||..   .+. +...++.
T Consensus       142 ~~~e~~~trv~~~~~~~--~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~  217 (610)
T COG2905         142 GESEFILTRVGEVKTLP--AVTVSPQASIQ-DAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVS  217 (610)
T ss_pred             ccchHHHHHHHHHhcCC--CcccCccCcHH-HHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchh
Confidence            33445567799999865  78999999999 99999999999988888765 88999999999964   222 2235677


Q ss_pred             hhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         112 TLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       112 ~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      ++|   +.|+..|..++.+.+|+-.|-+. +.|-.+|.         +.|+++||||+.||+...-
T Consensus       218 evm---T~p~~svd~~~~~feAml~m~r~-~I~hl~V~---------e~gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         218 EVM---TSPVISVDRGDFLFEAMLMMLRN-RIKHLPVT---------EDGQPLGILTLTDILRLFS  270 (610)
T ss_pred             hhh---ccCceeecCcchHHHHHHHHHHh-CCceeeee---------cCCeeeEEeeHHHHHHhhC
Confidence            776   58999999999999999999985 77777786         5699999999999998765

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.54  E-value=3.8e-07  Score=96.97  Aligned_cols=123  Identities=16%  Similarity=0.156  Sum_probs=97.1

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--CCc--------------
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--DPD--------------  105 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~~~--------------  105 (396)
                      ..+|+|+|++  ++.++++++++. ++++.|.++++.++||++++ ++++|+|+.+|++..  ...              
T Consensus        67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~  142 (546)
T PRK14869         67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN  142 (546)
T ss_pred             CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence            4689999985  488999999999 99999999999999999865 799999999998531  000              


Q ss_pred             ----------------------------------------------cc--------------------------------
Q psy4847         106 ----------------------------------------------DN--------------------------------  107 (396)
Q Consensus       106 ----------------------------------------------~~--------------------------------  107 (396)
                                                                    +.                                
T Consensus       143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~  222 (546)
T PRK14869        143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAK  222 (546)
T ss_pred             HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence                                                          00                                


Q ss_pred             ---cc-----------------hhhhhhhhc-CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeee
Q psy4847         108 ---TP-----------------LKTLCQFYQ-NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGL  166 (396)
Q Consensus       108 ---~~-----------------l~~v~~~~~-~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGI  166 (396)
                         .+                 -..+.++|. +++.++++++++.++++.|.+. +.+.++|+        |+.|+++|+
T Consensus       223 ~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~-~~~~~PVv--------d~~g~lvGi  293 (546)
T PRK14869        223 ENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKS-RYRSYPVV--------DEDGKVVGV  293 (546)
T ss_pred             hCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhc-CCCceEEE--------cCCCCEEEE
Confidence               00                 001334566 6789999999999999999985 65666677        888999999


Q ss_pred             ecHHHHHHHHH
Q psy4847         167 ITLEDVIEELI  177 (396)
Q Consensus       167 VTleDIiEeli  177 (396)
                      ||..|++....
T Consensus       294 it~~dl~~~~~  304 (546)
T PRK14869        294 ISRYHLLSPVR  304 (546)
T ss_pred             EEHHHhhcccc
Confidence            99999998653

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.49  E-value=7e-07  Score=77.50  Aligned_cols=93  Identities=13%  Similarity=0.094  Sum_probs=71.1

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccc----c-----------chhhhhh---
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDN----T-----------PLKTLCQ---  115 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~----~-----------~l~~v~~---  115 (396)
                      ++..++.++++. ++++.|.+.++..+||++++ ++++|+|+.+||+.......    .           .+.+++.   
T Consensus         2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~   79 (133)
T cd04592           2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI   79 (133)
T ss_pred             CceEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence            467899999999 99999999999999999765 79999999999874321110    0           0223432   


Q ss_pred             ---hhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEE
Q psy4847         116 ---FYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVH  149 (396)
Q Consensus       116 ---~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~  149 (396)
                         .|..++.++.+++++.++++.|.++ +.+.++|+
T Consensus        80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~-~~~~lPVv  115 (133)
T cd04592          80 SYGGQECGLWTCTPDTDLTTAKKLMEAK-GVKQLPVV  115 (133)
T ss_pred             hhcccCCCCEEECCCCCHHHHHHHHHHc-CCCcCCEe
Confidence               1235788999999999999999995 67766676

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.42  E-value=4e-07  Score=66.63  Aligned_cols=53  Identities=34%  Similarity=0.497  Sum_probs=48.8

Q ss_pred             cccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          45 VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        45 V~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      |+++|++  ++..++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+.
T Consensus         1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~   53 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLK   53 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHh
Confidence            6799997  489999999999 99999999999999999776 89999999999974

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.41  E-value=1.1e-06  Score=64.28  Aligned_cols=53  Identities=21%  Similarity=0.200  Sum_probs=47.8

Q ss_pred             hhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         116 FYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       116 ~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      +|.++++++++++++.++++.|++. +.+.++|+        |+.|+++|+||..||++.+.
T Consensus         4 ~m~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~V~--------d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    4 IMTPPPITVSPDDSLEEALEIMRKN-GISRLPVV--------DEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HSBSSSEEEETTSBHHHHHHHHHHH-TSSEEEEE--------STTSBEEEEEEHHHHHHHHH
T ss_pred             CCcCCCEEEcCcCcHHHHHHHHHHc-CCcEEEEE--------ecCCEEEEEEEHHHHHhhhh
Confidence            3457999999999999999999996 77888888        88999999999999999885

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>KOG1764|consensus

Probab=98.32  E-value=3.5e-06  Score=85.90  Aligned_cols=126  Identities=18%  Similarity=0.189  Sum_probs=97.3

Q ss_pred             ccccccccccCC-CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc---c--cc-hhhhh
Q psy4847          42 RKIVGDVMTKLE-DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD---N--TP-LKTLC  114 (396)
Q Consensus        42 ~~tV~dIMtp~~-dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~---~--~~-l~~v~  114 (396)
                      .+++.|.=..-. ++..+..++++- ++++.|...+++.+||++.. ++.+|.+...|+.......   .  .. +....
T Consensus       225 ~~s~~dl~ig~~~~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~  302 (381)
T KOG1764|consen  225 SKSLSDLGIGTWSNIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEAL  302 (381)
T ss_pred             hCCHHHhCcchhhhheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHh
Confidence            344554433333 388899999999 99999999999999999876 6779999999997532211   1  11 22221


Q ss_pred             hh---hcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847         115 QF---YQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ  178 (396)
Q Consensus       115 ~~---~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~  178 (396)
                      ..   -..+++++.++.+|..++..|..+ +.|-+.|+        |+.|.++|+||+.||+..+..
T Consensus       303 ~~~~~~~~~vvtc~~~ssL~~vi~~lv~~-~vHRl~VV--------d~~~~l~GvvSLsDil~~l~~  360 (381)
T KOG1764|consen  303 SHRPIRFEGVVTCRPTSTLAEVIDKLVAH-RVHRLWVV--------DEDGVLVGVISLSDILSYLVL  360 (381)
T ss_pred             hhcccccCccEEEeecchHHHHHHHHHhc-CceEEEEE--------cCCCcEEEEeeHHHHHHHHHh
Confidence            11   123578999999999999999995 89999999        889999999999999999984

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=98.22  E-value=6.9e-06  Score=64.52  Aligned_cols=80  Identities=25%  Similarity=0.375  Sum_probs=66.9

Q ss_pred             CccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCCCCCcccccCCCccccc
Q psy4847         257 PTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVN  332 (396)
Q Consensus       257 ~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~~s~~~~~  332 (396)
                      .+...||+.|++.+.+++|++|.+.+..    |+....+-.+|..+||..++....                        
T Consensus         5 ~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~------------------------   60 (91)
T PF00027_consen    5 KKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGK------------------------   60 (91)
T ss_dssp             STTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTS------------------------
T ss_pred             CCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCC------------------------
Confidence            4567899999999999999999999998    444456788999999999888621                        


Q ss_pred             ccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847         333 LDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA  369 (396)
Q Consensus       333 ~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a  369 (396)
                               -..++++|.++|+.+.|++..|+..+..
T Consensus        61 ---------~~~~~~~a~~~~~~~~i~~~~~~~~~~~   88 (91)
T PF00027_consen   61 ---------PSPFTVIALTDSEVLRIPREDFLQLLQQ   88 (91)
T ss_dssp             ---------BBSSEEEESSSEEEEEEEHHHHHHHHHH
T ss_pred             ---------ccEEEEEEccCEEEEEEeHHHHHHHHHh
Confidence                     1235999999999999999999988753

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=98.17  E-value=9.2e-06  Score=74.89  Aligned_cols=97  Identities=16%  Similarity=0.175  Sum_probs=80.6

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT  315 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~  315 (396)
                      ++..+..|..+.......+...||..|++++++++|++|.+++..    |++-.....+|..+||..++....    .+ 
T Consensus         9 ~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~----~~-   83 (211)
T PRK11753          9 TDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG----QE-   83 (211)
T ss_pred             CHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCC----CC-
Confidence            567788888888888888888999999999999999999999885    777788899999999998776410    00 


Q ss_pred             CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                                                 .-++++|.+||..+.|++..+...++
T Consensus        84 ---------------------------~~~~~~a~~~~~v~~i~~~~~~~l~~  109 (211)
T PRK11753         84 ---------------------------RSAWVRAKTACEVAEISYKKFRQLIQ  109 (211)
T ss_pred             ---------------------------ceEEEEEcCcEEEEEEcHHHHHHHHH
Confidence                                       12489999999999999999888654

>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

Probab=98.13  E-value=2.3e-05  Score=63.22  Aligned_cols=96  Identities=25%  Similarity=0.310  Sum_probs=77.9

Q ss_pred             HHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCC
Q psy4847         241 GSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTN  316 (396)
Q Consensus       241 e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~  316 (396)
                      +..+..|+.+..+....+...||..|++.+++.+|++|.+.+..    |++.+.-..++.++||...+....        
T Consensus         7 ~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~--------   78 (115)
T cd00038           7 DEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNG--------   78 (115)
T ss_pred             HHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCC--------
Confidence            45677788777777778888999999999999999999999987    456778888899999998775310        


Q ss_pred             CCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847         317 NSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA  369 (396)
Q Consensus       317 ~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a  369 (396)
                                               -..|+++|.++|++++|++..+...+..
T Consensus        79 -------------------------~~~~~~~a~~~~~~~~i~~~~~~~~~~~  106 (115)
T cd00038          79 -------------------------PRSATVRALTDSELLVLPRSDFRRLLQE  106 (115)
T ss_pred             -------------------------CCCceEEEcCceEEEEEeHHHHHHHHHH
Confidence                                     0134899999999999999999887653

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.11  E-value=2.6e-05  Score=80.14  Aligned_cols=120  Identities=15%  Similarity=0.051  Sum_probs=91.3

Q ss_pred             cccccccccCCC-EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCc
Q psy4847          43 KIVGDVMTKLED-VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSC  121 (396)
Q Consensus        43 ~tV~dIMtp~~d-v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v  121 (396)
                      .++.++|.+... ......+.... +++..|...+.+.+.|++++ ++++|+|+.+++....... ..+.+++   ....
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-~~~~~~~---~~~~  347 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQQ-QGLDAAL---IDAP  347 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhcC-Cchhhhh---ccCC
Confidence            467788854321 12233555666 89999999999999999876 7999999999997543222 2455554   3667


Q ss_pred             eEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847         122 YFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ  178 (396)
Q Consensus       122 ~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~  178 (396)
                      .+|.++++|.+++..|... ... ++|+        |+.|+++|+||..+++..|.+
T Consensus       348 ~~~~~~~~~~~~~~~~~~~-~~~-~~v~--------~~~~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        348 LAVDAQTPLSELLSHVGQA-PCA-VPVV--------DEDQQYVGIISKGMLLRALDR  394 (400)
T ss_pred             ceeCCCCCHHHHHHHHHhC-CCc-EEEE--------CCCCcEEEEEEHHHHHHHHHh
Confidence            8999999999999999984 556 5555        888999999999999999974

>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain

Probab=98.07  E-value=2.1e-05  Score=63.68  Aligned_cols=100  Identities=20%  Similarity=0.227  Sum_probs=79.9

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT  315 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~  315 (396)
                      ++..+..|..+.......+...||+.|++.+++.+|++|.+.+..    |++......+|.++||...+...        
T Consensus         6 ~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~--------   77 (120)
T smart00100        6 DAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTN--------   77 (120)
T ss_pred             CHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccC--------
Confidence            345567777777666677788899999999999999999999986    77889999999999999887720        


Q ss_pred             CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHh
Q psy4847         316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRAT  370 (396)
Q Consensus       316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as  370 (396)
                                             ......+++.+.++|.+..|.+..+.......
T Consensus        78 -----------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  109 (120)
T smart00100       78 -----------------------SRRAASATAVALELATLLRIDFRDFLQLLQEN  109 (120)
T ss_pred             -----------------------CCcccceEEEEEeeEEEEccCHHHHHHHHHHh
Confidence                                   00112348889999999999999988876543

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.

>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

Probab=98.00  E-value=3.4e-05  Score=69.99  Aligned_cols=93  Identities=24%  Similarity=0.269  Sum_probs=75.6

Q ss_pred             HHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847         244 LDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS  319 (396)
Q Consensus       244 L~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~  319 (396)
                      +..+.........+++..||+.|++.+++++|++|.+.+..    |++......||..+||+.++....  +.       
T Consensus        16 ~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~~~--~~-------   86 (214)
T COG0664          16 LELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLGGD--PR-------   86 (214)
T ss_pred             HHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhcCC--Cc-------
Confidence            44444445566677788999999999999999999999998    566788889999999999998621  00       


Q ss_pred             cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847         320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA  369 (396)
Q Consensus       320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a  369 (396)
                                              .++++|++||..+.|++..+.+.+..
T Consensus        87 ------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~  112 (214)
T COG0664          87 ------------------------SASAVALTDVEVLEIPRKDFLELLAE  112 (214)
T ss_pred             ------------------------cceEEEcceEEEEEecHHHHHHHHhh
Confidence                                    23899999999999999999886554

>PRK09392 ftrB transcriptional activator FtrB; Provisional

Probab=97.97  E-value=4.7e-05  Score=71.73  Aligned_cols=96  Identities=20%  Similarity=0.233  Sum_probs=79.7

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE---cCCcceeecCCccchhhhhcccccccCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV---GKENLVYEAGPFSYFGCQALTQNIGIAESPTN  316 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~---G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~  316 (396)
                      ++..+..|+.........++..||+.|++++++.+|++|+|.+..   |++....-.+|+.+||..++....        
T Consensus        19 ~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~~~~~--------   90 (236)
T PRK09392         19 ADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAVVLDA--------   90 (236)
T ss_pred             CHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHHhCCC--------
Confidence            556788888887777788889999999999999999999999976   778888889999999988776410        


Q ss_pred             CCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         317 NSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       317 ~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                         |                      -.+++.|.++|.++.|++..+...+.
T Consensus        91 ---~----------------------~~~~~~A~~~~~~~~i~~~~~~~l~~  117 (236)
T PRK09392         91 ---P----------------------YLMSARTLTRSRVLMIPAELVREAMS  117 (236)
T ss_pred             ---C----------------------CceEEEEcCceEEEEEeHHHHHHHHH
Confidence               0                      13489999999999999998876543

>KOG2550|consensus

Probab=97.91  E-value=3.3e-05  Score=77.98  Aligned_cols=128  Identities=20%  Similarity=0.284  Sum_probs=100.7

Q ss_pred             CHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC--CCcEEEEEEhhhhcccCC
Q psy4847          27 EKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR--RTNIVTMFYIKDLALVDP  104 (396)
Q Consensus        27 ~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~--~~~IVGiL~vkDLl~~~~  104 (396)
                      .+++.+++..+-.|..   .-++-|    +.+.++.++. ++++.-..+||+.+||.++.  ..++||+|+-+|+-+. .
T Consensus        97 pe~QA~~v~~vK~~~~---g~~~~p----~v~sp~~tvg-~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~  167 (503)
T KOG2550|consen   97 PEDQADMVRRVKNYEN---GFINNP----IVISPTTTVG-EVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-E  167 (503)
T ss_pred             HHHHHHHHHHHHHhhc---ccccCC----cccCCcccch-hhhhhcccccccccccccCCcccceeEEEEehhhhhhh-h
Confidence            4566778888866653   333333    4678888888 88888889999999999742  3689999999999877 4


Q ss_pred             ccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHH
Q psy4847         105 DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEE  175 (396)
Q Consensus       105 ~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEe  175 (396)
                      +..+.+.++|.   ...++.+.+.+|.++=+.+++.++..+++|         |+.|+++-||++.|+...
T Consensus       168 ~~~~~~~~vmt---~~~~~~~~gi~l~~~neiL~~~kkGkl~iv---------~~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  168 DNSLLVSDVMT---KNPVTGAQGITLKEANEILKKIKKGKLPVV---------DDKGELVAMLSRTDLMKN  226 (503)
T ss_pred             cccchhhhhcc---cccccccccccHHHHHHHHHhhhcCCccee---------ccCCceeeeeehhhhhhh
Confidence            45577888875   445899999999999999988655667666         778999999999998764

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.83  E-value=0.00018  Score=73.06  Aligned_cols=105  Identities=13%  Similarity=0.136  Sum_probs=82.8

Q ss_pred             EEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHH
Q psy4847          57 MLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQ  136 (396)
Q Consensus        57 ~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~  136 (396)
                      ....+.+.. +++..+...+.....|++++ ++++|++..+++....... ..+.+.+   ...+.+|.++++|.+++..
T Consensus       254 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~  327 (363)
T TIGR01186       254 TKTADKGPR-SALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKKA-QGLQDVL---IDDIYTVDAGTLLRETVRK  327 (363)
T ss_pred             eecCCCCHH-HHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhcC-Cchhhhh---ccCCceECCCCcHHHHHHH
Confidence            445566677 88888988899899999765 7899999999987543221 2344444   3667899999999999999


Q ss_pred             HHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         137 FKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       137 f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      |.+. ... ++|+        |+.|+++|+||..+|++.+.
T Consensus       328 ~~~~-~~~-~~v~--------~~~~~~~g~i~~~~~~~~~~  358 (363)
T TIGR01186       328 VLKA-GIK-VPVV--------DEDQRLVGIVTRGSLVDALY  358 (363)
T ss_pred             HHhC-CCC-EEEE--------CCCCcEEEEEEHHHHHHHHH
Confidence            9985 566 5566        88899999999999999986

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial

Probab=97.74  E-value=0.00012  Score=66.44  Aligned_cols=78  Identities=18%  Similarity=0.102  Sum_probs=63.4

Q ss_pred             ccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCCCCCcccccCCCcccccccc
Q psy4847         260 KSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDS  335 (396)
Q Consensus       260 ~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  335 (396)
                      ..||+.|++++++.+|++|+|++..    |+|-...-.||..+||..++...                            
T Consensus         2 ~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~----------------------------   53 (193)
T TIGR03697         2 KTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITG----------------------------   53 (193)
T ss_pred             CceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccC----------------------------
Confidence            3589999999999999999999887    88888888999999998776641                            


Q ss_pred             cCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         336 ILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       336 ~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                         ..+..-|+++|.+||.++.|++..+...+.
T Consensus        54 ---~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~   83 (193)
T TIGR03697        54 ---HRSDRFYHAVAFTRVELLAVPIEQVEKAIE   83 (193)
T ss_pred             ---CCCccceEEEEecceEEEEeeHHHHHHHHH
Confidence               000012478999999999999999887653

Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.

>PRK10402 DNA-binding transcriptional activator YeiL; Provisional

Probab=97.73  E-value=0.00011  Score=69.15  Aligned_cols=87  Identities=14%  Similarity=0.147  Sum_probs=70.5

Q ss_pred             HhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCCCCCcccc
Q psy4847         248 TQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQA  323 (396)
Q Consensus       248 l~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~  323 (396)
                      .+.......++...|+..|++++++.+|++|.|.|..    |++-+..-.+|..+||..++...     .+         
T Consensus        28 ~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~-----~~---------   93 (226)
T PRK10402         28 SADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDK-----DH---------   93 (226)
T ss_pred             HhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcC-----CC---------
Confidence            3344556677888999999999999999999999987    88889999999999999876541     00         


Q ss_pred             cCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847         324 YGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK  367 (396)
Q Consensus       324 ~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al  367 (396)
                                         ..+++.|+++|..+.|++..+...+
T Consensus        94 -------------------~~~~~~A~~~~~i~~i~~~~~~~ll  118 (226)
T PRK10402         94 -------------------ETKAVQAIEECWCLALPMKDCRPLL  118 (226)
T ss_pred             -------------------CCccEEEeccEEEEEEEHHHHHHHH
Confidence                               1248999999999999998766544

>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional

Probab=97.67  E-value=0.00025  Score=66.70  Aligned_cols=95  Identities=13%  Similarity=0.013  Sum_probs=73.4

Q ss_pred             cHHHHHHHHhcCC-CCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCC
Q psy4847         240 VGSLLDRITQKGT-SQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESP  314 (396)
Q Consensus       240 ~e~vL~~Ll~~~~-v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~  314 (396)
                      ++..+.+|++... .....|+..||+.|++++++++|++|.|.+..    |++....-.+|..+||..++...       
T Consensus        25 ~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~~~~-------   97 (235)
T PRK11161         25 NEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGSG-------   97 (235)
T ss_pred             CHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccccCC-------
Confidence            4555667765543 34567888999999999999999999999887    77778888899999997554320       


Q ss_pred             CCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         315 TNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       315 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                                                 .+.++++|++++.++.|++..+...+.
T Consensus        98 ---------------------------~~~~~~~a~~~~~i~~ip~~~f~~l~~  124 (235)
T PRK11161         98 ---------------------------QHPSFAQALETSMVCEIPFETLDDLSG  124 (235)
T ss_pred             ---------------------------CCcceEEEeccEEEEEEEHHHHHHHHH
Confidence                                       011278999999999999998877543

>KOG0474|consensus

Probab=97.64  E-value=5.1e-05  Score=80.05  Aligned_cols=126  Identities=21%  Similarity=0.294  Sum_probs=93.6

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCC----cEEEEEEhhhhcc-------cCC--c-
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRT----NIVTMFYIKDLAL-------VDP--D-  105 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~----~IVGiL~vkDLl~-------~~~--~-  105 (396)
                      ++..+|+|||.+  .+++++.-..+. .+++.+..+.|..+||+|+..+    .+.|+|-.+.|+.       ...  . 
T Consensus       579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~  655 (762)
T KOG0474|consen  579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST  655 (762)
T ss_pred             hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence            577899999997  499999999998 8888889999999999986433    6778877766641       100  0 


Q ss_pred             ----------------cccchh-------------hhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCC
Q psy4847         106 ----------------DNTPLK-------------TLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGE  156 (396)
Q Consensus       106 ----------------~~~~l~-------------~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~  156 (396)
                                      ...+++             ++-.||+..+++|++++++..++..|+.=.-.|+.+|-       
T Consensus       656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~-------  728 (762)
T KOG0474|consen  656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVP-------  728 (762)
T ss_pred             cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEec-------
Confidence                            000111             24445677789999999999999999985466777774       


Q ss_pred             CCCCCceeeeecHHHHH-HHHH
Q psy4847         157 GDPFYETVGLITLEDVI-EELI  177 (396)
Q Consensus       157 ~De~g~~vGIVTleDIi-Eeli  177 (396)
                        ...+++||+|+.|+. +.+.
T Consensus       729 --~~~~~~gilTR~D~~~~~~l  748 (762)
T KOG0474|consen  729 --KTNRVVGILTRKDLARYRIL  748 (762)
T ss_pred             --CCCceeEEEehhhhhhHHHh
Confidence              445779999999998 4443

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=97.62  E-value=0.00012  Score=60.39  Aligned_cols=74  Identities=12%  Similarity=0.153  Sum_probs=56.5

Q ss_pred             cCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        23 ~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .|.++..+..-+.. -+..+.+|.++|++.  +.++..++++. ++++.|.+++..++||++++ ++++|+|+..|++.
T Consensus        37 ~G~v~~~dl~~~~~-~~~~~~~v~~~~~~~--~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~  110 (111)
T cd04603          37 LGQVTLSDLLEIGP-NDYETLKVCEVYIVP--VPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR  110 (111)
T ss_pred             EEEEEHHHHHhhcc-ccccccChhheeecC--CcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence            35566655432211 012345799999754  67899999999 99999999999999999865 78999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=97.57  E-value=0.0003  Score=78.60  Aligned_cols=97  Identities=18%  Similarity=0.220  Sum_probs=78.2

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE---cCCcceeecCCccchhhhhcccccccCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV---GKENLVYEAGPFSYFGCQALTQNIGIAESPTN  316 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~---G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~  316 (396)
                      ++..+..|.........++...+|..|++.+.+++|++|+|++..   |+|...-..+|.++||+.++...  .++    
T Consensus       386 s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~FGE~~~l~~--~p~----  459 (823)
T PLN03192        386 SREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIFGEVGALCC--RPQ----  459 (823)
T ss_pred             CHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcceeeEEccCCCEecchHHhcC--CCC----
Confidence            456666666665555566777899999999999999999999976   66677788999999999998751  100    


Q ss_pred             CCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847         317 NSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA  369 (396)
Q Consensus       317 ~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a  369 (396)
                                                 .||+|+.++|+.+.|+|+.+++++..
T Consensus       460 ---------------------------~~t~ra~~~s~ll~l~~~~f~~ll~~  485 (823)
T PLN03192        460 ---------------------------SFTFRTKTLSQLLRLKTSTLIEAMQT  485 (823)
T ss_pred             ---------------------------CCeEEEcccEEEEEEEHHHHHHHHHH
Confidence                                       25999999999999999999997763

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.54  E-value=0.00019  Score=59.71  Aligned_cols=61  Identities=15%  Similarity=0.290  Sum_probs=51.7

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCC--CcEEEEEEhhhhcc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRR--TNIVTMFYIKDLAL  101 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~--~~IVGiL~vkDLl~  101 (396)
                      +...++.++|+...++.+++.++++. ++++.|.++++..+||++++.  ++++|+|+..||+.
T Consensus        55 ~~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          55 LQKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             ccCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            34677899998534578999999999 999999999999999998652  58999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=97.54  E-value=0.00016  Score=59.36  Aligned_cols=76  Identities=17%  Similarity=0.234  Sum_probs=57.4

Q ss_pred             cCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        23 ~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .|.+...+....... ...+.++.++|.+...+.++..++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.
T Consensus        38 ~G~v~~~dl~~~~~~-~~~~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~~-~~~~Gvl~~~di~~  113 (114)
T cd04801          38 VGIISLADLRAIPTS-QWAQTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVEDS-GQVIGLITEADLLR  113 (114)
T ss_pred             EEEEEHHHHHHHHHh-hccccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcCC-CcEEEEEeccceec
Confidence            344665553322111 123568999998755567899999999 99999999999999999764 78999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PLN02868 acyl-CoA thioesterase family protein

Probab=97.47  E-value=0.00058  Score=70.35  Aligned_cols=108  Identities=19%  Similarity=0.222  Sum_probs=81.5

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcC---CcceeecCCccchhhhhcccccccCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGK---ENLVYEAGPFSYFGCQALTQNIGIAESPTN  316 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~---e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~  316 (396)
                      ++..+.+|+.+.......+...||++|++++++++|++|+|+|..-.   +......+|..+||+. |..      .+  
T Consensus        20 ~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~-l~~------~~--   90 (413)
T PLN02868         20 PSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG-LSG------SV--   90 (413)
T ss_pred             CHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh-hCC------CC--
Confidence            56678889988888888899999999999999999999999998721   5567778999999964 321      00  


Q ss_pred             CCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHhhhhhccCCcccCC
Q psy4847         317 NSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLMEKSKKSEESMS  383 (396)
Q Consensus       317 ~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as~~~~~~~~~~~~~  383 (396)
                                                ..++++|.++|..+.|++..++...-.+.. .+.+.|+.|.
T Consensus        91 --------------------------~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~-~~~~~~~~~~  130 (413)
T PLN02868         91 --------------------------HSADVVAVSELTCLVLPHEHCHLLSPKSIW-DSDKTPKDCS  130 (413)
T ss_pred             --------------------------cccEEEECCCEEEEEEcHHHHhhhcccccc-cccCChhhHH
Confidence                                      123899999999999999987765543333 3344444343

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=97.45  E-value=0.00039  Score=56.69  Aligned_cols=75  Identities=21%  Similarity=0.279  Sum_probs=59.0

Q ss_pred             cCCCCHHH-HHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          23 FNDLEKDE-VNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        23 ~~~l~~~E-~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .|.+...+ .+.+....++...++.++|.+.  +.+++.++++. ++++.+.+++...+||++++ ++++|+|+..||+.
T Consensus        38 ~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~  113 (114)
T cd04604          38 VGIFTDGDLRRALEKGLDILTLPVADVMTRN--PKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDLLR  113 (114)
T ss_pred             EEEechHHHHHHHhccCccccCCHHHhhccC--CeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence            44466555 3344444455556899999865  67899999999 99999999999999999765 89999999999864

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=97.44  E-value=5.5e-05  Score=78.81  Aligned_cols=113  Identities=14%  Similarity=0.192  Sum_probs=85.0

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCC
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNS  120 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~  120 (396)
                      .+.+|+++|++.  +++++.++++. ++++.|.++++..+||++++ |+++|+|+.+|++..-..+  ..++++.   ..
T Consensus       193 ~~~~v~~im~~~--~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~--~~ed~~~---~~  263 (449)
T TIGR00400       193 PEEILSSIMRSS--VFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE--ATEDFYM---IA  263 (449)
T ss_pred             CCCcHHHHhCCC--CeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh--hHHHHHH---hc
Confidence            567899999874  78899999999 99999999999999999765 7899999999998654333  2355554   23


Q ss_pred             ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHH
Q psy4847         121 CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL  176 (396)
Q Consensus       121 v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEel  176 (396)
                      .....++..+.+++..|-++ +....+|.            .+.|++| ..|+...
T Consensus       264 gv~~~~~~~l~~~~~~~~~~-R~~wL~v~------------~~~~~~t-~~ii~~f  305 (449)
T TIGR00400       264 AVKPLDDSYFDTSILVMAKN-RIIWLLVL------------LVSSTFT-ATIISNY  305 (449)
T ss_pred             CCCCCcchhhhchHHHHHHh-ccchHHHH------------HHHHHHH-HHHHHHH
Confidence            33333567778888888774 66666663            5788888 6676654

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.43  E-value=0.00028  Score=58.30  Aligned_cols=75  Identities=20%  Similarity=0.193  Sum_probs=57.2

Q ss_pred             cCCCCHHHHHHHHHH--hcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847          23 FNDLEKDEVNIISGA--LELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA  100 (396)
Q Consensus        23 ~~~l~~~E~~~i~~a--lel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl  100 (396)
                      .|.++..+.......  ....+.++.++|..  ++.++..++++. ++++.|.+++..++||++++ ++++|+|+.+|++
T Consensus        37 ~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~  112 (114)
T cd04619          37 AGVLTKTDVVRQMGRCGGPGCTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDAL  112 (114)
T ss_pred             EEEEehHHHHHHHhhcCCCcccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhc
Confidence            345666654321111  12345679999975  377899999999 99999999999999999765 7899999999986


Q ss_pred             c
Q psy4847         101 L  101 (396)
Q Consensus       101 ~  101 (396)
                      .
T Consensus       113 ~  113 (114)
T cd04619         113 K  113 (114)
T ss_pred             c
Confidence            4

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.42  E-value=0.00036  Score=58.32  Aligned_cols=72  Identities=17%  Similarity=0.212  Sum_probs=56.3

Q ss_pred             CCCCHHHHHHHHHHhcc------cc--cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEE
Q psy4847          24 NDLEKDEVNIISGALEL------RR--KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFY   95 (396)
Q Consensus        24 ~~l~~~E~~~i~~alel------~~--~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~   95 (396)
                      |.++.+. +++...+.+      .+  .+|+++|.+.  +..++.++++. ++++.|.+.++..+||++++ ++++|+|+
T Consensus        32 g~~n~e~-~~vl~~~~~~~p~ll~~v~~~v~dim~~~--~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt  106 (113)
T cd04597          32 GEPNPQT-RYVLEYLGIEPPILLADVHPRVRDVINRK--PVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIIT  106 (113)
T ss_pred             CCCCHHH-HHHHHHcCCCCchhhcchhhhHHHhcCCC--CCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEE
Confidence            4455544 444444432      22  6799999864  77899999999 99999999999999999765 78999999


Q ss_pred             hhhhc
Q psy4847          96 IKDLA  100 (396)
Q Consensus        96 vkDLl  100 (396)
                      .+||.
T Consensus       107 ~~dl~  111 (113)
T cd04597         107 LLDLA  111 (113)
T ss_pred             HHHhh
Confidence            99986

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK13918 CRP/FNR family transcriptional regulator; Provisional

Probab=97.41  E-value=0.00043  Score=63.36  Aligned_cols=74  Identities=18%  Similarity=0.169  Sum_probs=60.5

Q ss_pred             CCCccccccccCc--ccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCCCCCcccccCCCc
Q psy4847         255 QKPTFKSLKKRNK--PVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSL  328 (396)
Q Consensus       255 ~~~~~~~LY~~g~--~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~~s~  328 (396)
                      ...+...||..|+  +++++++|++|+|.+..    |+|-...-.+|..+||..++...      +              
T Consensus        10 ~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~~~------~--------------   69 (202)
T PRK13918         10 TYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALAGA------E--------------   69 (202)
T ss_pred             EecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhcCC------C--------------
Confidence            3456778999999  78999999999999987    88888888999999998765420      0              


Q ss_pred             ccccccccCCcccccCcEEEEcCCeEEEEEeHHH
Q psy4847         329 QSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSF  362 (396)
Q Consensus       329 ~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~  362 (396)
                                    ..|++.|++||+.+.|++..
T Consensus        70 --------------~~~~~~A~~~~~v~~i~~~~   89 (202)
T PRK13918         70 --------------RAYFAEAVTDSRIDVLNPAL   89 (202)
T ss_pred             --------------CCceEEEcCceEEEEEEHHH
Confidence                          12489999999999998654

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=97.36  E-value=0.00044  Score=56.69  Aligned_cols=55  Identities=15%  Similarity=0.274  Sum_probs=48.8

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA  100 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl  100 (396)
                      +.++.++|.+.  +.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++
T Consensus        57 ~~~v~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~  111 (113)
T cd04607          57 DDPVSEVMNRN--PITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLATLDDLL  111 (113)
T ss_pred             CCCHHHhhcCC--CEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhc
Confidence            45799999754  67899999999 99999999999999999765 7899999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK09391 fixK transcriptional regulator FixK; Provisional

Probab=97.32  E-value=0.00087  Score=63.30  Aligned_cols=80  Identities=16%  Similarity=0.175  Sum_probs=64.7

Q ss_pred             CCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCCCCCcccccCCC
Q psy4847         252 TSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGS  327 (396)
Q Consensus       252 ~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~~s  327 (396)
                      ......+...||.+|+++++|++|++|+|.+..    |+|.+..-.+|..+||...  .                     
T Consensus        39 ~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~--~---------------------   95 (230)
T PRK09391         39 SEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLES--G---------------------   95 (230)
T ss_pred             eeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccC--C---------------------
Confidence            455567778899999999999999999999987    8887777789999999421  0                     


Q ss_pred             cccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847         328 LQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK  367 (396)
Q Consensus       328 ~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al  367 (396)
                                 ..|  .|+++|++||.++.|+++.+...+
T Consensus        96 -----------~~~--~~~~~A~~ds~v~~i~~~~f~~l~  122 (230)
T PRK09391         96 -----------STH--RFTAEAIVDTTVRLIKRRSLEQAA  122 (230)
T ss_pred             -----------CcC--CeEEEEcCceEEEEEEHHHHHHHH
Confidence                       001  268999999999999999877654

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.23  E-value=0.00058  Score=56.10  Aligned_cols=57  Identities=26%  Similarity=0.349  Sum_probs=49.9

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ...++.++|.+.  +.+++.++++. +++..+.+.+.+++||++++ ++++|+|+.+|++.
T Consensus        65 ~~~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~  121 (122)
T cd04585          65 SKIKVSDIMTRD--PITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR  121 (122)
T ss_pred             cccCHHHhccCC--CeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence            357799999763  78899999999 99999999999999999764 79999999999864

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.21  E-value=0.00075  Score=54.93  Aligned_cols=46  Identities=11%  Similarity=0.159  Sum_probs=41.7

Q ss_pred             EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      +.++.+++++. ++++.|.+++..++||++++.++++|+|+.+|++.
T Consensus        52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            67899999999 99999999999999999865478999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.20  E-value=0.00062  Score=55.48  Aligned_cols=75  Identities=15%  Similarity=0.293  Sum_probs=56.2

Q ss_pred             cCCCCHHHHH--HHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847          23 FNDLEKDEVN--IISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA  100 (396)
Q Consensus        23 ~~~l~~~E~~--~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl  100 (396)
                      -|.++..+..  .+..-......++.++|.+.  +.+++.++++. ++++.+.+++..++||++++ ++++|+|+.+|++
T Consensus        36 ~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~  111 (113)
T cd04587          36 VGIFTSKDIALRVVAQGLDPESTLVERVMTPN--PVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLT  111 (113)
T ss_pred             EEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCC--CeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhc
Confidence            4446665542  22221222236799999754  67899999999 99999999999999999765 7899999999987


Q ss_pred             c
Q psy4847         101 L  101 (396)
Q Consensus       101 ~  101 (396)
                      .
T Consensus       112 ~  112 (113)
T cd04587         112 H  112 (113)
T ss_pred             c
Confidence            4

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=97.19  E-value=0.00075  Score=54.44  Aligned_cols=56  Identities=18%  Similarity=0.354  Sum_probs=49.0

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      +..++++|.+.  +.+++.++++. ++++.|.+++..++||++++ |+++|+++.+|++.
T Consensus        51 ~~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~  106 (107)
T cd04610          51 DETVEEIMSKD--LVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR  106 (107)
T ss_pred             cccHHHhCCCC--CeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence            45799999765  67899999999 99999999999999999765 78999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.18  E-value=0.00057  Score=72.22  Aligned_cols=62  Identities=21%  Similarity=0.269  Sum_probs=55.1

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD  103 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~  103 (396)
                      ..+.+|+++|++..+++++++++++. ++++.|.+++..++||++++ ++++|+|+.+||+...
T Consensus       158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHK  219 (502)
T ss_pred             CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcc
Confidence            45678999999866789999999999 99999999999999999765 7899999999998643

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.14  E-value=0.0012  Score=53.14  Aligned_cols=69  Identities=17%  Similarity=0.163  Sum_probs=54.0

Q ss_pred             cCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        23 ~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .|.++..+...   +.   ..++.++|++.  +.+++.++++. ++++.|.+.++..+||++++ ++++|+|+.+||+.
T Consensus        37 ~Giv~~~dl~~---~~---~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~  105 (106)
T cd04582          37 LGFVTRREAAR---AS---GGCCGDHAEPF--KVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD  105 (106)
T ss_pred             EEEEeHHHHHH---hc---ccchhhhcccC--CEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            34466555432   21   23588999865  67799999999 99999999999999999765 78999999999863

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.14  E-value=0.00056  Score=57.58  Aligned_cols=61  Identities=26%  Similarity=0.291  Sum_probs=47.9

Q ss_pred             ccccccccccccCCCEEEEe----CCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLS----YDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~----~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ..+.+|+++|++...+..++    .++++. ++++.|.+++..++||++++.++++|+|+..||+.
T Consensus        61 ~~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          61 RSELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             chheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            34567999997643333443    578888 99999999999999999864358999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.12  E-value=0.0014  Score=44.16  Aligned_cols=47  Identities=32%  Similarity=0.280  Sum_probs=39.7

Q ss_pred             ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHH
Q psy4847         121 CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL  176 (396)
Q Consensus       121 v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEel  176 (396)
                      ++++++++++.+++..|.+. +.+.++|+        ++.++++|+++..|++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~-~~~~~~v~--------~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREH-GIRRLPVV--------DEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHh-CCCcccEE--------CCCCeEEEEEEHHHHHHhh
Confidence            56789999999999999985 66777777        6668999999999998764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.12  E-value=0.001  Score=53.98  Aligned_cols=55  Identities=22%  Similarity=0.400  Sum_probs=48.8

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ..++.++|.+.  +.+++.+.++. ++++.+.+.++.++||+++  ++++|+|+.+|++.
T Consensus        58 ~~~~~~~~~~~--~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  112 (113)
T cd04623          58 DTPVSEIMTRN--VITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK  112 (113)
T ss_pred             ccCHHHhcCCC--cEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence            56899999763  78899999999 9999999999999999976  78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.12  E-value=0.00096  Score=54.36  Aligned_cols=56  Identities=18%  Similarity=0.237  Sum_probs=48.8

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .+.++.++|.+.  +.+++.++++. ++++.|.+++..++||+++  ++++|+|+.+||+.
T Consensus        56 ~~~~v~~~~~~~--~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~  111 (112)
T cd04625          56 LDTTVRAIMNPE--PIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK  111 (112)
T ss_pred             hcCCHHHHhCCC--CeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence            456799999754  77899999999 9999999999999999974  78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.12  E-value=0.001  Score=55.47  Aligned_cols=51  Identities=20%  Similarity=0.285  Sum_probs=44.4

Q ss_pred             ccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847          46 GDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA  100 (396)
Q Consensus        46 ~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl  100 (396)
                      .++|.+  ++.+++.++++. ++++.|.+++.+++||++++ ++++|+|+..|+.
T Consensus        71 ~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~  121 (123)
T cd04627          71 LTIGTS--DVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR  121 (123)
T ss_pred             cccCcC--CceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence            356764  478999999999 99999999999999999765 7899999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.12  E-value=0.0017  Score=68.53  Aligned_cols=58  Identities=22%  Similarity=0.396  Sum_probs=50.9

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      ..++.++|++ ..+++++.+.++. ++++.|.++++..+||++++ ++++|+|+.+||+..
T Consensus       146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~  203 (486)
T PRK05567        146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKA  203 (486)
T ss_pred             CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhh
Confidence            4579999984 3478999999999 99999999999999999866 799999999999753

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.10  E-value=0.0011  Score=53.93  Aligned_cols=75  Identities=19%  Similarity=0.291  Sum_probs=56.7

Q ss_pred             CCCCHHHHHHHH-HHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          24 NDLEKDEVNIIS-GALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        24 ~~l~~~E~~~i~-~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      |.+...+..... ........++.++|.+.  +.++++++++. ++++.|.+.+...+||++++.++++|+++.+|++.
T Consensus        38 G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          38 GIVSLDDIREILFDPSLYDLVVASDIMTKP--PVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             EEEEHHHHHHHHhcccccccEEHHHhccCC--CcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            446666654321 11122347899999865  78899999999 99999999999999999762378999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=97.10  E-value=0.00099  Score=55.32  Aligned_cols=57  Identities=25%  Similarity=0.402  Sum_probs=49.7

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ...+++++|.+.  +.+++.++++. ++++.|.+.+..++||++++ ++++|+++.+|++.
T Consensus        67 ~~~~i~~~~~~~--~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~  123 (124)
T cd04600          67 KPETVGDIMSPP--VVTVRPDTPIA-ELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIA  123 (124)
T ss_pred             ccccHHHhccCC--CeeeCCCCcHH-HHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhc
Confidence            345799999754  78999999999 99999999999999999754 78999999999864

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.08  E-value=0.0013  Score=53.51  Aligned_cols=73  Identities=16%  Similarity=0.283  Sum_probs=55.5

Q ss_pred             cCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847          23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA  100 (396)
Q Consensus        23 ~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl  100 (396)
                      .|.++..+.......-...+.++.++|.+  .+..+..++++. ++++.|.+++..++||+++  ++++|+|+..|++
T Consensus        37 ~G~v~~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~  109 (111)
T cd04626          37 KGVVTFTDILDLDLFESFLEKKVFNIVSQ--DVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDIL  109 (111)
T ss_pred             EEEEehHHhHHHHhhcccccCcHHHHhcC--CcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhc
Confidence            34466665443222111235679999975  378899999999 9999999999999999976  7899999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.08  E-value=0.0011  Score=53.99  Aligned_cols=57  Identities=16%  Similarity=0.246  Sum_probs=50.0

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .+.++.++|.+.  +.+++.+.++. ++++.+.+++...+||++++ ++++|+++.+|++.
T Consensus        51 ~~~~v~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~  107 (108)
T cd04596          51 PDTTIEKVMTKN--PITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK  107 (108)
T ss_pred             ccccHHHHhcCC--CeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence            466899999754  78899999999 99999999999999999765 78999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.04  E-value=0.0013  Score=53.70  Aligned_cols=74  Identities=18%  Similarity=0.256  Sum_probs=56.8

Q ss_pred             cCCCCHHHHHH--HHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847          23 FNDLEKDEVNI--ISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA  100 (396)
Q Consensus        23 ~~~l~~~E~~~--i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl  100 (396)
                      .|-++..+...  +.+. .+.+.++.++|.+.  +.+++.++++. ++++.+.+++..++||++++ ++++|+++..||+
T Consensus        37 ~G~v~~~dl~~~~~~~~-~~~~~~i~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~  111 (113)
T cd04615          37 VGIITRYDVLSYALESE-ELKDAKVREVMNSP--VITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTEDDIL  111 (113)
T ss_pred             EEEEEHHHHHHhhhhhh-hhcCCcHHHhccCC--ceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhh
Confidence            44456666532  2221 24567899999754  78899999999 99999999999999999765 7999999999986


Q ss_pred             c
Q psy4847         101 L  101 (396)
Q Consensus       101 ~  101 (396)
                      .
T Consensus       112 ~  112 (113)
T cd04615         112 R  112 (113)
T ss_pred             c
Confidence            3

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.04  E-value=0.0013  Score=56.67  Aligned_cols=55  Identities=20%  Similarity=0.326  Sum_probs=48.8

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      +.+|+++|++.  +.++++++++. ++++.|.+.++.++||+++  ++++|+|+..|++.
T Consensus        80 ~~~v~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~  134 (135)
T cd04621          80 PLVAEDIMTEE--IITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR  134 (135)
T ss_pred             cccHHHhcCCC--CeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence            56899999864  67899999999 9999999999999999975  78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.03  E-value=0.0016  Score=54.42  Aligned_cols=53  Identities=21%  Similarity=0.104  Sum_probs=43.1

Q ss_pred             hhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         113 LCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       113 v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      +.++|.+++.++.+++++.++++.|.+. +.+.++|+        |+.|+++|+||..||.+
T Consensus        60 v~dim~~~~~~v~~~~~l~~a~~~~~~~-~~~~lpVv--------d~~~~l~Givt~~dl~~  112 (113)
T cd04597          60 VRDVINRKPVTARPNDPLREALNLMHEH-NIRTLPVV--------DDDGTPAGIITLLDLAE  112 (113)
T ss_pred             HHHhcCCCCCEECCcCcHHHHHHHHHHc-CCCEEEEE--------CCCCeEEEEEEHHHhhc
Confidence            3334457888999999999999999985 56667777        77789999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.03  E-value=0.0013  Score=55.78  Aligned_cols=53  Identities=25%  Similarity=0.394  Sum_probs=47.5

Q ss_pred             ccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          44 IVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        44 tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ++.++|.+.  +..++.++++. +++..|.+.+..++||+++  ++++|+++.+|++.
T Consensus        79 ~v~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~  131 (132)
T cd04636          79 KVEEIMTKK--VITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR  131 (132)
T ss_pred             CHHHhccCC--ceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence            789999753  78899999999 9999999999999999976  79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.02  E-value=0.0015  Score=53.60  Aligned_cols=75  Identities=15%  Similarity=0.236  Sum_probs=54.4

Q ss_pred             cCCCCHHHHHHHH-HHhcccccccccccccCCCEEEEeCC--CChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhh
Q psy4847          23 FNDLEKDEVNIIS-GALELRRKIVGDVMTKLEDVYMLSYD--AILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL   99 (396)
Q Consensus        23 ~~~l~~~E~~~i~-~alel~~~tV~dIMtp~~dv~~l~~d--~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDL   99 (396)
                      .|.+...+..... .-....+.++.++|.+.  +.+++++  +++. ++++.|.+++..++||++++ ++++|+|+.+|+
T Consensus        37 ~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~--~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl  112 (115)
T cd04620          37 LGIFTERDIVRLTAIGKDLSDLPIGEVMTQP--VVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESI  112 (115)
T ss_pred             EEEEeHHHHHHHHhcCCCccccCHHHhcCCC--cEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHh
Confidence            3446655543211 11122346799999753  6778876  6777 89999999999999999765 789999999998


Q ss_pred             cc
Q psy4847         100 AL  101 (396)
Q Consensus       100 l~  101 (396)
                      +.
T Consensus       113 ~~  114 (115)
T cd04620         113 RQ  114 (115)
T ss_pred             hc
Confidence            74

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.01  E-value=0.00028  Score=75.14  Aligned_cols=58  Identities=26%  Similarity=0.355  Sum_probs=51.5

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ...+|+++|+. .++.+++.++++. ++.+.|.++++..+||++++ |+++|+|+.+||+.
T Consensus       244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~  301 (546)
T PRK14869        244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLS  301 (546)
T ss_pred             cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhc
Confidence            36789999983 3488999999999 99999999999999999865 89999999999975

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.99  E-value=0.0013  Score=54.60  Aligned_cols=56  Identities=20%  Similarity=0.335  Sum_probs=49.2

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ..++.++|.+.  +.+++.++++. ++++.+.+.+...+||.+++ ++++|+|+.+|++.
T Consensus        69 ~~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~  124 (125)
T cd04631          69 NEPVRSIMTRN--VITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK  124 (125)
T ss_pred             hcCHHHHhcCC--ceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence            45789999754  88999999999 99999999999999999765 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=96.98  E-value=0.0013  Score=65.43  Aligned_cols=74  Identities=12%  Similarity=0.181  Sum_probs=57.5

Q ss_pred             CCCCHHHHHHHH-HHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          24 NDLEKDEVNIIS-GALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        24 ~~l~~~E~~~i~-~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      |.++..+...+. .-..+.+.+|+++|++.  +.++.+++++. ++++.|.+++..++||+++  ++++|+|+..|++..
T Consensus       249 Givt~~Dl~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~  323 (326)
T PRK10892        249 GIFTDGDLRRVFDMGIDLRQASIADVMTPG--GIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA  323 (326)
T ss_pred             EEEecHHHHHHHhcCCCcccCCHHHhcCCC--CEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence            456665643211 11134567899999864  78999999999 9999999999999999974  689999999999754

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=96.96  E-value=0.0017  Score=52.13  Aligned_cols=56  Identities=27%  Similarity=0.369  Sum_probs=49.2

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .+.++.++|.+.  +.+++.++++. ++++.|.+++...+||+++  ++++|+|+.+|+++
T Consensus        49 ~~~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~~  104 (105)
T cd04599          49 PNRLVADAMTRE--VVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIAL  104 (105)
T ss_pred             ccCCHHHHccCC--CEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhcc
Confidence            346799999754  78999999999 9999999999999999975  79999999999863

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.96  E-value=0.0017  Score=53.35  Aligned_cols=57  Identities=23%  Similarity=0.316  Sum_probs=49.6

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ..+.++.++|.+  ++.+++.++++. ++++.|.+.+...+||+++  ++++|+|+..|++.
T Consensus        57 ~~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~  113 (114)
T cd04630          57 PDRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL  113 (114)
T ss_pred             CCccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence            345679999964  478999999999 9999999999999999976  78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=96.95  E-value=0.0018  Score=52.31  Aligned_cols=56  Identities=21%  Similarity=0.357  Sum_probs=46.7

Q ss_pred             ccccccccccCCCEEEEeC-CCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          42 RKIVGDVMTKLEDVYMLSY-DAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~-d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      +.++.++|.+.  +..+.. ++++. ++++.|.+.++.++||++++ ++++|+|+.+|++.
T Consensus        53 ~~~v~~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~  109 (110)
T cd04601          53 DKPVSEVMTPE--NLLTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK  109 (110)
T ss_pred             CCCHHHhcccC--ceEEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence            46899999654  345556 89998 99999999999999999765 78999999999863

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=96.94  E-value=0.0023  Score=61.48  Aligned_cols=59  Identities=31%  Similarity=0.279  Sum_probs=51.1

Q ss_pred             chhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhcc
Q psy4847         109 PLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAE  180 (396)
Q Consensus       109 ~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~e  180 (396)
                      +++.+|   .+++.++.+++++.++.+.|-+. ..+=|+|+        |. ++++||+|+.||.++|.+|.
T Consensus       173 ~V~~~~---s~~~i~v~~d~tl~eaak~f~~~-~i~GaPVv--------d~-dk~vGiit~~dI~~aia~g~  231 (294)
T COG2524         173 KVKNLM---SKKLITVRPDDTLREAAKLFYEK-GIRGAPVV--------DD-DKIVGIITLSDIAKAIANGN  231 (294)
T ss_pred             hhhhhc---cCCceEecCCccHHHHHHHHHHc-CccCCcee--------cC-CceEEEEEHHHHHHHHHcCC
Confidence            445554   58999999999999999999994 89999998        54 59999999999999999763

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.94  E-value=0.0018  Score=52.65  Aligned_cols=75  Identities=24%  Similarity=0.339  Sum_probs=55.6

Q ss_pred             cCCCCHHHHH--HHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847          23 FNDLEKDEVN--IISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA  100 (396)
Q Consensus        23 ~~~l~~~E~~--~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl  100 (396)
                      .|.++..+..  .+..-......++.++|.+.  +..++.++++. ++++.+.+.+..++||++++ ++++|+|+.+|++
T Consensus        36 ~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~  111 (113)
T cd04622          36 VGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRG--VVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLA  111 (113)
T ss_pred             EEEEEhHHHHHHHhhccCCcccCCHHHhccCC--ccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhh
Confidence            3445655532  22222233344599999754  77899999999 99999999999999999764 7899999999986


Q ss_pred             c
Q psy4847         101 L  101 (396)
Q Consensus       101 ~  101 (396)
                      .
T Consensus       112 ~  112 (113)
T cd04622         112 R  112 (113)
T ss_pred             c
Confidence            4

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=96.91  E-value=0.0018  Score=53.35  Aligned_cols=57  Identities=25%  Similarity=0.248  Sum_probs=50.1

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ....++.++|.+.  +.+++.++++. ++++.+.+.+++.+||+++  ++++|+|+.+|++.
T Consensus        64 ~~~~~v~~~~~~~--~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~  120 (121)
T cd04584          64 LLKMPVKEIMTKD--VITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR  120 (121)
T ss_pred             hcCcCHHHHhhCC--CeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence            4567899999864  78999999999 9999999999999999975  78999999999864

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>KOG0475|consensus

Probab=96.90  E-value=0.0044  Score=65.92  Aligned_cols=119  Identities=19%  Similarity=0.282  Sum_probs=85.0

Q ss_pred             ccccccccCC---CEEEEeCC-CChhHHHHHHHHHcCCcEEEEE-eCCCCcEEEEEEhhhhccc----------------
Q psy4847          44 IVGDVMTKLE---DVYMLSYD-AILDFETVSEIMKSGYSRIPVY-EDRRTNIVTMFYIKDLALV----------------  102 (396)
Q Consensus        44 tV~dIMtp~~---dv~~l~~d-~~l~~e~i~~i~~~g~sriPV~-~~~~~~IVGiL~vkDLl~~----------------  102 (396)
                      -..++|.|..   ....++.+ .+++ +....|.++.|+.+||+ +++....+|++..+||...                
T Consensus       544 ~~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~  622 (696)
T KOG0475|consen  544 LAIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI  622 (696)
T ss_pred             hhhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc
Confidence            3445555443   24555554 7888 88888899999999988 4566789999999998420                


Q ss_pred             ---CCc--------cccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHH
Q psy4847         103 ---DPD--------DNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLED  171 (396)
Q Consensus       103 ---~~~--------~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleD  171 (396)
                         ++.        ....++++++   -.+.+|...+|...+++.|++- ...-..|         +.+|++.|+||..|
T Consensus       623 ~f~~~~~~~~~~~~~~~~lk~il~---~tp~tv~d~tp~~~v~~~F~~l-g~~~~~v---------~~~G~l~Giitkkd  689 (696)
T KOG0475|consen  623 YFNDPSPSAVAGIPSRLDLKDILD---MTPFTVTDLTPMETVVDLFRKL-GLRQILV---------TKNGILLGIITKKD  689 (696)
T ss_pred             ccCCCCccccCCCCCCcCceeecc---CCcccccccCcHHHHHHHHHhh-CceEEEE---------ccCCeeEeeeehHH
Confidence               110        0122344443   4567899999999999999984 5555556         57899999999999


Q ss_pred             HHHHH
Q psy4847         172 VIEEL  176 (396)
Q Consensus       172 IiEel  176 (396)
                      ++...
T Consensus       690 ~l~~~  694 (696)
T KOG0475|consen  690 CLRHT  694 (696)
T ss_pred             HHHhh
Confidence            98653

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.89  E-value=0.0021  Score=53.10  Aligned_cols=57  Identities=25%  Similarity=0.370  Sum_probs=49.4

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ...++.++|..  ++.+++.++++. ++++.+.+.+...+||++++ ++++|+++.+||+.
T Consensus        65 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~  121 (122)
T cd04803          65 RDVPVAEVMKT--DVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR  121 (122)
T ss_pred             cCcCHHHhhCC--CCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence            46678999964  478899999999 99999999999999999765 68999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=96.88  E-value=0.0015  Score=69.25  Aligned_cols=73  Identities=18%  Similarity=0.268  Sum_probs=59.6

Q ss_pred             CCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          24 NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        24 ~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      |.++..+...+.    -.+.+|.++|++...+.++++++++. ++++.|.+++..++||++++ ++++|+|+.+||+..
T Consensus       148 GIVT~~DL~~v~----~~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~  220 (505)
T PLN02274        148 GYVTKRDWDFVN----DRETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRV  220 (505)
T ss_pred             EEEEHHHHhhcc----ccCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHH
Confidence            345555554332    34678999999876688999999999 99999999999999999765 789999999999753

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=96.88  E-value=0.0023  Score=52.08  Aligned_cols=56  Identities=20%  Similarity=0.223  Sum_probs=48.9

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .+.+++++|.+  ++..++.++++. ++++.|.+++..++||+++  ++++|+|+.+|++.
T Consensus        55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~  110 (111)
T cd04589          55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS  110 (111)
T ss_pred             CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence            35679999975  478899999998 9999999999999999975  78999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.86  E-value=0.0017  Score=53.62  Aligned_cols=57  Identities=23%  Similarity=0.395  Sum_probs=49.7

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      +...++.++|.+  +..+++.++++. +++..+.+.+.+.+||+++  ++++|+|+.+|++.
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~  120 (121)
T cd04633          64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR  120 (121)
T ss_pred             hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence            346689999975  378899999999 9999999999999999976  78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.85  E-value=0.0021  Score=53.19  Aligned_cols=57  Identities=19%  Similarity=0.367  Sum_probs=49.4

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ...++.++|.+  ++.+++.++++. +++..|.+++.+++||++++ ++++|+++..|++.
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~  121 (122)
T cd04635          65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK  121 (122)
T ss_pred             ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence            45678899964  378899999998 99999999999999999765 78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=96.84  E-value=0.0047  Score=50.44  Aligned_cols=54  Identities=28%  Similarity=0.439  Sum_probs=47.1

Q ss_pred             ccccccccCCCEEEEeCCCChhHHHHHHHHH-cCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847          44 IVGDVMTKLEDVYMLSYDAILDFETVSEIMK-SGYSRIPVYEDRRTNIVTMFYIKDLA  100 (396)
Q Consensus        44 tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~-~g~sriPV~~~~~~~IVGiL~vkDLl  100 (396)
                      ++.++|++  .++++..+.++. ++++.|.+ .++.++||++++.++++|+++.+|++
T Consensus        63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            59999996  378999999999 99999999 79999999987522899999999974

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=96.83  E-value=0.0025  Score=51.38  Aligned_cols=56  Identities=23%  Similarity=0.367  Sum_probs=48.6

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ...+.++|.+.  +.+++.++++. +++..+.+.+..++||++++ ++++|+++.+|++.
T Consensus        53 ~~~v~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~  108 (109)
T cd04583          53 AKSLEDIMLED--VFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD  108 (109)
T ss_pred             CCcHhHhhcCC--ceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence            35689999754  78899999999 99999999999999999765 78999999999863

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=96.83  E-value=0.0031  Score=51.03  Aligned_cols=54  Identities=15%  Similarity=0.158  Sum_probs=47.3

Q ss_pred             cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .++.++|.+.  ..+++.+.++. +++..|.+++..++||+++  ++++|+++..|++.
T Consensus        50 ~~~~~~~~~~--~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~iGvit~~dl~~  103 (104)
T cd04594          50 GDVVDYIVRG--IPYVRLTSTAE-EAWEVMMKNKTRWCPVVDD--GKFKGIVTLDSILD  103 (104)
T ss_pred             cchhhhhhcC--CcEEcCCCCHH-HHHHHHHHcCcceEEEEEC--CEEEEEEEHHHhhc
Confidence            4588899765  67899999999 9999999999999999973  79999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=96.83  E-value=0.003  Score=51.31  Aligned_cols=73  Identities=22%  Similarity=0.231  Sum_probs=56.1

Q ss_pred             cCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        23 ~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .|-+...+...... -.+.+.++.++|.+.  +.+++.++++. ++++.|.+.+...+||.+ + ++++|+|+.+|++.
T Consensus        37 ~G~v~~~dl~~~~~-~~~~~~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~  109 (110)
T cd04595          37 VGIISRRDVEKALR-HGLGHAPVKDYMSTD--VVTVPPDTPLS-EVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR  109 (110)
T ss_pred             EEEEEHHHHHHHHh-cccccCcHHHHhcCC--CEEECCCCcHH-HHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence            44466655432211 123567899999764  78899999999 999999999999999998 3 79999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=96.82  E-value=0.0028  Score=51.31  Aligned_cols=57  Identities=19%  Similarity=0.293  Sum_probs=49.5

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .+.++.++|.+.  +..++.++++. ++++.+.+.+...+||++++ ++++|+|+.+|++.
T Consensus        54 ~~~~v~~~~~~~--~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~  110 (111)
T cd04611          54 LQTPVGEVMSSP--LLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ  110 (111)
T ss_pred             CCcCHHHhcCCC--ceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence            467799999753  78899999999 99999999999999999765 78999999999864

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=96.82  E-value=0.0018  Score=55.05  Aligned_cols=56  Identities=27%  Similarity=0.315  Sum_probs=49.5

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ...++.++|.+.  +.+++.++++. +++..|.+.+..++||++ + |+++|+|+.+|++.
T Consensus        79 ~~~~v~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~  134 (135)
T cd04586          79 HGRKVADVMTRP--VVTVGEDTPLA-EVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLR  134 (135)
T ss_pred             cCCCHHHHhCCC--ceEeCCCCcHH-HHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhc
Confidence            457899999753  78999999999 999999999999999998 4 89999999999864

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.81  E-value=0.0035  Score=50.54  Aligned_cols=49  Identities=24%  Similarity=0.218  Sum_probs=41.7

Q ss_pred             CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHH
Q psy4847         119 NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL  176 (396)
Q Consensus       119 ~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEel  176 (396)
                      ++++.|.+++++.++++.|.+. +...++|+        |+.|+++|+||..|+....
T Consensus         1 ~~~~~v~~~~~i~~a~~~~~~~-~~~~~~V~--------d~~~~~~Giv~~~dl~~~~   49 (96)
T cd04614           1 RNVPTVWEETPLPVAVRIMELA-NVKALPVL--------DDDGKLSGIITERDLIAKS   49 (96)
T ss_pred             CCccEeCCCCcHHHHHHHHHHc-CCCeEEEE--------CCCCCEEEEEEHHHHhcCC
Confidence            3577899999999999999874 66677777        8889999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=96.80  E-value=0.0026  Score=62.93  Aligned_cols=75  Identities=12%  Similarity=0.069  Sum_probs=57.1

Q ss_pred             cCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        23 ~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .|.++..+..-....-...+.+|+++|++.  +.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus       243 iG~vt~~dl~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~  317 (321)
T PRK11543        243 QGVFTDGDLRRWLVGGGALTTPVNEAMTRG--GTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQ  317 (321)
T ss_pred             EEEecHHHHHHHHhCCCCcCCcHHHhcCCC--CEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHh
Confidence            345666664321111012356699999864  77899999999 99999999999999999865 68999999999975

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.77  E-value=0.0023  Score=52.17  Aligned_cols=56  Identities=25%  Similarity=0.290  Sum_probs=49.3

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .+.++.++|.+.  +.+++.++++. ++++.|.+.+...+||+++  +.++|+|+.+||+.
T Consensus        58 ~~~~v~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  113 (114)
T cd04629          58 GVATVRDIMTTE--VLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR  113 (114)
T ss_pred             CCccHHHHhccC--ceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence            356799999754  77899999999 9999999999999999986  78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.76  E-value=0.0031  Score=51.26  Aligned_cols=56  Identities=29%  Similarity=0.501  Sum_probs=48.8

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .+.++.++|.+.  +.+++.++++. ++++.+.+++...+||+++  ++++|+|+.+|++.
T Consensus        56 ~~~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~  111 (112)
T cd04802          56 REVPVGEVMSTP--LITIDPNASLN-EAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM  111 (112)
T ss_pred             ccCCHHHhcCCC--cEEECCCCCHH-HHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence            456899999754  78899999999 9999999999999999976  38999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=96.76  E-value=0.0037  Score=50.56  Aligned_cols=54  Identities=30%  Similarity=0.429  Sum_probs=47.5

Q ss_pred             ccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          44 IVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        44 tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ++.++|++.  +.+++.++++. ++++.+.+.+...+||++++ ++++|+|+..|++.
T Consensus        57 ~~~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~  110 (111)
T cd04612          57 LVGDVMTRD--PVTASPDETLR-DALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR  110 (111)
T ss_pred             CHHHhccCC--CeEECCCCCHH-HHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence            678899754  78899999999 99999999999999999764 78999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=96.75  E-value=0.0029  Score=51.51  Aligned_cols=56  Identities=21%  Similarity=0.252  Sum_probs=49.1

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      +.+++++|.+.  +..++.++++. ++++.+.+.+...+||++++ ++++|+|+..||+.
T Consensus        52 ~~~v~~~~~~~--~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~  107 (109)
T cd04606          52 DTPVSDIMDTD--VISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVID  107 (109)
T ss_pred             cchHHHHhCCC--CeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhh
Confidence            56799999764  78899999999 99999999999999999765 78999999999974

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=96.73  E-value=0.003  Score=51.27  Aligned_cols=55  Identities=25%  Similarity=0.347  Sum_probs=48.7

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      +.++.++|..  .+.+++.++++. ++++.|.+++.+++||+++  ++++|+++.+|++.
T Consensus        56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~  110 (111)
T cd04800          56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR  110 (111)
T ss_pred             cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence            4679999965  478999999999 9999999999999999976  78999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.73  E-value=0.0028  Score=51.46  Aligned_cols=75  Identities=19%  Similarity=0.229  Sum_probs=55.7

Q ss_pred             ccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          22 EFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        22 e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ..|.++..+....... ...+..+.++|..  ++..++.+.++. ++++.|.+++..++||++++ ++++|+++.+||..
T Consensus        36 ~~G~v~~~~l~~~~~~-~~~~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~  110 (111)
T cd04639          36 LVGLLTRDDLIRALAE-GGPDAPVRGVMRR--DFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE  110 (111)
T ss_pred             EEEEeeHHHHHHHHHh-cCCCCcHHHHhcC--CCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence            3445555554321111 1234579999974  478899999999 99999999999999999765 78999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=96.73  E-value=0.0026  Score=52.31  Aligned_cols=58  Identities=21%  Similarity=0.283  Sum_probs=46.5

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ...++++|.+....+..+.++++. ++++.|.+++...+||++++ ++++|+|+.+|++.
T Consensus        56 ~~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~  113 (114)
T cd04602          56 ETPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSDLKK  113 (114)
T ss_pred             CCCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence            345899998663333334489998 99999999999999999765 78999999999863

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.70  E-value=0.0054  Score=50.85  Aligned_cols=49  Identities=20%  Similarity=0.032  Sum_probs=42.2

Q ss_pred             CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      ++.++++++++.++++.|.+. +.+.++|+        |+.|+++|+||..|++..+.
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~-~~~~~pVv--------~~~~~~~Giv~~~dl~~~~~   50 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVER-RVSALPIV--------DENGKVVDVYSRFDVINLAK   50 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHc-CCCeeeEE--------CCCCeEEEEEeHHHHHHHHh
Confidence            567899999999999999885 66777777        77789999999999997654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=96.69  E-value=0.004  Score=51.07  Aligned_cols=57  Identities=16%  Similarity=0.308  Sum_probs=48.6

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC-CCcEEEEEEhhhhcc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR-RTNIVTMFYIKDLAL  101 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~-~~~IVGiL~vkDLl~  101 (396)
                      ..++.++|.+  ++.+++.++++. ++++.|.+++..++||++++ .++++|+|+..|++.
T Consensus        57 ~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          57 PSAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             cccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            3458899975  478899999999 99999999999999999764 268999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>KOG1764|consensus

Probab=96.69  E-value=0.011  Score=60.62  Aligned_cols=146  Identities=19%  Similarity=0.129  Sum_probs=101.8

Q ss_pred             CCHHHHHHHHHHhcccccccccc--cccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC
Q psy4847          26 LEKDEVNIISGALELRRKIVGDV--MTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD  103 (396)
Q Consensus        26 l~~~E~~~i~~alel~~~tV~dI--Mtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~  103 (396)
                      +..+....+....-...+.+..+  ++.....+.+.+...+- ++...+.++++.|+||.+...++++.+++.+-++..-
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l  211 (381)
T KOG1764|consen  133 SSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFL  211 (381)
T ss_pred             CcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHH
Confidence            45555555555555555555333  44544446777777666 7888899999999999985567999999999986421


Q ss_pred             -------Ccc---ccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHH
Q psy4847         104 -------PDD---NTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVI  173 (396)
Q Consensus       104 -------~~~---~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIi  173 (396)
                             +..   ..++.++.--....+..+..++++.++++.|... +..-++|+        |.+|+.+|+++.-|++
T Consensus       212 ~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~-~is~lpvV--------~~~g~~v~~~s~~Dv~  282 (381)
T KOG1764|consen  212 WLNGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSER-RISALPVV--------DENGKKVGNYSRFDVI  282 (381)
T ss_pred             HHhhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhc-CcCcceEE--------cCCCceecceehhhhh
Confidence                   100   0122222111123588999999999999999985 56666666        8889999999999999


Q ss_pred             HHHHhccc
Q psy4847         174 EELIQAEI  181 (396)
Q Consensus       174 Eeli~~eI  181 (396)
                      -.+..+.+
T Consensus       283 ~l~~~~~~  290 (381)
T KOG1764|consen  283 HLAREGTY  290 (381)
T ss_pred             hhhhcCcc
Confidence            98875443

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=96.64  E-value=0.0029  Score=66.93  Aligned_cols=60  Identities=22%  Similarity=0.283  Sum_probs=53.9

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      .+.+|+++|++..++++++.+.++. ++++.|.+++...+||++++ ++++|+|+.+||+..
T Consensus       157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~  216 (495)
T PTZ00314        157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKN  216 (495)
T ss_pred             CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhc
Confidence            3567999999866789999999999 99999999999999999865 789999999999854

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=96.63  E-value=0.0063  Score=52.63  Aligned_cols=49  Identities=27%  Similarity=0.188  Sum_probs=42.5

Q ss_pred             CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      .+..+.+++++.++++.|.+. ..+.++|+        |+.|+++|+||..|++..+.
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~-~~~~~~Vv--------D~~g~l~Givt~~Dl~~~~~   50 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDE-KQSCVLVV--------DSDDFLEGILTLGDIQRFLF   50 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHc-CCCEEEEE--------CCCCeEEEEEEHHHHHHHHh
Confidence            467899999999999999874 55667777        88899999999999999886

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.57  E-value=0.0073  Score=49.07  Aligned_cols=74  Identities=15%  Similarity=0.218  Sum_probs=55.0

Q ss_pred             cCCCCHHHH-HHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          23 FNDLEKDEV-NIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        23 ~~~l~~~E~-~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      -|.+...+. ..+..-. ..+..+.++|.+.  +.+++.++++. ++++.+.+++...+||++++ +.++|+|+.+|++.
T Consensus        37 ~G~v~~~~l~~~~~~~~-~~~~~v~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~  111 (112)
T cd04624          37 IGIVTERDIVRAVAAGI-DLDTPVSEIMTRD--LVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR  111 (112)
T ss_pred             EEEeeHHHHHHHHhccC-CCccCHHHhccCC--CEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence            344666664 2222211 2245788999753  78899999998 99999999999999999765 78999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=96.55  E-value=0.0044  Score=60.70  Aligned_cols=62  Identities=24%  Similarity=0.261  Sum_probs=55.1

Q ss_pred             HHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          36 GALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        36 ~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      +.-.+..-+|+.|||+.  +.++.++++.. +++-.+.+.|...+||+|+. |+++|||+-.|++.
T Consensus       308 rlr~~~~~~vk~imt~~--v~tv~pdtpa~-~lvp~lad~g~H~lpvld~~-g~lvGIvsQtDlia  369 (382)
T COG3448         308 RLRFLRPPTVKGIMTTP--VVTVRPDTPAV-ELVPRLADEGLHALPVLDAA-GKLVGIVSQTDLIA  369 (382)
T ss_pred             HhhccCCCcccccccCc--ceeecCCCcHH-HHHHHhhcCCcceeeEEcCC-CcEEEEeeHHHHHH
Confidence            34456889999999976  89999999999 99999999999999999876 89999999999974

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.50  E-value=0.0046  Score=51.18  Aligned_cols=56  Identities=23%  Similarity=0.380  Sum_probs=48.4

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ...+.++|.+  ++.+++.++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus        66 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~  121 (122)
T cd04637          66 NRRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK  121 (122)
T ss_pred             HhHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence            3468899974  478999999999 99999999999999999765 78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=96.50  E-value=0.0089  Score=48.37  Aligned_cols=54  Identities=22%  Similarity=0.386  Sum_probs=47.1

Q ss_pred             cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847          43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA  100 (396)
Q Consensus        43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl  100 (396)
                      ..+.++|.+.  +..++.++++. ++++.|.+++...+||++++ ++++|+|+.+|++
T Consensus        55 ~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~  108 (110)
T cd04605          55 KSVEDIMTRN--VITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIITSEDIS  108 (110)
T ss_pred             cCHHHhcCCC--CeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhh
Confidence            4588999653  77899999999 99999999999999999765 7899999999985

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.49  E-value=0.0095  Score=48.60  Aligned_cols=49  Identities=24%  Similarity=0.181  Sum_probs=42.5

Q ss_pred             CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      .+.+++.++++.++++.|.+. +.+.++|+        |+.|+++|+|+..|++..+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~--------d~~~~~~Giv~~~dl~~~~~   50 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKH-GYSAIPVL--------DKEGKYVGTISLTDILWKLK   50 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHC-CCceeeeE--------CCCCcEEEEEeHHHHHHHhh
Confidence            467899999999999999884 66777787        77899999999999998775

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=96.44  E-value=0.014  Score=49.35  Aligned_cols=50  Identities=20%  Similarity=0.167  Sum_probs=42.7

Q ss_pred             CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         119 NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       119 ~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      +++.++++++++.++++.|++. +...++|+        |+.|+++|+||..|++..+.
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~-~~~~~~Vv--------d~~~~~~Gii~~~dl~~~~~   51 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEK-GFDQLPVV--------DESGKILGMVTLGNLLSSLS   51 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHc-CCCEEEEE--------cCCCCEEEEEEHHHHHHHHH
Confidence            4678999999999999999984 55566666        77789999999999998876

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.41  E-value=0.0074  Score=50.58  Aligned_cols=51  Identities=12%  Similarity=0.254  Sum_probs=43.9

Q ss_pred             cccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          47 DVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        47 dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ++|.+  ++.+++.++++. ++++.|.+++..++||++++ ++++|+|+..||+.
T Consensus        75 ~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~  125 (126)
T cd04642          75 GVKSR--PLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS  125 (126)
T ss_pred             ccccC--CCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence            45543  478899999999 99999999999999999765 78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=96.38  E-value=0.0097  Score=60.94  Aligned_cols=109  Identities=16%  Similarity=0.143  Sum_probs=73.7

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC-ccccchhhhhhhhc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP-DDNTPLKTLCQFYQ  118 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~-~~~~~l~~v~~~~~  118 (396)
                      .+=.++++||.|...+  ...+.+ .  ++   .+++.+.+.|++.      |+++..+...+.. .....+.++    .
T Consensus       271 ~~~l~a~~~m~~~~~~--~~~~~~-~--~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~----~  332 (382)
T TIGR03415       271 LNVLTARSLMRPLTDL--EHVDGG-W--CV---SDRRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEVESL----E  332 (382)
T ss_pred             ccceeHHHHhcccccc--cccCcc-h--hh---hhcccceeEeecc------ceecccchHhHhhcccccchhhh----c
Confidence            4556889999765332  222222 1  22   2377888888754      7777777643211 111234442    3


Q ss_pred             CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         119 NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       119 ~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      +..+.|+++++|.+++..+... ..++++|         |+ |+++|+|+..+|+.+|.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~---------~~-~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       333 AAPTVINPDTLMRDVLAARHRT-GGAILLV---------EN-GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             ccCcccCCCCcHHHHHHHHhcC-CCCeEEe---------eC-CeEEEEEeHHHHHHHHh
Confidence            6788999999999999999884 5666655         65 99999999999999986

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=96.38  E-value=0.0074  Score=48.84  Aligned_cols=55  Identities=29%  Similarity=0.318  Sum_probs=47.6

Q ss_pred             cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .++.++|.+  .+..++.+.++. ++++.+.+.+...+||++++ ++++|+|+.+|++.
T Consensus        55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~  109 (110)
T cd04588          55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR  109 (110)
T ss_pred             cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence            568889864  478899999999 99999999999999999765 78999999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=96.38  E-value=0.0078  Score=40.37  Aligned_cols=45  Identities=24%  Similarity=0.433  Sum_probs=38.7

Q ss_pred             EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      +..++.++++. +++..+.+.++..+||++++ ++++|+++.+++..
T Consensus         2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~   46 (49)
T smart00116        2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIK   46 (49)
T ss_pred             ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHH
Confidence            35678888898 99999999999999999765 78999999999863

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.32  E-value=0.013  Score=48.95  Aligned_cols=49  Identities=18%  Similarity=0.200  Sum_probs=41.7

Q ss_pred             CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      ++..+.+++++.++++.|.+. +.+.++|+        |+.|+++|+||..|+++.+.
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~-~~~~~~Vv--------~~~~~~~G~it~~dl~~~~~   50 (128)
T cd04632           2 DVITVREDDSVGKAINVLREH-GISRLPVV--------DDNGKLTGIVTRHDIVDFVV   50 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHc-CCCEEEEE--------CCCCcEEEEEEHHHHHHHHh
Confidence            456899999999999999985 66677777        77799999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.27  E-value=0.0079  Score=51.97  Aligned_cols=56  Identities=29%  Similarity=0.405  Sum_probs=48.8

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ...++.++|.+.  +.+++.++++. +++..+.+.++.++||++.  ++++|+++.+|++.
T Consensus        87 ~~~~v~~~~~~~--~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~  142 (143)
T cd04634          87 GKMKVRDIMTKK--VITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE  142 (143)
T ss_pred             hcCCHHHHcCCC--CeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            456788999754  78999999999 9999999999999999976  78999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=96.26  E-value=0.01  Score=48.57  Aligned_cols=49  Identities=18%  Similarity=0.218  Sum_probs=43.0

Q ss_pred             ccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          48 VMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        48 IMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      +|++.  +.+++.++++. ++++.|.+++...+||+++  ++++|+|+.+||+.
T Consensus        56 ~m~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 YIDPS--PFTVSPRTSLE-KVHQLFRKLGLRHLLVVDE--GRLVGIITRKDLLK  104 (105)
T ss_pred             hccCC--CceECCCCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhhhc
Confidence            78753  77899999999 9999999999999999953  78999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=96.24  E-value=0.0065  Score=63.89  Aligned_cols=57  Identities=9%  Similarity=0.050  Sum_probs=50.9

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      ..+|+++|++.  +++++.++++. ++++.|.+++...+||++++ ++++|+|+.+||+..
T Consensus       145 ~~~V~dIMt~~--litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~  201 (475)
T TIGR01303       145 FTQVRDIMSTD--LVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRA  201 (475)
T ss_pred             CCCHHHHccCC--ceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHH
Confidence            35799999964  88999999999 99999999999999999765 789999999999853

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=96.24  E-value=0.0067  Score=63.87  Aligned_cols=57  Identities=18%  Similarity=0.134  Sum_probs=51.0

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      ...|.++|++  ++.+++.++++. +++..|.+++...+||++++ ++++|+|+.+||+..
T Consensus       147 ~~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~  203 (479)
T PRK07807        147 FTQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRA  203 (479)
T ss_pred             CCCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHH
Confidence            3569999996  488999999999 99999999999999999765 799999999999864

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=96.12  E-value=0.0068  Score=63.90  Aligned_cols=75  Identities=17%  Similarity=0.271  Sum_probs=58.6

Q ss_pred             cccCCCCHHHHHHHHHHhc---ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhh
Q psy4847          21 TEFNDLEKDEVNIISGALE---LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIK   97 (396)
Q Consensus        21 ~e~~~l~~~E~~~i~~ale---l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vk   97 (396)
                      .+.|.+++  .++...++.   -.+.+|++|||..  +++++..+.+= ++|-.|.+.+..++||.++  |+++|+|+..
T Consensus       191 ~~~GIvT~--~dl~~~v~~~g~~~~~~V~evmT~p--~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~  263 (610)
T COG2905         191 PLLGIVTR--KDLRSRVIADGRSKTQKVSEVMTSP--VISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLT  263 (610)
T ss_pred             Cccceeeh--HHHHHHHHhcCCCcccchhhhhccC--ceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHH
Confidence            34444443  344455543   3467899999955  89999987775 9999999999999999976  7999999999


Q ss_pred             hhccc
Q psy4847          98 DLALV  102 (396)
Q Consensus        98 DLl~~  102 (396)
                      |++..
T Consensus       264 dIl~l  268 (610)
T COG2905         264 DILRL  268 (610)
T ss_pred             HHHHh
Confidence            99743

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.99  E-value=0.028  Score=44.49  Aligned_cols=49  Identities=24%  Similarity=0.140  Sum_probs=41.7

Q ss_pred             CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      ++.+++.++++.++++.|.+. +.+.++|+        |+.++++|+|+..|++..+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~--------~~~~~~~G~v~~~~l~~~~~   50 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEH-GISGLPVV--------DDDGRLVGIVTERDLLRALA   50 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhc-CCceEEEE--------CCCCCEEEEEeHHHHHHHHH
Confidence            467899999999999999985 55666676        77789999999999998876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=95.99  E-value=0.01  Score=56.92  Aligned_cols=51  Identities=20%  Similarity=0.236  Sum_probs=44.8

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEE
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFY   95 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~   95 (396)
                      .+.+|+++|.+.  +.+++.++++. ++++.|.+++..++||++++ ++++|+|+
T Consensus       218 ~~~~v~~im~~~--~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~GvI~  268 (268)
T TIGR00393       218 LKSEVRDFMTLG--PKTFKLDALLL-EALEFLERRKITSLVVVDDH-NKVLGVLH  268 (268)
T ss_pred             ccCcHHHhCCCC--CeEECCCCcHH-HHHHHHHHcCCcEEEEECCC-CeEEEEEC
Confidence            356799999865  77899999999 99999999999999999765 68999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>KOG0498|consensus

Probab=95.96  E-value=0.012  Score=64.53  Aligned_cols=86  Identities=19%  Similarity=0.176  Sum_probs=67.9

Q ss_pred             CccccccccCcccceEEEEEeeEEEEEEcC---CcceeecCCccchhhhhcccccccCCCCCCCCCcccccCCCcccccc
Q psy4847         257 PTFKSLKKRNKPVDYFVLILEGRAEVVVGK---ENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVNL  333 (396)
Q Consensus       257 ~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~---e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  333 (396)
                      ++...|-++|.|.+.++.|..|++++....   +.....+||.++||++.++-....         |             
T Consensus       448 ~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~~---------p-------------  505 (727)
T KOG0498|consen  448 TPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWCLDL---------P-------------  505 (727)
T ss_pred             CCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHHhcC---------C-------------
Confidence            344569999999999999999999998844   467889999999998888752100         0             


Q ss_pred             cccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHhhhh
Q psy4847         334 DSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLME  373 (396)
Q Consensus       334 ~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as~~~  373 (396)
                               +-+||||++.|+..++.+..+.+.+..=+..
T Consensus       506 ---------~t~TVralt~~el~~L~~~dL~~V~~~f~~~  536 (727)
T KOG0498|consen  506 ---------QTRTVRALTYCELFRLSADDLKEVLQQFRRL  536 (727)
T ss_pred             ---------CCceeehhhhhhHHhccHHHHHHHHHHhHHH
Confidence                     1249999999999999999888776654433

>KOG0614|consensus

Probab=95.92  E-value=0.0087  Score=62.68  Aligned_cols=90  Identities=22%  Similarity=0.225  Sum_probs=75.5

Q ss_pred             CCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCCcccccCCCccccccc
Q psy4847         255 QKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVNLD  334 (396)
Q Consensus       255 ~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  334 (396)
                      ...+..++.+.|+|.+..+.+-+|+++|.-| +.+.--.|||+.||+-|..-+.  .+.+                    
T Consensus       181 ~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~-g~ll~~m~~gtvFGELAILync--tRtA--------------------  237 (732)
T KOG0614|consen  181 EYRAGSWIIREGEPGSHLYVSAEGELQVSRE-GKLLGKMGAGTVFGELAILYNC--TRTA--------------------  237 (732)
T ss_pred             cccCCcEEEecCCCCceEEEeecceEEEeeC-CeeeeccCCchhhhHHHHHhCC--cchh--------------------
Confidence            3456678999999999999999999999875 4567889999999999988632  1111                    


Q ss_pred             ccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHhhhhhccCC
Q psy4847         335 SILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLMEKSKKS  378 (396)
Q Consensus       335 ~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as~~~~~~~~  378 (396)
                                 ||+|+++|+.-.|-|+-|++..|-|-+++..+.
T Consensus       238 -----------sV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~  270 (732)
T KOG0614|consen  238 -----------SVRALTDVRLWAIDREVFQAIMMRTGLERHEQY  270 (732)
T ss_pred             -----------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       899999999999999999999999988876554

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.89  E-value=0.018  Score=57.35  Aligned_cols=121  Identities=17%  Similarity=0.166  Sum_probs=83.7

Q ss_pred             HHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchh
Q psy4847          32 NIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLK  111 (396)
Q Consensus        32 ~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~  111 (396)
                      ..+.++=..+=.++.+||.+ .+.-....+......+...+...+.+.+-+++. .++.+|++...++...         
T Consensus       263 ~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~-~~~~~g~v~~~~~~~~---------  331 (386)
T COG4175         263 DFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVDR-GNKFVGVVSIDSLVKA---------  331 (386)
T ss_pred             HHHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHhc-cCceeeEEeccchhcc---------
Confidence            44444444555689999985 222222222222114566666666555556653 3569999987666432         


Q ss_pred             hhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         112 TLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       112 ~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                       .+   ..++..|..++++.+++....+. ..++++|         |+.|+++|+|+...++++|.
T Consensus       332 -~~---~~~~~~v~~d~~~~~~~~~~~~~-~~p~aVv---------de~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         332 -AL---IDDVLTVDADTPLSEILARIRQA-PCPVAVV---------DEDGRYVGIISRGELLEALA  383 (386)
T ss_pred             -cc---cccccccCccchHHHHHHHHhcC-CCceeEE---------cCCCcEEEEecHHHHHHHHh
Confidence             11   35678899999999999999985 7888887         88999999999999999986

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.88  E-value=0.018  Score=46.39  Aligned_cols=55  Identities=20%  Similarity=0.302  Sum_probs=46.8

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      +..+.++|.+.  +.+++.+.++. +++..+.+++...+||+++  ++++|+|+.+|++.
T Consensus        51 ~~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~  105 (106)
T cd04638          51 EEQLALLMTRD--PPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR  105 (106)
T ss_pred             cchHHHHhcCC--CceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            34678888754  67889999998 9999999999999999974  68999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=95.86  E-value=0.033  Score=45.06  Aligned_cols=49  Identities=20%  Similarity=0.228  Sum_probs=40.3

Q ss_pred             CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCC-CceeeeecHHHHHHHHH
Q psy4847         120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF-YETVGLITLEDVIEELI  177 (396)
Q Consensus       120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~-g~~vGIVTleDIiEeli  177 (396)
                      .+.++++++++.++++.|.+. +...++|+        |+. |+++|++|..|++..+.
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~-~~~~~~v~--------~~~~~~~~G~v~~~~l~~~~~   51 (111)
T cd04590           2 DIVALDADDTLEEILELIAES-GHSRFPVY--------DGDLDNIIGVVHVKDLLRALA   51 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhC-CCceEEEE--------CCCCceEEEEEEHHHHHHHHH
Confidence            467899999999999999874 44455555        666 89999999999999875

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=95.74  E-value=0.029  Score=45.01  Aligned_cols=48  Identities=25%  Similarity=0.237  Sum_probs=41.1

Q ss_pred             CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      ++.++.+++++.+++..|.+. ..+.++|+        |+ |+++|+||..|+...+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~--------~~-~~~~G~v~~~dl~~~~~   49 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREY-GVSQLPVV--------DD-GRVVGSIDESDLLDALI   49 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHc-CCceeeEe--------eC-CeeEEEEeHHHHHHHHh
Confidence            467899999999999999985 56667777        66 89999999999998775

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=95.72  E-value=0.016  Score=60.55  Aligned_cols=59  Identities=24%  Similarity=0.407  Sum_probs=52.0

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      .+.+++++|++ .++.+++.+.++. ++++.|.+++...+||++++ ++++|+|+.+||+..
T Consensus       141 ~~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~  199 (450)
T TIGR01302       141 KGKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKR  199 (450)
T ss_pred             CCCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhc
Confidence            35689999984 2478999999999 99999999999999999875 899999999999854

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=95.71  E-value=0.015  Score=62.54  Aligned_cols=57  Identities=21%  Similarity=0.262  Sum_probs=50.1

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCC-CcEEEEEEhhhhcc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRR-TNIVTMFYIKDLAL  101 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~-~~IVGiL~vkDLl~  101 (396)
                      +.++.|+|++.  +.++++++++. ++++.|.+++..++||++++. ++++|+|+.+|++.
T Consensus       511 ~~~v~dim~~~--~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~  568 (574)
T PRK01862        511 DKTAADYAHTP--FPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLD  568 (574)
T ss_pred             cchHHHhccCC--CeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHH
Confidence            46799999864  77899999999 999999999999999998653 47999999999975

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=95.65  E-value=0.027  Score=46.17  Aligned_cols=48  Identities=31%  Similarity=0.293  Sum_probs=39.7

Q ss_pred             CceEEcCCCCHHHHHHHHHhcCC-ceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         120 SCYFVFEDTTLDVLLKQFKEGIK-GHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       120 ~v~~V~~dt~L~~~L~~f~~~~~-~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      +++++++++++.++++.|+.. . .+.++|+        |+ |+++|+|+..|++..+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Vv--------d~-~~~~G~v~~~~l~~~~~   50 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERD-PDLSALAVV--------DD-GRPVGLIMREALMELLS   50 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhC-CCccEEEEE--------EC-CeeEEEEEHHHHHHHHh
Confidence            567889999999999999874 4 4566666        77 99999999999987654

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=95.59  E-value=0.036  Score=54.72  Aligned_cols=91  Identities=13%  Similarity=0.155  Sum_probs=66.2

Q ss_pred             cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc------CCccccchhhhhhh
Q psy4847          43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV------DPDDNTPLKTLCQF  116 (396)
Q Consensus        43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~------~~~~~~~l~~v~~~  116 (396)
                      .++.++|.|.   +.++++.++. ++++.|.+.+...+||+++. |.++|+|+..||+..      +..+...-..+.+ 
T Consensus       133 ~~l~~l~r~~---~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe~-G~viGiVTleDIle~ivGei~de~d~~~~~~i~~-  206 (292)
T PRK15094        133 FSMDKVLRQA---VVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQ-  206 (292)
T ss_pred             CCHHHHcCCC---cCcCCCCcHH-HHHHHHHhcCCEEEEEEeCC-CCEEEEeEHHHHHHHHhCCCccccccccccccEE-
Confidence            4588999764   5799999999 99999999999999999865 789999999999742      1111111011211 


Q ss_pred             hcCCceEEcCCCCHHHHHHHHHh
Q psy4847         117 YQNSCYFVFEDTTLDVLLKQFKE  139 (396)
Q Consensus       117 ~~~~v~~V~~dt~L~~~L~~f~~  139 (396)
                      .......|+..++|.++.+.|.-
T Consensus       207 ~~~~~~~v~G~~~l~dl~~~l~~  229 (292)
T PRK15094        207 LSRHTWTVRALASIEDFNEAFGT  229 (292)
T ss_pred             eCCCeEEEEeccCHHHHHHHhCC
Confidence            12335678999999998888743

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=95.45  E-value=0.039  Score=57.33  Aligned_cols=55  Identities=15%  Similarity=0.076  Sum_probs=45.7

Q ss_pred             hhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         114 CQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       114 ~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      .++|.+++..+.+++++.++++.|.+. +...++|+        |+.++++|+||..|++..+.
T Consensus       338 ~~im~~~~~~v~~~~tl~ea~~~m~~~-~~~~~~Vv--------d~~~~~~Givt~~dl~~~~~  392 (454)
T TIGR01137       338 KDLHLPAPVTVHPTETVGDAIEILREY-GFDQLPVV--------TEAGKVLGSVTLRELLSALF  392 (454)
T ss_pred             HHhCcCCCeEECCCCcHHHHHHHHHHc-CCCEEEEE--------cCCCeEEEEEEHHHHHHHHh
Confidence            334457889999999999999999874 55666777        77789999999999999776

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>KOG1113|consensus

Probab=95.23  E-value=0.046  Score=54.77  Aligned_cols=65  Identities=23%  Similarity=0.227  Sum_probs=54.4

Q ss_pred             HHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccc
Q psy4847         242 SLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQN  307 (396)
Q Consensus       242 ~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~  307 (396)
                      .-+.+++.....+....+..+-..|..+|+|+.|=+|.++|.++ .+...+.+|..+||+-||.-+
T Consensus       136 eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~-~~~v~~~~~g~sFGElALmyn  200 (368)
T KOG1113|consen  136 EQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN-GTYVTTYSPGGSFGELALMYN  200 (368)
T ss_pred             HHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC-CeEEeeeCCCCchhhhHhhhC
Confidence            33666776655555566778999999999999999999999999 556889999999999999974

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=94.84  E-value=0.05  Score=48.97  Aligned_cols=57  Identities=18%  Similarity=0.321  Sum_probs=46.6

Q ss_pred             chhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847         109 PLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ  178 (396)
Q Consensus       109 ~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~  178 (396)
                      ..+++|   .+|+.+|.++.++.++++.|+..+.++++++         ++ +.++|-||-.||...+..
T Consensus        66 ta~~iM---~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi---------~~-~k~VGsItE~~iv~~~le  122 (187)
T COG3620          66 TAKTIM---HSPVVSVSPDDSISDVVNLMRDKGISQLPVI---------EE-DKVVGSITENDIVRALLE  122 (187)
T ss_pred             eHhhhc---cCCeeEECchhhHHHHHHHHHHcCCccCcee---------eC-CeeeeeecHHHHHHHHhc
Confidence            344454   5899999999999999999998655555555         44 899999999999999984

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=94.75  E-value=0.053  Score=56.02  Aligned_cols=93  Identities=12%  Similarity=0.111  Sum_probs=66.1

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC--C-cccc-chhhhhhhh
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD--P-DDNT-PLKTLCQFY  117 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~--~-~~~~-~l~~v~~~~  117 (396)
                      ..+++++|+|   +..++++.++. ++++.|.+++....+|+|+. |.++|+|+..|++..-  . .+.. +-...+.-.
T Consensus       254 ~~~l~~~~~~---~~~Vpe~~~l~-~ll~~m~~~~~~~aiVvDE~-G~~~GiVT~eDileeivgei~de~d~~~~~i~~~  328 (408)
T TIGR03520       254 NFDWQSLLRE---PYFVPENKKLD-DLLRDFQEKKNHLAIVVDEY-GGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKI  328 (408)
T ss_pred             CCCHHHHcCC---CeEeCCCCcHH-HHHHHHHhcCceEEEEEcCC-CCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEe
Confidence            3457889975   57899999999 99999999999999999764 7899999999997421  0 1110 111111101


Q ss_pred             cCCceEEcCCCCHHHHHHHHHh
Q psy4847         118 QNSCYFVFEDTTLDVLLKQFKE  139 (396)
Q Consensus       118 ~~~v~~V~~dt~L~~~L~~f~~  139 (396)
                      ......|+..+++.++.+.|.-
T Consensus       329 ~~~~~~v~G~~~l~~l~~~l~~  350 (408)
T TIGR03520       329 DDNNYVFEGKTSLKDFYKILKL  350 (408)
T ss_pred             CCCeEEEEeccCHHHHHHHhCC
Confidence            2334667779999999998854

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK11832 putative DNA-binding transcriptional regulator; Provisional

Probab=92.94  E-value=0.8  Score=43.09  Aligned_cols=94  Identities=12%  Similarity=-0.012  Sum_probs=63.2

Q ss_pred             HHHHHHHhcCCCCCCCccccc-cccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCCc
Q psy4847         242 SLLDRITQKGTSQQKPTFKSL-KKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSA  320 (396)
Q Consensus       242 ~vL~~Ll~~~~v~~~~~~~~L-Y~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~  320 (396)
                      .++..|..++.....++.+.+ |....--+.+++|++|.|.+..+..-+...+.+-..||......              
T Consensus        13 ~L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~d~ll~~t~~aP~IlGl~~~~~--------------   78 (207)
T PRK11832         13 KLDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREENVLIGITQAPYIMGLADGLM--------------   78 (207)
T ss_pred             HHHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEecCCeEEEeccCCeEeecccccC--------------
Confidence            566777777776666666654 65555557899999999999876544443333333344322111              


Q ss_pred             ccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         321 AQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       321 ~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                                         .--+.|..+|.++|....|+++.+.+.+.
T Consensus        79 -------------------~~~~~~~l~ae~~c~~~~i~~~~~~~iie  107 (207)
T PRK11832         79 -------------------KNDIPYKLISEGNCTGYHLPAKQTITLIE  107 (207)
T ss_pred             -------------------CCCceEEEEEcCccEEEEeeHHHHHHHHH
Confidence                               01126899999999999999999888764

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=92.84  E-value=0.1  Score=54.52  Aligned_cols=59  Identities=19%  Similarity=0.241  Sum_probs=52.7

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      -.+..++++|.+.  ++.+..++... ++...+.+++....||++++ ++++|+++..|++.+
T Consensus       193 ~~~~~i~~im~~~--~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidv  251 (451)
T COG2239         193 EPDELLKDLMEDD--VVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDV  251 (451)
T ss_pred             CcHhHHHHHhccc--ceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHH
Confidence            4678899999876  88999999999 99999999999999999876 799999999999753

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=91.02  E-value=0.49  Score=48.18  Aligned_cols=54  Identities=24%  Similarity=0.434  Sum_probs=46.7

Q ss_pred             cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ..+.++|.+.  +.+++.++++. +++..+.++++. +||++++ ++++|+|+..+++.
T Consensus       302 ~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~  355 (363)
T TIGR01186       302 QGLQDVLIDD--IYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVD  355 (363)
T ss_pred             CchhhhhccC--CceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHH
Confidence            4577888644  67899999999 999999999999 9999766 89999999998864

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG1113|consensus

Probab=90.41  E-value=0.44  Score=47.94  Aligned_cols=76  Identities=18%  Similarity=0.252  Sum_probs=60.7

Q ss_pred             cccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCCcccccCCCcccccccccCC
Q psy4847         259 FKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSILR  338 (396)
Q Consensus       259 ~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  338 (396)
                      +..+-..|.+++.|.+|.+|-|.|.--.+|.+--.++..|||+.||..+  .++.+                        
T Consensus       271 G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~v~vkl~~~dyfge~al~~~--~pr~A------------------------  324 (368)
T KOG1113|consen  271 GERVIVQGDQGEHFYIIEEGEVDVLKKRDGVEVKLKKGDYFGELALLKN--LPRAA------------------------  324 (368)
T ss_pred             CceEEeccCCcceEEEecccccchhhccCCeEEEechhhhcchHHHHhh--chhhc------------------------
Confidence            3457888899999999999999998866778889999999999999872  22211                        


Q ss_pred             cccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847         339 YTFVPDYSVRATTEMFYVKIRRSFYLAAK  367 (396)
Q Consensus       339 ~~~~PD~sv~~~~d~~~~~Itr~~Y~~al  367 (396)
                             +|.|.+++..++..|..|+.-|
T Consensus       325 -------tv~a~~~~kc~~~dk~~ferll  346 (368)
T KOG1113|consen  325 -------TVVAKGRLKCAKLDKPRFERLL  346 (368)
T ss_pred             -------eeeccCCceeeeeChHHHHHHh
Confidence                   7888888888888888776544

>KOG2550|consensus

Probab=90.07  E-value=0.31  Score=49.97  Aligned_cols=70  Identities=24%  Similarity=0.308  Sum_probs=57.3

Q ss_pred             CCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          24 NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        24 ~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      |.++..+.+.+    +=+.+-+.+|||++.  ++.+.+.++. ++-+.+.++.-.++||++++ |++|.+|...||..
T Consensus       156 G~vtsrdi~f~----~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k  225 (503)
T KOG2550|consen  156 GIITSRDIQFL----EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMK  225 (503)
T ss_pred             EEEehhhhhhh----hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-Cceeeeeehhhhhh
Confidence            44566666666    446788999999985  7888888898 88888888888899999876 99999999999953

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=88.64  E-value=0.66  Score=46.84  Aligned_cols=58  Identities=14%  Similarity=0.208  Sum_probs=50.2

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .++.++..+||+.  .+++.+.+++. .....|.-.|+.-+||++++ .+++|+++..|++.
T Consensus       246 ~~~t~ieKVMtkn--p~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk  303 (432)
T COG4109         246 KPSTTIEKVMTKN--PITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLK  303 (432)
T ss_pred             CCCccHHHHhccC--CeeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHH
Confidence            3567889999965  68899999998 78888888899999999876 79999999999975

>KOG0614|consensus

Probab=87.64  E-value=1.1  Score=47.50  Aligned_cols=67  Identities=21%  Similarity=0.213  Sum_probs=50.9

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCC-----cceeecCCccchhhhhccc
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKE-----NLVYEAGPFSYFGCQALTQ  306 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e-----~~~~E~gpfs~~G~~aL~~  306 (396)
                      +|.+|.++..-....-.+...-|.+.|+..|+|.+|-.|.|.|+---|     -..--.+-..|||+.||..
T Consensus       284 ~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~FGE~al~~  355 (732)
T KOG0614|consen  284 PEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYFGERALLG  355 (732)
T ss_pred             CHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchhhHHHhhc
Confidence            667777776554444455666799999999999999999999987333     3444456778999999986

>PRK11573 hypothetical protein; Provisional

Probab=85.17  E-value=2.5  Score=43.84  Aligned_cols=62  Identities=8%  Similarity=0.216  Sum_probs=47.7

Q ss_pred             ccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         107 NTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       107 ~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      +.+++++|.+ ...+..++.++++.++++.+.+.+.+.+++..        +.-..++|+|...|++..+.
T Consensus       186 ~~~v~eiMtP-r~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~--------~~~D~IiGiv~~kDll~~~~  247 (413)
T PRK11573        186 KVTVDDIMVP-RNEIVGIDINDDWKSILRQLTHSPHGRIVLYR--------DSLDDAISMLRVREAYRLMT  247 (413)
T ss_pred             CCChhhcCCc-cceEEEEECCCCHHHHHHHHHhCCCceEEEEc--------CCCCceEEEEEHHHHHHHhh
Confidence            3467888865 35689999999999999999986455555443        44568999999999997653

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=85.15  E-value=1.9  Score=44.54  Aligned_cols=56  Identities=13%  Similarity=0.163  Sum_probs=46.2

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      ..++.++|.+.  +.+++.++++. +++..+.++.+. +||++++ ++++|+|+..+++..
T Consensus       336 ~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~  391 (400)
T PRK10070        336 QQGLDAALIDA--PLAVDAQTPLS-ELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRA  391 (400)
T ss_pred             CCchhhhhccC--CceeCCCCCHH-HHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHH
Confidence            34677777643  67899999999 999999988776 9999765 899999999998753

>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle

Probab=84.93  E-value=4.1  Score=36.50  Aligned_cols=100  Identities=14%  Similarity=0.138  Sum_probs=57.0

Q ss_pred             cHHHHHHHHhcCCCCCC-Ccccc-ccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQK-PTFKS-LKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNN  317 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~-~~~~~-LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~  317 (396)
                      +...+++|...+..... .+... --..-.|.|..-|+|+||+.|.....-+ -=.+|+.++      ++++.....   
T Consensus        16 s~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~fL-H~I~p~qFl------DSPEW~s~~---   85 (153)
T PF04831_consen   16 SRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGRFL-HYIYPYQFL------DSPEWESLR---   85 (153)
T ss_pred             CHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECCEee-Eeecccccc------cChhhhccc---
Confidence            45667777766433222 22211 2345568899999999999999854332 222444443      322221111   


Q ss_pred             CCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         318 SSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       318 ~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                        |   +.+..-++              |..|.++|+|+.=+|......+.
T Consensus        86 --~---s~~~~FQV--------------TitA~~~Cryl~W~R~kL~~~l~  117 (153)
T PF04831_consen   86 --P---SEDDKFQV--------------TITAEEDCRYLCWPREKLYLLLA  117 (153)
T ss_pred             --c---CCCCeEEE--------------EEEEcCCcEEEEEEHHHHHHHHh
Confidence              0   11111111              88899999999999986555443

It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=80.91  E-value=3.9  Score=42.50  Aligned_cols=65  Identities=9%  Similarity=0.246  Sum_probs=49.8

Q ss_pred             ccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhcc
Q psy4847         107 NTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAE  180 (396)
Q Consensus       107 ~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~e  180 (396)
                      ..+++++|.+ ...+.+++.+.++.++.+.+++..++.+++.-        +.-..++|+|...|++..+..++
T Consensus       205 ~~~v~eiMtP-R~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~--------~~~D~iiGiv~~Kdll~~~~~~~  269 (429)
T COG1253         205 DRTVREIMTP-RTDIVALDLTDTVEELIELILESGHSRIPVYD--------GDLDNIIGIVHVKDLLRALLDGQ  269 (429)
T ss_pred             CcEeeeEeee-cccEEEEcCCCCHHHHHHHHHhCCCCeeeEEc--------CCCCcEEEEEEHHHHHHHHhcCc
Confidence            4577888865 35688999999999999999775445555442        34568999999999999988543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	396
3jtf_A	129	The Cbs Domain Pair Structure Of A Magnesium And Co		1e-06
3lfr_A	136	The Crystal Structure Of A Cbs Domain From A Putati		7e-04

>pdb|3JTF|A Chain A, The Cbs Domain Pair Structure Of A Magnesium And Cobalt Efflux Protein From Bordetella Parapertussis In Complex With Amp Length = 129

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 13/111 (11%)
Query: 67  ETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFE 126
           + ++ I+++ +SR PVYED R NI+ +   KDL     +    +++L +       F+ E
Sbjct: 28  QLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYXLEPALDIRSLVR----PAVFIPE 83
Query: 127 DTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177
              L+VLL++F+   + H+A V  ++  G         GL+T EDV+E+++
Sbjct: 84  VKRLNVLLREFRAS-RNHLAIV--IDEHG------GISGLVTXEDVLEQIV 125

>pdb|3LFR|A Chain A, The Crystal Structure Of A Cbs Domain From A Putative Metal Ion Transporter Bound To Amp From Pseudomonas Syringae To 1.55a Length = 136

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 17/124 (13%)
Query: 67  ETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL---ALVDPDDNTPLKTLCQFYQNSCYF 123
           E +  ++ + +SR PV  +   +++ +   KDL    L    D+  +K L +       F
Sbjct: 26  EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLLR----PATF 81
Query: 124 VFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMD 183
           V E   L+VLL++F+     H A V         D +    GL+T+EDV+E+++  +I D
Sbjct: 82  VPESKRLNVLLREFRAN-HNHXAIVI--------DEYGGVAGLVTIEDVLEQIV-GDIED 131
Query: 184 ETDV 187
           E DV
Sbjct: 132 EHDV 135

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	396
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	1e-31
3ocm_A	173	Putative membrane protein; structural genomics, PS	6e-31
3oco_A	153	Hemolysin-like protein containing CBS domains; str	2e-29
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	2e-27
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	3e-27
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	1e-26
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	6e-25
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	2e-24
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	5e-24
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	1e-23
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} Length = 172

 Score =  117 bits (295), Expect = 1e-31
 Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 16/162 (9%)

Query: 26  LEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYED 85
           +E +E  ++     L  + +  +M    D+  L  +  LD   +  +M+S +SR PV  +
Sbjct: 25  IEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD-ANLRTVMQSPHSRFPVCRN 83

Query: 86  RRTNIVTMFYIKDL-ALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGH 144
              ++V +   K L +     +   L  L +    +C FV    +   LL+ F+      
Sbjct: 84  NVDDMVGIISAKQLLSESIAGERLELVDLVK----NCNFVPNSLSGMELLEHFRTT-GSQ 138

Query: 145 MAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETD 186
           M FV         D + +  GL+TL+D+++ L   E   E  
Sbjct: 139 MVFVV--------DEYGDLKGLVTLQDMMDALT-GEFFQEDG 171

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} Length = 173

 Score =  115 bits (290), Expect = 6e-31
 Identities = 36/170 (21%), Positives = 59/170 (34%), Gaps = 15/170 (8%)

Query: 17  HDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSG 76
                       +E N++SG L L  + +  +MT   DV  ++ D         ++  + 
Sbjct: 10  PSAMPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAP 68

Query: 77  YSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQ 136
           +S  PV       +V +   KDL      +    +   +        V E   +  L+  
Sbjct: 69  HSFFPVCRGSLDEVVGIGRAKDLVADLITEGRVRRNRLR----DPIIVHESIGILRLMDT 124

Query: 137 FKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETD 186
            K   +G +  V         D F    GL+T  DV E  I  E  DE +
Sbjct: 125 LKRS-RGQLVLVA--------DEFGAIEGLVTPIDVFEA-IAGEFPDEDE 164

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} Length = 153

 Score =  110 bits (279), Expect = 2e-29
 Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 17/165 (10%)

Query: 24  NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVY 83
           ++ ++++ N +  A E+  K+  DVM     + ++  D  +  + +   ++  YSR PV 
Sbjct: 1   SNADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVT 59

Query: 84  EDRRT-NIVTMFYIKDL-ALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGI 141
            D     I+   Y  D+      DD   + T+ +        V E+  +  ++++     
Sbjct: 60  ADNDKDKIIGYAYNYDIVRQARIDDKAKISTIMR----DIVSVPENMKVPDVMEEMSAH- 114

Query: 142 KGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETD 186
           +  MA V  +      D +  T G+IT +DV EE +   + DE D
Sbjct: 115 RVPMAIV--I------DEYGGTSGIITDKDVYEE-LFGNLRDEQD 150

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} Length = 148

 Score =  104 bits (263), Expect = 2e-27
 Identities = 30/153 (19%), Positives = 74/153 (48%), Gaps = 15/153 (9%)

Query: 26  LEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYED 85
           +++ E  ++    E   K + ++M    D+  +      + + ++ + + G +R PV   
Sbjct: 6   IDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYPVCRK 64

Query: 86  RRTNIVTMFYIKDL-ALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGH 144
            + +I+   +I+DL      ++   L+ + +       ++ E+ T+D  L++ ++  K  
Sbjct: 65  NKDDILGFVHIRDLYNQKINENKIELEEILR----DIIYISENLTIDKALERIRKE-KLQ 119

Query: 145 MAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177
           +A V  V      D +  T G++T+ED++EE++
Sbjct: 120 LAIV--V------DEYGGTSGVVTIEDILEEIV 144

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} Length = 156

 Score =  104 bits (263), Expect = 3e-27
 Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 15/158 (9%)

Query: 18  DVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGY 77
               E    + D +  +   L+     V D M     + +L  +  ++    + ++ + +
Sbjct: 13  RQAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE-RITAYVIDTAH 71

Query: 78  SRIPVYEDRRTNIVTMFYIKDL-ALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQ 136
           SR PV  + +  ++ + + KDL   +   +   LK++ +       FV E  +L  LLK+
Sbjct: 72  SRFPVIGEDKDEVLGILHAKDLLKYMFNPEQFHLKSILR----PAVFVPEGKSLTALLKE 127

Query: 137 FKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174
           F+E  + HMA V  +      D +  T GL+T ED+IE
Sbjct: 128 FREQ-RNHMAIV--I------DEYGGTSGLVTFEDIIE 156

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} Length = 136

 Score =  102 bits (257), Expect = 1e-26
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 18/148 (12%)

Query: 43  KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL--- 99
             V D+M     +  +        E +  ++ + +SR PV  +   +++ +   KDL   
Sbjct: 3   LQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPL 61

Query: 100 ALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDP 159
            L    D+  +K L +       FV E   L+VLL++F+     HMA V  +      D 
Sbjct: 62  ILKADGDSDDVKKLLR----PATFVPESKRLNVLLREFRAN-HNHMAIV--I------DE 108

Query: 160 FYETVGLITLEDVIEELIQAEIMDETDV 187
           +    GL+T+EDV+E+ I  +I DE DV
Sbjct: 109 YGGVAGLVTIEDVLEQ-IVGDIEDEHDV 135

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} Length = 129

 Score = 97.9 bits (245), Expect = 6e-25
 Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 14/135 (10%)

Query: 43  KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102
           + V D+M     + +L     L  + ++ I+++ +SR PVYED R NI+ +   KDL   
Sbjct: 5   RTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRY 63

Query: 103 DPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYE 162
             +    +++L +       F+ E   L+VLL++F+   + H+A V  +      D    
Sbjct: 64  MLEPALDIRSLVR----PAVFIPEVKRLNVLLREFRAS-RNHLAIV--I------DEHGG 110

Query: 163 TVGLITLEDVIEELI 177
             GL+T+EDV+E+++
Sbjct: 111 ISGLVTMEDVLEQIV 125

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} Length = 130

 Score = 96.3 bits (241), Expect = 2e-24
 Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 16/137 (11%)

Query: 43  KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL--A 100
             V  VMT    V+ +     ++ E + +   + +SR  VY +++ NI+   +  +L   
Sbjct: 6   VPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKM 64

Query: 101 LVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF 160
                    L  + +        V  +T L  +  Q     +  +A V  V      D +
Sbjct: 65  QQSGSGQKQLGAVMR----PIQVVLNNTALPKVFDQMMTH-RLQLALV--V------DEY 111

Query: 161 YETVGLITLEDVIEELI 177
              +GL+TLED+ E L+
Sbjct: 112 GTVLGLVTLEDIFEHLV 128

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} Length = 127

 Score = 95.2 bits (238), Expect = 5e-24
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 16/137 (11%)

Query: 43  KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL--A 100
           + V D+M     +  L  +  LD E +  I++S +SR PV  + + +I  +   KDL   
Sbjct: 3   QRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPF 61

Query: 101 LVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF 160
           +    +   +  + +    +   V E   +D +LK+F+   + HMA V  +      D F
Sbjct: 62  MRSDAEAFSMDKVLR----TAVVVPESKRVDRMLKEFRSQ-RYHMAIV--I------DEF 108

Query: 161 YETVGLITLEDVIEELI 177
               GL+T+ED++E ++
Sbjct: 109 GGVSGLVTIEDILELIV 125

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} Length = 130

 Score = 94.4 bits (236), Expect = 1e-23
 Identities = 30/137 (21%), Positives = 60/137 (43%), Gaps = 18/137 (13%)

Query: 45  VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL--ALV 102
           V D+M    ++  +  +       V ++  S + RI +Y D   + ++M  +++    + 
Sbjct: 4   VNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT 62

Query: 103 DPDDNTP--LKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF 160
           +  + T   +           YFV E T L   L +F+   K  +  V  V      D +
Sbjct: 63  EKKEFTKEIMLRAAD----EIYFVPEGTPLSTQLVKFQRN-KKKVGLV--V------DEY 109

Query: 161 YETVGLITLEDVIEELI 177
            +  GL+T+ED++EE++
Sbjct: 110 GDIQGLVTVEDILEEIV 126

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 6e-08
 Identities = 36/343 (10%), Positives = 89/343 (25%), Gaps = 104/343 (30%)

Query: 4   HPQGLRSF-------IRVRDHDVTTEFNDLEKDEVNIISG--------ALELRRKIVGDV 48
           + +   +F       +  R   VT   +      +++              L  K +   
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 49  MTKL--------------------EDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRT 88
              L                    + +        ++ + ++ I++S  + +   E R+ 
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK- 373

Query: 89  NIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTT-----LDVLLKQFKEG--- 140
                     L++  P  + P   L   + +                 ++ KQ KE    
Sbjct: 374 ------MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 141 -------IKGH---MAFVHR-----------VNNEGEGDP-----FYETVG--LITLE-- 170
                  +K        +HR            +++    P     FY  +G  L  +E  
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 171 ---DVIEEL------IQAEIMDETDVWTDN--------------QHKTKRHKQSSHRGQD 207
               +   +      ++ +I  ++  W  +               +      +       
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547

Query: 208 FTLFAEKSEAQRIHISPQLNLATFQFLSSNFYVGSLLDRITQK 250
              F  K E   +  S   +L     ++ +  +     +  Q+
Sbjct: 548 ILDFLPKIEEN-LICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 46/308 (14%), Positives = 90/308 (29%), Gaps = 78/308 (25%)

Query: 14  VRDHDVTTEFNDLEKDEVNI--IS-GALELRRKIVGDVMTKLEDVYMLSYDAILDFETVS 70
              + V  + +        I  ++             V+  L+    L Y    ++ + S
Sbjct: 171 CLSYKVQCKMDF------KIFWLNLK----NCNSPETVLEMLQK---LLYQIDPNWTSRS 217

Query: 71  EIMKSGYSRIPVYEDRRTNIVTMFYIKDL--ALVDPDDNTPLKTLCQFYQNSCYFVFEDT 128
           +   +   RI      +  +  +   K     L+   +    K    F   SC  +   T
Sbjct: 218 DHSSNIKLRI---HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILL--T 271

Query: 129 TLDVLLKQF-KEGIKGHMAFVHRVNNEGEGDPFYETVGL------ITLEDVIEE------ 175
           T    +  F       H++  H            E   L         +D+  E      
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPD----EVKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 176 ----LIQAEIMDETDVWTDN-QH----KTKRHKQSS--------HRG--QDFTLFAEKSE 216
               +I   I D    W DN +H    K     +SS        +R      ++F     
Sbjct: 328 RRLSIIAESIRDGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-- 384

Query: 217 AQRIHISPQLNLATFQFLSSNFYVGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFV--L 274
               HI   L L+   F      V  +++++ +            ++K+ K     +  +
Sbjct: 385 ---AHIPTIL-LSLIWFDVIKSDVMVVVNKLHKYS---------LVEKQPKESTISIPSI 431

Query: 275 ILEGRAEV 282
            LE + ++
Sbjct: 432 YLELKVKL 439

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	396
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.93
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.93
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.91
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.89
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.88
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.86
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.85
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.84
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.84
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.82
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.81
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.81
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.77
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.74
4esy_A	170	CBS domain containing membrane protein; structural	99.73
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.72
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.68
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.68
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.67
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.67
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.66
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.66
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.66
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.65
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.65
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.65
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.64
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.63
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.63
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.63
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.63
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.63
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.61
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.61
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.59
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.59
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.59
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.59
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.58
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.58
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.58
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.58
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.57
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.56
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.52
3ddj_A	296	CBS domain-containing protein; structural genomics	99.51
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.48
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.48
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.47
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.47
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.46
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.45
3ddj_A	296	CBS domain-containing protein; structural genomics	99.45
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.44
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.43
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.43
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.4
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.37
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.36
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.34
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.33
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.33
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.32
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.3
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.3
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.09
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.88
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.83
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	98.61
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	98.56
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	98.54
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	98.53
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	98.48
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	98.47
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	98.44
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	98.41
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	98.37
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	98.37
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	98.36
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	98.36
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	98.33
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	98.32
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	98.32
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	98.31
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	98.29
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	98.27
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	98.27
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	98.26
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	98.26
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	98.25
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	98.25
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	98.24
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	98.24
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	98.24
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	98.24
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	98.23
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	98.22
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	98.22
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	98.21
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	98.2
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	98.19
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	98.19
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	98.17
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	98.14
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.14
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	98.14
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	98.13
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.11
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	98.1
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.07
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	98.06
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	98.05
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.05
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	98.04
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	98.04
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	98.0
4esy_A	170	CBS domain containing membrane protein; structural	97.94
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	97.91
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	97.88
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	97.88
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	97.87
3b02_A	195	Transcriptional regulator, CRP family; structural	97.87
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	97.87
1pbj_A	125	Hypothetical protein; structural genomics, domain,	97.82
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	97.8
3fio_A	70	A cystathionine beta-synthase domain protein fused	97.79
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	97.79
1ft9_A	222	Carbon monoxide oxidation system transcription reg	97.76
4fry_A	157	Putative signal-transduction protein with CBS DOM;	97.75
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	97.75
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	97.74
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	97.72
1pvm_A	184	Conserved hypothetical protein TA0289; structural	97.72
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	97.71
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	97.71
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	97.7
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	97.69
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	97.67
3oco_A	153	Hemolysin-like protein containing CBS domains; str	97.67
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	97.66
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	97.66
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	97.65
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	97.63
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	97.63
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	97.62
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	97.62
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	97.57
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	97.56
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	97.56
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	97.53
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	97.53
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	97.52
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	97.52
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	97.52
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	97.49
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	97.46
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	97.45
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	97.41
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	97.41
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	97.39
2zcw_A	202	TTHA1359, transcriptional regulator, FNR/CRP famil	97.37
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	97.29
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	97.25
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	97.24
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	97.22
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	97.19
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	97.13
2oux_A	286	Magnesium transporter; 10001B, structural genomics	97.13
3ocm_A	173	Putative membrane protein; structural genomics, PS	96.94
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	96.89
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	96.78
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	96.76
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.55
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	96.37
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	96.33
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	96.19
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.02
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	95.95
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	95.67
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	95.67

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.93  E-value=2.7e-26  Score=204.78  Aligned_cols=165  Identities=23%  Similarity=0.408  Sum_probs=110.1

Q ss_pred             CCCHHHHHHHHHccccccccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEE
Q psy4847           2 CVHPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIP   81 (396)
Q Consensus         2 ~~~~~Elk~ll~~~~~~~~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriP   81 (396)
                      .+|++||+.+++.+     .+.|.|+++|++++.+++.|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++|
T Consensus         6 ~~t~~el~~l~~~~-----~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~p   79 (172)
T 3lhh_A            6 NVTQEDIQAMLQEG-----SSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD-ANLRTVMQSPHSRFP   79 (172)
T ss_dssp             ------------------------------------------CTTTTSEEGGGCCCEETTSCHH-HHHHHHHTCCCSEEE
T ss_pred             cCCHHHHHHHHHHH-----HHcCCCCHHHHHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHH-HHHHHHHhCCCCEEE
Confidence            36899999999986     678999999999999999999999999999988899999999999 999999999999999


Q ss_pred             EEeCCCCcEEEEEEhhhhcccCCc-cccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCC
Q psy4847          82 VYEDRRTNIVTMFYIKDLALVDPD-DNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF  160 (396)
Q Consensus        82 V~~~~~~~IVGiL~vkDLl~~~~~-~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~  160 (396)
                      |++++.++++|+|+.+||+..... ...++.++|    +++++|++++++.+++..|.+. +.+.++|+        |++
T Consensus        80 Vvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im----~~~~~v~~~~~l~~a~~~m~~~-~~~~~pVv--------d~~  146 (172)
T 3lhh_A           80 VCRNNVDDMVGIISAKQLLSESIAGERLELVDLV----KNCNFVPNSLSGMELLEHFRTT-GSQMVFVV--------DEY  146 (172)
T ss_dssp             EESSSTTSEEEEEEHHHHHHHHHTTCCCCGGGGC----BCCEEEETTCCHHHHHHHHHHH-TCSEEEEE--------CTT
T ss_pred             EEeCCCCeEEEEEEHHHHHHHHhhcCcccHHHHh----cCCeEeCCCCCHHHHHHHHHHc-CCeEEEEE--------eCC
Confidence            997654799999999999864321 234566654    6889999999999999999995 78999998        888


Q ss_pred             CceeeeecHHHHHHHHHhcccccccc
Q psy4847         161 YETVGLITLEDVIEELIQAEIMDETD  186 (396)
Q Consensus       161 g~~vGIVTleDIiEeli~~eI~DE~D  186 (396)
                      |+++||||++||+++++ ++|.||.|
T Consensus       147 g~lvGiit~~Dil~~l~-~~~~de~~  171 (172)
T 3lhh_A          147 GDLKGLVTLQDMMDALT-GEFFQEDG  171 (172)
T ss_dssp             SCEEEEEEHHHHHHHHH-TTCC----
T ss_pred             CCEEEEeeHHHHHHHHh-CCCccccC
Confidence            99999999999999999 79999976

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.93  E-value=4.8e-25  Score=193.42  Aligned_cols=155  Identities=25%  Similarity=0.392  Sum_probs=138.6

Q ss_pred             CCCCHHHHHHHHHccccccccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEE
Q psy4847           1 MCVHPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRI   80 (396)
Q Consensus         1 ~~~~~~Elk~ll~~~~~~~~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sri   80 (396)
                      +.+|++||+.+++.+     .+.|.|+++|++++.++++|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++
T Consensus         1 ~~~t~~el~~li~~~-----~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~-~a~~~m~~~~~~~~   74 (156)
T 3oi8_A            1 SNASAEDVLNLLRQA-----HEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE-RITAYVIDTAHSRF   74 (156)
T ss_dssp             CCCCHHHHHHHHHHH-----HHTTSSCHHHHHHHHHHHHHTTCBGGGTCEEGGGCCCEETTCCHH-HHHHHHHHHCCSEE
T ss_pred             CCCCHHHHHHHHHhH-----HhcCCcCHHHHHHHHHHhccCCCCHhheeeeHHHeEEECCCCCHH-HHHHHHHHCCCCEE
Confidence            468999999999996     678999999999999999999999999999987899999999999 99999999999999


Q ss_pred             EEEeCCCCcEEEEEEhhhhcccCCc-cccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCC
Q psy4847          81 PVYEDRRTNIVTMFYIKDLALVDPD-DNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDP  159 (396)
Q Consensus        81 PV~~~~~~~IVGiL~vkDLl~~~~~-~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De  159 (396)
                      ||++++.++++|+|+.+||+..... ...++.++|    +++++|++++++.+++..|.+. +.+.++|+        |+
T Consensus        75 pVvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im----~~~~~v~~~~~l~~a~~~m~~~-~~~~~~Vv--------d~  141 (156)
T 3oi8_A           75 PVIGEDKDEVLGILHAKDLLKYMFNPEQFHLKSIL----RPAVFVPEGKSLTALLKEFREQ-RNHMAIVI--------DE  141 (156)
T ss_dssp             EEESSSTTCEEEEEEGGGGGGGSSCGGGCCHHHHC----BCCCEEETTSBHHHHHHHHHHT-TCCEEEEE--------CT
T ss_pred             EEEcCCCCcEEEEEEHHHHHHHHHcCCcccHHHHc----CCCEEECCCCCHHHHHHHHHhc-CCeEEEEE--------CC
Confidence            9998764599999999999875433 345677775    3588999999999999999995 88999998        88


Q ss_pred             CCceeeeecHHHHHH
Q psy4847         160 FYETVGLITLEDVIE  174 (396)
Q Consensus       160 ~g~~vGIVTleDIiE  174 (396)
                      +|+++||||++||+|
T Consensus       142 ~g~~~Givt~~Dile  156 (156)
T 3oi8_A          142 YGGTSGLVTFEDIIE  156 (156)
T ss_dssp             TSSEEEEEEHHHHCC
T ss_pred             CCCEEEEEEHHHhcC
Confidence            999999999999974

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.91  E-value=1.1e-24  Score=195.53  Aligned_cols=152  Identities=23%  Similarity=0.285  Sum_probs=132.2

Q ss_pred             ccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhh
Q psy4847          20 TTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL   99 (396)
Q Consensus        20 ~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDL   99 (396)
                      +.+.|.|+++|++++.+++.|.+.+|++||+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||
T Consensus        13 ~~~~g~l~~~e~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl   91 (173)
T 3ocm_A           13 MPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDL   91 (173)
T ss_dssp             -----CCCHHHHHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHH-HHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHH
T ss_pred             HHhcCCcCHHHHHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHH-HHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHH
Confidence            3667999999999999999999999999999988899999999999 999999999999999997655799999999999


Q ss_pred             cccCC-ccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847         100 ALVDP-DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ  178 (396)
Q Consensus       100 l~~~~-~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~  178 (396)
                      +.... ....++. +    .+++++|++++++.+++..|.++ +.++++|+        |++|+++||||..||++++. 
T Consensus        92 ~~~~~~~~~~~v~-~----~~~~~~v~~~~~l~~al~~m~~~-~~~~~~Vv--------de~g~lvGiIT~~Dil~~l~-  156 (173)
T 3ocm_A           92 VADLITEGRVRRN-R----LRDPIIVHESIGILRLMDTLKRS-RGQLVLVA--------DEFGAIEGLVTPIDVFEAIA-  156 (173)
T ss_dssp             HHHHHHHSSCCGG-G----SBCCCEECGGGCHHHHHHHHHHS-TTCCEEEE--------CTTCCEEEEECHHHHHHHHH-
T ss_pred             HHHHhcCCcchhH-h----cCCCeEECCCCcHHHHHHHHHHc-CCeEEEEE--------eCCCCEEEEEeHHHHHHHHh-
Confidence            86421 1234555 3    36889999999999999999995 88999999        88999999999999999999 


Q ss_pred             ccccccccc
Q psy4847         179 AEIMDETDV  187 (396)
Q Consensus       179 ~eI~DE~D~  187 (396)
                      |+|.||+|.
T Consensus       157 ~~i~de~~~  165 (173)
T 3ocm_A          157 GEFPDEDEL  165 (173)
T ss_dssp             CCCCCTTSC
T ss_pred             CcCCCcccc
Confidence            899999885

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.89  E-value=2.5e-23  Score=179.96  Aligned_cols=145  Identities=21%  Similarity=0.405  Sum_probs=113.9

Q ss_pred             ccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          22 EFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        22 e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      +.|.|+++|+.++.+++.|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||+.
T Consensus         2 ~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~   80 (148)
T 3lv9_A            2 NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYN   80 (148)
T ss_dssp             ----------------CGGGTCBGGGTSEETTTCCCEETTCCHH-HHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHH
T ss_pred             CCCccCHHHHHHHHHHhccCCCCHHHccccHHHeEEECCCCCHH-HHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHH
Confidence            45889999999999999999999999999977899999999999 99999999999999999765479999999999986


Q ss_pred             cCCcc-ccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhcc
Q psy4847         102 VDPDD-NTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAE  180 (396)
Q Consensus       102 ~~~~~-~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~e  180 (396)
                      ..... ..++.++|    +++++|++++++.+++..|.+. +.+.++|+        |++|+++||||..||+++|+ |+
T Consensus        81 ~~~~~~~~~v~~~m----~~~~~v~~~~~l~~~~~~m~~~-~~~~l~Vv--------d~~g~~~Giit~~dil~~l~-~~  146 (148)
T 3lv9_A           81 QKINENKIELEEIL----RDIIYISENLTIDKALERIRKE-KLQLAIVV--------DEYGGTSGVVTIEDILEEIV-GE  146 (148)
T ss_dssp             HHHHHSCCCGGGTC----BCCEEEETTSBHHHHHHHHHHH-TCSEEEEE--------CTTSSEEEEEEHHHHHHHHH-HT
T ss_pred             HHhcCCCccHHHhc----CCCeEECCCCCHHHHHHHHHhc-CCeEEEEE--------eCCCCEEEEEEHHHHHHHHh-Cc
Confidence            42211 34566654    6889999999999999999995 78888888        88899999999999999999 67


Q ss_pred             c
Q psy4847         181 I  181 (396)
Q Consensus       181 I  181 (396)
                      |
T Consensus       147 i  147 (148)
T 3lv9_A          147 I  147 (148)
T ss_dssp             C
T ss_pred             C
Confidence            6

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.88  E-value=1.6e-23  Score=182.72  Aligned_cols=148  Identities=25%  Similarity=0.411  Sum_probs=118.3

Q ss_pred             CCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEE-eCCCCcEEEEEEhhhhcccC
Q psy4847          25 DLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVY-EDRRTNIVTMFYIKDLALVD  103 (396)
Q Consensus        25 ~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~-~~~~~~IVGiL~vkDLl~~~  103 (396)
                      .|+++|++++.+++.|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||+ +++.++++|+|+.+||+...
T Consensus         2 ~l~~~e~~~i~~~~~l~~~~v~~iM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~   80 (153)
T 3oco_A            2 NADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQA   80 (153)
T ss_dssp             ------CCHHHHHHHHHHCBHHHHSEEGGGCCCEETTSBHH-HHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHH
T ss_pred             CcCHHHHHHHHHhcccCCCEeeeEecchhheEEEcCCCCHH-HHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHH
Confidence            47888999999999999999999999977799999999999 99999999999999999 55447999999999998542


Q ss_pred             C-ccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhcccc
Q psy4847         104 P-DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIM  182 (396)
Q Consensus       104 ~-~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~  182 (396)
                      . ....++.++|    +++++|++++++.+++..|.+. +.+.++|+        |++|+++||||..||+++++ +++.
T Consensus        81 ~~~~~~~v~~~m----~~~~~v~~~~~l~~~~~~m~~~-~~~~lpVv--------d~~g~~vGivt~~dil~~l~-~~~~  146 (153)
T 3oco_A           81 RIDDKAKISTIM----RDIVSVPENMKVPDVMEEMSAH-RVPMAIVI--------DEYGGTSGIITDKDVYEELF-GNLR  146 (153)
T ss_dssp             HHHTTSBGGGTC----BCCEEEETTSBHHHHHHHHHHT-TCSCEEEE--------CTTSCEEEEECHHHHHHHHH-C---
T ss_pred             hcCCCCcHHHHh----CCCeEECCCCCHHHHHHHHHHc-CCcEEEEE--------eCCCCEEEEeeHHHHHHHHh-ccCC
Confidence            1 1134556554    6889999999999999999995 78888888        88899999999999999999 8999


Q ss_pred             ccccc
Q psy4847         183 DETDV  187 (396)
Q Consensus       183 DE~D~  187 (396)
                      ||+|.
T Consensus       147 de~~~  151 (153)
T 3oco_A          147 DEQDD  151 (153)
T ss_dssp             -----
T ss_pred             CcccC
Confidence            99874

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.86  E-value=5.4e-22  Score=169.84  Aligned_cols=131  Identities=30%  Similarity=0.481  Sum_probs=105.9

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC---Cccccchhhhhhhhc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD---PDDNTPLKTLCQFYQ  118 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~---~~~~~~l~~v~~~~~  118 (396)
                      +.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||+...   .....++.++|    
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m----   76 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLL----   76 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTC----
T ss_pred             CCChHhccccHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHc----
Confidence            678999999988899999999999 9999999999999999986547999999999998642   22334666665    


Q ss_pred             CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhccccccccc
Q psy4847         119 NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDV  187 (396)
Q Consensus       119 ~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~DE~D~  187 (396)
                      +++++|++++++.+++..|.++ +.+.++|+        |++|+++||||+.||+++|+ |++.||+|.
T Consensus        77 ~~~~~v~~~~~l~~~~~~m~~~-~~~~~~Vv--------d~~g~lvGiit~~Dil~~l~-~~~~de~~~  135 (136)
T 3lfr_A           77 RPATFVPESKRLNVLLREFRAN-HNHMAIVI--------DEYGGVAGLVTIEDVLEQIV-GDIEDEHDV  135 (136)
T ss_dssp             BCCCEEETTCBHHHHHHHHHHH-TCCEEEEE--------CTTSCEEEEEEHHHHHTTC-----------
T ss_pred             CCCeEECCCCcHHHHHHHHHhc-CCeEEEEE--------eCCCCEEEEEEHHHHHHHHh-CCCcCcccC
Confidence            3588999999999999999995 78899998        88999999999999999999 799999873

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.85  E-value=4.8e-21  Score=162.29  Aligned_cols=127  Identities=31%  Similarity=0.526  Sum_probs=110.1

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcC
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQN  119 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~  119 (396)
                      ..+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||+........++.++|    +
T Consensus         2 ~~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~v~~~m----~   76 (129)
T 3jtf_A            2 NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSLV----R   76 (129)
T ss_dssp             --CCBHHHHCEEGGGCCCEETTSCHH-HHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCTTSCGGGGC----B
T ss_pred             CCCCCHHHhCccHHHeEEECCCCCHH-HHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccCCcCHHHHh----C
Confidence            46789999999988899999999999 999999999999999998655799999999999865433445677775    4


Q ss_pred             CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhccc
Q psy4847         120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEI  181 (396)
Q Consensus       120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI  181 (396)
                      ++.+|++++++.+++..|.+. +.+.++|+        |++|+++||||++||+++|+ |||
T Consensus        77 ~~~~v~~~~~l~~~~~~m~~~-~~~~~pVv--------d~~g~~~Giit~~Dil~~l~-gei  128 (129)
T 3jtf_A           77 PAVFIPEVKRLNVLLREFRAS-RNHLAIVI--------DEHGGISGLVTMEDVLEQIV-GDI  128 (129)
T ss_dssp             CCCEEETTCBHHHHHHHHHTS-SCCEEEEE--------CC-CCEEEEEEHHHHHHHHH-HTC
T ss_pred             CCeEeCCCCcHHHHHHHHHhc-CCeEEEEE--------eCCCCEEEEEEHHHHHHHHh-CCC
Confidence            578999999999999999995 88999998        88899999999999999999 676

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.84  E-value=9.8e-21  Score=160.96  Aligned_cols=128  Identities=22%  Similarity=0.399  Sum_probs=106.6

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc-ccchhhhhhhhcCC
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD-NTPLKTLCQFYQNS  120 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~-~~~l~~v~~~~~~~  120 (396)
                      +.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||+...... ......+.++| ++
T Consensus         1 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~~~~~v~~~m-~~   78 (130)
T 3hf7_A            1 KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLRAA-DE   78 (130)
T ss_dssp             CCBHHHHSEEGGGCCEEETTSCHH-HHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCCCHHHHHHHS-BC
T ss_pred             CcCHHHhCccHHHEEEEcCCCCHH-HHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCccchhhHHHhc-cC
Confidence            358999999988899999999999 9999999999999999976558999999999997643221 11122333444 67


Q ss_pred             ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhccc
Q psy4847         121 CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEI  181 (396)
Q Consensus       121 v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI  181 (396)
                      +++|++++++.++++.|.++ +.+.++|+        |++|+++||||.+||+++|+ |+|
T Consensus        79 ~~~v~~~~~l~~~~~~m~~~-~~~~~~Vv--------d~~g~lvGiit~~Dil~~l~-g~i  129 (130)
T 3hf7_A           79 IYFVPEGTPLSTQLVKFQRN-KKKVGLVV--------DEYGDIQGLVTVEDILEEIV-GDF  129 (130)
T ss_dssp             CCEEETTCBHHHHHHHHHHH-CCCEEEEE--------CTTSCEEEEEEHHHHHHHHH-C--
T ss_pred             CeEeCCCCcHHHHHHHHHhc-CCeEEEEE--------cCCCCEEEEeeHHHHHHHHh-CCC
Confidence            88999999999999999995 78999998        88999999999999999999 776

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.84  E-value=4.4e-21  Score=169.28  Aligned_cols=130  Identities=17%  Similarity=0.213  Sum_probs=108.5

Q ss_pred             HHHHHHhc-ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC----c-
Q psy4847          32 NIISGALE-LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP----D-  105 (396)
Q Consensus        32 ~~i~~ale-l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~----~-  105 (396)
                      .||...|+ |-.++++++|||+.++.+++.++++. +++..|.++|++++||++++ ++++|+|+.+|++....    . 
T Consensus         3 ami~~~~e~~l~~~~~~iM~P~~~v~~v~~~~t~~-~a~~~m~~~~~s~~pVvd~~-~~lvGiit~~Di~~~~~~~~~~~   80 (156)
T 3k6e_A            3 AMIAKEFETFLLGQEETFLTPAKNLAVLIDTHNAD-HATLLLSQMTYTRVPVVTDE-KQFVGTIGLRDIMAYQMEHDLSQ   80 (156)
T ss_dssp             HHHHHHHHHHHHTTGGGGEEETTSSCCEETTSBHH-HHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCCH
T ss_pred             chHHHHHHHHhhccHHHhCcchhHeEEECCcCCHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEecchhhhhhhccccc
Confidence            35666664 66778999999999999999999999 99999999999999999765 89999999999964211    1 


Q ss_pred             ---cccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         106 ---DNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       106 ---~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                         ...++.++|   .+++++|++++++.++++.|.+.   ++++|+        |++|+++||||.+||++++.
T Consensus        81 ~~~~~~~v~~im---~~~~~~v~~~~~l~~~~~~m~~~---~~lpVV--------d~~g~l~GiiT~~Dil~~~~  141 (156)
T 3k6e_A           81 EIMADTDIVHMT---KTDVAVVSPDFTITEVLHKLVDE---SFLPVV--------DAEGIFQGIITRKSILKAVN  141 (156)
T ss_dssp             HHHTTSBGGGTC---BCSCCCBCTTCCHHHHHHHTTTS---SEEEEE--------CTTSBEEEEEEHHHHHHHHH
T ss_pred             ccccccCHHHhh---cCCceecccccHHHHHHHHHHHc---CCeEEE--------ecCCEEEEEEEHHHHHHHHH
Confidence               123555554   58899999999999999999873   346777        89999999999999999996

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.82  E-value=1.7e-19  Score=166.28  Aligned_cols=138  Identities=13%  Similarity=0.091  Sum_probs=122.7

Q ss_pred             CCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHc---CCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          26 LEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS---GYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        26 l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~---g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      ++++|+.++.+++.|.+.+|+++|++.  +++++.++++. ++++.|.+.   ++..+||++++ ++++|+|+.+||+..
T Consensus        37 l~~~e~~~i~~~l~~~~~~v~~iM~~~--~~~v~~~~tv~-eal~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~dll~~  112 (205)
T 3kxr_A           37 MGERQRQRFELYDQYSENEIGRYTDHQ--MLVLSDKATVA-QAQRFFRRIELDCNDNLFIVDEA-DKYLGTVRRYDIFKH  112 (205)
T ss_dssp             SCHHHHHHHHHHHHSCTTCGGGGCBCC--CCEEETTCBHH-HHHHHHHHCCCTTCCEEEEECTT-CBEEEEEEHHHHTTS
T ss_pred             CCHHHHHHHHHHhCCCcchHHhhccCc--eEEECCCCcHH-HHHHHHHhhCccCeeEEEEEcCC-CeEEEEEEHHHHHhC
Confidence            799999999999999999999999974  88999999999 999999987   78999999765 899999999999875


Q ss_pred             CCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhcccc
Q psy4847         103 DPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIM  182 (396)
Q Consensus       103 ~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~  182 (396)
                      .+  ..++.++|   .+++++|++++++.++++.|.+. +.+.++|+        |++|+++||||.+||++.+. .+..
T Consensus       113 ~~--~~~v~~im---~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVV--------D~~g~lvGiIT~~Dil~~i~-~e~~  177 (205)
T 3kxr_A          113 EP--HEPLISLL---SEDSRALTANTTLLDAAEAIEHS-REIELPVI--------DDAGELIGRVTLRAATALVR-EHYE  177 (205)
T ss_dssp             CT--TSBGGGGC---CSSCCCEETTSCHHHHHHHHHTS-SCSEEEEE--------CTTSBEEEEEEHHHHHHHHH-HHHC
T ss_pred             CC--cchHHHHh---cCCCeEECCCCCHHHHHHHHHhc-CCCEEEEE--------cCCCeEEEEEEHHHHHHHHH-HHHH
Confidence            44  34677776   47889999999999999999995 88999998        89999999999999999997 4443

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.81  E-value=9.3e-20  Score=153.69  Aligned_cols=122  Identities=29%  Similarity=0.444  Sum_probs=105.5

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC--CccccchhhhhhhhcC
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD--PDDNTPLKTLCQFYQN  119 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~--~~~~~~l~~v~~~~~~  119 (396)
                      +.+|+++|+|..+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||+...  .....++.++|    +
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~v~~~m----~   76 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL----R   76 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCCCCCHHHHC----B
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCCCCCHHHHc----C
Confidence            678999999987889999999999 9999999999999999976547999999999998642  22345677765    4


Q ss_pred             CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      ++.+|++++++.+++..|.+. +.+.++|+        |++|+++||||..||+++|+
T Consensus        77 ~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~g~~~Giit~~dll~~l~  125 (127)
T 3nqr_A           77 TAVVVPESKRVDRMLKEFRSQ-RYHMAIVI--------DEFGGVSGLVTIEDILELIV  125 (127)
T ss_dssp             CCCEEETTCBHHHHHHHHHHT-TCCEEEEE--------CTTSCEEEEEEHHHHHHHC-
T ss_pred             CCeEECCCCcHHHHHHHHHhc-CCeEEEEE--------eCCCCEEEEEEHHHHHHHHh
Confidence            577999999999999999995 78888888        88999999999999999987

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.81  E-value=4.2e-20  Score=156.47  Aligned_cols=125  Identities=23%  Similarity=0.350  Sum_probs=105.8

Q ss_pred             cccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC--Cccccchhhhhhh
Q psy4847          39 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD--PDDNTPLKTLCQF  116 (396)
Q Consensus        39 el~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~--~~~~~~l~~v~~~  116 (396)
                      +|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||+...  .....++.++|  
T Consensus         2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~~~v~~~m--   78 (130)
T 3i8n_A            2 NAQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSGQKQLGAVM--   78 (130)
T ss_dssp             -----CCTTTSCCBCCCCEEETTSBHH-HHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTTTSBHHHHS--
T ss_pred             CcCcCCHhhCCCcHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCCcCCHHHHh--
Confidence            478899999999988888999999999 9999999999999999986557999999999997542  22234666665  


Q ss_pred             hcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         117 YQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       117 ~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                        +++.+|++++++.++++.|.+. +.+.++|+        |++|+++||||.+||+++|+
T Consensus        79 --~~~~~v~~~~~l~~~~~~m~~~-~~~~~~Vv--------d~~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           79 --RPIQVVLNNTALPKVFDQMMTH-RLQLALVV--------DEYGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             --EECCEEETTSCHHHHHHHHHHH-TCCEEEEE--------CTTSCEEEEEEHHHHHHHHH
T ss_pred             --cCCcCcCCCCcHHHHHHHHHHc-CCeEEEEE--------cCCCCEEEEEEHHHHHHHHc
Confidence              4678999999999999999995 78889988        88999999999999999998

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.77  E-value=1.7e-18  Score=166.13  Aligned_cols=157  Identities=17%  Similarity=0.228  Sum_probs=131.0

Q ss_pred             CCHHHHHHHHHcccccccccc---------CCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHH
Q psy4847           3 VHPQGLRSFIRVRDHDVTTEF---------NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM   73 (396)
Q Consensus         3 ~~~~Elk~ll~~~~~~~~~e~---------~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~   73 (396)
                      |++++++.+++..     .+.         +.++..+...+.+++.+.+.+|+++|++  ++++++.++++. ++++.|.
T Consensus        91 l~~d~~~~ll~~l-----~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~  162 (278)
T 2yvy_A           91 LSLDDLADALQAV-----RKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLR  162 (278)
T ss_dssp             SCHHHHHHHHHHH-----HHHCHHHHHHHHHHSCHHHHHHHHHHHHSCTTBGGGTCBS--CCCEECTTSBHH-HHHHHHH
T ss_pred             CCHHHHHHHHHhC-----CCccHHHHHHHHHcCCHHHHHHHHHHHCCCcchHHhhcCC--CceEECCCCcHH-HHHHHHH
Confidence            5667777777764     233         5688999999999999999999999997  488999999999 9999999


Q ss_pred             Hc-----CCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEE
Q psy4847          74 KS-----GYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFV  148 (396)
Q Consensus        74 ~~-----g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV  148 (396)
                      ++     +++++||++++ ++++|+|+.+||+...+  ..++.++|   .+++++|++++++.++++.|++. +.+.++|
T Consensus       163 ~~~~~~~~~~~~~Vvd~~-~~lvGivt~~dll~~~~--~~~v~~im---~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpV  235 (278)
T 2yvy_A          163 RAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVADP--RTRVAEIM---NPKVVYVRTDTDQEEVARLMADY-DFTVLPV  235 (278)
T ss_dssp             HHTTTCSCSSEEEEECTT-CBEEEEEEHHHHHHSCT--TCBSTTTS---BSSCCCEETTSBHHHHHHHHHHH-TCSEEEE
T ss_pred             HccCCccceeEEEEECCC-CCEEEEEEHHHHhcCCC--CCcHHHHh---CCCCeEEeCCCCHHHHHHHHHhc-CCCEEEE
Confidence            87     78999999865 89999999999987543  34677776   47889999999999999999995 7888899


Q ss_pred             EEeCCCCCCCCCCceeeeecHHHHHHHHHhccccc
Q psy4847         149 HRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMD  183 (396)
Q Consensus       149 ~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~D  183 (396)
                      +        |++|+++||||.+||++.+. +++.+
T Consensus       236 v--------d~~g~lvGivT~~Dil~~i~-~e~~e  261 (278)
T 2yvy_A          236 V--------DEEGRLVGIVTVDDVLDVLE-AEATE  261 (278)
T ss_dssp             E--------CTTSBEEEEEEHHHHHHHC-------
T ss_pred             E--------eCCCeEEEEEEHHHHHHHHH-HHhHH
Confidence            8        88999999999999999987 55543

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.74  E-value=1.1e-17  Score=172.70  Aligned_cols=156  Identities=17%  Similarity=0.224  Sum_probs=136.6

Q ss_pred             CCHHHHHHHHHcccccccccc---------CCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHH
Q psy4847           3 VHPQGLRSFIRVRDHDVTTEF---------NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM   73 (396)
Q Consensus         3 ~~~~Elk~ll~~~~~~~~~e~---------~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~   73 (396)
                      |++++++.++++.     .+.         +.++.+++.++.+++.+.+.+|+++|++  +++++++++++. ++++.|.
T Consensus       111 l~~dd~~~ll~~l-----~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~v~v~~~~tv~-ea~~~~~  182 (473)
T 2zy9_A          111 LSLDDLADALQAV-----RKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLR  182 (473)
T ss_dssp             SCHHHHHHHHHHH-----HHSCHHHHHHHTTSSCHHHHHHHHHHHTSCTTBSTTTCBS--CEEEECTTCBHH-HHHHHHH
T ss_pred             CCHHHHHHHHHhC-----CHhHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCHHHhCCC--CceEeCCCCcHH-HHHHHHH
Confidence            6788888888875     344         7899999999999999999999999997  499999999999 9999998


Q ss_pred             Hc-----CCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEE
Q psy4847          74 KS-----GYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFV  148 (396)
Q Consensus        74 ~~-----g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV  148 (396)
                      ++     +++++||++++ ++++|+|+.+||+...+  ..+++++|   .+++++|++++++.++++.|++. +.+.++|
T Consensus       183 ~~~~~~~~~~~ipVvd~~-~~lvGiVt~~Dll~~~~--~~~v~dim---~~~~~~v~~~~~l~ea~~~m~~~-~~~~lpV  255 (473)
T 2zy9_A          183 RAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVADP--RTRVAEIM---NPKVVYVRTDTDQEEVARLMADY-DFTVLPV  255 (473)
T ss_dssp             HHGGGCSEEEEEEEECTT-SBEEEEEEHHHHHHSCT--TSBGGGTS---BSSCCCEESSSBHHHHHHHHHHH-TCSEEEE
T ss_pred             hccCCcCceeEEEEECCC-CcEEEEEEHHHHhcCCC--CCcHHHHh---CCCCeEEeCCCcHHHHHHHHHhc-CCcEEEE
Confidence            86     47999999865 89999999999987544  34777776   47889999999999999999995 8899999


Q ss_pred             EEeCCCCCCCCCCceeeeecHHHHHHHHHhcccc
Q psy4847         149 HRVNNEGEGDPFYETVGLITLEDVIEELIQAEIM  182 (396)
Q Consensus       149 ~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~  182 (396)
                      +        |++|+++|+||.+||++.+. ++..
T Consensus       256 V--------De~g~lvGiIT~~Dil~~i~-~e~~  280 (473)
T 2zy9_A          256 V--------DEEGRLVGIVTVDDVLDVLE-AEAT  280 (473)
T ss_dssp             E--------CTTSBEEEEEEHHHHHHHHH-HHHH
T ss_pred             E--------cCCCEEEEEEehHhhHHHHH-HHhh
Confidence            9        99999999999999999987 4543

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.73  E-value=8.1e-18  Score=149.07  Aligned_cols=130  Identities=16%  Similarity=0.188  Sum_probs=107.4

Q ss_pred             HHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc---
Q psy4847          30 EVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD---  106 (396)
Q Consensus        30 E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~---  106 (396)
                      ++..+.++  +++.+|+|||++.  ++++++++++. ++++.|.+++++++||++++ |+++|+|+.+||+......   
T Consensus         7 ~~~~~~~~--l~~~~V~diM~~~--v~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dll~~~~~~~~~   80 (170)
T 4esy_A            7 RRRAIARA--IRQVPIRDILTSP--VVTVREDDTLD-AVAKTMLEHQIGCAPVVDQN-GHLVGIITESDFLRGSIPFWIY   80 (170)
T ss_dssp             HHHHHHHH--HHTSBGGGGCCSC--CCCEETTSBHH-HHHHHHHHTTCSEEEEECTT-SCEEEEEEGGGGGGGTCCTTHH
T ss_pred             HHHHHHHH--HcCCCHHHhcCCC--CcEECCcCcHH-HHHHHHHHcCCeEEEEEcCC-ccEEEEEEHHHHHHHHhhcccc
Confidence            34455555  5788999999964  89999999999 99999999999999999875 8999999999997532110   


Q ss_pred             -----------------------ccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCce
Q psy4847         107 -----------------------NTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYET  163 (396)
Q Consensus       107 -----------------------~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~  163 (396)
                                             ..++.++   |.+++++|.+++++.++++.|.+. +.|.++|+        | .|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i---m~~~~~tv~~~~~l~~a~~~m~~~-~~~~lpVv--------d-~g~l  147 (170)
T 4esy_A           81 EASEILSRAIPAPEVEHLFETGRKLTASAV---MTQPVVTAAPEDSVGSIADQMRRH-GIHRIPVV--------Q-DGVP  147 (170)
T ss_dssp             HHHHHHTTTSCHHHHHHHHHHHTTCBHHHH---CBCCSCCBCTTSBHHHHHHHHHHT-TCSEEEEE--------E-TTEE
T ss_pred             chhhhhhhccchhhHHhhhccccccchhhh---cccCcccCCcchhHHHHHHHHHHc-CCcEEEEE--------E-CCEE
Confidence                                   1234444   568999999999999999999995 78888887        6 4899


Q ss_pred             eeeecHHHHHHHHHh
Q psy4847         164 VGLITLEDVIEELIQ  178 (396)
Q Consensus       164 vGIVTleDIiEeli~  178 (396)
                      +||||..||++.|+.
T Consensus       148 vGivt~~Dil~~l~~  162 (170)
T 4esy_A          148 VGIVTRRDLLKLLLL  162 (170)
T ss_dssp             EEEEEHHHHTTTSCC
T ss_pred             EEEEEHHHHHHHHHh
Confidence            999999999999874

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.72  E-value=7.6e-17  Score=155.72  Aligned_cols=157  Identities=13%  Similarity=0.183  Sum_probs=129.2

Q ss_pred             CCHHHHHHHHHccccccc-cccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHc-----C
Q psy4847           3 VHPQGLRSFIRVRDHDVT-TEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS-----G   76 (396)
Q Consensus         3 ~~~~Elk~ll~~~~~~~~-~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~-----g   76 (396)
                      |.+++...+++....... .-...|+.+++..+.+++.+.+.+|+++|++.  +++++.++++. ++++.|.++     +
T Consensus        96 l~~d~~~~ll~~l~~~~~~~i~~~l~~~e~~~i~~ll~~~~~~v~~iM~~~--~~~v~~~~tv~-ea~~~~~~~~~~~~~  172 (286)
T 2oux_A           96 MYTDNAVDLLNMLDKSQKAKYLSLLSSEEAGEIKELLHYEDETAGAIMTTE--FVSIVANQTVR-SAMYVLKNQADMAET  172 (286)
T ss_dssp             SCHHHHHHHHHHSCHHHHHHHHHTSCHHHHHHHHHHTTSCTTBHHHHCBSC--CCEECSSSBHH-HHHHHHHHHCSSCSC
T ss_pred             CCHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHHHhcCChHHHHHhCCCC--ceEECCCCcHH-HHHHHHHHcccCccc
Confidence            445555555554321111 11245888899999999999999999999974  88999999999 999999987     8


Q ss_pred             CcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCC
Q psy4847          77 YSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGE  156 (396)
Q Consensus        77 ~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~  156 (396)
                      ++++||++++ ++++|+|+.+||+...+  ..++.++|   .+++++|++++++.+++..|.++ +.+.++|+       
T Consensus       173 ~~~~pVvd~~-~~lvGivt~~dll~~~~--~~~v~~im---~~~~~~v~~~~~l~ea~~~m~~~-~~~~lpVV-------  238 (286)
T 2oux_A          173 IYYVYVVDQE-NHLVGVISLRDLIVNDD--DTLIADIL---NERVISVHVGDDQEDVAQTIRDY-DFLAVPVT-------  238 (286)
T ss_dssp             CSEEEEECTT-CBEEEEEEHHHHTTSCT--TSBHHHHS---BSCCCCEETTSBHHHHHHHHHHH-TCSEEEEE-------
T ss_pred             eeEEEEEcCC-CeEEEEEEHHHHHcCCC--CCcHHHHc---CCCCeeecCCCCHHHHHHHHHHc-CCcEEEEE-------
Confidence            8999999865 89999999999987644  34677776   47889999999999999999995 78888888       


Q ss_pred             CCCCCceeeeecHHHHHHHHH
Q psy4847         157 GDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       157 ~De~g~~vGIVTleDIiEeli  177 (396)
                       |++|+++||||..||++.+.
T Consensus       239 -d~~g~lvGiIT~~Dil~~i~  258 (286)
T 2oux_A          239 -DYDDHLLGIVTVDDIIDVID  258 (286)
T ss_dssp             -CTTCBEEEEEEHHHHHHHHH
T ss_pred             -cCCCeEEEEEEHHHHHHHHH
Confidence             88899999999999999987

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.68  E-value=1.7e-16  Score=136.01  Aligned_cols=123  Identities=24%  Similarity=0.264  Sum_probs=105.0

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC----------------
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP----------------  104 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~----------------  104 (396)
                      ...+|+++|++..++++++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+....                
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~   80 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVD-EALELLVENRITGFPVIDED-WKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLS   80 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHTTCC----CCHHHHHHHTC--
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHH-HHHHHHHHcCCceEEEEeCC-CeEEEEEEHHHHHHhhcccCcccchHHHHHHHH
Confidence            4578999999976789999999999 99999999999999999865 79999999999975321                


Q ss_pred             -ccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         105 -DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       105 -~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                       ....++.++|   .+++++|.+++++.+++..|.+. +.+.++|+        |+.|+++|+||..||++.+.
T Consensus        81 ~~~~~~v~~~m---~~~~~~v~~~~~l~~a~~~~~~~-~~~~l~Vv--------d~~g~~~Giit~~dil~~~~  142 (152)
T 4gqw_A           81 KTNGKLVGDLM---TPAPLVVEEKTNLEDAAKILLET-KYRRLPVV--------DSDGKLVGIITRGNVVRAAL  142 (152)
T ss_dssp             ---CCBHHHHS---EESCCCEESSSBHHHHHHHHHHS-SCCEEEEE--------CTTSBEEEEEEHHHHHHHHH
T ss_pred             HhccccHHHhc---CCCceEECCCCcHHHHHHHHHHC-CCCEEEEE--------CCCCcEEEEEEHHHHHHHHH
Confidence             1123556655   46788999999999999999995 77788888        88899999999999999998

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.68  E-value=2.9e-16  Score=133.26  Aligned_cols=129  Identities=18%  Similarity=0.192  Sum_probs=105.8

Q ss_pred             hcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc-ccCCc---cccchhhh
Q psy4847          38 LELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA-LVDPD---DNTPLKTL  113 (396)
Q Consensus        38 lel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl-~~~~~---~~~~l~~v  113 (396)
                      +.|...+|+++|++  ++.+++.++++. ++++.|.+++++.+||++++ ++++|+|+.+||+ .....   ...++.++
T Consensus         2 ~~l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~   77 (138)
T 2yzi_A            2 VMDMKAPIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGLPYDIPVERI   77 (138)
T ss_dssp             -CCTTSBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCCCTTSBGGGT
T ss_pred             cchhhhhHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHhcCCcccCCHHHH
Confidence            45788999999985  488999999999 99999999999999999854 8999999999996 33221   23455655


Q ss_pred             hhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhcccccc
Q psy4847         114 CQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDE  184 (396)
Q Consensus       114 ~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~DE  184 (396)
                      |   .++++++.+++++.+++..|.+. +.+.+ |+        |+.|+++|+||..||++.+. .++..+
T Consensus        78 m---~~~~~~v~~~~~l~~~~~~m~~~-~~~~l-Vv--------d~~g~~~Giit~~dil~~~~-~~~~~~  134 (138)
T 2yzi_A           78 M---TRNLITANVNTPLGEVLRKMAEH-RIKHI-LI--------EEEGKIVGIFTLSDLLEASR-RRLETA  134 (138)
T ss_dssp             C---BCSCCEEETTSBHHHHHHHHHHH-TCSEE-EE--------EETTEEEEEEEHHHHHHHHH-CCSCCC
T ss_pred             h---hCCCeEECCCCcHHHHHHHHHhc-CCCEE-EE--------CCCCCEEEEEEHHHHHHHHH-HHHHhh
Confidence            5   57889999999999999999986 66656 76        77799999999999999997 455443

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.67  E-value=2.8e-16  Score=136.25  Aligned_cols=131  Identities=15%  Similarity=0.128  Sum_probs=103.9

Q ss_pred             HHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc---------
Q psy4847          35 SGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD---------  105 (396)
Q Consensus        35 ~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~---------  105 (396)
                      .....+...+|+++|++..++++++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+.....         
T Consensus         3 ~~~~~l~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~   80 (157)
T 2emq_A            3 WEHNEFMQMTVKPFLIPADKVAHVQPGNYLD-HALLVLTKTGYSAIPVLDTS-YKLHGLISMTMMMDAILGLERIEFERL   80 (157)
T ss_dssp             -------CCBSTTTCEEGGGSCCBCTTSBHH-HHHHHHHHSSSSEEEEECTT-CCEEEEEEHHHHHHHSBCSSSBCGGGG
T ss_pred             hhHhhHhhCcHHhhccCCccceEECCCCcHH-HHHHHHHHCCceEEEEEcCC-CCEEEEeeHHHHHHHHhcccccchHHh
Confidence            3445578899999999855688999999999 99999999999999999865 789999999999754221         


Q ss_pred             cccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhcccc
Q psy4847         106 DNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIM  182 (396)
Q Consensus       106 ~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~  182 (396)
                      ...++.++|   .+++++|++++++.+++..|.+. +.  ++|+        |+.|+++|+||..||++.+. ....
T Consensus        81 ~~~~v~~~m---~~~~~~v~~~~~l~~a~~~m~~~-~~--l~Vv--------d~~g~~~Giit~~dil~~~~-~~~~  142 (157)
T 2emq_A           81 ETMKVEEVM---NRNIPRLRLDDSLMKAVGLIVNH-PF--VCVE--------NDDGYFAGIFTRREVLKQLN-KQLH  142 (157)
T ss_dssp             GTCBGGGTC---BCCCCEEETTSBHHHHHHHHHHS-SE--EEEE--------CSSSSEEEEEEHHHHHHHHH-HTTC
T ss_pred             cCCcHHHHh---CCCCceecCCCcHHHHHHHHhhC-CE--EEEE--------cCCCeEEEEEEHHHHHHHHH-HHhh
Confidence            234555554   57889999999999999999984 44  6676        77899999999999999987 3443

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.67  E-value=1.7e-16  Score=136.77  Aligned_cols=123  Identities=15%  Similarity=0.126  Sum_probs=104.2

Q ss_pred             cccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC---------ccccc
Q psy4847          39 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP---------DDNTP  109 (396)
Q Consensus        39 el~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~---------~~~~~  109 (396)
                      .|...+|+++|+|..++.+++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+....         ....+
T Consensus        11 ~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~   88 (150)
T 3lqn_A           11 EFQQIFVKDLMISSEKVAHVQIGNGLE-HALLVLVKSGYSAIPVLDPM-YKLHGLISTAMILDGILGLERIEFERLEEMK   88 (150)
T ss_dssp             HHHHCBHHHHSEEGGGSCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHTBCSSSBCGGGGGGCB
T ss_pred             hhhcCChhhcccCCCceEEECCCCcHH-HHHHHHHHcCCcEEEEECCC-CCEEEEEEHHHHHHHHHhhcccchhHHhcCC
Confidence            467899999999877788999999999 99999999999999999765 89999999999974321         11234


Q ss_pred             hhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         110 LKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       110 l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      +.++|   .+++++|.+++++.+++..|.+. +.  ++|+        |+.|+++|+||..||++.+.
T Consensus        89 v~~~m---~~~~~~v~~~~~l~~a~~~~~~~-~~--l~Vv--------d~~g~~~Giit~~dil~~l~  142 (150)
T 3lqn_A           89 VEQVM---KQDIPVLKLEDSFAKALEMTIDH-PF--ICAV--------NEDGYFEGILTRRAILKLLN  142 (150)
T ss_dssp             GGGTC---BSSCCEEETTCBHHHHHHHHHHC-SE--EEEE--------CTTCBEEEEEEHHHHHHHHH
T ss_pred             HHHHh---cCCCceeCCCCCHHHHHHHHHhC-CE--EEEE--------CCCCcEEEEEEHHHHHHHHH
Confidence            55554   57889999999999999999984 43  6676        88899999999999999987

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.66  E-value=1.9e-16  Score=153.96  Aligned_cols=143  Identities=11%  Similarity=0.117  Sum_probs=118.8

Q ss_pred             CCCHHHHHHHHHHhcc-cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC
Q psy4847          25 DLEKDEVNIISGALEL-RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD  103 (396)
Q Consensus        25 ~l~~~E~~~i~~alel-~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~  103 (396)
                      .++++|..++.++++| .+.+|+|+|+|+.++++++.++++. ++++.|.+++++++||++++.++++|+|+.+||+...
T Consensus         3 ~~~~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~-~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~   81 (334)
T 2qrd_G            3 DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVI   81 (334)
T ss_dssp             SHHHHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHH-HHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHH
Confidence            4667899999999994 5599999999999999999999999 9999999999999999988668999999999997421


Q ss_pred             --------Ccc------ccchhhhhh----hhcCCc--eEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCc-
Q psy4847         104 --------PDD------NTPLKTLCQ----FYQNSC--YFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYE-  162 (396)
Q Consensus       104 --------~~~------~~~l~~v~~----~~~~~v--~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~-  162 (396)
                              ..+      ..++..+.+    +|.+++  .+|++++++.++++.|.+. +.+.++|+        |++|+ 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vv--------d~~~~~  152 (334)
T 2qrd_G           82 KYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKS-RARRIPLI--------DVDGET  152 (334)
T ss_dssp             HHHHHHCSCGGGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHS-CCSEEEEE--------EEETTT
T ss_pred             HHHhhccCCccHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHC-CceEEEEE--------eCCCCc
Confidence                    111      334444432    234566  8999999999999999985 78888888        65554 


Q ss_pred             ----eeeeecHHHHHHHHH
Q psy4847         163 ----TVGLITLEDVIEELI  177 (396)
Q Consensus       163 ----~vGIVTleDIiEeli  177 (396)
                          ++|+||.+||++.+.
T Consensus       153 ~~~~~~Givt~~dl~~~~~  171 (334)
T 2qrd_G          153 GSEMIVSVLTQYRILKFIS  171 (334)
T ss_dssp             TEEEEEEEEEHHHHHHHHH
T ss_pred             CccceEEEeeHHHHHHHHH
Confidence                999999999999987

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.66  E-value=4.2e-16  Score=131.42  Aligned_cols=121  Identities=17%  Similarity=0.179  Sum_probs=103.3

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--CC-ccccchhhhhhh
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--DP-DDNTPLKTLCQF  116 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~~-~~~~~l~~v~~~  116 (396)
                      |.+.+|+++|++.  +.+++.++++. ++++.|.+++++++||++ + ++++|+|+.+||+..  .. ....++.++|  
T Consensus         1 l~~~~v~~im~~~--~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~~--   73 (133)
T 2ef7_A            1 MEEEIVKEYMKTQ--VISVTKDAKLN-DIAKVMTEKNIGSVIVVD-G-NKPVGIITERDIVKAIGKGKSLETKAEEFM--   73 (133)
T ss_dssp             CCCCBGGGTSBCS--CCEEETTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHTTCCTTCBGGGTS--
T ss_pred             CCcccHHHhccCC--CEEECCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEcHHHHHHHHhcCCCcccCHHHHc--
Confidence            4678999999974  78899999999 999999999999999998 4 799999999999753  11 1234666665  


Q ss_pred             hcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         117 YQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       117 ~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                       .+++.+|++++++.+++..|.+. +.+.++|+        |+.|+++|+||..||++.+.
T Consensus        74 -~~~~~~v~~~~~l~~~~~~~~~~-~~~~l~Vv--------d~~g~~~Giit~~dll~~~~  124 (133)
T 2ef7_A           74 -TASLITIREDSPITGALALMRQF-NIRHLPVV--------DDKGNLKGIISIRDITRAID  124 (133)
T ss_dssp             -EECCCCEETTSBHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHHHHHH
T ss_pred             -CCCCEEECCCCCHHHHHHHHHHc-CCCEEEEE--------CCCCeEEEEEEHHHHHHHHH
Confidence             46889999999999999999996 67777787        87899999999999999986

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.65  E-value=2.6e-16  Score=130.54  Aligned_cols=119  Identities=16%  Similarity=0.240  Sum_probs=101.9

Q ss_pred             cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCce
Q psy4847          43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCY  122 (396)
Q Consensus        43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~  122 (396)
                      ++|+++|++.  +.+++.++++. ++++.|.+++++.+||++++ ++++|+|+.+||+........++.++|   .+++.
T Consensus         1 ~~v~~im~~~--~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~v~~~~---~~~~~   73 (122)
T 3kpb_A            1 TLVKDILSKP--PITAHSNISIM-EAAKILIKHNINHLPIVDEH-GKLVGIITSWDIAKALAQNKKTIEEIM---TRNVI   73 (122)
T ss_dssp             CBHHHHCCSC--CCCEETTSBHH-HHHHHHHHHTCSCEEEECTT-SBEEEEECHHHHHHHHHTTCCBGGGTS---BSSCC
T ss_pred             CchHHhhCCC--CEEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHHHHHHhcccCHHHHh---cCCCe
Confidence            4789999974  78999999999 99999999999999999865 899999999999864322233666665   47888


Q ss_pred             EEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         123 FVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       123 ~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      ++++++++.+++..|.+. +.+.++|+        |++|+++|+||..||++.+.
T Consensus        74 ~v~~~~~l~~~~~~~~~~-~~~~l~Vv--------d~~g~~~Givt~~dl~~~l~  119 (122)
T 3kpb_A           74 TAHEDEPVDHVAIKMSKY-NISGVPVV--------DDYRRVVGIVTSEDISRLFG  119 (122)
T ss_dssp             CEETTSBHHHHHHHHHHH-TCSEEEEE--------CTTCBEEEEEEHHHHHHHHC
T ss_pred             EECCCCCHHHHHHHHHHh-CCCeEEEE--------CCCCCEEEEEeHHHHHHHhh
Confidence            999999999999999985 67777787        88899999999999999986

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.65  E-value=7.6e-16  Score=130.44  Aligned_cols=122  Identities=22%  Similarity=0.254  Sum_probs=103.0

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhh-cccCCc---cccchhhhhh
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL-ALVDPD---DNTPLKTLCQ  115 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDL-l~~~~~---~~~~l~~v~~  115 (396)
                      |.+.+|+++|++.  +.+++.++++. ++++.|.+++++++||++++ ++++|+|+.+|| +.....   ...++.++| 
T Consensus         5 l~~~~v~~im~~~--~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m-   79 (138)
T 2p9m_A            5 LKNIKVKDVMTKN--VITAKRHEGVV-EAFEKMLKYKISSLPVIDDE-NKVIGIVTTTDIGYNLIRDKYTLETTIGDVM-   79 (138)
T ss_dssp             CTTCBGGGTSBCS--CCCEETTSBHH-HHHHHHHHHTCCEEEEECTT-CBEEEEEEHHHHHHHHTTTCCCSSCBHHHHS-
T ss_pred             cccCCHHHhhcCC--ceEECCCCcHH-HHHHHHHHCCCcEEEEECCC-CeEEEEEEHHHHHHHHHhhcccCCcCHHHHh-
Confidence            5688999999864  78899999999 99999999999999999765 799999999999 643221   234566665 


Q ss_pred             hhcCCceEEcCCCCHHHHHHHHHhcCC-----ceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         116 FYQNSCYFVFEDTTLDVLLKQFKEGIK-----GHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       116 ~~~~~v~~V~~dt~L~~~L~~f~~~~~-----~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                        .+++.++++++++.+++..|.+. +     .+.++|+        |+.|+++|+||..||++.+.
T Consensus        80 --~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~~~~l~Vv--------d~~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           80 --TKDVITIHEDASILEAIKKMDIS-GKKEEIINQLPVV--------DKNNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             --CSSCCCEETTSBHHHHHHHHTCC------CCCEEEEE--------CTTSBEEEEEEHHHHHHHHH
T ss_pred             --CCCcEEECCCCCHHHHHHHHHhc-CCccccccEEEEE--------CCCCeEEEEEEHHHHHHHHH
Confidence              47889999999999999999985 6     7777787        87899999999999999886

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.65  E-value=4.2e-16  Score=137.70  Aligned_cols=122  Identities=20%  Similarity=0.233  Sum_probs=104.1

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC------------------
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD------------------  103 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~------------------  103 (396)
                      ..+|+++|++..++++++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+...                  
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~   80 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVD-DALELLVEKKVTGLPVIDDN-WTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS   80 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHTCC-------------------
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CeEEEEEEHHHHHhhhhhccccCCcccccccccc
Confidence            358999999976789999999999 99999999999999999865 7999999999997421                  


Q ss_pred             -------------CccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHH
Q psy4847         104 -------------PDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLE  170 (396)
Q Consensus       104 -------------~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTle  170 (396)
                                   .....++.++|   .+++++|.+++++.+++..|.+. +.+.++|+        |+.|+++||||..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~v~~~m---~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~g~~vGiit~~  148 (180)
T 3sl7_A           81 TWKTFNELQKLISKTYGKVVGDLM---TPSPLVVRDSTNLEDAARLLLET-KFRRLPVV--------DADGKLIGILTRG  148 (180)
T ss_dssp             CCCSHHHHHHHHHTTTTCBHHHHS---EESCCCEETTSBHHHHHHHHTTS-TTCEEEEE--------CTTCBEEEEEEHH
T ss_pred             hhhhhHHHHHHHhccccccHHHHh---CCCceEeCCCCcHHHHHHHHHHc-CCCEEEEE--------CCCCeEEEEEEHH
Confidence                         01123555555   47788999999999999999995 78888888        8889999999999


Q ss_pred             HHHHHHH
Q psy4847         171 DVIEELI  177 (396)
Q Consensus       171 DIiEeli  177 (396)
                      ||++.+.
T Consensus       149 dil~~~~  155 (180)
T 3sl7_A          149 NVVRAAL  155 (180)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999997

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.64  E-value=5.9e-16  Score=135.02  Aligned_cols=128  Identities=16%  Similarity=0.131  Sum_probs=105.0

Q ss_pred             cccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC---------ccccc
Q psy4847          39 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP---------DDNTP  109 (396)
Q Consensus        39 el~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~---------~~~~~  109 (396)
                      .+...+|+++|+++.++++++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+....         ....+
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~   87 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQIT   87 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSB
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CCEEEEeEHHHHHHHhhhhcccchhhhccCC
Confidence            577899999999865688999999999 99999999999999999865 79999999999975311         12345


Q ss_pred             hhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhccccc
Q psy4847         110 LKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMD  183 (396)
Q Consensus       110 l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~D  183 (396)
                      +.++|   .+++++|.+++++.+++..|.+. +.  ++|+        |+.|+++|+||..||++.+. .++..
T Consensus        88 v~~~m---~~~~~~v~~~~~l~~a~~~m~~~-~~--lpVv--------d~~g~~vGiit~~dil~~~~-~~~~~  146 (159)
T 1yav_A           88 VEEVM---LTDIPRLHINDPIMKGFGMVINN-GF--VCVE--------NDEQVFEGIFTRRVVLKELN-KHIRS  146 (159)
T ss_dssp             HHHHS---BCSCCEEETTSBHHHHHHHTTTC-SE--EEEE--------CTTCBEEEEEEHHHHHHHHH-HHC--
T ss_pred             HHHhc---CCCCceEcCCCCHHHHHHHHHhC-CE--EEEE--------eCCCeEEEEEEHHHHHHHHH-HHHHh
Confidence            55555   57889999999999999999984 43  6677        77899999999999999987 45544

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.63  E-value=7.9e-16  Score=129.46  Aligned_cols=120  Identities=11%  Similarity=0.012  Sum_probs=103.1

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccc---cchhhhhhhh
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDN---TPLKTLCQFY  117 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~---~~l~~v~~~~  117 (396)
                      .+.+|+++|++.  +.+++.++++. ++++.|.+++++.+||+++  ++++|+|+.+||+.......   .++.++|   
T Consensus         3 ~s~~v~~~m~~~--~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~~~~~~~v~~~m---   74 (128)
T 3gby_A            3 ASVTFSYLAETD--YPVFTLGGSTA-DAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPTVKEKLGEEL---   74 (128)
T ss_dssp             TTCBGGGGCBCC--SCCEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSSCCTTCBCCGGG---
T ss_pred             cceEHHHhhcCC--cceECCCCCHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhCCcccCcHHHHc---
Confidence            468999999965  78899999999 9999999999999999987  89999999999986533221   3466665   


Q ss_pred             cCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         118 QNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       118 ~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      .++++++.+++++.+++..|.+. +.+.++|+        |++|+++|+||..||++.+.
T Consensus        75 ~~~~~~v~~~~~l~~~~~~~~~~-~~~~lpVv--------d~~g~~~Giit~~dll~~l~  125 (128)
T 3gby_A           75 LETVRSYRPGEQLFDNLISVAAA-KCSVVPLA--------DEDGRYEGVVSRKRILGFLA  125 (128)
T ss_dssp             CBCCCCBCTTSBGGGSHHHHHHC-SSSEEEEE--------CTTCBEEEEEEHHHHHHHHH
T ss_pred             cCCCcEECCCCCHHHHHHHHHhC-CCcEEEEE--------CCCCCEEEEEEHHHHHHHHH
Confidence            47888999999999999999995 77767777        88899999999999999985

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.63  E-value=2.6e-16  Score=138.50  Aligned_cols=130  Identities=18%  Similarity=0.231  Sum_probs=106.0

Q ss_pred             cccccccccccccC-CCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC-----Cccccchhh
Q psy4847          39 ELRRKIVGDVMTKL-EDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD-----PDDNTPLKT  112 (396)
Q Consensus        39 el~~~tV~dIMtp~-~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~-----~~~~~~l~~  112 (396)
                      .+...+|+|+|+|. .++.+++.++++. ++++.|.+++++.+||++++ ++++|+|+.+||+...     .....++.+
T Consensus        20 ~l~~~~v~dim~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~   97 (165)
T 3fhm_A           20 QGMATFVKDLLDRKGRDVVTVGPDVSIG-EAAGTLHAHKIGAVVVTDAD-GVVLGIFTERDLVKAVAGQGAASLQQSVSV   97 (165)
T ss_dssp             SSSSCBHHHHHHHHCSCCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHGGGGGTSBGGG
T ss_pred             hhhhcCHHHHhccCCCCCeEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHHhcCCccccCCHHH
Confidence            46789999999984 4688999999999 99999999999999999865 7999999999997531     112245666


Q ss_pred             hhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhcccccc
Q psy4847         113 LCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDE  184 (396)
Q Consensus       113 v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~DE  184 (396)
                      +|   .+++++|.+++++.+++..|.+. +.+.++|+        |+ |+++|+||..||++.+. .+..++
T Consensus        98 ~m---~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~-g~~~Giit~~dil~~~~-~~~~~~  155 (165)
T 3fhm_A           98 AM---TKNVVRCQHNSTTDQLMEIMTGG-RFRHVPVE--------EN-GRLAGIISIGDVVKARI-GEIEAE  155 (165)
T ss_dssp             TS---BSSCCCBCTTCBHHHHHHHHHHH-TCSEEEEE--------ET-TEEEEEEEHHHHHHHTT-CC----
T ss_pred             Hh---cCCCeEECCCCcHHHHHHHHHHc-CCCEEEEE--------EC-CEEEEEEEHHHHHHHHH-HHHHHH
Confidence            65   47889999999999999999985 67777777        77 99999999999999997 455443

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.63  E-value=2.9e-16  Score=135.74  Aligned_cols=134  Identities=16%  Similarity=0.222  Sum_probs=100.5

Q ss_pred             CCHHHHHHHHHHhcccc---cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          26 LEKDEVNIISGALELRR---KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        26 l~~~E~~~i~~alel~~---~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      +.+++.......-.+..   .+|+++|+++.++.++++++++. ++++.|.+++++.+||++++ ++++|+|+.+||+..
T Consensus         8 f~~~~~~~~~~~~~l~~~l~~~v~dim~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~   85 (149)
T 3k2v_A            8 FTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVGLQATLR-DALLEITRKNLGMTAICDDD-MNIIGIFTDGDLRRV   85 (149)
T ss_dssp             ------------CHHHHHTTSBGGGTSBCGGGSCEECTTCBHH-HHHHHHHHHTSSEEEEECTT-CBEEEEEEHHHHHHH
T ss_pred             CCHHHhhhcCCCchhchhcccCHHHHhcCCCCCeEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CcEEEEecHHHHHHH
Confidence            34444444444433333   48999999866689999999999 99999999999999999865 899999999999753


Q ss_pred             CCc----cccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         103 DPD----DNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       103 ~~~----~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      ...    ...++.++|   .+++.+|.+++++.+++..|.+. +.+.++|+        |+. +++|+||..||++
T Consensus        86 ~~~~~~~~~~~v~~~m---~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~-~~~Giit~~dil~  148 (149)
T 3k2v_A           86 FDTGVDMRDASIADVM---TRGGIRIRPGTLAVDALNLMQSR-HITCVLVA--------DGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             HCSSSCCTTCBHHHHS---EESCCEECTTCBHHHHHHHHHHH-TCSEEEEE--------ETT-EEEEEEEHHHHTC
T ss_pred             HhcCCCcccCcHHHHc---CCCCeEECCCCCHHHHHHHHHHc-CCCEEEEe--------cCC-EEEEEEEHHHhhc
Confidence            211    234566665   47888999999999999999996 67777787        654 9999999999975

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.63  E-value=1.3e-15  Score=130.10  Aligned_cols=118  Identities=14%  Similarity=0.163  Sum_probs=100.2

Q ss_pred             cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCC--cEEEEEEhhhhccc--CC-ccccchhhhhhhh
Q psy4847          43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRT--NIVTMFYIKDLALV--DP-DDNTPLKTLCQFY  117 (396)
Q Consensus        43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~--~IVGiL~vkDLl~~--~~-~~~~~l~~v~~~~  117 (396)
                      .+|+++|++  ++.+++.++++. ++++.|.+++++++||++++ +  +++|+|+.+||+..  .. ....++.++|   
T Consensus         5 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m---   77 (141)
T 2rih_A            5 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARD-NPKRPVAVVSERDILRAVAQRLDLDGPAMPIA---   77 (141)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETT-EEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGC---
T ss_pred             eEHHHHhcC--CCeEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcceeEEEEEHHHHHHHHhcCCCCCCCHHHHc---
Confidence            579999996  488999999999 99999999999999999875 5  89999999999753  11 1234566665   


Q ss_pred             cCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         118 QNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       118 ~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      .+++++|.++ ++.++++.|.+. +.+.++|+        |+.|+++|+||..||++++.
T Consensus        78 ~~~~~~v~~~-~l~~a~~~m~~~-~~~~l~Vv--------d~~g~~~Giit~~dll~~~~  127 (141)
T 2rih_A           78 NSPITVLDTD-PVHVAAEKMRRH-NIRHVVVV--------NKNGELVGVLSIRDLCFERA  127 (141)
T ss_dssp             BCCCEEETTS-BHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHHSCHH
T ss_pred             CCCCeEEcCC-CHHHHHHHHHHc-CCeEEEEE--------cCCCcEEEEEEHHHHHHHHH
Confidence            5789999999 999999999995 67777887        88899999999999998776

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.63  E-value=7.9e-16  Score=149.52  Aligned_cols=146  Identities=12%  Similarity=0.167  Sum_probs=114.3

Q ss_pred             ccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhh
Q psy4847          20 TTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL   99 (396)
Q Consensus        20 ~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDL   99 (396)
                      +.+.+.+.+.+.+.+...  |.+.+|+|+|+|+.++++++.++++. ++++.|.+++++++||++++.++++|+|+.+||
T Consensus        14 ~~~~~~~~~~~~~~~~~~--l~~~~v~dim~p~~~v~~v~~~~~v~-~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dl   90 (330)
T 2v8q_E           14 NEHSQETPESNSSVYTTF--MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF   90 (330)
T ss_dssp             ---------CCSCHHHHH--HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHH
T ss_pred             ChHhhhccchhhHHHHHH--HHcCcHhhhccCCCcEEEEeCCCcHH-HHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHH
Confidence            356667777777778887  67889999999999999999999999 999999999999999998876799999999999


Q ss_pred             cccC------Cc------cccchhhhh----hhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCC-CCc
Q psy4847         100 ALVD------PD------DNTPLKTLC----QFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDP-FYE  162 (396)
Q Consensus       100 l~~~------~~------~~~~l~~v~----~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De-~g~  162 (396)
                      +...      +.      ....+..+.    ++|.+++.+|++++++.++++.|.+. +.+.++|+        |+ +|+
T Consensus        91 l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vv--------d~~~~~  161 (330)
T 2v8q_E           91 INILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRN-KIHRLPVI--------DPESGN  161 (330)
T ss_dssp             HHHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHH-TCSCEEEE--------CTTTCC
T ss_pred             HHHHHHHHhccccchhHHhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHC-CCCeEEEE--------eCCCCc
Confidence            7421      00      112233222    33467899999999999999999985 67888888        77 899


Q ss_pred             eeeeecHHHHHHHHH
Q psy4847         163 TVGLITLEDVIEELI  177 (396)
Q Consensus       163 ~vGIVTleDIiEeli  177 (396)
                      ++|+||.+||++.+.
T Consensus       162 ~~Givt~~dl~~~~~  176 (330)
T 2v8q_E          162 TLYILTHKRILKFLK  176 (330)
T ss_dssp             EEEEECHHHHHHHHH
T ss_pred             EEEEEcHHHHHHHHH
Confidence            999999999999886

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.61  E-value=1.8e-15  Score=128.09  Aligned_cols=118  Identities=14%  Similarity=0.188  Sum_probs=100.2

Q ss_pred             ccccccccC-CCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc-cCC----ccccchhhhhhhh
Q psy4847          44 IVGDVMTKL-EDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL-VDP----DDNTPLKTLCQFY  117 (396)
Q Consensus        44 tV~dIMtp~-~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~-~~~----~~~~~l~~v~~~~  117 (396)
                      +|+++|+|+ .++.+++.++++. ++++.|.+++++++||++ + ++++|+|+.+||+. +..    ....++.++|   
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m---   80 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMK-D-EKLVGILTERDFSRKSYLLDKPVKDTQVKEIM---   80 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTS---
T ss_pred             eHHHHHhcCCCCcEEECCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEehHHHHHHHHHcCCCcccCCHHHhc---
Confidence            899999965 5688999999999 999999999999999997 4 79999999999973 221    1234555555   


Q ss_pred             cCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         118 QNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       118 ~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      .+++.+|.+++++.++++.|.+. +.+.++|+        | .|+++|+||..||++.+.
T Consensus        81 ~~~~~~v~~~~~l~~~~~~m~~~-~~~~lpVv--------d-~g~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           81 TRQVAYVDLNNTNEDCMALITEM-RVRHLPVL--------D-DGKVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             BCSCCCBCTTCBHHHHHHHHHHH-TCSEEEEE--------E-TTEEEEEEEHHHHHHHHH
T ss_pred             cCCCeEECCCCcHHHHHHHHHHh-CCCEEEEE--------e-CCEEEEEEEHHHHHHHHH
Confidence            57889999999999999999995 67777787        6 589999999999999987

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.61  E-value=6.2e-16  Score=149.63  Aligned_cols=148  Identities=13%  Similarity=0.159  Sum_probs=120.5

Q ss_pred             ccccCCCCHHHHHHHHHHhcc-cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhh
Q psy4847          20 TTEFNDLEKDEVNIISGALEL-RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKD   98 (396)
Q Consensus        20 ~~e~~~l~~~E~~~i~~alel-~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkD   98 (396)
                      ..+.+.++++|..++.++++| .+.+|+|+|+|+.++++++.+.++. ++++.|.+++++++||++++.++++|+|+.+|
T Consensus         6 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~-~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~D   84 (323)
T 3t4n_C            6 QDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVK-KSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTD   84 (323)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHTTCSCEEEEETTTTEEEEEECHHH
T ss_pred             CCCCCcccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHH-HHHHHHHHcCCceEEEEeCCCCeEEEEEEHHH
Confidence            356678899999999999998 9999999999999999999999999 99999999999999999987679999999999


Q ss_pred             hcccC------Cc-----cc---cchhhhh---hhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCC
Q psy4847          99 LALVD------PD-----DN---TPLKTLC---QFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFY  161 (396)
Q Consensus        99 Ll~~~------~~-----~~---~~l~~v~---~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g  161 (396)
                      ++...      +.     +.   ..+++++   .++.+++.++++++++.+++..|.+. +.+.++|+        |+++
T Consensus        85 l~~~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~~  155 (323)
T 3t4n_C           85 FINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLES-RSGRIPLI--------DQDE  155 (323)
T ss_dssp             HHHHHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHH-TCSEEEEE--------EECT
T ss_pred             HHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhC-CeeEEEEE--------ecCC
Confidence            97421      11     00   1223332   22357788999999999999999985 77888888        5555


Q ss_pred             c-----eeeeecHHHHHHHHH
Q psy4847         162 E-----TVGLITLEDVIEELI  177 (396)
Q Consensus       162 ~-----~vGIVTleDIiEeli  177 (396)
                      .     ++|+||..||++.+.
T Consensus       156 ~~~~~~l~Givt~~di~~~l~  176 (323)
T 3t4n_C          156 ETHREIVVSVLTQYRILKFVA  176 (323)
T ss_dssp             TTCCEEEEEEEEHHHHHHHHH
T ss_pred             CCCccceEEEecHHHHHHHHH
Confidence            4     999999999999987

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.59  E-value=1.9e-15  Score=135.41  Aligned_cols=124  Identities=18%  Similarity=0.176  Sum_probs=104.5

Q ss_pred             cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC-----ccccchhhhhhhh
Q psy4847          43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP-----DDNTPLKTLCQFY  117 (396)
Q Consensus        43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~-----~~~~~l~~v~~~~  117 (396)
                      .+|+++|++  ++++++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+....     ....++.++|   
T Consensus         9 ~~v~~im~~--~~~~v~~~~~l~-ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im---   81 (184)
T 1pvm_A            9 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVM---   81 (184)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTS---
T ss_pred             cCHHHhcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccCcccCCHHHHh---
Confidence            689999985  488999999999 99999999999999999765 79999999999975322     1234556555   


Q ss_pred             cCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhc-cccc
Q psy4847         118 QNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQA-EIMD  183 (396)
Q Consensus       118 ~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~-eI~D  183 (396)
                      .+++++|++++++.++++.|.+. +.+.++|+        |++|+++|+||..||++.+. + ++.+
T Consensus        82 ~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~g~~~Givt~~dll~~~~-~~~~~~  138 (184)
T 1pvm_A           82 RKPIPKVKSDYDVKDVAAYLSEN-GLERCAVV--------DDPGRVVGIVTLTDLSRYLS-RASITD  138 (184)
T ss_dssp             BSSCCEEETTCBHHHHHHHHHHH-TCSEEEEE--------CTTCCEEEEEEHHHHTTTSC-HHHHHH
T ss_pred             CCCCcEECCCCCHHHHHHHHHHc-CCcEEEEE--------cCCCeEEEEEEHHHHHHHHH-hhhHHH
Confidence            47889999999999999999995 77888888        88899999999999999876 4 5544

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.59  E-value=3.7e-15  Score=129.48  Aligned_cols=125  Identities=15%  Similarity=0.228  Sum_probs=104.0

Q ss_pred             cccccccccC----CCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC-----ccccchhhh
Q psy4847          43 KIVGDVMTKL----EDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP-----DDNTPLKTL  113 (396)
Q Consensus        43 ~tV~dIMtp~----~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~-----~~~~~l~~v  113 (396)
                      ++|+|+|++.    .++.+++.++++. ++++.|.+++++++||.+  .++++|+|+.+||+....     ....++.++
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~   83 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVY-DAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQERSSKATRVEEI   83 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHH-HHHHHHHHHTCSEEEEES--SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHH
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHH-HHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHHhccCCccccCHHHH
Confidence            5799999987    6789999999999 999999999999999964  389999999999975311     123466666


Q ss_pred             hhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhcccccc
Q psy4847         114 CQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDE  184 (396)
Q Consensus       114 ~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~DE  184 (396)
                      |   .+++++|.+++++.+++..|.+. +.+.++|+        | .|+++|+||..||++.+. .+..++
T Consensus        84 m---~~~~~~v~~~~~l~~~~~~m~~~-~~~~lpVv--------d-~g~~~Giit~~dil~~l~-~~~~~~  140 (157)
T 4fry_A           84 M---TAKVRYVEPSQSTDECMALMTEH-RMRHLPVL--------D-GGKLIGLISIGDLVKSVI-ADQQFT  140 (157)
T ss_dssp             S---BSSCCCBCTTSBHHHHHHHHHHH-TCSEEEEE--------E-TTEEEEEEEHHHHHHHHH-TTCCCC
T ss_pred             c---CCCCcEECCCCcHHHHHHHHHHc-CCCEEEEE--------E-CCEEEEEEEHHHHHHHHH-HHHHhh
Confidence            5   47889999999999999999995 67777777        6 589999999999999998 454443

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.59  E-value=6.3e-15  Score=128.39  Aligned_cols=120  Identities=21%  Similarity=0.196  Sum_probs=102.5

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcE-EEEEeCCCCcEEEEEEhhhhccc----------------
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSR-IPVYEDRRTNIVTMFYIKDLALV----------------  102 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sr-iPV~~~~~~~IVGiL~vkDLl~~----------------  102 (396)
                      +...+|+++|++.  +.+++.++++. ++++.|.++++++ +||++++  +++|+|+.+||+..                
T Consensus        13 ~~~~~v~~im~~~--~~~v~~~~tl~-ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~~~~~~~~~~~~~~~   87 (157)
T 1o50_A           13 MKVKDVCKLISLK--PTVVEEDTPIE-EIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSGFHFFGFIPKEELIR   87 (157)
T ss_dssp             CBHHHHTTSSCCC--CEEECTTCBHH-HHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHHHHHHCCCC------
T ss_pred             hccccHhhcccCC--CceECCCCCHH-HHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHhhhHHhhhccHHHHH
Confidence            6788999999864  89999999999 9999999999999 9999864  89999999999753                


Q ss_pred             ---CCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         103 ---DPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       103 ---~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                         ......++.++|   .+ +++|.+++++.+++..|.+. +.+.++|+        |+.|+++|+||..||++.+.
T Consensus        88 ~~~~~~~~~~v~~im---~~-~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~g~~vGiit~~dll~~l~  152 (157)
T 1o50_A           88 SSMKRLIAKNASEIM---LD-PVYVHMDTPLEEALKLMIDN-NIQEMPVV--------DEKGEIVGDLNSLEILLALW  152 (157)
T ss_dssp             -CCCCCSSCBHHHHC---BC-CCCBCTTSBHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHHHHHH
T ss_pred             HHHHHHcCCcHHHHc---CC-CeEECCCCCHHHHHHHHHHC-CCcEEEEE--------cCCCEEEEEEEHHHHHHHHH
Confidence               111234566665   46 88999999999999999996 67777787        87899999999999999987

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.59  E-value=1.9e-15  Score=127.38  Aligned_cols=121  Identities=17%  Similarity=0.231  Sum_probs=99.4

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc-ccCCc----cccchhhhh
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA-LVDPD----DNTPLKTLC  114 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl-~~~~~----~~~~l~~v~  114 (396)
                      +.-.+|+++|++.  +.+++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+ .....    ...++.++|
T Consensus         5 ~~~~~v~~im~~~--~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m   80 (133)
T 1y5h_A            5 FTMTTARDIMNAG--VTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELA   80 (133)
T ss_dssp             ---CCHHHHSEET--CCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHH
T ss_pred             hhhcCHHHHhcCC--ceEeCCCCCHH-HHHHHHHHhCCCeEEEECCC-CeEEEEEeHHHHHHHHHhcCCCccccCHHHHh
Confidence            3456899999864  78899999999 99999999999999999754 7999999999997 33211    124566665


Q ss_pred             hhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         115 QFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       115 ~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                         .++++++.+++++.++++.|.+. +.+.++|+        |+ |+++|+||..||++.+.
T Consensus        81 ---~~~~~~v~~~~~l~~~~~~m~~~-~~~~l~Vv--------d~-g~~~Giit~~dil~~l~  130 (133)
T 1y5h_A           81 ---RDSIYYVDANASIQEMLNVMEEH-QVRRVPVI--------SE-HRLVGIVTEADIARHLP  130 (133)
T ss_dssp             ---TTCCCCEETTCCHHHHHHHHHHH-TCSEEEEE--------ET-TEEEEEEEHHHHHHTCC
T ss_pred             ---cCCCEEECCCCCHHHHHHHHHHc-CCCEEEEE--------EC-CEEEEEEEHHHHHHHHH
Confidence               47889999999999999999996 67777777        66 89999999999998875

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.58  E-value=6.3e-15  Score=128.79  Aligned_cols=131  Identities=12%  Similarity=0.159  Sum_probs=106.2

Q ss_pred             HHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC-C---ccc
Q psy4847          32 NIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD-P---DDN  107 (396)
Q Consensus        32 ~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~-~---~~~  107 (396)
                      ..+...  |...+|+++|++   .++++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+... .   ...
T Consensus         8 ~~l~~~--l~~~~v~~im~~---~~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~   80 (159)
T 3fv6_A            8 QLLADK--LKKLQVKDFQSI---PVVIHENVSVY-DAICTMFLEDVGTLFVVDRD-AVLVGVLSRKDLLRASIGQQELTS   80 (159)
T ss_dssp             HHHHHH--HTTCBGGGSCBC---CCEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHTSCSCTTT
T ss_pred             HHHHHH--HhhCCHHHHcCC---CEEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHhhccCcccC
Confidence            334444  577899999986   24899999999 99999999999999999865 7999999999997531 1   123


Q ss_pred             cchhhhhhhhcC--CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCC---ceeeeecHHHHHHHHHhcccc
Q psy4847         108 TPLKTLCQFYQN--SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFY---ETVGLITLEDVIEELIQAEIM  182 (396)
Q Consensus       108 ~~l~~v~~~~~~--~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g---~~vGIVTleDIiEeli~~eI~  182 (396)
                      .++.++|.   +  ++.+|.+++++.+++..|.+. +.+.++|+        |+.|   +++|+||..||++.+.  ++.
T Consensus        81 ~~v~~~m~---~~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~g~~~~~vGiit~~dil~~l~--~~~  146 (159)
T 3fv6_A           81 VPVHIIMT---RMPNITVCRREDYVMDIAKHLIEK-QIDALPVI--------KDTDKGFEVIGRVTKTNMTKILV--SLS  146 (159)
T ss_dssp             CBGGGTSE---ETTSCCCBCTTSBHHHHHHHHHHH-TCSEEEEE--------EECSSSEEEEEEEEHHHHHHHHH--HHH
T ss_pred             cCHHHHHc---CCCCcEEECCCCCHHHHHHHHHHc-CCcEEEEE--------eCCCcceeEEEEEEHHHHHHHHH--HHh
Confidence            46666653   5  788999999999999999985 67777777        6667   9999999999999997  454


Q ss_pred             c
Q psy4847         183 D  183 (396)
Q Consensus       183 D  183 (396)
                      .
T Consensus       147 ~  147 (159)
T 3fv6_A          147 E  147 (159)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.58  E-value=5.7e-15  Score=129.39  Aligned_cols=120  Identities=18%  Similarity=0.128  Sum_probs=100.8

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC------------Ccccc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD------------PDDNT  108 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~------------~~~~~  108 (396)
                      ...+|+++|++.  +++++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+...            .....
T Consensus         3 ~~~~v~dim~~~--~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~   78 (160)
T 2o16_A            3 LMIKVEDMMTRH--PHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFET   78 (160)
T ss_dssp             CCCBGGGTSEES--CCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCC
T ss_pred             CcCcHHHHhcCC--CeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHhhcccccccchhccc
Confidence            457899999874  78899999999 99999999999999999765 7999999999997431            11234


Q ss_pred             chhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         109 PLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       109 ~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      ++.++|   .+++++|.+++++.+++..|.+. +.+.++|+        |+ |+++||||..||++.+.
T Consensus        79 ~v~~im---~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~-g~lvGiit~~dil~~~~  134 (160)
T 2o16_A           79 PLFEVM---HTDVTSVAPQAGLKESAIYMQKH-KIGCLPVV--------AK-DVLVGIITDSDFVTIAI  134 (160)
T ss_dssp             BHHHHS---CSCEEEBCTTSBHHHHHHHHHHT-TCSCEEEE--------ET-TEEEEEECHHHHHHHHH
T ss_pred             CHHHHh---cCCCeEECCCCCHHHHHHHHHHh-CCCEEEEE--------EC-CEEEEEEEHHHHHHHHH
Confidence            566665   57899999999999999999995 67777777        66 89999999999999886

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.58  E-value=6.6e-15  Score=125.09  Aligned_cols=126  Identities=13%  Similarity=0.275  Sum_probs=101.5

Q ss_pred             ccccccccc---ccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC-----ccccch
Q psy4847          39 ELRRKIVGD---VMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP-----DDNTPL  110 (396)
Q Consensus        39 el~~~tV~d---IMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~-----~~~~~l  110 (396)
                      ++-++++++   +|++  ++++++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+....     ....++
T Consensus         4 ~~~~~~v~~~~~~~~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v   79 (144)
T 2nyc_A            4 HFLKIPIGDLNIITQD--NMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSV   79 (144)
T ss_dssp             GGGGSBGGGSSCCBCS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBH
T ss_pred             chhhcchhhcCCCCCC--CceEECCCCcHH-HHHHHHHHcCcceeeEEcCC-CcEEEEEcHHHHHHHhcccccccCCccH
Confidence            355778999   7874  488999999999 99999999999999999865 79999999999975311     123467


Q ss_pred             hhhhhhhc---CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         111 KTLCQFYQ---NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       111 ~~v~~~~~---~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      .++|..-.   +++.+|.+++++.++++.|.+. +.+.++|+        |+.|+++|+||..||++.+.
T Consensus        80 ~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~-~~~~l~Vv--------d~~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           80 GEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKA-RVHRFFVV--------DDVGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             HHHHHHCC------CEECTTSBHHHHHHHHHHH-TCSEEEEE--------CTTSBEEEEEEHHHHHHHHH
T ss_pred             HHHHhcCccccCCCeEECCCCcHHHHHHHHHHC-CCCEEEEE--------CCCCCEEEEEEHHHHHHHHH
Confidence            77664100   1688999999999999999985 67778888        88899999999999999987

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.58  E-value=4e-15  Score=132.17  Aligned_cols=124  Identities=18%  Similarity=0.275  Sum_probs=102.5

Q ss_pred             ccccccccccccCCC--EEEE--eCCCChhHHHHHHHHHcCCcEEEEEe-CCCCcEEEEEEhhhhcccC-----------
Q psy4847          40 LRRKIVGDVMTKLED--VYML--SYDAILDFETVSEIMKSGYSRIPVYE-DRRTNIVTMFYIKDLALVD-----------  103 (396)
Q Consensus        40 l~~~tV~dIMtp~~d--v~~l--~~d~~l~~e~i~~i~~~g~sriPV~~-~~~~~IVGiL~vkDLl~~~-----------  103 (396)
                      +...+|+++|++..+  ++++  +.++++. ++++.|.+++++++||++ ++.++++|+|+.+||+...           
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~-~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~   86 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVV   86 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHH-HHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCcc
Confidence            468899999998744  6677  9999999 999999999999999994 2348999999999997431           


Q ss_pred             -----------------CccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeee
Q psy4847         104 -----------------PDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGL  166 (396)
Q Consensus       104 -----------------~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGI  166 (396)
                                       .....++.++|   .+++++|.+++++.+++..|.+. +.+.++|+        | .|+++||
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~im---~~~~~~v~~~~~l~~a~~~m~~~-~~~~l~Vv--------d-~g~~vGi  153 (185)
T 2j9l_A           87 STSIIYFTEHSPPLPPYTPPTLKLRNIL---DLSPFTVTDLTPMEIVVDIFRKL-GLRQCLVT--------H-NGRLLGI  153 (185)
T ss_dssp             TTCEEECSSSCCCCCTTCCCCEECGGGE---ESSCCEEETTSBHHHHHHHHHHH-TCSEEEEE--------E-TTEEEEE
T ss_pred             ccceeecccCCcccccccccCccHHHhh---CcCCeEeCCCCCHHHHHHHHHhC-CCcEEEEE--------E-CCEEEEE
Confidence                             01223555554   57889999999999999999985 77888887        6 6899999


Q ss_pred             ecHHHHHHHHH
Q psy4847         167 ITLEDVIEELI  177 (396)
Q Consensus       167 VTleDIiEeli  177 (396)
                      ||..||++.+.
T Consensus       154 it~~dll~~l~  164 (185)
T 2j9l_A          154 ITKKDVLKHIA  164 (185)
T ss_dssp             EEHHHHHHHHH
T ss_pred             EEHHHHHHHHH
Confidence            99999999997

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.57  E-value=6.7e-15  Score=122.26  Aligned_cols=117  Identities=15%  Similarity=0.170  Sum_probs=98.6

Q ss_pred             cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC---c-cccchhhhhhhhc
Q psy4847          43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP---D-DNTPLKTLCQFYQ  118 (396)
Q Consensus        43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~---~-~~~~l~~v~~~~~  118 (396)
                      .+|+++|++  ++.+++.++++. ++++.|.+++++++||++ + ++++|+|+.+||+....   . ...++.++|   .
T Consensus         1 m~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m---~   72 (125)
T 1pbj_A            1 MRVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVK-E-GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVM---E   72 (125)
T ss_dssp             -CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEE-T-TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHC---B
T ss_pred             CCHHHhcCC--CceEECCCCcHH-HHHHHHHHcCCCEEEEEe-C-CeeEEEEeHHHHHHHHhcCCcccccCHHHHc---C
Confidence            368999986  478999999999 999999999999999998 4 89999999999975311   1 234566665   4


Q ss_pred             CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         119 NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       119 ~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      +++.++.+++++.++++.|.+. +.+.++|+        |+ |+++|+||..||++.+.
T Consensus        73 ~~~~~v~~~~~l~~~~~~~~~~-~~~~l~Vv--------d~-~~~~Gvit~~dl~~~l~  121 (125)
T 1pbj_A           73 RDLVTISPRATIKEAAEKMVKN-VVWRLLVE--------ED-DEIIGVISATDILRAKM  121 (125)
T ss_dssp             CGGGEECTTSCHHHHHHHHHHH-TCSEEEEE--------ET-TEEEEEEEHHHHHHHHC
T ss_pred             CCCeEECCCCCHHHHHHHHHhc-CCcEEEEE--------EC-CEEEEEEEHHHHHHHHH
Confidence            7889999999999999999985 67777777        66 99999999999999986

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.56  E-value=1e-14  Score=126.78  Aligned_cols=127  Identities=17%  Similarity=0.195  Sum_probs=102.4

Q ss_pred             HHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeC-CCCcEEEEEEhhhhcccCC----c----
Q psy4847          35 SGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYED-RRTNIVTMFYIKDLALVDP----D----  105 (396)
Q Consensus        35 ~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~-~~~~IVGiL~vkDLl~~~~----~----  105 (396)
                      .+.+.+...+|+++|++.  +++++.++++. ++++.|.+++++++||+++ +.++++|+|+.+||+....    .    
T Consensus         5 ~~~~~~~~~~v~dim~~~--~~~v~~~~~~~-~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~   81 (164)
T 2pfi_A            5 GRNIGSHHVRVEHFMNHS--ITTLAKDTPLE-EVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPG   81 (164)
T ss_dssp             -----CCSCBHHHHCBCC--CCCEETTCBHH-HHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------C
T ss_pred             cccccccCCCHHHHcCCC--CeEECCCCcHH-HHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCc
Confidence            345567889999999974  78899999999 9999999999999999986 2489999999999974321    0    


Q ss_pred             cccchhhhhhhhcCC------ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         106 DNTPLKTLCQFYQNS------CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       106 ~~~~l~~v~~~~~~~------v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      ...++.++|.   .+      +.+|.+++++.+++..|.+. +.+.++|+        | .|+++||||..||++.+.
T Consensus        82 ~~~~v~~~m~---~~~~~~~~~~~v~~~~~l~~~~~~m~~~-~~~~lpVv--------d-~g~l~Giit~~dil~~~~  146 (164)
T 2pfi_A           82 HQQCLQDILA---RGCPTEPVTLTLFSETTLHQAQNLFKLL-NLQSLFVT--------S-RGRAVGCVSWVEMKKAIS  146 (164)
T ss_dssp             CCCBHHHHHH---TTCCCBCCCCCEETTCBHHHHHHHHHHT-TCSEEEEE--------E-TTEEEEEEEHHHHHHHHH
T ss_pred             ccchhhhhhc---ccccccCCceEECCCCcHHHHHHHHHHh-CCCEEEEE--------E-CCEEEEEEEHHHHHHHHH
Confidence            1235666664   44      67899999999999999995 77778887        6 589999999999999987

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.51  E-value=7.2e-14  Score=133.41  Aligned_cols=128  Identities=16%  Similarity=0.186  Sum_probs=107.9

Q ss_pred             HHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC--ccccchh
Q psy4847          34 ISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP--DDNTPLK  111 (396)
Q Consensus        34 i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~--~~~~~l~  111 (396)
                      ..+.+.+.+.+|+++|++.  +++++.++++. ++++.|.+++++++||++++ ++++|+++.+|++....  ....++.
T Consensus        84 ~~~~~~~~~~~v~~im~~~--~~~v~~~~~~~-~a~~~m~~~~~~~lpVvd~~-~~lvGivt~~dl~~~~~~~~~~~~v~  159 (296)
T 3ddj_A           84 QGDLYHISTTPIIDYMTPN--PVTVYNTSDEF-TAINIMVTRNFGSLPVVDIN-DKPVGIVTEREFLLLYKDLDEIFPVK  159 (296)
T ss_dssp             HHHHHHHHTSBGGGTSEES--CCCEETTSCHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHGGGGGGSCCCCBHH
T ss_pred             chhhHHHhcccHHHhccCC--CEEEcCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHhhhcccccccHH
Confidence            3445556688999999974  78999999999 99999999999999999765 79999999999975322  1223566


Q ss_pred             hhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         112 TLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       112 ~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      ++|   .+++.++++++++.++++.|.+. +.+.++|+        |++|+++|+||..||++.+.
T Consensus       160 ~~m---~~~~~~v~~~~~l~~~~~~m~~~-~~~~~~Vv--------d~~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          160 VFM---STKVQTIYKEVRLDQAVKLMLRR-GFRRLPVI--------DDDNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             HHS---BCSCCCEETTSBHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHHHHHH
T ss_pred             Hhh---cCCCeEECCCCCHHHHHHHHHHc-CCCEEEEE--------cCCCEEEEEEEHHHHHHHHH
Confidence            655   58889999999999999999995 77788888        88899999999999999986

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.48  E-value=3.3e-13  Score=124.32  Aligned_cols=119  Identities=19%  Similarity=0.183  Sum_probs=102.1

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCC
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNS  120 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~  120 (396)
                      ...+++++|++.  ++++++++++. ++++.|.+++++++||++++ ++++|+|+.+||+...+  ..+++++|   .++
T Consensus        11 ~~~~~~~~~~~~--~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~l~Givt~~dl~~~~~--~~~v~~im---~~~   81 (213)
T 1vr9_A           11 HHMKVKKWVTQD--FPMVEESATVR-ECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDL--DSSVFNKV---SLP   81 (213)
T ss_dssp             --CBGGGGCBSC--SCEEETTCBHH-HHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCT--TSBSGGGC---BCT
T ss_pred             cccCHHHhhcCC--CeEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CEEEEEEEHHHHHhhcC--CCcHHHHc---cCC
Confidence            356799999864  78999999999 99999999999999999755 79999999999987654  33667766   478


Q ss_pred             ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         121 CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       121 v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      ++++.+++++.++++.|.+. +.+.++|+        |+.|+++||||..||++.+.
T Consensus        82 ~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~g~lvGiit~~Dil~~~~  129 (213)
T 1vr9_A           82 DFFVHEEDNITHALLLFLEH-QEPYLPVV--------DEEMRLKGAVSLHDFLEALI  129 (213)
T ss_dssp             TCCEETTSBHHHHHHHHHHC-CCSEEEEE--------CTTCBEEEEEEHHHHHHHHH
T ss_pred             CEEECCCCcHHHHHHHHHHh-CCCEEEEE--------cCCCEEEEEEEHHHHHHHHH
Confidence            89999999999999999995 67777777        77799999999999999886

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.48  E-value=2e-13  Score=141.18  Aligned_cols=153  Identities=14%  Similarity=0.168  Sum_probs=121.8

Q ss_pred             CCHHHHHHHHHccccccccccCCCC-HHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEE
Q psy4847           3 VHPQGLRSFIRVRDHDVTTEFNDLE-KDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIP   81 (396)
Q Consensus         3 ~~~~Elk~ll~~~~~~~~~e~~~l~-~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriP   81 (396)
                      ++++||...+..... .+.-...++ +++.++|..++.     ++++|++  ++++++.++++. ++++.|.+++++++|
T Consensus        55 vt~~eLa~av~~~Gg-~G~i~~~~~~e~~~~~i~~v~~-----~~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~p  125 (491)
T 1zfj_A           55 VTGSKMAIAIARAGG-LGVIHKNMSITEQAEEVRKVKR-----SENGVII--DPFFLTPEHKVS-EAEELMQRYRISGVP  125 (491)
T ss_dssp             TCSHHHHHHHHHTTC-EEEECCSSCHHHHHHHHHHHHH-----HTTTTSS--SCCCBCSSSBHH-HHHHHHHHTTCSEEE
T ss_pred             ccHHHHHHHHHHcCC-ceEEeCCCCHHHHHHHHHHHhh-----HHhcCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEE
Confidence            467788888876411 010011233 567788887765     4789997  488999999999 999999999999999


Q ss_pred             EEeC-CCCcEEEEEEhhhhcccCCccccchhhhhhhhcC-CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCC
Q psy4847          82 VYED-RRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQN-SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDP  159 (396)
Q Consensus        82 V~~~-~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~-~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De  159 (396)
                      |+++ +.++++|+|+.+||+.... ...++.++|   .+ ++++|++++++.++++.|++. +.+.++|+        |+
T Consensus       126 Vvd~~~~~~lvGivt~~Dl~~~~~-~~~~v~~im---~~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVV--------d~  192 (491)
T 1zfj_A          126 IVETLANRKLVGIITNRDMRFISD-YNAPISEHM---TSEHLVTAAVGTDLETAERILHEH-RIEKLPLV--------DN  192 (491)
T ss_dssp             EESCTTTCBEEEEEEHHHHHHCSC-SSSBTTTSC---CCSCCCCEETTCCHHHHHHHHHHT-TCSEEEEE--------CT
T ss_pred             EEEeCCCCEEEEEEEHHHHhhhcc-CCCcHHHHc---CCCCCEEECCCCCHHHHHHHHHHc-CCCEEEEE--------cC
Confidence            9982 3489999999999986432 345677776   35 888999999999999999995 88889998        88


Q ss_pred             CCceeeeecHHHHHHHHH
Q psy4847         160 FYETVGLITLEDVIEELI  177 (396)
Q Consensus       160 ~g~~vGIVTleDIiEeli  177 (396)
                      +|+++|+||.+||++.+.
T Consensus       193 ~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          193 SGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             TSBEEEEEEHHHHHHHHH
T ss_pred             CCcEEEEEEHHHHHHHHh
Confidence            999999999999999987

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.47  E-value=3.5e-14  Score=133.52  Aligned_cols=119  Identities=18%  Similarity=0.221  Sum_probs=100.4

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC---ccccchhhhhhhhc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP---DDNTPLKTLCQFYQ  118 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~---~~~~~l~~v~~~~~  118 (396)
                      +.+|+++|++  ++++++.++++. ++++.|.+++++++||++++ ++++|+++.+|++....   ....++.++|   .
T Consensus        83 ~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~m---~  155 (280)
T 3kh5_A           83 NEPVREIMEE--NVITLKENADID-EAIETFLTKNVGGAPIVNDE-NQLISLITERDVIRALLDKIDENEVIDDYI---T  155 (280)
T ss_dssp             TSBGGGTSBC--SCCCEETTCBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHGGGSCTTCBSGGGC---B
T ss_pred             hhhHHHhcCC--CCEEECCCCCHH-HHHHHHHhCCCCEEEEEcCC-CEEEEEEEHHHHHHHHhhcCCCCCCHHHHh---C
Confidence            6799999997  478999999999 99999999999999999765 89999999999975311   1122555554   5


Q ss_pred             CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         119 NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       119 ~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      +++.++++++++.++++.|.+. +.+.++|+        + +|+++|+||.+||++.+.
T Consensus       156 ~~~~~v~~~~~l~~~~~~~~~~-~~~~~~Vv--------~-~~~~~Givt~~dl~~~~~  204 (280)
T 3kh5_A          156 RDVIVATPGERLKDVARTMVRN-GFRRLPVV--------S-EGRLVGIITSTDFIKLLG  204 (280)
T ss_dssp             CSCCCBCTTCBHHHHHHHHHHH-TCSEEEEE--------E-TTEEEEEEEHHHHHHHHT
T ss_pred             CCCeEECCCCcHHHHHHHHHHc-CCCEEEEE--------E-CCEEEEEEEHHHHHHHHh
Confidence            7889999999999999999996 67777776        3 589999999999999986

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.47  E-value=2.4e-13  Score=141.55  Aligned_cols=153  Identities=14%  Similarity=0.140  Sum_probs=117.8

Q ss_pred             CCHHHHHHHHHccccccccccCCCC-HHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEE
Q psy4847           3 VHPQGLRSFIRVRDHDVTTEFNDLE-KDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIP   81 (396)
Q Consensus         3 ~~~~Elk~ll~~~~~~~~~e~~~l~-~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriP   81 (396)
                      .+++++...+.... -++--...+. +++..++..++.     ++++|++  +++++++++++. ++++.|.+++++++|
T Consensus        78 vTe~~lAia~a~~G-giGvIh~~~~~~~q~~~V~~V~~-----~~~~m~~--d~v~l~~~~tv~-ea~~~m~~~~~s~~p  148 (511)
T 3usb_A           78 VTEADMAIAMARQG-GLGIIHKNMSIEQQAEQVDKVKR-----SESGVIS--DPFFLTPEHQVY-DAEHLMGKYRISGVP  148 (511)
T ss_dssp             TCSHHHHHHHHHHT-CEEEECSSSCHHHHHHHHHHHHT-----SSSCSSS--SCCCBCTTSBHH-HHHHHHHHHCCSEEE
T ss_pred             hcHHHHHHHHHhcC-CceeecccCCHHHHHHHHHHhhc-----ccccccc--CCEEECCCCCHH-HHHHHHHHcCCcEEE
Confidence            45677766555431 1111112222 344556666643     5577875  478999999999 999999999999999


Q ss_pred             EEeC-CCCcEEEEEEhhhhcccCCccccchhhhhhhhcC-CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCC
Q psy4847          82 VYED-RRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQN-SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDP  159 (396)
Q Consensus        82 V~~~-~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~-~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De  159 (396)
                      |+++ ..++++|+|+.+||+... +...+++++|.   + ++++|++++++.++++.|++. +.+.++|+        |+
T Consensus       149 Vvd~g~~~~lvGiVt~rDl~~~~-~~~~~V~~vM~---~~~~vtv~~~~~l~eal~~m~~~-~i~~lpVV--------De  215 (511)
T 3usb_A          149 VVNNLDERKLVGIITNRDMRFIQ-DYSIKISDVMT---KEQLITAPVGTTLSEAEKILQKY-KIEKLPLV--------DN  215 (511)
T ss_dssp             EESCTTTCBEEEEEEHHHHTTCC-CSSSBHHHHCC---CCCCCCEETTCCHHHHHHHHHHH-TCSEEEEE--------CT
T ss_pred             EEecCCCCEEEEEEEehHhhhhc-cCCCcHHHhcc---cCCCEEECCCCCHHHHHHHHHHc-CCCEEEEE--------eC
Confidence            9986 138999999999998633 23457777764   5 889999999999999999995 88999999        99


Q ss_pred             CCceeeeecHHHHHHHHH
Q psy4847         160 FYETVGLITLEDVIEELI  177 (396)
Q Consensus       160 ~g~~vGIVTleDIiEeli  177 (396)
                      +|+++|+||++||++++.
T Consensus       216 ~g~l~GiIT~~Dil~~~~  233 (511)
T 3usb_A          216 NGVLQGLITIKDIEKVIE  233 (511)
T ss_dssp             TSBEEEEEEHHHHHHHHH
T ss_pred             CCCEeeeccHHHHHHhhh
Confidence            999999999999999986

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.46  E-value=2.3e-13  Score=131.53  Aligned_cols=123  Identities=13%  Similarity=0.271  Sum_probs=104.4

Q ss_pred             ccccccccc---cccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc-----cccchh
Q psy4847          40 LRRKIVGDV---MTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD-----DNTPLK  111 (396)
Q Consensus        40 l~~~tV~dI---Mtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~-----~~~~l~  111 (396)
                      +...+|+++   |++  ++++++.++++. ++++.|.+++++++||++++ |+++|+|+.+||+.....     ...++.
T Consensus       184 ~~~~~v~~~~~~m~~--~~~~v~~~~~~~-~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~v~  259 (323)
T 3t4n_C          184 FLKIPIGDLNIITQD--NMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVG  259 (323)
T ss_dssp             GCCSBGGGTTCSBCT--TCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEETTHHHHHHHTTHHHHTTSBHH
T ss_pred             hhhCcHHHcCCCCCC--CcEEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHHHHHHhhchhhhccCCHH
Confidence            456799999   764  478999999999 99999999999999999765 799999999999753211     134666


Q ss_pred             hhhhhhcC------CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847         112 TLCQFYQN------SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ  178 (396)
Q Consensus       112 ~v~~~~~~------~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~  178 (396)
                      ++|.   +      ++.+|.+++++.++++.|.+. +.+.++|+        |++|+++||||..||++.+++
T Consensus       260 ~~m~---~~~~~~~~~~~v~~~~~l~~~~~~m~~~-~~~~l~Vv--------d~~~~l~Giit~~Dil~~l~~  320 (323)
T 3t4n_C          260 EALM---RRSDDFEGVYTCTKNDKLSTIMDNIRKA-RVHRFFVV--------DDVGRLVGVLTLSDILKYILL  320 (323)
T ss_dssp             HHGG---GSCTTCCCCEEECTTCBHHHHHHHHHHS-CCCEEEEE--------CTTSBEEEEEEHHHHHHHHHH
T ss_pred             HHHh---hccccCCCCEEECCCCCHHHHHHHHHHh-CCCEEEEE--------CCCCcEEEEEEHHHHHHHHHh
Confidence            6664   4      789999999999999999995 78888888        888999999999999999984

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.45  E-value=2.3e-14  Score=148.83  Aligned_cols=153  Identities=12%  Similarity=0.145  Sum_probs=109.1

Q ss_pred             CCHHHHHHHHHccccccccccCCC-CHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEE
Q psy4847           3 VHPQGLRSFIRVRDHDVTTEFNDL-EKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIP   81 (396)
Q Consensus         3 ~~~~Elk~ll~~~~~~~~~e~~~l-~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriP   81 (396)
                      +|++++...+.... -++--...+ .+++..++.++     ++++++|++  +++++++++++. ++++.|.+++++++|
T Consensus        54 VTe~~ma~a~a~~G-GiGvI~~n~s~e~qa~~V~~V-----k~~~~~m~~--d~v~v~~~~tv~-ea~~~m~~~~~s~~P  124 (496)
T 4fxs_A           54 VTEARLAIALAQEG-GIGFIHKNMSIEQQAAQVHQV-----KIFEAGVVT--HPVTVRPEQTIA-DVMELTHYHGFAGFP  124 (496)
T ss_dssp             TCSHHHHHHHHHHT-CEEEECSSSCHHHHHHHHHHH-----HHCCC--CB--CCCCBCSSSBHH-HHHHHHTSSCCCEEE
T ss_pred             hhHHHHHHHHHHcC-CcceecCCCCHHHHHHHHHhc-----ccccccccc--CceEECCCCCHH-HHHHHHHHcCCcEEE
Confidence            56788887776641 111111122 55678888887     567899994  588999999999 999999999999999


Q ss_pred             EEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcC-CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCC
Q psy4847          82 VYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQN-SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF  160 (396)
Q Consensus        82 V~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~-~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~  160 (396)
                      |++++ ++++|+|+.+||++... ...++.++|..  + +++++++++++.++++.|+++ +.+.++|+        |++
T Consensus       125 Vvd~~-~~lvGiVt~rDL~~~~~-~~~~v~diM~p--~~~~vtv~~~~~l~ea~~~m~~~-~i~~lpVV--------De~  191 (496)
T 4fxs_A          125 VVTEN-NELVGIITGRDVRFVTD-LTKSVAAVMTP--KERLATVKEGATGAEVQEKMHKA-RVEKILVV--------NDE  191 (496)
T ss_dssp             EECSS-SBEEEEEEHHHHTTCCC-TTSBGGGTSEE--GGGCCEEECC----CGGGTCC----CCCEEEE--------CTT
T ss_pred             EEccC-CEEEEEEEHHHHhhccc-CCCcHHHHhcC--CCCCEEECCCCCHHHHHHHHHHc-CCCEEEEE--------cCC
Confidence            99875 89999999999985432 34577777631  2 588999999999999999995 88999999        999


Q ss_pred             CceeeeecHHHHHHHHH
Q psy4847         161 YETVGLITLEDVIEELI  177 (396)
Q Consensus       161 g~~vGIVTleDIiEeli  177 (396)
                      |+++|+||++||++...
T Consensus       192 G~l~GiIT~~DIl~~~~  208 (496)
T 4fxs_A          192 FQLKGMITAKDFHKAES  208 (496)
T ss_dssp             SBCCEEECCC-----CC
T ss_pred             CCEEEeehHhHHHHhhc
Confidence            99999999999998753

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.45  E-value=8.4e-14  Score=132.97  Aligned_cols=126  Identities=15%  Similarity=0.141  Sum_probs=105.8

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC----------ccccc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP----------DDNTP  109 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~----------~~~~~  109 (396)
                      ....+|+++|++.  +.+++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+....          ....+
T Consensus       153 ~~~~~v~~~m~~~--~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~  228 (296)
T 3ddj_A          153 DEIFPVKVFMSTK--VQTIYKEVRLD-QAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKV  228 (296)
T ss_dssp             CCCCBHHHHSBCS--CCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCB
T ss_pred             cccccHHHhhcCC--CeEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHHHhhcChhhhcCcC
Confidence            4567999999854  78999999999 99999999999999999765 89999999999975321          01235


Q ss_pred             hhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhcccc
Q psy4847         110 LKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIM  182 (396)
Q Consensus       110 l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~  182 (396)
                      +.++|   .+++.+|.+++++.++++.|.+. +.+.++|+        |++|+++||||..||++++. +++.
T Consensus       229 v~~~m---~~~~~~v~~~~~l~~a~~~m~~~-~~~~l~Vv--------d~~g~~~Giit~~Dil~~l~-~~~~  288 (296)
T 3ddj_A          229 VKDVM---VTNLVTIDELASVNRAAAEMIVK-RIGSLLIL--------NKDNTIRGIITERDLLIALH-HILV  288 (296)
T ss_dssp             HHHHS---BCCCCBCCTTSBHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHHHHHH-HHHH
T ss_pred             HHHHh---CCCCeEECCCCcHHHHHHHHHHc-CCCEEEEE--------CCCCeEEEEEcHHHHHHHHH-HHhc
Confidence            56655   57889999999999999999995 78888888        88899999999999999998 4544

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.44  E-value=5.5e-13  Score=125.30  Aligned_cols=119  Identities=18%  Similarity=0.253  Sum_probs=98.3

Q ss_pred             cccc-ccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc----------------
Q psy4847          44 IVGD-VMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD----------------  106 (396)
Q Consensus        44 tV~d-IMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~----------------  106 (396)
                      +|++ +|++  ++++++.++++. ++++.|.+++++++||++++.++++|+++.+||+......                
T Consensus         4 ~v~~~i~~~--~~~~v~~~~sl~-~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~   80 (280)
T 3kh5_A            4 RVMKIAQNK--KIVTVYPTTTIR-KALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLA   80 (280)
T ss_dssp             BGGGTSCCS--CCCCBCTTSBHH-HHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHH
T ss_pred             hHHHHhcCC--CcEEECCCCcHH-HHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhH
Confidence            3444 5554  589999999999 9999999999999999986458999999999997532110                


Q ss_pred             --ccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         107 --NTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       107 --~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                        ..+++++|   .+++.+|++++++.++++.|.+. +.+.++|+        |+.|+++||||.+|+++.+.
T Consensus        81 ~~~~~v~~im---~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vv--------d~~~~~~Givt~~dl~~~~~  141 (280)
T 3kh5_A           81 AINEPVREIM---EENVITLKENADIDEAIETFLTK-NVGGAPIV--------NDENQLISLITERDVIRALL  141 (280)
T ss_dssp             HTTSBGGGTS---BCSCCCEETTCBHHHHHHHHHHT-TCSEEEEE--------CTTCBEEEEEEHHHHHHHHG
T ss_pred             HhhhhHHHhc---CCCCEEECCCCCHHHHHHHHHhC-CCCEEEEE--------cCCCEEEEEEEHHHHHHHHh
Confidence              12445554   57889999999999999999985 77888888        88899999999999999886

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.43  E-value=2.4e-13  Score=141.87  Aligned_cols=122  Identities=12%  Similarity=0.110  Sum_probs=100.7

Q ss_pred             ccccccccccccCCCEEEEeCC-CChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc----CCccccchhhhh
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYD-AILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV----DPDDNTPLKTLC  114 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d-~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~----~~~~~~~l~~v~  114 (396)
                      |.+.+|+++|++.  +++++.+ +++. ++++.|.+++++++||++++.++++|+|+.+||+..    ......++.++|
T Consensus       381 l~~~~V~diM~~~--~vtv~~~~~tv~-ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im  457 (527)
T 3pc3_A          381 WWSLAIAELELPA--PPVILKSDATVG-EAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKAL  457 (527)
T ss_dssp             TTTSBGGGGCCCC--CSCCEETTCBHH-HHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGE
T ss_pred             ccCCcHHHhCcCC--CeEEcCCCCcHH-HHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHh
Confidence            3468999999954  7889999 9999 999999999999999998334899999999999742    112234666665


Q ss_pred             hhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCC----CCceeeeecHHHHHHHHHh
Q psy4847         115 QFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDP----FYETVGLITLEDVIEELIQ  178 (396)
Q Consensus       115 ~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De----~g~~vGIVTleDIiEeli~  178 (396)
                         .+++++|.+++++.++++.|.+.   ++++|+        |+    +|+++||||..||++.+.+
T Consensus       458 ---~~~~~~v~~~~~l~~a~~~m~~~---~~~pVV--------d~~~~~~g~lvGIVT~~Dll~~l~~  511 (527)
T 3pc3_A          458 ---NKRVIRLNESEILGKLARVLEVD---PSVLIL--------GKNPAGKVELKALATKLDVTTFIAA  511 (527)
T ss_dssp             ---ETTCCEEETTSBHHHHHHHHTTC---SEEEEE--------EECSSSCEEEEEEEEHHHHHHHHHT
T ss_pred             ---cCCCeEECCCCcHHHHHHHHhhC---CEEEEE--------eCCcccCCeEEEEEEHHHHHHHHHh
Confidence               48899999999999999999763   456777        55    5899999999999999973

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.43  E-value=2.4e-14  Score=152.70  Aligned_cols=125  Identities=16%  Similarity=0.051  Sum_probs=102.1

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHH-HcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc----cc-------
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD----NT-------  108 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~-~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~----~~-------  108 (396)
                      .+.+|+|+|+|++++.++++++++. ++.+.|. +++++++||+|++ ++++|+|+.+||+......    ..       
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~-e~~~~~~~~~~~~~~PVvd~~-~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~  528 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQ-HIKGILEKFPNRLVFPVIDAN-GYLLGAISRKEIVDRLQHVLEDVPEPIAGHRT  528 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHH-HHHHHHHHSTTCCEECBBCTT-CBBCCEESHHHHTTTTTTC-------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHH-HHHHHHHhcCCcceEEEEecC-CeEEEEEEHHHHHHHHHHHhhhcccccccccc
Confidence            6789999999988899999999999 9999999 7999999999864 8999999999997532110    00       


Q ss_pred             -------------------------------------chhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEe
Q psy4847         109 -------------------------------------PLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRV  151 (396)
Q Consensus       109 -------------------------------------~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~  151 (396)
                                                           +...+.++|.+++.+|++++++.++++.|.++ +.|.++|+  
T Consensus       529 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~-~i~~lpVv--  605 (632)
T 3org_A          529 LVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVML-MPSMIYVT--  605 (632)
T ss_dssp             ------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHT-CCSEEEEE--
T ss_pred             eeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhc-CCCEEEEE--
Confidence                                                 00014445678899999999999999999995 78888887  


Q ss_pred             CCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         152 NNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       152 ~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                             ++|+++||||++||++++.
T Consensus       606 -------e~G~lvGIVT~~Dll~~~~  624 (632)
T 3org_A          606 -------ERGKLVGIVEREDVAYGYS  624 (632)
T ss_dssp             -------ETTEEEEEEEGGGTEECCC
T ss_pred             -------ECCEEEEEEehhhHHHHHh
Confidence                   3589999999999977653

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.40  E-value=3.8e-13  Score=126.93  Aligned_cols=117  Identities=21%  Similarity=0.205  Sum_probs=83.2

Q ss_pred             cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCce
Q psy4847          43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCY  122 (396)
Q Consensus        43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~  122 (396)
                      ++|+++|++.  +++++.++++. ++++.|.+++++++||++++ ++++|+++.+||+....  ..+++++|   .++++
T Consensus         1 m~v~~im~~~--~~~v~~~~~~~-~a~~~~~~~~~~~~pV~d~~-~~~~Giv~~~dl~~~~~--~~~v~~~m---~~~~~   71 (282)
T 2yzq_A            1 MRVKTIMTQN--PVTITLPATRN-YALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPD--EEQLAMLV---KRDVP   71 (282)
T ss_dssp             CBHHHHSEES--CCCEESSCC-------------CCEEEEECTT-CCEEEEEESSCC------------CCC---BSCCC
T ss_pred             CchHHhccCC--CeEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhhhc--cCCHHHHc---CCCCc
Confidence            3689999954  88999999999 99999999999999999864 89999999999985432  23566665   46788


Q ss_pred             EEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH-HHH
Q psy4847         123 FVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE-ELI  177 (396)
Q Consensus       123 ~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE-eli  177 (396)
                      ++++++++.++++.|.+. +.+.++|+        |+.|+++|+||.+|+++ .+.
T Consensus        72 ~v~~~~~l~~a~~~m~~~-~~~~~~Vv--------d~~~~~~Giit~~di~~~~~~  118 (282)
T 2yzq_A           72 VVKENDTLKKAAKLMLEY-DYRRVVVV--------DSKGKPVGILTVGDIIRRYFA  118 (282)
T ss_dssp             EEETTSBHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHHHHTTT
T ss_pred             EECCCCcHHHHHHHHHHc-CCCEEEEE--------cCCCEEEEEEEHHHHHHHHHh
Confidence            999999999999999985 67778888        77799999999999999 665

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.37  E-value=1.1e-13  Score=143.99  Aligned_cols=154  Identities=10%  Similarity=0.045  Sum_probs=18.8

Q ss_pred             CCHHHHHHHHHccccccccccCCCC-HHHHHHHHHHhcccccccccc-cccCCCEEEEeCCCChhHHHHHHHHHcCCcEE
Q psy4847           3 VHPQGLRSFIRVRDHDVTTEFNDLE-KDEVNIISGALELRRKIVGDV-MTKLEDVYMLSYDAILDFETVSEIMKSGYSRI   80 (396)
Q Consensus         3 ~~~~Elk~ll~~~~~~~~~e~~~l~-~~E~~~i~~alel~~~tV~dI-Mtp~~dv~~l~~d~~l~~e~i~~i~~~g~sri   80 (396)
                      ++++++...+..... ++--...++ +++..++.++..      .++ |++  +++++++++++. ++++.|.+++++++
T Consensus        62 vt~~~la~~la~~gg-~G~I~~~~~~e~~~~~v~~V~~------~e~gM~~--~~~~v~~~~tv~-eal~~m~~~~~s~~  131 (503)
T 1me8_A           62 VSGEKMAIALAREGG-ISFIFGSQSIESQAAMVHAVKN------FKAGFVV--SDSNVKPDQTFA-DVLAISQRTTHNTV  131 (503)
T ss_dssp             TCSHHHHHHHHHTTC-EEEECCSSCHHHHHHHHHHHHT------TTC---------------------------------
T ss_pred             hhHHHHHHHHHhCCC-cceeeCCCCHHHHHHHHhhhhh------cccCccc--CCeEECCCCcHH-HHHHHHHHcCceEE
Confidence            466788777766310 000011233 455666665543      455 987  589999999999 99999999999999


Q ss_pred             EEEeCC--CCcEEEEEEhhhhcccCCccccchhhhhhhhcCC--ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCC
Q psy4847          81 PVYEDR--RTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNS--CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGE  156 (396)
Q Consensus        81 PV~~~~--~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~--v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~  156 (396)
                      ||++++  .++++|+|+.+||+........+++++|.   ++  +++|++++++.++++.|.+. +.+.++|+       
T Consensus       132 pVvd~~~~~g~lvGiVt~~Dl~~~~~~~~~~V~diM~---~~~~~~tv~~~~sl~ea~~~m~~~-~i~~lpVV-------  200 (503)
T 1me8_A          132 AVTDDGTPHGVLLGLVTQRDYPIDLTQTETKVSDMMT---PFSKLVTAHQDTKLSEANKIIWEK-KLNALPII-------  200 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEECCCcCCeEEEEEEHHHHHhhhccccCcHHHHhC---CCCCCEEEcCCCcHHHHHHHHHHc-CCCEEEEE-------
Confidence            999764  37899999999998632222346777764   55  88999999999999999995 88999998       


Q ss_pred             CCCCCceeeeecHHHHHHHHHh
Q psy4847         157 GDPFYETVGLITLEDVIEELIQ  178 (396)
Q Consensus       157 ~De~g~~vGIVTleDIiEeli~  178 (396)
                       |++|+++||||.+||++.+..
T Consensus       201 -De~g~lvGiIT~~Dil~~~~~  221 (503)
T 1me8_A          201 -DDDQHLRYIVFRKDYDRSQVC  221 (503)
T ss_dssp             ----------------------
T ss_pred             -cCCCeEEEEEEecHHHHhhhc
Confidence             889999999999999999873

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.36  E-value=8.5e-13  Score=123.33  Aligned_cols=122  Identities=16%  Similarity=0.115  Sum_probs=93.6

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--CCccc-------c----
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--DPDDN-------T----  108 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~~~~~-------~----  108 (396)
                      ..+|+|+|++.  +.++++++++. ++++.|.+++++++||++++ ++++|+|+.+||+..  ...+.       +    
T Consensus         6 ~~~v~~im~~~--~~~v~~~~~~~-~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~   81 (245)
T 3l2b_A            6 KLKVEDLEMDK--IAPLAPEVSLK-MAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIWDSNILAKSATSLDN   81 (245)
T ss_dssp             CCBGGGSCCBC--CCCBCTTCBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHH
T ss_pred             cCcHHHhcCCC--CcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHH
Confidence            56899999864  78999999999 99999999999999999865 899999999999642  10000       0    


Q ss_pred             --------------------------------------------------------------------------------
Q psy4847         109 --------------------------------------------------------------------------------  108 (396)
Q Consensus       109 --------------------------------------------------------------------------------  108 (396)
                                                                                                      
T Consensus        82 v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~  161 (245)
T 3l2b_A           82 ILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAK  161 (245)
T ss_dssp             HHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHH
T ss_pred             HHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---------------------chhhhhhhhc-CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeee
Q psy4847         109 ---------------------PLKTLCQFYQ-NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGL  166 (396)
Q Consensus       109 ---------------------~l~~v~~~~~-~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGI  166 (396)
                                           .-..+.++|. +++.++.+++++.++++.|.+. +.+.++|+        |+.|+++||
T Consensus       162 ~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~-~~~~~pVv--------d~~~~~~Gi  232 (245)
T 3l2b_A          162 KNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSET-RYSNYPVI--------DENNKVVGS  232 (245)
T ss_dssp             HHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHH-CCSEEEEE--------CTTCBEEEE
T ss_pred             HcCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhc-CCceEEEE--------cCCCeEEEE
Confidence                                 0012344455 7889999999999999999996 67777777        888999999


Q ss_pred             ecHHHHHHHH
Q psy4847         167 ITLEDVIEEL  176 (396)
Q Consensus       167 VTleDIiEel  176 (396)
                      ||..|++...
T Consensus       233 it~~dll~~~  242 (245)
T 3l2b_A          233 IARFHLISTH  242 (245)
T ss_dssp             EECC------
T ss_pred             EEHHHhhchh
Confidence            9999998764

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.34  E-value=1.8e-13  Score=141.60  Aligned_cols=149  Identities=21%  Similarity=0.252  Sum_probs=21.9

Q ss_pred             CCHHHHHHHHHccccccccccCCCC-HHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEE
Q psy4847           3 VHPQGLRSFIRVRDHDVTTEFNDLE-KDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIP   81 (396)
Q Consensus         3 ~~~~Elk~ll~~~~~~~~~e~~~l~-~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriP   81 (396)
                      .++.|+...+.... ..+.-...++ +++..+|.+++.+.     ++|++  ++++++.++++. ++++.|.+++++++|
T Consensus        58 vt~~ela~ava~~G-glG~i~~~~~~e~~~~~I~~v~~~~-----~~m~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~p  128 (486)
T 2cu0_A           58 VTEWEMAVAMAREG-GLGVIHRNMGIEEQVEQVKRVKRAE-----RLIVE--DVITIAPDETVD-FALFLMEKHGIDGLP  128 (486)
T ss_dssp             TCSHHHHHHHHHTT-CEEEECSSSCHHHHHHHHHHHHTCC----------------------------------------
T ss_pred             ecHHHHHHHHHhcC-CceeecCCCCHHHHHHHHHhhcchh-----hcccc--CceEECCCCCHH-HHHHHHHHcCCcEEE
Confidence            46778877776531 1110111133 56788999997764     47884  589999999999 999999999999999


Q ss_pred             EEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCC
Q psy4847          82 VYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFY  161 (396)
Q Consensus        82 V~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g  161 (396)
                      |+++  ++++|+|+.+||+. +  ...++.++|   .+++++|++++++.++++.|++. +.+.++|+        |++|
T Consensus       129 Vvd~--~~lvGivt~~Dl~~-~--~~~~v~~im---~~~~~~v~~~~~l~eal~~m~~~-~~~~lpVV--------de~g  191 (486)
T 2cu0_A          129 VVED--EKVVGIITKKDIAA-R--EGKLVKELM---TKEVITVPESIEVEEALKIMIEN-RIDRLPVV--------DERG  191 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEC--CEEEEEEEHHHhcc-C--CCCCHHHHc---cCCCeEECCcCcHHHHHHHHHHc-CCCEEEEE--------ecCC
Confidence            9976  79999999999986 2  334666665   46888999999999999999995 88899998        8899


Q ss_pred             ceeeeecHHHHHHHHH
Q psy4847         162 ETVGLITLEDVIEELI  177 (396)
Q Consensus       162 ~~vGIVTleDIiEeli  177 (396)
                      +++||||.+||++++.
T Consensus       192 ~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          192 KLVGLITMSDLVARKK  207 (486)
T ss_dssp             ---------------C
T ss_pred             eEEEEEEHHHHHHhhh
Confidence            9999999999999863

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.33  E-value=6.1e-12  Score=122.02  Aligned_cols=122  Identities=14%  Similarity=0.219  Sum_probs=101.2

Q ss_pred             ccccccc---ccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc-----cccchhh
Q psy4847          41 RRKIVGD---VMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD-----DNTPLKT  112 (396)
Q Consensus        41 ~~~tV~d---IMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~-----~~~~l~~  112 (396)
                      ...+|++   +|++  ++.+++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+.....     ...++.+
T Consensus       180 ~~~~v~~l~~~m~~--~~~~v~~~~~~~-~~~~~m~~~~~~~~~Vvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~v~~  255 (334)
T 2qrd_G          180 LRVPLNQMTIGTWS--NLATASMETKVY-DVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDGDYSNLDLSVGE  255 (334)
T ss_dssp             CCCBGGGSSCSBCS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEETHHHHHHHTTSCGGGGGSBHHH
T ss_pred             hhCcHHHhCCcccC--CceEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHHHHhhccccccccCcHHH
Confidence            3578999   4874  478899999999 99999999999999999765 799999999999753111     1245555


Q ss_pred             hhhhhc-----CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         113 LCQFYQ-----NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       113 v~~~~~-----~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      +|.  .     +++++|.+++++.++++.|.+. +.+.++|+        |++|+++||||..||++.+.
T Consensus       256 ~m~--~~~~~~~~~~~v~~~~~l~~~~~~m~~~-~~~~l~Vv--------d~~g~l~Giit~~dil~~~~  314 (334)
T 2qrd_G          256 ALL--KRPANFDGVHTCRATDRLDGIFDAIKHS-RVHRLFVV--------DENLKLEGILSLADILNYII  314 (334)
T ss_dssp             HHT--TCCTTCCCCCEECTTCBHHHHHHHHHHS-CCCEEEEE--------CTTCBEEEEEEHHHHHHHHH
T ss_pred             HHh--cccccCCCCEEECCCCcHHHHHHHHHHc-CCCEEEEE--------CCCCeEEEEEeHHHHHHHHH
Confidence            553  1     3789999999999999999995 78888888        88899999999999999997

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.33  E-value=2.6e-12  Score=121.20  Aligned_cols=121  Identities=15%  Similarity=0.155  Sum_probs=99.7

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc------ccCC------c---
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA------LVDP------D---  105 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl------~~~~------~---  105 (396)
                      .+.+|+++|++.  +.+++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+      ....      .   
T Consensus       124 ~~~~v~~~m~~~--~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~  199 (282)
T 2yzq_A          124 KGVEIEPYYQRY--VSIVWEGTPLK-AALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASSEE  199 (282)
T ss_dssp             GGCBSTTTSBSC--CCCEETTSBHH-HHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC-------------
T ss_pred             ccCcHHHHhCCC--CEEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHhhhhhhhhhhccchhhhhhhh
Confidence            467899999754  78999999999 99999999999999999755 7899999999998      3221      0   


Q ss_pred             -------------------cccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeee
Q psy4847         106 -------------------DNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGL  166 (396)
Q Consensus       106 -------------------~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGI  166 (396)
                                         ...+++++   |.+++.+|.+++++.++++.|.+. +.+.++|+        |+.|+++||
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~i---m~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~~~lvGi  267 (282)
T 2yzq_A          200 EWILESHPTLLFEKFELQLPNKPVAEI---MTRDVIVATPHMTVHEVALKMAKY-SIEQLPVI--------RGEGDLIGL  267 (282)
T ss_dssp             -------------------CCCBGGGT---CBSSCCCBCTTSBHHHHHHHHHHH-TCSEEEEE--------ETTTEEEEE
T ss_pred             hhhcccchHHHHhHhhhhhccCCHHHh---cCCCCceeCCCCCHHHHHHHHHHc-CcceeEEE--------CCCCCEEEE
Confidence                               12344554   458899999999999999999996 77888888        766899999


Q ss_pred             ecHHHHHHHHH
Q psy4847         167 ITLEDVIEELI  177 (396)
Q Consensus       167 VTleDIiEeli  177 (396)
                      ||..||++.+.
T Consensus       268 it~~Dil~~~~  278 (282)
T 2yzq_A          268 IRDFDLLKVLV  278 (282)
T ss_dssp             EEHHHHGGGGC
T ss_pred             EeHHHHHHHHH
Confidence            99999998764

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.32  E-value=2.5e-13  Score=140.84  Aligned_cols=152  Identities=15%  Similarity=0.178  Sum_probs=21.1

Q ss_pred             CCHHHHHHHHHccccccccccCCCC-HHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEE
Q psy4847           3 VHPQGLRSFIRVRDHDVTTEFNDLE-KDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIP   81 (396)
Q Consensus         3 ~~~~Elk~ll~~~~~~~~~e~~~l~-~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriP   81 (396)
                      ++++++...+.+..- ++--...++ +++..++..+     ++++++|++  +++++++++++. ++++.|.+++++++|
T Consensus        53 VTe~~lA~ala~~GG-iGvI~~~~~~e~~a~~v~~v-----k~~~~~m~~--~~v~v~~~~tv~-ea~~~m~~~~~s~~p  123 (490)
T 4avf_A           53 VTEARLAIAMAQEGG-IGIIHKNMGIEQQAAEVRKV-----KKHETAIVR--DPVTVTPSTKII-ELLQMAREYGFSGFP  123 (490)
T ss_dssp             TCSHHHHHHHHHHTS-EEEECCSSCHHHHHHHHHHH-----HHCCC----------------------------------
T ss_pred             hCHHHHHHHHHHcCC-CccccCCCCHHHHHHHhhhh-----cccccCccc--CceEeCCCCcHH-HHHHHHHHhCCCEEE
Confidence            567888877766410 111112334 4446666665     567899985  488999999999 999999999999999


Q ss_pred             EEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcC-CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCC
Q psy4847          82 VYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQN-SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF  160 (396)
Q Consensus        82 V~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~-~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~  160 (396)
                      |++ + ++++|+|+.+||.+... ...++.++|..  + ++++|++++++.++++.|.+. +.+.++|+        |++
T Consensus       124 Vvd-~-g~lvGIVt~rDl~~~~~-~~~~V~~vMtp--~~~~vtv~~~~~l~ea~~~m~~~-~i~~lpVV--------De~  189 (490)
T 4avf_A          124 VVE-Q-GELVGIVTGRDLRVKPN-AGDTVAAIMTP--KDKLVTAREGTPLEEMKAKLYEN-RIEKMLVV--------DEN  189 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEE-C-CEEEEEEEhHHhhhccc-cCCcHHHHhcc--CCCCEEECCCCcHHHHHHHHHHc-CCCEEEEE--------cCC
Confidence            998 3 89999999999975432 23567777631  3 689999999999999999995 88999999        899


Q ss_pred             CceeeeecHHHHHHHHH
Q psy4847         161 YETVGLITLEDVIEELI  177 (396)
Q Consensus       161 g~~vGIVTleDIiEeli  177 (396)
                      |+++|+||++||++.+.
T Consensus       190 g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          190 FYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             -----------------
T ss_pred             CcEEEEEehHHhhhhcc
Confidence            99999999999999864

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.30  E-value=1.4e-11  Score=119.34  Aligned_cols=124  Identities=16%  Similarity=0.300  Sum_probs=100.8

Q ss_pred             ccccccc--cccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc-----cccchhhhh
Q psy4847          42 RKIVGDV--MTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD-----DNTPLKTLC  114 (396)
Q Consensus        42 ~~tV~dI--Mtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~-----~~~~l~~v~  114 (396)
                      ..+++++  |+ ..++++++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+.....     ...++.+++
T Consensus       189 ~~~v~~~~v~~-~~~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~  265 (330)
T 2v8q_E          189 SKSLEELQIGT-YANIAMVRTTTPVY-VALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTKAL  265 (330)
T ss_dssp             GSBHHHHTCSB-CSSCCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-SBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHG
T ss_pred             cCCHHHhcccC-cCCceEECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEHHHHHHHHhccccccccCcHHHHH
Confidence            3556666  54 14578999999999 99999999999999999765 789999999999864321     134566665


Q ss_pred             hh---hcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         115 QF---YQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       115 ~~---~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      ..   +.+++.+|.+++++.++++.|.+. +.+.++|+        |++|+++||||..||++.+.
T Consensus       266 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~-~~~~l~Vv--------d~~g~l~Giit~~Dil~~~~  322 (330)
T 2v8q_E          266 QHRSHYFEGVLKCYLHETLEAIINRLVEA-EVHRLVVV--------DEHDVVKGIVSLSDILQALV  322 (330)
T ss_dssp             GGCCSCCCSCCEECTTSBHHHHHHHHHHH-TCSEEEEE--------CTTSBEEEEEEHHHHHHHHH
T ss_pred             hccccccCCCeEECCCCcHHHHHHHHHHC-CCcEEEEE--------cCCCcEEEEEeHHHHHHHHH
Confidence            31   137889999999999999999995 77878888        88899999999999999987

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.30  E-value=2.9e-12  Score=121.78  Aligned_cols=125  Identities=14%  Similarity=0.156  Sum_probs=98.1

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC-CCcEEEEEEhhhhcccC-------Cc---c--
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR-RTNIVTMFYIKDLALVD-------PD---D--  106 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~-~~~IVGiL~vkDLl~~~-------~~---~--  106 (396)
                      ....+|+|||++  +++++..++++. ++.+.|.+++++++||++++ .+.++|+|+.+||+.+.       ..   .  
T Consensus        10 ~~~~~v~diMt~--~vvtv~~~~tv~-~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~   86 (250)
T 2d4z_A           10 KYNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAA   86 (250)
T ss_dssp             CSSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCC
T ss_pred             cCCCChHHhcCC--CCeEECCCCCHH-HHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhh
Confidence            467899999996  489999999999 99999999999999999864 36799999999996310       00   0  


Q ss_pred             ----------------------------------------------c---------------------------------
Q psy4847         107 ----------------------------------------------N---------------------------------  107 (396)
Q Consensus       107 ----------------------------------------------~---------------------------------  107 (396)
                                                                    .                                 
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (250)
T 2d4z_A           87 EADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASR  166 (250)
T ss_dssp             CBCCC---------------------------------------------------------------------------
T ss_pred             cccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcc
Confidence                                                          0                                 


Q ss_pred             ----cc-----------hh-hh--h-hhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeec
Q psy4847         108 ----TP-----------LK-TL--C-QFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLIT  168 (396)
Q Consensus       108 ----~~-----------l~-~v--~-~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVT  168 (396)
                          ..           +. .|  . .+|...+.+|.++++|..+...|..- +.+-++|+        + .|+++||||
T Consensus       167 ~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~l-glr~l~V~--------~-~GrLVGIVT  236 (250)
T 2d4z_A          167 FEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLL-GLDRAYVT--------S-MGKLVGVVA  236 (250)
T ss_dssp             CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHH-TCSEEEEE--------E-TTEEEEEEE
T ss_pred             cccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHh-CCeEEEEE--------E-CCEEEEEEE
Confidence                00           00 00  0 13456778899999999999999995 67777777        4 599999999


Q ss_pred             HHHHHHHHH
Q psy4847         169 LEDVIEELI  177 (396)
Q Consensus       169 leDIiEeli  177 (396)
                      +.|++.+|.
T Consensus       237 rkDl~kai~  245 (250)
T 2d4z_A          237 LAEIQAAIE  245 (250)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999986

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.09  E-value=9e-12  Score=128.93  Aligned_cols=132  Identities=17%  Similarity=0.210  Sum_probs=13.4

Q ss_pred             CCCCHHH-HHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          24 NDLEKDE-VNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        24 ~~l~~~E-~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      ..++.++ ...+..+     ++++++|++  +++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+||+..
T Consensus        80 ~~~~~e~~~~~v~~v-----~~~~~iM~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~lvGivt~~Dl~~~  150 (494)
T 1vrd_A           80 KNLTPDEQARQVSIV-----KKTENGIIY--DPITVTPDMTVK-EAIDLMAEYKIGGLPVVDEE-GRLVGLLTNRDVRFE  150 (494)
T ss_dssp             SSSCHHHHHHHHHHH-----HTC---------------------------------------------------------
T ss_pred             cCCChHHHHHHHHhh-----hhHhhcCcc--CCeEECCCCCHH-HHHHHHHHcCceEEEEEcCC-CEEEEEEEHHHHHhh
Confidence            3455544 3445554     346889986  488999999999 99999999999999999865 789999999999864


Q ss_pred             CCccccchhhhhhhhcC--CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         103 DPDDNTPLKTLCQFYQN--SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       103 ~~~~~~~l~~v~~~~~~--~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      .. ...++.++|   .+  ++++|.+++++.++++.|.+. +.+.++|+        |+.|+++|+||..||++.+.
T Consensus       151 ~~-~~~~v~~im---~~~~~~~~v~~~~~l~ea~~~m~~~-~~~~lpVV--------d~~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          151 KN-LSKKIKDLM---TPREKLIVAPPDISLEKAKEILHQH-RIEKLPLV--------SKDNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             -----------------------------------------------------------------------CHHHHT
T ss_pred             cC-CCCcHHHHh---CCCCCCeEECCCCCHHHHHHHHHHc-CCcEEEEE--------cCCCeEEEEEEHHHHHhhhc
Confidence            22 234666665   45  889999999999999999995 77778888        88899999999999999986

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.88  E-value=4e-11  Score=124.73  Aligned_cols=120  Identities=18%  Similarity=0.187  Sum_probs=68.1

Q ss_pred             cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC--CCcEEEEEEhhhhcccCC-ccccchhhhhhhhcC
Q psy4847          43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR--RTNIVTMFYIKDLALVDP-DDNTPLKTLCQFYQN  119 (396)
Q Consensus        43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~--~~~IVGiL~vkDLl~~~~-~~~~~l~~v~~~~~~  119 (396)
                      +++.++|++.  ++++++++++. ++++.|.+++++.+||++++  .++++|+|+.+||....+ ....++.++|   .+
T Consensus       108 ~~~~~im~~~--~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~~~~~~v~~vm---~~  181 (514)
T 1jcn_A          108 KNFEQGFITD--PVVLSPSHTVG-DVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVM---TP  181 (514)
T ss_dssp             HTCCTTSCSS--CCCCCC------------------CEESCC--------CCEECTTTTC-------------------C
T ss_pred             hhhhhccccC--CEEECCCCCHH-HHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhccCCCCHHHHh---CC
Confidence            4788999854  77899999999 99999999999999999763  379999999999986532 2234666665   46


Q ss_pred             --CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         120 --SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       120 --~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                        ++++|.+++++.++++.|.+. +.+.++|+        |+.|+++|+||..||++.+.
T Consensus       182 ~~~~~tv~~~~~l~ea~~~m~~~-~~~~lpVV--------d~~g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          182 RIELVVAPAGVTLKEANEILQRS-KKGKLPIV--------NDCDELVAIIARTDLKKNRD  232 (514)
T ss_dssp             CBCCCCEETTCCSTTTTTHHHHH-TCSCCCEE--------SSSSCCC----CCCCSSCCC
T ss_pred             CCCCeEECCCCCHHHHHHHHHHc-CCCcccEE--------CCCCeEEEEEEHHHHHHHhh
Confidence              789999999999999999996 66666777        88899999999999987654

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.83  E-value=6.4e-10  Score=114.94  Aligned_cols=126  Identities=17%  Similarity=0.243  Sum_probs=7.4

Q ss_pred             HHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC--CCcEEEEEEhhhhcccCCcc
Q psy4847          29 DEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR--RTNIVTMFYIKDLALVDPDD  106 (396)
Q Consensus        29 ~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~--~~~IVGiL~vkDLl~~~~~~  106 (396)
                      ++.+++..+-.+.     ..|.  .+.++|.++.++. ++.+.+.+++++.+||+++.  .++++|||+-+|+.+.++  
T Consensus       129 ~Qa~~V~~VKr~e-----~g~i--~dPvtl~P~~Tv~-da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~d~--  198 (556)
T 4af0_A          129 EQAAMVRRVKKYE-----NGFI--TDPLCLGPDATVG-DVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQDA--  198 (556)
T ss_dssp             HHHHHHHHHHHCC-----C-------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcc-----cCcc--CCCeEcCCCCCHH-HHHHHHHHhCCCccccccccCcCCEEEEEEeccccccccc--
Confidence            3456666664443     4454  3467999999999 99999999999999999752  478999999999987544  


Q ss_pred             ccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHH
Q psy4847         107 NTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL  176 (396)
Q Consensus       107 ~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEel  176 (396)
                      ..+++++|.   .+++++++++++.++.+.|.++ +..-++|+        |+.|+++|+||..||...-
T Consensus       199 ~~~V~evMT---~~lvt~~~~~~leeA~~iL~~~-kieklpVV--------d~~g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          199 ETPIKSVMT---TEVVTGSSPITLEKANSLLRET-KKGKLPIV--------DSNGHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             ceEhhhhcc---cceEEecCCCCHHHHHHHHHHc-cccceeEE--------ccCCcEEEEEEechhhhhh
Confidence            457888875   6899999999999999999995 77888888        8899999999999998764

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=98.61  E-value=1.3e-07  Score=79.17  Aligned_cols=97  Identities=24%  Similarity=0.235  Sum_probs=76.8

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcc---eeecCCccchhhhhcccccccCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENL---VYEAGPFSYFGCQALTQNIGIAE  312 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~---~~E~gpfs~~G~~aL~~~~~~~~  312 (396)
                      ++..+..|..........++..||+.|++++++++|++|+|++..    |++..   ....+|..+||+.++...     
T Consensus        18 ~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG~~~~~~~-----   92 (142)
T 3mdp_A           18 TDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGVSSLIKP-----   92 (142)
T ss_dssp             CHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEECGGGSSTT-----
T ss_pred             CHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEechHHHcCC-----
Confidence            456678888887777778888999999999999999999999976    77777   888999999999888741     


Q ss_pred             CCCCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847         313 SPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA  369 (396)
Q Consensus       313 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a  369 (396)
                      .      |                      -.++++|.++|+++.|++..+...+..
T Consensus        93 ~------~----------------------~~~~~~a~~~~~~~~i~~~~~~~l~~~  121 (142)
T 3mdp_A           93 Y------H----------------------YTSSARATKPVRVVDINGARLREMSEN  121 (142)
T ss_dssp             C------B----------------------CSSEEEESSCEEEEEEEHHHHHHHHHH
T ss_pred             C------C----------------------ceEEEEECCcEEEEEEeHHHHHHHHHH
Confidence            0      0                      123999999999999999999887653

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2

Probab=98.56  E-value=3.6e-07  Score=76.32  Aligned_cols=102  Identities=19%  Similarity=0.172  Sum_probs=79.7

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE---cCCccee--ecCCccchhhhhc---ccccccC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV---GKENLVY--EAGPFSYFGCQAL---TQNIGIA  311 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~---G~e~~~~--E~gpfs~~G~~aL---~~~~~~~  311 (396)
                      ++..+..|.........++...||+.|++++++++|++|+|++..   |++....  ..+|.++||+.+|   ...  . 
T Consensus        18 ~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~--~-   94 (137)
T 1wgp_A           18 DERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDP--K-   94 (137)
T ss_dssp             CHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTHHHHHHHCS--S-
T ss_pred             CHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHHHHHHHhcc--c-
Confidence            456678888888888888899999999999999999999999875   5555555  8999999999985   321  0 


Q ss_pred             CCCCCCCCcccccCCCcccccccccCCccc-ccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847         312 ESPTNNSSAAQAYGGSLQSVNLDSILRYTF-VPDYSVRATTEMFYVKIRRSFYLAAKRA  369 (396)
Q Consensus       312 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~PD~sv~~~~d~~~~~Itr~~Y~~al~a  369 (396)
                        +                       +..| ...++++|.++|+++.|++..+...+..
T Consensus        95 --~-----------------------~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~  128 (137)
T 1wgp_A           95 --S-----------------------GSNLPSSTRTVKALTEVEAFALIADELKFVASQ  128 (137)
T ss_dssp             --C-----------------------CSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHH
T ss_pred             --c-----------------------ccccccceeEEEEeEEEEEEEECHHHHHHHHHH
Confidence              0                       0011 1245999999999999999999876653

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*

Probab=98.54  E-value=2.7e-07  Score=79.64  Aligned_cols=99  Identities=16%  Similarity=0.091  Sum_probs=82.2

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE---cCCcceeecCCccchhhhhcccccccCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV---GKENLVYEAGPFSYFGCQALTQNIGIAESPTN  316 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~---G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~  316 (396)
                      ++..+..|+.........++..||+.|++++++++|++|+|++..   |++......+|..+||+.++....     +  
T Consensus        50 ~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G~~fGe~~~~~~~-----~--  122 (161)
T 3idb_B           50 DPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNT-----P--  122 (161)
T ss_dssp             CHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESCCEECGGGGTCCC-----C--
T ss_pred             CHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCCCEechHHHHcCC-----C--
Confidence            456788888887777778888999999999999999999999987   456677789999999999887510     0  


Q ss_pred             CCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHhh
Q psy4847         317 NSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATL  371 (396)
Q Consensus       317 ~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as~  371 (396)
                                                -.++++|.++|.++.|++..|...+...-
T Consensus       123 --------------------------~~~~v~A~~~~~~~~i~~~~~~~l~~~~p  151 (161)
T 3idb_B          123 --------------------------RAATITATSPGALWGLDRVTFRRIIVKNN  151 (161)
T ss_dssp             --------------------------CSSEEEESSSEEEEEEEHHHHHHHHHHHH
T ss_pred             --------------------------cccEEEECCCeEEEEEeHHHHHHHHHHCH
Confidence                                      02389999999999999999998876543

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=98.53  E-value=1.6e-07  Score=79.03  Aligned_cols=96  Identities=16%  Similarity=0.134  Sum_probs=80.8

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT  315 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~  315 (396)
                      ++..+..|.........+++..||+.|++++++++|++|+|++..    |++......+|..+||+.++....       
T Consensus        17 ~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~-------   89 (149)
T 2pqq_A           17 DDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGELSLFDPG-------   89 (149)
T ss_dssp             CHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGGGGTSCE-------
T ss_pred             CHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechHHhcCCC-------
Confidence            556788888887777788888999999999999999999999986    778888999999999998876510       


Q ss_pred             CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                          |                      ..++++|.++|+++.|++..+...+.
T Consensus        90 ----~----------------------~~~~~~a~~~~~~~~i~~~~~~~l~~  116 (149)
T 2pqq_A           90 ----P----------------------RTATGTALTEVKLLALGHGDLQPWLN  116 (149)
T ss_dssp             ----E----------------------CSSEEEESSCEEEEEEEGGGHHHHHH
T ss_pred             ----C----------------------cceEEEEccceEEEEEeHHHHHHHHH
Confidence                0                      12499999999999999998876653

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}

Probab=98.48  E-value=7.9e-07  Score=75.30  Aligned_cols=96  Identities=10%  Similarity=0.112  Sum_probs=77.5

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT  315 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~  315 (396)
                      ++..+..|..........++..||+.|++++++++|++|+|++..    |++-.....+|..+||+.++....       
T Consensus        24 ~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~-------   96 (154)
T 2z69_A           24 SPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDT-------   96 (154)
T ss_dssp             CHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGGGGGSSC-------
T ss_pred             CHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccHhhccCC-------
Confidence            567788888887777788888999999999999999999999985    788888999999999999887510       


Q ss_pred             CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847         316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK  367 (396)
Q Consensus       316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al  367 (396)
                          +                     ...++++|.++|+++.|++..+...+
T Consensus        97 ----~---------------------~~~~~~~a~~~~~~~~i~~~~~~~l~  123 (154)
T 2z69_A           97 ----P---------------------NYVATAQAVVPSQLFRFSNKAYLRQL  123 (154)
T ss_dssp             ----S---------------------BCSSEEEESSSEEEEEEEHHHHHHHH
T ss_pred             ----C---------------------CCceEEEEccceEEEEECHHHHHHHH
Confidence                0                     01349999999999999999887654

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}

Probab=98.47  E-value=5.7e-07  Score=76.84  Aligned_cols=98  Identities=16%  Similarity=0.087  Sum_probs=81.0

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS  319 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~  319 (396)
                      ++..+..|..+.......++..||+.|++++++++|++|+|++.. ++......+|..+||+.++.....          
T Consensus        39 ~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~~~~~~~~~G~~fG~~~~~~~~~----------  107 (160)
T 4f8a_A           39 SDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ-DDEVVAILGKGDVFGDVFWKEATL----------  107 (160)
T ss_dssp             CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-TTEEEEEEETTCEEECCTTTCSSC----------
T ss_pred             CHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-CCEEEEEecCCCEeCcHHHhcCcc----------
Confidence            567788888887777778888999999999999999999999987 567788899999999998875100          


Q ss_pred             cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847         320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA  369 (396)
Q Consensus       320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a  369 (396)
                                           --..++++|.++|+++.|++..+...+..
T Consensus       108 ---------------------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~  136 (160)
T 4f8a_A          108 ---------------------AQSCANVRALTYCDLHVIKRDALQKVLEF  136 (160)
T ss_dssp             ---------------------CBCSSEEEESSCEEEEEEEHHHHHHHHHH
T ss_pred             ---------------------cceEEEEEECCceEEEEEcHHHHHHHHHH
Confidence                                 00124999999999999999999887653

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*

Probab=98.44  E-value=5.4e-07  Score=77.23  Aligned_cols=99  Identities=19%  Similarity=0.139  Sum_probs=81.7

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS  319 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~  319 (396)
                      ++..+..|+.........+...||+.|++++++++|++|.|++..+. ......+|..+||+.++....     +     
T Consensus        50 ~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~-~~~~~~~~G~~fGe~~~~~~~-----~-----  118 (154)
T 3pna_A           50 DDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNN-EWATSVGEGGSFGELALIYGT-----P-----  118 (154)
T ss_dssp             CHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEETT-EEEEEECTTCEECCHHHHHCC-----C-----
T ss_pred             CHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEECC-EEEEEecCCCEeeehHhhcCC-----C-----
Confidence            56678888888777777888899999999999999999999999844 456679999999999887510     0     


Q ss_pred             cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHhhh
Q psy4847         320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLM  372 (396)
Q Consensus       320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as~~  372 (396)
                                           +  .++++|+++|.++.|++..|...+...-+
T Consensus       119 ---------------------~--~~~v~A~~~~~~~~i~~~~~~~ll~~~~~  148 (154)
T 3pna_A          119 ---------------------R--AATVKAKTNVKLWGIDRDSYRRILMGSTL  148 (154)
T ss_dssp             ---------------------C--SSEEEESSCEEEEEEEHHHHHHHTHHHHH
T ss_pred             ---------------------c--ceEEEECcceEEEEEeHHHHHHHHHhChH
Confidence                                 0  24999999999999999999988766544

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*

Probab=98.41  E-value=6.3e-07  Score=75.25  Aligned_cols=95  Identities=16%  Similarity=0.114  Sum_probs=78.5

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS  319 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~  319 (396)
                      ++..+..|..........+...||+.|++++++++|++|+|++.... ......+|..+||+.++...     .+     
T Consensus        35 ~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~g-~~~~~~~~G~~fGe~~~l~~-----~~-----  103 (139)
T 3ocp_A           35 ELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEG-VKLCTMGPGKVFGELAILYN-----CT-----  103 (139)
T ss_dssp             CHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEETT-EEEEEECTTCEESCHHHHHC-----CC-----
T ss_pred             CHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEECC-EEEEEeCCCCEeccHHHHCC-----CC-----
Confidence            55678888888777777888899999999999999999999997633 46778999999999987751     00     


Q ss_pred             cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                                             -.++++|.++|+++.|++..|...+.
T Consensus       104 -----------------------~~~~~~a~~~~~v~~i~~~~~~~l~~  129 (139)
T 3ocp_A          104 -----------------------RTATVKTLVNVKLWAIDRQCFQTIMM  129 (139)
T ss_dssp             -----------------------CSSEEEESSCEEEEEEEHHHHHHHHT
T ss_pred             -----------------------cceEEEECcceEEEEEcHHHHHHHHh
Confidence                                   02389999999999999999988764

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2

Probab=98.37  E-value=1.1e-06  Score=78.37  Aligned_cols=98  Identities=15%  Similarity=0.193  Sum_probs=79.0

Q ss_pred             HHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCC
Q psy4847         241 GSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTN  316 (396)
Q Consensus       241 e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~  316 (396)
                      +..+..|+.+.......+...||+.|++++++++|++|.|++..    |++-...-.+|..+||+.++......      
T Consensus         3 ~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~------   76 (207)
T 2oz6_A            3 LKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGS------   76 (207)
T ss_dssp             HHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC----------
T ss_pred             HHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCC------
Confidence            45678888887777788889999999999999999999999986    67778889999999999887751000      


Q ss_pred             CCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847         317 NSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK  367 (396)
Q Consensus       317 ~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al  367 (396)
                                             .+-..++++|+++|.++.|++..+...+
T Consensus        77 -----------------------~~~~~~~~~A~~~~~v~~i~~~~~~~l~  104 (207)
T 2oz6_A           77 -----------------------EQERSAWVRAKVECEVAEISYAKFRELS  104 (207)
T ss_dssp             ------------------------CBCCSEEEESSCEEEEEEEHHHHHHHH
T ss_pred             -----------------------CCCcceEEEECCcEEEEEECHHHHHHHH
Confidence                                   0011249999999999999999887654

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}

Probab=98.37  E-value=6.7e-07  Score=79.74  Aligned_cols=96  Identities=17%  Similarity=0.199  Sum_probs=80.8

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT  315 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~  315 (396)
                      ++..+..|..........++..||+.|++++++++|++|+|++..    |++......+|..+||+.++....     + 
T Consensus        51 ~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~~l~~~-----~-  124 (187)
T 3gyd_A           51 SNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMIDGM-----P-  124 (187)
T ss_dssp             CHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEETTCEESHHHHHHCC-----C-
T ss_pred             CHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccCCCeeeeHHHhCCC-----C-
Confidence            567788888887777778888999999999999999999999987    556788899999999999987510     0 


Q ss_pred             CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                                                 -.++|+|.++|+++.|++..+...+.
T Consensus       125 ---------------------------~~~~v~A~~~~~v~~i~~~~~~~l~~  150 (187)
T 3gyd_A          125 ---------------------------RSASCVASLPTDFAVLSRDALYQLLA  150 (187)
T ss_dssp             ---------------------------CSSEEEEEEEEEEEEEEHHHHHHHHH
T ss_pred             ---------------------------eeEEEEECCCeEEEEEcHHHHHHHHH
Confidence                                       02499999999999999999987654

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}

Probab=98.36  E-value=1e-06  Score=78.82  Aligned_cols=96  Identities=13%  Similarity=0.089  Sum_probs=79.0

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS  319 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~  319 (396)
                      ++..+..|..........++..||+.|++++.+++|++|+|+|...........||.++||+.++...  .   +     
T Consensus        83 ~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~fGe~~~~~~--~---~-----  152 (198)
T 2ptm_A           83 DSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEICLLTR--E---R-----  152 (198)
T ss_dssp             CHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSCEEEEECTTCEESCHHHHHS--S---C-----
T ss_pred             CHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCeEEEEecCCCEechHHHcCC--C---c-----
Confidence            56777888877666667788889999999999999999999999744447788999999999988751  0   0     


Q ss_pred             cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                                             ..++|+|.++|+.+.|+|..+...+.
T Consensus       153 -----------------------~~~~~~a~~~~~l~~i~~~~f~~ll~  178 (198)
T 2ptm_A          153 -----------------------RVASVKCETYCTLFSLSVQHFNQVLD  178 (198)
T ss_dssp             -----------------------CSSEEEESSCEEEEEEEHHHHHHHHH
T ss_pred             -----------------------cceEEEEeeEEEEEEEeHHHHHHHHH
Confidence                                   12499999999999999999988765

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=98.36  E-value=8.1e-07  Score=81.17  Aligned_cols=96  Identities=15%  Similarity=0.155  Sum_probs=80.2

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS  319 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~  319 (396)
                      ++..+.+|..........++..||+.|+++++|++|++|.|+|....++.....+|..+||+.+|...  .++       
T Consensus       137 ~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~~~~~l~~g~~fGe~~~~~~--~~~-------  207 (246)
T 3of1_A          137 TTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLND--LPR-------  207 (246)
T ss_dssp             CHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTEEEEEEETTCEECHHHHHHT--CBC-------
T ss_pred             CHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCceEEEcCCCCcccHHHHhCC--CCc-------
Confidence            34557777777666667788899999999999999999999999988778889999999999998761  100       


Q ss_pred             cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                                              .++|+|.++|+.+.|+|..|.+.+.
T Consensus       208 ------------------------~~~v~a~~~~~~~~i~~~~f~~ll~  232 (246)
T 3of1_A          208 ------------------------QATVTATKRTKVATLGKSGFQRLLG  232 (246)
T ss_dssp             ------------------------SSEEEESSCEEEEEEEHHHHHHHCT
T ss_pred             ------------------------ccEEEECCCEEEEEEeHHHHHHHhc
Confidence                                    2399999999999999999988764

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A

Probab=98.33  E-value=1.1e-06  Score=73.28  Aligned_cols=93  Identities=20%  Similarity=0.272  Sum_probs=76.4

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS  319 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~  319 (396)
                      ++..+..|+.........++..||+.|++++++++|++|+|++....   ....+|..+||+.++....     +     
T Consensus        23 ~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~~~~~~G~~~G~~~~~~~~-----~-----   89 (138)
T 1vp6_A           23 GPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---PVELGPGAFFGEMALISGE-----P-----   89 (138)
T ss_dssp             CHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---CEEECTTCEECHHHHHHCC-----C-----
T ss_pred             CHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---cceECCCCEeeehHhccCC-----C-----
Confidence            56678888888777777888899999999999999999999998754   3568999999999877510     0     


Q ss_pred             cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                                             -.++++|.++|+++.|++..+...+.
T Consensus        90 -----------------------~~~~~~a~~~~~~~~i~~~~~~~l~~  115 (138)
T 1vp6_A           90 -----------------------RSATVSAATTVSLLSLHSADFQMLCS  115 (138)
T ss_dssp             -----------------------CSSCEEESSSEEEEEEEHHHHHHHHH
T ss_pred             -----------------------ceeEEEECCCEEEEEECHHHHHHHHH
Confidence                                   02589999999999999999887654

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}

Probab=98.32  E-value=1.8e-06  Score=78.26  Aligned_cols=97  Identities=12%  Similarity=0.179  Sum_probs=81.3

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT  315 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~  315 (396)
                      ++..+..|+.+......+++..||+.|++++++++|++|.|++..    |++-...-.||..+||+.++....       
T Consensus        23 ~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~-------   95 (230)
T 3iwz_A           23 DAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGLFIES-------   95 (230)
T ss_dssp             CHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCGGGTSCC-------
T ss_pred             CHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEehhhhcCC-------
Confidence            456688888887777778888999999999999999999999986    778788899999999999887510       


Q ss_pred             CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                         .|                      ..++++|.++|.++.|++..+...+.
T Consensus        96 ---~~----------------------~~~~~~a~~~~~v~~i~~~~~~~l~~  123 (230)
T 3iwz_A           96 ---DT----------------------REVILRTRTQCELAEISYERLQQLFQ  123 (230)
T ss_dssp             ---SB----------------------CCSEEEESSCEEEEEEEHHHHHHHHH
T ss_pred             ---CC----------------------ceeEEEEcCcEEEEEEeHHHHHHHHH
Confidence               00                      12489999999999999999887665

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...

Probab=98.32  E-value=1.6e-06  Score=77.55  Aligned_cols=97  Identities=16%  Similarity=0.171  Sum_probs=80.1

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT  315 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~  315 (396)
                      ++..+..|..+.......+...||+.|++++++++|++|.|++..    |++-...-.||..+||+.++....       
T Consensus         8 ~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~-------   80 (210)
T 3ryp_A            8 TDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG-------   80 (210)
T ss_dssp             CCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTT-------
T ss_pred             CHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCC-------
Confidence            456688888888777788888999999999999999999999986    667788889999999999877510       


Q ss_pred             CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                                               --..++++|.++|.++.|++..+...+.
T Consensus        81 -------------------------~~~~~~~~a~~~~~v~~i~~~~~~~l~~  108 (210)
T 3ryp_A           81 -------------------------QERSAWVRAKTACEVAEISYKKFRQLIQ  108 (210)
T ss_dssp             -------------------------CBCSSEEEESSCEEEEEEEHHHHHHHHH
T ss_pred             -------------------------CCceEEEEECCcEEEEEEcHHHHHHHHH
Confidence                                     0012489999999999999999877653

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}

Probab=98.31  E-value=1.7e-06  Score=77.69  Aligned_cols=96  Identities=20%  Similarity=0.160  Sum_probs=80.3

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT  315 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~  315 (396)
                      ++..+..|..+......+++..||+.|++++++++|++|.|++..    |++-.....||..+||+.++....       
T Consensus        11 ~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~-------   83 (216)
T 4ev0_A           11 APEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEG-------   83 (216)
T ss_dssp             CHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHHHCC-------
T ss_pred             CHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhcCCC-------
Confidence            456678888887777778888999999999999999999999986    677788999999999998877510       


Q ss_pred             CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                          |                      ..++++|.++|+++.|++..+...+.
T Consensus        84 ----~----------------------~~~~~~a~~~~~v~~i~~~~~~~l~~  110 (216)
T 4ev0_A           84 ----E----------------------RSASAVAVEDTELLALFREDYLALIR  110 (216)
T ss_dssp             ----B----------------------CSSEEEESSSEEEEEEEHHHHHHHHH
T ss_pred             ----C----------------------cceEEEEcCCEEEEEEcHHHHHHHHH
Confidence                0                      12499999999999999999887654

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}

Probab=98.29  E-value=1.8e-06  Score=80.83  Aligned_cols=97  Identities=16%  Similarity=0.171  Sum_probs=80.7

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT  315 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~  315 (396)
                      ++..+..|+.........+...||+.|++++++++|++|.|++..    |++-.....||..+||+.++....       
T Consensus        58 ~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~-------  130 (260)
T 3kcc_A           58 TDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG-------  130 (260)
T ss_dssp             -CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTT-------
T ss_pred             CHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCC-------
Confidence            556788888888888888889999999999999999999999986    677788899999999999877510       


Q ss_pred             CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                                               --..++++|+++|.++.|++..+...+.
T Consensus       131 -------------------------~~~~~~~~A~~~~~l~~i~~~~~~~l~~  158 (260)
T 3kcc_A          131 -------------------------QERSAWVRAKTACEVAEISYKKFRQLIQ  158 (260)
T ss_dssp             -------------------------CBCCSEEEESSCEEEEEEEHHHHHHHHH
T ss_pred             -------------------------CCCceEEEECCCeEEEEEcHHHHHHHHH
Confidence                                     0012489999999999999999877654

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*

Probab=98.27  E-value=2.2e-06  Score=76.94  Aligned_cols=95  Identities=17%  Similarity=0.057  Sum_probs=76.4

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS  319 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~  319 (396)
                      ++..+..|..........++..||+.|++++.+++|++|.|+|.. .++-....||.++||+.++...  .         
T Consensus        84 ~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~~~l~~G~~fGe~~~~~~--~---------  151 (202)
T 3bpz_A           84 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKEMKLSDGSYFGEICLLTR--G---------  151 (202)
T ss_dssp             CHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCCEEEETTCEECHHHHHHC--S---------
T ss_pred             CHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeEEEEcCCCEeccHHHhcC--C---------
Confidence            566777788776666677788899999999999999999999976 3333456899999999888751  0         


Q ss_pred             cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                      |                      ..++|+|.++|.++.|+|..+...+.
T Consensus       152 ~----------------------~~~~v~a~~~~~l~~i~~~~f~~ll~  178 (202)
T 3bpz_A          152 R----------------------RTASVRADTYCRLYSLSVDNFNEVLE  178 (202)
T ss_dssp             B----------------------CSSEEEESSCEEEEEEEHHHHHHHHH
T ss_pred             C----------------------cccEEEEeeEEEEEEEEHHHHHHHHH
Confidence            0                      12499999999999999999987764

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2

Probab=98.27  E-value=2.3e-06  Score=77.87  Aligned_cols=96  Identities=9%  Similarity=0.060  Sum_probs=80.4

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT  315 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~  315 (396)
                      ++..+..|..........++..||+.|++++++++|++|.|++..    |++......+|..+||+.++....     + 
T Consensus        22 ~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~-----~-   95 (232)
T 2gau_A           22 NEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEE-----T-   95 (232)
T ss_dssp             CHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHTS-----C-
T ss_pred             CHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCCC-----C-
Confidence            456688888887777788889999999999999999999999984    899999999999999999887510     0 


Q ss_pred             CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                                                 ..++++|+++|.++.|++..+...+.
T Consensus        96 ---------------------------~~~~~~A~~~~~v~~i~~~~~~~l~~  121 (232)
T 2gau_A           96 ---------------------------CSSTAIAVENSKVLAIPVEAIEALLK  121 (232)
T ss_dssp             ---------------------------CSSEEEESSCEEEEEEEHHHHHHHHH
T ss_pred             ---------------------------cceEEEEecceEEEEEEHHHHHHHHH
Confidence                                       12499999999999999999877654

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}

Probab=98.26  E-value=2.5e-06  Score=75.47  Aligned_cols=96  Identities=9%  Similarity=0.012  Sum_probs=79.6

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhh-hcccccccCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQ-ALTQNIGIAESP  314 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~-aL~~~~~~~~~~  314 (396)
                      ++..+..|.........+++..||+.|++++++++|++|+|++..    |+|-...-.+|..+||+. ++....      
T Consensus        19 ~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~~~~~~~~------   92 (194)
T 3dn7_A           19 TDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYMAFQKQQ------   92 (194)
T ss_dssp             CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCHHHHHHTC------
T ss_pred             CHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeehHHHhcCC------
Confidence            556688888887777788889999999999999999999999986    788888889999999965 655410      


Q ss_pred             CCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         315 TNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       315 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                           |                      ..++++|++||.++.|++..+...+.
T Consensus        93 -----~----------------------~~~~~~a~~~~~v~~i~~~~~~~l~~  119 (194)
T 3dn7_A           93 -----P----------------------ADFYIQSVENCELLSITYTEQENLFE  119 (194)
T ss_dssp             -----B----------------------CSSEEEESSCEEEEEEEHHHHHHHHH
T ss_pred             -----C----------------------CceEEEEECCEEEEEEeHHHHHHHHH
Confidence                 0                      12499999999999999999887654

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=98.26  E-value=2.5e-06  Score=86.06  Aligned_cols=102  Identities=16%  Similarity=0.084  Sum_probs=84.0

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE---cCCcceeecCCccchhhhhcccccccCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV---GKENLVYEAGPFSYFGCQALTQNIGIAESPTN  316 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~---G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~  316 (396)
                      ++..+..|+.........+...||+.|.++|+|++|++|.|+|..   |++......+|..+||+.+|....  ++    
T Consensus       157 ~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G~~fGe~all~~~--pr----  230 (416)
T 3tnp_B          157 DPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNT--PK----  230 (416)
T ss_dssp             CHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEESCCEECGGGGTSCC--CC----
T ss_pred             CHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecCCCEEeeHHHhcCC--Cc----
Confidence            456688888877777777888999999999999999999999987   556667889999999999988621  00    


Q ss_pred             CCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHhhhhh
Q psy4847         317 NSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLMEK  374 (396)
Q Consensus       317 ~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as~~~~  374 (396)
                                                 .+||+|.++|+++.|+|..|...++.....+
T Consensus       231 ---------------------------~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~  261 (416)
T 3tnp_B          231 ---------------------------AATITATSPGALWGLDRVTFRRIIVKNNAKK  261 (416)
T ss_dssp             ---------------------------SSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred             ---------------------------ccEEEEccCeEEEEEeehhhhhhhhcchhHH
Confidence                                       1389999999999999999999987665443

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}

Probab=98.25  E-value=8.9e-07  Score=73.95  Aligned_cols=94  Identities=14%  Similarity=0.045  Sum_probs=74.9

Q ss_pred             cHHHHHHHHhcCCCCCCC-ccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKP-TFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNS  318 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~-~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~  318 (396)
                      ++..+..|..+....... +...||+.|++++++++|++|+|++...... ....+|..+||+.++....          
T Consensus        28 ~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~-~~~l~~G~~fG~~~~~~~~----------   96 (134)
T 2d93_A           28 TMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGK-VENLFMGNSFGITPTLDKQ----------   96 (134)
T ss_dssp             CHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSC-EEEECTTCEESCCSSSCCE----------
T ss_pred             CHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCc-EEEecCCCccChhHhcCCC----------
Confidence            566788888877777777 8889999999999999999999999873222 2668899999998877510          


Q ss_pred             CcccccCCCcccccccccCCcccccCcEE-EEcCCeEEEEEeHHHHHHHH
Q psy4847         319 SAAQAYGGSLQSVNLDSILRYTFVPDYSV-RATTEMFYVKIRRSFYLAAK  367 (396)
Q Consensus       319 ~~~~~~~~s~~~~~~~~~~~~~~~PD~sv-~~~~d~~~~~Itr~~Y~~al  367 (396)
                       |                      ..+++ +|.++|+++.|++..|...+
T Consensus        97 -~----------------------~~~~~~~a~~~~~~~~i~~~~~~~l~  123 (134)
T 2d93_A           97 -Y----------------------MHGIVRTKVDDCQFVCIAQQDYWRIL  123 (134)
T ss_dssp             -E----------------------CCSEEEESSSSEEEEEEEHHHHHHHS
T ss_pred             -c----------------------ceeEEEEEecceEEEEEeHHHHHHHH
Confidence             0                      01377 99999999999999988754

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}

Probab=98.25  E-value=2e-06  Score=78.33  Aligned_cols=96  Identities=16%  Similarity=0.124  Sum_probs=79.6

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT  315 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~  315 (396)
                      ++..+..|..+.......+...||+.|++++++++|++|+|++..    |++-.....+|..+||+.++...     .+ 
T Consensus        18 ~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~-----~~-   91 (231)
T 3e97_A           18 PEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGETAVLAH-----QE-   91 (231)
T ss_dssp             CHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTTTTTCC-----CC-
T ss_pred             CHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeHHHhCC-----CC-
Confidence            456688888887777778888999999999999999999999986    77778889999999999987651     00 


Q ss_pred             CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                                                 ..++++|.++|+++.|++..+...+.
T Consensus        92 ---------------------------~~~~~~a~~~~~v~~i~~~~~~~l~~  117 (231)
T 3e97_A           92 ---------------------------RSASVRALTPVRTLMLHREHFELILR  117 (231)
T ss_dssp             ---------------------------CCEEEEESSCEEEEEECHHHHHHHHH
T ss_pred             ---------------------------ceEEEEECCcEEEEEEeHHHHHHHHH
Confidence                                       12489999999999999999887653

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2

Probab=98.24  E-value=2.5e-06  Score=78.16  Aligned_cols=95  Identities=18%  Similarity=0.133  Sum_probs=79.5

Q ss_pred             cHHHHHHHHhc--CCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCC
Q psy4847         240 VGSLLDRITQK--GTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAES  313 (396)
Q Consensus       240 ~e~vL~~Ll~~--~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~  313 (396)
                      ++..+..|+..  .......++..||+.|++++++++|++|.|++..    |++-.....||..+||+.++....     
T Consensus        30 ~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG~~~~~~~~-----  104 (232)
T 1zyb_A           30 CHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGMN-----  104 (232)
T ss_dssp             CHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEECGGGGSSSC-----
T ss_pred             CHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeeeehHHhCCC-----
Confidence            56678888887  6777788889999999999999999999999985    788888999999999999887510     


Q ss_pred             CCCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHH
Q psy4847         314 PTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAA  366 (396)
Q Consensus       314 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~a  366 (396)
                      +                           ...++++|+++|+++.|++..+...
T Consensus       105 ~---------------------------~~~~~~~A~~~~~v~~i~~~~~~~l  130 (232)
T 1zyb_A          105 T---------------------------NYASSYVAHTEVHTVCISKAFVLSD  130 (232)
T ss_dssp             C---------------------------BCSSEEEESSCEEEEEEEHHHHHHT
T ss_pred             C---------------------------CCceEEEEccceEEEEEEHHHHHHH
Confidence            0                           0124999999999999999987654

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*

Probab=98.24  E-value=2.8e-06  Score=77.64  Aligned_cols=96  Identities=16%  Similarity=0.171  Sum_probs=80.9

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT  315 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~  315 (396)
                      ++..+..|..........++..||+.|++++++++|++|.|++..    |++-...-.||..+||+.++...     .+ 
T Consensus        23 ~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~-----~~-   96 (237)
T 3fx3_A           23 PEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGEAVALRN-----TP-   96 (237)
T ss_dssp             CHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEECHHHHHHT-----CC-
T ss_pred             CHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEechHHHhcC-----CC-
Confidence            556788888887777778888999999999999999999999987    67778889999999999998751     00 


Q ss_pred             CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                                                 ..++++|.++|.++.|++..+...+.
T Consensus        97 ---------------------------~~~~~~a~~~~~v~~i~~~~~~~l~~  122 (237)
T 3fx3_A           97 ---------------------------YPVSAEAVTPCEVMHIPSPVFVSLMR  122 (237)
T ss_dssp             ---------------------------CSSEEEESSSEEEEEEEHHHHHHHHH
T ss_pred             ---------------------------CCceEEECCceEEEEEcHHHHHHHHH
Confidence                                       12489999999999999999877653

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B

Probab=98.24  E-value=3e-06  Score=76.50  Aligned_cols=98  Identities=14%  Similarity=0.077  Sum_probs=79.3

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS  319 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~  319 (396)
                      ++..+..|..........++..||+.|++++++++|++|+|+|... +......+|.++||+.++....           
T Consensus        87 ~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-~~~~~~l~~G~~fGe~~~~~~~-----------  154 (212)
T 3ukn_A           87 SRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD-NTVLAILGKGDLIGSDSLTKEQ-----------  154 (212)
T ss_dssp             CHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESS-SCEEEEECTTCEEECSCCSSSS-----------
T ss_pred             CHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEEC-CeEEEEecCCCCcCcHHhccCC-----------
Confidence            5677888887776666777888999999999999999999999973 4667789999999998877510           


Q ss_pred             cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847         320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA  369 (396)
Q Consensus       320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a  369 (396)
                                          .+-..++|+|.++|+++.|+|..+...+..
T Consensus       155 --------------------~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~  184 (212)
T 3ukn_A          155 --------------------VIKTNANVKALTYCDLQYISLKGLREVLRL  184 (212)
T ss_dssp             --------------------CCBBCSEEEESSCEEEEEEEHHHHHHHHHH
T ss_pred             --------------------CCCcceEEEEcccEEEEEEeHHHHHHHHHH
Confidence                                001124999999999999999999887653

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=98.24  E-value=1.7e-06  Score=78.98  Aligned_cols=95  Identities=22%  Similarity=0.244  Sum_probs=78.0

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS  319 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~  319 (396)
                      ++..+..|..........++..||+.|+++++|++|++|+|+|..... .....+|..+||+.+|....     +     
T Consensus        19 ~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~~-~~~~~~~g~~fGe~~l~~~~-----~-----   87 (246)
T 3of1_A           19 DSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDN-KVNSSGPGSSFGELALMYNS-----P-----   87 (246)
T ss_dssp             CHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTTS-CCEEECTTCEECHHHHHHTC-----C-----
T ss_pred             CHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECCE-EEEecCCCCeeehhHHhcCC-----C-----
Confidence            456688888777777778888999999999999999999999998443 35789999999999987610     1     


Q ss_pred             cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                                             -.+|++|.++|.++.|+|..|...+.
T Consensus        88 -----------------------~~~tv~a~~~~~~~~i~~~~~~~~~~  113 (246)
T 3of1_A           88 -----------------------RAATVVATSDCLLWALDRLTFRKILL  113 (246)
T ss_dssp             -----------------------CSSEEEESSCEEEEEEEHHHHHHTTT
T ss_pred             -----------------------CCcEEEECCCeEEEEEEhHHHHHHHH
Confidence                                   01389999999999999999987653

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}

Probab=98.23  E-value=4.3e-06  Score=75.19  Aligned_cols=96  Identities=13%  Similarity=0.155  Sum_probs=79.5

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccc--hhhhhcccccccCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSY--FGCQALTQNIGIAES  313 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~--~G~~aL~~~~~~~~~  313 (396)
                      ++..+..|..+.......++..||+.|++++++++|++|.|++..    |++-...-.+|..+  ||+.++....     
T Consensus        15 ~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~~~~~~~~-----   89 (220)
T 3dv8_A           15 NTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSASCIMRSI-----   89 (220)
T ss_dssp             CHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGGGGGCTTC-----
T ss_pred             CHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhHHHHhCCC-----
Confidence            456688888887777778888999999999999999999999987    77777888899998  7888877510     


Q ss_pred             CCCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         314 PTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       314 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                      +                            ..++++|.+||+++.|++..+...+.
T Consensus        90 ~----------------------------~~~~~~a~~~~~~~~i~~~~~~~l~~  116 (220)
T 3dv8_A           90 Q----------------------------FEVTIEAEKDTDLWIIPAEIYKGIMK  116 (220)
T ss_dssp             C----------------------------CCCEEEESSCEEEEEEEHHHHHHHHH
T ss_pred             C----------------------------CceEEEEeeeeEEEEEEHHHHHHHHH
Confidence            0                            12489999999999999999877654

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*

Probab=98.22  E-value=1.3e-06  Score=79.24  Aligned_cols=94  Identities=22%  Similarity=0.281  Sum_probs=77.7

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT  315 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~  315 (396)
                      ++..+..|+.+.......+...||+.|++++++++|++|+|.+..    |++-.....+|..+||+.++....     + 
T Consensus        18 ~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~-----~-   91 (227)
T 3d0s_A           18 EPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPG-----P-   91 (227)
T ss_dssp             CSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCHHHHSCS-----C-
T ss_pred             CHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeHHHcCCC-----C-
Confidence            345567777777777778888999999999999999999999986    777788899999999998877510     0 


Q ss_pred             CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHH
Q psy4847         316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAA  366 (396)
Q Consensus       316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~a  366 (396)
                                                 ..++++|.++|.++.|++..+...
T Consensus        92 ---------------------------~~~~~~A~~~~~v~~i~~~~~~~l  115 (227)
T 3d0s_A           92 ---------------------------RTSSATTITEVRAVSMDRDALRSW  115 (227)
T ss_dssp             ---------------------------CSSEEEESSCEEEEEEEHHHHHHT
T ss_pred             ---------------------------ceeEEEEcccEEEEEEeHHHHHHH
Confidence                                       124899999999999999988754

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=98.22  E-value=4.1e-06  Score=79.46  Aligned_cols=98  Identities=16%  Similarity=0.100  Sum_probs=80.2

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS  319 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~  319 (396)
                      ++..+..|.+........++..||+.|+++++|++|++|.|+|... +......+|..+||+.+|....           
T Consensus        51 ~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~-g~~~~~~~~G~~fGe~~ll~~~-----------  118 (299)
T 3shr_A           51 ELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKE-GVKLCTMGPGKVFGELAILYNC-----------  118 (299)
T ss_dssp             CHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEET-TEEEEEECTTCEESCSGGGTTT-----------
T ss_pred             CHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEEC-CEEEEEeCCCCeeeHhHHhcCC-----------
Confidence            4566777887776666778889999999999999999999999763 3566789999999999988520           


Q ss_pred             cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHhh
Q psy4847         320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATL  371 (396)
Q Consensus       320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as~  371 (396)
                      |                      -.+||+|.++|.++.|+|..|...+....
T Consensus       119 ~----------------------~~~tv~a~~~~~l~~i~~~~~~~i~~~~~  148 (299)
T 3shr_A          119 T----------------------RTATVKTLVNVKLWAIDRQCFQTIMMRTG  148 (299)
T ss_dssp             B----------------------CCSEEEESSCEEEEEECHHHHHHHHHHHH
T ss_pred             C----------------------CCcEEEEcCCeEEEEEcHHHHHHHhhHhH
Confidence            0                      02389999999999999999999887654

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=98.21  E-value=4.7e-06  Score=78.52  Aligned_cols=96  Identities=19%  Similarity=0.117  Sum_probs=78.9

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS  319 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~  319 (396)
                      ++..+..|.+........++..||+.|++++.|++|++|+|.|.. ........+|..+||+.+|....           
T Consensus        51 ~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~g~~~~~l~~G~~fGe~~l~~~~-----------  118 (291)
T 2qcs_B           51 DDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NNEWATSVGEGGSFGELALIYGT-----------  118 (291)
T ss_dssp             CHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE-TTEEEEEECTTCEECGGGGTCCC-----------
T ss_pred             CHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-CCeEEEEcCCCCccchHHHhcCC-----------
Confidence            456677788777666677888999999999999999999999998 33567888999999998887510           


Q ss_pred             cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847         320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA  369 (396)
Q Consensus       320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a  369 (396)
                      |                      -.++++|.++|.++.|+|..|...+..
T Consensus       119 ~----------------------~~~tv~a~~~~~~~~i~~~~~~~~~~~  146 (291)
T 2qcs_B          119 P----------------------RAATVKAKTNVKLWGIDRDSYRRILMG  146 (291)
T ss_dssp             B----------------------CSSEEEESSCEEEEEEEHHHHHHHHHH
T ss_pred             C----------------------CceEEEECCCEEEEEEEhHHHHHHHhh
Confidence            0                      024999999999999999999988754

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}

Probab=98.20  E-value=2.1e-06  Score=77.66  Aligned_cols=96  Identities=10%  Similarity=0.112  Sum_probs=80.0

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT  315 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~  315 (396)
                      ++..+..|..+.......++..||+.|++++++++|++|.|++..    |++-...-.||..+||+.++...  .     
T Consensus        21 ~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~--~-----   93 (227)
T 3dkw_A           21 SPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMD--T-----   93 (227)
T ss_dssp             CHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCTTTTTT--C-----
T ss_pred             CHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHhcCC--C-----
Confidence            556688888887777788889999999999999999999999986    78888999999999999887641  0     


Q ss_pred             CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847         316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK  367 (396)
Q Consensus       316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al  367 (396)
                          |                     .-.++++|.++|.++.|++..+...+
T Consensus        94 ----~---------------------~~~~~~~a~~~~~v~~i~~~~~~~l~  120 (227)
T 3dkw_A           94 ----P---------------------NYVATAQAVVPSQLFRFSNKAYLRQL  120 (227)
T ss_dssp             ----S---------------------BCSSCEEESSCCEEEEEESHHHHHHH
T ss_pred             ----C---------------------CCceEEEEcCcEEEEEEeHHHHHHHH
Confidence                0                     01248999999999999999887654

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=98.19  E-value=3.3e-06  Score=80.08  Aligned_cols=96  Identities=16%  Similarity=0.175  Sum_probs=78.2

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEc-----CCcceeecCCccchhhhhcccccccCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVG-----KENLVYEAGPFSYFGCQALTQNIGIAESP  314 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G-----~e~~~~E~gpfs~~G~~aL~~~~~~~~~~  314 (396)
                      ++..+.+|..........+...||+.|++++++++|++|+|+|...     ++......+|..+||+.+|....      
T Consensus       169 ~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~------  242 (299)
T 3shr_A          169 PEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQGED------  242 (299)
T ss_dssp             CHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEECGGGGSSSE------
T ss_pred             CHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeChHHHhCCC------
Confidence            3455777777666666778889999999999999999999999873     45678899999999999987510      


Q ss_pred             CCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         315 TNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       315 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                           |                      -.++|+|.++|+++.|+|..|...+.
T Consensus       243 -----~----------------------~~~tv~a~~~~~l~~i~~~~f~~ll~  269 (299)
T 3shr_A          243 -----V----------------------RTANVIAAEAVTCLVIDRDSFKHLIG  269 (299)
T ss_dssp             -----E----------------------CSSEEEESSSEEEEEEEHHHHHHHHT
T ss_pred             -----C----------------------cceEEEECCCEEEEEEeHHHHHHHHc
Confidence                 0                      02499999999999999999987754

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=98.19  E-value=5.5e-06  Score=78.04  Aligned_cols=95  Identities=26%  Similarity=0.230  Sum_probs=75.4

Q ss_pred             HHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----c-CCcceeecCCccchhhhhcccccccCCCCC
Q psy4847         241 GSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----G-KENLVYEAGPFSYFGCQALTQNIGIAESPT  315 (396)
Q Consensus       241 e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G-~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~  315 (396)
                      ...+..|..........+...||+.|+++|+|++|++|+|+|..    | ++-.....||..+||+.+|....     + 
T Consensus       170 ~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~-----~-  243 (291)
T 2qcs_B          170 KWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNR-----P-  243 (291)
T ss_dssp             HHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEECSGGGTCCC-----C-
T ss_pred             HHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEecHHHHcCCC-----C-
Confidence            44456666665566667778899999999999999999999985    2 23467889999999999987510     0 


Q ss_pred             CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                                                 -.+||+|.++|+.+.|+|..|...+.
T Consensus       244 ---------------------------~~~tv~a~~~~~~~~i~~~~f~~~l~  269 (291)
T 2qcs_B          244 ---------------------------KAATVVARGPLKCVKLDRPRFERVLG  269 (291)
T ss_dssp             ---------------------------CSSEEEEEEEEEEEEEEHHHHHHHHC
T ss_pred             ---------------------------cceEEEECCcEEEEEEcHHHHHHHhc
Confidence                                       12499999999999999999987664

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=98.17  E-value=3.9e-06  Score=93.45  Aligned_cols=79  Identities=16%  Similarity=0.161  Sum_probs=68.7

Q ss_pred             ccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCCcccccCCCcccccccccC
Q psy4847         258 TFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSIL  337 (396)
Q Consensus       258 ~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  337 (396)
                      .+..||+.|++.|.|++|++|.|+|....++...+.|++.+||+.||...  .++.                        
T Consensus       368 aGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~v~~L~~Gd~FGElALL~~--~PR~------------------------  421 (999)
T 4f7z_A          368 GGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVND--APRA------------------------  421 (999)
T ss_dssp             TTCEEECTTSBCCEEEEEEESEEEEEETTTEEEEEEETTCEECGGGGTCS--CBCS------------------------
T ss_pred             CCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcceEEecCCCcccchhhccC--CCee------------------------
Confidence            35679999999999999999999999988889999999999999999862  2222                        


Q ss_pred             CcccccCcEEEEcC-CeEEEEEeHHHHHHHHHH
Q psy4847         338 RYTFVPDYSVRATT-EMFYVKIRRSFYLAAKRA  369 (396)
Q Consensus       338 ~~~~~PD~sv~~~~-d~~~~~Itr~~Y~~al~a  369 (396)
                             +||++.+ ||+|+.|+|+.|...++-
T Consensus       422 -------aTV~a~~d~c~fl~i~k~df~~il~~  447 (999)
T 4f7z_A          422 -------ASIVLREDNCHFLRVDKEDGNRILRD  447 (999)
T ss_dssp             -------SEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred             -------EEEEEecCceEEEEeeHHHHHHHHhH
Confidence                   2999988 599999999999998753

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*

Probab=98.14  E-value=5e-06  Score=76.77  Aligned_cols=96  Identities=16%  Similarity=0.089  Sum_probs=78.3

Q ss_pred             HHHHHHHHhcCC---CCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCC
Q psy4847         241 GSLLDRITQKGT---SQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAES  313 (396)
Q Consensus       241 e~vL~~Ll~~~~---v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~  313 (396)
                      +..++.|.....   .....+...||+.|++++++++|++|.|++..    |++-...-.||..+||+.++....     
T Consensus        30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~-----  104 (243)
T 3la7_A           30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGN-----  104 (243)
T ss_dssp             HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSC-----
T ss_pred             HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCC-----
Confidence            467777777766   66678888999999999999999999999987    788889999999999998877510     


Q ss_pred             CCCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847         314 PTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK  367 (396)
Q Consensus       314 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al  367 (396)
                            |                    ..--++++|+++|.++.|++..+...+
T Consensus       105 ------~--------------------~~~~~~~~A~~~~~v~~i~~~~~~~l~  132 (243)
T 3la7_A          105 ------K--------------------SDRFYHAVAFTPVELLSAPIEQVEQAL  132 (243)
T ss_dssp             ------C--------------------SBCCEEEEESSSEEEEEEEHHHHHHHH
T ss_pred             ------C--------------------CcceEEEEEccceEEEEEcHHHHHHHH
Confidence                  0                    000158999999999999999887654

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.14  E-value=3.7e-06  Score=64.06  Aligned_cols=63  Identities=10%  Similarity=0.109  Sum_probs=49.5

Q ss_pred             EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc-c-CCc---cccchhhhhhhhcCCceE
Q psy4847          55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL-V-DPD---DNTPLKTLCQFYQNSCYF  123 (396)
Q Consensus        55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~-~-~~~---~~~~l~~v~~~~~~~v~~  123 (396)
                      ++++++++++. ++++.|.+++++.+||.++  ++++||++.+||+. + ...   ...+++++|.   +++.+
T Consensus         2 ~vtv~p~~tv~-ea~~~M~~~~i~~~~V~d~--~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt---~~~iT   69 (70)
T 3ghd_A            2 AIVVQPKDTVD-RVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVVAKGKNPKEVKVEEIMT---KNPVK   69 (70)
T ss_dssp             EEEECTTCBHH-HHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCE---ECTTC
T ss_pred             CEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcC---CCCeE
Confidence            67899999999 9999999999999999975  78999999999963 2 111   2346666664   55543

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=98.14  E-value=5.4e-06  Score=82.49  Aligned_cols=97  Identities=18%  Similarity=0.126  Sum_probs=80.2

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS  319 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~  319 (396)
                      ++..+..|+.........++..||+.|.++++|++|++|.|+|..+. ......+|..+||+.+|....           
T Consensus       142 ~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~~-~~v~~l~~G~~fGe~all~~~-----------  209 (381)
T 4din_B          142 DDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNG-EWVTNISEGGSFGELALIYGT-----------  209 (381)
T ss_dssp             CHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEETT-EEEEEEESSCCBCGGGGTSCC-----------
T ss_pred             CHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEECC-eEeeeCCCCCEEEchHHhcCC-----------
Confidence            56677888887777777888899999999999999999999999854 356679999999999988621           


Q ss_pred             cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHh
Q psy4847         320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRAT  370 (396)
Q Consensus       320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as  370 (396)
                      |                      -.+||+|.++|.++.|+|..|...++..
T Consensus       210 ~----------------------r~atv~A~~~~~l~~i~~~~f~~ll~~~  238 (381)
T 4din_B          210 P----------------------RAATVKAKTDLKLWGIDRDSYRRILMGS  238 (381)
T ss_dssp             B----------------------CSSEEEESSSCEEEEEEHHHHHHHHHHH
T ss_pred             C----------------------cceEEEECCCEEEEEEchHHHHHhhhhh
Confidence            0                      0139999999999999999999887654

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*

Probab=98.13  E-value=4.8e-06  Score=80.34  Aligned_cols=94  Identities=19%  Similarity=0.148  Sum_probs=77.0

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT  315 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~  315 (396)
                      ++..+..|..........+...||+.|+++++|++|++|.|+|..    |++ .....+|..+||+.+|...  .     
T Consensus        25 ~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~G~~fGe~~l~~~--~-----   96 (333)
T 4ava_A           25 PAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-IIARALPGMIVGEIALLRD--S-----   96 (333)
T ss_dssp             CHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-EEEEECTTCEESHHHHHHT--C-----
T ss_pred             CHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-EEEEecCCCEeeHHHhcCC--C-----
Confidence            456677787777677777888999999999999999999999986    443 7778899999999998762  0     


Q ss_pred             CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847         316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK  367 (396)
Q Consensus       316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al  367 (396)
                          |                      -.+||+|+++|.++.|+|..|...+
T Consensus        97 ----~----------------------~~~~v~A~~~~~~~~i~~~~~~~l~  122 (333)
T 4ava_A           97 ----P----------------------RSATVTTIEPLTGWTGGRGAFATMV  122 (333)
T ss_dssp             ----B----------------------CSSEEEESSCEEEEEECHHHHHHHH
T ss_pred             ----C----------------------ceEEEEEecCEEEEEEcHHHHHHHH
Confidence                0                      0139999999999999999997654

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.11  E-value=2.2e-06  Score=79.59  Aligned_cols=60  Identities=22%  Similarity=0.331  Sum_probs=50.3

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      ....+|+++|+| .+++++++++++. ++++.|.+++++++||++++ |+++|+|+.+||+..
T Consensus       182 ~~~~~v~~im~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dll~~  241 (245)
T 3l2b_A          182 VQSLPVDYVMTK-DNLVAVSTDDLVE-DVKVTMSETRYSNYPVIDEN-NKVVGSIARFHLIST  241 (245)
T ss_dssp             GGGSBHHHHSBC-TTCCCEETTSBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEECC-----
T ss_pred             hcCCceeeEecC-CccEEECCCCcHH-HHHHHHHhcCCceEEEEcCC-CeEEEEEEHHHhhch
Confidence            356789999997 6789999999999 99999999999999999765 899999999999854

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=98.10  E-value=1.5e-05  Score=79.28  Aligned_cols=95  Identities=24%  Similarity=0.177  Sum_probs=75.8

Q ss_pred             HHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEc----C-CcceeecCCccchhhhhcccccccCCCCC
Q psy4847         241 GSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVG----K-ENLVYEAGPFSYFGCQALTQNIGIAESPT  315 (396)
Q Consensus       241 e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G----~-e~~~~E~gpfs~~G~~aL~~~~~~~~~~~  315 (396)
                      +..+.+|..........++..||+.|+++++|++|++|+|+|...    + +......||..+||+.+|...  .     
T Consensus       261 ~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fGe~all~~--~-----  333 (381)
T 4din_B          261 KWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLN--R-----  333 (381)
T ss_dssp             TTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEECTTGGGSC--C-----
T ss_pred             HHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEechHHHhCC--C-----
Confidence            344556666556666777888999999999999999999999873    3 334788999999999998861  0     


Q ss_pred             CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                          |                      -.+||+|.++|.++.|+|..|...+.
T Consensus       334 ----~----------------------r~~tv~A~~~~~ll~i~~~~f~~ll~  360 (381)
T 4din_B          334 ----P----------------------RAATVVARGPLKCVKLDRPRFERVLG  360 (381)
T ss_dssp             ----B----------------------CSSEEEESSCBEEEEEEHHHHHHHHC
T ss_pred             ----C----------------------ceeEEEEcCCEEEEEEeHHHHHHHHh
Confidence                0                      01499999999999999999988764

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=98.06  E-value=8.3e-06  Score=82.24  Aligned_cols=96  Identities=14%  Similarity=0.076  Sum_probs=76.6

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----------cCCcceeecCCccchhhhhcccccc
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----------GKENLVYEAGPFSYFGCQALTQNIG  309 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----------G~e~~~~E~gpfs~~G~~aL~~~~~  309 (396)
                      ++..+.+|..........+...||+.|.++++|++|++|+|+|..          |++......||..+||+.+|...  
T Consensus       279 s~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G~~fGE~all~~--  356 (416)
T 3tnp_B          279 EVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTN--  356 (416)
T ss_dssp             CHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTTCEESGGGGTCC--
T ss_pred             CHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCCCEecHHHHhCC--
Confidence            445566777666666667788899999999999999999999975          56677889999999999999851  


Q ss_pred             cCCCCCCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         310 IAESPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       310 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                      .   +                            -.+||+|.++|.++.|+|..|...+.
T Consensus       357 ~---~----------------------------r~~tv~A~~~~~ll~I~~~~f~~ll~  384 (416)
T 3tnp_B          357 K---P----------------------------RAASAHAIGTVKCLAMDVQAFERLLG  384 (416)
T ss_dssp             S---C----------------------------CSSEEEEEEEEEEEEEEHHHHHHHHC
T ss_pred             C---C----------------------------ceeEEEEcCCeEEEEEEHHHHHHHhc
Confidence            0   0                            02399999999999999999987764

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2

Probab=98.05  E-value=8.4e-06  Score=73.63  Aligned_cols=89  Identities=16%  Similarity=0.174  Sum_probs=71.0

Q ss_pred             HHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCCCCCccc
Q psy4847         247 ITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQ  322 (396)
Q Consensus       247 Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~  322 (396)
                      +..........+...||+.|++++++++|++|.|.+..    |++-...-.+|..+||+.++....    .      |  
T Consensus        18 l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~----~------~--   85 (213)
T 1o5l_A           18 LLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSE----P------R--   85 (213)
T ss_dssp             GGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSS----C------B--
T ss_pred             HhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCC----C------C--
Confidence            33444455566778899999999999999999999985    777888899999999999876410    0      0  


Q ss_pred             ccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847         323 AYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK  367 (396)
Q Consensus       323 ~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al  367 (396)
                                          ..++++|+++|..+.|++..+...+
T Consensus        86 --------------------~~~~~~A~~~~~v~~i~~~~~~~l~  110 (213)
T 1o5l_A           86 --------------------FPVNVVAGENSKILSIPKEVFLDLL  110 (213)
T ss_dssp             --------------------CSSEEEESSSEEEEEEEHHHHHHHH
T ss_pred             --------------------ceEEEEEccceEEEEEeHHHHHHHH
Confidence                                1249999999999999999877654

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.05  E-value=2.2e-06  Score=78.34  Aligned_cols=100  Identities=6%  Similarity=0.042  Sum_probs=51.8

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSC  121 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v  121 (396)
                      +.+|+++|++.  ++++++++++. ++++.|.+++++++||++++ ++++|+|+.+||+...... ....+.+..+ . +
T Consensus        71 ~~~v~~im~~~--~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~Dil~~~~~~-~~~~~~~~~l-~-~  143 (213)
T 1vr9_A           71 DSSVFNKVSLP--DFFVHEEDNIT-HALLLFLEHQEPYLPVVDEE-MRLKGAVSLHDFLEALIEA-LAMDVPGIRF-S-V  143 (213)
T ss_dssp             TSBSGGGCBCT--TCCEETTSBHH-HHHHHHHHCCCSEEEEECTT-CBEEEEEEHHHHHHHHHHS-CC------------
T ss_pred             CCcHHHHccCC--CEEECCCCcHH-HHHHHHHHhCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHH-hcCCCCcEEE-E-E
Confidence            45799999974  78899999999 99999999999999999865 7999999999997532111 1112222110 1 1


Q ss_pred             eEEcCCCCHHHHHHHHHhcCCceEEEEE
Q psy4847         122 YFVFEDTTLDVLLKQFKEGIKGHMAFVH  149 (396)
Q Consensus       122 ~~V~~dt~L~~~L~~f~~~~~~h~avV~  149 (396)
                      .......++.++++.|.+. +.+.++|.
T Consensus       144 ~~~~~~~~l~~~~~~l~~~-~~~~l~V~  170 (213)
T 1vr9_A          144 LLEDKPGELRKVVDALALS-NINILSVI  170 (213)
T ss_dssp             ----------------------------
T ss_pred             EeCCCCccHHHHHHHHHHC-CCcEEEEE
Confidence            1113344599999999995 77877775

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=98.04  E-value=1.4e-05  Score=80.72  Aligned_cols=96  Identities=15%  Similarity=0.161  Sum_probs=75.9

Q ss_pred             cHHHHHHHHhcCCCC-CCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQ-QKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNS  318 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~-~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~  318 (396)
                      ++..+..|....... ...++..||+.|+++++|++|++|+|+|....++.....+|..+||+.++....     +    
T Consensus       349 ~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~-----~----  419 (469)
T 1o7f_A          349 STTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDA-----P----  419 (469)
T ss_dssp             CHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTEEEEEEETTCEECGGGGTCCS-----C----
T ss_pred             CHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCeeEEEecCCCEEEEehhhcCC-----C----
Confidence            344555565554322 466778899999999999999999999988655688999999999999987510     0    


Q ss_pred             CcccccCCCcccccccccCCcccccCcEEEEcC-CeEEEEEeHHHHHHHHH
Q psy4847         319 SAAQAYGGSLQSVNLDSILRYTFVPDYSVRATT-EMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       319 ~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~-d~~~~~Itr~~Y~~al~  368 (396)
                                              -.+||+|.+ +|+++.|+|..|...+.
T Consensus       420 ------------------------~~~tv~a~~~~~~~~~i~~~~f~~ll~  446 (469)
T 1o7f_A          420 ------------------------RAASIVLREDNCHFLRVDKEDFNRILR  446 (469)
T ss_dssp             ------------------------CSSEEEESSSSEEEEEEEHHHHHHHHH
T ss_pred             ------------------------ceEEEEEecCCEEEEEEcHHHHHHHHH
Confidence                                    124999998 79999999999987664

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=98.04  E-value=1.6e-05  Score=88.57  Aligned_cols=96  Identities=16%  Similarity=0.143  Sum_probs=78.2

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE------cCCcceeecCCccchhhhhcccccccCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV------GKENLVYEAGPFSYFGCQALTQNIGIAES  313 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~------G~e~~~~E~gpfs~~G~~aL~~~~~~~~~  313 (396)
                      .+..|+.|.++......+++..||+.|+++|+|++|++|+|+|.+      +.+...-+.+|+++||+ ||..+  .+++
T Consensus        54 ~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~sFGE-all~n--~pRt  130 (999)
T 4f7z_A           54 HPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDN--TPRH  130 (999)
T ss_dssp             CHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTCEECG-GGGGT--CCCS
T ss_pred             CHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCcchhh-hhccC--CCcc
Confidence            456677788877777778888999999999999999999999998      34556679999999999 66541  1111


Q ss_pred             CCCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847         314 PTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA  369 (396)
Q Consensus       314 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a  369 (396)
                      .                               ||+|.++|..++|+|.+|...++.
T Consensus       131 a-------------------------------Tv~a~~~s~l~~l~r~~F~~i~~~  155 (999)
T 4f7z_A          131 A-------------------------------TIVTRESSELLRIEQEDFKALWEK  155 (999)
T ss_dssp             S-------------------------------EEEESSSEEEEEEEHHHHHHHHHH
T ss_pred             e-------------------------------EEEeccceEEEEEEHHHHHHHHHh
Confidence            1                               899999999999999999987753

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A

Probab=98.00  E-value=6.3e-06  Score=76.22  Aligned_cols=92  Identities=17%  Similarity=0.169  Sum_probs=75.7

Q ss_pred             HHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCC
Q psy4847         241 GSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTN  316 (396)
Q Consensus       241 e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~  316 (396)
                      +..+..|..........++..||+.|++++++++|++|.|++..    |++-...-.+|..+||+ .+..          
T Consensus        22 ~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~-~l~~----------   90 (250)
T 3e6c_C           22 IEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK-LYPT----------   90 (250)
T ss_dssp             CGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC-CSCC----------
T ss_pred             HHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee-ecCC----------
Confidence            34456666666677778888999999999999999999999987    77778899999999999 4432          


Q ss_pred             CCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         317 NSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       317 ~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                                             .  ..++++|.++|+++.|++..+...+.
T Consensus        91 -----------------------~--~~~~~~A~~~~~v~~i~~~~~~~l~~  117 (250)
T 3e6c_C           91 -----------------------G--NNIYATAMEPTRTCWFSEKSLRTVFR  117 (250)
T ss_dssp             -----------------------S--CCEEEEESSSEEEEEECHHHHHHHHH
T ss_pred             -----------------------C--CceEEEEcccEEEEEEcHHHHHHHHH
Confidence                                   1  23599999999999999999887654

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=97.94  E-value=6.5e-06  Score=72.00  Aligned_cols=58  Identities=24%  Similarity=0.297  Sum_probs=52.2

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      ....+|+++|++.  ++++++++++. ++++.|.++++.++||+++  |+++|+|+.+||+..
T Consensus       102 ~~~~~v~~im~~~--~~tv~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~lvGivt~~Dil~~  159 (170)
T 4esy_A          102 GRKLTASAVMTQP--VVTAAPEDSVG-SIADQMRRHGIHRIPVVQD--GVPVGIVTRRDLLKL  159 (170)
T ss_dssp             HTTCBHHHHCBCC--SCCBCTTSBHH-HHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHTTT
T ss_pred             ccccchhhhcccC--cccCCcchhHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHHHH
Confidence            3567899999965  78999999999 9999999999999999974  799999999999864

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=97.91  E-value=1.8e-05  Score=64.49  Aligned_cols=72  Identities=21%  Similarity=0.298  Sum_probs=57.7

Q ss_pred             cCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        23 ~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .|-++..+..   +++.-...+|+++|++.  +.+++.++++. ++++.|.+++++++||++++ |+++|+|+.+||+.
T Consensus        45 ~G~vt~~dl~---~~~~~~~~~v~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-g~~~Givt~~dl~~  116 (122)
T 3kpb_A           45 VGIITSWDIA---KALAQNKKTIEEIMTRN--VITAHEDEPVD-HVAIKMSKYNISGVPVVDDY-RRVVGIVTSEDISR  116 (122)
T ss_dssp             EEEECHHHHH---HHHHTTCCBGGGTSBSS--CCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHH
T ss_pred             EEEEEHHHHH---HHHHhcccCHHHHhcCC--CeEECCCCCHH-HHHHHHHHhCCCeEEEECCC-CCEEEEEeHHHHHH
Confidence            3556655543   23333455899999864  78899999999 99999999999999999765 89999999999975

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A

Probab=97.88  E-value=3.7e-05  Score=70.50  Aligned_cols=95  Identities=7%  Similarity=0.052  Sum_probs=73.7

Q ss_pred             HHHHHHHHh--cCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCC
Q psy4847         241 GSLLDRITQ--KGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESP  314 (396)
Q Consensus       241 e~vL~~Ll~--~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~  314 (396)
                      +.-+..++.  +.......+...||+.|++++++++|++|+|++..    |++-...-. |..+||+.++....     +
T Consensus         6 ~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~-----~   79 (238)
T 2bgc_A            6 AEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTE-----T   79 (238)
T ss_dssp             HHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTC-----C
T ss_pred             HHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCC-----C
Confidence            455677774  35666678888999999999999999999999987    777666667 99999998877510     0


Q ss_pred             CCCCCcccccCCCcccccccccCCcccccCcEEEEcC-CeEEEEEeHHHHHHHH
Q psy4847         315 TNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATT-EMFYVKIRRSFYLAAK  367 (396)
Q Consensus       315 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~-d~~~~~Itr~~Y~~al  367 (396)
                                               .+ -.|++.|.+ +|.++.|++..+...+
T Consensus        80 -------------------------~~-~~~~~~a~~~~~~v~~i~~~~~~~l~  107 (238)
T 2bgc_A           80 -------------------------SV-GYYNLEVISEQATAYVIKINELKELL  107 (238)
T ss_dssp             -------------------------BS-CCCEEEECSSEEEEEEEEHHHHHHHH
T ss_pred             -------------------------cC-cceeEEEEEcceEEEEEeHHHHHHHH
Confidence                                     00 035888985 9999999999887655

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=97.88  E-value=1.6e-05  Score=68.65  Aligned_cols=61  Identities=13%  Similarity=0.266  Sum_probs=54.2

Q ss_pred             cccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCC---cEEEEEEhhhhcc
Q psy4847          39 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRT---NIVTMFYIKDLAL  101 (396)
Q Consensus        39 el~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~---~IVGiL~vkDLl~  101 (396)
                      ...+.+|+++|++..++++++.++++. ++++.|.++++.++||++++ +   +++|+|+.+||+.
T Consensus        77 ~~~~~~v~~~m~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~~~vGiit~~dil~  140 (159)
T 3fv6_A           77 ELTSVPVHIIMTRMPNITVCRREDYVM-DIAKHLIEKQIDALPVIKDT-DKGFEVIGRVTKTNMTK  140 (159)
T ss_dssp             CTTTCBGGGTSEETTSCCCBCTTSBHH-HHHHHHHHHTCSEEEEEEEC-SSSEEEEEEEEHHHHHH
T ss_pred             cccCcCHHHHHcCCCCcEEECCCCCHH-HHHHHHHHcCCcEEEEEeCC-CcceeEEEEEEHHHHHH
Confidence            356789999999855688999999999 99999999999999999865 5   8999999999974

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*

Probab=97.87  E-value=1.5e-05  Score=71.95  Aligned_cols=85  Identities=13%  Similarity=0.052  Sum_probs=69.4

Q ss_pred             HHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE---cCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847         243 LLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV---GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS  319 (396)
Q Consensus       243 vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~---G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~  319 (396)
                      .+..|..........+...||+.|++++++++|++|.|++..   |++-...-.||..+||+    .      .      
T Consensus        19 ~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~----~------~------   82 (220)
T 2fmy_A           19 EYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT----H------T------   82 (220)
T ss_dssp             GGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES----C------S------
T ss_pred             HHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC----c------c------
Confidence            345556555566677888899999999999999999999954   77777888999999998    1      0      


Q ss_pred             cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847         320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK  367 (396)
Q Consensus       320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al  367 (396)
                                              .++++|+++|+++.|++..+...+
T Consensus        83 ------------------------~~~~~A~~~~~v~~i~~~~~~~l~  106 (220)
T 2fmy_A           83 ------------------------RAFIQAMEDTTILYTDIRNFQNIV  106 (220)
T ss_dssp             ------------------------SSEEEESSSEEEEEEEHHHHHHHH
T ss_pred             ------------------------ceEEEEcCcEEEEEEeHHHHHHHH
Confidence                                    138999999999999999987655

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A

Probab=97.87  E-value=1.7e-05  Score=70.43  Aligned_cols=73  Identities=21%  Similarity=0.199  Sum_probs=61.5

Q ss_pred             CccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCCCCCcccccCCCccccc
Q psy4847         257 PTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVN  332 (396)
Q Consensus       257 ~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~~s~~~~~  332 (396)
                      ++...||+.|++++++++|++|+|++..    |++-.....+|..+||+ ++....           |            
T Consensus         5 ~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~-----------~------------   60 (195)
T 3b02_A            5 ARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGK-----------A------------   60 (195)
T ss_dssp             CTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCS-----------B------------
T ss_pred             CCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCC-----------C------------
Confidence            4667899999999999999999999986    77778889999999999 876510           0            


Q ss_pred             ccccCCcccccCcEEEEcCCeEEEEEeHHHH
Q psy4847         333 LDSILRYTFVPDYSVRATTEMFYVKIRRSFY  363 (396)
Q Consensus       333 ~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y  363 (396)
                                ..++++|.++|.++.|++..+
T Consensus        61 ----------~~~~~~A~~~~~v~~i~~~~~   81 (195)
T 3b02_A           61 ----------YRYTAEAMTEAVVQGLEPRAM   81 (195)
T ss_dssp             ----------CSSEEEESSSEEEEEECGGGC
T ss_pred             ----------ceeEEEECCcEEEEEEcHHHc
Confidence                      124999999999999999765

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=97.87  E-value=3.9e-05  Score=77.43  Aligned_cols=96  Identities=17%  Similarity=0.147  Sum_probs=78.4

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cC--CcceeecCCccchhhhhcccccccCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GK--ENLVYEAGPFSYFGCQALTQNIGIAES  313 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~--e~~~~E~gpfs~~G~~aL~~~~~~~~~  313 (396)
                      ++..+..|..+.......++..||+.|+++++|++|++|+|.|..    |+  +......||..+||+.+ ...  .   
T Consensus        54 ~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~~~G~~fGe~~-l~~--~---  127 (469)
T 1o7f_A           54 HPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESI-LDN--T---  127 (469)
T ss_dssp             CHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCEECGGG-GGT--C---
T ss_pred             CHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCcceEEEEccCCCCcchhh-hCC--C---
Confidence            566688888877777778888999999999999999999999987    32  35788999999999987 431  0   


Q ss_pred             CCCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847         314 PTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA  369 (396)
Q Consensus       314 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a  369 (396)
                      +                            -.++|+|.++|.++.|+|..|...+..
T Consensus       128 ~----------------------------~~~tv~A~~~~~l~~i~~~~~~~l~~~  155 (469)
T 1o7f_A          128 P----------------------------RHATIVTRESSELLRIEQEDFKALWEK  155 (469)
T ss_dssp             B----------------------------CSSEEEESSSEEEEEEEHHHHHHHHHH
T ss_pred             C----------------------------ccceEEEccceeEEEEcHHHHHHHHHh
Confidence            0                            023999999999999999999887653

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=97.82  E-value=2.2e-05  Score=64.18  Aligned_cols=74  Identities=22%  Similarity=0.208  Sum_probs=59.5

Q ss_pred             cCCCCHHHHH-HHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          23 FNDLEKDEVN-IISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        23 ~~~l~~~E~~-~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .|-++..+.. .+..-..+.+.+|+++|++.  +.+++.++++. ++++.|.+++++++||+++  |+++|+|+.+||+.
T Consensus        44 ~G~it~~dl~~~~~~~~~~~~~~v~~~m~~~--~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~--~~~~Gvit~~dl~~  118 (125)
T 1pbj_A           44 VGIVTTWDVLEAIAEGDDLAEVKVWEVMERD--LVTISPRATIK-EAAEKMVKNVVWRLLVEED--DEIIGVISATDILR  118 (125)
T ss_dssp             EEEEEHHHHHHHHHHTCCTTTSBHHHHCBCG--GGEECTTSCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHH
T ss_pred             EEEEeHHHHHHHHhcCCcccccCHHHHcCCC--CeEECCCCCHH-HHHHHHHhcCCcEEEEEEC--CEEEEEEEHHHHHH
Confidence            3556666643 22232345688999999864  78999999999 9999999999999999986  79999999999974

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=97.80  E-value=1.6e-05  Score=67.07  Aligned_cols=57  Identities=21%  Similarity=0.420  Sum_probs=50.9

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ...+|+++|++.  +++++.++++. ++++.|.+++++++||++++ |+++|+|+.+||+.
T Consensus        83 ~~~~v~~~m~~~--~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dil~  139 (152)
T 4gqw_A           83 NGKLVGDLMTPA--PLVVEEKTNLE-DAAKILLETKYRRLPVVDSD-GKLVGIITRGNVVR  139 (152)
T ss_dssp             -CCBHHHHSEES--CCCEESSSBHH-HHHHHHHHSSCCEEEEECTT-SBEEEEEEHHHHHH
T ss_pred             ccccHHHhcCCC--ceEECCCCcHH-HHHHHHHHCCCCEEEEECCC-CcEEEEEEHHHHHH
Confidence            467899999974  67899999999 99999999999999999755 89999999999975

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=97.79  E-value=2.5e-05  Score=64.75  Aligned_cols=75  Identities=13%  Similarity=0.216  Sum_probs=58.0

Q ss_pred             cCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        23 ~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .|.++..+.......-...+.+|+++|++.  +.+++.++++. ++++.|.++++.++||++++ |+++|+|+.+||+.
T Consensus        47 ~Givt~~dl~~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dll~  121 (133)
T 2ef7_A           47 VGIITERDIVKAIGKGKSLETKAEEFMTAS--LITIREDSPIT-GALALMRQFNIRHLPVVDDK-GNLKGIISIRDITR  121 (133)
T ss_dssp             EEEEEHHHHHHHHHTTCCTTCBGGGTSEEC--CCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHH
T ss_pred             EEEEcHHHHHHHHhcCCCcccCHHHHcCCC--CEEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHH
Confidence            455666665322111112367899999864  77899999999 99999999999999999755 79999999999974

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1

Probab=97.76  E-value=1.9e-05  Score=71.43  Aligned_cols=84  Identities=11%  Similarity=-0.014  Sum_probs=67.0

Q ss_pred             HHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE---cCCcceeecCCccchhhhhcccccccCCCCCCCCCc
Q psy4847         244 LDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV---GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSA  320 (396)
Q Consensus       244 L~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~---G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~  320 (396)
                      +..|.........++...||+.|++++++++|++|+|++..   |++-...-.+|..+||     .       +      
T Consensus        16 ~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG-----~-------~------   77 (222)
T 1ft9_A           16 GETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC-----M-------H------   77 (222)
T ss_dssp             TTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-----S-------C------
T ss_pred             HHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-----C-------C------
Confidence            44444444455567778899999999999999999999964   7777888899999999     1       1      


Q ss_pred             ccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847         321 AQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK  367 (396)
Q Consensus       321 ~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al  367 (396)
                                            ..++++|+++|.++.|++..+...+
T Consensus        78 ----------------------~~~~~~A~~~~~v~~i~~~~~~~l~  102 (222)
T 1ft9_A           78 ----------------------SGCLVEATERTEVRFADIRTFEQKL  102 (222)
T ss_dssp             ----------------------SSCEEEESSCEEEEEECHHHHHHHH
T ss_pred             ----------------------CCEEEEEccceEEEEEeHHHHHHHH
Confidence                                  0138999999999999999987655

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=97.75  E-value=1.8e-05  Score=67.87  Aligned_cols=57  Identities=19%  Similarity=0.289  Sum_probs=51.7

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ..+.+|+++|++.  +.+++.++++. ++++.|.+++++++||++ + |+++|+|+.+||+.
T Consensus        75 ~~~~~v~~~m~~~--~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~  131 (157)
T 4fry_A           75 SKATRVEEIMTAK--VRYVEPSQSTD-ECMALMTEHRMRHLPVLD-G-GKLIGLISIGDLVK  131 (157)
T ss_dssp             SSSCBHHHHSBSS--CCCBCTTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHH
T ss_pred             ccccCHHHHcCCC--CcEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHH
Confidence            3578999999974  78899999999 999999999999999998 4 89999999999975

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=97.75  E-value=3.4e-05  Score=64.84  Aligned_cols=58  Identities=10%  Similarity=0.061  Sum_probs=51.4

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      ..+.+|+++|++   +.++++++++. +++..|.+++..++||++++ |+++|+|+.+||+..
T Consensus        67 ~~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~lvGiit~~Dil~~  124 (136)
T 3lfr_A           67 GDSDDVKKLLRP---ATFVPESKRLN-VLLREFRANHNHMAIVIDEY-GGVAGLVTIEDVLEQ  124 (136)
T ss_dssp             GGGCCGGGTCBC---CCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHTT
T ss_pred             CCCcCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHH
Confidence            356789999976   57899999999 99999999999999999765 799999999999853

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=97.74  E-value=4.5e-05  Score=63.45  Aligned_cols=72  Identities=15%  Similarity=0.287  Sum_probs=58.2

Q ss_pred             cCCCCHHHHHHHHHHh----cccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhh
Q psy4847          23 FNDLEKDEVNIISGAL----ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKD   98 (396)
Q Consensus        23 ~~~l~~~E~~~i~~al----el~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkD   98 (396)
                      .|.++..+.  +..++    ...+.+|+++|++.  +.+++.++++. ++++.|.+++..++||++ + |+++|+|+.+|
T Consensus        52 ~Givt~~dl--~~~~~~~~~~~~~~~v~~~m~~~--~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~d  124 (135)
T 2rc3_A           52 VGILTERDF--SRKSYLLDKPVKDTQVKEIMTRQ--VAYVDLNNTNE-DCMALITEMRVRHLPVLD-D-GKVIGLLSIGD  124 (135)
T ss_dssp             EEEEEHHHH--HHHGGGSSSCGGGSBGGGTSBCS--CCCBCTTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHH
T ss_pred             EEEEehHHH--HHHHHHcCCCcccCCHHHhccCC--CeEECCCCcHH-HHHHHHHHhCCCEEEEEe-C-CEEEEEEEHHH
Confidence            355665553  33332    34678999999874  78899999999 999999999999999998 4 89999999999


Q ss_pred             hcc
Q psy4847          99 LAL  101 (396)
Q Consensus        99 Ll~  101 (396)
                      |+.
T Consensus       125 ll~  127 (135)
T 2rc3_A          125 LVK  127 (135)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            974

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=97.72  E-value=8.9e-05  Score=64.96  Aligned_cols=71  Identities=11%  Similarity=0.159  Sum_probs=56.4

Q ss_pred             CCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          24 NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        24 ~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      |-++..+.  +.....-.+.+|+++| +  ++.++++++++. +++..|.+++..++||++++ |+++|+|+.+||+.
T Consensus        90 Givt~~dl--~~~~~~~~~~~v~~im-~--~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dil~  160 (172)
T 3lhh_A           90 GIISAKQL--LSESIAGERLELVDLV-K--NCNFVPNSLSGM-ELLEHFRTTGSQMVFVVDEY-GDLKGLVTLQDMMD  160 (172)
T ss_dssp             EEEEHHHH--HHHHHTTCCCCGGGGC-B--CCEEEETTCCHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHH
T ss_pred             EEEEHHHH--HHHHhhcCcccHHHHh-c--CCeEeCCCCCHH-HHHHHHHHcCCeEEEEEeCC-CCEEEEeeHHHHHH
Confidence            44555443  3333333477899999 3  368999999999 99999999999999999765 79999999999974

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=97.72  E-value=7e-05  Score=66.20  Aligned_cols=74  Identities=18%  Similarity=0.201  Sum_probs=59.2

Q ss_pred             CCCCHHHHHHHHHHh----cccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhh
Q psy4847          24 NDLEKDEVNIISGAL----ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL   99 (396)
Q Consensus        24 ~~l~~~E~~~i~~al----el~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDL   99 (396)
                      |.++..+.  +....    .....+|+++|++.  +.+++.++++. ++++.|.+++.+++||++++ ++++|+|+.+||
T Consensus        54 Givt~~dl--~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~Givt~~dl  127 (184)
T 1pvm_A           54 GLLSERSI--IKRFIPRNKKPDEVPIRLVMRKP--IPKVKSDYDVK-DVAAYLSENGLERCAVVDDP-GRVVGIVTLTDL  127 (184)
T ss_dssp             EEEEHHHH--HHHTGGGCCCGGGSBGGGTSBSS--CCEEETTCBHH-HHHHHHHHHTCSEEEEECTT-CCEEEEEEHHHH
T ss_pred             EEEeHHHH--HHHHhhcccCcccCCHHHHhCCC--CcEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHH
Confidence            45555543  33332    24678999999864  78999999999 99999999999999999865 799999999999


Q ss_pred             cccC
Q psy4847         100 ALVD  103 (396)
Q Consensus       100 l~~~  103 (396)
                      +..-
T Consensus       128 l~~~  131 (184)
T 1pvm_A          128 SRYL  131 (184)
T ss_dssp             TTTS
T ss_pred             HHHH
Confidence            8643

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=97.71  E-value=3.7e-05  Score=63.93  Aligned_cols=56  Identities=11%  Similarity=0.070  Sum_probs=49.7

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .+.+++++|++   ++++++++++. ++++.|.+++..++||++++ |+++|+|+.+|++.
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~pVvd~~-g~~~Giit~~Dil~  122 (129)
T 3jtf_A           67 PALDIRSLVRP---AVFIPEVKRLN-VLLREFRASRNHLAIVIDEH-GGISGLVTMEDVLE  122 (129)
T ss_dssp             TTSCGGGGCBC---CCEEETTCBHH-HHHHHHHTSSCCEEEEECC--CCEEEEEEHHHHHH
T ss_pred             CCcCHHHHhCC---CeEeCCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHH
Confidence            46789999975   57899999999 99999999999999999765 79999999999974

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=97.71  E-value=5.4e-05  Score=63.55  Aligned_cols=71  Identities=10%  Similarity=0.156  Sum_probs=56.5

Q ss_pred             CCCCHHHHHHHHHHhc--ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          24 NDLEKDEVNIISGALE--LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        24 ~~l~~~E~~~i~~ale--l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      |.++..+..  .....  ..+.+|+++|++.  +.+++.+ ++. ++++.|.+++..++||++++ |+++|+|+.+||+.
T Consensus        52 Givt~~dl~--~~~~~~~~~~~~v~~~m~~~--~~~v~~~-~l~-~a~~~m~~~~~~~l~Vvd~~-g~~~Giit~~dll~  124 (141)
T 2rih_A           52 AVVSERDIL--RAVAQRLDLDGPAMPIANSP--ITVLDTD-PVH-VAAEKMRRHNIRHVVVVNKN-GELVGVLSIRDLCF  124 (141)
T ss_dssp             EEEEHHHHH--HHHHTTCCTTSBSGGGCBCC--CEEETTS-BHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHS
T ss_pred             EEEEHHHHH--HHHhcCCCCCCCHHHHcCCC--CeEEcCC-CHH-HHHHHHHHcCCeEEEEEcCC-CcEEEEEEHHHHHH
Confidence            556655543  22111  2367899999864  7899999 999 99999999999999999854 89999999999975

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=97.70  E-value=2.3e-05  Score=68.27  Aligned_cols=58  Identities=17%  Similarity=0.368  Sum_probs=51.9

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ....+|+++|++.  +.+++.++++. ++++.|.++++.++||++++ |+++|+|+.+||+.
T Consensus        95 ~~~~~v~~~m~~~--~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit~~dil~  152 (180)
T 3sl7_A           95 TYGKVVGDLMTPS--PLVVRDSTNLE-DAARLLLETKFRRLPVVDAD-GKLIGILTRGNVVR  152 (180)
T ss_dssp             TTTCBHHHHSEES--CCCEETTSBHH-HHHHHHTTSTTCEEEEECTT-CBEEEEEEHHHHHH
T ss_pred             cccccHHHHhCCC--ceEeCCCCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHH
Confidence            4577899999965  67899999999 99999999999999999755 89999999999974

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=97.69  E-value=8.1e-05  Score=63.10  Aligned_cols=71  Identities=11%  Similarity=0.164  Sum_probs=56.1

Q ss_pred             CCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          24 NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        24 ~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      |-++..+...  ....-.+.+|+++|.   ++.++++++++. +++..|.+++..++||++++ |+++|+|+..||+.
T Consensus        71 Givt~~dl~~--~~~~~~~~~v~~~m~---~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-g~~~Giit~~dil~  141 (148)
T 3lv9_A           71 GFVHIRDLYN--QKINENKIELEEILR---DIIYISENLTID-KALERIRKEKLQLAIVVDEY-GGTSGVVTIEDILE  141 (148)
T ss_dssp             EEEEHHHHHH--HHHHHSCCCGGGTCB---CCEEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SSEEEEEEHHHHHH
T ss_pred             EEEEHHHHHH--HHhcCCCccHHHhcC---CCeEECCCCCHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHH
Confidence            4556555432  222222788999993   268899999999 99999999999999999765 79999999999974

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=97.67  E-value=4.2e-05  Score=63.27  Aligned_cols=56  Identities=13%  Similarity=0.172  Sum_probs=50.0

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .+.+|+++|++   +.++++++++. ++++.|.+++..++||++++ |+++|+|+.+||+.
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~Giit~~dll~  122 (127)
T 3nqr_A           67 EAFSMDKVLRT---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILE  122 (127)
T ss_dssp             CCCCHHHHCBC---CCEEETTCBHH-HHHHHHHHTTCCEEEEECTT-SCEEEEEEHHHHHH
T ss_pred             CCCCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHH
Confidence            56789999976   46899999999 99999999999999999765 79999999999975

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=97.67  E-value=7.6e-05  Score=63.85  Aligned_cols=72  Identities=10%  Similarity=0.060  Sum_probs=56.8

Q ss_pred             cCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        23 ~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .|-++..+...  ....-...+|+++| +  ++.+++.++++. +++..|.+++..++||++++ |+++|+|+.+||+.
T Consensus        68 vGivt~~dl~~--~~~~~~~~~v~~~m-~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~~vGivt~~dil~  139 (153)
T 3oco_A           68 IGYAYNYDIVR--QARIDDKAKISTIM-R--DIVSVPENMKVP-DVMEEMSAHRVPMAIVIDEY-GGTSGIITDKDVYE  139 (153)
T ss_dssp             EEEEEHHHHHH--HHHHHTTSBGGGTC-B--CCEEEETTSBHH-HHHHHHHHTTCSCEEEECTT-SCEEEEECHHHHHH
T ss_pred             EEEEEHHHHHh--HHhcCCCCcHHHHh-C--CCeEECCCCCHH-HHHHHHHHcCCcEEEEEeCC-CCEEEEeeHHHHHH
Confidence            35566555432  22222378899999 3  378999999999 99999999999999999765 89999999999974

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=97.66  E-value=6.1e-05  Score=65.28  Aligned_cols=75  Identities=15%  Similarity=0.180  Sum_probs=59.6

Q ss_pred             cCCCCHHHHHH--HHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847          23 FNDLEKDEVNI--ISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA  100 (396)
Q Consensus        23 ~~~l~~~E~~~--i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl  100 (396)
                      .|.++..+...  ..+-....+.+|+++|++.  +.+++.++++. ++++.|.+++++++||+++  |+++|+|+.+||+
T Consensus        71 ~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~--~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~~~Giit~~dil  145 (165)
T 3fhm_A           71 LGIFTERDLVKAVAGQGAASLQQSVSVAMTKN--VVRCQHNSTTD-QLMEIMTGGRFRHVPVEEN--GRLAGIISIGDVV  145 (165)
T ss_dssp             EEEEEHHHHHHHHHHHGGGGGTSBGGGTSBSS--CCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHH
T ss_pred             EEEEEHHHHHHHHHhcCCccccCCHHHHhcCC--CeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHH
Confidence            45666665421  1221145678999999854  78899999999 9999999999999999987  8999999999997


Q ss_pred             cc
Q psy4847         101 LV  102 (396)
Q Consensus       101 ~~  102 (396)
                      ..
T Consensus       146 ~~  147 (165)
T 3fhm_A          146 KA  147 (165)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=97.66  E-value=2.8e-05  Score=66.75  Aligned_cols=57  Identities=19%  Similarity=0.338  Sum_probs=51.3

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ..+.+|+++|++   +.+++.++++. ++++.|.++++.++||++++ ++++|+|+.+||+.
T Consensus        93 ~~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit~~dll~  149 (157)
T 1o50_A           93 LIAKNASEIMLD---PVYVHMDTPLE-EALKLMIDNNIQEMPVVDEK-GEIVGDLNSLEILL  149 (157)
T ss_dssp             CSSCBHHHHCBC---CCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHH
T ss_pred             HcCCcHHHHcCC---CeEECCCCCHH-HHHHHHHHCCCcEEEEEcCC-CEEEEEEEHHHHHH
Confidence            467889999996   67899999999 99999999999999999754 79999999999974

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=97.65  E-value=3.9e-05  Score=63.60  Aligned_cols=58  Identities=17%  Similarity=0.319  Sum_probs=51.8

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      ..+.+|+++|++.  +.+++.++++. ++++.|.+++..++||+++  |+++|+|+.+||+..
T Consensus        71 ~~~~~v~~~m~~~--~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~--g~~~Giit~~dil~~  128 (133)
T 1y5h_A           71 PNTATAGELARDS--IYYVDANASIQ-EMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARH  128 (133)
T ss_dssp             TTTSBHHHHHTTC--CCCEETTCCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHT
T ss_pred             ccccCHHHHhcCC--CEEECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHH
Confidence            3568899999864  78899999999 9999999999999999986  799999999999753

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=97.63  E-value=4.4e-05  Score=63.82  Aligned_cols=76  Identities=20%  Similarity=0.210  Sum_probs=56.3

Q ss_pred             CCCCHHHHHHHHH--HhcccccccccccccCC----CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhh
Q psy4847          24 NDLEKDEVNIISG--ALELRRKIVGDVMTKLE----DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIK   97 (396)
Q Consensus        24 ~~l~~~E~~~i~~--alel~~~tV~dIMtp~~----dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vk   97 (396)
                      |-++..+......  .+...+.+|+++|++..    ++.+++.++++. ++++.|.++++.++||++++ |+++|+|+.+
T Consensus        56 Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-g~~~Giit~~  133 (144)
T 2nyc_A           56 NVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLS-TIMDNIRKARVHRFFVVDDV-GRLVGVLTLS  133 (144)
T ss_dssp             EEEEHHHHHHHHHTC----CCSBHHHHHHHCC------CEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHH
T ss_pred             EEEcHHHHHHHhcccccccCCccHHHHHhcCccccCCCeEECCCCcHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEHH
Confidence            5566655432111  11234678999998642    478999999999 99999999999999999765 8999999999


Q ss_pred             hhcc
Q psy4847          98 DLAL  101 (396)
Q Consensus        98 DLl~  101 (396)
                      ||+.
T Consensus       134 dil~  137 (144)
T 2nyc_A          134 DILK  137 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9974

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=97.63  E-value=3.5e-05  Score=63.76  Aligned_cols=55  Identities=11%  Similarity=0.110  Sum_probs=49.5

Q ss_pred             cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .+|+++|++.  +.+++.++++. ++++.|.++++.++||++++ |+++|+|+.+||+.
T Consensus        68 ~~v~~~m~~~--~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~-g~~~Giit~~dll~  122 (128)
T 3gby_A           68 EKLGEELLET--VRSYRPGEQLF-DNLISVAAAKCSVVPLADED-GRYEGVVSRKRILG  122 (128)
T ss_dssp             CBCCGGGCBC--CCCBCTTSBGG-GSHHHHHHCSSSEEEEECTT-CBEEEEEEHHHHHH
T ss_pred             CcHHHHccCC--CcEECCCCCHH-HHHHHHHhCCCcEEEEECCC-CCEEEEEEHHHHHH
Confidence            6699999864  77899999999 99999999999999999755 89999999999974

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=97.62  E-value=5.3e-05  Score=65.23  Aligned_cols=55  Identities=7%  Similarity=0.091  Sum_probs=49.6

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA  100 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl  100 (396)
                      .+.+|+++|+|   +++++.++++. +++..|.+++..++||++++ |+++|+|+.+||+
T Consensus       101 ~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~~~Vvd~~-g~~~Givt~~Dil  155 (156)
T 3oi8_A          101 EQFHLKSILRP---AVFVPEGKSLT-ALLKEFREQRNHMAIVIDEY-GGTSGLVTFEDII  155 (156)
T ss_dssp             GGCCHHHHCBC---CCEEETTSBHH-HHHHHHHHTTCCEEEEECTT-SSEEEEEEHHHHC
T ss_pred             CcccHHHHcCC---CEEECCCCCHH-HHHHHHHhcCCeEEEEECCC-CCEEEEEEHHHhc
Confidence            46789999976   57899999999 99999999999999999765 8999999999986

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=97.57  E-value=7.7e-05  Score=61.92  Aligned_cols=73  Identities=12%  Similarity=0.193  Sum_probs=57.2

Q ss_pred             cCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        23 ~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .|-++..+....... ...+.+|+++|++   +.++++++++. ++++.|.+++..++||++++ |+++|+|+..|++.
T Consensus        53 ~Givt~~dl~~~~~~-~~~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~~vGivt~~dil~  125 (130)
T 3i8n_A           53 IGFVHRLELFKMQQS-GSGQKQLGAVMRP---IQVVLNNTALP-KVFDQMMTHRLQLALVVDEY-GTVLGLVTLEDIFE  125 (130)
T ss_dssp             EEECCHHHHHHHHHT-TTTTSBHHHHSEE---CCEEETTSCHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHH
T ss_pred             EEEEEHHHHHHHHhc-CCCcCCHHHHhcC---CcCcCCCCcHH-HHHHHHHHcCCeEEEEEcCC-CCEEEEEEHHHHHH
Confidence            356676654422111 1246789999965   57899999999 99999999999999999765 79999999999974

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=97.56  E-value=9.8e-05  Score=56.01  Aligned_cols=47  Identities=23%  Similarity=0.345  Sum_probs=41.2

Q ss_pred             ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         121 CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       121 v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      +++|.+++++.+|++.|.++ +...++|+        | .|+++||||..||+..++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~-~i~~~~V~--------d-~~~lvGIvT~~Di~~~~~   48 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRN-KAGSAVVM--------E-GDEILGVVTERDILDKVV   48 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHT-TCSEEEEE--------E-TTEEEEEEEHHHHHHHTT
T ss_pred             CEEECCCCcHHHHHHHHHHc-CCCEEEEE--------E-CCEEEEEEEHHHHHHHHH
Confidence            57899999999999999995 77777777        5 489999999999998876

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=97.56  E-value=6.5e-05  Score=64.85  Aligned_cols=57  Identities=21%  Similarity=0.173  Sum_probs=51.4

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ....+|+++|++  ++.++++++++. +++..|.+++..++||+++  |+++|+|+.+||+.
T Consensus        75 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~lvGiit~~dil~  131 (160)
T 2o16_A           75 AFETPLFEVMHT--DVTSVAPQAGLK-ESAIYMQKHKIGCLPVVAK--DVLVGIITDSDFVT  131 (160)
T ss_dssp             -CCCBHHHHSCS--CEEEBCTTSBHH-HHHHHHHHTTCSCEEEEET--TEEEEEECHHHHHH
T ss_pred             hcccCHHHHhcC--CCeEECCCCCHH-HHHHHHHHhCCCEEEEEEC--CEEEEEEEHHHHHH
Confidence            357889999996  489999999999 9999999999999999976  79999999999975

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}

Probab=97.53  E-value=0.00016  Score=77.72  Aligned_cols=96  Identities=15%  Similarity=0.166  Sum_probs=78.0

Q ss_pred             cHHHHHHHHhcCC-CCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCC
Q psy4847         240 VGSLLDRITQKGT-SQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNS  318 (396)
Q Consensus       240 ~e~vL~~Ll~~~~-v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~  318 (396)
                      ++..+..|..... .....++..||+.|++++++.+|++|+|++...........+|..+||+.++...  .   +    
T Consensus        44 s~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g~~il~~l~~Gd~fGe~al~~~--~---~----  114 (694)
T 3cf6_E           44 STTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVND--A---P----  114 (694)
T ss_dssp             CHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETTTEEEEEEETTCEECHHHHHHT--C---B----
T ss_pred             CHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeCCEEEEEeCCCCEeehHHHhCC--C---C----
Confidence            5677888887765 4567788899999999999999999999998743468889999999999888751  0   0    


Q ss_pred             CcccccCCCcccccccccCCcccccCcEEEEcC-CeEEEEEeHHHHHHHHH
Q psy4847         319 SAAQAYGGSLQSVNLDSILRYTFVPDYSVRATT-EMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       319 ~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~-d~~~~~Itr~~Y~~al~  368 (396)
                                              -.++|+|.+ +|+++.|++..|...+.
T Consensus       115 ------------------------~~~tv~A~edd~~ll~I~~~~f~~ll~  141 (694)
T 3cf6_E          115 ------------------------RAASIVLREDNCHFLRVDKEDFNRILR  141 (694)
T ss_dssp             ------------------------CSSEEEECSSSEEEEEEEHHHHHHHTT
T ss_pred             ------------------------ceEEEEEeeCceEEEEEeHHHHHHHHH
Confidence                                    124999999 59999999999987654

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=97.53  E-value=5.2e-05  Score=63.09  Aligned_cols=58  Identities=28%  Similarity=0.384  Sum_probs=50.4

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcC-----CcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSG-----YSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g-----~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ..+.+|+++|++.  +.+++.++++. ++++.|.+++     ++++||++++ |+++|+|+.+||+.
T Consensus        70 ~~~~~v~~~m~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dll~  132 (138)
T 2p9m_A           70 TLETTIGDVMTKD--VITIHEDASIL-EAIKKMDISGKKEEIINQLPVVDKN-NKLVGIISDGDIIR  132 (138)
T ss_dssp             CSSCBHHHHSCSS--CCCEETTSBHH-HHHHHHTCC-----CCCEEEEECTT-SBEEEEEEHHHHHH
T ss_pred             cCCcCHHHHhCCC--cEEECCCCCHH-HHHHHHHhcCCccccccEEEEECCC-CeEEEEEEHHHHHH
Confidence            4577999999864  78899999999 9999999999     9999999754 79999999999974

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=97.52  E-value=9.1e-05  Score=67.43  Aligned_cols=59  Identities=12%  Similarity=0.161  Sum_probs=52.2

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      ..+.+|+++|++.  +++++.++++. ++++.|.++++..+||++++ |+++|+|+..|++..
T Consensus       113 ~~~~~v~~im~~~--~~~v~~~~~l~-~a~~~m~~~~~~~lpVVD~~-g~lvGiIT~~Dil~~  171 (205)
T 3kxr_A          113 EPHEPLISLLSED--SRALTANTTLL-DAAEAIEHSREIELPVIDDA-GELIGRVTLRAATAL  171 (205)
T ss_dssp             CTTSBGGGGCCSS--CCCEETTSCHH-HHHHHHHTSSCSEEEEECTT-SBEEEEEEHHHHHHH
T ss_pred             CCcchHHHHhcCC--CeEECCCCCHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHH
Confidence            3567899999854  78899999999 99999999999999999865 899999999999753

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=97.52  E-value=0.0001  Score=62.34  Aligned_cols=56  Identities=11%  Similarity=0.159  Sum_probs=49.5

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ....+|+++|++.  +.+++.++++. ++++.|.++++  +||++++ |+++|+|+.+||+.
T Consensus        84 ~~~~~v~~~m~~~--~~~v~~~~~l~-~a~~~~~~~~~--l~Vvd~~-g~~~Giit~~dil~  139 (150)
T 3lqn_A           84 LEEMKVEQVMKQD--IPVLKLEDSFA-KALEMTIDHPF--ICAVNED-GYFEGILTRRAILK  139 (150)
T ss_dssp             GGGCBGGGTCBSS--CCEEETTCBHH-HHHHHHHHCSE--EEEECTT-CBEEEEEEHHHHHH
T ss_pred             HhcCCHHHHhcCC--CceeCCCCCHH-HHHHHHHhCCE--EEEECCC-CcEEEEEEHHHHHH
Confidence            3578999999954  78999999999 99999999987  9999755 89999999999975

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=97.52  E-value=7.3e-05  Score=62.37  Aligned_cols=56  Identities=11%  Similarity=0.184  Sum_probs=49.3

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ...+|+++|.+   +.++++++++. ++++.|.+++..++||++++ |+++|+|+.+|++.
T Consensus        68 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~lvGiit~~Dil~  123 (130)
T 3hf7_A           68 TKEIMLRAADE---IYFVPEGTPLS-TQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILE  123 (130)
T ss_dssp             CHHHHHHHSBC---CCEEETTCBHH-HHHHHHHHHCCCEEEEECTT-SCEEEEEEHHHHHH
T ss_pred             chhhHHHhccC---CeEeCCCCcHH-HHHHHHHhcCCeEEEEEcCC-CCEEEEeeHHHHHH
Confidence            35689999954   57899999999 99999999999999999765 89999999999974

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=97.49  E-value=0.00018  Score=61.10  Aligned_cols=57  Identities=16%  Similarity=0.091  Sum_probs=48.1

Q ss_pred             chhhhhhhhcC--CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         109 PLKTLCQFYQN--SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       109 ~l~~v~~~~~~--~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      +++++|   .+  +++++.+++++.++++.|.+. +.+.++|+        |+.|+++|+||..||+..+.
T Consensus        29 ~v~dim---~~~~~~~~v~~~~~~~~a~~~m~~~-~~~~~~Vv--------d~~~~~~Givt~~dl~~~~~   87 (149)
T 3k2v_A           29 RVNDIM---HTGDEIPHVGLQATLRDALLEITRK-NLGMTAIC--------DDDMNIIGIFTDGDLRRVFD   87 (149)
T ss_dssp             BGGGTS---BCGGGSCEECTTCBHHHHHHHHHHH-TSSEEEEE--------CTTCBEEEEEEHHHHHHHHC
T ss_pred             CHHHHh---cCCCCCeEECCCCcHHHHHHHHHhC-CCcEEEEE--------CCCCcEEEEecHHHHHHHHh
Confidence            445554   56  789999999999999999985 66777777        87899999999999998875

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=97.46  E-value=0.00013  Score=63.67  Aligned_cols=57  Identities=11%  Similarity=0.084  Sum_probs=51.2

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ....+|+++|++.  +.+++.++++. +++..|.++++.++||++ + |+++|+|+.+||+.
T Consensus       105 ~~~~~v~~im~~~--~~~v~~~~~l~-~a~~~m~~~~~~~l~Vvd-~-g~~vGiit~~dll~  161 (185)
T 2j9l_A          105 PPTLKLRNILDLS--PFTVTDLTPME-IVVDIFRKLGLRQCLVTH-N-GRLLGIITKKDVLK  161 (185)
T ss_dssp             CCCEECGGGEESS--CCEEETTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHH
T ss_pred             ccCccHHHhhCcC--CeEeCCCCCHH-HHHHHHHhCCCcEEEEEE-C-CEEEEEEEHHHHHH
Confidence            4567899999864  78999999999 999999999999999998 3 89999999999975

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=97.45  E-value=5.6e-05  Score=78.30  Aligned_cols=102  Identities=16%  Similarity=0.165  Sum_probs=17.9

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCC
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNS  120 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~  120 (396)
                      .+.+|+++|++..++++++.++++. ++++.|.+++..++||++++ ++++|+|+.+||+....... ..++...-+ ..
T Consensus       159 ~~~~V~diM~~~~~~~tv~~~~sl~-ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~~~~~~-~~~d~~~~l-~v  234 (503)
T 1me8_A          159 TETKVSDMMTPFSKLVTAHQDTKLS-EANKIIWEKKLNALPIIDDD-QHLRYIVFRKDYDRSQVCHN-ELVDSQKRY-LV  234 (503)
T ss_dssp             -----------------------------------------------------------------CC-CCBCTTSCB-CC
T ss_pred             ccCcHHHHhCCCCCCEEEcCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEecHHHHhhhccc-chhcccccc-cc
Confidence            3567999999876789999999999 99999999999999999865 89999999999985432211 112221100 11


Q ss_pred             ceEEcCCCCHHHHHHHHHhcCCceEEEE
Q psy4847         121 CYFVFEDTTLDVLLKQFKEGIKGHMAFV  148 (396)
Q Consensus       121 v~~V~~dt~L~~~L~~f~~~~~~h~avV  148 (396)
                      ...+.. ....+.++.|.+. ..++.+|
T Consensus       235 ~a~v~~-~~~~e~~~~l~e~-gv~~l~V  260 (503)
T 1me8_A          235 GAGINT-RDFRERVPALVEA-GADVLCI  260 (503)
T ss_dssp             EEEECS-SSHHHHHHHHHHH-TCSEEEE
T ss_pred             ccccCc-hhHHHHHHHHHhh-hccceEE
Confidence            134455 5666667888775 5676555

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=97.41  E-value=0.00024  Score=59.14  Aligned_cols=57  Identities=21%  Similarity=0.169  Sum_probs=47.4

Q ss_pred             chhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         109 PLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       109 ~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      +++++|   .++++++++++++.++++.|.+. +.+.++|+        |+.|+++|+||..|++..++
T Consensus         8 ~v~~im---~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vv--------d~~~~~~Givt~~dl~~~~~   64 (138)
T 2yzi_A            8 PIKVYM---TKKLLGVKPSTSVQEASRLMMEF-DVGSLVVI--------NDDGNVVGFFTKSDIIRRVI   64 (138)
T ss_dssp             BGGGTC---BCCCCEECTTSBHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHHHHTT
T ss_pred             hHHHHh---cCCCeEECCCCcHHHHHHHHHHc-CCCEEEEE--------cCCCcEEEEEeHHHHHHHHH
Confidence            456665   47889999999999999999985 56677777        77799999999999986554

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=97.39  E-value=0.00017  Score=61.39  Aligned_cols=55  Identities=20%  Similarity=0.248  Sum_probs=49.1

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ...+|+++|++.  +.+++.++++. +++..|.++++  +||++++ |+++|+|+.+||+.
T Consensus        81 ~~~~v~~~m~~~--~~~v~~~~~l~-~a~~~m~~~~~--l~Vvd~~-g~~~Giit~~dil~  135 (157)
T 2emq_A           81 ETMKVEEVMNRN--IPRLRLDDSLM-KAVGLIVNHPF--VCVENDD-GYFAGIFTRREVLK  135 (157)
T ss_dssp             GTCBGGGTCBCC--CCEEETTSBHH-HHHHHHHHSSE--EEEECSS-SSEEEEEEHHHHHH
T ss_pred             cCCcHHHHhCCC--CceecCCCcHH-HHHHHHhhCCE--EEEEcCC-CeEEEEEEHHHHHH
Confidence            578999999864  78999999999 99999999987  9999765 79999999999974

>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}

Probab=97.37  E-value=7.8e-05  Score=66.37  Aligned_cols=76  Identities=16%  Similarity=0.096  Sum_probs=60.8

Q ss_pred             CCCCCCccccccccCccc--ceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCCCCCcccccC
Q psy4847         252 TSQQKPTFKSLKKRNKPV--DYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYG  325 (396)
Q Consensus       252 ~v~~~~~~~~LY~~g~~~--d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~  325 (396)
                      ......+...||+.|+++  +++++|++|.|.+..    |++-...-.||..+||+ ++...     .+           
T Consensus         6 ~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~-----~~-----------   68 (202)
T 2zcw_A            6 ETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFG-----QE-----------   68 (202)
T ss_dssp             CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHT-----CC-----------
T ss_pred             eEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCC-----CC-----------
Confidence            344456777899999999  999999999999986    78888899999999999 54431     00           


Q ss_pred             CCcccccccccCCcccccCcEEEEcCCeEEEEEeHHH
Q psy4847         326 GSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSF  362 (396)
Q Consensus       326 ~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~  362 (396)
                                       ..++++|+++|.++.| +..
T Consensus        69 -----------------~~~~~~A~~~~~v~~i-~~~   87 (202)
T 2zcw_A           69 -----------------RIYFAEAATDVRLEPL-PEN   87 (202)
T ss_dssp             -----------------BCSEEEESSCEEEEEC-CSS
T ss_pred             -----------------cceEEEEcccEEEEEE-hHh
Confidence                             1248999999999999 743

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=97.29  E-value=0.00028  Score=61.17  Aligned_cols=60  Identities=13%  Similarity=0.040  Sum_probs=47.6

Q ss_pred             hhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhc
Q psy4847         110 LKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQA  179 (396)
Q Consensus       110 l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~  179 (396)
                      ++++|.+ ...+.+|.+++++.+|+..|.+. +..-++|+        |+.|+++|+||..|++..+...
T Consensus        17 ~~~iM~P-~~~v~~v~~~~t~~~a~~~m~~~-~~s~~pVv--------d~~~~lvGiit~~Di~~~~~~~   76 (156)
T 3k6e_A           17 EETFLTP-AKNLAVLIDTHNADHATLLLSQM-TYTRVPVV--------TDEKQFVGTIGLRDIMAYQMEH   76 (156)
T ss_dssp             GGGGEEE-TTSSCCEETTSBHHHHHHHHTTS-SSSEEEEE--------CC-CBEEEEEEHHHHHHHHHHH
T ss_pred             HHHhCcc-hhHeEEECCcCCHHHHHHHHHHc-CCcEEEEE--------cCCCcEEEEEEecchhhhhhhc
Confidence            4445432 24688999999999999999995 66666677        8889999999999999998743

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=97.25  E-value=0.00048  Score=58.76  Aligned_cols=58  Identities=14%  Similarity=0.150  Sum_probs=48.8

Q ss_pred             cchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCC--CCceeeeecHHHHHHHHH
Q psy4847         108 TPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDP--FYETVGLITLEDVIEELI  177 (396)
Q Consensus       108 ~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De--~g~~vGIVTleDIiEeli  177 (396)
                      .+++++|   .++++++.+++++.++++.|.+. +.+.++|+        |+  .|+++|+||..||+..+.
T Consensus        13 ~~v~dim---~~~~~~v~~~~~~~~a~~~~~~~-~~~~~pVv--------d~~~~~~~~Givt~~dl~~~~~   72 (164)
T 2pfi_A           13 VRVEHFM---NHSITTLAKDTPLEEVVKVVTST-DVTEYPLV--------ESTESQILVGIVQRAQLVQALQ   72 (164)
T ss_dssp             CBHHHHC---BCCCCCEETTCBHHHHHHHHHTC-CCSEEEEE--------SCTTTCBEEEEEEHHHHHHHHH
T ss_pred             CCHHHHc---CCCCeEECCCCcHHHHHHHHHhC-CCCceeEE--------ecCCCCEEEEEEEHHHHHHHHH
Confidence            4566665   47888999999999999999985 67777777        64  689999999999998876

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=97.24  E-value=0.00025  Score=67.20  Aligned_cols=59  Identities=19%  Similarity=0.291  Sum_probs=52.5

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      ..+.+|+++|++.  +.+++.++++. ++++.|.++++..+||++++ |+++|+|+..|++..
T Consensus       196 ~~~~~v~~im~~~--~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~lvGivT~~Dil~~  254 (278)
T 2yvy_A          196 DPRTRVAEIMNPK--VVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDV  254 (278)
T ss_dssp             CTTCBSTTTSBSS--CCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHH
T ss_pred             CCCCcHHHHhCCC--CeEEeCCCCHH-HHHHHHHhcCCCEEEEEeCC-CeEEEEEEHHHHHHH
Confidence            3578899999854  78999999999 99999999999999999765 899999999999854

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=97.22  E-value=0.00034  Score=59.89  Aligned_cols=58  Identities=17%  Similarity=0.181  Sum_probs=48.4

Q ss_pred             cchhhhhhhhcC--CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         108 TPLKTLCQFYQN--SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       108 ~~l~~v~~~~~~--~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      .+++++|   .+  ++++|.+++++.++++.|.+. +...++|+        |+.|+++|+||..||+..+.
T Consensus        14 ~~v~~im---~~~~~~~~v~~~~~l~~a~~~m~~~-~~~~~pVv--------d~~~~lvGivt~~dl~~~~~   73 (159)
T 1yav_A           14 ATVGQFM---IEADKVAHVQVGNNLEHALLVLTKT-GYTAIPVL--------DPSYRLHGLIGTNMIMNSIF   73 (159)
T ss_dssp             CBHHHHS---EEGGGSCCEETTCBHHHHHHHHHHH-CCSEEEEE--------CTTCBEEEEEEHHHHHHHHB
T ss_pred             hhHHHHh---CCccceEEECCCCcHHHHHHHHHhC-CCcEEEEE--------CCCCCEEEEeEHHHHHHHhh
Confidence            3566665   35  688999999999999999985 66677777        87889999999999999876

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=97.19  E-value=5.4e-05  Score=74.24  Aligned_cols=91  Identities=21%  Similarity=0.296  Sum_probs=0.0

Q ss_pred             HHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCCcc
Q psy4847         242 SLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAA  321 (396)
Q Consensus       242 ~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~  321 (396)
                      ..+..|..+......+++..||++|++++.+.+|++|+|++....   ....+|.++||+.++....     +       
T Consensus       242 ~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~---~~~l~~G~~fGe~~~l~~~-----~-------  306 (355)
T 3beh_A          242 AVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---PVELGPGAFFGEMALISGE-----P-------  306 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC---eeEECCCCEEeehHHhCCC-----C-------
Confidence            334444444445555667789999999999999999999998765   3578999999999876510     0       


Q ss_pred             cccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         322 QAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       322 ~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                                           ..++++|.++|+.+.|+|+.+.+.+.
T Consensus       307 ---------------------~~~~~~A~~~~~l~~i~~~~f~~ll~  332 (355)
T 3beh_A          307 ---------------------RSATVSAATTVSLLSLHSADFQMLCS  332 (355)
T ss_dssp             -----------------------------------------------
T ss_pred             ---------------------cceEEEECccEEEEEEeHHHHHHHHH
Confidence                                 12589999999999999999887554

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=97.13  E-value=0.00063  Score=70.61  Aligned_cols=104  Identities=15%  Similarity=0.067  Sum_probs=70.1

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcC
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQN  119 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~  119 (396)
                      -.+.+|+++|++ .++++++.+.++. ++++.|.+++..++||++++ ++++|+|+.+|++...... ...++...- ..
T Consensus       172 ~~~~~V~~vM~~-~~~vtv~~~~~l~-eal~~m~~~~i~~lpVVDe~-g~l~GiIT~~Dil~~~~~p-~a~~D~~~r-l~  246 (511)
T 3usb_A          172 DYSIKISDVMTK-EQLITAPVGTTLS-EAEKILQKYKIEKLPLVDNN-GVLQGLITIKDIEKVIEFP-NSAKDKQGR-LL  246 (511)
T ss_dssp             CSSSBHHHHCCC-CCCCCEETTCCHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHHHCT-TCCBCTTSC-BC
T ss_pred             cCCCcHHHhccc-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEeCC-CCEeeeccHHHHHHhhhcc-cchhhhccc-ee
Confidence            346789999997 4588999999999 99999999999999999876 8999999999998532111 112222210 01


Q ss_pred             CceEEcCCCCHHHHHHHHHhcCCceEEEEE
Q psy4847         120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVH  149 (396)
Q Consensus       120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~  149 (396)
                      ....+-......+.+..+.+. ....++|-
T Consensus       247 V~aavg~~~d~~era~aLvea-Gvd~I~Id  275 (511)
T 3usb_A          247 VGAAVGVTADAMTRIDALVKA-SVDAIVLD  275 (511)
T ss_dssp             CEEEECSSTTHHHHHHHHHHT-TCSEEEEE
T ss_pred             eeeeeeeccchHHHHHHHHhh-ccceEEec
Confidence            112333333444555566664 56666664

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=97.13  E-value=0.00032  Score=67.06  Aligned_cols=59  Identities=12%  Similarity=0.251  Sum_probs=52.3

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      ..+.+|+++|++.  +.+++.++++. +++..|.++++.++||++++ |+++|+|+..|++..
T Consensus       198 ~~~~~v~~im~~~--~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIT~~Dil~~  256 (286)
T 2oux_A          198 DDDTLIADILNER--VISVHVGDDQE-DVAQTIRDYDFLAVPVTDYD-DHLLGIVTVDDIIDV  256 (286)
T ss_dssp             CTTSBHHHHSBSC--CCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHH
T ss_pred             CCCCcHHHHcCCC--CeeecCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHHH
Confidence            3577899999864  78899999999 99999999999999999765 899999999999753

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=96.94  E-value=0.00097  Score=58.73  Aligned_cols=70  Identities=7%  Similarity=-0.051  Sum_probs=53.3

Q ss_pred             CCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          24 NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        24 ~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      |-++..+..  .....-...+|+ +|.+   +.+++.++++. +++..|.+++..++||++++ |+++|+|+.+||+.
T Consensus        84 Givt~~Dl~--~~~~~~~~~~v~-~~~~---~~~v~~~~~l~-~al~~m~~~~~~~~~Vvde~-g~lvGiIT~~Dil~  153 (173)
T 3ocm_A           84 GIGRAKDLV--ADLITEGRVRRN-RLRD---PIIVHESIGIL-RLMDTLKRSRGQLVLVADEF-GAIEGLVTPIDVFE  153 (173)
T ss_dssp             EEEEHHHHH--HHHHHHSSCCGG-GSBC---CCEECGGGCHH-HHHHHHHHSTTCCEEEECTT-CCEEEEECHHHHHH
T ss_pred             EEEEHHHHH--HHHhcCCcchhH-hcCC---CeEECCCCcHH-HHHHHHHHcCCeEEEEEeCC-CCEEEEEeHHHHHH
Confidence            455554433  222222466788 5543   67899999999 99999999999999999765 89999999999974

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=96.89  E-value=0.0011  Score=70.56  Aligned_cols=56  Identities=14%  Similarity=-0.036  Sum_probs=48.5

Q ss_pred             ccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC
Q psy4847          44 IVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP  104 (396)
Q Consensus        44 tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~  104 (396)
                      +|+++|++.  ++++++++++. ++.+.|.+++..++||++ + |+++|+|+.+||+..-.
T Consensus       569 ~v~~iMt~~--pitV~~~~~l~-ea~~~M~~~~i~~lpVve-~-G~lvGIVT~~Dll~~~~  624 (632)
T 3org_A          569 SLVVPCDVS--PIVVTSYSLVR-QLHFLFVMLMPSMIYVTE-R-GKLVGIVEREDVAYGYS  624 (632)
T ss_dssp             --CCSCCCC--CCEEETTCBHH-HHHHHHHHTCCSEEEEEE-T-TEEEEEEEGGGTEECCC
T ss_pred             ccchhhcCC--CceecCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEehhhHHHHHh
Confidence            489999965  78999999999 999999999999999994 3 79999999999987543

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=96.78  E-value=0.0011  Score=68.03  Aligned_cols=59  Identities=19%  Similarity=0.306  Sum_probs=52.5

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      -.+.+|+++|++  ++++++.++++. ++.+.|.+++...+||++++ |+++|+|+.+|++..
T Consensus       216 ~~~~~v~dim~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVDe~-g~lvGiIT~~Dil~~  274 (473)
T 2zy9_A          216 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDV  274 (473)
T ss_dssp             CTTSBGGGTSBS--SCCCEESSSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHH
T ss_pred             CCCCcHHHHhCC--CCeEEeCCCcHH-HHHHHHHhcCCcEEEEEcCC-CEEEEEEehHhhHHH
Confidence            357899999985  378999999999 99999999999999999865 899999999999753

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=96.76  E-value=0.0018  Score=60.96  Aligned_cols=58  Identities=16%  Similarity=0.081  Sum_probs=47.4

Q ss_pred             cchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCC--CCceeeeecHHHHHHHHH
Q psy4847         108 TPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDP--FYETVGLITLEDVIEELI  177 (396)
Q Consensus       108 ~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De--~g~~vGIVTleDIiEeli  177 (396)
                      ..++++|   .+++.+|.+++++.++++.|.+. +.+-.+|+        |+  .|.++||||..||+..+.
T Consensus        13 ~~v~diM---t~~vvtv~~~~tv~~~~~lm~~~-~~~~~PVV--------d~~~~~~LvGiIt~~dl~~~l~   72 (250)
T 2d4z_A           13 IQVGDIM---VRDVTSIASTSTYGDLLHVLRQT-KLKFFPFV--------DTPDTNTLLGSIDRTEVEGLLQ   72 (250)
T ss_dssp             CBTTSSS---BSSCCCEETTCBHHHHHHHHHHC-CCSEEEEE--------SCTTTCBEEEEEEHHHHHHHHH
T ss_pred             CChHHhc---CCCCeEECCCCCHHHHHHHHHhc-CCCEEEEE--------ecCCCCeEEEEEEHHHHHHHHH
Confidence            3556665   58999999999999999999985 56666666        43  468999999999999876

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=96.55  E-value=0.00037  Score=71.95  Aligned_cols=60  Identities=12%  Similarity=0.208  Sum_probs=0.0

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      .+.+|+++|+|..++++++.+.++. ++++.|.+++...+||++++ ++++|+|+.+|++..
T Consensus       145 ~~~~V~~vMtp~~~~vtv~~~~~l~-ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~  204 (490)
T 4avf_A          145 AGDTVAAIMTPKDKLVTAREGTPLE-EMKAKLYENRIEKMLVVDEN-FYLRGLVTFRDIEKA  204 (490)
T ss_dssp             --------------------------------------------------------------
T ss_pred             cCCcHHHHhccCCCCEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHhhhh
Confidence            3567999999755688999999999 99999999999999999865 899999999999864

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=96.37  E-value=0.00049  Score=71.21  Aligned_cols=60  Identities=25%  Similarity=0.206  Sum_probs=43.0

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      .+.+|+++|+|..++++++.+.++. ++++.|.+++...+||+|++ ++++|+|+.+|++..
T Consensus       147 ~~~~v~diM~p~~~~vtv~~~~~l~-ea~~~m~~~~i~~lpVVDe~-G~l~GiIT~~DIl~~  206 (496)
T 4fxs_A          147 LTKSVAAVMTPKERLATVKEGATGA-EVQEKMHKARVEKILVVNDE-FQLKGMITAKDFHKA  206 (496)
T ss_dssp             TTSBGGGTSEEGGGCCEEECC-----CGGGTCC---CCCEEEECTT-SBCCEEECCC-----
T ss_pred             CCCcHHHHhcCCCCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEeehHhHHHHh
Confidence            4678999999765578999999999 99999999999999999876 899999999999864

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=96.33  E-value=0.0033  Score=65.13  Aligned_cols=57  Identities=12%  Similarity=0.174  Sum_probs=47.8

Q ss_pred             hhhhhcCCceEEcCC-CCHHHHHHHHHhcCCceEEEEEEeCCCCCCC-CCCceeeeecHHHHHHHHHh
Q psy4847         113 LCQFYQNSCYFVFED-TTLDVLLKQFKEGIKGHMAFVHRVNNEGEGD-PFYETVGLITLEDVIEELIQ  178 (396)
Q Consensus       113 v~~~~~~~v~~V~~d-t~L~~~L~~f~~~~~~h~avV~~~~~~~~~D-e~g~~vGIVTleDIiEeli~  178 (396)
                      +.++|.+++++|.++ +++.++++.|.+. +...++|+        | +.|+++||||..||+..+..
T Consensus       386 V~diM~~~~vtv~~~~~tv~ea~~~m~~~-~~~~lpVv--------d~~~g~lvGiVt~~Dll~~l~~  444 (527)
T 3pc3_A          386 IAELELPAPPVILKSDATVGEAIALMKKH-RVDQLPVV--------DQDDGSVLGVVGQETLITQIVS  444 (527)
T ss_dssp             GGGGCCCCCSCCEETTCBHHHHHHHHHHH-TCSEEEEE--------CTTTCCEEEEEEHHHHHHHHHH
T ss_pred             HHHhCcCCCeEEcCCCCcHHHHHHHHHHc-CCCeEEEE--------ECCCCEEEEEEEHHHHHHHHHh
Confidence            444445888999999 9999999999985 56666777        7 67899999999999999874

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=96.19  E-value=0.00076  Score=69.39  Aligned_cols=59  Identities=22%  Similarity=0.350  Sum_probs=2.6

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      +.+|+++|++..++.+++.++++. ++++.|.+++..++||++++ ++++|+|+.+||+..
T Consensus       154 ~~~v~~im~~~~~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIt~~Dll~~  212 (494)
T 1vrd_A          154 SKKIKDLMTPREKLIVAPPDISLE-KAKEILHQHRIEKLPLVSKD-NKLVGLITIKDIMSV  212 (494)
T ss_dssp             ---------------------------------------------------------CHHH
T ss_pred             CCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHhh
Confidence            467999999855689999999999 99999999999999999865 899999999999753

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=96.02  E-value=0.0011  Score=68.79  Aligned_cols=58  Identities=19%  Similarity=0.217  Sum_probs=0.0

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      .+..|++|||+.  +++++.+.++. ++.+.|.+++...+||++++ ++++|+|+.||+...
T Consensus       198 ~~~~V~evMT~~--lvt~~~~~~le-eA~~iL~~~kieklpVVd~~-g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          198 AETPIKSVMTTE--VVTGSSPITLE-KANSLLRETKKGKLPIVDSN-GHLVSLVARSDLLKN  255 (556)
T ss_dssp             --------------------------------------------------------------
T ss_pred             cceEhhhhcccc--eEEecCCCCHH-HHHHHHHHccccceeEEccC-CcEEEEEEechhhhh
Confidence            467899999974  99999999999 99999999999999999876 899999999999753

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=95.95  E-value=0.0071  Score=61.95  Aligned_cols=58  Identities=12%  Similarity=0.210  Sum_probs=51.3

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .+.+|+++|++. ++++++.++++. ++++.|.+++..++||++++ ++++|+++.+||+.
T Consensus       150 ~~~~v~~im~~~-~~~~v~~~~~l~-~a~~~m~~~~~~~lpVVd~~-g~lvGivt~~Dil~  207 (491)
T 1zfj_A          150 YNAPISEHMTSE-HLVTAAVGTDLE-TAERILHEHRIEKLPLVDNS-GRLSGLITIKDIEK  207 (491)
T ss_dssp             SSSBTTTSCCCS-CCCCEETTCCHH-HHHHHHHHTTCSEEEEECTT-SBEEEEEEHHHHHH
T ss_pred             CCCcHHHHcCCC-CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHHHH
Confidence            457899999861 477899999999 99999999999999999865 89999999999975

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=95.67  E-value=0.0034  Score=64.53  Aligned_cols=58  Identities=24%  Similarity=0.460  Sum_probs=0.0

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD  103 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~  103 (396)
                      +.+|+++|++  ++++++.++++. ++++.|.+++...+||++++ ++++|+|+.+||+...
T Consensus       149 ~~~v~~im~~--~~~~v~~~~~l~-eal~~m~~~~~~~lpVVde~-g~lvGiiT~~Dil~~~  206 (486)
T 2cu0_A          149 GKLVKELMTK--EVITVPESIEVE-EALKIMIENRIDRLPVVDER-GKLVGLITMSDLVARK  206 (486)
T ss_dssp             --------------------------------------------------------------
T ss_pred             CCCHHHHccC--CCeEECCcCcHH-HHHHHHHHcCCCEEEEEecC-CeEEEEEEHHHHHHhh
Confidence            4579999986  378999999999 99999999999999999865 7899999999998654

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=95.67  E-value=0.0015  Score=67.58  Aligned_cols=60  Identities=18%  Similarity=0.288  Sum_probs=41.0

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      .+.+|+++|++..++.+++.++++. ++++.|.+++..++||++++ ++++|+|+.+||+..
T Consensus       171 ~~~~v~~vm~~~~~~~tv~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIt~~Dll~~  230 (514)
T 1jcn_A          171 HTTLLSEVMTPRIELVVAPAGVTLK-EANEILQRSKKGKLPIVNDC-DELVAIIARTDLKKN  230 (514)
T ss_dssp             ----------CCBCCCCEETTCCST-TTTTHHHHHTCSCCCEESSS-SCCC----CCCCSSC
T ss_pred             CCCCHHHHhCCCCCCeEECCCCCHH-HHHHHHHHcCCCcccEECCC-CeEEEEEEHHHHHHH
Confidence            4568999999744688999999999 99999999999999999865 899999999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	396
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	3e-09
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	2e-07
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	3e-07
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	3e-07
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	7e-07
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	1e-06
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	1e-06
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	2e-05
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	2e-05
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	2e-05
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	4e-05
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	4e-05
d1yava3	132	d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac	8e-05
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	1e-04
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	1e-04
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	2e-04
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	9e-04
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	0.001
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	0.003

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.3 bits (127), Expect = 3e-09
 Identities = 16/153 (10%), Positives = 49/153 (32%), Gaps = 25/153 (16%)

Query: 40  LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL 99
           ++     D++     + +      +  +    ++ +G    P+++ ++ + V M  I D 
Sbjct: 10  MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 68

Query: 100 --ALVDPDDNTPLKTLCQFYQNSC--------------YFVFEDTTLDVLLKQFKEGIKG 143
              L     +  ++                          +  + +L   +       K 
Sbjct: 69  INILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRN-KI 127

Query: 144 HMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL 176
           H   V  ++ E        T+ ++T + +++ L
Sbjct: 128 HRLPV--IDPESG-----NTLYILTHKRILKFL 153

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 19/147 (12%), Positives = 53/147 (36%), Gaps = 21/147 (14%)

Query: 40  LRRKI--VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYE--DRRTNIVTMFY 95
           L+  I  +  +     ++        +  + +  + +   S +P+ +      N+   + 
Sbjct: 4   LKIPIGDLNIITQD--NMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDENGYLINVYEAYD 60

Query: 96  IKDLALVDPDDNTPLKTLCQFYQN-----SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHR 150
           +  L      ++  L       +        Y   ++  L  ++   ++    H  FV  
Sbjct: 61  VLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARV-HRFFV-- 117

Query: 151 VNNEGEGDPFYETVGLITLEDVIEELI 177
           V++ G        VG++TL D+++ ++
Sbjct: 118 VDDVGR------LVGVLTLSDILKYIL 138

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.5 bits (109), Expect = 3e-07
 Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 18/135 (13%)

Query: 45  VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP 104
           V   +T+  D  M+   A +  E +  + +   +   V  DR  +   +   +DL  +D 
Sbjct: 3   VKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVK-DREGHFRGVVNKEDLLDLDL 58

Query: 105 DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETV 164
           D +              +FV E+  +   L  F E  + ++  V         D      
Sbjct: 59  DSSV-----FNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVV---------DEEMRLK 104

Query: 165 GLITLEDVIEELIQA 179
           G ++L D +E LI+A
Sbjct: 105 GAVSLHDFLEALIEA 119

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 47.7 bits (112), Expect = 3e-07
 Identities = 17/186 (9%), Positives = 52/186 (27%), Gaps = 30/186 (16%)

Query: 22  EFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRI 80
           +  + +K  +  I     +R +   DV+     + +   D  L  +T   ++  +     
Sbjct: 1   DVQETQKGALKEIQA--FIRSRTSYDVLPTSFRLIVF--DVTLFVKTSLSLLTLNNIVSA 56

Query: 81  PVYEDRRTNIVTMFYIKDLALV--------------------DPDDNTPLKTLCQFYQNS 120
           P+++        +  + D   V                           ++         
Sbjct: 57  PLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPE 116

Query: 121 CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAE 180
             +V    +L        +  +     +  ++ +GE       V ++T   +++ +    
Sbjct: 117 TIYVHPMHSLMDACLAMSK-SRARRIPL--IDVDGETGSE-MIVSVLTQYRILKFI-SMN 171

Query: 181 IMDETD 186
             +   
Sbjct: 172 CKETAM 177

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 45.9 bits (108), Expect = 7e-07
 Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 13/134 (9%)

Query: 45  VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP 104
           +   MTK   +  +     +  E    +M+     + V  D    +        +  V  
Sbjct: 7   IKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV 63

Query: 105 DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETV 164
                   + +    +      +T L  +L++  E        +  +  EG+       V
Sbjct: 64  PGLPYDIPVERIMTRNLITANVNTPLGEVLRKMAE--HRIKHIL--IEEEGK------IV 113

Query: 165 GLITLEDVIEELIQ 178
           G+ TL D++E   +
Sbjct: 114 GIFTLSDLLEASRR 127

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.7 bits (107), Expect = 1e-06
 Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 18/153 (11%)

Query: 45  VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR-RTNIVTMFYIKDLALVD 103
           V  +M    +   ++++  +  + V  + ++    + V +D      +          + 
Sbjct: 5   VEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIP 61

Query: 104 PDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYET 163
            +       +    +     V  D  +  +     E        V  V++ G        
Sbjct: 62  RNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENG-LERCAV--VDDPGR------V 112

Query: 164 VGLITLEDVIEELIQAEIMDETDVWTDNQHKTK 196
           VG++TL D+   L +A I D         H+TK
Sbjct: 113 VGIVTLTDLSRYLSRASITDILL-----SHRTK 140

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 18/136 (13%), Positives = 47/136 (34%), Gaps = 12/136 (8%)

Query: 43  KIVGDVM-TKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101
           K V  ++  K   V  +  D  +    + ++       + V +D +   +          
Sbjct: 2   KTVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMKDEKLVGILTERDFSRKS 60

Query: 102 VDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFY 161
              D       + +       +V  + T +  +    E    H+     V ++G+     
Sbjct: 61  YLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLP----VLDDGK----- 111

Query: 162 ETVGLITLEDVIEELI 177
             +GL+++ D++++ I
Sbjct: 112 -VIGLLSIGDLVKDAI 126

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 14/139 (10%)

Query: 40  LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL 99
           +  +IV + M     V  ++ DA L+ +    + +     + V +      V +   +D+
Sbjct: 1   MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVDGN--KPVGIITERDI 55

Query: 100 ALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDP 159
                   +      +F   S   + ED+ +   L   ++        V  V+++G    
Sbjct: 56  VKAIGKGKSLETKAEEFMTASLITIREDSPITGALALMRQF-NIRHLPV--VDDKGN--- 109

Query: 160 FYETVGLITLEDVIEELIQ 178
                G+I++ D+   +  
Sbjct: 110 ---LKGIISIRDITRAIDD 125

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 14/133 (10%)

Query: 45  VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP 104
             D+M     V  +     L       + +     +P+  D       +     +     
Sbjct: 3   ARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLA 59

Query: 105 DDNTPLKT-LCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYET 163
               P      +  ++S Y+V  + ++  +L   +E     +     V +E         
Sbjct: 60  AGLDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVP----VISEHR------L 109

Query: 164 VGLITLEDVIEEL 176
           VG++T  D+   L
Sbjct: 110 VGIVTEADIARHL 122

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 18/147 (12%), Positives = 48/147 (32%), Gaps = 18/147 (12%)

Query: 39  ELRRKIVGDVM-TKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIK 97
           E   K + ++      ++ M+     +    +   ++   S +PV +++   +       
Sbjct: 5   EFMSKSLEELQIGTYANIAMVRTTTPVY-VALGIFVQHRVSALPVVDEKGRVVDIYSKFD 63

Query: 98  DLALVDPDDNTPLKTLCQFYQNSC-------YFVFEDTTLDVLLKQFKEGIKGHMAFVHR 150
            + L        L                     +   TL+ ++ +  E  + H   V  
Sbjct: 64  VINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEA-EVHRLVV-- 120

Query: 151 VNNEGEGDPFYETVGLITLEDVIEELI 177
           V+            G+++L D+++ L+
Sbjct: 121 VDEHDV------VKGIVSLSDILQALV 141

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 41.2 bits (95), Expect = 4e-05
 Identities = 20/148 (13%), Positives = 52/148 (35%), Gaps = 18/148 (12%)

Query: 45  VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP 104
           V   M+    V  +  +  LD + V  +++ G+ R+PV +D    +  +  +  +  +  
Sbjct: 4   VKVFMST--KVQTIYKEVRLD-QAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAK 60

Query: 105 DDNTPL------KTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGD 158
             +         K +      +   + E  +++    +      G +  +         +
Sbjct: 61  AVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLIL---------N 111

Query: 159 PFYETVGLITLEDVIEELIQAEIMDETD 186
                 G+IT  D++  L    +M++  
Sbjct: 112 KDNTIRGIITERDLLIALHHILVMEKFK 139

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 40.7 bits (94), Expect = 4e-05
 Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 12/132 (9%)

Query: 45  VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP 104
             +++ +      L   A +  E  +E+ K+      +              +   L   
Sbjct: 3   TSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAV 59

Query: 105 DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETV 164
                L        NS   V +   + V  ++ +         V  VN  GE       V
Sbjct: 60  AQRLDLDGPAMPIANSPITVLDTDPVHVAAEKMRRH-NIRHVVV--VNKNGE------LV 110

Query: 165 GLITLEDVIEEL 176
           G++++ D+  E 
Sbjct: 111 GVLSIRDLCFER 122

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

 Score = 40.0 bits (92), Expect = 8e-05
 Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 13/135 (9%)

Query: 45  VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV-- 102
           VG  M + + V  +     L  E    ++           D    +  +     +     
Sbjct: 4   VGQFMIEADKVAHVQVGNNL--EHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIF 61

Query: 103 -DPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFY 161
                           +     +      D ++K F   I      V   N+E       
Sbjct: 62  GLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGFVCV--ENDEQV----- 114

Query: 162 ETVGLITLEDVIEEL 176
              G+ T   V++EL
Sbjct: 115 -FEGIFTRRVVLKEL 128

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 27/171 (15%), Positives = 61/171 (35%), Gaps = 43/171 (25%)

Query: 44  IVGDVMTKLEDVYMLSYDAILDFETVSEIM----KSGYSRIPVYEDRRTNIV-------- 91
           +  DVM    +  +L+        TV ++     ++ YS  PV   R +  +        
Sbjct: 4   LAMDVMKPRRNDPLLTVLTQDS-MTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRD 62

Query: 92  ------------------TMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVL 133
                             ++ Y  + +   P    P   L      S + V + T ++++
Sbjct: 63  LIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIV 122

Query: 134 LKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDE 184
           +  F++           V + G        +G+IT +DV++ +  A++ ++
Sbjct: 123 VDIFRK----LGLRQCLVTHNGR------LLGIITKKDVLKHI--AQMANQ 161

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 18/133 (13%), Positives = 48/133 (36%), Gaps = 14/133 (10%)

Query: 45  VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP 104
           V DVM    DV  +   A L+ + +   +++      V ++     +   +    A+ + 
Sbjct: 2   VEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEG 58

Query: 105 DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETV 164
           DD      + +  +     +    T+    ++  + +   +     V  + E       +
Sbjct: 59  DDLAE-VKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLL----VEEDDE------II 107

Query: 165 GLITLEDVIEELI 177
           G+I+  D++   +
Sbjct: 108 GVISATDILRAKM 120

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 14/148 (9%), Positives = 39/148 (26%), Gaps = 18/148 (12%)

Query: 45  VGDVMT-KLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNI-------VTMFYI 96
           +  +      ++   S +  +  + +  + +   S +P+     T +       V     
Sbjct: 3   LNQMTIGTWSNLATASMETKVY-DVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQ 61

Query: 97  KDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGE 156
                                 +  +       LD +    K      +  V        
Sbjct: 62  DGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVV-------- 113

Query: 157 GDPFYETVGLITLEDVIEELIQAEIMDE 184
            D   +  G+++L D++  +I  +    
Sbjct: 114 -DENLKLEGILSLADILNYIIYDKTTTP 140

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 37.3 bits (85), Expect = 9e-04
 Identities = 20/168 (11%), Positives = 46/168 (27%), Gaps = 40/168 (23%)

Query: 36  GALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFY 95
            +       VGD+M +  DV  ++  +    + +  + ++     P  +   TN +    
Sbjct: 4   SSANKYNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSI 60

Query: 96  ---------------------------IKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDT 128
                                       +       + N  +         S + + E T
Sbjct: 61  DRTEVEGLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGT 120

Query: 129 TLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL 176
           +L      F             V + G+       VG++ L ++   +
Sbjct: 121 SLQKTHTLFSLLGLDRAY----VTSMGK------LVGVVALAEIQAAI 158

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 18/134 (13%)

Query: 45  VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP 104
           V  +MT+  +   ++  A  +   +    K      PV       +  +           
Sbjct: 3   VKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNKEGKLVGIISVK------RI 53

Query: 105 DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETV 164
             N   + L    +     V E+ TL    K   E        V  V+++G+       V
Sbjct: 54  LVNPDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEY-DYRRVVV--VDSKGK------PV 104

Query: 165 GLITLEDVIEELIQ 178
           G++T+ D+I     
Sbjct: 105 GILTVGDIIRRYFA 118

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 24/150 (16%), Positives = 44/150 (29%), Gaps = 24/150 (16%)

Query: 45  VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL--- 101
           V D+MT+    + L     L+ +    +       +P   D    ++ +   +DL     
Sbjct: 4   VEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVP-IVDANKKLLGIVSQRDLLAAQE 59

Query: 102 ------VDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEG 155
                    D       L +        V     L       ++   G +     V  + 
Sbjct: 60  SSLQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLP----VVAKD 115

Query: 156 EGDPFYETVGLITLEDVIEELI-QAEIMDE 184
                   VG+IT  D +   I   E+ +E
Sbjct: 116 V------LVGIITDSDFVTIAINLLELQEE 139

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	396
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.77
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.72
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.7
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.7
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.69
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.68
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.68
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.66
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.66
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.64
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.64
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.63
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.63
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.63
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.63
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.6
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.6
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.6
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.59
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.58
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.58
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.57
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.56
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.54
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.53
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.43
d1o7fa3	124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	98.77
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	98.76
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	98.72
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	98.69
d1ne6a1	136	Regulatory subunit of Protein kinase A {Cow (Bos t	98.69
d1o5la1	129	CRP-like transcriptional regulator TM1171, N-termi	98.64
d1wgpa_	137	Probable cyclic nucleotide-gated ion channel 6 {Th	98.59
d1o7fa2	155	Regulatory domain of Epac2, domains 1 and 3 {Mouse	98.56
d1cx4a2	147	Regulatory subunit of Protein kinase A {Rat (Rattu	98.49
d1ne6a2	132	Regulatory subunit of Protein kinase A {Cow (Bos t	98.47
d2gaua2	142	Transcriptional regulator PG0396, N-terminal domai	98.46
d1vp6a_	133	Putative ion channel CnbD {Mesorhizobium loti [Tax	98.42
d1zyba2	147	Probable transcription regulator BT4300, N-termina	98.36
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	98.34
d1q3ea_	193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	98.23
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	98.13
d3e5ua2	139	Chlorophenol reduction protein CprK {Desulfitobact	98.11
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	98.1
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.0
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	97.99
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	97.96
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	97.93
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	97.9
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	97.87
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	97.82
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	97.81
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	97.78
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	97.78
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	97.73
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	97.72
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	97.63
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	97.6
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	97.58
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	97.52
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	97.5
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	97.44
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	97.41
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	97.37
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	97.35
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	97.2
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	97.03
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	96.99
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	96.59

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.77  E-value=4.9e-19  Score=149.56  Aligned_cols=121  Identities=15%  Similarity=0.160  Sum_probs=102.5

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--CC-------ccccchhh
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--DP-------DDNTPLKT  112 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~~-------~~~~~l~~  112 (396)
                      ++||+++|+|.+++.+++.++++. ++++.|.++||+++||++++ ++++|+|+.+|++..  ..       ....++++
T Consensus         1 e~tv~~~mip~~~v~~v~~~~tl~-~a~~~m~~~~~s~~pVvd~~-~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~   78 (132)
T d1yava3           1 EATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE   78 (132)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH
T ss_pred             CCCHHHccccccceEEEcCCCCHH-HHHHHHHhhCCCceEEeecc-cccccEEEcchhHHHhhccccccccccccccccc
Confidence            578999999999999999999999 99999999999999999876 899999999999732  11       01234444


Q ss_pred             hhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847         113 LCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ  178 (396)
Q Consensus       113 v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~  178 (396)
                      +   |.++++++.+++++.+++..|.++   ++++|+        |++|+++||||.+||+++|.+
T Consensus        79 ~---m~~~~~~v~~~~~l~~~~~~~~~~---~~l~Vv--------d~~~~~~Givt~~dil~~l~~  130 (132)
T d1yava3          79 V---MLTDIPRLHINDPIMKGFGMVINN---GFVCVE--------NDEQVFEGIFTRRVVLKELNK  130 (132)
T ss_dssp             H---SBCSCCEEETTSBHHHHHHHTTTC---SEEEEE--------CTTCBEEEEEEHHHHHHHHHH
T ss_pred             c---ccccccccccchhHHHHHHHHHhC---CEEEEE--------ccCCEEEEEEEHHHHHHHHHh
Confidence            4   468999999999999999999873   346666        889999999999999999863

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.72  E-value=1.2e-17  Score=139.99  Aligned_cols=121  Identities=17%  Similarity=0.191  Sum_probs=103.9

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc---CCccccchhhhhhh
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV---DPDDNTPLKTLCQF  116 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~---~~~~~~~l~~v~~~  116 (396)
                      |++.+|+++|++  +++++++++++. ++++.|.+++++++||+++  ++++|+++.+|++..   ......++.+++  
T Consensus         1 l~~~~V~d~m~~--~~v~v~~~~tl~-~a~~~m~~~~~~~~pV~d~--~~~~Givt~~dl~~~~~~~~~~~~~v~~~~--   73 (127)
T d2ef7a1           1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVDG--NKPVGIITERDIVKAIGKGKSLETKAEEFM--   73 (127)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTCCTTCBGGGTS--
T ss_pred             CCccCHHHhCCC--CCeEECCcCcHH-HHHHHHHHcCCceEEeecc--cchhhhcchhHHHHHHHhhccccchhhhhh--
Confidence            568899999996  489999999999 9999999999999999975  689999999999753   112234566555  


Q ss_pred             hcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         117 YQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       117 ~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                       .+++++|.+++++.++++.|.+. +.+.++|+        |++|+++|+||..||+++|.
T Consensus        74 -~~~~~~v~~~~~l~~~~~~m~~~-~~~~l~Vv--------d~~~~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1          74 -TASLITIREDSPITGALALMRQF-NIRHLPVV--------DDKGNLKGIISIRDITRAID  124 (127)
T ss_dssp             -EECCCCEETTSBHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHHHHHH
T ss_pred             -hhhccccccccchhHHHHHHHHc-CceEEEEE--------eCCCeEEEEEEHHHHHHHHH
Confidence             57889999999999999999985 67777777        88999999999999999986

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=9.5e-18  Score=145.12  Aligned_cols=128  Identities=13%  Similarity=0.129  Sum_probs=105.9

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC---------cc---c
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP---------DD---N  107 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~---------~~---~  107 (396)
                      |..+||.|+|++..++++++.++++. ++++.|.+++++++||++++.++++|+|+.+||+....         ..   .
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~-eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~   88 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEE   88 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGG
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHH-HHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhh
Confidence            67889999999988999999999999 99999999999999999877689999999999964210         00   0


Q ss_pred             cc----hhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCC-CCCceeeeecHHHHHHHHH
Q psy4847         108 TP----LKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGD-PFYETVGLITLEDVIEELI  177 (396)
Q Consensus       108 ~~----l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~D-e~g~~vGIVTleDIiEeli  177 (396)
                      ..    ......++..++.+|++++++.+++..|.++ +.|.++|+        | ++|+++||||..||++.|.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~-~~~~v~Vv--------d~~~g~~~GivT~~dilk~l~  154 (159)
T d2v8qe2          89 HKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRN-KIHRLPVI--------DPESGNTLYILTHKRILKFLK  154 (159)
T ss_dssp             CBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHH-TCSCEEEE--------CTTTCCEEEEECHHHHHHHHH
T ss_pred             hhcccccceeeeeeccceEEECCCCcHHHHHHHHHHh-CCeEEEEE--------ECCCCeEEEEEeHHHHHHHHH
Confidence            00    1112334567889999999999999999995 78888887        6 5789999999999999986

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=7.9e-17  Score=134.01  Aligned_cols=117  Identities=21%  Similarity=0.187  Sum_probs=103.6

Q ss_pred             cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCce
Q psy4847          43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCY  122 (396)
Q Consensus        43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~  122 (396)
                      ++|+++|++.  +.++++++++. ++++.|.+.+++.+||++++ ++++|+++.+||+......  ++.+++   .+++.
T Consensus         1 m~v~~~m~~~--~~~v~~~~tv~-ea~~~m~~~~~~~v~Vvd~~-~~~~Gii~~~dl~~~~~~~--~v~~~~---~~~~~   71 (121)
T d1vr9a3           1 MKVKKWVTQD--FPMVEESATVR-ECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDLDS--SVFNKV---SLPDF   71 (121)
T ss_dssp             CBGGGGCBSC--SCEEETTCBHH-HHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCTTS--BSGGGC---BCTTC
T ss_pred             CCchhhhcCC--CeEECCCCCHH-HHHHhhhhcCcEEEEEEeCC-ceeEEEeehhhhhhhhccc--cccccc---cCccE
Confidence            4689999964  88999999999 99999999999999999765 7999999999998765543  566665   47888


Q ss_pred             EEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         123 FVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       123 ~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      ++++++++.++++.|.++ +.+.++|+        |+.|+++|+||..||++++.
T Consensus        72 ~v~~~~~l~~~~~~~~~~-~~~~lpVv--------de~g~~~Gvit~~dil~~l~  117 (121)
T d1vr9a3          72 FVHEEDNITHALLLFLEH-QEPYLPVV--------DEEMRLKGAVSLHDFLEALI  117 (121)
T ss_dssp             CEETTSBHHHHHHHHHHC-CCSEEEEE--------CTTCBEEEEEEHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHhc-CceeeeeE--------CCCCeEEEEEEHHHHHHHHH
Confidence            999999999999999995 78878887        99999999999999999998

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.69  E-value=1.4e-17  Score=146.81  Aligned_cols=153  Identities=9%  Similarity=0.118  Sum_probs=119.7

Q ss_pred             CCHHHHHHHHHHhcc-cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--
Q psy4847          26 LEKDEVNIISGALEL-RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--  102 (396)
Q Consensus        26 l~~~E~~~i~~alel-~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--  102 (396)
                      +.+.+...++.+.+| .++++.|+|++..++++++.+.++. +++..|.++|++++||++++.++++|+|+.+||+..  
T Consensus         2 ~~~~~~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~-~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~   80 (179)
T d2ooxe1           2 VQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIK   80 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHH-HHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHH
Confidence            456678888888885 9999999999888899999999999 999999999999999999776899999999999632  


Q ss_pred             -------CCccc-----cc------hhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCcee
Q psy4847         103 -------DPDDN-----TP------LKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETV  164 (396)
Q Consensus       103 -------~~~~~-----~~------l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~v  164 (396)
                             .+...     ..      .......|.+++++|.++++|.+++..|.++ +.|.++|++  ++|+. ..+.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~-~~~~lpVvd--~~g~~-~~~~vv  156 (179)
T d2ooxe1          81 YYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKS-RARRIPLID--VDGET-GSEMIV  156 (179)
T ss_dssp             HHHHHCSCGGGGGGGGGSBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHT-TCSEEEEEE--ECTTT-CCEEEE
T ss_pred             hccccccchhhhhhhhccchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhc-CceEEEEEe--cCCCc-CCCcEE
Confidence                   00000     00      0112223467889999999999999999995 788888882  22221 234799


Q ss_pred             eeecHHHHHHHHHhcccccc
Q psy4847         165 GLITLEDVIEELIQAEIMDE  184 (396)
Q Consensus       165 GIVTleDIiEeli~~eI~DE  184 (396)
                      ||||..||++.|. ..+.++
T Consensus       157 giiT~~dIlk~l~-~~~~~~  175 (179)
T d2ooxe1         157 SVLTQYRILKFIS-MNCKET  175 (179)
T ss_dssp             EEEEHHHHHHHHH-TTCGGG
T ss_pred             EEEeHHHHHHHHH-HhhhHh
Confidence            9999999999997 555543

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.68  E-value=2.4e-17  Score=137.54  Aligned_cols=117  Identities=21%  Similarity=0.219  Sum_probs=85.5

Q ss_pred             cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCce
Q psy4847          43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCY  122 (396)
Q Consensus        43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~  122 (396)
                      ++|+++|++.  ++++++++++. ++++.|.+++++++||++++ |+++|+|+.+||+.....  .++.+++   .++++
T Consensus         1 m~v~diM~~~--~v~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~G~it~~dl~~~~~~--~~~~~~~---~~~~~   71 (122)
T d2yzqa2           1 MRVKTIMTQN--PVTITLPATRN-YALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPDE--EQLAMLV---KRDVP   71 (122)
T ss_dssp             CBHHHHSEES--CCCEESSCC-------------CCEEEEECTT-CCEEEEEESSCC------------CCC---BSCCC
T ss_pred             CCcccccCCC--CEEECCcCcHH-HHHHHHHHcCCcEEEEEecc-ccchhhhhcchhhhhhcc--cchhhcc---cccee
Confidence            4799999974  88999999999 99999999999999999765 899999999999865433  2555555   58889


Q ss_pred             EEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         123 FVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       123 ~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      ++.+++++.+++..|.++ +.+.++|+        |+.|+++|+||..||+++++
T Consensus        72 ~v~~~~~l~~~~~~~~~~-~~~~lpVv--------d~~~~liGiit~~dil~~~~  117 (122)
T d2yzqa2          72 VVKENDTLKKAAKLMLEY-DYRRVVVV--------DSKGKPVGILTVGDIIRRYF  117 (122)
T ss_dssp             EEETTSBHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHHHHTT
T ss_pred             ecchhhHHHHHHHHHHHc-CcEEEEEE--------eCCCEEEEEEEHHHHHHHHH
Confidence            999999999999999996 77777777        88999999999999999987

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.68  E-value=2.1e-17  Score=140.14  Aligned_cols=120  Identities=17%  Similarity=0.186  Sum_probs=103.1

Q ss_pred             cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC--------C--ccccchhh
Q psy4847          43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD--------P--DDNTPLKT  112 (396)
Q Consensus        43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~--------~--~~~~~l~~  112 (396)
                      .+|+++||+.  ++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++...        .  ....++++
T Consensus         2 ~~V~~iMt~~--v~~v~~~~tl~-~a~~~m~~~~~~~ipVv~~~-~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~   77 (141)
T d3ddja1           2 FPVKVFMSTK--VQTIYKEVRLD-QAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD   77 (141)
T ss_dssp             CBHHHHSBCS--CCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH
T ss_pred             EeeHHhCcCC--CeEEcCcCcHH-HHHHHHHHcCCCeeeccccc-CccccccccccchhhhhccccccccccccCCCHHH
Confidence            3699999985  89999999999 99999999999999999876 7899999999986321        0  11345666


Q ss_pred             hhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847         113 LCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ  178 (396)
Q Consensus       113 v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~  178 (396)
                      +|   .++++++.+++++.+++..|.+. +.+.++|+        |++|+++|+||..||++++.+
T Consensus        78 im---~~~~~~v~~~~~~~~~~~~m~~~-~~~~l~Vv--------d~~~~~iGiIt~~Dil~~l~~  131 (141)
T d3ddja1          78 VM---VTNLVTIDELASVNRAAAEMIVK-RIGSLLIL--------NKDNTIRGIITERDLLIALHH  131 (141)
T ss_dssp             HS---BCCCCBCCTTSBHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHHHHHHH
T ss_pred             Hh---CcccccccccchhhHHHHHHHHc-CCCEEEEE--------ccCCEEEEEEEHHHHHHHHHH
Confidence            65   58889999999999999999995 78888888        899999999999999999984

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.66  E-value=1.1e-16  Score=134.27  Aligned_cols=119  Identities=16%  Similarity=0.218  Sum_probs=100.2

Q ss_pred             cccccccccC-CCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc---CCc--cccchhhhhhh
Q psy4847          43 KIVGDVMTKL-EDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV---DPD--DNTPLKTLCQF  116 (396)
Q Consensus        43 ~tV~dIMtp~-~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~---~~~--~~~~l~~v~~~  116 (396)
                      +||+|||+.. .+++++++++++. ++++.|.+++++++||+++  ++++|+++.+||+..   ...  ...++.++|  
T Consensus         2 ~tV~dim~~k~~~v~~i~~~~tl~-~a~~~m~~~~~~~vpV~~~--~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im--   76 (127)
T d2rc3a1           2 KTVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMKD--EKLVGILTERDFSRKSYLLDKPVKDTQVKEIM--   76 (127)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTS--
T ss_pred             ccHHHHHccCCCccEEECCcCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEccchhhhhhhhcccccceeEeeec--
Confidence            5899999863 4799999999999 9999999999999999975  789999999999641   111  224555555  


Q ss_pred             hcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         117 YQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       117 ~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                       .++++++.+++++.+++..|.+. +.+.++|+        | +|+++|+||..||+++++
T Consensus        77 -~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d-~~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          77 -TRQVAYVDLNNTNEDCMALITEM-RVRHLPVL--------D-DGKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             -BCSCCCBCTTCBHHHHHHHHHHH-TCSEEEEE--------E-TTEEEEEEEHHHHHHHHH
T ss_pred             -cceeEEeccCccHHHHHHHHHHC-CCcEEEEE--------E-CCEEEEEEEHHHHHHHHh
Confidence             58999999999999999999996 67777777        6 489999999999999987

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.66  E-value=2.7e-16  Score=132.10  Aligned_cols=116  Identities=15%  Similarity=0.219  Sum_probs=101.7

Q ss_pred             ccccccccCCCEEEEeCCCChhHHHHHHHHHcC-----CcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhc
Q psy4847          44 IVGDVMTKLEDVYMLSYDAILDFETVSEIMKSG-----YSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQ  118 (396)
Q Consensus        44 tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g-----~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~  118 (396)
                      ||+.+|++  +++++++++++. ++++.|.+++     ...+||++++ ++++|++..++++...++  .++.++|   .
T Consensus         2 taG~iM~~--d~i~v~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~~l~~~~~~--~~v~~im---~   72 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIVNDDD--TLIADIL---N   72 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTTSCTT--SBHHHHS---B
T ss_pred             ChhHhCCC--CcEEECCCCcHH-HHHHHhHhhcccccceeeeEEEecC-CeEEEEEEeecccccccc--EEhhhhc---c
Confidence            78999996  489999999999 9999998774     6789999876 899999999999876553  4677776   4


Q ss_pred             CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         119 NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       119 ~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      +++++|.+++++.++++.|.++ +.+.++|+        |+.|+++||||..||++.+.
T Consensus        73 ~~~~~v~~~~~l~~a~~~m~~~-~~~~lPVV--------D~~g~lvGiIt~~Dil~~i~  122 (127)
T d2ouxa2          73 ERVISVHVGDDQEDVAQTIRDY-DFLAVPVT--------DYDDHLLGIVTVDDIIDVID  122 (127)
T ss_dssp             SCCCCEETTSBHHHHHHHHHHH-TCSEEEEE--------CTTCBEEEEEEHHHHHHHHH
T ss_pred             CCCccCCCCCCHHHHHHHHHHh-CCEEEEEE--------eCCCEEEEEEEHHHHHHHHH
Confidence            8899999999999999999996 77888888        88899999999999999875

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.64  E-value=2.8e-16  Score=133.59  Aligned_cols=118  Identities=19%  Similarity=0.143  Sum_probs=100.2

Q ss_pred             cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC---------C---ccccch
Q psy4847          43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD---------P---DDNTPL  110 (396)
Q Consensus        43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~---------~---~~~~~l  110 (396)
                      .+|+|+|++.  +.++..++++. ++++.|.+++++++||++++ ++++|+|+.+||+...         .   ....++
T Consensus         2 i~v~diM~~~--~~~v~~~~tl~-~a~~~m~~~~~~~lpVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v   77 (139)
T d2o16a3           2 IKVEDMMTRH--PHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPL   77 (139)
T ss_dssp             CBGGGTSEES--CCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCCBH
T ss_pred             EEHHHhCcCC--CeEECCcCCHH-HHHHHHHHcCCCeeeeeccc-ccccccccHHHHHHHHHhhhhhhhcccccccccch
Confidence            4799999974  88999999999 99999999999999999876 8999999999996321         0   112355


Q ss_pred             hhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         111 KTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       111 ~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      .++|   .+++++|.+++++.+++..|.+. +.+.++|+        |+ |+++|+||..||++.+.
T Consensus        78 ~~im---~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~-~~lvGiit~~Dil~~~~  131 (139)
T d2o16a3          78 FEVM---HTDVTSVAPQAGLKESAIYMQKH-KIGCLPVV--------AK-DVLVGIITDSDFVTIAI  131 (139)
T ss_dssp             HHHS---CSCEEEBCTTSBHHHHHHHHHHT-TCSCEEEE--------ET-TEEEEEECHHHHHHHHH
T ss_pred             hHhh---ccccccccccchHHHHHHHHHHc-CceEEEEE--------EC-CEEEEEEEHHHHHHHHH
Confidence            6555   58999999999999999999995 77778887        64 89999999999999987

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.64  E-value=2.7e-16  Score=134.43  Aligned_cols=125  Identities=19%  Similarity=0.202  Sum_probs=104.3

Q ss_pred             cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc-CC----ccccchhhhhhhh
Q psy4847          43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV-DP----DDNTPLKTLCQFY  117 (396)
Q Consensus        43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~-~~----~~~~~l~~v~~~~  117 (396)
                      .+|+|+|++.  +.++++++++. ++++.|.+++++++||++++ ++++|+++.+|++.. .+    ....+++++|   
T Consensus         3 m~v~dim~~~--~~~v~~~~tl~-~a~~~m~~~~~~~~~V~d~~-~~~~Giit~~di~~~~~~~~~~~~~~~v~~im---   75 (142)
T d1pvma4           3 MRVEKIMNSN--FKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVM---   75 (142)
T ss_dssp             CBGGGTSBTT--CCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTS---
T ss_pred             EEHHHhCCCC--CcEECCcCcHH-HHHHHHHHCCCceEeeeccC-CcccceEEeechhhhhhhhccccccccccccc---
Confidence            4799999965  88999999999 99999999999999999865 899999999999632 11    1234566665   


Q ss_pred             cCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhccccc
Q psy4847         118 QNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMD  183 (396)
Q Consensus       118 ~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~D  183 (396)
                      .++++++.+++++.++++.|.++ +.+.++|+        |+.|+++|+||..||++.+....+.|
T Consensus        76 ~~~~~~v~~~~~l~~~~~~m~~~-~~~~lpVv--------d~~g~l~Giit~~Dil~~l~~~~~~d  132 (142)
T d1pvma4          76 RKPIPKVKSDYDVKDVAAYLSEN-GLERCAVV--------DDPGRVVGIVTLTDLSRYLSRASITD  132 (142)
T ss_dssp             BSSCCEEETTCBHHHHHHHHHHH-TCSEEEEE--------CTTCCEEEEEEHHHHTTTSCHHHHHH
T ss_pred             ccccccccchhhHHHHHHHHHHc-CCcEEEEE--------ecCCEEEEEEEHHHHHHHHhhhhhhh
Confidence            58899999999999999999986 66766777        88899999999999999876545554

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.63  E-value=1.9e-16  Score=131.90  Aligned_cols=117  Identities=17%  Similarity=0.275  Sum_probs=97.0

Q ss_pred             cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC--C---ccccchhhhhhhh
Q psy4847          43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD--P---DDNTPLKTLCQFY  117 (396)
Q Consensus        43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~--~---~~~~~l~~v~~~~  117 (396)
                      .||+|+|++.  ++++..++++. ++++.|.+++++++||++++ ++++|+|+.+||+...  .   .....++++|   
T Consensus         1 tt~~diM~~~--~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im---   73 (123)
T d1y5ha3           1 TTARDIMNAG--VTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELA---   73 (123)
T ss_dssp             CCHHHHSEET--CCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHH---
T ss_pred             CCHHHhcCCC--CcEECCcCcHH-HHHHHHHHcCCCceEEEecc-chhhhhhhhhhHhhhhhhcCCCcccceEEEEe---
Confidence            4899999864  88999999999 99999999999999999765 7999999999986421  1   1223455555   


Q ss_pred             cCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHH
Q psy4847         118 QNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL  176 (396)
Q Consensus       118 ~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEel  176 (396)
                      ..++.++.+++++.++++.|.++ +.+.++|+        |+ |+++|+||..||+++|
T Consensus        74 ~~~~~~v~~~~~~~~~~~~m~~~-~~~~lpVv--------d~-~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          74 RDSIYYVDANASIQEMLNVMEEH-QVRRVPVI--------SE-HRLVGIVTEADIARHL  122 (123)
T ss_dssp             TTCCCCEETTCCHHHHHHHHHHH-TCSEEEEE--------ET-TEEEEEEEHHHHHHTC
T ss_pred             eccceeeeecchHHHHHHHHHHc-CceEEEEE--------EC-CEEEEEEEHHHHHhhC
Confidence            58889999999999999999986 67767776        54 7999999999999864

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.63  E-value=2.3e-16  Score=135.86  Aligned_cols=125  Identities=14%  Similarity=0.114  Sum_probs=101.0

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc--------------
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD--------------  105 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~--------------  105 (396)
                      |++.+|.++|++.  +++++.++++. ++++.|.+++++++||++++ ++++|+|+..|++.....              
T Consensus         1 ~~~~~v~~~m~r~--v~~v~~~~~l~-~a~~~m~~~~~~~lPVvd~~-~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~   76 (156)
T d2yzqa1           1 YKGVEIEPYYQRY--VSIVWEGTPLK-AALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASSE   76 (156)
T ss_dssp             GGGCBSTTTSBSC--CCCEETTSBHH-HHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC------------
T ss_pred             CCCCCHHHHhcCC--CeEECCcCcHH-HHHHHHHHcCCCEEEEEeCC-CCceeEEeeeechhhhcccccccccccccchh
Confidence            4678999999854  89999999999 99999999999999999765 899999999999531000              


Q ss_pred             -----------------cccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeec
Q psy4847         106 -----------------DNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLIT  168 (396)
Q Consensus       106 -----------------~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVT  168 (396)
                                       ....-..+.++|.+++.+|.+++++.+++..|.++ +.|-++|+        |+.|+++||||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~-~~~~lpVv--------d~~g~lvGivt  147 (156)
T d2yzqa1          77 EEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKY-SIEQLPVI--------RGEGDLIGLIR  147 (156)
T ss_dssp             --------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHH-TCSEEEEE--------ETTTEEEEEEE
T ss_pred             hhhhhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHc-CeeEEEEE--------eCCCEEEEEEE
Confidence                             00011123344568899999999999999999996 66777777        78899999999


Q ss_pred             HHHHHHHHH
Q psy4847         169 LEDVIEELI  177 (396)
Q Consensus       169 leDIiEeli  177 (396)
                      ..||+++|+
T Consensus       148 ~~Dil~~l~  156 (156)
T d2yzqa1         148 DFDLLKVLV  156 (156)
T ss_dssp             HHHHGGGGC
T ss_pred             HHHHHHHhC
Confidence            999998763

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.63  E-value=4.6e-16  Score=129.09  Aligned_cols=116  Identities=15%  Similarity=0.155  Sum_probs=97.7

Q ss_pred             ccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc---C-CccccchhhhhhhhcC
Q psy4847          44 IVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV---D-PDDNTPLKTLCQFYQN  119 (396)
Q Consensus        44 tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~---~-~~~~~~l~~v~~~~~~  119 (396)
                      +|+|+|++  ++++++.++++. ++++.|.+++++.+||.++  |+++|+|+.+||+..   . .....++.++|   .+
T Consensus         1 kV~diM~~--~~~~v~~~~sl~-ea~~~~~~~~~~~~~V~~~--~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m---~~   72 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVKE--GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVM---ER   72 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEET--TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHC---BC
T ss_pred             ChHHhCCC--CCeEECCcCcHH-HHHHHHHHcCceEEEEEeC--CcEEEEEEeeeccccccccccccceeEeeec---cc
Confidence            48999996  488999999999 9999999999999999975  799999999999742   1 11234666665   58


Q ss_pred             CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      ++++|.+++++.++++.|.++ +.+.++|.        | +|+++|+||..||+++.+
T Consensus        73 ~~~~v~~~~~l~~a~~~m~~~-~~~~l~V~--------~-~~~l~Givt~~Dil~A~~  120 (120)
T d1pbja3          73 DLVTISPRATIKEAAEKMVKN-VVWRLLVE--------E-DDEIIGVISATDILRAKM  120 (120)
T ss_dssp             GGGEECTTSCHHHHHHHHHHH-TCSEEEEE--------E-TTEEEEEEEHHHHHHHHC
T ss_pred             ccccccchhHHHHHHHHHHHc-CCeEEEEE--------E-CCEEEEEEEHHHHHhcCC
Confidence            999999999999999999995 67777775        3 589999999999999853

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.63  E-value=1.6e-16  Score=136.32  Aligned_cols=116  Identities=19%  Similarity=0.265  Sum_probs=101.1

Q ss_pred             ccccccccCCCEEEEeCCCChhHHHHHHHHHcC-----CcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhc
Q psy4847          44 IVGDVMTKLEDVYMLSYDAILDFETVSEIMKSG-----YSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQ  118 (396)
Q Consensus        44 tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g-----~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~  118 (396)
                      ||+.||++.  ++++++++++. ++++.|.+++     .+.+||++++ ++++|+++.+||+...+.  .++.++|   .
T Consensus         2 taG~iM~~~--~itv~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~dl~~~~~~--~~v~~im---~   72 (144)
T d2yvxa2           2 EAGGLMTPE--YVAVREGMTVE-EVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVADPR--TRVAEIM---N   72 (144)
T ss_dssp             SSGGGCBSC--CCEECSSCBHH-HHHHHSSSSCTTSSCSSBCEEBCTT-CBBCCBCBHHHHTTSCTT--CBSTTTS---B
T ss_pred             CcccccCCC--CEEECCCCcHH-HHHHHHHHhcccccceeeeEEecCC-CCEecccchhhhhhcccc--cchHHhc---c
Confidence            799999974  89999999999 9999998775     6789999776 899999999999876543  3667766   4


Q ss_pred             CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         119 NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       119 ~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      ++++++.+++++.+|++.|.++ +.+.++|+        |++|+++||||..||++.+.
T Consensus        73 ~~~~~v~~~~~~~~a~~~m~~~-~~~~lPVV--------d~~g~lvGiIt~~Dil~~l~  122 (144)
T d2yvxa2          73 PKVVYVRTDTDQEEVARLMADY-DFTVLPVV--------DEEGRLVGIVTVDDVLDVLE  122 (144)
T ss_dssp             SSCCCEESSCCHHHHHHHHHHS-CCSEEEEE--------CSSCBEEEEEEHHHHHHHHH
T ss_pred             cCCccCCCCChHHHHHHHHHHc-CCCEEEEE--------eECCEEEEEEEHHHHHHHHH
Confidence            8899999999999999999995 77777777        88899999999999999876

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.60  E-value=2.2e-15  Score=125.90  Aligned_cols=112  Identities=16%  Similarity=0.201  Sum_probs=93.8

Q ss_pred             CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC-CCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHH
Q psy4847          54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR-RTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDV  132 (396)
Q Consensus        54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~-~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~  132 (396)
                      +++++++++++. ++++.|.+++++++||+++. .++++|+|+.+||......+. +....+  +..+++++++++++.+
T Consensus         6 dpvtv~~~~tv~-~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~~-~~~~~~--~~~~~~~~~~~~~l~~   81 (126)
T d1zfja4           6 DPFFLTPEHKVS-EAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNA-PISEHM--TSEHLVTAAVGTDLET   81 (126)
T ss_dssp             SCCCBCSSSBHH-HHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSSS-BTTTSC--CCSCCCCEETTCCHHH
T ss_pred             CceEECCCCCHH-HHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccCC-ceeeee--eccceeecCCCCCHHH
Confidence            467899999999 99999999999999999752 478999999999987544332 233332  2567889999999999


Q ss_pred             HHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847         133 LLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ  178 (396)
Q Consensus       133 ~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~  178 (396)
                      +++.|.+. +.+.++|+        |++|+++||||+.||++++..
T Consensus        82 a~~~m~~~-~~~~lpVV--------d~~g~lvGiiT~~Dil~~~~~  118 (126)
T d1zfja4          82 AERILHEH-RIEKLPLV--------DNSGRLSGLITIKDIEKVIEF  118 (126)
T ss_dssp             HHHHHHHT-TCSEEEEE--------CTTSBEEEEEEHHHHHHHHHC
T ss_pred             HHHHHHhc-CCcEEEEE--------cCCCeEEEEEEHHHHHHHhhC
Confidence            99999995 78888888        899999999999999999863

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.60  E-value=2.7e-15  Score=126.39  Aligned_cols=119  Identities=19%  Similarity=0.247  Sum_probs=100.1

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--CCc--cccchhhhhhhh
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--DPD--DNTPLKTLCQFY  117 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~~~--~~~~l~~v~~~~  117 (396)
                      ..+|+++|+.  ++.++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++..  ...  ...+++++|   
T Consensus         4 ~~pV~~im~~--~~~~v~~~~t~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~~~~~~v~~im---   76 (132)
T d2yzia1           4 KAPIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGLPYDIPVERIM---   76 (132)
T ss_dssp             TSBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCCCTTSBGGGTC---
T ss_pred             CCcHHHHcCC--CCeEECCcCcHH-HHHHHHHHcCCcEEEEeccc-ceeeeeeeHHHHHHHHhhccCccceeEeecc---
Confidence            3479999985  489999999999 99999999999999999875 799999999999742  111  234666665   


Q ss_pred             cCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         118 QNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       118 ~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      .++++++.+++++.+++..|.++ +.+.++|.         +.|+++|+||..||++++.
T Consensus        77 ~~~~~~v~~~~~~~~~~~~m~~~-~~~~l~V~---------~~~~~vGivt~~Dil~a~~  126 (132)
T d2yzia1          77 TRNLITANVNTPLGEVLRKMAEH-RIKHILIE---------EEGKIVGIFTLSDLLEASR  126 (132)
T ss_dssp             BCSCCEEETTSBHHHHHHHHHHH-TCSEEEEE---------ETTEEEEEEEHHHHHHHHH
T ss_pred             cccccccCcchHHHHHHHHHHHc-CCCEEEEE---------ECCEEEEEEEHHHHHHHHH
Confidence            58899999999999999999985 66666665         3589999999999999986

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=5.2e-15  Score=125.95  Aligned_cols=127  Identities=15%  Similarity=0.289  Sum_probs=103.2

Q ss_pred             cccccccccccc-CCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc-----cccchhhh
Q psy4847          40 LRRKIVGDVMTK-LEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD-----DNTPLKTL  113 (396)
Q Consensus        40 l~~~tV~dIMtp-~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~-----~~~~l~~v  113 (396)
                      |-.+++++++.+ ..+++++..++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....     ...++..+
T Consensus         6 f~~~~l~~l~i~~~~~v~~v~~~~tv~-eal~~m~~~~~~~lpVvd~~-~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~   83 (145)
T d2v8qe1           6 FMSKSLEELQIGTYANIAMVRTTTPVY-VALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTKA   83 (145)
T ss_dssp             GGGSBHHHHTCSBCSSCCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-SBEEEEEEGGGTGGGGGSSCCCCCSSBHHHH
T ss_pred             HhhCCHHHHcCCCCCCceEEcCcCcHH-HHHHHHHHcCCCcccccccC-CceEEEEEcchhhhhhhcccccchhhhhhhc
Confidence            345688888754 35789999999999 99999999999999999865 789999999999743211     12233333


Q ss_pred             hh---hhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         114 CQ---FYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       114 ~~---~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      +.   .+..++.+|.+++++.++++.|.++ +.|.++|+        |++|+++|+||..||++.++
T Consensus        84 ~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~-~~~~l~Vv--------d~~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          84 LQHRSHYFEGVLKCYLHETLEAIINRLVEA-EVHRLVVV--------DEHDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             GGGCCSCCCSCCEECTTSBHHHHHHHHHHH-TCSEEEEE--------CTTSBEEEEEEHHHHHHHHH
T ss_pred             cchhhhccCCCeEECCCCcHHHHHHHHHHc-CceEEEEE--------ccCCEEEEEEEHHHHHHHHH
Confidence            22   2346788999999999999999985 78888888        88999999999999999998

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=2.8e-15  Score=127.16  Aligned_cols=129  Identities=13%  Similarity=0.257  Sum_probs=99.0

Q ss_pred             ccccccccc-cccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC--C---ccccchhhh
Q psy4847          40 LRRKIVGDV-MTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD--P---DDNTPLKTL  113 (396)
Q Consensus        40 l~~~tV~dI-Mtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~--~---~~~~~l~~v  113 (396)
                      |-.++++++ +.+..++++++.++++. ++++.|.+++++++||++++ ++++|+|+.+|++...  .   .....+...
T Consensus         3 ~~~~~i~~l~~~~~~~v~tv~~~~~v~-~a~~~m~~~~~~~ipVvd~~-~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~   80 (140)
T d2nyca1           3 FLKIPIGDLNIITQDNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVGEA   80 (140)
T ss_dssp             GGGSBGGGSSCCBCSSCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBHHHH
T ss_pred             cccCcHHHhCCccCCCCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CeEcceehhhHHHHHHhhccccccccchhhh
Confidence            345677776 33446799999999999 99999999999999999865 7899999999997431  1   111122222


Q ss_pred             h---hhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhc
Q psy4847         114 C---QFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQA  179 (396)
Q Consensus       114 ~---~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~  179 (396)
                      +   ..+..++++|++++++.++++.|.+. +.|.++|+        |++|+++|+||..||++.|+.|
T Consensus        81 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~l~VV--------d~~~~l~GiIt~~Dii~~l~~g  140 (140)
T d2nyca1          81 LMRRSDDFEGVYTCTKNDKLSTIMDNIRKA-RVHRFFVV--------DDVGRLVGVLTLSDILKYILLG  140 (140)
T ss_dssp             HHHCC------CEECTTSBHHHHHHHHHHH-TCSEEEEE--------CTTSBEEEEEEHHHHHHHHHHC
T ss_pred             hhhhhhcccccEEECCCCcHHHHHHHHHhc-CeeEEEEE--------eCCCeEEEEEEHHHHHHHHhcC
Confidence            1   11235678999999999999999995 88988998        9999999999999999999754

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.58  E-value=1.3e-15  Score=130.65  Aligned_cols=124  Identities=15%  Similarity=0.170  Sum_probs=99.4

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC-CCcEEEEEEhhhhcccC------Cc----c---
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR-RTNIVTMFYIKDLALVD------PD----D---  106 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~-~~~IVGiL~vkDLl~~~------~~----~---  106 (396)
                      .+.+|+|||++  ++.++++++++. ++++.|.+++++.+||++++ .+.++|+++..||+...      ..    +   
T Consensus         9 ~~~~V~diM~~--~~~~v~~~~tv~-e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~   85 (160)
T d2d4za3           9 YNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEML   85 (160)
T ss_dssp             SSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred             cceEHHHhcCC--CCeEECCCCcHH-HHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhcc
Confidence            46799999996  589999999999 99999999999999999853 36899999999995310      00    0   


Q ss_pred             -------------ccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHH
Q psy4847         107 -------------NTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVI  173 (396)
Q Consensus       107 -------------~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIi  173 (396)
                                   ......+..++.+++.+|.+++++.++++.|.+. +.+.++|+        | .|+++||||++||+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~-~v~~l~V~--------d-~g~lvGiIt~~Di~  155 (160)
T d2d4za3          86 TLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLL-GLDRAYVT--------S-MGKLVGVVALAEIQ  155 (160)
T ss_dssp             BHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHH-TCSEEEEE--------E-TTEEEEEEEHHHHH
T ss_pred             ccchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHc-CCeEEEEE--------E-CCEEEEEEEHHHHH
Confidence                         0001112234457889999999999999999996 77778887        5 58999999999999


Q ss_pred             HHHH
Q psy4847         174 EELI  177 (396)
Q Consensus       174 Eeli  177 (396)
                      ++|.
T Consensus       156 k~I~  159 (160)
T d2d4za3         156 AAIE  159 (160)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            9986

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.58  E-value=4.9e-15  Score=127.61  Aligned_cols=124  Identities=12%  Similarity=0.195  Sum_probs=101.6

Q ss_pred             cccccccc-CCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC-----ccccchhhhhhh-
Q psy4847          44 IVGDVMTK-LEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP-----DDNTPLKTLCQF-  116 (396)
Q Consensus        44 tV~dIMtp-~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~-----~~~~~l~~v~~~-  116 (396)
                      .++++|.+ ..+++++.+++++. ++++.|.+++++++||++++ ++++|+++.+||+....     ....++.+++.. 
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~-~a~~~m~~~~~~~lpVvd~~-~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~   79 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVY-DVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKR   79 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHH-HHHHHHHHTTCSEEEEECGG-GBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTS
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHH-HHHHHHHHcCcceEeeeccc-ceEEEEEEeeeeeehhccccccccccchhhheeee
Confidence            46677764 56799999999999 99999999999999999865 79999999999974311     112345555432 


Q ss_pred             --hcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847         117 --YQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ  178 (396)
Q Consensus       117 --~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~  178 (396)
                        +..++.++.+++++.++++.|.++ +.|.++|+        |++|+++||||+.||++.++.
T Consensus        80 ~~~~~~~~~v~~~~~l~~~~~~m~~~-~~~~l~Vv--------d~~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          80 PANFDGVHTCRATDRLDGIFDAIKHS-RVHRLFVV--------DENLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             CCCSSCCCEECTTCBHHHHHHHHHHS-CCSEEEEE--------CTTCBEEEEEEHHHHHHHHHS
T ss_pred             ecccCCCeEECCCCcHHHHHHhhhhc-eeeEEEEE--------cCCCEEEEEEEHHHHHHHHHc
Confidence              235667899999999999999995 78888888        899999999999999999983

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.57  E-value=5e-15  Score=125.77  Aligned_cols=121  Identities=19%  Similarity=0.147  Sum_probs=99.0

Q ss_pred             cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC-------C---------
Q psy4847          41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD-------P---------  104 (396)
Q Consensus        41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~-------~---------  104 (396)
                      +-+.|.++|+..  +++++.++++. +++..|.++|++++||++++ ++++|+|+.+||+...       .         
T Consensus         2 k~~~v~~~m~~~--p~~v~~~~~v~-~a~~~m~~~~~~~ipVvd~~-~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~   77 (145)
T d1o50a3           2 KVKDVCKLISLK--PTVVEEDTPIE-EIVDRILEDPVTRTVYVARD-NKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSS   77 (145)
T ss_dssp             BHHHHTTSSCCC--CEEECTTCBHH-HHHHHHHHSTTCCEEEEEET-TEEEEEEEHHHHHHHHHHHHHCCCC-------C
T ss_pred             cceEhHHhCCCC--CEEECCcCcHH-HHHHHHHHcCCceEEEeccC-cceeeeeccchhhhhhhcccccccchhHHHHhh
Confidence            345688899865  78999999999 99999999999999999865 7999999999996320       0         


Q ss_pred             ---ccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847         105 ---DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ  178 (396)
Q Consensus       105 ---~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~  178 (396)
                         ....+++.++    .++.++.+++++.+++..|.+. +.|.++|+        |++|+++|+||..||+++|.+
T Consensus        78 ~~~~~~~~~~~~~----~~~~~i~~~~~l~~a~~~m~~~-~i~~lpVV--------d~~g~i~Gvit~~dil~~l~~  141 (145)
T d1o50a3          78 MKRLIAKNASEIM----LDPVYVHMDTPLEEALKLMIDN-NIQEMPVV--------DEKGEIVGDLNSLEILLALWK  141 (145)
T ss_dssp             CCCCSSCBHHHHC----BCCCCBCTTSBHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHHHHHHH
T ss_pred             hhhccccCHHHHc----CCCEEEcCCCCHHHHHHHHHHc-CceEEEEE--------eCCCeEEEEEEHHHHHHHHHh
Confidence               0012233332    4567899999999999999995 78888888        889999999999999999974

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.56  E-value=3.8e-15  Score=124.68  Aligned_cols=121  Identities=14%  Similarity=0.107  Sum_probs=97.8

Q ss_pred             cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC-CCcEEEEEEhhhhcccCCccccchhhhhhhhcCCc
Q psy4847          43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR-RTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSC  121 (396)
Q Consensus        43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~-~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v  121 (396)
                      .+|+|+|++  +++++++++++. ++++.|.+++++++||++.+ .++++|+++..|++......... ......+..++
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~-ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~-~~~~~~~~~~~   76 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDL-DGPAMPIANSP   76 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCT-TSBSGGGCBCC
T ss_pred             CCHHHhccC--CCEEECCCCcHH-HHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccccc-ccccccccccc
Confidence            479999985  478999999999 99999999999999999643 47899999999997542111111 11222234678


Q ss_pred             eEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHH
Q psy4847         122 YFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL  176 (396)
Q Consensus       122 ~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEel  176 (396)
                      +++.+++++.++++.|.++ +.+.++|+        |++|+++||||..||++++
T Consensus        77 ~~v~~~~~~~~a~~~m~~~-~i~~lpVv--------d~~g~l~Giit~~Dll~~~  122 (131)
T d2riha1          77 ITVLDTDPVHVAAEKMRRH-NIRHVVVV--------NKNGELVGVLSIRDLCFER  122 (131)
T ss_dssp             CEEETTSBHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHHSCH
T ss_pred             eeEeeecchHHHHHHHHHC-CeEEEEEE--------cCCCeEEEEEEHHHHHHHH
Confidence            8999999999999999996 78888888        8999999999999999865

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.9e-15  Score=129.56  Aligned_cols=125  Identities=18%  Similarity=0.274  Sum_probs=96.6

Q ss_pred             ccccccccccCCCE----EEEeCCCChhHHHHHHHHHcCCcEEEEEeC-CCCcEEEEEEhhhhccc-----CCc------
Q psy4847          42 RKIVGDVMTKLEDV----YMLSYDAILDFETVSEIMKSGYSRIPVYED-RRTNIVTMFYIKDLALV-----DPD------  105 (396)
Q Consensus        42 ~~tV~dIMtp~~dv----~~l~~d~~l~~e~i~~i~~~g~sriPV~~~-~~~~IVGiL~vkDLl~~-----~~~------  105 (396)
                      ...|+|||.|+...    +.+..+.++. ++.+.|.+++++++||+++ +.+.++|+++.+||+..     .+.      
T Consensus         2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~-~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~   80 (169)
T d2j9la1           2 KTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST   80 (169)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTT
T ss_pred             ccchhhhcCcCCCCCceEEECCCcCCHH-HHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccc
Confidence            45789999986432    4566778999 9999999999999999954 34689999999999621     000      


Q ss_pred             --------------cccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHH
Q psy4847         106 --------------DNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLED  171 (396)
Q Consensus       106 --------------~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleD  171 (396)
                                    ....-..+.++|.+++.+|.+++++.++++.|.++ +.+.++|.        | +|+++||||..|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~-~~~~l~V~--------d-~g~lvGiIt~~D  150 (169)
T d2j9la1          81 SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKL-GLRQCLVT--------H-NGRLLGIITKKD  150 (169)
T ss_dssp             CEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHH-TCSEEEEE--------E-TTEEEEEEEHHH
T ss_pred             hhhhhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhc-CceEEEEE--------E-CCEEEEEEEHHH
Confidence                          00011223444557889999999999999999985 77888886        4 689999999999


Q ss_pred             HHHHHH
Q psy4847         172 VIEELI  177 (396)
Q Consensus       172 IiEeli  177 (396)
                      |+++|.
T Consensus       151 il~~l~  156 (169)
T d2j9la1         151 VLKHIA  156 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999996

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.53  E-value=6.8e-15  Score=123.54  Aligned_cols=117  Identities=18%  Similarity=0.133  Sum_probs=98.7

Q ss_pred             cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC--c------------ccc
Q psy4847          43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP--D------------DNT  108 (396)
Q Consensus        43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~--~------------~~~  108 (396)
                      ++|+++|++.  +.++++++++. ++++.|.++|++++||+++   +++|+++..|++....  .            ...
T Consensus         1 m~V~~lM~~~--~~~v~~~~tl~-~a~~~m~~~~~~~l~V~d~---~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (135)
T d3ddja2           1 MNIETLMIKN--PPILSKEDRLG-SAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTT   74 (135)
T ss_dssp             SSGGGTCEES--CCEECTTSBHH-HHHHHTTGGGCCEEEEESS---SEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTS
T ss_pred             CEeeEEeeCC--CeEECCCCcHH-HHHHHHHHhCCeEEEEEec---ceeceeeccchhhhhccccccchhhhhccccccC
Confidence            4799999974  77899999999 9999999999999999853   6999999999864211  1            123


Q ss_pred             chhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         109 PLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       109 ~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      +++++|   .+++.++++++++.+++..|.+. +.+.++|+        |++|+++|+||..||++.+.
T Consensus        75 ~v~~im---~~~~~~v~~~~~l~~a~~~m~~~-~i~~lpVv--------d~~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          75 PIIDYM---TPNPVTVYNTSDEFTAINIMVTR-NFGSLPVV--------DINDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             BGGGTS---EESCCCEETTSCHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHGGGGG
T ss_pred             CHHHHh---CCccceEEeccccchhhhhhhhc-ceeEEEEE--------eCCCEEEEEEEHHHHHHHHH
Confidence            455554   57889999999999999999995 78888888        99999999999999998874

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.43  E-value=7.3e-15  Score=122.01  Aligned_cols=111  Identities=14%  Similarity=0.187  Sum_probs=56.6

Q ss_pred             EEEEeCCCChhHHHHHHHHHcCCcEEEEEeC--CCCcEEEEEEhhhhcccCCc-cccchhhhhhhhcCCceEEcCCCCHH
Q psy4847          55 VYMLSYDAILDFETVSEIMKSGYSRIPVYED--RRTNIVTMFYIKDLALVDPD-DNTPLKTLCQFYQNSCYFVFEDTTLD  131 (396)
Q Consensus        55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~--~~~~IVGiL~vkDLl~~~~~-~~~~l~~v~~~~~~~v~~V~~dt~L~  131 (396)
                      ++++++++++. ++++.|.+++++++||+++  ..++++|+|+.+|+...... ...+...++. +..++.++.+++++.
T Consensus         6 pvtv~~~~tl~-da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~   83 (120)
T d1jr1a4           6 PVVLSPKDRVR-DVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMT-KREDLVVAPAGITLK   83 (120)
T ss_dssp             TCC----CCCC---CCBC---------------CTTCCC----------------------CCS-BTTTSCCEETTCCHH
T ss_pred             CEEECCcCCHH-HHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccccCceeEEEEe-eccCceEECCCCCHH
Confidence            56899999999 9999999999999999974  24789999999999754332 2233444432 235688999999999


Q ss_pred             HHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHH
Q psy4847         132 VLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL  176 (396)
Q Consensus       132 ~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEel  176 (396)
                      +|++.|.++ +.+.++|+        |++|+++||||..||++..
T Consensus        84 ~a~~~m~~~-~i~~lpVV--------d~~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          84 EANEILQRS-KKGKLPIV--------NENDELVAIIARTDLKKNR  119 (120)
T ss_dssp             HHHHHTCSC-C---CEEE--------ETTTEEEEEECHHHHHHHH
T ss_pred             HHHHHHHHc-CccEEEEE--------cCCCEEEEEEEHHHhhhcc
Confidence            999999995 77777777        8889999999999999763

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=1.3e-08  Score=83.34  Aligned_cols=96  Identities=14%  Similarity=0.149  Sum_probs=78.9

Q ss_pred             cHHHHHHHHhcCCCCCCC-ccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKP-TFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNS  318 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~-~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~  318 (396)
                      ++..+++|.+........ ....||+.|++++.+++|++|.|++...++......||+.+||+.++...  .++      
T Consensus        22 ~~~~l~~l~~~~~~~~~~~~ge~I~~~gd~~~~lyii~~G~v~~~~~~~~~~~~~~~G~~fGe~~ll~~--~~r------   93 (124)
T d1o7fa3          22 STTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVND--APR------   93 (124)
T ss_dssp             CHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTEEEEEEETTCEECGGGGTCC--SCC------
T ss_pred             CHHHHHHHHhhCeEEEEcCCCCEEEECCCcCceEEEEEcceEEEEEeeeeecccccCCcchhhhHhhCC--Cce------
Confidence            667788888765544444 46789999999999999999999999999999999999999999998861  100      


Q ss_pred             CcccccCCCcccccccccCCcccccCcEEEEcCC-eEEEEEeHHHHHHHHH
Q psy4847         319 SAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTE-MFYVKIRRSFYLAAKR  368 (396)
Q Consensus       319 ~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d-~~~~~Itr~~Y~~al~  368 (396)
                                               -+|++|.++ |.++.|+|..|+..++
T Consensus        94 -------------------------~~t~~a~~~~~~l~~i~~~~f~~il~  119 (124)
T d1o7fa3          94 -------------------------AASIVLREDNCHFLRVDKEDFNRILR  119 (124)
T ss_dssp             -------------------------SSEEEESSSSEEEEEEEHHHHHHHHH
T ss_pred             -------------------------eeEEEEEeCcEEEEEEcHHHHHHHHh
Confidence                                     139999996 9999999999988653

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.76  E-value=1e-08  Score=84.86  Aligned_cols=98  Identities=15%  Similarity=0.212  Sum_probs=81.5

Q ss_pred             HHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCCCC
Q psy4847         243 LLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNS  318 (396)
Q Consensus       243 vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~  318 (396)
                      -|++|+.++.....+++..||++|++++.+.+|++|+|+|..    |++-...-.+|..+||+.++......        
T Consensus         4 ~le~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~--------   75 (134)
T d2oz6a2           4 HLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGS--------   75 (134)
T ss_dssp             HHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC------------
T ss_pred             HHHHHHHhCEEEEECCCCEEEeCCCcCCEEEEEEEcccceeeeecccccceeeeccCCCccchHHHhcCccc--------
Confidence            478899999888889999999999999999999999999987    77888889999999999988752100        


Q ss_pred             CcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847         319 SAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA  369 (396)
Q Consensus       319 ~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a  369 (396)
                                           ...--++++|.++|+++.|++..|.+.+..
T Consensus        76 ---------------------~~~~~~~~~a~~~~~vl~i~~~~~~~~~~~  105 (134)
T d2oz6a2          76 ---------------------EQERSAWVRAKVECEVAEISYAKFRELSQQ  105 (134)
T ss_dssp             ----------------------CBCCSEEEESSCEEEEEEEHHHHHHHHHH
T ss_pred             ---------------------cccceeEEEECCCEEEEEEeHHHHHHHHHH
Confidence                                 000113899999999999999999988764

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.72  E-value=1.6e-08  Score=84.08  Aligned_cols=99  Identities=15%  Similarity=0.071  Sum_probs=81.5

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE---cCCcceeecCCccchhhhhcccccccCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV---GKENLVYEAGPFSYFGCQALTQNIGIAESPTN  316 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~---G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~  316 (396)
                      ++..+..|+.........++..||+.|+++|.|++|++|+|+|..   |.+.-....+|+.+||+.+|...  .++    
T Consensus        28 ~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~y~I~~G~v~v~~~~~~~~~~~~~l~~g~~fg~~~l~~~--~~~----  101 (136)
T d1cx4a1          28 DPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYN--TPR----  101 (136)
T ss_dssp             CHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEEETTEEEEEEEEESSCEECHHHHHHC--CCC----
T ss_pred             CHHHHHHHhcceEEEEECCCCEEEECCCcchhhhhhhhheeEEeeccccceeeeeccCCccccchHHHhCC--Ccc----
Confidence            456688888887777777888999999999999999999999987   44556668999999999998762  100    


Q ss_pred             CCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHhh
Q psy4847         317 NSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATL  371 (396)
Q Consensus       317 ~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as~  371 (396)
                                                 .++++|.++|+++.|+|..|...++.+.
T Consensus       102 ---------------------------~~s~~a~~~~~~~~i~~~~f~~ll~~~~  129 (136)
T d1cx4a1         102 ---------------------------AATITATSPGALWGLDRVTFRRIIVKNN  129 (136)
T ss_dssp             ---------------------------CSEEEESSCEEEEEEEHHHHHHHHHHHH
T ss_pred             ---------------------------eEEEEECCCEEEEEEeHHHHHHHHHhCH
Confidence                                       1499999999999999999998876543

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=2.7e-08  Score=81.52  Aligned_cols=96  Identities=17%  Similarity=0.172  Sum_probs=81.3

Q ss_pred             HHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCC
Q psy4847         241 GSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTN  316 (396)
Q Consensus       241 e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~  316 (396)
                      +..|..|++++.+...+++..||+.|.+++.+.+|++|+|++..    |++....-.+|..+||..++....        
T Consensus         3 d~~le~l~~~~~~~~~~~g~~i~~~g~~~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~G~~~~~~~~--------   74 (132)
T d1i5za2           3 DPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG--------   74 (132)
T ss_dssp             CHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEESCTTTTSSS--------
T ss_pred             HHHHHHHHHhCEEEEECcCCEEEcCCCCCCEEEEEEEccceeeeccccchhhhhhhhCcccccchHHHhcCC--------
Confidence            45688999999999899999999999999999999999999886    777888889999999987776410        


Q ss_pred             CCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         317 NSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       317 ~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                                              --..++++|.++|.++.|++..|...+.
T Consensus        75 ------------------------~~~~~~~~a~~~~~v~~i~~~~~~~~~~  102 (132)
T d1i5za2          75 ------------------------QERSAWVRAKTACEVAEISYKKFRQLIQ  102 (132)
T ss_dssp             ------------------------CBCCSEEEESSCEEEEEEEHHHHHHHHH
T ss_pred             ------------------------ccceEEEEEccceEEEEEcHHHHHHHHh
Confidence                                    0012489999999999999999987654

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.69  E-value=2.1e-08  Score=83.80  Aligned_cols=99  Identities=19%  Similarity=0.126  Sum_probs=83.2

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS  319 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~  319 (396)
                      ++..+..|+........+++..||+.|++++.+++|++|+|+|..+.+. ..+.||.++||+.+|....  ++       
T Consensus        32 ~~~~l~~l~~~~~~~~~~~ge~I~~~gd~~~~~yiI~~G~v~v~~~~~~-~~~l~~G~~fGe~~ll~~~--~~-------  101 (136)
T d1ne6a1          32 DDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEW-ATSVGEGGSFGELALIYGT--PR-------  101 (136)
T ss_dssp             CHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEETTEE-EEEECTTCEECCHHHHHCC--CC-------
T ss_pred             CHHHHHHHhcceEEEEECCCCEEEeCCCCcceeeeecCCceeeeccccc-cceeccccccccHHHcCCC--cc-------
Confidence            5667888998887777788889999999999999999999999986654 5689999999999988621  00       


Q ss_pred             cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHhhh
Q psy4847         320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLM  372 (396)
Q Consensus       320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as~~  372 (396)
                                              .+||+|.++|+++.|+|..|...++-+-.
T Consensus       102 ------------------------~~tv~a~~~~~l~~i~~~~f~~ll~~~~~  130 (136)
T d1ne6a1         102 ------------------------AATVKAKTNVKLWGIDRDSYRRILMGSTL  130 (136)
T ss_dssp             ------------------------CSEEEESSCEEEEEEEHHHHHHHTHHHHH
T ss_pred             ------------------------eEEEEEccCEEEEEEEHHHHHHHHhhCHH
Confidence                                    23999999999999999999988876544

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: CRP-like transcriptional regulator TM1171, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.64  E-value=2.8e-08  Score=81.11  Aligned_cols=93  Identities=17%  Similarity=0.228  Sum_probs=76.9

Q ss_pred             HHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847         244 LDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS  319 (396)
Q Consensus       244 L~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~  319 (396)
                      |++|++++......++..||+.|++++++.+|++|+|++..    |++-.....+|.++||..++....  ++       
T Consensus         3 l~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~--~~-------   73 (129)
T d1o5la1           3 LKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSE--PR-------   73 (129)
T ss_dssp             GGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSS--CB-------
T ss_pred             HHHHHhCCEEEEECCCCEEEECCCcCcEEEEEeccccEEEEeecccccchhhhcccccccchHHHhccC--CC-------
Confidence            45677777777788889999999999999999999999865    677799999999999999887510  00       


Q ss_pred             cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                                           |  -++++|.+||+.+.|+++.|.+.+.
T Consensus        74 ---------------------~--~~~~~a~~~~~vl~i~~~~~~~~~~   99 (129)
T d1o5la1          74 ---------------------F--PVNVVAGENSKILSIPKEVFLDLLM   99 (129)
T ss_dssp             ---------------------C--SSEEEESSSEEEEEEEHHHHHHHHH
T ss_pred             ---------------------c--cEEEEeecccEEEEEcHHHHHHHHH
Confidence                                 0  1389999999999999999987544

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.59  E-value=1.2e-07  Score=79.15  Aligned_cols=104  Identities=20%  Similarity=0.195  Sum_probs=78.0

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE---cCCcc--eeecCCccchhhhhcccccccCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV---GKENL--VYEAGPFSYFGCQALTQNIGIAESP  314 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~---G~e~~--~~E~gpfs~~G~~aL~~~~~~~~~~  314 (396)
                      ++..|.+|..........+...||++|++.+++++|++|+|++..   ++...  ....||.++||+.+|....  .+..
T Consensus        18 ~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~ly~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGE~~ll~~~--~~~~   95 (137)
T d1wgpa_          18 DERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWAL--DPKS   95 (137)
T ss_dssp             CHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTHHHHHHH--CSSC
T ss_pred             CHHHHHHHHHhcEEEEECCCCEEEecccccceeehhccCceEEEEecCCCceeeeeeeccCCcEEcchhHhccC--CCcc
Confidence            567788888888888888889999999999999999999999876   22222  3467999999999997521  1111


Q ss_pred             CCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847         315 TNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK  367 (396)
Q Consensus       315 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al  367 (396)
                      ..+ .+.                     --.||+|+++|+++.|+|..+.+.+
T Consensus        96 ~~~-~~~---------------------r~~tv~a~t~~~l~~L~~~dl~~il  126 (137)
T d1wgpa_          96 GSN-LPS---------------------STRTVKALTEVEAFALIADELKFVA  126 (137)
T ss_dssp             CSS-SCB---------------------CSSEEEESSCBEEEEEEHHHHHHHH
T ss_pred             ccc-ccc---------------------cCcEEEEeeeEEEEEEEHHHHHHHH
Confidence            000 000                     0138999999999999999998865

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=1.1e-07  Score=80.68  Aligned_cols=95  Identities=16%  Similarity=0.134  Sum_probs=78.0

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE------cCCcceeecCCccchhhhhcccccccCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV------GKENLVYEAGPFSYFGCQALTQNIGIAES  313 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~------G~e~~~~E~gpfs~~G~~aL~~~~~~~~~  313 (396)
                      +...+.+|.+.......+++..||+.|++++.|++|++|+|+|.+      |+.....+.||+++||+ ++...  .   
T Consensus        36 ~~~~l~~l~~~~~~~~~~~ge~I~~~gd~~~~~y~I~~G~v~v~~~~~~~~~~~~~v~~l~~g~~fGe-~~l~~--~---  109 (155)
T d1o7fa2          36 HPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDN--T---  109 (155)
T ss_dssp             CHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCEECG-GGGGT--C---
T ss_pred             CHHHHHHHHHhcEEEEECCCCEEEeCCCcceeeEEEeccchheeeecccccccccccccccccccchh-hhhcC--C---
Confidence            567788899888777778888999999999999999999999986      44556778999999997 44431  0   


Q ss_pred             CCCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         314 PTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       314 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                            |                      -.+||+|.++|+++.|+|..|+..++
T Consensus       110 ------~----------------------~~~tv~a~~~~~l~~i~~~~f~~il~  136 (155)
T d1o7fa2         110 ------P----------------------RHATIVTRESSELLRIEQEDFKALWE  136 (155)
T ss_dssp             ------B----------------------CSSEEEESSSEEEEEEEHHHHHHHHH
T ss_pred             ------C----------------------ceEEEEECCCEEEEEEeHHHHHHHHH
Confidence                  0                      02499999999999999999988764

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=9.1e-08  Score=80.02  Aligned_cols=96  Identities=13%  Similarity=0.052  Sum_probs=78.6

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----------cCCcceeecCCccchhhhhcccccc
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----------GKENLVYEAGPFSYFGCQALTQNIG  309 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----------G~e~~~~E~gpfs~~G~~aL~~~~~  309 (396)
                      ++..+.+|.........+++..||+.|++.+.+++|++|+|+|..          |++.-....+|..+||+.++.... 
T Consensus        14 ~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~~~~~~i~~~~~g~~fGe~~~~~~~-   92 (147)
T d1cx4a2          14 EVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQYFGELALVTNK-   92 (147)
T ss_dssp             CHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEEEEEEEEEEC--------CCEEEEEEECTTCEESCHHHHHTC-
T ss_pred             CHHHHHHHHHhCEEEEECCCCEEEeCCCCCceeEEEecceEEEEEecCCCccccccceeeeeeccCCcEeeehhhcCCC-
Confidence            566788888887777778888999999999999999999999975          333346678999999999987620 


Q ss_pred             cCCCCCCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847         310 IAESPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR  368 (396)
Q Consensus       310 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~  368 (396)
                                                      -..||++|.++|+++.|+|..|.+.+.
T Consensus        93 --------------------------------~~~~t~~a~~~~~~~~i~~~~f~~ll~  119 (147)
T d1cx4a2          93 --------------------------------PRAASAHAIGTVKCLAMDVQAFERLLG  119 (147)
T ss_dssp             --------------------------------CCSSEEEEEEEEEEEEEEHHHHHHHCG
T ss_pred             --------------------------------CceEEEEECCCEEEEEEEHHHHHHHHH
Confidence                                            124699999999999999999887754

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.47  E-value=1.7e-07  Score=77.14  Aligned_cols=95  Identities=26%  Similarity=0.227  Sum_probs=77.1

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcc-eeecCCccchhhhhcccccccCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENL-VYEAGPFSYFGCQALTQNIGIAESP  314 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~-~~E~gpfs~~G~~aL~~~~~~~~~~  314 (396)
                      ++.-+..|..........++..||+.|++++.+++|++|+|++..    |++.. ....+|+++||+.++....      
T Consensus        14 ~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yii~~G~v~~~~~~~~~~~~~~~~~~~~g~~fG~~~~~~~~------   87 (132)
T d1ne6a2          14 DKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNR------   87 (132)
T ss_dssp             CHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECCEEEEEESSSSCCEEEEEEECTTCEECHHHHHHTS------
T ss_pred             CHHHHHHHHHhCEEEEECCCCEEEEcCCcchHHHHHHhhhheeeccCCccccchhhhhccccceeeEeeecCCC------
Confidence            445567777777777778888999999999999999999999877    33333 6789999999999887620      


Q ss_pred             CCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847         315 TNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK  367 (396)
Q Consensus       315 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al  367 (396)
                                               .+  .+|++|.++|+++.|++..|...+
T Consensus        88 -------------------------~~--~~t~~a~~~~~~~~i~~~~~~~ll  113 (132)
T d1ne6a2          88 -------------------------PR--AATVVARGPLKCVKLDRPRFERVL  113 (132)
T ss_dssp             -------------------------SC--SSEEEESSCEEEEEEEHHHHHHHT
T ss_pred             -------------------------ce--eEEEEEcccEEEEEEEHHHHHHHH
Confidence                                     01  349999999999999999998875

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=98.46  E-value=2.2e-07  Score=77.23  Aligned_cols=96  Identities=9%  Similarity=0.069  Sum_probs=80.1

Q ss_pred             HHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCC
Q psy4847         241 GSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTN  316 (396)
Q Consensus       241 e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~  316 (396)
                      +.-+..|.++......+++..||+.|++++++++|++|+|.+..    |++.+..-.+|..+||..++....     +  
T Consensus        14 ~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~ly~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~-----~--   86 (142)
T d2gaua2          14 EEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEE-----T--   86 (142)
T ss_dssp             HHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHTS-----C--
T ss_pred             HHHHHHHHhcCEEEEECCCCEEEeCCCccceEEEEEecceeeEeeccccceeeeecccccchhhhhhhhccC-----C--
Confidence            34466677777777888889999999999999999999999987    888888999999999999887621     0  


Q ss_pred             CCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847         317 NSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA  369 (396)
Q Consensus       317 ~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a  369 (396)
                                                --++++|+++|+++.|+++.|.+.++.
T Consensus        87 --------------------------~~~~~~a~~~s~v~~i~~~~~~~l~~~  113 (142)
T d2gaua2          87 --------------------------CSSTAIAVENSKVLAIPVEAIEALLKG  113 (142)
T ss_dssp             --------------------------CSSEEEESSCEEEEEEEHHHHHHHHHH
T ss_pred             --------------------------ceeEEEecCCEEEEEEeHHHHHHHHHH
Confidence                                      023899999999999999999887654

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

Probab=98.42  E-value=3.7e-07  Score=75.28  Aligned_cols=94  Identities=20%  Similarity=0.277  Sum_probs=78.6

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS  319 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~  319 (396)
                      ++..+.+|+........++...||+.|++++.+++|++|+|+|.....   .+.+|.++||+.++....     +     
T Consensus        23 ~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~I~~G~v~v~~~~~---~~l~~G~~~G~~~~l~~~-----~-----   89 (133)
T d1vp6a_          23 GPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP---VELGPGAFFGEMALISGE-----P-----   89 (133)
T ss_dssp             CHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSSC---EEECTTCEECHHHHHHCC-----C-----
T ss_pred             CHHHHHHHHHhCEEEEECCCCEEEeCCCCCccceeeeccccEEEEeee---eeeccCcccccccccCCC-----c-----
Confidence            567789999888888888889999999999999999999999876433   368999999998877511     0     


Q ss_pred             cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847         320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA  369 (396)
Q Consensus       320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a  369 (396)
                                             --++++|.++|.++.|+++.+.+.+..
T Consensus        90 -----------------------~~~~~~a~~~~~i~~i~~~~~~~l~~~  116 (133)
T d1vp6a_          90 -----------------------RSATVSAATTVSLLSLHSADFQMLCSS  116 (133)
T ss_dssp             -----------------------CSSCEEESSSEEEEEEEHHHHHHHHHH
T ss_pred             -----------------------ccceEEECCCEEEEEEeHHHHHHHHHh
Confidence                                   024899999999999999999998763

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.36  E-value=7.6e-07  Score=74.28  Aligned_cols=96  Identities=18%  Similarity=0.146  Sum_probs=77.4

Q ss_pred             cHHHHHHHHhcCC--CCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCC
Q psy4847         240 VGSLLDRITQKGT--SQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAES  313 (396)
Q Consensus       240 ~e~vL~~Ll~~~~--v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~  313 (396)
                      ++.-+..|+.+..  +....++..||+.|.+++++.+|++|.|+|..    |++-.....+|..+||+.++...  ..+.
T Consensus        18 ~~~~~~~ll~~~~~~~~~~~~g~~i~~~g~~~~~iy~i~~G~v~v~~~~~~g~~~~~~~~~~g~~fGe~~~~~~--~~~~   95 (147)
T d1zyba2          18 CHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGM--NTNY   95 (147)
T ss_dssp             CHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEECGGGGSSS--CCBC
T ss_pred             CHHHHHHHHhhCceEEEEECCCCEEEeccCCccEEEEEecceEEEEEEcCCCCEEEEEEcCCCCEeccchhhcc--cccc
Confidence            4456788887654  34567888999999999999999999999887    78888899999999998887641  0000


Q ss_pred             CCCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847         314 PTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK  367 (396)
Q Consensus       314 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al  367 (396)
                                                    .+++.|.++|..+.|+++.|.+.+
T Consensus        96 ------------------------------~~~v~a~~~~~vl~i~~~~~~~~~  119 (147)
T d1zyba2          96 ------------------------------ASSYVAHTEVHTVCISKAFVLSDL  119 (147)
T ss_dssp             ------------------------------SSEEEESSCEEEEEEEHHHHHHTG
T ss_pred             ------------------------------cceeeecceeeeeehhHHHHHHHH
Confidence                                          138999999999999999998754

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=1.5e-06  Score=75.90  Aligned_cols=96  Identities=16%  Similarity=0.036  Sum_probs=78.7

Q ss_pred             cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847         240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS  319 (396)
Q Consensus       240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~  319 (396)
                      ++..+..|..+.......++..|++.|++++..++|++|+|+|.... +-....+|.++||+.++....           
T Consensus        80 ~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~-~~~~~l~~G~~fGe~~~~~~~-----------  147 (193)
T d1q3ea_          80 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKG-NKEMKLSDGSYFGEICLLTRG-----------  147 (193)
T ss_dssp             CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-C-CCEEEECTTCEECHHHHHHCS-----------
T ss_pred             hHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCC-cceeeeccceeeeeeeccCCC-----------
Confidence            56778888877766666778889999999999999999999998744 345689999999999988610           


Q ss_pred             cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847         320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA  369 (396)
Q Consensus       320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a  369 (396)
                                            -..++++|.++|.++.|+|..|++.+..
T Consensus       148 ----------------------~~~~~~~a~~~~~l~~l~~~~f~~ll~~  175 (193)
T d1q3ea_         148 ----------------------RRTASVRADTYCRLYSLSVDNFNEVLEE  175 (193)
T ss_dssp             ----------------------BCSSEEEESSCEEEEEEEHHHHHHHHHH
T ss_pred             ----------------------cccccceecCceEEEEEeHHHHHHHHHH
Confidence                                  0235999999999999999999998863

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.13  E-value=8e-07  Score=73.06  Aligned_cols=59  Identities=12%  Similarity=0.251  Sum_probs=53.1

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      -.+.+|+++|++.  +.++.+++++. ++++.|.++++.++||++++ |+++|+|+.+||+.+
T Consensus        62 ~~~~~v~~im~~~--~~~v~~~~~l~-~a~~~m~~~~~~~lPVVD~~-g~lvGiIt~~Dil~~  120 (127)
T d2ouxa2          62 DDDTLIADILNER--VISVHVGDDQE-DVAQTIRDYDFLAVPVTDYD-DHLLGIVTVDDIIDV  120 (127)
T ss_dssp             CTTSBHHHHSBSC--CCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHH
T ss_pred             cccEEhhhhccCC--CccCCCCCCHH-HHHHHHHHhCCEEEEEEeCC-CEEEEEEEHHHHHHH
Confidence            4578999999965  78999999999 99999999999999999765 899999999999753

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=98.11  E-value=1.6e-06  Score=71.76  Aligned_cols=90  Identities=19%  Similarity=0.188  Sum_probs=75.1

Q ss_pred             HHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847         244 LDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS  319 (396)
Q Consensus       244 L~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~  319 (396)
                      +++++.+..+....++..|+..|.+++++.+|++|+|++..    |++....-.+|.++||+..+..             
T Consensus        17 l~~l~~~~~~~~y~kg~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~l~~~~~g~~~g~~~~~~-------------   83 (139)
T d3e5ua2          17 LRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGKLYPTG-------------   83 (139)
T ss_dssp             GGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCCSCCS-------------
T ss_pred             HHHHHHhCEEEEECCCCEEEeCCCCCCEEEEEEeccceEEEeeccccccceeeccccceeehhhhhc-------------
Confidence            56778888888888899999999999999999999999876    7777778889999999743221             


Q ss_pred             cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847         320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA  369 (396)
Q Consensus       320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a  369 (396)
                                         .    .++++|.++|+++.|++..+.+.++.
T Consensus        84 -------------------~----~~~~~a~~~~~v~~i~~~~f~~l~~~  110 (139)
T d3e5ua2          84 -------------------N----NIYATAMEPTRTCWFSEKSLRTVFRT  110 (139)
T ss_dssp             -------------------C----EEEEEESSCEEEEEECHHHHHHHHHH
T ss_pred             -------------------c----cccccccccceEEEeeHHHHHHHHhc
Confidence                               0    13889999999999999999887764

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.10  E-value=1.2e-06  Score=72.20  Aligned_cols=86  Identities=10%  Similarity=-0.000  Sum_probs=70.1

Q ss_pred             HHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE---cCCcceeecCCccchhhhhcccccccCCCCCCCCCc
Q psy4847         244 LDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV---GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSA  320 (396)
Q Consensus       244 L~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~---G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~  320 (396)
                      +..|++...+...+|+..||++|++++.+++|++|++++..   |++...+..||..+||+.+          +      
T Consensus        15 ~~~~~~~~~~~~~~kG~~i~~~g~~~~~ly~v~~G~v~~~~~~~g~e~~l~~~~~g~~f~~~~----------~------   78 (132)
T d1ft9a2          15 GETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMHS----------G------   78 (132)
T ss_dssp             TTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEESCS----------S------
T ss_pred             HHHHHHhCEEEEecCCcEEECCCCCCCEEEEEEeCeEeeeccccccceeeccccccccccccc----------c------
Confidence            34455556667778888999999999999999999999877   6677888888888886521          0      


Q ss_pred             ccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847         321 AQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA  369 (396)
Q Consensus       321 ~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a  369 (396)
                                              ++++|+++|..+.|+|+.+...+..
T Consensus        79 ------------------------~~v~A~~~s~v~~i~~~~~~~ll~~  103 (132)
T d1ft9a2          79 ------------------------CLVEATERTEVRFADIRTFEQKLQT  103 (132)
T ss_dssp             ------------------------CEEEESSCEEEEEECHHHHHHHHHH
T ss_pred             ------------------------ccceeccceeeeeehHHHHHHHHHH
Confidence                                    2799999999999999999887654

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.00  E-value=2.7e-06  Score=71.38  Aligned_cols=58  Identities=21%  Similarity=0.286  Sum_probs=52.5

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ....+|+++|++.  +.++..++++. +++..|.++|+.++||++++ |+++|+|+.+||+.
T Consensus        96 ~~~~~v~~~m~~~--~~tv~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dil~  153 (156)
T d2yzqa1          96 LPNKPVAEIMTRD--VIVATPHMTVH-EVALKMAKYSIEQLPVIRGE-GDLIGLIRDFDLLK  153 (156)
T ss_dssp             -CCCBGGGTCBSS--CCCBCTTSBHH-HHHHHHHHHTCSEEEEEETT-TEEEEEEEHHHHGG
T ss_pred             ccCCEeehhcccC--ceEECcccccH-HHHHHHHHcCeeEEEEEeCC-CEEEEEEEHHHHHH
Confidence            5678999999975  78899999999 99999999999999999876 89999999999975

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.99  E-value=3.3e-06  Score=69.26  Aligned_cols=59  Identities=12%  Similarity=0.139  Sum_probs=53.1

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      +...+|+++|++.  +.+++.++++. ++++.|.+++.+++||++++ |+++|+|+.+|++.+
T Consensus        71 ~~~~~v~~im~~~--~~~v~~~~~l~-~a~~~m~~~~i~~lpVvd~~-g~lvGiit~~Dil~~  129 (135)
T d3ddja2          71 ISTTPIIDYMTPN--PVTVYNTSDEF-TAINIMVTRNFGSLPVVDIN-DKPVGIVTEREFLLL  129 (135)
T ss_dssp             HHTSBGGGTSEES--CCCEETTSCHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHGGG
T ss_pred             cccCCHHHHhCCc--cceEEeccccc-hhhhhhhhcceeEEEEEeCC-CEEEEEEEHHHHHHH
Confidence            4567899999865  78999999999 99999999999999999765 899999999999864

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.96  E-value=1.4e-06  Score=70.93  Aligned_cols=76  Identities=16%  Similarity=0.292  Sum_probs=59.6

Q ss_pred             cCCCCHHHH--HHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847          23 FNDLEKDEV--NIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA  100 (396)
Q Consensus        23 ~~~l~~~E~--~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl  100 (396)
                      .|.++..+.  ..+..........++++|++.  +++++.++++. ++++.|.++++.++||+++  ++++|+|+..||+
T Consensus        45 ~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~~~-~~~~~m~~~~~~~lpVvd~--~~lvGiit~~Dil  119 (123)
T d1y5ha3          45 HGMLTDRDIVIKGLAAGLDPNTATAGELARDS--IYYVDANASIQ-EMLNVMEEHQVRRVPVISE--HRLVGIVTEADIA  119 (123)
T ss_dssp             EEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTC--CCCEETTCCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHH
T ss_pred             hhhhhhhhHhhhhhhcCCCcccceEEEEeecc--ceeeeecchHH-HHHHHHHHcCceEEEEEEC--CEEEEEEEHHHHH
Confidence            344555442  223333455677899999865  78999999999 9999999999999999985  6899999999998


Q ss_pred             ccC
Q psy4847         101 LVD  103 (396)
Q Consensus       101 ~~~  103 (396)
                      ..-
T Consensus       120 ~~l  122 (123)
T d1y5ha3         120 RHL  122 (123)
T ss_dssp             HTC
T ss_pred             hhC
Confidence            643

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.93  E-value=9.7e-06  Score=67.47  Aligned_cols=61  Identities=18%  Similarity=0.206  Sum_probs=54.0

Q ss_pred             cccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC
Q psy4847          39 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD  103 (396)
Q Consensus        39 el~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~  103 (396)
                      ...+.+|+++|++  +++++++++++. ++++.|.++++.++||++++ |+++|+|+.+||+..-
T Consensus        65 ~~~~~~v~~im~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~l~Giit~~Dil~~l  125 (142)
T d1pvma4          65 KPDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENGLERCAVVDDP-GRVVGIVTLTDLSRYL  125 (142)
T ss_dssp             CGGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHTCSEEEEECTT-CCEEEEEEHHHHTTTS
T ss_pred             ccccccccccccc--ccccccchhhHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHHHH
Confidence            3566789999985  488999999999 99999999999999999876 8999999999998744

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=97.90  E-value=5.9e-06  Score=69.11  Aligned_cols=59  Identities=19%  Similarity=0.291  Sum_probs=53.2

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      ..+.+++++|++.  ++++++++++. ++++.|.++++.++||++++ |+++|+|+.+||+.+
T Consensus        62 ~~~~~v~~im~~~--~~~v~~~~~~~-~a~~~m~~~~~~~lPVVd~~-g~lvGiIt~~Dil~~  120 (144)
T d2yvxa2          62 DPRTRVAEIMNPK--VVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDV  120 (144)
T ss_dssp             CTTCBSTTTSBSS--CCCEESSCCHH-HHHHHHHHSCCSEEEEECSS-CBEEEEEEHHHHHHH
T ss_pred             ccccchHHhcccC--CccCCCCChHH-HHHHHHHHcCCCEEEEEeEC-CEEEEEEEHHHHHHH
Confidence            4578899999965  78899999999 99999999999999999875 899999999999753

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.87  E-value=1.1e-05  Score=66.13  Aligned_cols=59  Identities=20%  Similarity=0.158  Sum_probs=51.3

Q ss_pred             cchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847         108 TPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ  178 (396)
Q Consensus       108 ~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~  178 (396)
                      .|++++|   .+++.++.+++++.++++.|.++ +.+.++|+        |+.|+++|+||..||+..+..
T Consensus         5 ~pV~~im---~~~~~~v~~~~t~~~a~~~m~~~-~~~~~~Vv--------d~~~~~~Giit~~di~~~~~~   63 (132)
T d2yzia1           5 APIKVYM---TKKLLGVKPSTSVQEASRLMMEF-DVGSLVVI--------NDDGNVVGFFTKSDIIRRVIV   63 (132)
T ss_dssp             SBGGGTC---BCCCCEECTTSBHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHHHHTTT
T ss_pred             CcHHHHc---CCCCeEECCcCcHHHHHHHHHHc-CCcEEEEe--------cccceeeeeeeHHHHHHHHhh
Confidence            3677776   48999999999999999999996 67777777        888999999999999998763

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=97.82  E-value=1.1e-05  Score=66.64  Aligned_cols=61  Identities=16%  Similarity=0.179  Sum_probs=53.4

Q ss_pred             chhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847         109 PLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ  178 (396)
Q Consensus       109 ~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~  178 (396)
                      .+++++++|..++++|.+++++.++++.|.++ +.+.++|+        |+.|+++|+||..||+..+..
T Consensus         2 k~~~v~~~m~~~p~~v~~~~~v~~a~~~m~~~-~~~~ipVv--------d~~~~~vGiis~~Dl~~~~~~   62 (145)
T d1o50a3           2 KVKDVCKLISLKPTVVEEDTPIEEIVDRILED-PVTRTVYV--------ARDNKLVGMIPVMHLLKVSGF   62 (145)
T ss_dssp             BHHHHTTSSCCCCEEECTTCBHHHHHHHHHHS-TTCCEEEE--------EETTEEEEEEEHHHHHHHHHH
T ss_pred             cceEhHHhCCCCCEEECCcCcHHHHHHHHHHc-CCceEEEe--------ccCcceeeeeccchhhhhhhc
Confidence            46778888888999999999999999999995 77777777        777999999999999998863

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.81  E-value=1e-05  Score=65.86  Aligned_cols=75  Identities=13%  Similarity=0.216  Sum_probs=58.1

Q ss_pred             cCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        23 ~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .|.++..+......-=...+.+++++|.+.  +++++.++++. ++++.|.+++.+++||++++ |+++|+|+..||+.
T Consensus        47 ~Givt~~dl~~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~lvGiit~~Dll~  121 (127)
T d2ef7a1          47 VGIITERDIVKAIGKGKSLETKAEEFMTAS--LITIREDSPIT-GALALMRQFNIRHLPVVDDK-GNLKGIISIRDITR  121 (127)
T ss_dssp             EEEEEHHHHHHHHHTTCCTTCBGGGTSEEC--CCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHH
T ss_pred             hhhcchhHHHHHHHhhccccchhhhhhhhh--ccccccccchh-HHHHHHHHcCceEEEEEeCC-CeEEEEEEHHHHHH
Confidence            355565554321111123467899999864  78999999999 99999999999999999765 89999999999975

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.78  E-value=4e-06  Score=68.01  Aligned_cols=74  Identities=18%  Similarity=0.333  Sum_probs=45.2

Q ss_pred             CCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          24 NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        24 ~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      |-++..+....  .-.-.+.++..+|+...+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+||+.
T Consensus        44 GivT~~Di~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~a~~~m~~~~i~~lpVVd~~-~~lvGiiT~~Di~k  117 (120)
T d1jr1a4          44 GIISSRDIDFL--KEEEHDRFLEEIMTKREDLVVAPAGITLK-EANEILQRSKKGKLPIVNEN-DELVAIIARTDLKK  117 (120)
T ss_dssp             ------------------------CCSBTTTSCCEETTCCHH-HHHHHTCSCC---CEEEETT-TEEEEEECHHHHHH
T ss_pred             eeeeeeeeeeh--hccccCceeEEEEeeccCceEECCCCCHH-HHHHHHHHcCccEEEEEcCC-CEEEEEEEHHHhhh
Confidence            55665554321  11233678889998888899999999999 99999999999999999876 89999999999974

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.78  E-value=1.1e-05  Score=65.04  Aligned_cols=76  Identities=21%  Similarity=0.204  Sum_probs=60.5

Q ss_pred             cccCCCCHHHHH-HHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhh
Q psy4847          21 TEFNDLEKDEVN-IISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL   99 (396)
Q Consensus        21 ~e~~~l~~~E~~-~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDL   99 (396)
                      ...|-++..+.. .+..-..+.+.+|+++|++.  +.++++++++. +++..|.+++..++||.++  |+++|+|+.+|+
T Consensus        41 ~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~~--~~~v~~~~~l~-~a~~~m~~~~~~~l~V~~~--~~l~Givt~~Di  115 (120)
T d1pbja3          41 VRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERD--LVTISPRATIK-EAAEKMVKNVVWRLLVEED--DEIIGVISATDI  115 (120)
T ss_dssp             EEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCG--GGEECTTSCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHH
T ss_pred             cEEEEEEeeeccccccccccccceeEeeecccc--cccccchhHHH-HHHHHHHHcCCeEEEEEEC--CEEEEEEEHHHH
Confidence            344555555543 34444456788999999864  78899999999 9999999999999999864  799999999999


Q ss_pred             cc
Q psy4847         100 AL  101 (396)
Q Consensus       100 l~  101 (396)
                      +.
T Consensus       116 l~  117 (120)
T d1pbja3         116 LR  117 (120)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.73  E-value=2.4e-05  Score=63.67  Aligned_cols=57  Identities=19%  Similarity=0.380  Sum_probs=51.1

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ..+.+|+++|++.  +.++.+++++. ++++.|.+.+.+++||+++  |+++|+|+.+||+.
T Consensus        67 ~~~~~v~~im~~~--~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--~~~~GiIt~~Dil~  123 (127)
T d2rc3a1          67 VKDTQVKEIMTRQ--VAYVDLNNTNE-DCMALITEMRVRHLPVLDD--GKVIGLLSIGDLVK  123 (127)
T ss_dssp             GGGSBGGGTSBCS--CCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHH
T ss_pred             ccceeEeeeccce--eEEeccCccHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHH
Confidence            3467899999964  78999999999 9999999999999999974  79999999999974

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.72  E-value=1.6e-05  Score=64.31  Aligned_cols=58  Identities=12%  Similarity=0.230  Sum_probs=47.0

Q ss_pred             ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ..+..+.++|++.  +++++.++++. +++..|.+++..++||++++ ++++|+|+.+|++.
T Consensus        57 ~~~~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~-~~liGiit~~dil~  114 (122)
T d2yzqa2          57 PDEEQLAMLVKRD--VPVVKENDTLK-KAAKLMLEYDYRRVVVVDSK-GKPVGILTVGDIIR  114 (122)
T ss_dssp             -------CCCBSC--CCEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHH
T ss_pred             hcccchhhccccc--eeecchhhHHH-HHHHHHHHcCcEEEEEEeCC-CEEEEEEEHHHHHH
Confidence            4567899999865  78999999999 99999999999999999865 89999999999974

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=97.63  E-value=3.2e-05  Score=64.30  Aligned_cols=61  Identities=11%  Similarity=0.061  Sum_probs=52.9

Q ss_pred             HHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          36 GALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        36 ~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .........++++|.+.  ++++++++++. ++++.|.+.|+.++||.++  |+++|+|+.+||+.
T Consensus        96 ~~~~~~~~~~~~~~~~~--~~tv~~~~~l~-~~~~~m~~~~v~~l~V~d~--g~lvGiIt~~Di~k  156 (160)
T d2d4za3          96 REKNVVVNFETCRIDQS--PFQLVEGTSLQ-KTHTLFSLLGLDRAYVTSM--GKLVGVVALAEIQA  156 (160)
T ss_dssp             HHTTCBCCTTSSCEECC--SCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHH
T ss_pred             hhcccccceeeecccCC--CEEEcCCCCHH-HHHHHHHHcCCeEEEEEEC--CEEEEEEEHHHHHH
Confidence            34446677788999875  78899999999 9999999999999999874  79999999999975

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.60  E-value=3.9e-05  Score=62.25  Aligned_cols=72  Identities=11%  Similarity=0.187  Sum_probs=54.6

Q ss_pred             CCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847          24 NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV  102 (396)
Q Consensus        24 ~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~  102 (396)
                      |.++..+.   ..+.... ..+.+.|... .+++++.++++. ++++.|.+++++++||++++ |+++|+|+.+||+.+
T Consensus        44 Givt~~Di---~~~~~~~-~~~~~~~~~~-~~~~~~~~~~l~-~a~~~m~~~~~~~lpVVd~~-g~lvGiiT~~Dil~~  115 (126)
T d1zfja4          44 GIITNRDM---RFISDYN-APISEHMTSE-HLVTAAVGTDLE-TAERILHEHRIEKLPLVDNS-GRLSGLITIKDIEKV  115 (126)
T ss_dssp             EEEEHHHH---HHCSCSS-SBTTTSCCCS-CCCCEETTCCHH-HHHHHHHHTTCSEEEEECTT-SBEEEEEEHHHHHHH
T ss_pred             EEeEHHHH---HHhhccC-Cceeeeeecc-ceeecCCCCCHH-HHHHHHHhcCCcEEEEEcCC-CeEEEEEEHHHHHHH
Confidence            55665553   3444444 4444555443 467899999999 99999999999999999765 899999999999753

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=3.5e-05  Score=65.51  Aligned_cols=55  Identities=11%  Similarity=0.118  Sum_probs=49.7

Q ss_pred             ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      ..+|+++|++.  ++++++++++. ++++.|.+.+..++||.++  |+++|+|+.+||+.
T Consensus        99 ~~~v~~im~~~--~~tv~~~~~l~-~v~~~~~~~~~~~l~V~d~--g~lvGiIt~~Dil~  153 (169)
T d2j9la1          99 TLKLRNILDLS--PFTVTDLTPME-IVVDIFRKLGLRQCLVTHN--GRLLGIITKKDVLK  153 (169)
T ss_dssp             CEECGGGEESS--CCEEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHH
T ss_pred             ccchhhhccCC--CEEECCCCcHH-HHHHHHHhcCceEEEEEEC--CEEEEEEEHHHHHH
Confidence            56699999975  78999999999 9999999999999999875  78999999999975

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=97.52  E-value=4.2e-05  Score=63.03  Aligned_cols=57  Identities=9%  Similarity=0.076  Sum_probs=47.9

Q ss_pred             chhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847         109 PLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI  177 (396)
Q Consensus       109 ~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli  177 (396)
                      .++++|   .++++++.+++++.+|++.|+++ +.+-++|+        |+.|+++|+||..|++..+.
T Consensus         3 ~v~diM---~~~~~~v~~~~tl~~a~~~m~~~-~~~~lpVv--------d~~~~~~Giit~~dl~~~~~   59 (139)
T d2o16a3           3 KVEDMM---TRHPHTLLRTHTLNDAKHLMEAL-DIRHVPIV--------DANKKLLGIVSQRDLLAAQE   59 (139)
T ss_dssp             BGGGTS---EESCCCBCTTSBHHHHHHHHHHH-TCSEEEEE--------CTTCBEEEEEEHHHHHHHHH
T ss_pred             EHHHhC---cCCCeEECCcCCHHHHHHHHHHc-CCCeeeee--------cccccccccccHHHHHHHHH
Confidence            345555   47889999999999999999996 56666666        88899999999999999876

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.50  E-value=7.2e-05  Score=61.23  Aligned_cols=58  Identities=21%  Similarity=0.295  Sum_probs=49.7

Q ss_pred             chhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847         109 PLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ  178 (396)
Q Consensus       109 ~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~  178 (396)
                      |++++|   .+++.+|++++++.+|++.|.++ +.+.++|+        |+.++++|++|..|++..+..
T Consensus         3 ~V~~iM---t~~v~~v~~~~tl~~a~~~m~~~-~~~~ipVv--------~~~~~~~g~i~~~di~~~~~~   60 (141)
T d3ddja1           3 PVKVFM---STKVQTIYKEVRLDQAVKLMLRR-GFRRLPVI--------DDDNKVVGIVTVVNAIKQLAK   60 (141)
T ss_dssp             BHHHHS---BCSCCCEETTSBHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHHHHHHH
T ss_pred             eeHHhC---cCCCeEEcCcCcHHHHHHHHHHc-CCCeeecc--------cccCccccccccccchhhhhc
Confidence            566666   47899999999999999999996 56666677        888999999999999988864

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.44  E-value=9.2e-05  Score=60.81  Aligned_cols=61  Identities=13%  Similarity=0.073  Sum_probs=49.9

Q ss_pred             chhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847         109 PLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ  178 (396)
Q Consensus       109 ~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~  178 (396)
                      |+.++.-.+..++.+|.+++++.+|++.|.+. +...++|+        |+.|+++|+||..|++..+..
T Consensus         7 ~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~-~~~~ipVv--------d~~~~~vG~it~~Di~~~~~~   67 (140)
T d2nyca1           7 PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQG-RVSSVPII--------DENGYLINVYEAYDVLGLIKG   67 (140)
T ss_dssp             BGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHH-TCSEEEEE--------CTTCBEEEEEEHHHHHHHHHT
T ss_pred             cHHHhCCccCCCCEEEcCcCcHHHHHHHHHHc-CCcEEEEE--------ecCCeEcceehhhHHHHHHhh
Confidence            45555333457899999999999999999886 56666666        888999999999999999874

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.41  E-value=3.5e-05  Score=64.52  Aligned_cols=55  Identities=20%  Similarity=0.230  Sum_probs=48.7

Q ss_pred             ccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          44 IVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        44 tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .+.++|++.  ++++++++++. ++++.|.++|..|+||++++.|+++|+|+.+||+.
T Consensus        97 ~~~~~~~~~--~~~v~~~~~l~-~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk  151 (159)
T d2v8qe2          97 VYLQDSFKP--LVCISPNASLF-DAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILK  151 (159)
T ss_dssp             HHSSSSCCC--CCCBCTTSBHH-HHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHH
T ss_pred             eeeeeeccc--eEEECCCCcHH-HHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHH
Confidence            446788764  88999999999 99999999999999999866689999999999974

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=97.37  E-value=9.9e-05  Score=60.07  Aligned_cols=60  Identities=17%  Similarity=0.151  Sum_probs=48.9

Q ss_pred             chhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847         109 PLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ  178 (396)
Q Consensus       109 ~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~  178 (396)
                      +++++|-. ..++.+|.+++++.+|++.|.+. +..-++|+        |+.|+++|+||..||+..+.+
T Consensus         3 tv~~~mip-~~~v~~v~~~~tl~~a~~~m~~~-~~s~~pVv--------d~~~~~vGiit~~di~~~~~~   62 (132)
T d1yava3           3 TVGQFMIE-ADKVAHVQVGNNLEHALLVLTKT-GYTAIPVL--------DPSYRLHGLIGTNMIMNSIFG   62 (132)
T ss_dssp             BHHHHSEE-GGGSCCEETTCBHHHHHHHHHHH-CCSEEEEE--------CTTCBEEEEEEHHHHHHHHBC
T ss_pred             CHHHcccc-ccceEEEcCCCCHHHHHHHHHhh-CCCceEEe--------ecccccccEEEcchhHHHhhc
Confidence            45555522 36789999999999999999986 55666666        888999999999999999873

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=97.35  E-value=7.6e-05  Score=60.01  Aligned_cols=52  Identities=17%  Similarity=0.231  Sum_probs=44.6

Q ss_pred             hhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847         114 CQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE  174 (396)
Q Consensus       114 ~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE  174 (396)
                      .++|.++++.|.+++++.++++.|.+. +.+.++|+        |+.|+++|+||..|++.
T Consensus         4 ~~~m~~~~~~v~~~~tv~ea~~~m~~~-~~~~v~Vv--------d~~~~~~Gii~~~dl~~   55 (121)
T d1vr9a3           4 KKWVTQDFPMVEESATVRECLHRMRQY-QTNECIVK--------DREGHFRGVVNKEDLLD   55 (121)
T ss_dssp             GGGCBSCSCEEETTCBHHHHHHHHHHT-TSSEEEEE--------CTTSBEEEEEEGGGGTT
T ss_pred             hhhhcCCCeEECCCCCHHHHHHhhhhc-CcEEEEEE--------eCCceeEEEeehhhhhh
Confidence            344568999999999999999999996 66777777        88899999999999864

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.20  E-value=0.00032  Score=56.59  Aligned_cols=54  Identities=9%  Similarity=0.127  Sum_probs=45.3

Q ss_pred             ccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          44 IVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        44 tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      .....|++  +.+++.+++++. ++++.|.+++.+++||++++ |+++|+|+..||+.
T Consensus        67 ~~~~~~~~--~~~~v~~~~~~~-~a~~~m~~~~i~~lpVvd~~-g~l~Giit~~Dll~  120 (131)
T d2riha1          67 GPAMPIAN--SPITVLDTDPVH-VAAEKMRRHNIRHVVVVNKN-GELVGVLSIRDLCF  120 (131)
T ss_dssp             SBSGGGCB--CCCEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHS
T ss_pred             cccccccc--cceeEeeecchH-HHHHHHHHCCeEEEEEEcCC-CeEEEEEEHHHHHH
Confidence            34444443  367899999999 99999999999999999765 89999999999985

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.03  E-value=0.0003  Score=58.53  Aligned_cols=51  Identities=10%  Similarity=-0.005  Sum_probs=44.8

Q ss_pred             CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847         119 NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ  178 (396)
Q Consensus       119 ~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~  178 (396)
                      .++.+|.+++++.+|++.|.++ +...++|+        |+.|+++|+||..||+..+..
T Consensus        12 ~~vv~v~~~~~v~~a~~~m~~~-~~~~lpVv--------d~~~~~vG~it~~Dl~~~~~~   62 (153)
T d2ooxe2          12 SNLATASMETKVYDVIKMLAEK-NISAVPIV--------NSEGTLLNVYESVDVMHLIQD   62 (153)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHT-TCSEEEEE--------CGGGBEEEEEEHHHHHHHHGG
T ss_pred             CCCeEEeCcCcHHHHHHHHHHc-CcceEeee--------cccceEEEEEEeeeeeehhcc
Confidence            5788999999999999999996 66667777        888999999999999998863

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.99  E-value=0.0004  Score=56.96  Aligned_cols=53  Identities=9%  Similarity=0.180  Sum_probs=44.8

Q ss_pred             cccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847          45 VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL  101 (396)
Q Consensus        45 V~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~  101 (396)
                      +...|.+  +++++..++++. ++++.|.+++..++||++++ |+++|+|+..||+.
T Consensus        86 ~~~~~~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-g~l~GiVt~~dii~  138 (145)
T d2v8qe1          86 HRSHYFE--GVLKCYLHETLE-AIINRLVEAEVHRLVVVDEH-DVVKGIVSLSDILQ  138 (145)
T ss_dssp             GCCSCCC--SCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHH
T ss_pred             hhhhccC--CCeEECCCCcHH-HHHHHHHHcCceEEEEEccC-CEEEEEEEHHHHHH
Confidence            3444554  367899999999 99999999999999999765 89999999999974

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.59  E-value=0.00068  Score=57.40  Aligned_cols=56  Identities=14%  Similarity=0.052  Sum_probs=46.7

Q ss_pred             ccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC----CCcEEEEEEhhhhccc
Q psy4847          44 IVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR----RTNIVTMFYIKDLALV  102 (396)
Q Consensus        44 tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~----~~~IVGiL~vkDLl~~  102 (396)
                      .+..+|.+.  ++++++++++. +++..|.++++.|+||++.+    .++++|+|+.+||+..
T Consensus       108 ~~~~~~~~~--~i~v~~~~sl~-~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~  167 (179)
T d2ooxe1         108 RKIGAIPPE--TIYVHPMHSLM-DACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKF  167 (179)
T ss_dssp             HHTTCSCSS--CCCBCTTSBHH-HHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHH
T ss_pred             eeeeecccC--ceEECCCCcHH-HHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHH
Confidence            355567754  78999999999 99999999999999999743    2369999999999853