Psyllid ID: psy4876
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 609 | 2.2.26 [Sep-21-2011] | |||||||
| Q12834 | 499 | Cell division cycle prote | yes | N/A | 0.576 | 0.703 | 0.547 | 1e-120 | |
| Q5H7C0 | 499 | Cell division cycle prote | yes | N/A | 0.576 | 0.703 | 0.550 | 1e-120 | |
| Q9JJ66 | 499 | Cell division cycle prote | yes | N/A | 0.576 | 0.703 | 0.539 | 1e-118 | |
| Q62623 | 499 | Cell division cycle prote | yes | N/A | 0.576 | 0.703 | 0.539 | 1e-117 | |
| Q54MZ3 | 499 | Anaphase-promoting comple | yes | N/A | 0.523 | 0.639 | 0.509 | 1e-102 | |
| Q8L3Z8 | 483 | Protein FIZZY-RELATED 2 O | no | N/A | 0.525 | 0.662 | 0.495 | 1e-92 | |
| Q8LPL5 | 481 | Protein FIZZY-RELATED 3 O | no | N/A | 0.490 | 0.621 | 0.515 | 3e-90 | |
| Q8VZS9 | 475 | Protein FIZZY-RELATED 1 O | no | N/A | 0.546 | 0.701 | 0.482 | 4e-89 | |
| Q9UM11 | 496 | Fizzy-related protein hom | no | N/A | 0.559 | 0.687 | 0.474 | 2e-85 | |
| Q9R1K5 | 493 | Fizzy-related protein hom | no | N/A | 0.536 | 0.663 | 0.483 | 2e-85 |
| >sp|Q12834|CDC20_HUMAN Cell division cycle protein 20 homolog OS=Homo sapiens GN=CDC20 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 432 bits (1110), Expect = e-120, Method: Compositional matrix adjust.
Identities = 207/378 (54%), Positives = 263/378 (69%), Gaps = 27/378 (7%)
Query: 233 IKILSNTSKTPMGSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIY 292
+K+L + TP S+ T RYIP DRILDAPEI+NDYYLNL+DWS NVLAVAL S+Y
Sbjct: 148 LKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVY 207
Query: 293 LWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGV 352
LW+ S + + + P E + SVAWI+EG L V
Sbjct: 208 LWSASSGDILQLLQMEQP------------------------GEYISSVAWIKEGNYLAV 243
Query: 353 GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVA 412
GTS VQLWDV +K+ R M H RVG+L+WN+YILSSGSR G+I HHDVR +H VA
Sbjct: 244 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA 303
Query: 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI 472
L H+QEVCGL+W+PDGR+LASGGNDNL+N+W PG+ + P+ + ++HQ AVKA+
Sbjct: 304 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV--PLQTFTQHQGAVKAV 361
Query: 473 AWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFA 532
AWCPW NVLA+GGGT+DRHI WNV SGACL ++D SQVC++LW+ YKEL+S HGFA
Sbjct: 362 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 421
Query: 533 QNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKK 592
QNQL+IWKYP++ KVAEL GH++RVL+L MSPD TV SA ADETLRLW+ FE ++++
Sbjct: 422 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRR 481
Query: 593 EI-KNNASKFNSMFNSIR 609
E K +A+K + + IR
Sbjct: 482 EREKASAAKSSLIHQGIR 499
|
Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation. Homo sapiens (taxid: 9606) |
| >sp|Q5H7C0|CDC20_PIG Cell division cycle protein 20 homolog OS=Sus scrofa GN=CDC20 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 431 bits (1109), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/378 (55%), Positives = 262/378 (69%), Gaps = 27/378 (7%)
Query: 233 IKILSNTSKTPMGSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIY 292
+K+L + TP S+ T RYIP DRILDAPEI+NDYYLNL+DWS NVLAVAL S+Y
Sbjct: 148 LKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVY 207
Query: 293 LWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGV 352
LW+ S + + + P + V SVAWI+EG L V
Sbjct: 208 LWSASSGDILQLLQMEQP------------------------GDYVSSVAWIKEGNYLAV 243
Query: 353 GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVA 412
GTS VQLWDV +K+ R M H RVG+L WN+YILSSGSR G+I HHDVR +H VA
Sbjct: 244 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNSYILSSGSRSGHIHHHDVRVAEHHVA 303
Query: 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI 472
L H+QEVCGL+W+PDGR+LASGGNDNL+N+W PG+ + P+ + ++HQ AVKA+
Sbjct: 304 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV--PLQTFTQHQGAVKAV 361
Query: 473 AWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFA 532
AWCPW NVLA+GGGT+DRHI WNV SGACL ++D SQVC++LW+ YKEL+S HGFA
Sbjct: 362 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 421
Query: 533 QNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKK 592
QNQL+IWKYP++ KVAEL GH+ARVL+L MSPD TV SA ADETLRLW+ FE ++++
Sbjct: 422 QNQLVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADETLRLWRCFELDPARRR 481
Query: 593 EI-KNNASKFNSMFNSIR 609
E K +A+K + + IR
Sbjct: 482 EREKASAAKSSLIHQGIR 499
|
Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation. Sus scrofa (taxid: 9823) |
| >sp|Q9JJ66|CDC20_MOUSE Cell division cycle protein 20 homolog OS=Mus musculus GN=Cdc20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 425 bits (1092), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/378 (53%), Positives = 260/378 (68%), Gaps = 27/378 (7%)
Query: 233 IKILSNTSKTPMGSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIY 292
+K+L + TP S+ T RYIP DRILDAPEI+NDYYLNL+DWS NVLAVAL S+Y
Sbjct: 148 LKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVY 207
Query: 293 LWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGV 352
LWN S + + + P + + SVAWI+EG L V
Sbjct: 208 LWNAGSGDILQLLQMEQP------------------------GDYISSVAWIKEGNYLAV 243
Query: 353 GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVA 412
GTS VQLWDV +K+ R M H RV +L+WN+YILSSGSR G+I HHDVR +H VA
Sbjct: 244 GTSNAEVQLWDVQQQKRLRNMTSHSARVSSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA 303
Query: 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI 472
L H+QEVCGL+W+PDGR+LASGGNDN++N+W PG+ ++ P+ + ++HQ AVKA+
Sbjct: 304 TLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGESGWA--PLQTFTQHQGAVKAV 361
Query: 473 AWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFA 532
AWCPW N+LA+GGGT+DRHI WNV SGACL ++D SQVC++LW+ YKEL+S HGFA
Sbjct: 362 AWCPWQSNILATGGGTSDRHIRIWNVCSGACLSAVDVHSQVCSILWSPHYKELISGHGFA 421
Query: 533 QNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKK 592
QNQL+IWKYP++ KVAEL GH+ARVL L MSPD TV SA ADETLRLW+ FE + ++
Sbjct: 422 QNQLVIWKYPTMAKVAELKGHTARVLGLTMSPDGATVASAAADETLRLWRCFEMDPALRR 481
Query: 593 EI-KNNASKFNSMFNSIR 609
E K + +K + + IR
Sbjct: 482 EREKASVAKSSLIHQGIR 499
|
Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation. Mus musculus (taxid: 10090) |
| >sp|Q62623|CDC20_RAT Cell division cycle protein 20 homolog OS=Rattus norvegicus GN=Cdc20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 422 bits (1085), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/378 (53%), Positives = 259/378 (68%), Gaps = 27/378 (7%)
Query: 233 IKILSNTSKTPMGSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIY 292
+K+L + TP S+ RYIP DRILDAPEI+NDYYLNL+DWS NVLAVAL S+Y
Sbjct: 148 LKVLYSQKATPGSSRKACRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVY 207
Query: 293 LWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGV 352
LWN S + + + P + + SVAWI+EG L V
Sbjct: 208 LWNAGSGDILQLLQMEQP------------------------GDYISSVAWIKEGNYLAV 243
Query: 353 GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVA 412
GTS VQLWDV +K+ R M H RV +L+WN+YILSSGSR G+I HHDVR +H VA
Sbjct: 244 GTSNAEVQLWDVQQQKRLRNMTSHSARVSSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA 303
Query: 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI 472
L H+QEVCGL+W+PDGR+LASGGNDN++N+W PG+ + P+ + ++HQ AVKA+
Sbjct: 304 TLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGESGWV--PLQTFTQHQGAVKAV 361
Query: 473 AWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFA 532
AWCPW N+LA+GGGT+DRHI WNV SGACL ++D SQVC++LW+ YKEL+S HGFA
Sbjct: 362 AWCPWQSNILATGGGTSDRHIRIWNVCSGACLSAVDVHSQVCSILWSPHYKELISGHGFA 421
Query: 533 QNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKK 592
QNQL+IWKYP++ KVAEL GH+ARVL+L MSPD TV SA ADETLRLW+ FE + ++
Sbjct: 422 QNQLVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADETLRLWRCFELDPALRR 481
Query: 593 EI-KNNASKFNSMFNSIR 609
E K + SK + + IR
Sbjct: 482 EREKASTSKSSLIHQGIR 499
|
Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation (By similarity). Interacts with NEK2. Rattus norvegicus (taxid: 10116) |
| >sp|Q54MZ3|CDC20_DICDI Anaphase-promoting complex subunit cdc20 OS=Dictyostelium discoideum GN=cdc20 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/355 (50%), Positives = 238/355 (67%), Gaps = 36/355 (10%)
Query: 240 SKTPMGSKPTS-------RYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIY 292
S+ +GS PT R IP +RILDAP+I +DYYLNL+DWS NV+A+ LG ++Y
Sbjct: 145 SQNQVGSTPTDQSLKKQFRQIPQQPERILDAPDIVDDYYLNLLDWSSQNVIAIPLGQTVY 204
Query: 293 LWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNEN-VCSVAWIQEGYMLG 351
LWN + I L +E ++ + S+ W ++G L
Sbjct: 205 LWNATTSE-------------------------IQRLFQVEQQDDYITSLQWTKDGNYLA 239
Query: 352 VGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKV 411
VGT+ T+QLWDV+ KK R + GH RVGALAWN YILSSGS NI +HDVR ++H V
Sbjct: 240 VGTNSCTIQLWDVAHTKKVRELRGHAGRVGALAWNDYILSSGSSDTNIFNHDVRVQNHHV 299
Query: 412 ALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKA 471
+ L H+QEVCGLKWS DG LASGGNDN++NIW F T P H+ +H AAV+A
Sbjct: 300 STLSGHSQEVCGLKWSHDGGQLASGGNDNIINIWD--INSENFET-PAHTFEQHTAAVRA 356
Query: 472 IAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGF 531
+AWCP+ PN+LA+GGG ADR I FWN +G CL+++DT SQVC++ W++ Y+ELVS+HG+
Sbjct: 357 LAWCPFQPNLLATGGGAADRTIRFWNTITGVCLNTVDTMSQVCSIQWSTTYRELVSSHGY 416
Query: 532 AQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586
+QNQL +WKYPS+VK AEL GH++R L+ A+SPD TV+SA ADETLR W++FEK
Sbjct: 417 SQNQLCVWKYPSMVKCAELTGHTSRALHTAISPDGETVVSASADETLRFWRVFEK 471
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q8L3Z8|FZR2_ARATH Protein FIZZY-RELATED 2 OS=Arabidopsis thaliana GN=FZR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 341 bits (874), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 174/351 (49%), Positives = 224/351 (63%), Gaps = 31/351 (8%)
Query: 251 RYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSP 310
R +P + ++LDAP +Q+D+YLNL+DWS NVLAV LG +YLWN C S
Sbjct: 158 RKVPRSPYKVLDAPALQDDFYLNLVDWSAQNVLAVGLGNCVYLWNA----------CSSK 207
Query: 311 LVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKC 370
+ + L DL ++VCSV W G L VGTS G VQ+WD S K+
Sbjct: 208 VTK---------------LCDLGAEDSVCSVGWALRGTHLAVGTSTGKVQIWDASRCKRT 252
Query: 371 RTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDG 430
RTM+GH +RVGALAW + +LSSGSR +I+ D+R ++ V+ L H EVCGLKWS D
Sbjct: 253 RTMEGHRLRVGALAWGSSVLSSGSRDKSILQRDIRCQEDHVSKLAGHKSEVCGLKWSYDN 312
Query: 431 RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD 490
R LASGGNDN L +W+ QH STQP+ S H AAVKAIAW P +LASGGGTAD
Sbjct: 313 RELASGGNDNRLFVWN----QH--STQPVLKYSEHTAAVKAIAWSPHVHGLLASGGGTAD 366
Query: 491 RHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL 550
R I FWN ++ L SIDT SQVC L W+ + ELVS HG++QNQ+I+WKYP++ K+A L
Sbjct: 367 RCIRFWNTTTNTHLSSIDTCSQVCNLAWSKNVNELVSTHGYSQNQIIVWKYPTMSKIATL 426
Query: 551 HGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEIKNNASKF 601
GH+ RVL LA+SPD T+++ DETLR W +F KS+ + + +S F
Sbjct: 427 TGHTYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEIGSSFF 477
|
Activator protein that regulates the ubiquitin ligase activity and substrate specificity of the anaphase promoting complex/cyclosome (APC/C). Necessary and sufficient for endoreduplication and correct cell expansion. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPL5|FZR3_ARATH Protein FIZZY-RELATED 3 OS=Arabidopsis thaliana GN=FZR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (854), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 170/330 (51%), Positives = 213/330 (64%), Gaps = 31/330 (9%)
Query: 259 RILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSK 318
++LDAP +Q+D+YLN++DWS NVLAV LG +YLW SNSK
Sbjct: 164 KVLDAPSLQDDFYLNVVDWSSQNVLAVGLGTCVYLWTA---SNSK--------------- 205
Query: 319 CIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDV 378
+ L DL N++VCSV W +EG + +GTS G VQ+WD + K+ RTM GH
Sbjct: 206 -------VTKLCDLGPNDSVCSVQWTREGSYISIGTSHGQVQVWDGTQCKRVRTMGGHQT 258
Query: 379 RVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGN 438
R G LAWN+ ILSSGSR NI+ HD+R + V+ L H EVCGLKWS D R LASGGN
Sbjct: 259 RTGVLAWNSRILSSGSRDRNILQHDIRVQSDFVSKLVGHKSEVCGLKWSHDDRELASGGN 318
Query: 439 DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV 498
DN L +W + S QPI L+ H AAVKAI W P ++LASGGGTADR I FWN
Sbjct: 319 DNQLLVW------NNHSQQPILKLTEHTAAVKAITWSPHQSSLLASGGGTADRCIRFWNT 372
Query: 499 SSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVL 558
++G L+SIDT SQVC L W+ + E+VS HG++QNQ+++WKYPS+ KVA L GHS RVL
Sbjct: 373 TNGNQLNSIDTGSQVCNLAWSKNVNEIVSTHGYSQNQIMLWKYPSMSKVATLTGHSMRVL 432
Query: 559 NLAMSPDETTVLSAGADETLRLWKIFEKVK 588
LA SPD T+++ DETLR W +F VK
Sbjct: 433 YLATSPDGQTIVTGAGDETLRFWNVFPSVK 462
|
Activator protein that regulates the ubiquitin ligase activity and substrate specificity of the anaphase promoting complex/cyclosome (APC/C). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZS9|FZR1_ARATH Protein FIZZY-RELATED 1 OS=Arabidopsis thaliana GN=FZR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 329 bits (843), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 177/367 (48%), Positives = 234/367 (63%), Gaps = 34/367 (9%)
Query: 235 ILSNTSKTPMGSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLW 294
++S S +P+ S R I + ++LDAP +Q+D+YLNL+DWS NVLAV LG +YLW
Sbjct: 137 VVSGVSPSPVKSP---RKILRSPYKVLDAPALQDDFYLNLVDWSAQNVLAVGLGNCVYLW 193
Query: 295 NGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGT 354
N C S + + L DL +E VCSV W G L +GT
Sbjct: 194 NA----------CSSKVTK---------------LCDLGVDETVCSVGWALRGTHLAIGT 228
Query: 355 SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALL 414
S GTVQ+WDV K RTM+GH +RVGALAW++ +LSSGSR +I+ D+R+++ V+ L
Sbjct: 229 SSGTVQIWDVLRCKNIRTMEGHRLRVGALAWSSSVLSSGSRDKSILQRDIRTQEDHVSKL 288
Query: 415 QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAW 474
+ H E+CGLKWS D R LASGGNDN L +W+ QH STQP+ H AAVKAIAW
Sbjct: 289 KGHKSEICGLKWSSDNRELASGGNDNKLFVWN----QH--STQPVLRFCEHAAAVKAIAW 342
Query: 475 CPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQN 534
P +LASGGGTADR I FWN ++ L+ +DT SQVC L+W+ + ELVS HG++QN
Sbjct: 343 SPHHFGLLASGGGTADRCIRFWNTTTNTHLNCVDTNSQVCNLVWSKNVNELVSTHGYSQN 402
Query: 535 QLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594
Q+I+WKYP++ K+A L GHS RVL LA+SPD T+++ DETLR W +F KS+ +E
Sbjct: 403 QIIVWKYPTMSKLATLTGHSYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPKSQSRES 462
Query: 595 KNNASKF 601
+ A F
Sbjct: 463 EIGALSF 469
|
Activator protein that regulates the ubiquitin ligase activity and substrate specificity of the anaphase promoting complex/cyclosome (APC/C). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9UM11|FZR_HUMAN Fizzy-related protein homolog OS=Homo sapiens GN=FZR1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 317 bits (812), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 179/377 (47%), Positives = 230/377 (61%), Gaps = 36/377 (9%)
Query: 236 LSNTSKTPMGS--KPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYL 293
+SN S+ + S KPT R I ++LDAPE+Q+D+YLNL+DWS NVL+V LG +YL
Sbjct: 153 VSNKSQKLLRSPRKPT-RKISKIPFKVLDAPELQDDFYLNLVDWSSLNVLSVGLGTCVYL 211
Query: 294 WNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVG 353
W+ C S Q R D + +EG ++V SV W + G ++ VG
Sbjct: 212 WSA----------CTS-----------QVTRLCD--LSVEG-DSVTSVGWSERGNLVAVG 247
Query: 354 TSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRD-HKVA 412
T G VQ+WD +A KK ++GH RVGALAWN LSSGSR I+ D+R+
Sbjct: 248 THKGFVQIWDAAAGKKLSMLEGHTARVGALAWNAEQLSSGSRDRMILQRDIRTPPLQSER 307
Query: 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI 472
LQ H QEVCGLKWS D + LASGGNDN L +W+ H+ S P+ + H AAVKAI
Sbjct: 308 RLQGHRQEVCGLKWSTDHQLLASGGNDNKLLVWN-----HS-SLSPVQQYTEHLAAVKAI 361
Query: 473 AWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFA 532
AW P +LASGGGTADR I FWN +G L IDT SQVC L W+ ELVS HG++
Sbjct: 362 AWSPHQHGLLASGGGTADRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYS 421
Query: 533 QNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKK 592
QNQ+++WKYPSL +VA+L GHS RVL LAMSPD +++ DETLR W +F K +S K
Sbjct: 422 QNQILVWKYPSLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKTRSTK- 480
Query: 593 EIKNNASKFNSMFNSIR 609
+K + ++F IR
Sbjct: 481 -VKWESVSVLNLFTRIR 496
|
Key regulator of ligase activity of the anaphase promoting complex/cyclosome (APC/C), which confers substrate specificity upon the complex. Associates with the APC/C in late mitosis, in replacement of CDC20, and activates the APC/C during anaphase and telophase. The APC/C remains active in degrading substrates to ensure that positive regulators of the cell cycle do not accumulate prematurely. At the G1/S transition FZR1 is phosphorylated, leading to its dissociation from the APC/C. Following DNA damage, it is required for the G2 DNA damage checkpoint: its dephosphorylation and reassociation with the APC/C leads to the ubiquitination of PLK1, preventing entry into mitosis. Homo sapiens (taxid: 9606) |
| >sp|Q9R1K5|FZR_MOUSE Fizzy-related protein homolog OS=Mus musculus GN=Fzr1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 317 bits (811), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 176/364 (48%), Positives = 223/364 (61%), Gaps = 37/364 (10%)
Query: 247 KPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYII 306
KPT R I ++LDAPE+Q+D+YLNL+DWS NVL+V LG +YLW+
Sbjct: 166 KPT-RKISKIPFKVLDAPELQDDFYLNLVDWSSLNVLSVGLGTCVYLWSA---------- 214
Query: 307 CQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSA 366
C S Q R D + +EG ++V SV W + G ++ VGT G VQ+WD +A
Sbjct: 215 CTS-----------QVTRLCD--LSVEG-DSVTSVGWSERGNLVAVGTHKGFVQIWDAAA 260
Query: 367 KKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRD-HKVALLQNHTQEVCGLK 425
KK ++GH RVGALAWN LSSGSR I+ D+R+ LQ H QEVCGLK
Sbjct: 261 GKKLSMLEGHTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLK 320
Query: 426 WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASG 485
WS D + LASGGNDN L +W+ H+ S P+ + H AAVKAIAW P +LASG
Sbjct: 321 WSTDHQLLASGGNDNKLLVWN-----HS-SLSPVQQYTEHLAAVKAIAWSPHQHGLLASG 374
Query: 486 GGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV 545
GGTADR I FWN +G L IDT SQVC L W+ ELVS HG++QNQ+++WKYPSL
Sbjct: 375 GGTADRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSLT 434
Query: 546 KVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEIKNNASKFNSMF 605
+VA+L GHS RVL LAMSPD +++ DETLR W +F K +S K+ + S N +F
Sbjct: 435 QVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKTRSTKESV----SVLN-LF 489
Query: 606 NSIR 609
IR
Sbjct: 490 TRIR 493
|
Key regulator of ligase activity of the anaphase promoting complex/cyclosome (APC/C), which confers substrate specificity upon the complex. Associates with the APC/C in late mitosis, in replacement of CDC20, and activates the APC/C during anaphase and telophase. The APC/C remains active in degrading substrates to ensure that positive regulators of the cell cycle do not accumulate prematurely. At the G1/S transition FZR1 is phosphorylated, leading to its dissociation from the APC/C. Following DNA damage, it is required for the G2 DNA damage checkpoint: its dephosphorylation and reassociation with the APC/C leads to the ubiquitination of PLK1, preventing entry into mitosis. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 609 | ||||||
| 383864849 | 524 | PREDICTED: cell division cycle protein 2 | 0.848 | 0.986 | 0.478 | 1e-154 | |
| 91078224 | 519 | PREDICTED: similar to WD repeat-containi | 0.822 | 0.965 | 0.451 | 1e-139 | |
| 158288148 | 537 | AGAP009338-PA [Anopheles gambiae str. PE | 0.798 | 0.905 | 0.436 | 1e-138 | |
| 359321384 | 499 | PREDICTED: cell division cycle protein 2 | 0.816 | 0.995 | 0.436 | 1e-137 | |
| 195343142 | 526 | GM18667 [Drosophila sechellia] gi|195579 | 0.827 | 0.958 | 0.442 | 1e-137 | |
| 33636539 | 526 | RE39287p [Drosophila melanogaster] | 0.827 | 0.958 | 0.438 | 1e-136 | |
| 291244309 | 527 | PREDICTED: Cdc20-like [Saccoglossus kowa | 0.840 | 0.971 | 0.460 | 1e-136 | |
| 17137788 | 526 | fizzy [Drosophila melanogaster] gi|11097 | 0.827 | 0.958 | 0.438 | 1e-136 | |
| 307203952 | 526 | Cell division cycle protein 20-like prot | 0.811 | 0.939 | 0.455 | 1e-135 | |
| 195386112 | 529 | GJ10640 [Drosophila virilis] gi|19414820 | 0.855 | 0.984 | 0.440 | 1e-134 |
| >gi|383864849|ref|XP_003707890.1| PREDICTED: cell division cycle protein 20 homolog [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 295/616 (47%), Positives = 385/616 (62%), Gaps = 99/616 (16%)
Query: 1 MSQFAFFNDLNSALNMDEPLTKGPLPRWQRKNKENSSVEMNMSNFNSSNSMSSSDLNKSR 60
MS + ++N+ MDE + KGPLPRWQ+K E+S+ +N+S +S + ++S N +
Sbjct: 1 MSHLKYMKEINNLTRMDEAI-KGPLPRWQKKCLESSNSSINLSVNSSRKTANASFANVTT 59
Query: 61 GNEERKRSQSVGRKTP-KTPKKSPGRHKSNPNTPSAKSKTPSGGDRYIPNRSAIDTELSH 119
G K++ S +KTP K KKSP R SA +KTP+GGDR+IP+RS + +L +
Sbjct: 60 GKTPTKKNDSRTKKTPSKGSKKSPSR-------TSALTKTPNGGDRFIPSRSTTNFDLGY 112
Query: 120 YLLTR------DENMEDLSPSEREKRKAMSELVHGKDIQKSRVLAFQNKAPPPPDGYQNS 173
Y + + +E +++ SPS+RE ++ + E +HG DI R+L++QNKAP PP+GYQN
Sbjct: 113 YKIQQANAEKDEEKVDNTSPSKREMQRLIGENLHGGDINNMRILSYQNKAPAPPEGYQNP 172
Query: 174 LKVALNSAITSSPEMKIWKISVHQNVKSVKLCQNLFMERIFKSLEYLLFKIKPLPHLMAI 233
L+V + T + SVK+ S Y+
Sbjct: 173 LRVIYSQCKTPA---------------SVKV-----------STRYI------------- 193
Query: 234 KILSNTSKTPMGSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYL 293
P + L A I+D DYYLNL+DWS N+LAVALG ++YL
Sbjct: 194 --------------PQTPDKILDAPEIVD------DYYLNLVDWSENNILAVALGANVYL 233
Query: 294 WNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVG 353
WN S + I+ L +LEGN+ VCSVAWIQEG L VG
Sbjct: 234 WNAASGT-------------------------IEQLFELEGNDYVCSVAWIQEGPYLAVG 268
Query: 354 TSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVAL 413
T++G +LWD S K+ R M+GH VRVG+LAWN+Y+L+SG R G IVHHDVR RDH ++
Sbjct: 269 TTVGNTELWDCSQMKRVRVMNGHAVRVGSLAWNSYVLTSGCRAGQIVHHDVRQRDHLIST 328
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
+ H QEVCGLKWSPDG+YLASGGNDN+L IW + GQ TQPI+SL++HQAAVKA+A
Sbjct: 329 INAHAQEVCGLKWSPDGKYLASGGNDNMLQIWPSISGQSHTHTQPIYSLNQHQAAVKALA 388
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQ 533
WCPW N+LASGGGTADR I FWN ++GACL++IDTKSQVC+LLW++ YKE+VS HG+AQ
Sbjct: 389 WCPWQNNILASGGGTADRSIRFWNCNTGACLNTIDTKSQVCSLLWSTTYKEIVSGHGYAQ 448
Query: 534 NQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKE 593
NQL IWKYP++ KVAEL GHS+RVL+LAMSPD TTVLSAGADETLRLWK F+ KKKE
Sbjct: 449 NQLTIWKYPAMTKVAELTGHSSRVLHLAMSPDGTTVLSAGADETLRLWKCFQPDPHKKKE 508
Query: 594 IKNNASKFNSMFNSIR 609
S + SIR
Sbjct: 509 TNEIKSVAYRLKQSIR 524
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91078224|ref|XP_969612.1| PREDICTED: similar to WD repeat-containing protein slp1 [Tribolium castaneum] gi|270002363|gb|EEZ98810.1| hypothetical protein TcasGA2_TC001383 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 268/593 (45%), Positives = 354/593 (59%), Gaps = 92/593 (15%)
Query: 1 MSQFAFFNDLNSALNMDEPLTKGPLPRWQRKNKENSSVEMNMSNFNSSNSMSSSDLNKSR 60
MSQF F ++N+ + MD PLTKGP PRWQRK +EN N+S +S S+ + K+
Sbjct: 1 MSQFKFVTEMNNLVTMDGPLTKGPPPRWQRKGQENYQSSNNLSLNSSKQKSFSTSITKTP 60
Query: 61 GNEERKRSQSVGRKTPKTPKKSPGRHKSNPNTPSAKSKTPSGGDRYIPNRSAIDTELS-H 119
E K + KTP K+P +++SN SKTP+ PN++A T ++
Sbjct: 61 TKSEVK--------SKKTPTKTPNKNRSN------GSKTPT------PNKTASKTPVADR 100
Query: 120 YLLTRDENMEDLSPSEREKRKAMSELVHGKDIQKSRVLAFQNKAPPPPDGYQNSLKVALN 179
++ R + DL+ K++ N
Sbjct: 101 FIPVRSMSNFDLA----------------------------------------HYKLSQN 120
Query: 180 SAITSSPEMKIWKISVHQNVKSVKLCQNLFMERIFKSLEYLLFKIKPLPHLMAIKILSNT 239
+ SP K + ++ +N+ + + K P ++++
Sbjct: 121 EDTSDSPTQKELQKAMFENLHGANIDSQKILSYTNKP------PTAPAGFQNPMRVIYTQ 174
Query: 240 SKTPMGSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESD 299
+KTP K +RYIP DRILDAP+I +DYYLNL+DWS NVLAVALG +YLWN +
Sbjct: 175 TKTPASVKSNNRYIPQAPDRILDAPDIVDDYYLNLMDWSAGNVLAVALGAHVYLWNAGTG 234
Query: 300 SNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTV 359
+ I+ L++L+GN+ VCS+AWIQ+G L VGT+ GTV
Sbjct: 235 N-------------------------IEDLLELQGNDYVCSLAWIQDGDHLAVGTTNGTV 269
Query: 360 QLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419
+LWD K+ R MDGH RVG+L+WN+Y+L+SG R G I+HHDVR R+H + L HTQ
Sbjct: 270 ELWDCGRAKRLRVMDGHSARVGSLSWNSYVLTSGCRSGQIIHHDVRQREHIITTLSGHTQ 329
Query: 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSP 479
EVCGLKWSPDGRYLASGGNDN+LNIW G H + QP+H + HQAAVKA+AWCPW
Sbjct: 330 EVCGLKWSPDGRYLASGGNDNVLNIWQSQTGSHHTNNQPLHIFTAHQAAVKALAWCPWQG 389
Query: 480 NVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIW 539
+VLASGGGTADRHI FWN + G+C++S+DTKSQVCALLW+ +YKE++S HGFA N+LIIW
Sbjct: 390 HVLASGGGTADRHIRFWNCNIGSCINSVDTKSQVCALLWSCNYKEIISGHGFANNELIIW 449
Query: 540 KYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKK 592
KYP++ KVAEL GH+ARVL+L MSPD +TVLSAGADETLRLWK F K +K K
Sbjct: 450 KYPAMTKVAELTGHTARVLHLVMSPDGSTVLSAGADETLRLWKCFVKNSTKTK 502
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158288148|ref|XP_310009.4| AGAP009338-PA [Anopheles gambiae str. PEST] gi|157019244|gb|EAA05793.5| AGAP009338-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 266/609 (43%), Positives = 354/609 (58%), Gaps = 123/609 (20%)
Query: 1 MSQFAFFNDLNSALNMDEPLTKGPLPRWQRKNKENSSVEMNMSNFNSSNSMSSSDL-NKS 59
M+QF N+LN+ L MD KGP+PRWQRK +N+S +S S +SS L N S
Sbjct: 1 MAQFKHLNELNTFLTMDGENAKGPVPRWQRK--------LNLSG--ASTSFNSSALANTS 50
Query: 60 RGNEERKRSQSVGRKTPKTPKKSPGRHKSNPNTPSAKSKTPSGGDRYIPNRSAIDTELSH 119
+ S +K +TP K P ++ NT P GGDR+IP+R+A D +L H
Sbjct: 51 ARQTLSGTASSASKKFSQTPSKGP---TASSNTNGNAQNQPGGGDRFIPSRTATDFDLGH 107
Query: 120 YLLTRDENMED------------------------LSPSEREKRKAMSELVHGKDIQKSR 155
Y++ + + +SP + E+ K++SE + G DI K R
Sbjct: 108 YIVKQGTASNEEGEGGGNLENEEGAAGGGSTSNIPVSPKQSERMKSLSEAMRGCDISKQR 167
Query: 156 VLAFQNKAPPPPDGYQNSLKVALNSAITSSPEMKIWKISVHQNVKSVKLCQNLFMERIFK 215
+ +A + + + PE
Sbjct: 168 L-------------------LAFRTKVPAPPE---------------------------- 180
Query: 216 SLEYLLFKIKPLPHLMAIKILSNTSKTPMGSKPTSRYIPLTADRILDAPEIQNDYYLNLI 275
+ PL + ++K TPM +K SRYIP +RILDAPEI NDYYLNL+
Sbjct: 181 ------GHVNPLKAIYSVK-------TPMSAKSGSRYIPNAPERILDAPEIMNDYYLNLM 227
Query: 276 DWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGN 335
DWS NV+AVALG S+YLWN + + I+ L + EGN
Sbjct: 228 DWSTDNVIAVALGASVYLWNAATGT-------------------------IEMLFENEGN 262
Query: 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSR 395
++ CS++WI EG++L VGTS GTV+LWD K+ R M+GH RVG LAWN+Y+L SGSR
Sbjct: 263 DHACSLSWIHEGHILAVGTSAGTVELWDCENMKRLRVMNGHSARVGVLAWNSYVLCSGSR 322
Query: 396 CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS 455
G IV+HDVR+R H + +LQ HTQEVCGLKWSPDG+YLASGGNDNL+++WS G +
Sbjct: 323 DGTIVNHDVRTRQHNIGVLQGHTQEVCGLKWSPDGKYLASGGNDNLVHVWSAAHGAPHAT 382
Query: 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCA 515
+P+H ++HQAA++A+AWCPW PNVLASGGGTADR I FWNV++G ++S+DTKSQVC
Sbjct: 383 GEPLHVFNQHQAAIRALAWCPWQPNVLASGGGTADRTIKFWNVANGQLMNSVDTKSQVCG 442
Query: 516 LLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGAD 575
LL++ YKEL+SAHG+ NQL IWKYPS++K +L GH+ RVL +AMSPD +TV+SAGAD
Sbjct: 443 LLFSKTYKELISAHGYVNNQLSIWKYPSMMKQVDLMGHTGRVLQIAMSPDGSTVMSAGAD 502
Query: 576 ETLRLWKIF 584
ETLRLW F
Sbjct: 503 ETLRLWNCF 511
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|359321384|ref|XP_003639578.1| PREDICTED: cell division cycle protein 20 homolog [Canis lupus familiaris] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 267/611 (43%), Positives = 360/611 (58%), Gaps = 114/611 (18%)
Query: 1 MSQFAFFNDLNSALNMDEPLTKGPLPRWQRKNKENSSVEMNMSNFNSSNSMSSSDLNKSR 60
M+QF F +DL+S L +D P+ P RWQRK +E + + + M +++
Sbjct: 1 MAQFVFESDLHSLLQLDAPIPNAPPARWQRKAREAAG--------PAPSPMRAAN----- 47
Query: 61 GNEERKRSQSVGRKTPKTPKKSPGRHKSNPNTPSAKSKTPSGGDRYIPNRSAIDTELSHY 120
RS S GR +TP KS + ++ P+ P GGDRYIP+RSA E++ +
Sbjct: 48 ------RSHSAGRTPGRTPGKSSSKAQTTPSKP--------GGDRYIPHRSASQMEVASF 93
Query: 121 LLTRDENMEDL-SPSEREKRKAMSELVHGKDIQKSRVLAFQNKAPPPPDGYQNSLKVALN 179
LL+++ E+ +P+++E +KA + ++G D++++++L K P+GYQN LKV
Sbjct: 94 LLSKENQPEESHTPTKKEHQKAWALNLNGFDVEEAKILRLSGKPQNAPEGYQNRLKV--- 150
Query: 180 SAITSSPEMKIWKISVHQNVKSVKLCQNLFMERIFKSLEYLLFKIKPLPHLMAIKILSNT 239
L+ K P +T
Sbjct: 151 -----------------------------------------LYSQKATP--------GST 161
Query: 240 SKTPMGSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESD 299
KT RYIP DRILDAPEI+NDYYLNL+DWS NVLAVAL S+YLW+ S
Sbjct: 162 RKT-------CRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSG 214
Query: 300 SNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTV 359
+ + + P E + SVAWI+EG L VGTS V
Sbjct: 215 DILQLLQMEQP------------------------GEYISSVAWIKEGNYLAVGTSSAEV 250
Query: 360 QLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419
QLWDV +K+ R M GH RV +L WN+YILSSGSR G+I HHDVR +H VA L H+Q
Sbjct: 251 QLWDVQQQKRLRNMTGHSARVSSLCWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 310
Query: 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSP 479
EVCGL+W+PDGR+LASGGNDNL+N+W PG+ + P+ + ++HQ AVKA+AWCPW
Sbjct: 311 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV--PLQTFTQHQGAVKAVAWCPWQS 368
Query: 480 NVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIW 539
NVLA+GGGT+DRHI WNV SGACL ++D +SQVC++LW+ YKEL+S HGFAQNQL+IW
Sbjct: 369 NVLATGGGTSDRHIRIWNVCSGACLSAVDAQSQVCSILWSPHYKELISGHGFAQNQLVIW 428
Query: 540 KYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI-KNNA 598
KYP++ KVAEL GH+ARVL+L MSPD TV SA ADETLRLW+ FE ++++E K +A
Sbjct: 429 KYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASA 488
Query: 599 SKFNSMFNSIR 609
+K + + IR
Sbjct: 489 AKSSLIHQGIR 499
|
Source: Canis lupus familiaris Species: Canis lupus Genus: Canis Family: Canidae Order: Carnivora Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|195343142|ref|XP_002038157.1| GM18667 [Drosophila sechellia] gi|195579551|ref|XP_002079625.1| GD24052 [Drosophila simulans] gi|194133007|gb|EDW54575.1| GM18667 [Drosophila sechellia] gi|194191634|gb|EDX05210.1| GD24052 [Drosophila simulans] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 279/631 (44%), Positives = 374/631 (59%), Gaps = 127/631 (20%)
Query: 1 MSQFAFFNDLNSALNMDEPLTKGPLPRWQRKNKENSSVEMNMS-NFNSSNSMSSSDLNKS 59
MSQF F +DL +AL MD T+GP PRW++K +E +++ + N++ S+ S N S
Sbjct: 1 MSQFNFVSDLQNALIMDGE-TRGPAPRWKKK------LEASLNGSVNTTRSVLSVSYNTS 53
Query: 60 RGNEERKRSQSVGRKTP-KTP-KKSPGRHKSNPNTPSAKSKTPSGGDRYIPNRSAIDTEL 117
G + P KTP K S G+ K + TPS KTP GGDR+IPNR+A + EL
Sbjct: 54 FS----------GVQAPTKTPGKSSEGKTKKSNTTPS---KTPGGGDRFIPNRAATNFEL 100
Query: 118 SHYLLTRD-------ENMEDLSPSERE-----------KRKAMSELVHGKDIQKSRVLAF 159
+H+L+ +D EN + S + E ++K +SE+ D + R+L +
Sbjct: 101 AHFLVNKDSGDKSDEENDKATSSNSNESNVQASAHKGDRQKLISEVAQVGDSKGGRILCY 160
Query: 160 QNKAPPPPDGYQNSLKVALNSAITSSPEMKIWKISVHQNVKSVKLCQNLFMERIFKSLEY 219
QNKAP ++PE H N
Sbjct: 161 QNKAP-------------------AAPE-------THNN--------------------- 173
Query: 220 LLFKIKPLPHLMAIKILSNTSKTPMGSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSH 279
PL + +IK TP+ +K SRYIP T++RILDAP+ NDYYLNL+DWS
Sbjct: 174 ------PLKVVYSIK-------TPISTKSGSRYIPTTSERILDAPDFINDYYLNLMDWSA 220
Query: 280 FNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVC 339
N++AVALG +YLWN ++ + I+ L + E +
Sbjct: 221 DNIVAVALGSCVYLWNAQTGN-------------------------IEQLTEFEEGDYAG 255
Query: 340 SVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNI 399
S++WIQEG +L +G S G V+LWD S K+ R MDGH RVG+LAWN++++SSGSR G I
Sbjct: 256 SLSWIQEGQILAIGNSTGAVELWDCSKVKRLRVMDGHSARVGSLAWNSFLVSSGSRDGTI 315
Query: 400 VHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPI 459
VHHDVR+R+HK++ L HTQEVCGLKWS D +YLASGGNDNL+N+WS V G +T P+
Sbjct: 316 VHHDVRAREHKLSTLSGHTQEVCGLKWSTDFKYLASGGNDNLVNVWSAVSGGVGTATDPL 375
Query: 460 HSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWN 519
H + HQAAV+A+AWCPW P+ LASGGGTADR I FWNV++G + S+D+KSQVCALL++
Sbjct: 376 HKFNDHQAAVRALAWCPWQPSTLASGGGTADRCIKFWNVNNGTLMKSVDSKSQVCALLFS 435
Query: 520 SDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLR 579
YKEL+SAHGFA NQL IWKYP++VK A+L GH++RVL +AMSPD +TV+SAGADETLR
Sbjct: 436 RHYKELISAHGFANNQLTIWKYPTMVKQADLTGHTSRVLQMAMSPDGSTVISAGADETLR 495
Query: 580 LWKIFE-KVKSKKKEIKNNASKFNSMFNSIR 609
LW F + KK + + K + SIR
Sbjct: 496 LWNCFAPDPLASKKAVSTSKGKQSVFRQSIR 526
|
Source: Drosophila sechellia Species: Drosophila sechellia Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|33636539|gb|AAQ23567.1| RE39287p [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 277/631 (43%), Positives = 373/631 (59%), Gaps = 127/631 (20%)
Query: 1 MSQFAFFNDLNSALNMDEPLTKGPLPRWQRKNKENSSVEMNMS-NFNSSNSMSSSDLNKS 59
MSQF F +DL +AL MD T+GP PRW++K +E +++ + N++ S+ S N S
Sbjct: 1 MSQFNFVSDLQNALIMDGE-TRGPAPRWKKK------LEASLNGSVNTTRSVLSVSYNTS 53
Query: 60 RGNEERKRSQSVGRKTP-KTP-KKSPGRHKSNPNTPSAKSKTPSGGDRYIPNRSAIDTEL 117
G + P KTP K S G+ K + TPS KTP GGDR+IPNR+A + EL
Sbjct: 54 FS----------GVQAPTKTPGKSSEGKTKKSNTTPS---KTPGGGDRFIPNRAATNFEL 100
Query: 118 SHYLLTRD-------ENMEDLSPSERE-----------KRKAMSELVHGKDIQKSRVLAF 159
+H+L+ +D EN + S + E ++K +SE+ D + R+L +
Sbjct: 101 AHFLVNKDSGDKSDEENYKATSSNSNESNVQASAHKGDRQKLISEVAQVGDSKGGRILCY 160
Query: 160 QNKAPPPPDGYQNSLKVALNSAITSSPEMKIWKISVHQNVKSVKLCQNLFMERIFKSLEY 219
QNKAP ++PE H N
Sbjct: 161 QNKAP-------------------AAPE-------THNN--------------------- 173
Query: 220 LLFKIKPLPHLMAIKILSNTSKTPMGSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSH 279
PL + +IK TP+ +K SRYIP T++RILDAP+ NDYYLNL+DWS
Sbjct: 174 ------PLKVVYSIK-------TPISTKSGSRYIPTTSERILDAPDFINDYYLNLMDWSA 220
Query: 280 FNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVC 339
N++AVALG +YLWN ++ + I+ L + E +
Sbjct: 221 DNIVAVALGSCVYLWNAQTGN-------------------------IEQLTEFEEGDYAG 255
Query: 340 SVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNI 399
S++WIQEG +L +G S G V+LWD S K+ R MDGH RVG+LAWN++++SSGSR G I
Sbjct: 256 SLSWIQEGQILAIGNSTGAVELWDCSKVKRLRVMDGHSARVGSLAWNSFLVSSGSRDGTI 315
Query: 400 VHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPI 459
VHHDVR+R+HK++ L HTQEVCGLKWS D +YLASGGNDNL+N+WS G +T P+
Sbjct: 316 VHHDVRAREHKLSTLSGHTQEVCGLKWSTDFKYLASGGNDNLVNVWSAASGGVGTATDPL 375
Query: 460 HSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWN 519
H + HQAAV+A+AWCPW P+ LASGGGTADR I FWNV++G + S+D+KSQVC+LL++
Sbjct: 376 HKFNDHQAAVRALAWCPWQPSTLASGGGTADRCIKFWNVNNGTLMKSVDSKSQVCSLLFS 435
Query: 520 SDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLR 579
YKEL+SAHGFA NQL IWKYP++VK A+L GH++RVL +AMSPD +TV+SAGADETLR
Sbjct: 436 RHYKELISAHGFANNQLTIWKYPTMVKQADLTGHTSRVLQMAMSPDGSTVISAGADETLR 495
Query: 580 LWKIFE-KVKSKKKEIKNNASKFNSMFNSIR 609
LW F + KK + + K + SIR
Sbjct: 496 LWNCFAPDPLASKKAVSTSKGKQSVFRQSIR 526
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|291244309|ref|XP_002742040.1| PREDICTED: Cdc20-like [Saccoglossus kowalevskii] | Back alignment and taxonomy information |
|---|
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 284/617 (46%), Positives = 357/617 (57%), Gaps = 105/617 (17%)
Query: 1 MSQFAFFNDLNSALNMDEPLTKGPLPRWQRKNKENSSVEMNMSNFNSSNSMSSSDLNKSR 60
M+ +F ND+NS L +D P T+GP RWQRK E SS +M+ M +S N+S
Sbjct: 1 MAHLSFENDINSLLKLDGP-TRGPAMRWQRKAAEASSCNTSMNTSTCCTPMKTS--NRSF 57
Query: 61 GNEERKRSQSVGRKTPKTPKKSPGRHKS-NPNTPSAKSKTPS---GGDRYIPNRSAIDTE 116
N S +V T KTPK G K+ P K+KTPS GDR+IP+RS +
Sbjct: 58 NN-----SMTVKTPTSKTPKTPCGSKKTKTPGKTPGKTKTPSKTLSGDRFIPSRSTTSFD 112
Query: 117 LSHYLLTRDENMEDLSPSEREKRKAMSELVHGKDIQKSRVLAFQNKAPPPPDGYQNSLKV 176
L HY L + KDI+ + P YQ ++
Sbjct: 113 LGHYKLLNESK---------------------KDIENDTL-------SPSKKDYQKTMAE 144
Query: 177 ALNSAITSSPEMKIWKISVHQNVKSVKLCQNLFMERIFKSLEYLLFKIKPLP----HLMA 232
LN N +I L +K KP +
Sbjct: 145 NLNG--------------------------NALQSKI------LSYKSKPPQAPEGYQNN 172
Query: 233 IKILSNTSKTPMGSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIY 292
+++L + SKTP + T R+IP +RILDAP+I +DYYLNL+DWS N LAVAL G++Y
Sbjct: 173 LRVLYSQSKTPGSCRKTVRHIPQVPERILDAPDILDDYYLNLLDWSCNNHLAVALAGNVY 232
Query: 293 LWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNEN-VCSVAWIQEGYMLG 351
LWN N I L+ +E E+ V SV+WI+EG L
Sbjct: 233 LWNAS-------------------------NGEIQQLLQVENPEDYVSSVSWIKEGNYLA 267
Query: 352 VGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKV 411
VGTS G VQLWDV+ K+ R M GH RVGAL+WN++ILSSGSR GNI HHDVR +H +
Sbjct: 268 VGTSSGEVQLWDVAQSKRLRNMTGHVARVGALSWNSFILSSGSRSGNIHHHDVRVANHHI 327
Query: 412 ALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKA 471
A L HTQEVCGL+WSPDGR+LASGGNDNLLN+W P+H+ ++HQAAVKA
Sbjct: 328 ATLSGHTQEVCGLEWSPDGRHLASGGNDNLLNVWQA--SIDNSGNTPLHTFTQHQAAVKA 385
Query: 472 IAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGF 531
++WCPW P++LASGGGTADRHI FWNV+SG CL+S+DTKSQVCA+LW+ +YKE++SAHGF
Sbjct: 386 VSWCPWQPSILASGGGTADRHIRFWNVNSGVCLNSVDTKSQVCAILWSKEYKEMISAHGF 445
Query: 532 AQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKK 591
A NQLIIWKYP++ KV EL GHS+RVL++A+SPD TTV+S ADETLRLWK FE KK
Sbjct: 446 ANNQLIIWKYPTMTKVTELTGHSSRVLHMALSPDGTTVVSGAADETLRLWKCFEVDAHKK 505
Query: 592 KEIKNNASKFNSMFNSI 608
KE K AS S NS
Sbjct: 506 KE-KTLASGKKSTTNSF 521
|
Source: Saccoglossus kowalevskii Species: Saccoglossus kowalevskii Genus: Saccoglossus Family: Harrimaniidae Order: Class: Enteropneusta Phylum: Hemichordata Superkingdom: Eukaryota |
| >gi|17137788|ref|NP_477501.1| fizzy [Drosophila melanogaster] gi|1109772|gb|AAA83150.1| Method: conceptual translation supplied by author [Drosophila melanogaster] gi|7298293|gb|AAF53523.1| fizzy [Drosophila melanogaster] gi|117935534|gb|ABK57089.1| LD44795p [Drosophila melanogaster] gi|219990633|gb|ACL68690.1| FI02843p [Drosophila melanogaster] gi|220947642|gb|ACL86364.1| fzy-PA [synthetic construct] | Back alignment and taxonomy information |
|---|
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 277/631 (43%), Positives = 373/631 (59%), Gaps = 127/631 (20%)
Query: 1 MSQFAFFNDLNSALNMDEPLTKGPLPRWQRKNKENSSVEMNMS-NFNSSNSMSSSDLNKS 59
MSQF F +DL +AL MD T+GP PRW++K +E +++ + N++ S+ S N S
Sbjct: 1 MSQFNFVSDLQNALIMDGE-TRGPAPRWKKK------LEASLNGSVNTTRSVLSVSYNTS 53
Query: 60 RGNEERKRSQSVGRKTP-KTP-KKSPGRHKSNPNTPSAKSKTPSGGDRYIPNRSAIDTEL 117
G + P KTP K S G+ K + TPS KTP GGDR+IPNR+A + EL
Sbjct: 54 FS----------GVQAPTKTPGKSSEGKTKKSNTTPS---KTPGGGDRFIPNRAATNFEL 100
Query: 118 SHYLLTRD-------ENMEDLSPSERE-----------KRKAMSELVHGKDIQKSRVLAF 159
+H+L+ +D EN + S + E ++K +SE+ D + R+L +
Sbjct: 101 AHFLVNKDSGDKSDEENDKATSSNSNESNVQASAHKGDRQKLISEVAQVGDSKGGRILCY 160
Query: 160 QNKAPPPPDGYQNSLKVALNSAITSSPEMKIWKISVHQNVKSVKLCQNLFMERIFKSLEY 219
QNKAP ++PE H N
Sbjct: 161 QNKAP-------------------AAPE-------THNN--------------------- 173
Query: 220 LLFKIKPLPHLMAIKILSNTSKTPMGSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSH 279
PL + +IK TP+ +K SRYIP T++RILDAP+ NDYYLNL+DWS
Sbjct: 174 ------PLKVVYSIK-------TPISTKSGSRYIPTTSERILDAPDFINDYYLNLMDWSA 220
Query: 280 FNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVC 339
N++AVALG +YLWN ++ + I+ L + E +
Sbjct: 221 DNIVAVALGSCVYLWNAQTGN-------------------------IEQLTEFEEGDYAG 255
Query: 340 SVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNI 399
S++WIQEG +L +G S G V+LWD S K+ R MDGH RVG+LAWN++++SSGSR G I
Sbjct: 256 SLSWIQEGQILAIGNSTGAVELWDCSKVKRLRVMDGHSARVGSLAWNSFLVSSGSRDGTI 315
Query: 400 VHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPI 459
VHHDVR+R+HK++ L HTQEVCGLKWS D +YLASGGNDNL+N+WS G +T P+
Sbjct: 316 VHHDVRAREHKLSTLSGHTQEVCGLKWSTDFKYLASGGNDNLVNVWSAASGGVGTATDPL 375
Query: 460 HSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWN 519
H + HQAAV+A+AWCPW P+ LASGGGTADR I FWNV++G + S+D+KSQVC+LL++
Sbjct: 376 HKFNDHQAAVRALAWCPWQPSTLASGGGTADRCIKFWNVNNGTLMKSVDSKSQVCSLLFS 435
Query: 520 SDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLR 579
YKEL+SAHGFA NQL IWKYP++VK A+L GH++RVL +AMSPD +TV+SAGADETLR
Sbjct: 436 RHYKELISAHGFANNQLTIWKYPTMVKQADLTGHTSRVLQMAMSPDGSTVISAGADETLR 495
Query: 580 LWKIFE-KVKSKKKEIKNNASKFNSMFNSIR 609
LW F + KK + + K + SIR
Sbjct: 496 LWNCFAPDPLASKKAVSTSKGKQSVFRQSIR 526
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307203952|gb|EFN82859.1| Cell division cycle protein 20-like protein [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 269/590 (45%), Positives = 358/590 (60%), Gaps = 96/590 (16%)
Query: 1 MSQFAFFNDLNSALNMDEPLTKGPLPRWQRKNKENSSVEMNMSNFNSSNSMSSSDLNKSR 60
MS F +LN+ MD+P+ KGPLPRWQ+K ENS+ +NM+ +S + +S +
Sbjct: 1 MSHLRFMKELNNLTRMDDPI-KGPLPRWQKKCLENSNSSLNMTMNSSKKVVGNSFSSSIS 59
Query: 61 GNEERKRSQSVGRKTP-KTPKKSPGRHKSNPNTPSAKSKTPSGGDRYIPNRSAIDTELSH 119
G K+ S +KTP K +KSP R +KTP+GGDR
Sbjct: 60 GKSPVKKVDSKIKKTPSKGSRKSPNR---------TSAKTPNGGDR-------------- 96
Query: 120 YLLTRDENMEDLSPSEREKRKAMSELVHGKDIQKSRVLAFQNKAPPPPDGYQNSLKVALN 179
++ +R DLS H K +Q+ QN+
Sbjct: 97 FIPSRSTTNFDLS--------------HYKILQQ-----------------QNADPDKDK 125
Query: 180 SAITSSPEMKIWKISVHQNVKSVKLCQNLFMERIFKSLEYLLFKIK----PLPHLMAIKI 235
S + ++ ++ + +NL I K++ L + IK P + +K+
Sbjct: 126 DDDLSPTKREMQRL----------IGENLHGGDI-KNMRVLSYHIKAPAAPDGYQNPLKV 174
Query: 236 LSNTSKTPMGSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLWN 295
L + +KTP K ++RYIP DRILDAPEI +DYYLNL+DWS N+LAVALG ++YLWN
Sbjct: 175 LYSQTKTPASVKASTRYIPQAPDRILDAPEIIDDYYLNLVDWSVNNILAVALGANVYLWN 234
Query: 296 GESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTS 355
+ S I L +LE + +CSV+WIQEG L +GT+
Sbjct: 235 AGTGS-------------------------IQQLFELEPTDYICSVSWIQEGPHLAIGTT 269
Query: 356 LGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQ 415
+G +LWD S K+ R M+GH RVG+L WN++ILSSG R G IVHHDVR RDH ++ L
Sbjct: 270 VGNTELWDCSEMKRVRVMNGHTARVGSLCWNSHILSSGCRLGKIVHHDVRQRDHVISTLN 329
Query: 416 NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWC 475
H QE+CGLKWSP+G+YLASGGNDN+L IW + GQ+ QPI+SL+ HQAAVKA+AWC
Sbjct: 330 AHAQEICGLKWSPNGQYLASGGNDNMLLIWPSMAGQNHTLAQPIYSLNHHQAAVKALAWC 389
Query: 476 PWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQ 535
PW N+LASGGGTADR I FWN ++GACL+SIDT+SQVC+LLW+++YKE++S HG+AQNQ
Sbjct: 390 PWQNNILASGGGTADRTIRFWNCNTGACLNSIDTRSQVCSLLWSTNYKEIISGHGYAQNQ 449
Query: 536 LIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585
L IWKYP++ KVA+L GH++RVL+LAMSPD TTVLSAGADETLRLWK F+
Sbjct: 450 LTIWKYPTMTKVADLTGHTSRVLHLAMSPDGTTVLSAGADETLRLWKCFQ 499
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195386112|ref|XP_002051748.1| GJ10640 [Drosophila virilis] gi|194148205|gb|EDW63903.1| GJ10640 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 272/617 (44%), Positives = 369/617 (59%), Gaps = 96/617 (15%)
Query: 1 MSQFAFFNDLNSALNMDEPLTKGPLPRWQRKNKENSSVEMNMS-NFNSSNSMSSSDLNKS 59
MSQF F +DL +AL MD T+GP PRW++K +E +++ + N++ S+ S N S
Sbjct: 1 MSQFNFVSDLQNALIMDGE-TRGPAPRWKKK------LEASLNGSVNTTRSVLSVSYNTS 53
Query: 60 RGNEERKRSQSVGRKTP-KTPKKSPGRHKSNPNTPSAKSKTPSGGDRYIPNRSAIDTELS 118
G + P KTP KS P T SKTP GGDR+IPNR+A + EL+
Sbjct: 54 FS----------GVQAPTKTPGKSADAKAKKPTT--TPSKTPGGGDRFIPNRAATNFELA 101
Query: 119 HYLLTRDENMEDLSPSEREKRKAMSELVHGKDIQKSRVLAFQNKAPPPPDGYQNSLKVAL 178
H+L+ +D D S E +++ P + +N+++
Sbjct: 102 HFLVNKDAG--DKSDEENDQQ------------------------PTSSNSNENNVQA-- 133
Query: 179 NSAITSSPEMKIWKISVHQNVKSVKLCQNLFMERIFKSLEYLLFKIK----PLPHLMAIK 234
S H+ + + + + KS L ++ K P H +K
Sbjct: 134 ---------------SAHKGERQKLIAEVAQVGESSKSGRILCYQNKAPAAPESHTNPLK 178
Query: 235 ILSNTSKTPMGSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLW 294
++ + KTP+ +K SRYIP T++RILDAP+ NDYYLNL+DWS N++AVALG +YLW
Sbjct: 179 VVYSL-KTPISTKSGSRYIPTTSERILDAPDFINDYYLNLMDWSGDNIVAVALGNCVYLW 237
Query: 295 NGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGT 354
N S + I+ L + E + C+++WIQEG +L +G
Sbjct: 238 NAASGN-------------------------IEQLTEYEEGDYACALSWIQEGQILAIGN 272
Query: 355 SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALL 414
S G V+LWD S K+ R MDGH RVG+LAWN+Y++SSGSR G I+HHDVRSR+HKV+ L
Sbjct: 273 STGAVELWDCSKVKRLRVMDGHSARVGSLAWNSYLVSSGSRDGTIIHHDVRSREHKVSSL 332
Query: 415 QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAW 474
H QEVCGLKWS D +YLASGGNDNL+N+WS +T+P+H + HQAAV+A+AW
Sbjct: 333 NGHAQEVCGLKWSTDFKYLASGGNDNLVNVWSLAGNGVGTATEPLHKFNEHQAAVRALAW 392
Query: 475 CPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQN 534
CPW PN LASGGGTADR I FWNV +G+ + S+D+KSQVCALL++ YKEL+SAHGFA N
Sbjct: 393 CPWQPNTLASGGGTADRCIKFWNVCNGSLIKSVDSKSQVCALLFSRHYKELISAHGFANN 452
Query: 535 QLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594
QL IWKYPS++K A+L GH++RVL +AMSPD +TV+SAGADETLRLW F K++
Sbjct: 453 QLTIWKYPSMIKQADLTGHTSRVLQMAMSPDGSTVISAGADETLRLWNCFAPDPMAAKKV 512
Query: 595 KN-NASKFNSMF-NSIR 609
N N++ S+F SIR
Sbjct: 513 SNVNSNAKKSVFRQSIR 529
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 609 | ||||||
| UNIPROTKB|Q12834 | 499 | CDC20 "Cell division cycle pro | 0.412 | 0.503 | 0.625 | 1.2e-138 | |
| UNIPROTKB|Q5H7C0 | 499 | CDC20 "Cell division cycle pro | 0.412 | 0.503 | 0.629 | 1.9e-138 | |
| MGI|MGI:1859866 | 499 | Cdc20 "cell division cycle 20" | 0.412 | 0.503 | 0.614 | 3.9e-138 | |
| RGD|620477 | 499 | Cdc20 "cell division cycle 20" | 0.412 | 0.503 | 0.614 | 5e-138 | |
| UNIPROTKB|Q62623 | 499 | Cdc20 "Cell division cycle pro | 0.412 | 0.503 | 0.614 | 5e-138 | |
| UNIPROTKB|F1MRW5 | 499 | CDC20 "Uncharacterized protein | 0.412 | 0.503 | 0.625 | 2.7e-137 | |
| UNIPROTKB|Q5ZI36 | 507 | CDC20 "Uncharacterized protein | 0.418 | 0.502 | 0.630 | 1.7e-129 | |
| ZFIN|ZDB-GENE-040426-2044 | 496 | cdc20 "cell division cycle 20 | 0.403 | 0.495 | 0.598 | 8.2e-124 | |
| FB|FBgn0001086 | 526 | fzy "fizzy" [Drosophila melano | 0.420 | 0.486 | 0.621 | 2.2e-105 | |
| TAIR|locus:2119151 | 457 | CDC20.1 "AT4G33270" [Arabidops | 0.400 | 0.533 | 0.538 | 1.1e-98 |
| UNIPROTKB|Q12834 CDC20 "Cell division cycle protein 20 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 1.2e-138, Sum P(4) = 1.2e-138
Identities = 159/254 (62%), Positives = 197/254 (77%)
Query: 329 LMDLEG-NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT 387
L+ +E E + SVAWI+EG L VGTS VQLWDV +K+ R M H RVG+L+WN+
Sbjct: 219 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS 278
Query: 388 YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSG 447
YILSSGSR G+I HHDVR +H VA L H+QEVCGL+W+PDGR+LASGGNDNL+N+W
Sbjct: 279 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 338
Query: 448 VPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI 507
PG+ + P+ + ++HQ AVKA+AWCPW NVLA+GGGT+DRHI WNV SGACL ++
Sbjct: 339 APGEGGWV--PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 396
Query: 508 DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET 567
D SQVC++LW+ YKEL+S HGFAQNQL+IWKYP++ KVAEL GH++RVL+L MSPD
Sbjct: 397 DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA 456
Query: 568 TVLSAGADETLRLW 581
TV SA ADETLRLW
Sbjct: 457 TVASAAADETLRLW 470
|
|
| UNIPROTKB|Q5H7C0 CDC20 "Cell division cycle protein 20 homolog" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 1.9e-138, Sum P(4) = 1.9e-138
Identities = 160/254 (62%), Positives = 196/254 (77%)
Query: 329 LMDLEG-NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT 387
L+ +E + V SVAWI+EG L VGTS VQLWDV +K+ R M H RVG+L WN+
Sbjct: 219 LLQMEQPGDYVSSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNS 278
Query: 388 YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSG 447
YILSSGSR G+I HHDVR +H VA L H+QEVCGL+W+PDGR+LASGGNDNL+N+W
Sbjct: 279 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 338
Query: 448 VPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI 507
PG+ + P+ + ++HQ AVKA+AWCPW NVLA+GGGT+DRHI WNV SGACL ++
Sbjct: 339 APGEGGWV--PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 396
Query: 508 DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET 567
D SQVC++LW+ YKEL+S HGFAQNQL+IWKYP++ KVAEL GH+ARVL+L MSPD
Sbjct: 397 DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTARVLSLTMSPDGA 456
Query: 568 TVLSAGADETLRLW 581
TV SA ADETLRLW
Sbjct: 457 TVASAAADETLRLW 470
|
|
| MGI|MGI:1859866 Cdc20 "cell division cycle 20" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 881 (315.2 bits), Expect = 3.9e-138, Sum P(4) = 3.9e-138
Identities = 156/254 (61%), Positives = 196/254 (77%)
Query: 329 LMDLEG-NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT 387
L+ +E + + SVAWI+EG L VGTS VQLWDV +K+ R M H RV +L+WN+
Sbjct: 219 LLQMEQPGDYISSVAWIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSHSARVSSLSWNS 278
Query: 388 YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSG 447
YILSSGSR G+I HHDVR +H VA L H+QEVCGL+W+PDGR+LASGGNDN++N+W
Sbjct: 279 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPS 338
Query: 448 VPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI 507
PG+ ++ P+ + ++HQ AVKA+AWCPW N+LA+GGGT+DRHI WNV SGACL ++
Sbjct: 339 GPGESGWA--PLQTFTQHQGAVKAVAWCPWQSNILATGGGTSDRHIRIWNVCSGACLSAV 396
Query: 508 DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET 567
D SQVC++LW+ YKEL+S HGFAQNQL+IWKYP++ KVAEL GH+ARVL L MSPD
Sbjct: 397 DVHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTARVLGLTMSPDGA 456
Query: 568 TVLSAGADETLRLW 581
TV SA ADETLRLW
Sbjct: 457 TVASAAADETLRLW 470
|
|
| RGD|620477 Cdc20 "cell division cycle 20" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 879 (314.5 bits), Expect = 5.0e-138, Sum P(4) = 5.0e-138
Identities = 156/254 (61%), Positives = 196/254 (77%)
Query: 329 LMDLEG-NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT 387
L+ +E + + SVAWI+EG L VGTS VQLWDV +K+ R M H RV +L+WN+
Sbjct: 219 LLQMEQPGDYISSVAWIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSHSARVSSLSWNS 278
Query: 388 YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSG 447
YILSSGSR G+I HHDVR +H VA L H+QEVCGL+W+PDGR+LASGGNDN++N+W
Sbjct: 279 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPS 338
Query: 448 VPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI 507
PG+ + P+ + ++HQ AVKA+AWCPW N+LA+GGGT+DRHI WNV SGACL ++
Sbjct: 339 GPGESGWV--PLQTFTQHQGAVKAVAWCPWQSNILATGGGTSDRHIRIWNVCSGACLSAV 396
Query: 508 DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET 567
D SQVC++LW+ YKEL+S HGFAQNQL+IWKYP++ KVAEL GH+ARVL+L MSPD
Sbjct: 397 DVHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTARVLSLTMSPDGA 456
Query: 568 TVLSAGADETLRLW 581
TV SA ADETLRLW
Sbjct: 457 TVASAAADETLRLW 470
|
|
| UNIPROTKB|Q62623 Cdc20 "Cell division cycle protein 20 homolog" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 879 (314.5 bits), Expect = 5.0e-138, Sum P(4) = 5.0e-138
Identities = 156/254 (61%), Positives = 196/254 (77%)
Query: 329 LMDLEG-NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT 387
L+ +E + + SVAWI+EG L VGTS VQLWDV +K+ R M H RV +L+WN+
Sbjct: 219 LLQMEQPGDYISSVAWIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSHSARVSSLSWNS 278
Query: 388 YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSG 447
YILSSGSR G+I HHDVR +H VA L H+QEVCGL+W+PDGR+LASGGNDN++N+W
Sbjct: 279 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPS 338
Query: 448 VPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI 507
PG+ + P+ + ++HQ AVKA+AWCPW N+LA+GGGT+DRHI WNV SGACL ++
Sbjct: 339 GPGESGWV--PLQTFTQHQGAVKAVAWCPWQSNILATGGGTSDRHIRIWNVCSGACLSAV 396
Query: 508 DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET 567
D SQVC++LW+ YKEL+S HGFAQNQL+IWKYP++ KVAEL GH+ARVL+L MSPD
Sbjct: 397 DVHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTARVLSLTMSPDGA 456
Query: 568 TVLSAGADETLRLW 581
TV SA ADETLRLW
Sbjct: 457 TVASAAADETLRLW 470
|
|
| UNIPROTKB|F1MRW5 CDC20 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 2.7e-137, Sum P(4) = 2.7e-137
Identities = 159/254 (62%), Positives = 196/254 (77%)
Query: 329 LMDLEG-NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT 387
L+ +E + + SVAWI+EG L VGTS VQLWDV +K+ R M H RVG+L WN+
Sbjct: 219 LLQMEQPGDYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLCWNS 278
Query: 388 YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSG 447
YILSSGSR G+I HHDVR +H VA L H+QEVCGL+W+PDGR+LASGGNDNL+N+W
Sbjct: 279 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 338
Query: 448 VPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI 507
PG+ + P+ + ++HQ AVKA+AWCPW NVLA+GGGT+DRHI WNV SGACL ++
Sbjct: 339 APGEGGWV--PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 396
Query: 508 DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET 567
D SQVC++LW+ YKEL+S HGFAQNQL+IWKYP++ KVAEL GH+ARVL+L MSPD
Sbjct: 397 DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTARVLSLTMSPDGA 456
Query: 568 TVLSAGADETLRLW 581
TV SA ADETLRLW
Sbjct: 457 TVASAAADETLRLW 470
|
|
| UNIPROTKB|Q5ZI36 CDC20 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 1.7e-129, Sum P(3) = 1.7e-129
Identities = 162/257 (63%), Positives = 195/257 (75%)
Query: 326 IDHLMDLEGNEN-VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALA 384
I L+ +E ++ V SV+WI+EG L VGT VQLWDV +K+ R+M H RVG+L+
Sbjct: 223 IIQLLQIENPDDYVSSVSWIKEGNYLAVGTRNAEVQLWDVQQQKRLRSMTSHSSRVGSLS 282
Query: 385 WNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNI 444
WN+YILSSGSR G+I HHDVR +H VA L HTQEVCGLKWS DGRYLASGGNDNL+NI
Sbjct: 283 WNSYILSSGSRTGHIHHHDVRVAEHHVATLTGHTQEVCGLKWSLDGRYLASGGNDNLVNI 342
Query: 445 WSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504
W V G T P+ + ++HQ AVKA+AWCPW NVLA+GGGT+DRHI WNV SG CL
Sbjct: 343 WPSVQGDSGDFT-PVQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGTCL 401
Query: 505 DSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP 564
++D SQVC++LW++ YKE +S HGFAQNQL+IWKYP++ KV EL GH+ARVLNL MSP
Sbjct: 402 SAVDAHSQVCSILWSTTYKEFISGHGFAQNQLVIWKYPTMAKVTELRGHTARVLNLTMSP 461
Query: 565 DETTVLSAGADETLRLW 581
D TV SA ADETLRLW
Sbjct: 462 DGVTVASAAADETLRLW 478
|
|
| ZFIN|ZDB-GENE-040426-2044 cdc20 "cell division cycle 20 homolog" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 828 (296.5 bits), Expect = 8.2e-124, Sum P(3) = 8.2e-124
Identities = 149/249 (59%), Positives = 184/249 (73%)
Query: 333 EGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSS 392
+ NE +CSV+W ++G L +GTS V+LWDV +K+ R+MDGH RVG L+WN +ILSS
Sbjct: 225 DDNEYICSVSWSKDGNFLAIGTSDCKVELWDVQYQKRLRSMDGHSARVGCLSWNDHILSS 284
Query: 393 GSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQH 452
GSR G I HDVR DH + HTQEVCGL WSPDGRYLASGGNDN++ IW G
Sbjct: 285 GSRSGLIHQHDVRVADHHIFTFGGHTQEVCGLTWSPDGRYLASGGNDNMMYIWPMTTGSE 344
Query: 453 TFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQ 512
Q IH+LS HQ AVKA+AWCPW PN+ ASGGGT+DRHI WN SSG+C+ S+DT SQ
Sbjct: 345 N---QAIHALSEHQGAVKALAWCPWQPNIPASGGGTSDRHIRIWNASSGSCISSLDTCSQ 401
Query: 513 VCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSA 572
V +L++ +YKELVS HGFA ++++IWKYPS KV E GH AR+LNLA+SPD +T+ S
Sbjct: 402 VSSLVFAPNYKELVSGHGFAHDKVVIWKYPSFAKVTEHEGHEARILNLALSPDGSTLASI 461
Query: 573 GADETLRLW 581
ADET+RLW
Sbjct: 462 AADETIRLW 470
|
|
| FB|FBgn0001086 fzy "fizzy" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 902 (322.6 bits), Expect = 2.2e-105, Sum P(2) = 2.2e-105
Identities = 159/256 (62%), Positives = 203/256 (79%)
Query: 326 IDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW 385
I+ L + E + S++WIQEG +L +G S G V+LWD S K+ R MDGH RVG+LAW
Sbjct: 242 IEQLTEFEEGDYAGSLSWIQEGQILAIGNSTGAVELWDCSKVKRLRVMDGHSARVGSLAW 301
Query: 386 NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIW 445
N++++SSGSR G IVHHDVR+R+HK++ L HTQEVCGLKWS D +YLASGGNDNL+N+W
Sbjct: 302 NSFLVSSGSRDGTIVHHDVRAREHKLSTLSGHTQEVCGLKWSTDFKYLASGGNDNLVNVW 361
Query: 446 SGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLD 505
S G +T P+H + HQAAV+A+AWCPW P+ LASGGGTADR I FWNV++G +
Sbjct: 362 SAASGGVGTATDPLHKFNDHQAAVRALAWCPWQPSTLASGGGTADRCIKFWNVNNGTLMK 421
Query: 506 SIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPD 565
S+D+KSQVC+LL++ YKEL+SAHGFA NQL IWKYP++VK A+L GH++RVL +AMSPD
Sbjct: 422 SVDSKSQVCSLLFSRHYKELISAHGFANNQLTIWKYPTMVKQADLTGHTSRVLQMAMSPD 481
Query: 566 ETTVLSAGADETLRLW 581
+TV+SAGADETLRLW
Sbjct: 482 GSTVISAGADETLRLW 497
|
|
| TAIR|locus:2119151 CDC20.1 "AT4G33270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 717 (257.5 bits), Expect = 1.1e-98, Sum P(3) = 1.1e-98
Identities = 132/245 (53%), Positives = 175/245 (71%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDG-HDVRVGALAWNTYILSSGSRC 396
V S+ W +G + VG + VQLWD ++ ++ RT+ G H RVG+LAWN +IL++G
Sbjct: 185 VTSINWAPDGRHVAVGLNNSEVQLWDSASNRQLRTLKGGHQSRVGSLAWNNHILTTGGMD 244
Query: 397 GNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFST 456
G I+++DVR R V + HTQEVCGLKWS G+ LASGGNDN+++IW +T
Sbjct: 245 GLIINNDVRIRSPIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTT 304
Query: 457 QPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCAL 516
Q +H L H +AVKA+AWCP+ N+LA+GGG DR I FWN +GACL+S+DT SQVC+L
Sbjct: 305 QWLHRLEEHTSAVKALAWCPFQANLLATGGGGGDRTIKFWNTHTGACLNSVDTGSQVCSL 364
Query: 517 LWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADE 576
LW+ + +EL+S+HGF QNQL +WKYPS+VK+AEL GH++RVL +A SPD TV SA DE
Sbjct: 365 LWSKNERELLSSHGFTQNQLTLWKYPSMVKMAELTGHTSRVLYMAQSPDGCTVASAAGDE 424
Query: 577 TLRLW 581
TLR W
Sbjct: 425 TLRFW 429
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q54MZ3 | CDC20_DICDI | No assigned EC number | 0.5098 | 0.5238 | 0.6392 | yes | N/A |
| Q9JJ66 | CDC20_MOUSE | No assigned EC number | 0.5396 | 0.5763 | 0.7034 | yes | N/A |
| Q62623 | CDC20_RAT | No assigned EC number | 0.5396 | 0.5763 | 0.7034 | yes | N/A |
| Q5H7C0 | CDC20_PIG | No assigned EC number | 0.5502 | 0.5763 | 0.7034 | yes | N/A |
| Q12834 | CDC20_HUMAN | No assigned EC number | 0.5476 | 0.5763 | 0.7034 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 609 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-38 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-30 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-29 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-20 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-20 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-16 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-13 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-12 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-05 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 4e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 9e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 9e-38
Identities = 74/248 (29%), Positives = 120/248 (48%), Gaps = 15/248 (6%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSR 395
V VA +G L G+S T++LWD+ + RT+ GH V ++A+ + ILSS SR
Sbjct: 54 VRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR 113
Query: 396 CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS 455
I DV + + L+ HT V + +SPDG ++AS D + +W G+
Sbjct: 114 DKTIKVWDVETGK-CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK---- 168
Query: 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQ-VC 514
+ +L+ H V ++A+ P +L+S D I W++S+G CL ++ V
Sbjct: 169 --CVATLTGHTGEVNSVAFSPDGEKLLSSSS---DGTIKLWDLSTGKCLGTLRGHENGVN 223
Query: 515 ALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGA 574
++ ++ D L S + +W + V L GH+ V +LA SPD + S A
Sbjct: 224 SVAFSPDGYLLASGS--EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA 281
Query: 575 DETLRLWK 582
D T+R+W
Sbjct: 282 DGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 66/249 (26%), Positives = 118/249 (47%), Gaps = 19/249 (7%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGH---DVRVGALAWNTYILSSGS 394
V VA+ +G +L G+ GT+++WD+ + RT+ GH V A A TY+ S S
Sbjct: 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS 71
Query: 395 -RCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHT 453
+ + D+ + V L HT V + +SPDGR L+S D + +W
Sbjct: 72 DKTIRL--WDLET-GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW------DV 122
Query: 454 FSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT-KSQ 512
+ + + +L H V ++A+ P +AS D I W++ +G C+ ++ +
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSS--QDGTIKLWDLRTGKCVATLTGHTGE 179
Query: 513 VCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSA 572
V ++ ++ D ++L+S + + +W + + L GH V ++A SPD + S
Sbjct: 180 VNSVAFSPDGEKLLS--SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237
Query: 573 GADETLRLW 581
D T+R+W
Sbjct: 238 SEDGTIRVW 246
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 121 bits (303), Expect = 2e-29
Identities = 76/262 (29%), Positives = 132/262 (50%), Gaps = 11/262 (4%)
Query: 338 VCSVAWIQEGYMLGVGTSL-GTVQLWDVSAKKKCR-TMDGH-DVRVGALAWNTYILSSGS 394
V S+A+ +G +L S GT++LWD+S K R T+ GH D V + + + +L+SGS
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS 260
Query: 395 RCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTF 454
G I D+RS + L H+ V + +SPDG+ LASG +D + +W G
Sbjct: 261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG---- 316
Query: 455 STQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVC 514
+L H+ V ++++ P +++ GG+ D I W++ +G L +++ S V
Sbjct: 317 KLLSSLTLKGHEGPVSSLSFSPDGSLLVS--GGSDDGTIRLWDLRTGKPLKTLEGHSNVL 374
Query: 515 ALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGA 574
++ ++ D V + G + +W + + L GH++RV +L SPD ++ S +
Sbjct: 375 SVSFSPD--GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS 432
Query: 575 DETLRLWKIFEKVKSKKKEIKN 596
D T+RLW + +KS
Sbjct: 433 DNTIRLWDLKTSLKSVSFSPDG 454
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.8 bits (234), Expect = 1e-20
Identities = 82/309 (26%), Positives = 150/309 (48%), Gaps = 20/309 (6%)
Query: 306 ICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVS 365
L+ L S + + L+ +++ S+A+ +G +L G+S GT++LWD+
Sbjct: 36 SESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLD 95
Query: 366 AKKKC-RTMDG-HDVRVGALAW-----NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHT 418
+K ++++G HD V LA N+ +L+S S G + D+ + + L+ H+
Sbjct: 96 NGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHS 155
Query: 419 QEVCGLKWSPDGRYLASGGN-DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW 477
+ V L +SPDG+ LASG + D + +W + +P+ +L+ H V ++A+ P
Sbjct: 156 ESVTSLAFSPDGKLLASGSSLDGTIKLWD------LRTGKPLSTLAGHTDPVSSLAFSPD 209
Query: 478 SPNVLASGGGTADRHIYFWNVSSGACL-DSIDTKSQVCALLWNSDYKELVSAHGFAQNQL 536
++ASG +D I W++S+G L ++ S ++ D L S G + +
Sbjct: 210 GGLLIASGS--SDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLAS--GSSDGTI 265
Query: 537 IIWKYPSLVK-VAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEIK 595
+W S + L GHS+ VL++A SPD + S +D T+RLW + +K
Sbjct: 266 RLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325
Query: 596 NNASKFNSM 604
+ +S+
Sbjct: 326 GHEGPVSSL 334
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 4e-20
Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 33/177 (18%)
Query: 275 IDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL 332
+ +S V + + G+I LW+ T KC+ L
Sbjct: 141 VAFSPDGTFVASSSQDGTIKLWDLR------------------TGKCVAT---------L 173
Query: 333 EG-NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYI 389
G V SVA+ +G L +S GT++LWD+S K T+ GH+ V ++A+ + Y+
Sbjct: 174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL 233
Query: 390 LSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWS 446
L+SGS G I D+R+ + V L HT V L WSPDG+ LASG D + IW
Sbjct: 234 LASGSEDGTIRVWDLRTGE-CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 7e-16
Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 52/170 (30%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L+ HT V + +SPDG+ LA+G D + +W + + + +L H V+ +A
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWD------LETGELLRTLKGHTGPVRDVA 58
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQ 533
LASG D+ I W++ +G C
Sbjct: 59 ASADG-TYLASGSS--DKTIRLWDLETGEC------------------------------ 85
Query: 534 NQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKI 583
V L GH++ V ++A SPD + S+ D+T+++W +
Sbjct: 86 -------------VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.3 bits (173), Expect = 4e-13
Identities = 53/248 (21%), Positives = 102/248 (41%), Gaps = 15/248 (6%)
Query: 367 KKKCRTMDGHDVRVGALAWNT---YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423
+ GH+ + ++A++ +LS S + +L H V
Sbjct: 55 DLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSK 114
Query: 424 LKW-SPDGRYLAS--GGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPN 480
L SPDG + D + +W + + I +L H +V ++A+ P
Sbjct: 115 LALSSPDGNSILLASSSLDGTVKLW-----DLSTPGKLIRTLEGHSESVTSLAFSP-DGK 168
Query: 481 VLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWK 540
+LASG D I W++ +G L ++ + + L S L+ A G + + +W
Sbjct: 169 LLASGSS-LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227
Query: 541 YPS-LVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEIKNNAS 599
+ + + L GHS V++ + SPD + + S +D T+RLW + + +++S
Sbjct: 228 LSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS 286
Query: 600 KFNSMFNS 607
+ F+
Sbjct: 287 VLSVAFSP 294
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.7 bits (169), Expect = 1e-12
Identities = 48/212 (22%), Positives = 83/212 (39%), Gaps = 8/212 (3%)
Query: 375 GHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLA 434
G + +L S + V D LL+ H + + +SPDG L
Sbjct: 22 GPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLL 81
Query: 435 SGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIY 494
SG +D + +W G+ + H ++V +A N + + D +
Sbjct: 82 SGSSDGTIKLWDLDNGEKLIKSL----EGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137
Query: 495 FWNVSSGACLDSI--DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552
W++S+ L V +L ++ D K L S + +W + ++ L G
Sbjct: 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLD-GTIKLWDLRTGKPLSTLAG 196
Query: 553 HSARVLNLAMSPD-ETTVLSAGADETLRLWKI 583
H+ V +LA SPD + S +D T+RLW +
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-07
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 410 KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWS 446
+ L+ HT V + +SPDG LASG +D + +W
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-07
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 409 HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWS 446
+ L+ HT V + +SPDG+YLASG +D + +W
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-05
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 545 VKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWK 582
+ L GH+ V ++A SPD + S D T+R+W
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-05
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 543 SLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWK 582
S + L GH+ V ++A SPD + S D T++LW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 4e-05
Identities = 36/153 (23%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 433 LASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH 492
+AS + ++ +W +Q + + H+ V +I + P +LASG + D
Sbjct: 548 VASSNFEGVVQVWD------VARSQLVTEMKEHEKRVWSIDYSSADPTLLASG--SDDGS 599
Query: 493 IYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIW--KYPSLVKVAEL 550
+ W+++ G + +I TK+ +C + + S+ + A G A +++ + + P L + +
Sbjct: 600 VKLWSINQGVSIGTIKTKANICCVQFPSESGRSL-AFGSADHKVYYYDLRNPKL-PLCTM 657
Query: 551 HGHSARVLNLAMSPDETTVLSAGADETLRLWKI 583
GHS + ++ D +T++S+ D TL+LW +
Sbjct: 658 IGHS-KTVSYVRFVDSSTLVSSSTDNTLKLWDL 689
|
Length = 793 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 2e-04
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 455 STQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWN 497
S + + +L H V ++A+ P LASG D I W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDG-KYLASGS--DDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 9e-04
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 457 QPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWN 497
+ + +L H V ++A+ P N+LASG D + W+
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDG-NLLASGS--DDGTVRVWD 39
|
Length = 39 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 609 | |||
| KOG0305|consensus | 484 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0650|consensus | 733 | 100.0 | ||
| KOG0295|consensus | 406 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0284|consensus | 464 | 100.0 | ||
| KOG0265|consensus | 338 | 100.0 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0266|consensus | 456 | 100.0 | ||
| KOG0296|consensus | 399 | 100.0 | ||
| KOG0645|consensus | 312 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0285|consensus | 460 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| KOG0295|consensus | 406 | 99.98 | ||
| KOG0318|consensus | 603 | 99.98 | ||
| KOG0279|consensus | 315 | 99.98 | ||
| KOG0281|consensus | 499 | 99.98 | ||
| KOG0286|consensus | 343 | 99.98 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0284|consensus | 464 | 99.97 | ||
| KOG0276|consensus | 794 | 99.97 | ||
| KOG0285|consensus | 460 | 99.97 | ||
| KOG0266|consensus | 456 | 99.97 | ||
| KOG0318|consensus | 603 | 99.97 | ||
| KOG0277|consensus | 311 | 99.97 | ||
| KOG0319|consensus | 775 | 99.97 | ||
| KOG0282|consensus | 503 | 99.97 | ||
| KOG0281|consensus | 499 | 99.97 | ||
| KOG0319|consensus | 775 | 99.97 | ||
| KOG0313|consensus | 423 | 99.97 | ||
| KOG0276|consensus | 794 | 99.97 | ||
| KOG0306|consensus | 888 | 99.97 | ||
| KOG0293|consensus | 519 | 99.97 | ||
| KOG0274|consensus | 537 | 99.97 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0278|consensus | 334 | 99.96 | ||
| KOG0292|consensus | 1202 | 99.96 | ||
| KOG0316|consensus | 307 | 99.96 | ||
| KOG0316|consensus | 307 | 99.96 | ||
| KOG0275|consensus | 508 | 99.96 | ||
| KOG0645|consensus | 312 | 99.96 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0310|consensus | 487 | 99.96 | ||
| KOG0643|consensus | 327 | 99.95 | ||
| KOG0288|consensus | 459 | 99.95 | ||
| KOG0973|consensus | 942 | 99.95 | ||
| KOG0277|consensus | 311 | 99.95 | ||
| KOG0283|consensus | 712 | 99.95 | ||
| KOG0313|consensus | 423 | 99.95 | ||
| KOG0294|consensus | 362 | 99.95 | ||
| KOG0296|consensus | 399 | 99.95 | ||
| KOG0292|consensus | 1202 | 99.95 | ||
| KOG0772|consensus | 641 | 99.95 | ||
| KOG1446|consensus | 311 | 99.95 | ||
| KOG0310|consensus | 487 | 99.95 | ||
| KOG0306|consensus | 888 | 99.95 | ||
| KOG0265|consensus | 338 | 99.94 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG0282|consensus | 503 | 99.94 | ||
| KOG1408|consensus | 1080 | 99.94 | ||
| KOG0289|consensus | 506 | 99.94 | ||
| KOG1446|consensus | 311 | 99.94 | ||
| KOG1407|consensus | 313 | 99.94 | ||
| KOG0264|consensus | 422 | 99.94 | ||
| KOG0275|consensus | 508 | 99.93 | ||
| KOG1407|consensus | 313 | 99.93 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG0641|consensus | 350 | 99.93 | ||
| KOG0293|consensus | 519 | 99.93 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG0640|consensus | 430 | 99.93 | ||
| KOG0647|consensus | 347 | 99.93 | ||
| KOG0274|consensus | 537 | 99.93 | ||
| KOG0301|consensus | 745 | 99.92 | ||
| KOG0269|consensus | 839 | 99.92 | ||
| KOG0973|consensus | 942 | 99.92 | ||
| KOG0264|consensus | 422 | 99.92 | ||
| KOG0639|consensus | 705 | 99.92 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.92 | |
| KOG0288|consensus | 459 | 99.92 | ||
| KOG0268|consensus | 433 | 99.92 | ||
| KOG1539|consensus | 910 | 99.92 | ||
| KOG0268|consensus | 433 | 99.92 | ||
| KOG0305|consensus | 484 | 99.92 | ||
| KOG0283|consensus | 712 | 99.91 | ||
| KOG0308|consensus | 735 | 99.91 | ||
| KOG1036|consensus | 323 | 99.91 | ||
| KOG0299|consensus | 479 | 99.91 | ||
| KOG1274|consensus | 933 | 99.91 | ||
| KOG1036|consensus | 323 | 99.91 | ||
| KOG0647|consensus | 347 | 99.91 | ||
| KOG0300|consensus | 481 | 99.91 | ||
| KOG0278|consensus | 334 | 99.91 | ||
| KOG0646|consensus | 476 | 99.91 | ||
| KOG0640|consensus | 430 | 99.9 | ||
| KOG2096|consensus | 420 | 99.9 | ||
| KOG0641|consensus | 350 | 99.9 | ||
| KOG0308|consensus | 735 | 99.9 | ||
| KOG1539|consensus | 910 | 99.9 | ||
| KOG0321|consensus | 720 | 99.9 | ||
| KOG1274|consensus | 933 | 99.9 | ||
| KOG1332|consensus | 299 | 99.89 | ||
| KOG1332|consensus | 299 | 99.89 | ||
| KOG0289|consensus | 506 | 99.89 | ||
| KOG0299|consensus | 479 | 99.89 | ||
| KOG2445|consensus | 361 | 99.89 | ||
| KOG0643|consensus | 327 | 99.89 | ||
| KOG4283|consensus | 397 | 99.89 | ||
| KOG2055|consensus | 514 | 99.88 | ||
| KOG0772|consensus | 641 | 99.88 | ||
| KOG2106|consensus | 626 | 99.88 | ||
| KOG4328|consensus | 498 | 99.88 | ||
| KOG4378|consensus | 673 | 99.88 | ||
| KOG1408|consensus | 1080 | 99.88 | ||
| KOG1273|consensus | 405 | 99.88 | ||
| KOG0270|consensus | 463 | 99.88 | ||
| KOG0269|consensus | 839 | 99.88 | ||
| KOG0301|consensus | 745 | 99.88 | ||
| KOG0267|consensus | 825 | 99.88 | ||
| KOG0300|consensus | 481 | 99.87 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.87 | |
| KOG0307|consensus | 1049 | 99.87 | ||
| KOG0267|consensus | 825 | 99.86 | ||
| KOG4283|consensus | 397 | 99.86 | ||
| KOG2048|consensus | 691 | 99.86 | ||
| KOG0639|consensus | 705 | 99.85 | ||
| KOG0294|consensus | 362 | 99.85 | ||
| KOG0646|consensus | 476 | 99.85 | ||
| KOG2106|consensus | 626 | 99.85 | ||
| KOG0302|consensus | 440 | 99.84 | ||
| KOG0307|consensus | 1049 | 99.84 | ||
| KOG0270|consensus | 463 | 99.84 | ||
| KOG1063|consensus | 764 | 99.84 | ||
| KOG2048|consensus | 691 | 99.84 | ||
| KOG0302|consensus | 440 | 99.84 | ||
| KOG2919|consensus | 406 | 99.84 | ||
| KOG2055|consensus | 514 | 99.83 | ||
| KOG4378|consensus | 673 | 99.83 | ||
| KOG1538|consensus | 1081 | 99.83 | ||
| KOG1063|consensus | 764 | 99.82 | ||
| KOG1587|consensus | 555 | 99.82 | ||
| KOG1009|consensus | 434 | 99.81 | ||
| KOG1445|consensus | 1012 | 99.81 | ||
| KOG1034|consensus | 385 | 99.81 | ||
| KOG1188|consensus | 376 | 99.8 | ||
| KOG4328|consensus | 498 | 99.8 | ||
| KOG0650|consensus | 733 | 99.8 | ||
| KOG0290|consensus | 364 | 99.8 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.79 | |
| KOG2445|consensus | 361 | 99.79 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.78 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.78 | |
| KOG2919|consensus | 406 | 99.78 | ||
| KOG0303|consensus | 472 | 99.77 | ||
| KOG1007|consensus | 370 | 99.77 | ||
| KOG0642|consensus | 577 | 99.76 | ||
| KOG0303|consensus | 472 | 99.75 | ||
| KOG2096|consensus | 420 | 99.75 | ||
| KOG0290|consensus | 364 | 99.75 | ||
| KOG1273|consensus | 405 | 99.74 | ||
| KOG0321|consensus | 720 | 99.74 | ||
| KOG4227|consensus | 609 | 99.74 | ||
| KOG0649|consensus | 325 | 99.73 | ||
| KOG0322|consensus | 323 | 99.72 | ||
| KOG1524|consensus | 737 | 99.71 | ||
| KOG1517|consensus | 1387 | 99.7 | ||
| KOG1587|consensus | 555 | 99.7 | ||
| KOG0644|consensus | 1113 | 99.69 | ||
| KOG1007|consensus | 370 | 99.69 | ||
| KOG1188|consensus | 376 | 99.69 | ||
| KOG1445|consensus | 1012 | 99.68 | ||
| KOG1963|consensus | 792 | 99.68 | ||
| KOG2110|consensus | 391 | 99.68 | ||
| KOG2110|consensus | 391 | 99.67 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG1240|consensus | 1431 | 99.65 | ||
| KOG1034|consensus | 385 | 99.65 | ||
| KOG4227|consensus | 609 | 99.64 | ||
| KOG2139|consensus | 445 | 99.64 | ||
| KOG0642|consensus | 577 | 99.63 | ||
| KOG0649|consensus | 325 | 99.63 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.62 | |
| KOG1310|consensus | 758 | 99.62 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.62 | |
| KOG2111|consensus | 346 | 99.62 | ||
| KOG0771|consensus | 398 | 99.61 | ||
| KOG1009|consensus | 434 | 99.61 | ||
| KOG1334|consensus | 559 | 99.6 | ||
| KOG1523|consensus | 361 | 99.6 | ||
| KOG1523|consensus | 361 | 99.6 | ||
| KOG1538|consensus | 1081 | 99.59 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG0644|consensus | 1113 | 99.59 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.58 | |
| KOG1517|consensus | 1387 | 99.58 | ||
| KOG1963|consensus | 792 | 99.58 | ||
| KOG2394|consensus | 636 | 99.57 | ||
| KOG2139|consensus | 445 | 99.57 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.56 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.56 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.55 | |
| KOG1272|consensus | 545 | 99.55 | ||
| KOG2111|consensus | 346 | 99.55 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.55 | |
| KOG1240|consensus | 1431 | 99.54 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.53 | |
| KOG3881|consensus | 412 | 99.52 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.52 | |
| KOG1310|consensus | 758 | 99.5 | ||
| KOG1524|consensus | 737 | 99.49 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG0771|consensus | 398 | 99.49 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG4497|consensus | 447 | 99.48 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.47 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.47 | |
| KOG1334|consensus | 559 | 99.45 | ||
| KOG2394|consensus | 636 | 99.44 | ||
| KOG2315|consensus | 566 | 99.44 | ||
| KOG4497|consensus | 447 | 99.44 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.44 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.42 | |
| KOG3881|consensus | 412 | 99.42 | ||
| KOG2321|consensus | 703 | 99.42 | ||
| KOG1354|consensus | 433 | 99.42 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.41 | |
| KOG1272|consensus | 545 | 99.41 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.38 | |
| KOG2321|consensus | 703 | 99.37 | ||
| KOG0322|consensus | 323 | 99.37 | ||
| KOG0309|consensus | 1081 | 99.36 | ||
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.35 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.35 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.35 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.34 | |
| KOG2315|consensus | 566 | 99.34 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.34 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.28 | |
| KOG0280|consensus | 339 | 99.27 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.26 | |
| KOG1409|consensus | 404 | 99.25 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.25 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.24 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.23 | |
| KOG4547|consensus | 541 | 99.23 | ||
| KOG2041|consensus | 1189 | 99.22 | ||
| KOG2314|consensus | 698 | 99.22 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.21 | |
| KOG1912|consensus | 1062 | 99.2 | ||
| KOG0974|consensus | 967 | 99.2 | ||
| KOG4547|consensus | 541 | 99.2 | ||
| PF08145 | 260 | BOP1NT: BOP1NT (NUC169) domain; InterPro: IPR01295 | 99.16 | |
| KOG0280|consensus | 339 | 99.13 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.11 | |
| KOG1354|consensus | 433 | 99.11 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.1 | |
| KOG1064|consensus | 2439 | 99.09 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.05 | |
| KOG0974|consensus | 967 | 99.03 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.01 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.0 | |
| KOG2041|consensus | 1189 | 98.99 | ||
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.95 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.94 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.93 | |
| KOG4190|consensus | 1034 | 98.93 | ||
| KOG3914|consensus | 390 | 98.92 | ||
| KOG1064|consensus | 2439 | 98.91 | ||
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.91 | |
| KOG1912|consensus | 1062 | 98.91 | ||
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.89 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.89 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.89 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.85 | |
| KOG4532|consensus | 344 | 98.82 | ||
| KOG4532|consensus | 344 | 98.8 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.77 | |
| KOG3914|consensus | 390 | 98.74 | ||
| KOG1832|consensus | 1516 | 98.73 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.71 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.71 | |
| KOG1409|consensus | 404 | 98.7 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.69 | |
| KOG1920|consensus | 1265 | 98.68 | ||
| KOG0309|consensus | 1081 | 98.67 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.66 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.66 | |
| KOG4714|consensus | 319 | 98.66 | ||
| KOG4190|consensus | 1034 | 98.65 | ||
| KOG2314|consensus | 698 | 98.63 | ||
| KOG1645|consensus | 463 | 98.63 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.59 | |
| KOG1275|consensus | 1118 | 98.58 | ||
| KOG2695|consensus | 425 | 98.56 | ||
| KOG4714|consensus | 319 | 98.51 | ||
| KOG1275|consensus | 1118 | 98.51 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.5 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.48 | |
| KOG0882|consensus | 558 | 98.47 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.47 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.45 | |
| KOG2114|consensus | 933 | 98.44 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.41 | |
| KOG2695|consensus | 425 | 98.39 | ||
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.31 | |
| KOG1008|consensus | 783 | 98.3 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.3 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.3 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.29 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.25 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.24 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.24 | |
| KOG2066|consensus | 846 | 98.21 | ||
| KOG3621|consensus | 726 | 98.19 | ||
| KOG0882|consensus | 558 | 98.16 | ||
| KOG3617|consensus | 1416 | 98.16 | ||
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.15 | |
| KOG1832|consensus | 1516 | 98.11 | ||
| KOG2066|consensus | 846 | 98.09 | ||
| KOG1920|consensus | 1265 | 98.07 | ||
| KOG2114|consensus | 933 | 98.07 | ||
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.07 | |
| KOG1008|consensus | 783 | 98.06 | ||
| KOG1645|consensus | 463 | 98.05 | ||
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.03 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.02 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.91 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.91 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.86 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.86 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.84 | |
| KOG4649|consensus | 354 | 97.82 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.81 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.81 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.79 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.79 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.79 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.78 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.74 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.65 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.64 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.6 | |
| KOG3621|consensus | 726 | 97.58 | ||
| KOG4649|consensus | 354 | 97.53 | ||
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.53 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.51 | |
| KOG3617|consensus | 1416 | 97.51 | ||
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.48 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.46 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.39 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.27 | |
| KOG4499|consensus | 310 | 97.26 | ||
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.25 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.21 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.11 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.11 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.1 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.06 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.05 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.02 | |
| KOG4640|consensus | 665 | 96.98 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 96.93 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.89 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.87 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.83 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.82 | |
| KOG4640|consensus | 665 | 96.8 | ||
| KOG4441|consensus | 571 | 96.78 | ||
| KOG4441|consensus | 571 | 96.76 | ||
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.69 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.67 | |
| KOG2395|consensus | 644 | 96.62 | ||
| KOG1897|consensus | 1096 | 96.6 | ||
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.56 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.55 | |
| KOG2079|consensus | 1206 | 96.52 | ||
| KOG3630|consensus | 1405 | 96.51 | ||
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.51 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.35 | |
| PRK10115 | 686 | protease 2; Provisional | 96.33 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.32 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.31 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.01 | |
| KOG2444|consensus | 238 | 95.92 | ||
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.89 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.72 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.64 | |
| KOG2395|consensus | 644 | 95.64 | ||
| KOG3630|consensus | 1405 | 95.52 | ||
| KOG1897|consensus | 1096 | 95.51 | ||
| PRK10115 | 686 | protease 2; Provisional | 95.49 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.45 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.43 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.42 | |
| KOG2079|consensus | 1206 | 95.31 | ||
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.25 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.14 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.13 | |
| KOG2444|consensus | 238 | 95.12 | ||
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.99 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.91 | |
| KOG1916|consensus | 1283 | 94.89 | ||
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.87 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 94.84 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 94.78 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 94.73 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.62 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.47 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.41 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.26 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.25 | |
| KOG4499|consensus | 310 | 93.98 | ||
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 93.97 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.83 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 93.71 | |
| KOG2280|consensus | 829 | 93.68 | ||
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 93.29 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 93.15 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 92.99 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 92.82 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 92.52 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 92.32 | |
| KOG2377|consensus | 657 | 92.26 | ||
| KOG4460|consensus | 741 | 92.24 | ||
| PRK13684 | 334 | Ycf48-like protein; Provisional | 91.87 | |
| KOG2280|consensus | 829 | 91.66 | ||
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.5 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 91.07 | |
| KOG2377|consensus | 657 | 90.88 | ||
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 90.76 | |
| KOG2247|consensus | 615 | 90.66 | ||
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 90.17 | |
| KOG2247|consensus | 615 | 89.9 | ||
| KOG1916|consensus | 1283 | 89.82 | ||
| KOG1983|consensus | 993 | 89.68 | ||
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 89.58 | |
| KOG1898|consensus | 1205 | 88.9 | ||
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 88.62 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 88.59 | |
| KOG4659|consensus | 1899 | 88.27 | ||
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 87.97 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 87.68 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 87.36 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 87.35 | |
| PLN02153 | 341 | epithiospecifier protein | 87.29 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 87.23 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 87.15 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 86.72 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 86.25 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 86.19 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 86.01 | |
| PLN02193 | 470 | nitrile-specifier protein | 85.55 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 85.54 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 85.19 | |
| KOG4460|consensus | 741 | 85.11 | ||
| KOG1900|consensus | 1311 | 84.8 | ||
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 84.63 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 83.73 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 83.61 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 83.17 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 83.15 | |
| PLN02193 | 470 | nitrile-specifier protein | 82.72 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 82.65 | |
| PLN02153 | 341 | epithiospecifier protein | 82.32 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 82.04 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 81.85 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 81.49 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 81.29 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 81.16 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 80.59 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 80.53 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 80.5 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 80.16 |
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-57 Score=471.49 Aligned_cols=314 Identities=56% Similarity=1.020 Sum_probs=300.0
Q ss_pred CCCCccccCCCccccccCCccCCceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccc
Q psy4876 246 SKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRA 325 (609)
Q Consensus 246 ~~~~~r~i~~~p~~il~ap~~~~~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (609)
+++..|++++.|.++||+|++.+|||.+.++|+..++||++.+..||+|+..+ +.
T Consensus 154 ~r~~~r~~~~~p~rvLDaP~l~dDfY~nlldWss~n~laValg~~vylW~~~s-------------------------~~ 208 (484)
T KOG0305|consen 154 PRKLKRKIPQTPYRVLDAPGLQDDFYLNLLDWSSANVLAVALGQSVYLWSASS-------------------------GS 208 (484)
T ss_pred cccccCcccCChhhhccCCcccccHhhhHhhcccCCeEEEEecceEEEEecCC-------------------------Cc
Confidence 56678999999999999999999999999999999999999999999999999 88
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecC-CCCceEEEEecCCEEEEEecCCeEEEEEc
Q psy4876 326 IDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDG-HDVRVGALAWNTYILSSGSRCGNIVHHDV 404 (609)
Q Consensus 326 ~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~~~~~L~sgs~dg~I~iwd~ 404 (609)
+..+.++. ...|+++.|+++|.+||+|..+|.|.|||..+.+.++.+.+ |..+|.+++|++..+.+|+.||.|.++|+
T Consensus 209 v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 209 VTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDV 287 (484)
T ss_pred eEEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEE
Confidence 88888884 89999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 405 RSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 405 ~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
+..++....+.+|.++||+++|++|+.+||+|++|+.|.|||.... .++..+..|.++|.+++|||....+||+
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~------~p~~~~~~H~aAVKA~awcP~q~~lLAs 361 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP------EPKFTFTEHTAAVKALAWCPWQSGLLAT 361 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc------cccEEEeccceeeeEeeeCCCccCceEE
Confidence 9987666678899999999999999999999999999999999665 7889999999999999999999999999
Q ss_pred EeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeC
Q psy4876 485 GGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP 564 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp 564 (609)
|||+.|++|++||+.+|+.+..+...++|+++.|++.+++|++++|+.++.|.||++++...+..+.+|..+|.+++++|
T Consensus 362 GGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP 441 (484)
T KOG0305|consen 362 GGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP 441 (484)
T ss_pred cCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 565 DETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 565 dg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
||..|++|+.|++++||++++..+...
T Consensus 442 dg~~i~t~a~DETlrfw~~f~~~~~~~ 468 (484)
T KOG0305|consen 442 DGETIVTGAADETLRFWNLFDERPKST 468 (484)
T ss_pred CCCEEEEecccCcEEeccccCCCCccc
Confidence 999999999999999999999744433
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=328.42 Aligned_cols=279 Identities=28% Similarity=0.527 Sum_probs=248.0
Q ss_pred eeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
-.|-|+.|+|++ +++++.|.++++||+.+ .. ++.+.. |...|.||+|+||
T Consensus 116 e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T-------------------------eT--p~~t~KgH~~WVlcvawsPD 168 (480)
T KOG0271|consen 116 EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT-------------------------ET--PLFTCKGHKNWVLCVAWSPD 168 (480)
T ss_pred CcEEEEEecCCCceEEecCCCceEEeeccCC-------------------------CC--cceeecCCccEEEEEEECCC
Confidence 347889999986 78899999999999988 33 455566 9999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCee-EEEecCCCCceEEEEec-------CCEEEEEecCCeEEEEEcCCCCeeEEEEccCC
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKK-CRTMDGHDVRVGALAWN-------TYILSSGSRCGNIVHHDVRSRDHKVALLQNHT 418 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~l~~~-------~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 418 (609)
|+.||+|+.||+|++||..+|++ .+.+.+|...|++++|. ..+|++++.||.|+|||+..+ ..+..+.+|+
T Consensus 169 gk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~-~~~~~lsgHT 247 (480)
T KOG0271|consen 169 GKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG-TCVRTLSGHT 247 (480)
T ss_pred cchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-eEEEEeccCc
Confidence 99999999999999999998865 46899999999999993 368999999999999999987 5889999999
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC----------------------------------------------
Q psy4876 419 QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQH---------------------------------------------- 452 (609)
Q Consensus 419 ~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~---------------------------------------------- 452 (609)
..|+|+.|--+| +|++|+.|++|++|+...|..
T Consensus 248 ~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~ 326 (480)
T KOG0271|consen 248 ASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALE 326 (480)
T ss_pred cceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHH
Confidence 999999998766 899999999999999765420
Q ss_pred ---------------------------CCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeE
Q psy4876 453 ---------------------------TFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLD 505 (609)
Q Consensus 453 ---------------------------~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~ 505 (609)
....+++..+.+|+.-|..+.|+||+ .++|++ +.|+.|++||.++|+.+.
T Consensus 327 rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~-r~IASa--SFDkSVkLW~g~tGk~la 403 (480)
T KOG0271|consen 327 RYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG-RYIASA--SFDKSVKLWDGRTGKFLA 403 (480)
T ss_pred HHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc-cEEEEe--ecccceeeeeCCCcchhh
Confidence 01124566778899999999999998 577776 599999999999999999
Q ss_pred EEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEE
Q psy4876 506 SIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWK 582 (609)
Q Consensus 506 ~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWd 582 (609)
++.+| ..|..++|+.|.++|++ |+.|.++++|++++.+....+.||.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 404 sfRGHv~~VYqvawsaDsRLlVS--~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 404 SFRGHVAAVYQVAWSADSRLLVS--GSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred hhhhccceeEEEEeccCccEEEE--cCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99966 68999999999999999 56999999999999999999999999999999999999999999999999995
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=326.30 Aligned_cols=284 Identities=24% Similarity=0.415 Sum_probs=258.9
Q ss_pred cccCCccCCceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCC
Q psy4876 260 ILDAPEIQNDYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNE 336 (609)
Q Consensus 260 il~ap~~~~~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~ 336 (609)
.|....+.++..|..+.||.++ +++++.+|.++||+..+ . ..++.+. |.+
T Consensus 166 ~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~-------------------------~--~~~~~l~gH~~ 218 (459)
T KOG0272|consen 166 ELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ-------------------------C--NLLQTLRGHTS 218 (459)
T ss_pred hhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCC-------------------------c--ceeEEEecccc
Confidence 3444556667778889999986 77799999999999976 3 5667777 999
Q ss_pred CeEEEEEccC--CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 337 NVCSVAWIQE--GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 337 ~V~~v~~spd--g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
.|.++.|+|. +..||+|+.||+|++|++.+...+..+.+|..+|..++| +|++|.+++.|.+-++||+++. ..+.
T Consensus 219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk-~ElL 297 (459)
T KOG0272|consen 219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK-SELL 297 (459)
T ss_pred ceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccc-hhhH
Confidence 9999999997 579999999999999999999999999999999999999 5899999999999999999997 4677
Q ss_pred EEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCe
Q psy4876 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH 492 (609)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~ 492 (609)
...+|...|.+++|++||.++++|+.|..-+|||++++ .++..+.+|..+|.+|+|+|+| +.+++|+ .|++
T Consensus 298 ~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg------r~im~L~gH~k~I~~V~fsPNG-y~lATgs--~Dnt 368 (459)
T KOG0272|consen 298 LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG------RCIMFLAGHIKEILSVAFSPNG-YHLATGS--SDNT 368 (459)
T ss_pred hhcccccccceeEecCCCceeeccCccchhheeecccC------cEEEEecccccceeeEeECCCc-eEEeecC--CCCc
Confidence 78899999999999999999999999999999999999 8999999999999999999998 7888874 8999
Q ss_pred EEEEECCCCceeEEEcCCC-CeEEEEEcC-CCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEE
Q psy4876 493 IYFWNVSSGACLDSIDTKS-QVCALLWNS-DYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVL 570 (609)
Q Consensus 493 I~iwd~~t~~~~~~~~~~~-~v~sl~~s~-~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~ 570 (609)
++|||++...++..+..|. -|+.+.|+| .|.+|++++ .|++++||...++.+++.+.||++.|.++.+++|+.+++
T Consensus 369 ~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas--yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~ 446 (459)
T KOG0272|consen 369 CKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS--YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIA 446 (459)
T ss_pred EEEeeecccccceecccccchhhheEecccCCeEEEEcc--cCcceeeecCCCcccchhhcCCccceEEEEeccCCceEE
Confidence 9999999999999998775 789999998 566677643 799999999999999999999999999999999999999
Q ss_pred EEECCCCEEEEE
Q psy4876 571 SAGADETLRLWK 582 (609)
Q Consensus 571 s~s~Dg~I~iWd 582 (609)
|++.|.++++|.
T Consensus 447 t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 447 TSSFDRTIKLWR 458 (459)
T ss_pred EeccCceeeecc
Confidence 999999999995
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=299.38 Aligned_cols=282 Identities=21% Similarity=0.415 Sum_probs=255.5
Q ss_pred ccccCCccCCceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCC
Q psy4876 259 RILDAPEIQNDYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNE 336 (609)
Q Consensus 259 ~il~ap~~~~~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~ 336 (609)
++|..+ .-.|.+++|++|. +++++.||.+.|||.-+ ........+ ...
T Consensus 49 r~LkGH----~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~T-------------------------tnK~haipl-~s~ 98 (343)
T KOG0286|consen 49 RTLKGH----LNKIYAMDWSTDSRRIVSASQDGKLIVWDSFT-------------------------TNKVHAIPL-PSS 98 (343)
T ss_pred EEeccc----ccceeeeEecCCcCeEEeeccCCeEEEEEccc-------------------------ccceeEEec-Cce
Confidence 555543 3358899999985 88999999999999988 554444444 678
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEeCCCC------eeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCe
Q psy4876 337 NVCSVAWIQEGYMLGVGTSLGTVQLWDVSAK------KKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDH 409 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~------~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~ 409 (609)
.|..++|+|.|+++|.|+-|....||++.+. ...+.+.+|.+-+.|+.| +...|++++.|.++.+||++++ +
T Consensus 99 WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g-~ 177 (343)
T KOG0286|consen 99 WVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETG-Q 177 (343)
T ss_pred eEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccc-e
Confidence 9999999999999999999999999999854 456789999999999999 7788899999999999999998 5
Q ss_pred eEEEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEecc
Q psy4876 410 KVALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGT 488 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs 488 (609)
.+..+.+|.+.|.+|+++| +++.|++|+-|+..++||++.+ ..++.|.+|...|.++.|.|+| .-+++| +
T Consensus 178 ~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~------~c~qtF~ghesDINsv~ffP~G-~afatG--S 248 (343)
T KOG0286|consen 178 QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG------QCVQTFEGHESDINSVRFFPSG-DAFATG--S 248 (343)
T ss_pred EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc------ceeEeecccccccceEEEccCC-Ceeeec--C
Confidence 8899999999999999999 9999999999999999999998 8999999999999999999998 566775 6
Q ss_pred CCCeEEEEECCCCceeEEEcCC---CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCC
Q psy4876 489 ADRHIYFWNVSSGACLDSIDTK---SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPD 565 (609)
Q Consensus 489 ~Dg~I~iwd~~t~~~~~~~~~~---~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spd 565 (609)
.|++.++||++....+..+.+. ..|++++|+..|++|++ |+.|..+.+||.-.++.+..|.+|..+|.++..+||
T Consensus 249 DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfa--gy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~D 326 (343)
T KOG0286|consen 249 DDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFA--GYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPD 326 (343)
T ss_pred CCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEe--eecCCceeEeeccccceEEEeeccCCeeEEEEECCC
Confidence 9999999999999998888765 38999999999999999 779999999999999999999999999999999999
Q ss_pred CCEEEEEECCCCEEEEE
Q psy4876 566 ETTVLSAGADETLRLWK 582 (609)
Q Consensus 566 g~~L~s~s~Dg~I~iWd 582 (609)
|.-|+||+.|.+||||.
T Consensus 327 G~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 327 GMAVATGSWDSTLRIWA 343 (343)
T ss_pred CcEEEecchhHheeecC
Confidence 99999999999999994
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=301.89 Aligned_cols=249 Identities=28% Similarity=0.440 Sum_probs=223.8
Q ss_pred eeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEc
Q psy4876 328 HLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDV 404 (609)
Q Consensus 328 ~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~ 404 (609)
+...+. |.+.|.|++|+|+|..||+|+.|.++++||+.+.....+.++|...|.|++| ++..|++|+.||+|.+||.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 344556 9999999999999999999999999999999999999999999999999999 7899999999999999999
Q ss_pred CCCCeeEEEEccCCCCeEEEEEcc-----CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCC
Q psy4876 405 RSRDHKVALLQNHTQEVCGLKWSP-----DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSP 479 (609)
Q Consensus 405 ~~~~~~~~~~~~h~~~V~~l~~sp-----dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 479 (609)
.+++.....+.+|...|++++|.| ..++||+++.||.|+|||+..+ .++..+.+|..+|+|+.|-.+
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~------~~~~~lsgHT~~VTCvrwGG~-- 258 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG------TCVRTLSGHTASVTCVRWGGE-- 258 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc------eEEEEeccCccceEEEEEcCC--
Confidence 999888899999999999999976 5779999999999999999988 889999999999999999754
Q ss_pred cEEEEEeccCCCeEEEEECCCCceeEEE----------------------------------------------------
Q psy4876 480 NVLASGGGTADRHIYFWNVSSGACLDSI---------------------------------------------------- 507 (609)
Q Consensus 480 ~llasggGs~Dg~I~iwd~~t~~~~~~~---------------------------------------------------- 507 (609)
.++++| +.|++|++|+...|.+...+
T Consensus 259 gliySg--S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~ 336 (480)
T KOG0271|consen 259 GLIYSG--SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG 336 (480)
T ss_pred ceEEec--CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence 488886 69999999998765321111
Q ss_pred ---------------------------c-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEE
Q psy4876 508 ---------------------------D-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLN 559 (609)
Q Consensus 508 ---------------------------~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~ 559 (609)
. +..-|..+.|+||++++++++ -|..|++|+..+|+.+..|+||-+.|..
T Consensus 337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaS--FDkSVkLW~g~tGk~lasfRGHv~~VYq 414 (480)
T KOG0271|consen 337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASAS--FDKSVKLWDGRTGKFLASFRGHVAAVYQ 414 (480)
T ss_pred ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEee--cccceeeeeCCCcchhhhhhhccceeEE
Confidence 0 112478899999999999965 7999999999999999999999999999
Q ss_pred EEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 560 LAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 560 l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
++|+.|.++|++|+.|.++++|++.+.+.
T Consensus 415 vawsaDsRLlVS~SkDsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 415 VAWSADSRLLVSGSKDSTLKVWDVRTKKL 443 (480)
T ss_pred EEeccCccEEEEcCCCceEEEEEeeeeee
Confidence 99999999999999999999999987654
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=277.62 Aligned_cols=278 Identities=23% Similarity=0.344 Sum_probs=239.4
Q ss_pred eEEEEEecCC---CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 271 YLNLIDWSHF---NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 271 ~v~~l~wsp~---~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
.|..++-.+. -++.++.|.++.+|++.... .. .|. .+..+. |...|..+..++|
T Consensus 17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd-~~-------------------~G~--~~r~~~GHsH~v~dv~~s~d 74 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRDKTIIVWKLTSDD-IK-------------------YGV--PVRRLTGHSHFVSDVVLSSD 74 (315)
T ss_pred eEEEEEeecCCCceEEEcccceEEEEEEeccCc-cc-------------------cCc--eeeeeeccceEecceEEccC
Confidence 4666666654 37789999999999998721 10 033 344555 8999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEcc--CCCCeE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQN--HTQEVC 422 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~ 422 (609)
|++.++++.|+.+++||+.+++..+.|.+|...|.+++| +...+++|++|.+|.+|++-.. +..++.. |..-|.
T Consensus 75 g~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~--ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 75 GNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV--CKYTIHEDSHREWVS 152 (315)
T ss_pred CceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc--EEEEEecCCCcCcEE
Confidence 999999999999999999999999999999999999999 5689999999999999999865 3333333 378999
Q ss_pred EEEEccC--CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 423 GLKWSPD--GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 423 ~l~~spd--g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
|+.|+|+ ..+|++++.|++|++||+++. +....+.+|.+.++.++++||| .+.++|| .||.+.+||++.
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~------~l~~~~~gh~~~v~t~~vSpDG-slcasGg--kdg~~~LwdL~~ 223 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRNC------QLRTTFIGHSGYVNTVTVSPDG-SLCASGG--KDGEAMLWDLNE 223 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCCc------chhhccccccccEEEEEECCCC-CEEecCC--CCceEEEEEccC
Confidence 9999997 779999999999999999988 7788899999999999999999 5888875 999999999999
Q ss_pred CceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC----C-----CCCEEEEEEeCCCCEEEE
Q psy4876 501 GACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG----H-----SARVLNLAMSPDETTVLS 571 (609)
Q Consensus 501 ~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~----h-----~~~V~~l~~spdg~~L~s 571 (609)
++++.++++...|.+++|+|+...|+.+. +..|+|||+.+...+.++.. . .-...+++|++||..|++
T Consensus 224 ~k~lysl~a~~~v~sl~fspnrywL~~at---~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~ 300 (315)
T KOG0279|consen 224 GKNLYSLEAFDIVNSLCFSPNRYWLCAAT---ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFA 300 (315)
T ss_pred CceeEeccCCCeEeeEEecCCceeEeecc---CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEe
Confidence 99999999999999999999999888865 56699999999988877642 2 234678899999999999
Q ss_pred EECCCCEEEEEcC
Q psy4876 572 AGADETLRLWKIF 584 (609)
Q Consensus 572 ~s~Dg~I~iWdl~ 584 (609)
|-.|+.|++|.+.
T Consensus 301 g~td~~irv~qv~ 313 (315)
T KOG0279|consen 301 GYTDNVIRVWQVA 313 (315)
T ss_pred eecCCcEEEEEee
Confidence 9999999999875
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=300.24 Aligned_cols=248 Identities=20% Similarity=0.381 Sum_probs=232.3
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCCCe
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSRDH 409 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~~~ 409 (609)
...+|..+.|+.+++.||+|+.+|.++||...+...+.++.+|...|.++.|+ +..|++++.||++++|++.+. .
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-~ 252 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE-T 252 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC-c
Confidence 67899999999999999999999999999999999999999999999999995 358999999999999999985 6
Q ss_pred eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC
Q psy4876 410 KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA 489 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~ 489 (609)
.+..+.+|...|..++|+|+|++|++++.|.+-++||++++ ..+....+|...|.+++|++|| .++++|| .
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk------~ElL~QEGHs~~v~~iaf~~DG-SL~~tGG--l 323 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK------SELLLQEGHSKGVFSIAFQPDG-SLAATGG--L 323 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccc------hhhHhhcccccccceeEecCCC-ceeeccC--c
Confidence 89999999999999999999999999999999999999998 6777888999999999999999 5888875 8
Q ss_pred CCeEEEEECCCCceeEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeC-CCC
Q psy4876 490 DRHIYFWNVSSGACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP-DET 567 (609)
Q Consensus 490 Dg~I~iwd~~t~~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~ 567 (609)
|..-+|||+++|.++..+.+|. +|.++.|+|+|..+++ |+.|++++|||++....+..+.+|.+-|+.|.|+| .|.
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lAT--gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLAT--GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred cchhheeecccCcEEEEecccccceeeEeECCCceEEee--cCCCCcEEEeeecccccceecccccchhhheEecccCCe
Confidence 9999999999999999999875 8999999999999999 56899999999999999999999999999999999 788
Q ss_pred EEEEEECCCCEEEEEcCCCccchhhh
Q psy4876 568 TVLSAGADETLRLWKIFEKVKSKKKE 593 (609)
Q Consensus 568 ~L~s~s~Dg~I~iWdl~~~~~~~k~~ 593 (609)
+|+|++.|++++||.-.+..+.+...
T Consensus 402 fL~TasyD~t~kiWs~~~~~~~ksLa 427 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWSTRTWSPLKSLA 427 (459)
T ss_pred EEEEcccCcceeeecCCCcccchhhc
Confidence 99999999999999998888776544
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=310.72 Aligned_cols=377 Identities=18% Similarity=0.294 Sum_probs=296.3
Q ss_pred CCCCCCCCCCCCCccccCCCCCCccccccccccCCCC--CCCCccHHHHHHHHHhHhcCCCCCCceEEeecCCCCCCCCC
Q psy4876 92 TPSAKSKTPSGGDRYIPNRSAIDTELSHYLLTRDENM--EDLSPSEREKRKAMSELVHGKDIQKSRVLAFQNKAPPPPDG 169 (609)
Q Consensus 92 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (609)
-||||.++|+|.++||| |.|||++.+|.. |...|++|+ .++|++++..++ .|++|. ....|.
T Consensus 287 ~paPKl~lP~heESYNP--------P~EYL~~~eE~~~we~~E~~~R~-l~F~P~ky~sLR----~VPaY~---r~irEr 350 (733)
T KOG0650|consen 287 VPAPKLALPGHEESYNP--------PEEYLFDEEEKKAWEEAEPEDRK-LNFIPQKYKSLR----KVPAYE---RSIRER 350 (733)
T ss_pred CCccccCCCCcccccCC--------chhhccCHHHhhhhhhccccccc-cccccccchhhh----cchhHH---HHHHHH
Confidence 68999999999999999 999999998877 888888888 689999999988 899999 555899
Q ss_pred ccchhhhhhhccccCCccceeeeeeeecccchhhhhhhhhhHHhhhhhhheee------eccCCcchhhhhhccCCCCCC
Q psy4876 170 YQNSLKVALNSAITSSPEMKIWKISVHQNVKSVKLCQNLFMERIFKSLEYLLF------KIKPLPHLMAIKILSNTSKTP 243 (609)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~e~~~~~~~~~~~------~~~p~p~~~~~~~~~~~~~~~ 243 (609)
|.+||+ || ||++..+.++......+++ .+.|||..+.+.+..+
T Consensus 351 FeRcLD-LY-------------------------L~PR~rK~rlniDpe~LiPkLPsp~dLrPFPt~~~lvyrGH----- 399 (733)
T KOG0650|consen 351 FERCLD-LY-------------------------LAPRVRKMRLNIDPESLIPKLPSPKDLRPFPTRCALVYRGH----- 399 (733)
T ss_pred HHHhHH-hh-------------------------hCcccccceecCCHHHhcccCCChhhcCCCcceeeeeEecc-----
Confidence 999999 99 7777777777777666665 2344444433332222
Q ss_pred CCCCCCccccCCCccccccCCccCCceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccc
Q psy4876 244 MGSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQ 321 (609)
Q Consensus 244 ~~~~~~~r~i~~~p~~il~ap~~~~~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (609)
.-.|.+|...|.| +++|+.||+|+||.+.+
T Consensus 400 -------------------------tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T----------------------- 431 (733)
T KOG0650|consen 400 -------------------------TGLVRSISVDPSGEWLASGSDDGTVRIWEIAT----------------------- 431 (733)
T ss_pred -------------------------CCeEEEEEecCCcceeeecCCCCcEEEEEeec-----------------------
Confidence 2347888888876 66688899999999999
Q ss_pred cccceeeeeeecCCCCeEEEEEccCC--CEEEEEeCCCeEEEEeCCCC--------------------------------
Q psy4876 322 DNRAIDHLMDLEGNENVCSVAWIQEG--YMLGVGTSLGTVQLWDVSAK-------------------------------- 367 (609)
Q Consensus 322 ~~~~~~~l~~~~h~~~V~~v~~spdg--~~Lasgs~dg~I~iwd~~~~-------------------------------- 367 (609)
+.+..... .++.|.||+|+|.+ ..||++..+. +.|.+..-|
T Consensus 432 --gRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~ 506 (733)
T KOG0650|consen 432 --GRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRAS 506 (733)
T ss_pred --ceEEEEEe--ecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhh
Confidence 66544444 46799999999987 4555554433 433332111
Q ss_pred -----eeEEEecCCCCceEEEEec--CCEEEEEecC---CeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEe
Q psy4876 368 -----KKCRTMDGHDVRVGALAWN--TYILSSGSRC---GNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGG 437 (609)
Q Consensus 368 -----~~~~~l~~h~~~V~~l~~~--~~~L~sgs~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs 437 (609)
.-++..-.|...|..+.|+ |.+|++...+ ..|.|+++.... ....+....+.|.++.|+|...+|++++
T Consensus 507 ~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~-sQ~PF~kskG~vq~v~FHPs~p~lfVaT 585 (733)
T KOG0650|consen 507 LDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK-SQSPFRKSKGLVQRVKFHPSKPYLFVAT 585 (733)
T ss_pred hhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc-ccCchhhcCCceeEEEecCCCceEEEEe
Confidence 0123334578899999995 8999988764 469999998763 4455666678899999999999999988
Q ss_pred CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC-CceeEEEcCCC-CeEE
Q psy4876 438 NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS-GACLDSIDTKS-QVCA 515 (609)
Q Consensus 438 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t-~~~~~~~~~~~-~v~s 515 (609)
. ..|+|||+..+ ..+..+......|..++.+|.|.++++. +.|+.+.+||+.- .++.+.+..|. .+++
T Consensus 586 q-~~vRiYdL~kq------elvKkL~tg~kwiS~msihp~GDnli~g---s~d~k~~WfDldlsskPyk~lr~H~~avr~ 655 (733)
T KOG0650|consen 586 Q-RSVRIYDLSKQ------ELVKKLLTGSKWISSMSIHPNGDNLILG---SYDKKMCWFDLDLSSKPYKTLRLHEKAVRS 655 (733)
T ss_pred c-cceEEEehhHH------HHHHHHhcCCeeeeeeeecCCCCeEEEe---cCCCeeEEEEcccCcchhHHhhhhhhhhhh
Confidence 7 78999999887 6777777788899999999999998885 5899999999984 45667777664 8999
Q ss_pred EEEcCCCCeEEEEEecCCCeEEEEECC---------CCceEEEEeCCCCC----EEEEEEeCCCCEEEEEECCCCEEEE
Q psy4876 516 LLWNSDYKELVSAHGFAQNQLIIWKYP---------SLVKVAELHGHSAR----VLNLAMSPDETTVLSAGADETLRLW 581 (609)
Q Consensus 516 l~~s~~g~~l~~~sG~~dg~I~Iwd~~---------~~~~~~~l~~h~~~----V~~l~~spdg~~L~s~s~Dg~I~iW 581 (609)
++|++...++++ |+.||++.||.-. -..++..+.+|... |+++.|||...+|+++++||+|++|
T Consensus 656 Va~H~ryPLfas--~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 656 VAFHKRYPLFAS--GSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhhccccceeee--ecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 999999999988 5589999999632 23567888899765 9999999999999999999999998
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=288.71 Aligned_cols=336 Identities=23% Similarity=0.337 Sum_probs=279.3
Q ss_pred hhhhHHhhhhhhheeeeccCCcchhhhhhccCCCCCCCCCC-CCccccCCCccccccCCccCCceeEEEEEecCCC--eE
Q psy4876 207 NLFMERIFKSLEYLLFKIKPLPHLMAIKILSNTSKTPMGSK-PTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFN--VL 283 (609)
Q Consensus 207 ~~~~e~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~-~~~r~i~~~p~~il~ap~~~~~~~v~~l~wsp~~--ll 283 (609)
..++++.|.+..++...+..++..++-.--+-....|.... ....++|.+|.+--.+- ....|..+-++|+- ++
T Consensus 48 g~ll~kkwtSv~rlqKki~~Les~l~~~~~el~~g~pt~~~~~~~~wipRp~l~~~l~g---~r~~vt~v~~hp~~~~v~ 124 (406)
T KOG0295|consen 48 GGLLEKKWTSVDRLQKKIRELESKLDETGDELIAGDPTGSKRTPALWIPRPNLVQKLAG---HRSSVTRVIFHPSEALVV 124 (406)
T ss_pred cceeeccccccchhHHHHHHHHhhhcccccccccCCCCcCccChhhcCCCCCchhhhhc---cccceeeeeeccCceEEE
Confidence 45677788877777776655544432221111112232222 22345666554443322 35668889999996 33
Q ss_pred EEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q psy4876 284 AVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLW 362 (609)
Q Consensus 284 a~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iw 362 (609)
+++.|++|++||..+ +++ ...+. |.+.|.+|+|+..|++||+++.|=.+.+|
T Consensus 125 ~as~d~tikv~D~~t-------------------------g~~--e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 125 SASEDATIKVFDTET-------------------------GEL--ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred EecCCceEEEEEccc-------------------------hhh--hhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence 355799999999998 666 44555 88899999999999999999999999999
Q ss_pred eCCC-CeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCC
Q psy4876 363 DVSA-KKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGND 439 (609)
Q Consensus 363 d~~~-~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~D 439 (609)
|.++ .++++.+.+|...|.++.| .+++++++++|.+|+.|++.++ .++.++.+|..-|.-+..+.||.++|+++.|
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-~cv~t~~~h~ewvr~v~v~~DGti~As~s~d 256 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-YCVKTFPGHSEWVRMVRVNQDGTIIASCSND 256 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc-eeEEeccCchHhEEEEEecCCeeEEEecCCC
Confidence 9987 5788899999999999999 6899999999999999999998 5899999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCC--------------CCcEEEEEeccCCCeEEEEECCCCceeE
Q psy4876 440 NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW--------------SPNVLASGGGTADRHIYFWNVSSGACLD 505 (609)
Q Consensus 440 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--------------~~~llasggGs~Dg~I~iwd~~t~~~~~ 505 (609)
.+|++|-+.++ ++...+.+|+.+|.+++|.|. +..++.++ +.|++|++||+.+|.|+.
T Consensus 257 qtl~vW~~~t~------~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~--SrDktIk~wdv~tg~cL~ 328 (406)
T KOG0295|consen 257 QTLRVWVVATK------QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG--SRDKTIKIWDVSTGMCLF 328 (406)
T ss_pred ceEEEEEeccc------hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEee--cccceEEEEeccCCeEEE
Confidence 99999999988 778889999999999999874 22466665 699999999999999999
Q ss_pred EEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEc
Q psy4876 506 SIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKI 583 (609)
Q Consensus 506 ~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl 583 (609)
++.++. .|+.++|+|.|+||+++. +|++|++||+.+.+++..+..|..-|+++.|+.+-.+++||+-|.++++|.+
T Consensus 329 tL~ghdnwVr~~af~p~Gkyi~Sca--DDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 329 TLVGHDNWVRGVAFSPGGKYILSCA--DDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEecccceeeeeEEcCCCeEEEEEe--cCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 998764 899999999999999976 8999999999999999999999999999999999999999999999999986
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=264.35 Aligned_cols=269 Identities=19% Similarity=0.334 Sum_probs=227.5
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQ 360 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~ 360 (609)
+++++.|.+|++|.+.+ |.+ ..++. .+..|..+...|+++.||+++. ..|+
T Consensus 13 LvsA~YDhTIRfWqa~t-------------------------G~C--~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvR 64 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALT-------------------------GIC--SRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVR 64 (311)
T ss_pred EEeccCcceeeeeehhc-------------------------CeE--EEEEecCccceeeEEEcCCcchhhhccC-CeeE
Confidence 56689999999999988 654 44555 5788999999999999998877 6799
Q ss_pred EEeCCCCe--eEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEE
Q psy4876 361 LWDVSAKK--KCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASG 436 (609)
Q Consensus 361 iwd~~~~~--~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg 436 (609)
+||+.+++ .+.++.+|...|.++.| +|+.+++|++||+++|||++.. .......|..+|+++..+|+...|++|
T Consensus 65 lyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~--~~qR~~~~~spVn~vvlhpnQteLis~ 142 (311)
T KOG0315|consen 65 LYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL--SCQRNYQHNSPVNTVVLHPNQTELISG 142 (311)
T ss_pred EEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc--ccchhccCCCCcceEEecCCcceEEee
Confidence 99998764 68999999999999999 7999999999999999999984 455555688999999999999999999
Q ss_pred eCCCcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce------eEEEcC
Q psy4876 437 GNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC------LDSIDT 509 (609)
Q Consensus 437 s~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~------~~~~~~ 509 (609)
.++|.|++||+... .+.+.+ ......|.++...|+|..+.+. ...|..++|++-+... +..+..
T Consensus 143 dqsg~irvWDl~~~------~c~~~liPe~~~~i~sl~v~~dgsml~a~---nnkG~cyvW~l~~~~~~s~l~P~~k~~a 213 (311)
T KOG0315|consen 143 DQSGNIRVWDLGEN------SCTHELIPEDDTSIQSLTVMPDGSMLAAA---NNKGNCYVWRLLNHQTASELEPVHKFQA 213 (311)
T ss_pred cCCCcEEEEEccCC------ccccccCCCCCcceeeEEEcCCCcEEEEe---cCCccEEEEEccCCCccccceEhhheec
Confidence 99999999999876 233332 2334689999999999765554 3789999999986543 333443
Q ss_pred C-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC-ceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 510 K-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL-VKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 510 ~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
+ +.+..+.+||++++|++++ .|.+++||+..+. +.-..+.+|+..+++++||.||.+|+||+.|+.+++|++..++
T Consensus 214 h~~~il~C~lSPd~k~lat~s--sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 214 HNGHILRCLLSPDVKYLATCS--SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred ccceEEEEEECCCCcEEEeec--CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 3 5799999999999999975 7999999999988 5556778999999999999999999999999999999999887
Q ss_pred cchh
Q psy4876 588 KSKK 591 (609)
Q Consensus 588 ~~~k 591 (609)
..+.
T Consensus 292 ~v~q 295 (311)
T KOG0315|consen 292 EVRQ 295 (311)
T ss_pred eeee
Confidence 5543
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=283.53 Aligned_cols=276 Identities=23% Similarity=0.419 Sum_probs=248.8
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
.-.|++|+|+.+| ++++..||.++||+... . .+.++. |.++|.++.|+.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-------------------------~---l~~tl~~HkgPI~slKWnk 286 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-------------------------N---LISTLGQHKGPIFSLKWNK 286 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCc-------------------------h---hhhhhhccCCceEEEEEcC
Confidence 4568999999987 56688899999999765 2 344555 999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGL 424 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 424 (609)
+|+||++++.||++.|||..++...+.+.-|..+-..+.| +...+++.+.||.|+|+.+... .++.++.+|..+|.+|
T Consensus 287 ~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~-~P~~t~~GH~g~V~al 365 (524)
T KOG0273|consen 287 KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGED-RPVKTFIGHHGEVNAL 365 (524)
T ss_pred CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCC-CcceeeecccCceEEE
Confidence 9999999999999999999999999999999999888999 7889999999999999999876 5889999999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCC--------cEEEEEeccCCCeEEEE
Q psy4876 425 KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSP--------NVLASGGGTADRHIYFW 496 (609)
Q Consensus 425 ~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~--------~llasggGs~Dg~I~iw 496 (609)
.|+|.|.+|++++.|++++||..... ...+.+..|...|..+.|+|.|+ ..++++ +.|++|++|
T Consensus 366 k~n~tg~LLaS~SdD~TlkiWs~~~~------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sa--s~dstV~lw 437 (524)
T KOG0273|consen 366 KWNPTGSLLASCSDDGTLKIWSMGQS------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASA--SFDSTVKLW 437 (524)
T ss_pred EECCCCceEEEecCCCeeEeeecCCC------cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEe--ecCCeEEEE
Confidence 99999999999999999999998877 67888999999999999998764 355665 389999999
Q ss_pred ECCCCceeEEE-cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECC
Q psy4876 497 NVSSGACLDSI-DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGAD 575 (609)
Q Consensus 497 d~~t~~~~~~~-~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D 575 (609)
|+..+.++.++ .+..+|.+++|+|+|+++++ |..||.|+||+.++++.++.+.+ .+.|..++|+.+|..|..+-.|
T Consensus 438 dv~~gv~i~~f~kH~~pVysvafS~~g~ylAs--Gs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 438 DVESGVPIHTLMKHQEPVYSVAFSPNGRYLAS--GSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred EccCCceeEeeccCCCceEEEEecCCCcEEEe--cCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecC
Confidence 99999999999 45579999999999999999 77999999999999999999875 4569999999999999999999
Q ss_pred CCEEEEEcC
Q psy4876 576 ETLRLWKIF 584 (609)
Q Consensus 576 g~I~iWdl~ 584 (609)
+.+++-|+.
T Consensus 515 ~~vcvldlr 523 (524)
T KOG0273|consen 515 GSVCVLDLR 523 (524)
T ss_pred CCceEEEec
Confidence 999999874
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=288.38 Aligned_cols=290 Identities=21% Similarity=0.415 Sum_probs=247.9
Q ss_pred cccCCccCCceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCC
Q psy4876 260 ILDAPEIQNDYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNEN 337 (609)
Q Consensus 260 il~ap~~~~~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~ 337 (609)
...+..-.....|+.|.|.|+| +++++..|.+.+|+..+ -..+.+.. .|+..
T Consensus 87 f~h~s~NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-------------------------fnFEtilQ-aHDs~ 140 (464)
T KOG0284|consen 87 FVHTSSNKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-------------------------FNFETILQ-AHDSP 140 (464)
T ss_pred eEeccccccccceeeEEEcCCCceeEeecccccEEEecCce-------------------------eeHHHHhh-hhccc
Confidence 3333334445679999999995 99999999999999865 23332222 29999
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecC-CCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEE
Q psy4876 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDG-HDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALL 414 (609)
Q Consensus 338 V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~ 414 (609)
|.++.|+++|.++++|..+|.|++|+..- ..+..+.. |...|.+++| +...|++++.||+|+|||.... .....+
T Consensus 141 Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-kee~vL 218 (464)
T KOG0284|consen 141 VRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-KEERVL 218 (464)
T ss_pred ceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC-chhhee
Confidence 99999999999999999999999999865 44455555 4599999999 4689999999999999999876 456677
Q ss_pred ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEE
Q psy4876 415 QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIY 494 (609)
Q Consensus 415 ~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~ 494 (609)
.+|.-.|.+++|+|...+||+|+.|+.|++||.+++ .++.++.+|...|.++.|.|++ ++|+++ +.|..++
T Consensus 219 ~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg------~cl~tlh~HKntVl~~~f~~n~-N~Llt~--skD~~~k 289 (464)
T KOG0284|consen 219 RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG------SCLATLHGHKNTVLAVKFNPNG-NWLLTG--SKDQSCK 289 (464)
T ss_pred ccCCCCcceeccCCccceeEEccCCceeEeecCCCc------chhhhhhhccceEEEEEEcCCC-CeeEEc--cCCceEE
Confidence 999999999999999999999999999999999999 8999999999999999999999 677776 4999999
Q ss_pred EEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEE-eCCCCCEEEEEEeCCCCEEEEE
Q psy4876 495 FWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL-HGHSARVLNLAMSPDETTVLSA 572 (609)
Q Consensus 495 iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~L~s~ 572 (609)
++|+++.+.+..+..| ..+.++.|+|-..-|++. |+.||.|..|.+...+++..+ .+|...|++++|+|-|.+|++|
T Consensus 290 v~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lfts-gg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tg 368 (464)
T KOG0284|consen 290 VFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTS-GGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATG 368 (464)
T ss_pred EEehhHhHHHHHhhcchhhheeeccccccccceee-ccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeec
Confidence 9999988888888855 589999999999888877 458999999999866666655 5799999999999999999999
Q ss_pred ECCCCEEEEEcCCCc
Q psy4876 573 GADETLRLWKIFEKV 587 (609)
Q Consensus 573 s~Dg~I~iWdl~~~~ 587 (609)
+.|.++++|.-....
T Consensus 369 snd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 369 SNDRTVRFWTRNRPG 383 (464)
T ss_pred CCCcceeeeccCCCC
Confidence 999999999765443
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=260.78 Aligned_cols=275 Identities=20% Similarity=0.348 Sum_probs=242.6
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
.-.|+.+.|+|+| ++++|.|..|.+|++.. .++....+. |.+.|..+.|.+
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g--------------------------dceN~~~lkgHsgAVM~l~~~~ 100 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG--------------------------DCENFWVLKGHSGAVMELHGMR 100 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEeccc--------------------------cccceeeeccccceeEeeeecc
Confidence 3458899999998 77799999999999764 455556666 999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe---cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
|++.|++++.|.+|+.||+++|+.++.+++|..-|.++.. +..++.+|+.||++++||+++.+ .++++. ..-+++
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~~-~kyqlt 178 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTFE-NKYQLT 178 (338)
T ss_pred CCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhhccc-cceeEE
Confidence 9999999999999999999999999999999999999887 46789999999999999999863 555543 456799
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC--
Q psy4876 423 GLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS-- 500 (609)
Q Consensus 423 ~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t-- 500 (609)
++.|..++..+.+|+-|+.|++||++.. ...+.+.+|...|+.+..+++|..++.- +.|.++++||++-
T Consensus 179 Av~f~d~s~qv~sggIdn~ikvWd~r~~------d~~~~lsGh~DtIt~lsls~~gs~llsn---sMd~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 179 AVGFKDTSDQVISGGIDNDIKVWDLRKN------DGLYTLSGHADTITGLSLSRYGSFLLSN---SMDNTVRVWDVRPFA 249 (338)
T ss_pred EEEecccccceeeccccCceeeeccccC------cceEEeecccCceeeEEeccCCCccccc---cccceEEEEEecccC
Confidence 9999999999999999999999999988 7889999999999999999999877664 4899999999983
Q ss_pred --CceeEEEcCCC-----CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEE
Q psy4876 501 --GACLDSIDTKS-----QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAG 573 (609)
Q Consensus 501 --~~~~~~~~~~~-----~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s 573 (609)
..++..+..+. ....++|+|++..+-+ |+.|..+++||......+..+.||.+.|.+++|+|...+|.+++
T Consensus 250 p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~a--gs~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~ 327 (338)
T KOG0265|consen 250 PSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITA--GSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCS 327 (338)
T ss_pred CCCceEEEeecchhhhhhhcceeeccCCCCcccc--ccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEec
Confidence 34566665442 5678899999999988 66899999999999999999999999999999999999999999
Q ss_pred CCCCEEEEE
Q psy4876 574 ADETLRLWK 582 (609)
Q Consensus 574 ~Dg~I~iWd 582 (609)
.|.+|.+=.
T Consensus 328 sdk~i~lge 336 (338)
T KOG0265|consen 328 SDKTIYLGE 336 (338)
T ss_pred cCceeEeec
Confidence 999998744
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=265.65 Aligned_cols=274 Identities=30% Similarity=0.497 Sum_probs=238.0
Q ss_pred eeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
..|.+++|+|++ +++++.+|.|++|++.+ +.. ...+. |...+..+.|+++
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~-------------------------~~~--~~~~~~~~~~i~~~~~~~~ 62 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLET-------------------------GEL--LRTLKGHTGPVRDVAASAD 62 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeC-------------------------CCc--EEEEecCCcceeEEEECCC
Confidence 458999999984 55566799999999987 432 22333 7788999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGL 424 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 424 (609)
+++|++++.+|.|.+||+.+++.+..+..|...+.++.|+ +.++++++.+|.|.+||+++. .....+..|...|.++
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-KCLTTLRGHTDWVNSV 141 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc-EEEEEeccCCCcEEEE
Confidence 9999999999999999999988888999999999999995 478888888999999999975 4677777899999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee
Q psy4876 425 KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504 (609)
Q Consensus 425 ~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~ 504 (609)
+|+|++.++++++.|+.|++||++.+ +.+..+..|...|.+++|+|++..+++++ .|+.|++||+.+++.+
T Consensus 142 ~~~~~~~~l~~~~~~~~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~ 212 (289)
T cd00200 142 AFSPDGTFVASSSQDGTIKLWDLRTG------KCVATLTGHTGEVNSVAFSPDGEKLLSSS---SDGTIKLWDLSTGKCL 212 (289)
T ss_pred EEcCcCCEEEEEcCCCcEEEEEcccc------ccceeEecCccccceEEECCCcCEEEEec---CCCcEEEEECCCCcee
Confidence 99999999999888999999999877 66777778888999999999986555543 5999999999999988
Q ss_pred EEEc-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEE
Q psy4876 505 DSID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWK 582 (609)
Q Consensus 505 ~~~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWd 582 (609)
..+. +...+.++.|++++.++++ +..++.|++|++.++..+..+..|...|.+++|++++.+|++++.|+.|++|+
T Consensus 213 ~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 213 GTLRGHENGVNSVAFSPDGYLLAS--GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cchhhcCCceEEEEEcCCCcEEEE--EcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 8884 4558999999999777776 43699999999999999999999999999999999999999999999999996
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=273.26 Aligned_cols=309 Identities=21% Similarity=0.405 Sum_probs=249.2
Q ss_pred ccCCCccccccCCccCCceeEEEEEecCC--CeEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceee
Q psy4876 252 YIPLTADRILDAPEIQNDYYLNLIDWSHF--NVLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDH 328 (609)
Q Consensus 252 ~i~~~p~~il~ap~~~~~~~v~~l~wsp~--~lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (609)
.||..-.+++. ....|.+.+|+|- +++| ++.|-..++|++...... ...+.++..|... .
T Consensus 166 ~I~~~~~kvl~-----~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~-------~~~q~~lrh~~~~-----~ 228 (524)
T KOG0273|consen 166 EIPSSKAKVLR-----HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNI-------GSTQLVLRHCIRE-----G 228 (524)
T ss_pred cccccceeecc-----CCCceEEEecCchhhhhhhccCCccceeeeeehhhccc-------cchhhhhhhhhhh-----h
Confidence 34444444443 2345888999994 4565 666789999998741000 0000001111111 0
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCC
Q psy4876 329 LMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRS 406 (609)
Q Consensus 329 l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~ 406 (609)
.........|++++|+.+|.+||+|+.||.++||+.. |.++.++..|.++|.++.|+ |++|++++.||++.+||..+
T Consensus 229 ~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~ 307 (524)
T KOG0273|consen 229 GKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT 307 (524)
T ss_pred cccCCccCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC
Confidence 1122245789999999999999999999999999964 68889999999999999995 78999999999999999988
Q ss_pred CCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 407 RDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 407 ~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
+ ...+.+.-|..+-..+.|-.+ ..|++++.|+.|+|+.+... .|+.++.+|.+.|.+|.|+|.+ .||+++
T Consensus 308 g-~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~------~P~~t~~GH~g~V~alk~n~tg-~LLaS~- 377 (524)
T KOG0273|consen 308 G-TVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGED------RPVKTFIGHHGEVNALKWNPTG-SLLASC- 377 (524)
T ss_pred c-eEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCC------CcceeeecccCceEEEEECCCC-ceEEEe-
Confidence 7 467777888888778889754 46999999999999999876 8999999999999999999988 577777
Q ss_pred ccCCCeEEEEECCCCceeEEEcCCC-CeEEEEEcCCCC---------eEEEEEecCCCeEEEEECCCCceEEEEeCCCCC
Q psy4876 487 GTADRHIYFWNVSSGACLDSIDTKS-QVCALLWNSDYK---------ELVSAHGFAQNQLIIWKYPSLVKVAELHGHSAR 556 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t~~~~~~~~~~~-~v~sl~~s~~g~---------~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~ 556 (609)
+.|++++||++....+...+..|+ .|..+.|+|.|. .++++ ..|++|++||+..+.++..|..|+.+
T Consensus 378 -SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sa--s~dstV~lwdv~~gv~i~~f~kH~~p 454 (524)
T KOG0273|consen 378 -SDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASA--SFDSTVKLWDVESGVPIHTLMKHQEP 454 (524)
T ss_pred -cCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEe--ecCCeEEEEEccCCceeEeeccCCCc
Confidence 599999999999999998888776 899999999763 34554 37999999999999999999999999
Q ss_pred EEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 557 VLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 557 V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
|.+++|+|+|++|++|+.||.|.+|++..++..+.
T Consensus 455 VysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s 489 (524)
T KOG0273|consen 455 VYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS 489 (524)
T ss_pred eEEEEecCCCcEEEecCCCCeeEeccccchheeEe
Confidence 99999999999999999999999999988775543
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=291.99 Aligned_cols=250 Identities=24% Similarity=0.458 Sum_probs=226.4
Q ss_pred eeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC-------------------------------eeEEEecC
Q psy4876 328 HLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAK-------------------------------KKCRTMDG 375 (609)
Q Consensus 328 ~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~-------------------------------~~~~~l~~ 375 (609)
++.++. ....++|..|++|+.+||.|..|..|++|.+... ...+++.+
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 444554 5678999999999999999999999999988631 12345779
Q ss_pred CCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q psy4876 376 HDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHT 453 (609)
Q Consensus 376 h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~ 453 (609)
|.++|....|. .++|++++.|+++++|.+++. ..+..+.+|..+|+.+.|+|.|-|||+++.|++-++|.....
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~-s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~--- 525 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW-SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN--- 525 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccc-eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC---
Confidence 99999999994 689999999999999999997 577788899999999999999999999999999999999876
Q ss_pred CCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecC
Q psy4876 454 FSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFA 532 (609)
Q Consensus 454 ~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~ 532 (609)
.+++.+.+|.+.|.|+.|+|+. .++++| +.|.++++||+.+|..++.|.+| ++|.+++|+|+|++|++ |..
T Consensus 526 ---~PlRifaghlsDV~cv~FHPNs-~Y~aTG--SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS--g~e 597 (707)
T KOG0263|consen 526 ---KPLRIFAGHLSDVDCVSFHPNS-NYVATG--SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS--GDE 597 (707)
T ss_pred ---CchhhhcccccccceEEECCcc-cccccC--CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee--ccc
Confidence 8999999999999999999987 677776 59999999999999999999876 59999999999999999 669
Q ss_pred CCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 533 QNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 533 dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
||.|.|||+.++..+..+.+|++.|.++.|+.||..||+||.|++|++||+......
T Consensus 598 d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 999999999999999999999999999999999999999999999999999875544
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=280.16 Aligned_cols=290 Identities=22% Similarity=0.417 Sum_probs=246.8
Q ss_pred ceeEEEEEecCCC-eEEEEcC--CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSHFN-VLAVALG--GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~d--g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~s 344 (609)
+..|..++|+..| .+|.+.. |.+-||++.+ .. .+.... |-..+++++++
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs-------------------------Es--YVlKQQgH~~~i~~l~YS 359 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS-------------------------ES--YVLKQQGHSDRITSLAYS 359 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEeec-------------------------cc--eeeeccccccceeeEEEC
Confidence 4457788888765 7886665 5999999987 33 233333 88999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccC-CCCe
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNH-TQEV 421 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h-~~~V 421 (609)
|||+++|+|+.||.|+|||..++-+..++..|...|+.+.| .++.+++.+-||+|+.||+... ...+++... ....
T Consensus 360 pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTft~P~p~Qf 438 (893)
T KOG0291|consen 360 PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTFTSPEPIQF 438 (893)
T ss_pred CCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeeecCCCceee
Confidence 99999999999999999999999999999999999999999 6999999999999999999875 355555533 3457
Q ss_pred EEEEEccCCCEEEEEeCCC-cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 422 CGLKWSPDGRYLASGGNDN-LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 422 ~~l~~spdg~~lasgs~Dg-~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
.|++..|.|.+++.|+.|. .|++|++.+| +.+..+.+|.++|.+++|+|.+. +|++| +.|++|++||+-.
T Consensus 439 scvavD~sGelV~AG~~d~F~IfvWS~qTG------qllDiLsGHEgPVs~l~f~~~~~-~LaS~--SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 439 SCVAVDPSGELVCAGAQDSFEIFVWSVQTG------QLLDILSGHEGPVSGLSFSPDGS-LLASG--SWDKTVRIWDIFS 509 (893)
T ss_pred eEEEEcCCCCEEEeeccceEEEEEEEeecC------eeeehhcCCCCcceeeEEccccC-eEEec--cccceEEEEEeec
Confidence 7899999999999999886 5999999999 89999999999999999999985 88886 6999999999864
Q ss_pred -CceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC--------------------CCCCEEE
Q psy4876 501 -GACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG--------------------HSARVLN 559 (609)
Q Consensus 501 -~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~--------------------h~~~V~~ 559 (609)
...+.++...+.+..+.|.|+|+.+++++ -||+|.+||...+..+..+.+ ....++.
T Consensus 510 s~~~vEtl~i~sdvl~vsfrPdG~elaVaT--ldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftt 587 (893)
T KOG0291|consen 510 SSGTVETLEIRSDVLAVSFRPDGKELAVAT--LDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTT 587 (893)
T ss_pred cCceeeeEeeccceeEEEEcCCCCeEEEEE--ecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEE
Confidence 35677888889999999999999999976 799999999987666544332 1246899
Q ss_pred EEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhhhcc
Q psy4876 560 LAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEIKNN 597 (609)
Q Consensus 560 l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~~~~ 597 (609)
+++++||..|++||..+.|+||++.++...++-++..+
T Consensus 588 i~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N 625 (893)
T KOG0291|consen 588 ICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDN 625 (893)
T ss_pred EEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccc
Confidence 99999999999999999999999999988887766544
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=287.15 Aligned_cols=281 Identities=27% Similarity=0.450 Sum_probs=242.6
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|.++.|++++ +++++.++.+++|+... .....+.++. |...|.+++|+|
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~-------------------------~~~~~~~~l~~h~~~v~~~~fs~ 213 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEG-------------------------IKSNLLRELSGHTRGVSDVAFSP 213 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeeccc-------------------------ccchhhccccccccceeeeEECC
Confidence 3457889999997 66677899999999966 3312333444 999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeC-CCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 346 EGYMLGVGTSLGTVQLWDV-SAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~-~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
+|.++++|+.|++|+|||+ ..+..++++.+|...|++++|+ ++++++|+.|++|++||++++ .....+.+|.+.|.
T Consensus 214 d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 214 DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-ECVRKLKGHSDGIS 292 (456)
T ss_pred CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-eEEEeeeccCCceE
Confidence 9999999999999999999 5568999999999999999994 689999999999999999996 68999999999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCccc--EEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 423 GLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAA--VKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 423 ~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~--V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
+++|+++|.+|++++.|+.|+|||+.++... ++..+..+... +++++|+|++.++++.. .|+.+++||+..
T Consensus 293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~---~d~~~~~w~l~~ 365 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKL----CLKLLSGAENSAPVTSVQFSPNGKYLLSAS---LDRTLKLWDLRS 365 (456)
T ss_pred EEEECCCCCEEEEcCCCccEEEEECCCCcee----eeecccCCCCCCceeEEEECCCCcEEEEec---CCCeEEEEEccC
Confidence 9999999999999999999999999998210 45666666555 99999999997666653 799999999999
Q ss_pred CceeEEEcCCC----CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC-CCCEEEEEEeCCCCEEEEEE--
Q psy4876 501 GACLDSIDTKS----QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH-SARVLNLAMSPDETTVLSAG-- 573 (609)
Q Consensus 501 ~~~~~~~~~~~----~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~L~s~s-- 573 (609)
+.++..+..+. .+.+...++.+.++++ |+.|+.|++|+..++..+..+.+| ...|..+.++|...++++++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s--g~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~ 443 (456)
T KOG0266|consen 366 GKSVGTYTGHSNLVRCIFSPTLSTGGKLIYS--GSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFE 443 (456)
T ss_pred CcceeeecccCCcceeEecccccCCCCeEEE--EeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcC
Confidence 99988887653 2344455788899988 669999999999999999999999 89999999999999999998
Q ss_pred CCCCEEEEEcC
Q psy4876 574 ADETLRLWKIF 584 (609)
Q Consensus 574 ~Dg~I~iWdl~ 584 (609)
.|+.|++|...
T Consensus 444 ~d~~~~~w~~~ 454 (456)
T KOG0266|consen 444 GDGLIRLWKYD 454 (456)
T ss_pred CCceEEEecCC
Confidence 79999999864
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-31 Score=257.53 Aligned_cols=275 Identities=20% Similarity=0.358 Sum_probs=234.2
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
.|.+++.+|++ ++++|.|..-+||++.+ +. .+.++. |.+.|+++.|+.+|
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~-------------------------ge--~~~eltgHKDSVt~~~Fshdg 118 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDIST-------------------------GE--FAGELTGHKDSVTCCSFSHDG 118 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccC-------------------------Cc--ceeEecCCCCceEEEEEccCc
Confidence 47789999975 44588899999999988 55 555666 99999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
.+||+|..+|.|+||+..++.....+...-..+.-+.|+ +++|++|+.||.+.+|.+... ...+.+.+|..++++-.
T Consensus 119 tlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~ 197 (399)
T KOG0296|consen 119 TLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGE 197 (399)
T ss_pred eEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCccccc
Confidence 999999999999999999999888887666777778886 589999999999999999986 57889999999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec------------------------------------------
Q psy4876 426 WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS------------------------------------------ 463 (609)
Q Consensus 426 ~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~------------------------------------------ 463 (609)
|.|+|+.++++..||+|++||+.+++ +++.+.
T Consensus 198 f~pdGKr~~tgy~dgti~~Wn~ktg~------p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 198 FIPDGKRILTGYDDGTIIVWNPKTGQ------PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred ccCCCceEEEEecCceEEEEecCCCc------eeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence 99999999999999999999999883 333332
Q ss_pred ---------CCcccEEEEEEcCCCCc--EEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecC
Q psy4876 464 ---------RHQAAVKAIAWCPWSPN--VLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFA 532 (609)
Q Consensus 464 ---------~h~~~V~~l~~sp~~~~--llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~ 532 (609)
.+...+.++.+.|.... |.|+ |+.||+|.|||+...+..+.+.+...|..+.|-+ ..+|++++ .
T Consensus 272 n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~--G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c--~ 346 (399)
T KOG0296|consen 272 NGTVPELKPSQEELDESVESIPSSSKLPLAAC--GSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTAC--A 346 (399)
T ss_pred CCCCccccccchhhhhhhhhcccccccchhhc--ccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeec--c
Confidence 11222233333333322 3344 4699999999999999999999999999999999 78888855 7
Q ss_pred CCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 533 QNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 533 dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
+|.|++||.++|..+.++.||...|.+++++|++++|+|+|.|++.+||++.
T Consensus 347 ~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 347 NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999999999999999999999999999875
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=244.73 Aligned_cols=277 Identities=21% Similarity=0.350 Sum_probs=226.9
Q ss_pred eEEEEEecCC-C--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec--CCCCeEEEEEcc
Q psy4876 271 YLNLIDWSHF-N--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE--GNENVCSVAWIQ 345 (609)
Q Consensus 271 ~v~~l~wsp~-~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--h~~~V~~v~~sp 345 (609)
.+..++|+|. | +.+++.|+.|+||+...+ ....+...+. |...|.+++|+|
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~------------------------~s~~ck~vld~~hkrsVRsvAwsp 71 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSG------------------------DSWTCKTVLDDGHKRSVRSVAWSP 71 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCC------------------------CcEEEEEeccccchheeeeeeecC
Confidence 4778999998 4 445888999999998741 3344444444 999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC--eeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCC--eeEEEEccCCC
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAK--KKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRD--HKVALLQNHTQ 419 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~--~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~ 419 (609)
.|++||+|+.|.++.||.-..+ +++.++.||...|.+++| +|++|+++++|..|-||.+...+ .....++.|++
T Consensus 72 ~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq 151 (312)
T KOG0645|consen 72 HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ 151 (312)
T ss_pred CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc
Confidence 9999999999999999987654 788999999999999999 68999999999999999998543 46788999999
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS 499 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~ 499 (609)
.|..+.|+|...+|++++.|++|++|+-..+ ....++.++.+|...|.+++|++.|. -++++ +.|++++||-..
T Consensus 152 DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d---ddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~--sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 152 DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD---DDWECVQTLDGHENTVWSLAFDNIGS-RLVSC--SDDGTVSIWRLY 225 (312)
T ss_pred cccEEEEcCCcceeEEeccCCeEEEEeecCC---CCeeEEEEecCccceEEEEEecCCCc-eEEEe--cCCcceEeeeec
Confidence 9999999999999999999999999987743 23478999999999999999999995 45555 589999999865
Q ss_pred CCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC------ceEE-EEeCCCCCEEEEEEeCC-CCEEEE
Q psy4876 500 SGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL------VKVA-ELHGHSARVLNLAMSPD-ETTVLS 571 (609)
Q Consensus 500 t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~------~~~~-~l~~h~~~V~~l~~spd-g~~L~s 571 (609)
+. -...+...+..+.|. ...|++ +..|+.|++|.-... +.+. .-..|...|++++|.|. ...|++
T Consensus 226 ~~---~~~~~sr~~Y~v~W~--~~~IaS--~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s 298 (312)
T KOG0645|consen 226 TD---LSGMHSRALYDVPWD--NGVIAS--GGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLAS 298 (312)
T ss_pred cC---cchhcccceEeeeec--ccceEe--ccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceee
Confidence 22 112234578889998 455666 447999999976532 2222 22468889999999995 679999
Q ss_pred EECCCCEEEEEcC
Q psy4876 572 AGADETLRLWKIF 584 (609)
Q Consensus 572 ~s~Dg~I~iWdl~ 584 (609)
|+.||.|++|.+.
T Consensus 299 ~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 299 GGDDGIVNFWELE 311 (312)
T ss_pred cCCCceEEEEEec
Confidence 9999999999875
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-31 Score=243.91 Aligned_cols=264 Identities=21% Similarity=0.322 Sum_probs=230.2
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
|..||.|...|++ .||++....|++||+.+ ++..++.+++ |...|++|.|..+
T Consensus 40 dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S-------------------------~np~Pv~t~e~h~kNVtaVgF~~d 94 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAGNQHVRLYDLNS-------------------------NNPNPVATFEGHTKNVTAVGFQCD 94 (311)
T ss_pred ccceeeEEEcCCcchhhhccCCeeEEEEccC-------------------------CCCCceeEEeccCCceEEEEEeec
Confidence 6679999999996 88999999999999999 7777888888 9999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGL 424 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 424 (609)
|+.+++|+.||+++|||++...+.+.++ |..+|.++..+ ...|++|..+|.|++||+.........+......|.++
T Consensus 95 grWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl 173 (311)
T KOG0315|consen 95 GRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSL 173 (311)
T ss_pred CeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeE
Confidence 9999999999999999999977777776 77999999995 57899999999999999998643334445556789999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC-ce
Q psy4876 425 KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG-AC 503 (609)
Q Consensus 425 ~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~-~~ 503 (609)
...|||.+++.+.+.|..++|++-..+.....+++.++..|.+.+..+.++|++++ |+++ +.|.+++||++++. +.
T Consensus 174 ~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~-lat~--ssdktv~iwn~~~~~kl 250 (311)
T KOG0315|consen 174 TVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY-LATC--SSDKTVKIWNTDDFFKL 250 (311)
T ss_pred EEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcE-EEee--cCCceEEEEecCCceee
Confidence 99999999999999999999999887666667899999999999999999999864 5555 37999999999987 44
Q ss_pred eEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEe
Q psy4876 504 LDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMS 563 (609)
Q Consensus 504 ~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~s 563 (609)
...++.+ ..+..++||.+|.||++ |+.|+.+++|++..++.+....+|.....|++..
T Consensus 251 e~~l~gh~rWvWdc~FS~dg~YlvT--assd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 251 ELVLTGHQRWVWDCAFSADGEYLVT--ASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EEEeecCCceEEeeeeccCccEEEe--cCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 4455544 47999999999999999 4589999999999999999999998888888764
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-31 Score=255.71 Aligned_cols=292 Identities=22% Similarity=0.337 Sum_probs=250.0
Q ss_pred CccccCCCccccccCCccCCceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccce
Q psy4876 249 TSRYIPLTADRILDAPEIQNDYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAI 326 (609)
Q Consensus 249 ~~r~i~~~p~~il~ap~~~~~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (609)
+..+.|-.-.+++..+ .-+|.|+++.|.+ +++++.|++|.|||+++ +.+
T Consensus 135 PeWHapwKl~rVi~gH----lgWVr~vavdP~n~wf~tgs~DrtikIwDlat-------------------------g~L 185 (460)
T KOG0285|consen 135 PEWHAPWKLYRVISGH----LGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-------------------------GQL 185 (460)
T ss_pred ccccCcceehhhhhhc----cceEEEEeeCCCceeEEecCCCceeEEEEccc-------------------------CeE
Confidence 3344444445555543 3479999999986 66688999999999999 654
Q ss_pred eeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEE
Q psy4876 327 DHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHD 403 (609)
Q Consensus 327 ~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd 403 (609)
. .++. |...|..|++|+...||++++.|+.|+.||++..+.++.+.+|-..|.|++.+ -+.|++|++|.++++||
T Consensus 186 k--ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWD 263 (460)
T KOG0285|consen 186 K--LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWD 263 (460)
T ss_pred E--EeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEee
Confidence 3 4555 88999999999999999999999999999999999999999999999999997 47999999999999999
Q ss_pred cCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEE
Q psy4876 404 VRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 404 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla 483 (609)
+++. ..+..+.+|...|..+.+.|-...+++|+.|++|++||++.+ +....+..|...|.+++.+|.. ++++
T Consensus 264 iRtr-~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~ag------kt~~tlt~hkksvral~lhP~e-~~fA 335 (460)
T KOG0285|consen 264 IRTR-ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAG------KTMITLTHHKKSVRALCLHPKE-NLFA 335 (460)
T ss_pred eccc-ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccC------ceeEeeecccceeeEEecCCch-hhhh
Confidence 9997 589999999999999999997778999999999999999999 7788899999999999999975 6788
Q ss_pred EEeccCCCeEEEEECCCCceeEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe-----C---CC
Q psy4876 484 SGGGTADRHIYFWNVSSGACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH-----G---HS 554 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t~~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~-----~---h~ 554 (609)
+++ -..|+-|++..|..+..+..+. .+.+++.+.|+-++ + |.++|.|.+||.+++.....+. | .+
T Consensus 336 Sas---~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~-~--G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sE 409 (460)
T KOG0285|consen 336 SAS---PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLV-S--GGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESE 409 (460)
T ss_pred ccC---CccceeccCCccchhhccccccceeeeeeeccCceEE-E--cCCceEEEEEecCcCcccccccccccCCccccc
Confidence 763 6789999999999988887665 67888888776444 4 6689999999999886655442 1 34
Q ss_pred CCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 555 ARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 555 ~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
..|.+.+|...|..|++|..|.+|++|.-.+
T Consensus 410 agI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 410 AGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cceeEEeecccCceEEeccCCcceEEEeccc
Confidence 6799999999999999999999999998654
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-30 Score=268.94 Aligned_cols=241 Identities=21% Similarity=0.390 Sum_probs=219.9
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecC-CeEEEEEcCCCCeeE
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRC-GNIVHHDVRSRDHKV 411 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~d-g~I~iwd~~~~~~~~ 411 (609)
...|++.+|++..+.||+|-..|.+.+|++....+++.+.-...+|..++|| |+.|+.|+.. |.+.||+.... ..+
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE-sYV 343 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-SYV 343 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc-cee
Confidence 3789999999999999999999999999999999999999888999999997 9999998764 89999999985 577
Q ss_pred EEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 412 ALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
...++|...+.+++++|||+++|+|+.||.|+|||...+ -++.++..|...|+++.|+..|..++.+ +.||
T Consensus 344 lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg------fC~vTFteHts~Vt~v~f~~~g~~llss---SLDG 414 (893)
T KOG0291|consen 344 LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG------FCFVTFTEHTSGVTAVQFTARGNVLLSS---SLDG 414 (893)
T ss_pred eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc------eEEEEeccCCCceEEEEEEecCCEEEEe---ecCC
Confidence 788899999999999999999999999999999999988 8999999999999999999998655554 4899
Q ss_pred eEEEEECCCCceeEEEcCCC--CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEE
Q psy4876 492 HIYFWNVSSGACLDSIDTKS--QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTV 569 (609)
Q Consensus 492 ~I~iwd~~t~~~~~~~~~~~--~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L 569 (609)
+|+.||+....+.+++.... +..+++..|.|..++++ +.+.=.|+||++.+|+.+..+.||+++|.+++|+|+|..|
T Consensus 415 tVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG-~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~L 493 (893)
T KOG0291|consen 415 TVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAG-AQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLL 493 (893)
T ss_pred eEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEee-ccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeE
Confidence 99999999999999998765 67788888889888774 3344569999999999999999999999999999999999
Q ss_pred EEEECCCCEEEEEcCCC
Q psy4876 570 LSAGADETLRLWKIFEK 586 (609)
Q Consensus 570 ~s~s~Dg~I~iWdl~~~ 586 (609)
++++.|.+||+||++..
T Consensus 494 aS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 494 ASGSWDKTVRIWDIFSS 510 (893)
T ss_pred EeccccceEEEEEeecc
Confidence 99999999999999986
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-31 Score=279.74 Aligned_cols=289 Identities=17% Similarity=0.311 Sum_probs=228.3
Q ss_pred EEEEEecCCC-eEE-EEcCCeEEEEeCCCCCCCceE---EecCCcccc--ccccccccccceeeeeeecCCCCeEEEEEc
Q psy4876 272 LNLIDWSHFN-VLA-VALGGSIYLWNGESDSNSKYI---ICQSPLVQE--LTSKCIQDNRAIDHLMDLEGNENVCSVAWI 344 (609)
Q Consensus 272 v~~l~wsp~~-lla-~s~dg~I~iWd~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~l~~~~h~~~V~~v~~s 344 (609)
++|.+|++|. ++| +-.|..|++|.+...+..... -.-.++... +......+........-..|.++|..+.|+
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs 460 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS 460 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence 8899999986 555 556889999999842100000 000010000 000111111222222223399999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
|+.++|++++.|++|++|.+.+..++..+.+|..+|+.+.|. |.+|++++.|++-++|..... .+.+.+.+|-..|.
T Consensus 461 Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-~PlRifaghlsDV~ 539 (707)
T KOG0263|consen 461 PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-KPLRIFAGHLSDVD 539 (707)
T ss_pred ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC-Cchhhhcccccccc
Confidence 999999999999999999999999999999999999999994 799999999999999999885 58899999999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc
Q psy4876 423 GLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA 502 (609)
Q Consensus 423 ~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~ 502 (609)
|+.|+|+..|+|+||.|.+|++||+.+| ..++.|.+|.++|.+|+|+|+| ..|++| +.|+.|.+||+.++.
T Consensus 540 cv~FHPNs~Y~aTGSsD~tVRlWDv~~G------~~VRiF~GH~~~V~al~~Sp~G-r~LaSg--~ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 540 CVSFHPNSNYVATGSSDRTVRLWDVSTG------NSVRIFTGHKGPVTALAFSPCG-RYLASG--DEDGLIKIWDLANGS 610 (707)
T ss_pred eEEECCcccccccCCCCceEEEEEcCCC------cEEEEecCCCCceEEEEEcCCC-ceEeec--ccCCcEEEEEcCCCc
Confidence 9999999999999999999999999999 7899999999999999999988 567776 499999999999999
Q ss_pred eeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc------------------------eEEEEeCCCCCE
Q psy4876 503 CLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV------------------------KVAELHGHSARV 557 (609)
Q Consensus 503 ~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~------------------------~~~~l~~h~~~V 557 (609)
.+..+..| +.|.++.|+.+|..|++ |+.|++|++||+..-. .+..+.....+|
T Consensus 611 ~v~~l~~Ht~ti~SlsFS~dg~vLas--gg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv 688 (707)
T KOG0263|consen 611 LVKQLKGHTGTIYSLSFSRDGNVLAS--GGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPV 688 (707)
T ss_pred chhhhhcccCceeEEEEecCCCEEEe--cCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceE
Confidence 99888765 58999999999999999 5589999999974321 333444445677
Q ss_pred EEEEEeCCCCEEEEE
Q psy4876 558 LNLAMSPDETTVLSA 572 (609)
Q Consensus 558 ~~l~~spdg~~L~s~ 572 (609)
.++.|....-.|+.|
T Consensus 689 ~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 689 VGLHFTRRNLLLAVG 703 (707)
T ss_pred EEEEEeccceeEEec
Confidence 777777655444443
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=260.53 Aligned_cols=250 Identities=21% Similarity=0.311 Sum_probs=230.3
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
|...|+.+-|+|+-..+++++.|++|++||..++++.+.+++|...|..|+|+ |.+|++++.|-.+.+||..+...++
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ 186 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCI 186 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999995 7999999999999999999866678
Q ss_pred EEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 412 ALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
..+.+|...|.+++|-|.|.++++++.|.+|+.|++.++ .++.++.+|...|..++.+.|| .+++++ +.|.
T Consensus 187 ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg------~cv~t~~~h~ewvr~v~v~~DG-ti~As~--s~dq 257 (406)
T KOG0295|consen 187 KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG------YCVKTFPGHSEWVRMVRVNQDG-TIIASC--SNDQ 257 (406)
T ss_pred HHhcCcccceeeEEEEecCCeeeecccccceeEEecccc------eeEEeccCchHhEEEEEecCCe-eEEEec--CCCc
Confidence 888999999999999999999999999999999999999 8999999999999999999988 688887 4999
Q ss_pred eEEEEECCCCceeEEEcCCC-CeEEEEEcCC---------------CCeEEEEEecCCCeEEEEECCCCceEEEEeCCCC
Q psy4876 492 HIYFWNVSSGACLDSIDTKS-QVCALLWNSD---------------YKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSA 555 (609)
Q Consensus 492 ~I~iwd~~t~~~~~~~~~~~-~v~sl~~s~~---------------g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~ 555 (609)
+|++|-+.+++|...+..+. .|.+++|-|. +.++.+ ++.|++|++||+.++.++.++.+|..
T Consensus 258 tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s--~SrDktIk~wdv~tg~cL~tL~ghdn 335 (406)
T KOG0295|consen 258 TLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS--GSRDKTIKIWDVSTGMCLFTLVGHDN 335 (406)
T ss_pred eEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe--ecccceEEEEeccCCeEEEEEecccc
Confidence 99999999999888887664 8888888763 235555 66999999999999999999999999
Q ss_pred CEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 556 RVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 556 ~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
.|..++|+|.|+||+++..|++|++||+.+....+....
T Consensus 336 wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a 374 (406)
T KOG0295|consen 336 WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA 374 (406)
T ss_pred eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC
Confidence 999999999999999999999999999999998876654
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-29 Score=255.20 Aligned_cols=309 Identities=18% Similarity=0.303 Sum_probs=242.2
Q ss_pred CccccCCCccccccCCccCCceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccce
Q psy4876 249 TSRYIPLTADRILDAPEIQNDYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAI 326 (609)
Q Consensus 249 ~~r~i~~~p~~il~ap~~~~~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (609)
...+..-+|.+.-.....+.. +|+++.|+||| +++++.||.|+|||-.+ ++.
T Consensus 171 ~v~ffeGPPFKFk~s~r~Hsk-FV~~VRysPDG~~Fat~gsDgki~iyDGkt-------------------------ge~ 224 (603)
T KOG0318|consen 171 TVAFFEGPPFKFKSSFREHSK-FVNCVRYSPDGSRFATAGSDGKIYIYDGKT-------------------------GEK 224 (603)
T ss_pred eEEEeeCCCeeeeeccccccc-ceeeEEECCCCCeEEEecCCccEEEEcCCC-------------------------ccE
Confidence 344455555555544443333 59999999997 77799999999999888 443
Q ss_pred eeeee-ec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCC---CceEEEEecCCEEEEEecCCeEEE
Q psy4876 327 DHLMD-LE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHD---VRVGALAWNTYILSSGSRCGNIVH 401 (609)
Q Consensus 327 ~~l~~-~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~---~~V~~l~~~~~~L~sgs~dg~I~i 401 (609)
....+ -. |.+.|.+++|+||+..+++++.|.+++|||+.+.++++++.... .....+-|....|++.+.+|+|.+
T Consensus 225 vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ 304 (603)
T KOG0318|consen 225 VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINY 304 (603)
T ss_pred EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEE
Confidence 22222 22 99999999999999999999999999999999999999886433 233445577888999999999999
Q ss_pred EEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCC---------------------------
Q psy4876 402 HDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTF--------------------------- 454 (609)
Q Consensus 402 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~--------------------------- 454 (609)
++..... ....+.+|...|+++..++|+.+|++|+.||.|.-||..++....
T Consensus 305 ln~~d~~-~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~D 383 (603)
T KOG0318|consen 305 LNPSDPS-VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWD 383 (603)
T ss_pred ecccCCC-hhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecC
Confidence 9999886 889999999999999999999999999999999999987653210
Q ss_pred ---------------------Cccc-------------------eEeecCCc--------ccEEEEEEcCCCCcEEEEEe
Q psy4876 455 ---------------------STQP-------------------IHSLSRHQ--------AAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 455 ---------------------~~~~-------------------~~~~~~h~--------~~V~~l~~sp~~~~llasgg 486 (609)
..+| +..++.+. -...+++++|++ ..++.||
T Consensus 384 d~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG 462 (603)
T KOG0318|consen 384 DTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGG 462 (603)
T ss_pred CeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC-CEEEEec
Confidence 0000 00011111 123567778877 4666665
Q ss_pred ccCCCeEEEEECCCCcee---EEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE-EeCCCCCEEEEEE
Q psy4876 487 GTADRHIYFWNVSSGACL---DSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE-LHGHSARVLNLAM 562 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t~~~~---~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~-l~~h~~~V~~l~~ 562 (609)
.|++|++|.+..+... ..+++...++.++|+||+.+|++ +...+.+.+||..+.+.... +.-|+.+|.+++|
T Consensus 463 --~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~--~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aW 538 (603)
T KOG0318|consen 463 --QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAA--GDASRKVVLYDVASREVKTNRWAFHTAKINCVAW 538 (603)
T ss_pred --ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEE--eccCCcEEEEEcccCceecceeeeeeeeEEEEEe
Confidence 8999999999875533 44567789999999999999999 66899999999988776443 3459999999999
Q ss_pred eCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 563 SPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 563 spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
+|+..+||||+.|-.|.||++..+...
T Consensus 539 sP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 539 SPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred CCCceEEEeccccceEEEEEccChhhh
Confidence 999999999999999999999876654
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.4e-30 Score=241.82 Aligned_cols=255 Identities=18% Similarity=0.271 Sum_probs=219.8
Q ss_pred eeeeeeec-CCCCeEEEEEccCC-CEEEEEeCCCeEEEEeCCC-----CeeEEEecCCCCceEEEEe--cCCEEEEEecC
Q psy4876 326 IDHLMDLE-GNENVCSVAWIQEG-YMLGVGTSLGTVQLWDVSA-----KKKCRTMDGHDVRVGALAW--NTYILSSGSRC 396 (609)
Q Consensus 326 ~~~l~~~~-h~~~V~~v~~spdg-~~Lasgs~dg~I~iwd~~~-----~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~d 396 (609)
.....+++ |.+.|+.++..+.+ ..|++++.|..+.+|++.. |..++.+.||...|..+.. ++++.++++.|
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 34445666 99999999999875 7889999999999998854 5678999999999999887 78999999999
Q ss_pred CeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC--cccEEEEEE
Q psy4876 397 GNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH--QAAVKAIAW 474 (609)
Q Consensus 397 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h--~~~V~~l~~ 474 (609)
+++++||+.++ +..+.+.+|...|.+++|++|.+.+++|+.|++|.+|+.... +..++..+ ...|.|+.|
T Consensus 85 ~~lrlWDl~~g-~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-------ck~t~~~~~~~~WVscvrf 156 (315)
T KOG0279|consen 85 GTLRLWDLATG-ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-------CKYTIHEDSHREWVSCVRF 156 (315)
T ss_pred ceEEEEEecCC-cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-------EEEEEecCCCcCcEEEEEE
Confidence 99999999998 588899999999999999999999999999999999998864 55555444 789999999
Q ss_pred cCCC-CcEEEEEeccCCCeEEEEECCCCceeEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC
Q psy4876 475 CPWS-PNVLASGGGTADRHIYFWNVSSGACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 475 sp~~-~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~ 552 (609)
+|.. .-+++++ +.|++|++||+++.+....+.++. .++.+.++|||...++ |..||.+.+||+..++.+..+ +
T Consensus 157 sP~~~~p~Ivs~--s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas--Ggkdg~~~LwdL~~~k~lysl-~ 231 (315)
T KOG0279|consen 157 SPNESNPIIVSA--SWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS--GGKDGEAMLWDLNEGKNLYSL-E 231 (315)
T ss_pred cCCCCCcEEEEc--cCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEec--CCCCceEEEEEccCCceeEec-c
Confidence 9985 4466665 499999999999999888887664 8999999999999988 779999999999999998776 5
Q ss_pred CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 553 HSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 553 h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
|...|.+++|+|+..+|+.+. +..|+|||+..+........
T Consensus 232 a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 232 AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKL 272 (315)
T ss_pred CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccc
Confidence 889999999999987777664 55699999998776544433
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.7e-32 Score=261.65 Aligned_cols=272 Identities=22% Similarity=0.415 Sum_probs=236.1
Q ss_pred EEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEE
Q psy4876 272 LNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYML 350 (609)
Q Consensus 272 v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~L 350 (609)
|.|+.+..+.+++|..|++|+|||..+ . ..+..+. |.+.|.|+.|. .+.|
T Consensus 200 VYClQYDD~kiVSGlrDnTikiWD~n~-------------------------~--~c~~~L~GHtGSVLCLqyd--~rvi 250 (499)
T KOG0281|consen 200 VYCLQYDDEKIVSGLRDNTIKIWDKNS-------------------------L--ECLKILTGHTGSVLCLQYD--ERVI 250 (499)
T ss_pred eEEEEecchhhhcccccCceEEecccc-------------------------H--HHHHhhhcCCCcEEeeecc--ceEE
Confidence 788999888899999999999999977 3 3344444 99999999985 4599
Q ss_pred EEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCC--eeEEEEccCCCCeEEEEEcc
Q psy4876 351 GVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRD--HKVALLQNHTQEVCGLKWSP 428 (609)
Q Consensus 351 asgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~sp 428 (609)
++|++|.+|+|||+++++.+.++-+|...|..+.|+..++++++.|.+|.+||+.... .....+.+|...|+.+.|+
T Consensus 251 isGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd- 329 (499)
T KOG0281|consen 251 VSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD- 329 (499)
T ss_pred EecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc-
Confidence 9999999999999999999999999999999999999999999999999999998754 2345677999999999996
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc
Q psy4876 429 DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID 508 (609)
Q Consensus 429 dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~ 508 (609)
.+++++++.|.+|++|++.++ +.++++.+|...|-|+.+. ..++++| +.|.+|++||+..|.|+..++
T Consensus 330 -~kyIVsASgDRTikvW~~st~------efvRtl~gHkRGIAClQYr---~rlvVSG--SSDntIRlwdi~~G~cLRvLe 397 (499)
T KOG0281|consen 330 -DKYIVSASGDRTIKVWSTSTC------EFVRTLNGHKRGIACLQYR---DRLVVSG--SSDNTIRLWDIECGACLRVLE 397 (499)
T ss_pred -cceEEEecCCceEEEEeccce------eeehhhhcccccceehhcc---CeEEEec--CCCceEEEEeccccHHHHHHh
Confidence 569999999999999999998 8999999999999998874 3677776 699999999999999999999
Q ss_pred CCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc---------eEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCE
Q psy4876 509 TKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV---------KVAELHGHSARVLNLAMSPDETTVLSAGADETL 578 (609)
Q Consensus 509 ~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~---------~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I 578 (609)
+|. -|.++.|. .+.+++ |..||+|+|||+..+. ++..+..|+++|..+.| |...+++++.|.+|
T Consensus 398 GHEeLvRciRFd--~krIVS--GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtI 471 (499)
T KOG0281|consen 398 GHEELVRCIRFD--NKRIVS--GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTI 471 (499)
T ss_pred chHHhhhheeec--Cceeee--ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeE
Confidence 886 68888884 467777 6689999999997653 34455679999999999 67789999999999
Q ss_pred EEEEcCCCccchh
Q psy4876 579 RLWKIFEKVKSKK 591 (609)
Q Consensus 579 ~iWdl~~~~~~~k 591 (609)
.|||+.++.+...
T Consensus 472 LiWdFl~~~~~~~ 484 (499)
T KOG0281|consen 472 LIWDFLNGPPSAA 484 (499)
T ss_pred EEEEcCCCCcccc
Confidence 9999998877643
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-29 Score=240.27 Aligned_cols=252 Identities=16% Similarity=0.286 Sum_probs=227.3
Q ss_pred eeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCC
Q psy4876 330 MDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRS 406 (609)
Q Consensus 330 ~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~ 406 (609)
..+. |.+.|.++.|++|+++|++++.||.+.|||.-+...+..+.-....|..++| +++++++|+.|....||++.+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 4566 9999999999999999999999999999999999999999989999999999 689999999999999999986
Q ss_pred CC-----eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcE
Q psy4876 407 RD-----HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 407 ~~-----~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 481 (609)
.+ .....+.+|++.+.++.|.+|+ +|++++.|.++.+||++++ +.+..|.+|.+.|.+|++.|...+.
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g------~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETG------QQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccc------eEEEEecCCcccEEEEecCCCCCCe
Confidence 52 3456688999999999998855 7899999999999999999 8899999999999999999966688
Q ss_pred EEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC--CCCCEE
Q psy4876 482 LASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG--HSARVL 558 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~--h~~~V~ 558 (609)
+++|+ -|+..++||++.+.++++|.+| +.|.++.|.|+|.-+++ |++|++.++||++....+..+.. -..+|+
T Consensus 202 FvSg~--cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat--GSDD~tcRlyDlRaD~~~a~ys~~~~~~git 277 (343)
T KOG0286|consen 202 FVSGG--CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT--GSDDATCRLYDLRADQELAVYSHDSIICGIT 277 (343)
T ss_pred EEecc--cccceeeeeccCcceeEeecccccccceEEEccCCCeeee--cCCCceeEEEeecCCcEEeeeccCcccCCce
Confidence 88875 8999999999999999999877 58999999999999998 77999999999999999888863 236799
Q ss_pred EEEEeCCCCEEEEEECCCCEEEEEcCCCccchhh
Q psy4876 559 NLAMSPDETTVLSAGADETLRLWKIFEKVKSKKK 592 (609)
Q Consensus 559 ~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~ 592 (609)
+++||-.|++|++|..|.++.+||.-.++.....
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L 311 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL 311 (343)
T ss_pred eEEEcccccEEEeeecCCceeEeeccccceEEEe
Confidence 9999999999999999999999999877655443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-29 Score=289.38 Aligned_cols=283 Identities=16% Similarity=0.285 Sum_probs=227.0
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccC
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQE 346 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spd 346 (609)
...|.+++|+|++ +++++.|+.|+||+........ . ........+.+...|.+++|++.
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~---------~----------~~~~~~~~~~~~~~v~~l~~~~~ 543 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG---------R----------DIHYPVVELASRSKLSGICWNSY 543 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc---------c----------ccccceEEecccCceeeEEeccC
Confidence 4569999999986 6678899999999986410000 0 00112223335578999999875
Q ss_pred -CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 347 -GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 347 -g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
+.+||+++.||.|+|||+.+++.+..+.+|...|.+++|+ +.+|++|+.||.|++||++++. .+..+..+ ..|.
T Consensus 544 ~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~~~~-~~v~ 621 (793)
T PLN00181 544 IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTIKTK-ANIC 621 (793)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEEecC-CCeE
Confidence 6899999999999999999999999999999999999994 5799999999999999999864 56666544 6799
Q ss_pred EEEEc-cCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 423 GLKWS-PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 423 ~l~~s-pdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
++.|+ ++|.+|++|+.||.|++||++... .++..+.+|...|.++.|. ++ ..+++++ .|+.|++||+..+
T Consensus 622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~-----~~~~~~~~h~~~V~~v~f~-~~-~~lvs~s--~D~~ikiWd~~~~ 692 (793)
T PLN00181 622 CVQFPSESGRSLAFGSADHKVYYYDLRNPK-----LPLCTMIGHSKTVSYVRFV-DS-STLVSSS--TDNTLKLWDLSMS 692 (793)
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCC-----ccceEecCCCCCEEEEEEe-CC-CEEEEEE--CCCEEEEEeCCCC
Confidence 99995 579999999999999999998762 3567778999999999997 34 3566653 7999999999743
Q ss_pred ------ceeEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEE-------------eCCCCCEEEEE
Q psy4876 502 ------ACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL-------------HGHSARVLNLA 561 (609)
Q Consensus 502 ------~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l-------------~~h~~~V~~l~ 561 (609)
.++..+..+. .+..+.|++++.+|++ |+.|+.|+||+......+..+ ..|...|.+++
T Consensus 693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~las--gs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ 770 (793)
T PLN00181 693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIAT--GSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC 770 (793)
T ss_pred ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEE--EeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence 5677777654 6889999999999988 558999999998655433222 23456799999
Q ss_pred EeCCCCEEEEEECCCCEEEEEc
Q psy4876 562 MSPDETTVLSAGADETLRLWKI 583 (609)
Q Consensus 562 ~spdg~~L~s~s~Dg~I~iWdl 583 (609)
|+|++..|++|+.||.|+||++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999997
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=262.79 Aligned_cols=243 Identities=24% Similarity=0.425 Sum_probs=216.7
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
....|..|.|.|+|+.|++|+..|.+.+|+..+-.....++.|+..|.++.| ++.++++|+.+|.|++|+.... .+
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn--nV 172 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN--NV 172 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh--hh
Confidence 4568999999999999999999999999998766666677899999999999 6899999999999999998764 45
Q ss_pred EEEccCC-CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCC
Q psy4876 412 ALLQNHT-QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD 490 (609)
Q Consensus 412 ~~~~~h~-~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~D 490 (609)
..+..|. ..|++++|+|....|++++.||+|+|||.... +....+.+|...|++++|+|.. .++++|| .|
T Consensus 173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~------kee~vL~GHgwdVksvdWHP~k-gLiasgs--kD 243 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP------KEERVLRGHGWDVKSVDWHPTK-GLIASGS--KD 243 (464)
T ss_pred HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC------chhheeccCCCCcceeccCCcc-ceeEEcc--CC
Confidence 5555555 89999999999999999999999999999987 5666779999999999999975 6888874 89
Q ss_pred CeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeC-CCCE
Q psy4876 491 RHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP-DETT 568 (609)
Q Consensus 491 g~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~ 568 (609)
..|++||.++|.|+.++..+ ..|..+.|++++++|++ ++.|..+++||+++++.+..+++|...|+++.|+| ...+
T Consensus 244 nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt--~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLT--GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESL 321 (464)
T ss_pred ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEE--ccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccc
Confidence 99999999999999999766 48999999999999999 45899999999999999999999999999999999 4568
Q ss_pred EEEEECCCCEEEEEcCCCccc
Q psy4876 569 VLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 569 L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
|.+|+.||.|..|.+...++.
T Consensus 322 ftsgg~Dgsvvh~~v~~~~p~ 342 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVVGLEEPL 342 (464)
T ss_pred eeeccCCCceEEEeccccccc
Confidence 889999999999999844443
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-30 Score=262.75 Aligned_cols=280 Identities=17% Similarity=0.294 Sum_probs=247.0
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
.|.+++++|.. +|++-..|.|.|||.++ .. .+..++ .+.+|.+..|-+..
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyet-------------------------qt--mVksfeV~~~PvRa~kfiaRk 67 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYET-------------------------QT--MVKSFEVSEVPVRAAKFIARK 67 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEeccc-------------------------ce--eeeeeeecccchhhheeeecc
Confidence 47889999986 77888899999999988 33 334444 67899999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecC--CEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT--YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~--~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
+++++|+.|..|+||+..+++.+..+..|..-|.+++.++ .++++++.|-+|++||.+....+.+++.+|+..|.+++
T Consensus 68 nWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 68 NWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVA 147 (794)
T ss_pred ceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEE
Confidence 9999999999999999999999999999999999999975 68999999999999999998888999999999999999
Q ss_pred Ecc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCC-cEEEEEeccCCCeEEEEECCCCce
Q psy4876 426 WSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSP-NVLASGGGTADRHIYFWNVSSGAC 503 (609)
Q Consensus 426 ~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~llasggGs~Dg~I~iwd~~t~~~ 503 (609)
|+| |.+.||+++-|++|+||.+.+. .+..++.+|...|.|+.+-+-|. -.+++| ++|..|+|||..+..|
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslgs~------~~nfTl~gHekGVN~Vdyy~~gdkpylIsg--aDD~tiKvWDyQtk~C 219 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLGSP------HPNFTLEGHEKGVNCVDYYTGGDKPYLISG--ADDLTIKVWDYQTKSC 219 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcCCC------CCceeeeccccCcceEEeccCCCcceEEec--CCCceEEEeecchHHH
Confidence 999 7889999999999999999887 78999999999999999988653 356665 5999999999999999
Q ss_pred eEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEE
Q psy4876 504 LDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWK 582 (609)
Q Consensus 504 ~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWd 582 (609)
++++++|. .|..+.|+|.-..+++ |++||+++||+..+.+....+.-.-++|+||+-.+.+..++.|...|.|. .+
T Consensus 220 V~TLeGHt~Nvs~v~fhp~lpiiis--gsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~ 296 (794)
T KOG0276|consen 220 VQTLEGHTNNVSFVFFHPELPIIIS--GSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VK 296 (794)
T ss_pred HHHhhcccccceEEEecCCCcEEEE--ecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EE
Confidence 99999875 8999999999999988 66999999999999888888877778999999999888888877666654 34
Q ss_pred cCCCcc
Q psy4876 583 IFEKVK 588 (609)
Q Consensus 583 l~~~~~ 588 (609)
+-..++
T Consensus 297 lgreeP 302 (794)
T KOG0276|consen 297 LGREEP 302 (794)
T ss_pred ccCCCC
Confidence 444433
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=251.07 Aligned_cols=253 Identities=21% Similarity=0.343 Sum_probs=229.3
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
|.+.|.||++.|...++++|+.|++|.|||+.++++..++.+|...|..++++ ..+|++++.|+.|+.||+... +.+
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n-kvI 228 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN-KVI 228 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh-hhH
Confidence 89999999999999999999999999999999999999999999999999995 468999999999999999987 588
Q ss_pred EEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 412 ALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
+.+.+|-+.|.|++.+|.-..|++|+.|.+++|||+++. ..++.+.+|..+|..+.+.|..+.++. | +.|+
T Consensus 229 R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr------~~V~~l~GH~~~V~~V~~~~~dpqvit-~--S~D~ 299 (460)
T KOG0285|consen 229 RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR------ASVHVLSGHTNPVASVMCQPTDPQVIT-G--SHDS 299 (460)
T ss_pred HHhccccceeEEEeccccceeEEecCCcceEEEeeeccc------ceEEEecCCCCcceeEEeecCCCceEE-e--cCCc
Confidence 889999999999999999999999999999999999998 789999999999999999998876654 3 5999
Q ss_pred eEEEEECCCCceeEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEE
Q psy4876 492 HIYFWNVSSGACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVL 570 (609)
Q Consensus 492 ~I~iwd~~t~~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~ 570 (609)
+|++||++.|+...++.++. .+.+++.+|....+++++ ...|+-|+++.+..+..+.+|..-|++++...|| +++
T Consensus 300 tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas---~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~ 375 (460)
T KOG0285|consen 300 TVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS---PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLV 375 (460)
T ss_pred eEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC---CccceeccCCccchhhccccccceeeeeeeccCc-eEE
Confidence 99999999999888887664 899999999998888853 5679999999999999999999999999998776 788
Q ss_pred EEECCCCEEEEEcCCCccchhhhhhccccc
Q psy4876 571 SAGADETLRLWKIFEKVKSKKKEIKNNASK 600 (609)
Q Consensus 571 s~s~Dg~I~iWdl~~~~~~~k~~~~~~~~~ 600 (609)
+|+..|.|.+||...+..-+..+......+
T Consensus 376 ~G~dng~~~fwdwksg~nyQ~~~t~vqpGS 405 (460)
T KOG0285|consen 376 SGGDNGSIMFWDWKSGHNYQRGQTIVQPGS 405 (460)
T ss_pred EcCCceEEEEEecCcCcccccccccccCCc
Confidence 999999999999999887776654444333
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=270.90 Aligned_cols=250 Identities=24% Similarity=0.431 Sum_probs=222.0
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe--eEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK--KCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDH 409 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~ 409 (609)
+...|+++.|+++|++|++++.++.+++|+....+ ..+.+.+|...|..++| ++.++++++.|++|++||+.....
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 47889999999999999999999999999998777 78888999999999999 688999999999999999966557
Q ss_pred eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC
Q psy4876 410 KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA 489 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~ 489 (609)
.+.++.+|...|++++|+|+|+++++|+.|++|+|||++++ +++..+.+|...|.+++|++++. +++++ +.
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~------~~~~~l~~hs~~is~~~f~~d~~-~l~s~--s~ 308 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG------ECVRKLKGHSDGISGLAFSPDGN-LLVSA--SY 308 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC------eEEEeeeccCCceEEEEECCCCC-EEEEc--CC
Confidence 88999999999999999999999999999999999999998 89999999999999999999985 55555 47
Q ss_pred CCeEEEEECCCCc--eeEEEcCCC---CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCC---EEEEE
Q psy4876 490 DRHIYFWNVSSGA--CLDSIDTKS---QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSAR---VLNLA 561 (609)
Q Consensus 490 Dg~I~iwd~~t~~--~~~~~~~~~---~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~---V~~l~ 561 (609)
|+.|++||+.++. ++..+.... .++.+.|+|++.++++ +..|+.+++||+..+..+..+.+|... +.+..
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~--~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS--ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEE--ecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 9999999999999 556665432 5899999999999999 448999999999999999999999875 34445
Q ss_pred EeCCCCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 562 MSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 562 ~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
+++.+.++++|+.|+.|++|++.++....+.+.
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~ 419 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEG 419 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcC
Confidence 678999999999999999999998665554443
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=247.21 Aligned_cols=281 Identities=19% Similarity=0.383 Sum_probs=235.6
Q ss_pred eeEEEEEecCCCeEE--EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFNVLA--VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~lla--~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
..++...+||.|... +...|.|+|||... .....-.++. ..++|.+++|+.+
T Consensus 60 ~~vtVAkySPsG~yiASGD~sG~vRIWdtt~-------------------------~~hiLKnef~v~aG~I~Di~Wd~d 114 (603)
T KOG0318|consen 60 HQVTVAKYSPSGFYIASGDVSGKVRIWDTTQ-------------------------KEHILKNEFQVLAGPIKDISWDFD 114 (603)
T ss_pred ceeEEEEeCCCceEEeecCCcCcEEEEeccC-------------------------cceeeeeeeeecccccccceeCCC
Confidence 447778899998443 33459999999876 4444444555 6899999999999
Q ss_pred CCEEEEEeCC----CeEEEEeCCCCeeEEEecCCCCceEEEEe---cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 347 GYMLGVGTSL----GTVQLWDVSAKKKCRTMDGHDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 347 g~~Lasgs~d----g~I~iwd~~~~~~~~~l~~h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
+++|++.+.. |.+.+|| +|..+..+.+|...|.++.| .+..+++|++|++|.+|+-.-- +....+..|..
T Consensus 115 s~RI~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF-KFk~s~r~Hsk 191 (603)
T KOG0318|consen 115 SKRIAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF-KFKSSFREHSK 191 (603)
T ss_pred CcEEEEEecCccceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe-eeeeccccccc
Confidence 9888876543 3455665 77889999999999999999 4689999999999999986543 34556778999
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec---CCcccEEEEEEcCCCCcEEEEEeccCCCeEEEE
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS---RHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iw 496 (609)
-|.|+.|+|||.+||+++.||.|.+||-.++ +.+..+. +|.+.|.+|+|+||+..++.++ .|.+++||
T Consensus 192 FV~~VRysPDG~~Fat~gsDgki~iyDGktg------e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S---aDkt~KIW 262 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTG------EKVGELEDSDAHKGSIFALSWSPDSTQFLTVS---ADKTIKIW 262 (603)
T ss_pred ceeeEEECCCCCeEEEecCCccEEEEcCCCc------cEEEEecCCCCccccEEEEEECCCCceEEEec---CCceEEEE
Confidence 9999999999999999999999999999998 6777776 8999999999999998777664 79999999
Q ss_pred ECCCCceeEEEcCCC----CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEE
Q psy4876 497 NVSSGACLDSIDTKS----QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSA 572 (609)
Q Consensus 497 d~~t~~~~~~~~~~~----~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~ 572 (609)
|+.+.+++.++.... +...+.|- ...|++.+ .+|.|.+++...+..+..+.||...|+++..++|+++|++|
T Consensus 263 dVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVS--l~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg 338 (603)
T KOG0318|consen 263 DVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVS--LSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG 338 (603)
T ss_pred EeeccceEEEeecCCchhceEEEEEEe--CCeEEEEE--cCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee
Confidence 999999999987553 55667777 44566654 68999999999999999999999999999999999999999
Q ss_pred ECCCCEEEEEcCCCccchh
Q psy4876 573 GADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 573 s~Dg~I~iWdl~~~~~~~k 591 (609)
+.||.|.-|+...+..-+.
T Consensus 339 syDG~I~~W~~~~g~~~~~ 357 (603)
T KOG0318|consen 339 SYDGHINSWDSGSGTSDRL 357 (603)
T ss_pred ccCceEEEEecCCcccccc
Confidence 9999999999988776543
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=234.61 Aligned_cols=263 Identities=21% Similarity=0.361 Sum_probs=223.7
Q ss_pred cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEeCC
Q psy4876 287 LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG-YMLGVGTSLGTVQLWDVS 365 (609)
Q Consensus 287 ~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg-~~Lasgs~dg~I~iwd~~ 365 (609)
..|.+.|.++... +.+.....+...+.+..|+|++.. +.+++++.||.++|||+.
T Consensus 36 G~G~L~ile~~~~------------------------~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 36 GNGRLFILEVTDP------------------------KGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred cCceEEEEecCCC------------------------CCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 3689999998641 566777777778999999999975 788899999999999964
Q ss_pred C-CeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEcc-CCCEEEEEeCCC
Q psy4876 366 A-KKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSP-DGRYLASGGNDN 440 (609)
Q Consensus 366 ~-~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg 440 (609)
. ...+..++.|...|.++.|+ ...+++++.||+|++|+.... ..+.++.+|...|...+|+| .+++|++++.|+
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC-cceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 3 36788999999999999995 678888899999999999876 57889999999999999999 788999999999
Q ss_pred cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC-ceeEEEcCCC-CeEEEEE
Q psy4876 441 LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG-ACLDSIDTKS-QVCALLW 518 (609)
Q Consensus 441 ~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~-~~~~~~~~~~-~v~sl~~ 518 (609)
++++||++... +.+ .+..|...|.++.|+....+++++|+ .|+.|+.||+++- .++.++..++ .|..+.|
T Consensus 171 ~l~lwdvr~~g-----k~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~--vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~ 242 (311)
T KOG0277|consen 171 TLRLWDVRSPG-----KFM-SIEAHNSEILCCDWSKYNHNVLATGG--VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKF 242 (311)
T ss_pred eEEEEEecCCC-----cee-EEEeccceeEeecccccCCcEEEecC--CCceEEEEehhhccccceeecCCceEEEEEec
Confidence 99999998762 333 48889999999999999999999985 8999999999864 4667776665 8999999
Q ss_pred cCCCCeEEEEEecCCCeEEEEECCCC-ceEEEEeCCCCCEEEEEEeC-CCCEEEEEECCCCEEEEEc
Q psy4876 519 NSDYKELVSAHGFAQNQLIIWKYPSL-VKVAELHGHSARVLNLAMSP-DETTVLSAGADETLRLWKI 583 (609)
Q Consensus 519 s~~g~~l~~~sG~~dg~I~Iwd~~~~-~~~~~l~~h~~~V~~l~~sp-dg~~L~s~s~Dg~I~iWdl 583 (609)
+|...-+++.+ +.|-+++|||.... ..+.....|++-|..+.|++ ++.++|+++-|+.++||+-
T Consensus 243 Sph~~~lLaSa-sYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 243 SPHHASLLASA-SYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred CcchhhHhhhc-cccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99876665543 37999999999744 44555667899999999998 6779999999999999983
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=263.54 Aligned_cols=272 Identities=22% Similarity=0.325 Sum_probs=233.3
Q ss_pred ecCC-CeEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEEEEE
Q psy4876 277 WSHF-NVLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYMLGVG 353 (609)
Q Consensus 277 wsp~-~lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~Lasg 353 (609)
|.|+ ..+| ++..+.+++++..+ ..+. -+. |.+.|.++....+|.+|++|
T Consensus 332 lG~e~~~laVATNs~~lr~y~~~~-------------------------~~c~---ii~GH~e~vlSL~~~~~g~llat~ 383 (775)
T KOG0319|consen 332 LGPEESHLAVATNSPELRLYTLPT-------------------------SYCQ---IIPGHTEAVLSLDVWSSGDLLATG 383 (775)
T ss_pred cCCccceEEEEeCCCceEEEecCC-------------------------CceE---EEeCchhheeeeeecccCcEEEEe
Confidence 4554 3444 55568899998877 4444 223 99999999966778999999
Q ss_pred eCCCeEEEEeCCCC----eeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCC----eeEE----EEccCC
Q psy4876 354 TSLGTVQLWDVSAK----KKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRD----HKVA----LLQNHT 418 (609)
Q Consensus 354 s~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~----~~~~----~~~~h~ 418 (609)
+.|.++++|.++.+ .++....+|...|.+++++ ..+|++++.|++|++|++.... .... +...|.
T Consensus 384 sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHd 463 (775)
T KOG0319|consen 384 SKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHD 463 (775)
T ss_pred cCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhc
Confidence 99999999988543 3456678999999999994 5899999999999999998621 1111 334799
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEEC
Q psy4876 419 QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 419 ~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~ 498 (609)
..|++++++|+..+||+||.|.+.+||++... .....+.+|...|.++.|+|.. .+++++ |.|++|+||.+
T Consensus 464 KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~------~l~~vLsGH~RGvw~V~Fs~~d-q~laT~--SgD~TvKIW~i 534 (775)
T KOG0319|consen 464 KDINCVAIAPNDKLIATGSQDKTAKIWDLEQL------RLLGVLSGHTRGVWCVSFSKND-QLLATC--SGDKTVKIWSI 534 (775)
T ss_pred ccccceEecCCCceEEecccccceeeecccCc------eEEEEeeCCccceEEEEecccc-ceeEec--cCCceEEEEEe
Confidence 99999999999999999999999999999976 8899999999999999999976 578887 47999999999
Q ss_pred CCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCC
Q psy4876 499 SSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADET 577 (609)
Q Consensus 499 ~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~ 577 (609)
.+..|++++++| ..|..+.|-.+|+.|++++ .||-|+||++.+.+++..+.+|.++|++++.++++..++||+.||.
T Consensus 535 s~fSClkT~eGH~~aVlra~F~~~~~qliS~~--adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~ 612 (775)
T KOG0319|consen 535 STFSCLKTFEGHTSAVLRASFIRNGKQLISAG--ADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGR 612 (775)
T ss_pred ccceeeeeecCccceeEeeeeeeCCcEEEecc--CCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeE
Confidence 999999999976 5899999999999999954 8999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCc
Q psy4876 578 LRLWKIFEKV 587 (609)
Q Consensus 578 I~iWdl~~~~ 587 (609)
|.+|.=.+.+
T Consensus 613 i~~wkD~Te~ 622 (775)
T KOG0319|consen 613 IIFWKDVTEE 622 (775)
T ss_pred EEEeecCcHH
Confidence 9999755433
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-30 Score=257.84 Aligned_cols=273 Identities=18% Similarity=0.315 Sum_probs=231.2
Q ss_pred eEEEEEecCC-C--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 271 YLNLIDWSHF-N--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 271 ~v~~l~wsp~-~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
.|+++.|.|- + +|+++.|+.|+||++-. ...++.++. |..+|.+++|+.+
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~--------------------------~~~~lrtf~gH~k~Vrd~~~s~~ 269 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD--------------------------DRRCLRTFKGHRKPVRDASFNNC 269 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEEec--------------------------Ccceehhhhcchhhhhhhhcccc
Confidence 4889999994 4 77799999999999875 234666777 9999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
|..+.+++.|+.|++||+++|+++..+. -...++|+.|+ .+.+++|+.|+.|+.||+++++ .++.+..|-+.|..
T Consensus 270 g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i~~ 347 (503)
T KOG0282|consen 270 GTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAILD 347 (503)
T ss_pred CCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhheee
Confidence 9999999999999999999999999987 45678899993 4899999999999999999984 78888889999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA 502 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~ 502 (609)
+.|-++|+++++.+.|+.|+||+.+.. .++... ..+.....++..+|+++.+++= +.|..|.+|.+...-
T Consensus 348 i~F~~~g~rFissSDdks~riWe~~~~------v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ---s~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 348 ITFVDEGRRFISSSDDKSVRIWENRIP------VPIKNIADPEMHTMPCLTLHPNGKWFAAQ---SMDNYIAIFSTVPPF 418 (503)
T ss_pred eEEccCCceEeeeccCccEEEEEcCCC------ccchhhcchhhccCcceecCCCCCeehhh---ccCceEEEEeccccc
Confidence 999999999999999999999999877 333222 2233456789999999755553 589999999875322
Q ss_pred e---eEEEcCC---CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCC-CEEEEEECC
Q psy4876 503 C---LDSIDTK---SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDE-TTVLSAGAD 575 (609)
Q Consensus 503 ~---~~~~~~~---~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~L~s~s~D 575 (609)
. ...++++ +-.+.+.|||||.+|++ |..+|.+.+||..+.+.+..+++|...+..+.|+|.. ..|||++.|
T Consensus 419 r~nkkK~feGh~vaGys~~v~fSpDG~~l~S--GdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~ 496 (503)
T KOG0282|consen 419 RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCS--GDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWD 496 (503)
T ss_pred ccCHhhhhcceeccCceeeEEEcCCCCeEEe--ecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccC
Confidence 1 2233333 46789999999999999 7789999999999999999999999999999999964 489999999
Q ss_pred CCEEEEE
Q psy4876 576 ETLRLWK 582 (609)
Q Consensus 576 g~I~iWd 582 (609)
|.|++|+
T Consensus 497 G~Ikiwd 503 (503)
T KOG0282|consen 497 GLIKIWD 503 (503)
T ss_pred ceeEecC
Confidence 9999996
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=253.03 Aligned_cols=237 Identities=20% Similarity=0.383 Sum_probs=210.3
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~ 413 (609)
....|.|+.+. ...+++|..|.+|+|||..+..+++.+.||.+.|.|+.|+...+++|+.|.+|++||+.++ +++.+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tg-e~l~t 272 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTG-EPLNT 272 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCC-chhhH
Confidence 45689999984 5588999999999999999999999999999999999999999999999999999999998 58889
Q ss_pred EccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeE
Q psy4876 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHI 493 (609)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I 493 (609)
+.+|...|..+.|+ ..++++++.|.+|.+||+..... ....+.+.+|.++|..+.|+. .+++++ +.|++|
T Consensus 273 lihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~---it~rrVLvGHrAaVNvVdfd~---kyIVsA--SgDRTi 342 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTD---ITLRRVLVGHRAAVNVVDFDD---KYIVSA--SGDRTI 342 (499)
T ss_pred HhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchH---HHHHHHHhhhhhheeeecccc---ceEEEe--cCCceE
Confidence 99999999999997 45999999999999999987642 255677889999999999964 367776 369999
Q ss_pred EEEECCCCceeEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEE
Q psy4876 494 YFWNVSSGACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSA 572 (609)
Q Consensus 494 ~iwd~~t~~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~ 572 (609)
++|++.+++++.++.+|. .|.++.+ .++++++ |+.|++|++||+..|.++..+.||++-|.++.| |.+.+++|
T Consensus 343 kvW~~st~efvRtl~gHkRGIAClQY--r~rlvVS--GSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSG 416 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVS--GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG 416 (499)
T ss_pred EEEeccceeeehhhhcccccceehhc--cCeEEEe--cCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeec
Confidence 999999999999998775 6777665 4566666 779999999999999999999999999999999 67899999
Q ss_pred ECCCCEEEEEcCCCccc
Q psy4876 573 GADETLRLWKIFEKVKS 589 (609)
Q Consensus 573 s~Dg~I~iWdl~~~~~~ 589 (609)
+.||+|+|||+..+...
T Consensus 417 aYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 417 AYDGKIKVWDLQAALDP 433 (499)
T ss_pred cccceEEEEecccccCC
Confidence 99999999999987654
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=259.88 Aligned_cols=299 Identities=18% Similarity=0.342 Sum_probs=235.5
Q ss_pred cCCceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEE
Q psy4876 266 IQNDYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAW 343 (609)
Q Consensus 266 ~~~~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~ 343 (609)
..+..++.+++..||+ ++++.....+++|++.+ +.+...+...|.++|.-++|
T Consensus 59 ~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~t-------------------------gk~irswKa~He~Pvi~ma~ 113 (775)
T KOG0319|consen 59 NEDEDEITALALTPDEEVLVTASRSQLLRVWSLPT-------------------------GKLIRSWKAIHEAPVITMAF 113 (775)
T ss_pred ccchhhhheeeecCCccEEEEeeccceEEEEEccc-------------------------chHhHhHhhccCCCeEEEEE
Confidence 3445568889999986 77788899999999999 66555555559999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecC----CEEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 344 IQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT----YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 344 spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~----~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
+|.|..|++|+.||.|+|||+..+.+...|.||.+.|.++.|++ .+|++|..|+.+++||+.....++..+..|.+
T Consensus 114 ~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S 193 (775)
T KOG0319|consen 114 DPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKS 193 (775)
T ss_pred cCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999964 57899999999999999965445666677777
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC-----------------------------------------------
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQH----------------------------------------------- 452 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~----------------------------------------------- 452 (609)
.|++++|++|+..+++++.|..|.|||+.+.+.
T Consensus 194 ~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~ 273 (775)
T KOG0319|consen 194 AVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCV 273 (775)
T ss_pred heeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhh
Confidence 777777777777777777777777776531100
Q ss_pred --------------------------------------------------------------------------------
Q psy4876 453 -------------------------------------------------------------------------------- 452 (609)
Q Consensus 453 -------------------------------------------------------------------------------- 452 (609)
T Consensus 274 ~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~ 353 (775)
T KOG0319|consen 274 YKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTL 353 (775)
T ss_pred hhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEec
Confidence
Q ss_pred --------------------------------------------CCCccceE----------------------------
Q psy4876 453 --------------------------------------------TFSTQPIH---------------------------- 460 (609)
Q Consensus 453 --------------------------------------------~~~~~~~~---------------------------- 460 (609)
.....++.
T Consensus 354 ~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D 433 (775)
T KOG0319|consen 354 PTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQD 433 (775)
T ss_pred CCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCC
Confidence 00000000
Q ss_pred ------------------------eecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCC-CeEE
Q psy4876 461 ------------------------SLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKS-QVCA 515 (609)
Q Consensus 461 ------------------------~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~-~v~s 515 (609)
....|...|++++.+|+. .|+++| +.|++.+||++.....+.++.+|. .|.+
T Consensus 434 ~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~--SqDktaKiW~le~~~l~~vLsGH~RGvw~ 510 (775)
T KOG0319|consen 434 CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND-KLIATG--SQDKTAKIWDLEQLRLLGVLSGHTRGVWC 510 (775)
T ss_pred ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC-ceEEec--ccccceeeecccCceEEEEeeCCccceEE
Confidence 112244444444445533 355554 466667777776666777777765 8999
Q ss_pred EEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 516 LLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 516 l~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
+.|++..+.+++++ .|.+|+||.+.++.++++|.||+..|..+.|-.+|+.|+++++||.|++|++.+.++......
T Consensus 511 V~Fs~~dq~laT~S--gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~ 587 (775)
T KOG0319|consen 511 VSFSKNDQLLATCS--GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA 587 (775)
T ss_pred EEeccccceeEecc--CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh
Confidence 99999999999977 599999999999999999999999999999999999999999999999999999998876544
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=242.01 Aligned_cols=331 Identities=20% Similarity=0.326 Sum_probs=251.7
Q ss_pred hhhhhHHhhhhhhheeeeccCCcchhhhhhccCCCCCCCCCCCCccccCCCccccccCCccCCceeEEEEEecCCCeEEE
Q psy4876 206 QNLFMERIFKSLEYLLFKIKPLPHLMAIKILSNTSKTPMGSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAV 285 (609)
Q Consensus 206 ~~~~~e~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~r~i~~~p~~il~ap~~~~~~~v~~l~wsp~~lla~ 285 (609)
.+..+++.|..+..-.+...++.+++...-++... ........++.|..|..- +..+.+|.+|.-.+.-+|++
T Consensus 49 ~~~~K~~pFDFLi~gelLRtsL~e~l~~kgiSsE~--~leIEYv~~~~aP~pl~~-----~~hdDWVSsv~~~~~~Iltg 121 (423)
T KOG0313|consen 49 NGFWKPVPFDFLIKGELLRTSLDEHLEEKGISSEE--ILEIEYVEAITAPKPLQC-----FLHDDWVSSVKGASKWILTG 121 (423)
T ss_pred CCcCCCCcceEEEcceeeeccHHHHHHHcCcChhh--eeEEEEEEecCCCCcccc-----ccchhhhhhhcccCceEEEe
Confidence 34457777888877777777777775444333210 011111122222222222 22344578888887779999
Q ss_pred EcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC---CEEEEEeCCCeEEE
Q psy4876 286 ALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG---YMLGVGTSLGTVQL 361 (609)
Q Consensus 286 s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg---~~Lasgs~dg~I~i 361 (609)
++||.++|||... +. ...+. |.+.|.+++|.-.. ..|++++.|.++++
T Consensus 122 sYDg~~riWd~~G--------------------------k~--~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L 173 (423)
T KOG0313|consen 122 SYDGTSRIWDLKG--------------------------KS--IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL 173 (423)
T ss_pred ecCCeeEEEecCC--------------------------ce--EEEEecCCcceeeeEEEecCCccceEEEecCCceEEE
Confidence 9999999999874 32 23334 99999999986533 46999999999999
Q ss_pred EeCCCCee----EEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCC------------------------CeeE
Q psy4876 362 WDVSAKKK----CRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSR------------------------DHKV 411 (609)
Q Consensus 362 wd~~~~~~----~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~------------------------~~~~ 411 (609)
|..+.+.. +..-.||...|-+++. ++..+++|+.|.+|.+|+.... ..++
T Consensus 174 w~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 174 WKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred EEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 99887643 3344599999999998 6899999999999999993211 1346
Q ss_pred EEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 412 ALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
..+.+|.++|.++.|++ ...+++++.|.+|+.||+.++ ..+..+.+ ...+.++..+|.. .||++| +.|.
T Consensus 254 vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg------~~~~~~~~-~ksl~~i~~~~~~-~Ll~~g--ssdr 322 (423)
T KOG0313|consen 254 VTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG------GLKSTLTT-NKSLNCISYSPLS-KLLASG--SSDR 322 (423)
T ss_pred EEecccccceeeEEEcC-CCceEeecccceEEEEEeecc------cceeeeec-CcceeEeeccccc-ceeeec--CCCC
Confidence 67889999999999998 668999999999999999998 56666653 5678999999955 688876 4899
Q ss_pred eEEEEECCCCc---eeEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-eEEEEeCCCCCEEEEEEeCCC
Q psy4876 492 HIYFWNVSSGA---CLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV-KVAELHGHSARVLNLAMSPDE 566 (609)
Q Consensus 492 ~I~iwd~~t~~---~~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~-~~~~l~~h~~~V~~l~~spdg 566 (609)
.|++||.+++. ..+++.+ ...|.++.|+|...++++. |+.||++++||+++.. ++..+.+|.+.|.++.|. ++
T Consensus 323 ~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S-~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~ 400 (423)
T KOG0313|consen 323 HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS-GSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EG 400 (423)
T ss_pred ceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEE-EecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CC
Confidence 99999999764 2344444 4589999999998887765 6689999999999877 999999999999999997 56
Q ss_pred CEEEEEECCCCEEEEEcC
Q psy4876 567 TTVLSAGADETLRLWKIF 584 (609)
Q Consensus 567 ~~L~s~s~Dg~I~iWdl~ 584 (609)
..|++||.|.+|+|+.-.
T Consensus 401 ~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 401 GLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ceEEeccCcceEEEeccc
Confidence 689999999999998754
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-29 Score=256.63 Aligned_cols=247 Identities=20% Similarity=0.325 Sum_probs=229.5
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
+.+.|.+|.++|....++++-.+|.|.||+.++...++.+.....+|.+..| ..+.+++|+.|..|+||+..+. ..+
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~-ekV 90 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG-EKV 90 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc-eee
Confidence 7789999999999999999999999999999999999999999999999999 5689999999999999999998 589
Q ss_pred EEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 412 ALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
..+..|.+.|.+|+.+|...++++++.|-+|++||.+.. ..+.+++++|...|.+++|.|...+.++++ +.|+
T Consensus 91 ~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~-----wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~--sLDr 163 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-----WACEQTFEGHEHYVMQVAFNPKDPNTFASA--SLDR 163 (794)
T ss_pred EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc-----eeeeeEEcCcceEEEEEEecCCCccceeee--eccc
Confidence 999999999999999999999999999999999999876 378899999999999999999999999998 5999
Q ss_pred eEEEEECCCCceeEEEcCCC-CeEEEEEcCCC--CeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCE
Q psy4876 492 HIYFWNVSSGACLDSIDTKS-QVCALLWNSDY--KELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETT 568 (609)
Q Consensus 492 ~I~iwd~~t~~~~~~~~~~~-~v~sl~~s~~g--~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~ 568 (609)
+|++|.+.+..+..++++|. .|.++.|-+.| .+|++ |.+|..|+|||+.+..++.++.||...|..++|+|.-.+
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIs--gaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLIS--GADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPI 241 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEe--cCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcE
Confidence 99999999999999998775 89999998877 46666 779999999999999999999999999999999999999
Q ss_pred EEEEECCCCEEEEEcCCCccch
Q psy4876 569 VLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 569 L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
++||+.||+||||+-.+=..++
T Consensus 242 iisgsEDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTYKLEK 263 (794)
T ss_pred EEEecCCccEEEecCcceehhh
Confidence 9999999999999977655443
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=257.83 Aligned_cols=280 Identities=21% Similarity=0.347 Sum_probs=243.5
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
+-.|..+++|.++ +++.+.++.|.||+..+ . +++.++. .+.+.+..|.|.+
T Consensus 373 R~dVRsl~vS~d~~~~~Sga~~SikiWn~~t-------------------------~--kciRTi~-~~y~l~~~Fvpgd 424 (888)
T KOG0306|consen 373 RSDVRSLCVSSDSILLASGAGESIKIWNRDT-------------------------L--KCIRTIT-CGYILASKFVPGD 424 (888)
T ss_pred hhheeEEEeecCceeeeecCCCcEEEEEccC-------------------------c--ceeEEec-cccEEEEEecCCC
Confidence 3448899999998 55677789999999987 3 3555553 4599999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCC----e--eEEEE-----
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRD----H--KVALL----- 414 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~----~--~~~~~----- 414 (609)
+++++|..+|.+.|||+.+...+.+++.|.+.|+.++. ++..+++|+.|.+|++||+.-.. . .+..+
T Consensus 425 ~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt 504 (888)
T KOG0306|consen 425 RYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT 504 (888)
T ss_pred ceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE
Confidence 99999999999999999999999999999999999998 68899999999999999975211 0 11111
Q ss_pred ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEE
Q psy4876 415 QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIY 494 (609)
Q Consensus 415 ~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~ 494 (609)
-.-...|.|+.+||||++||++--|++|+||-+++. +....+-+|.-+|.|+..+||+ .++++| +.|+.|+
T Consensus 505 Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl------KFflsLYGHkLPV~smDIS~DS-klivTg--SADKnVK 575 (888)
T KOG0306|consen 505 LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL------KFFLSLYGHKLPVLSMDISPDS-KLIVTG--SADKNVK 575 (888)
T ss_pred EeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce------eeeeeecccccceeEEeccCCc-CeEEec--cCCCceE
Confidence 123578999999999999999999999999999988 7778889999999999999998 577887 4999999
Q ss_pred EEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEE
Q psy4876 495 FWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAG 573 (609)
Q Consensus 495 iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s 573 (609)
+|-+.-|.|-+++-.| ..|.++.|.|....+++++ .|+.|+-||-...+.+..+.+|...|+|++.+|+|.++++++
T Consensus 576 iWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~g--KD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 576 IWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCG--KDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS 653 (888)
T ss_pred EeccccchhhhhhhcccCceeEEEEcccceeEEEec--CcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEecc
Confidence 9999999999988765 5899999999887777753 899999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEcCCCc
Q psy4876 574 ADETLRLWKIFEKV 587 (609)
Q Consensus 574 ~Dg~I~iWdl~~~~ 587 (609)
.|.+||+|.-....
T Consensus 654 hD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 654 HDKSIRLWERTDEI 667 (888)
T ss_pred CCceeEeeeccCcc
Confidence 99999999977633
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-29 Score=244.77 Aligned_cols=294 Identities=18% Similarity=0.246 Sum_probs=236.9
Q ss_pred cccCCCccccccCCccCCceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceee
Q psy4876 251 RYIPLTADRILDAPEIQNDYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDH 328 (609)
Q Consensus 251 r~i~~~p~~il~ap~~~~~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (609)
+-+|.....++..+ .-.|.-+.||++| +++++.|.+..||.+... ..++.
T Consensus 210 ~qip~qt~qil~~h----tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d------------------------~~~kl 261 (519)
T KOG0293|consen 210 LQIPSQTWQILQDH----TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD------------------------VHFKL 261 (519)
T ss_pred ccCCchhhhhHhhC----CCcEEEEEEcCCCeeEeeccCCceEEEEEEecC------------------------cceee
Confidence 33455555555543 2246779999997 666888999999998762 44566
Q ss_pred eeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecC-CCCceEEEEe--cCCEEEEEecCCeEEEEEc
Q psy4876 329 LMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDG-HDVRVGALAW--NTYILSSGSRCGNIVHHDV 404 (609)
Q Consensus 329 l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~ 404 (609)
..++. |..+|..+.||||.++|++|+.+..+.+||+.+|.+...+.. |...+.+++| ++..+++|+.|++|..||+
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl 341 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL 341 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecC
Confidence 67777 999999999999999999999999999999999998887763 4688999999 7889999999999999999
Q ss_pred CCCCeeEEEEccCC-CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEE
Q psy4876 405 RSRDHKVALLQNHT-QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 405 ~~~~~~~~~~~~h~-~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla 483 (609)
+.. ......+-. ..|.+++..+||+++++.+.|..|++++.++. ..+. +.....+|++++.+.++...++
T Consensus 342 Dgn--~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~------~dr~-lise~~~its~~iS~d~k~~Lv 412 (519)
T KOG0293|consen 342 DGN--ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR------VDRG-LISEEQPITSFSISKDGKLALV 412 (519)
T ss_pred Ccc--hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhh------hhhc-cccccCceeEEEEcCCCcEEEE
Confidence 864 343443332 56999999999999999999999999998865 2222 3334568999999999977776
Q ss_pred EEeccCCCeEEEEECCCCceeEEEcCCC---CeEEEEEcCC-CCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEE
Q psy4876 484 SGGGTADRHIYFWNVSSGACLDSIDTKS---QVCALLWNSD-YKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLN 559 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t~~~~~~~~~~~---~v~sl~~s~~-g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~ 559 (609)
.- .+..|++||+.....+..+.++. -+..-+|.-. ..++++ |++|++|+||+..+++.+.++.||...|++
T Consensus 413 nL---~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS--GSED~kvyIWhr~sgkll~~LsGHs~~vNc 487 (519)
T KOG0293|consen 413 NL---QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIAS--GSEDSKVYIWHRISGKLLAVLSGHSKTVNC 487 (519)
T ss_pred Ec---ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEe--cCCCceEEEEEccCCceeEeecCCcceeeE
Confidence 54 79999999999888887776654 2444455443 355555 789999999999999999999999999999
Q ss_pred EEEeCC-CCEEEEEECCCCEEEEEcCCC
Q psy4876 560 LAMSPD-ETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 560 l~~spd-g~~L~s~s~Dg~I~iWdl~~~ 586 (609)
++|+|. -..+|+||.||+||||.....
T Consensus 488 VswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 488 VSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999995 458899999999999988654
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-28 Score=263.05 Aligned_cols=280 Identities=23% Similarity=0.338 Sum_probs=246.0
Q ss_pred ceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 269 DYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 269 ~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
+..+.+..|+.+.+++++.+.+|.+|+..+ +... ...+. |.+.|.++++...+
T Consensus 208 ~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~-------------------------~~~i-~~~l~GH~g~V~~l~~~~~~ 261 (537)
T KOG0274|consen 208 DHVVLCLQLHDGFFKSGSDDSTLHLWDLNN-------------------------GYLI-LTRLVGHFGGVWGLAFPSGG 261 (537)
T ss_pred cchhhhheeecCeEEecCCCceeEEeeccc-------------------------ceEE-EeeccCCCCCceeEEEecCC
Confidence 455778888877788999999999999987 4332 23355 99999999998878
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEc
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWS 427 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 427 (609)
.+|++|+.|.+++|||+.+|++...+.+|...|.++...+..+++|+.|.+|++|++.++ ..+..+.+|...|.++..+
T Consensus 262 ~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~-~~l~l~~~h~~~V~~v~~~ 340 (537)
T KOG0274|consen 262 DKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNG-ACLNLLRGHTGPVNCVQLD 340 (537)
T ss_pred CEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCc-ceEEEeccccccEEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999987 5888888899999999998
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC-ceeEE
Q psy4876 428 PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG-ACLDS 506 (609)
Q Consensus 428 pdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~-~~~~~ 506 (609)
+.++++|+.|++|.+||+.++ ++++.+.+|...|.++.+... ..+++| +.|+.|++||+++. +|+.+
T Consensus 341 --~~~lvsgs~d~~v~VW~~~~~------~cl~sl~gH~~~V~sl~~~~~--~~~~Sg--s~D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 341 --EPLLVSGSYDGTVKVWDPRTG------KCLKSLSGHTGRVYSLIVDSE--NRLLSG--SLDTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred --CCEEEEEecCceEEEEEhhhc------eeeeeecCCcceEEEEEecCc--ceEEee--eeccceEeecCCchhhhhhh
Confidence 789999999999999999988 899999999999999988764 567776 48999999999999 99999
Q ss_pred EcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC-CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 507 IDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG-HSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 507 ~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
+.++..+. -.....++.|++ +..|++|++||..+++++..+.+ |...|..+++. ...+++++.||++++||+..
T Consensus 409 l~~h~~~v-~~l~~~~~~Lvs--~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 409 LQGHTSLV-SSLLLRDNFLVS--SSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred hcCCcccc-cccccccceeEe--ccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 98887554 333445677777 55899999999999999999998 67889998886 56899999999999999999
Q ss_pred Cccchhh
Q psy4876 586 KVKSKKK 592 (609)
Q Consensus 586 ~~~~~k~ 592 (609)
+......
T Consensus 484 ~~~~~~l 490 (537)
T KOG0274|consen 484 GTLIRTL 490 (537)
T ss_pred Cchhhhh
Confidence 8887755
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-27 Score=238.57 Aligned_cols=246 Identities=27% Similarity=0.492 Sum_probs=218.5
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
|.+.|++++|+|++++|++++.||.|.+|++.+++....+..|...+..+.|. +..|++++.+|.|.+||+... ...
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-~~~ 86 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-ECV 86 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc-cce
Confidence 88999999999999999999999999999999988888899999999999994 568999999999999999975 466
Q ss_pred EEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 412 ALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
..+..|...|.++.|++++.++++++.|+.|.+||+.++ +....+..|...|.+++|+|++ .+++++ +.|+
T Consensus 87 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~--~~~~ 157 (289)
T cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG------KCLTTLRGHTDWVNSVAFSPDG-TFVASS--SQDG 157 (289)
T ss_pred EEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc------EEEEEeccCCCcEEEEEEcCcC-CEEEEE--cCCC
Confidence 777889999999999999999999888999999999976 6777788899999999999985 566665 3699
Q ss_pred eEEEEECCCCceeEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEE
Q psy4876 492 HIYFWNVSSGACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVL 570 (609)
Q Consensus 492 ~I~iwd~~t~~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~ 570 (609)
.|++||+++++.+..+..+. .+.++.|+++++.+++++ .++.|++||+..+..+..+..|...|.+++|+|++.+++
T Consensus 158 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 235 (289)
T cd00200 158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS--SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLA 235 (289)
T ss_pred cEEEEEccccccceeEecCccccceEEECCCcCEEEEec--CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEE
Confidence 99999999988888887665 899999999999988854 599999999999999988888999999999999999999
Q ss_pred EEECCCCEEEEEcCCCccchh
Q psy4876 571 SAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 571 s~s~Dg~I~iWdl~~~~~~~k 591 (609)
+++.||.|++|++........
T Consensus 236 ~~~~~~~i~i~~~~~~~~~~~ 256 (289)
T cd00200 236 SGSEDGTIRVWDLRTGECVQT 256 (289)
T ss_pred EEcCCCcEEEEEcCCceeEEE
Confidence 888899999999987554433
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-29 Score=233.04 Aligned_cols=278 Identities=18% Similarity=0.278 Sum_probs=246.4
Q ss_pred eEEEEEecC---CC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEc
Q psy4876 271 YLNLIDWSH---FN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWI 344 (609)
Q Consensus 271 ~v~~l~wsp---~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~s 344 (609)
.|-.|+||| +| +++++.|+.-.+-+-++ +.. +-+++ |.+.|.+....
T Consensus 16 pvvdl~~s~itp~g~flisa~kd~~pmlr~g~t-------------------------gdw--igtfeghkgavw~~~l~ 68 (334)
T KOG0278|consen 16 PVVDLAFSPITPDGYFLISASKDGKPMLRNGDT-------------------------GDW--IGTFEGHKGAVWSATLN 68 (334)
T ss_pred ceeEEeccCCCCCceEEEEeccCCCchhccCCC-------------------------CCc--EEeeeccCcceeeeecC
Confidence 356688876 56 67788899888888777 554 45666 99999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
.+-..-|+++.|-+-+|||.-+|..+..+. |...|..++| +.++|++|+.+..++|||+...+.+...+.+|.+.|.
T Consensus 69 ~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir 147 (334)
T KOG0278|consen 69 KNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIR 147 (334)
T ss_pred chhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcce
Confidence 998899999999999999999999999987 9999999999 5789999999999999999988888888999999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc
Q psy4876 423 GLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA 502 (609)
Q Consensus 423 ~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~ 502 (609)
.+-|....+.|++.+.|++|++||.+++ ..++.+. -..+|+++..+++|. ++.++ ..+.|.+||..+-.
T Consensus 148 ~v~wc~eD~~iLSSadd~tVRLWD~rTg------t~v~sL~-~~s~VtSlEvs~dG~-ilTia---~gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 148 TVLWCHEDKCILSSADDKTVRLWDHRTG------TEVQSLE-FNSPVTSLEVSQDGR-ILTIA---YGSSVKFWDAKSFG 216 (334)
T ss_pred eEEEeccCceEEeeccCCceEEEEeccC------cEEEEEe-cCCCCcceeeccCCC-EEEEe---cCceeEEecccccc
Confidence 9999998889999999999999999999 6666665 467899999999995 55554 57899999999999
Q ss_pred eeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEE-eCCCCCEEEEEEeCCCCEEEEEECCCCEEEE
Q psy4876 503 CLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL-HGHSARVLNLAMSPDETTVLSAGADETLRLW 581 (609)
Q Consensus 503 ~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iW 581 (609)
.++.++....|.+...+|+...+++ |..|..++.||+.+++.+..+ ++|.++|.|+.|+|||...++|+.||+||||
T Consensus 217 ~lKs~k~P~nV~SASL~P~k~~fVa--Gged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 217 LLKSYKMPCNVESASLHPKKEFFVA--GGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred ceeeccCccccccccccCCCceEEe--cCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence 9999999999999999999966666 679999999999999999886 8999999999999999999999999999999
Q ss_pred EcCCCccc
Q psy4876 582 KIFEKVKS 589 (609)
Q Consensus 582 dl~~~~~~ 589 (609)
....++..
T Consensus 295 Qt~~~~~~ 302 (334)
T KOG0278|consen 295 QTTPGKTY 302 (334)
T ss_pred EecCCCch
Confidence 98876654
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-28 Score=258.05 Aligned_cols=284 Identities=19% Similarity=0.307 Sum_probs=241.1
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
.|..|+|+|.. +|++-..|.|.+||... +. .+.++. |+++|..++|+|.+
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM-------------------------~t--li~rFdeHdGpVRgv~FH~~q 63 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRM-------------------------GT--LIDRFDEHDGPVRGVDFHPTQ 63 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhh-------------------------hh--HHhhhhccCCccceeeecCCC
Confidence 46779999987 77777799999999976 33 555666 99999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecC--CEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT--YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~--~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
.++++|+.|-.|+||+..+.+++.++.+|-.-|..+.|+. -++++++.|.+|+||+..++ .++..+.+|...|.|..
T Consensus 64 plFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr-~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 64 PLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR-KCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred CeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC-ceEEEEecCceEEEeec
Confidence 9999999999999999999999999999999999999964 68999999999999999997 58999999999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCCCC--------------------C---CccceEeecCCcccEEEEEEcCCCCcEE
Q psy4876 426 WSPDGRYLASGGNDNLLNIWSGVPGQHT--------------------F---STQPIHSLSRHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 426 ~spdg~~lasgs~Dg~I~iwd~~~~~~~--------------------~---~~~~~~~~~~h~~~V~~l~~sp~~~~ll 482 (609)
|+|....+++++-|.+|+|||+...... . .....+.+.+|...|.-++|+|.-+ ++
T Consensus 143 FhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-li 221 (1202)
T KOG0292|consen 143 FHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LI 221 (1202)
T ss_pred cCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eE
Confidence 9999999999999999999998642110 0 1122356789999999999999764 77
Q ss_pred EEEeccCCCeEEEEECCCCce--eEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEE
Q psy4876 483 ASGGGTADRHIYFWNVSSGAC--LDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLN 559 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~~--~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~ 559 (609)
++|+ +|+.|++|.+...+. +.+..+| ..|.++.|+|....+++. ++|++|+|||+...+.+..++...++.+.
T Consensus 222 VSG~--DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSn--sEDksirVwDm~kRt~v~tfrrendRFW~ 297 (1202)
T KOG0292|consen 222 VSGA--DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSN--SEDKSIRVWDMTKRTSVQTFRRENDRFWI 297 (1202)
T ss_pred EecC--CcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEec--CCCccEEEEecccccceeeeeccCCeEEE
Confidence 7774 999999999875442 3333344 589999999999999984 49999999999999999999888899999
Q ss_pred EEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 560 LAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 560 l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
++-+|..++++ ++.|+-+.||.+....+
T Consensus 298 laahP~lNLfA-AgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 298 LAAHPELNLFA-AGHDSGMIVFKLERERP 325 (1202)
T ss_pred EEecCCcceee-eecCCceEEEEEcccCc
Confidence 99999998655 55777888888875443
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-28 Score=222.27 Aligned_cols=271 Identities=18% Similarity=0.259 Sum_probs=231.3
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
+-.|+.+.|+-+| .++++.|.+|++|+... +. .+.++. |...|..++.+.
T Consensus 17 qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r-------------------------g~--liktYsghG~EVlD~~~s~ 69 (307)
T KOG0316|consen 17 QGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-------------------------GA--LIKTYSGHGHEVLDAALSS 69 (307)
T ss_pred ccceEEEEEccCCCEEEEcCCCceEEeecccc-------------------------cc--eeeeecCCCceeeeccccc
Confidence 3458899999986 88899999999999976 44 556666 999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCC-eeEEEEccCCCCeE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRD-HKVALLQNHTQEVC 422 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~ 422 (609)
|...+++|+.|..|.+||+.+|+.++.+.+|.+.|..+.|| ...+++|+.|..+++||.+... ++++.+......|.
T Consensus 70 Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~ 149 (307)
T KOG0316|consen 70 DNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVS 149 (307)
T ss_pred cccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCcee
Confidence 99999999999999999999999999999999999999996 5899999999999999998764 56788888889999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc
Q psy4876 423 GLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA 502 (609)
Q Consensus 423 ~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~ 502 (609)
++... +..|++|+.||+++.||++.| .....+ ...+|++++|+++++..|++. .|++|++.|-.+|+
T Consensus 150 Si~v~--~heIvaGS~DGtvRtydiR~G------~l~sDy--~g~pit~vs~s~d~nc~La~~---l~stlrLlDk~tGk 216 (307)
T KOG0316|consen 150 SIDVA--EHEIVAGSVDGTVRTYDIRKG------TLSSDY--FGHPITSVSFSKDGNCSLASS---LDSTLRLLDKETGK 216 (307)
T ss_pred EEEec--ccEEEeeccCCcEEEEEeecc------eeehhh--cCCcceeEEecCCCCEEEEee---ccceeeecccchhH
Confidence 99886 567999999999999999988 333333 345799999999998888764 89999999999999
Q ss_pred eeEEEcCCC---CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCC-EEEEEEeCCCCEEEEEECCCCE
Q psy4876 503 CLDSIDTKS---QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSAR-VLNLAMSPDETTVLSAGADETL 578 (609)
Q Consensus 503 ~~~~~~~~~---~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~L~s~s~Dg~I 578 (609)
.+..+.++. --..++++.....+++ |++||.|++||+.....+..+..|... |.+++++|.-..++++.. +.+
T Consensus 217 lL~sYkGhkn~eykldc~l~qsdthV~s--gSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~ 293 (307)
T KOG0316|consen 217 LLKSYKGHKNMEYKLDCCLNQSDTHVFS--GSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGD 293 (307)
T ss_pred HHHHhcccccceeeeeeeecccceeEEe--ccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cce
Confidence 999887764 2345566666666666 779999999999999999999888777 899999998887877754 456
Q ss_pred EEEE
Q psy4876 579 RLWK 582 (609)
Q Consensus 579 ~iWd 582 (609)
.+|.
T Consensus 294 ~~~~ 297 (307)
T KOG0316|consen 294 LFWY 297 (307)
T ss_pred ecee
Confidence 6664
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-28 Score=224.36 Aligned_cols=254 Identities=17% Similarity=0.267 Sum_probs=224.7
Q ss_pred eeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEc
Q psy4876 328 HLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDV 404 (609)
Q Consensus 328 ~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~ 404 (609)
.+..+. +.+.|..+.|+-+|+|.++++.|.+|++|+...+.+++++.+|...|..++. +...|++|+.|..|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 344455 8899999999999999999999999999999999999999999999998876 7889999999999999999
Q ss_pred CCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 405 RSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 405 ~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
.++ +....+.+|.+.|+.++|+.+...+++|+.|..+++||.++... +|++.+......|.++.... ..+++
T Consensus 89 ~TG-kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~----ePiQildea~D~V~Si~v~~---heIva 160 (307)
T KOG0316|consen 89 NTG-KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF----EPIQILDEAKDGVSSIDVAE---HEIVA 160 (307)
T ss_pred ccC-eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC----CccchhhhhcCceeEEEecc---cEEEe
Confidence 998 58899999999999999999999999999999999999997643 78999988889999999864 45666
Q ss_pred EeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCC--EEEEEE
Q psy4876 485 GGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSAR--VLNLAM 562 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~--V~~l~~ 562 (609)
| +.||+++.||++.|...... ...+|+++.|+++++..++ |.-+++|++.|-.+|+.+..++||... =.++++
T Consensus 161 G--S~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La--~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l 235 (307)
T KOG0316|consen 161 G--SVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLA--SSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCL 235 (307)
T ss_pred e--ccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEE--eeccceeeecccchhHHHHHhcccccceeeeeeee
Confidence 5 69999999999998764332 4568999999999999998 558999999999999999999999754 456778
Q ss_pred eCCCCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 563 SPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 563 spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
+.....+++|++||.|.+||+.+.....+...
T Consensus 236 ~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 236 NQSDTHVFSGSEDGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred cccceeEEeccCCceEEEEEeccceeeeeecc
Confidence 88888999999999999999998877665544
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=236.49 Aligned_cols=285 Identities=17% Similarity=0.292 Sum_probs=242.6
Q ss_pred CCceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEE
Q psy4876 267 QNDYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAW 343 (609)
Q Consensus 267 ~~~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~ 343 (609)
....++.|-.||||+ +++++-||-|.+||..+++-.+ +-+.+..-.+- +++.|.|+.|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrK-------------------DLkYQAqd~fMMmd~aVlci~F 271 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRK-------------------DLKYQAQDNFMMMDDAVLCISF 271 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhh-------------------hhhhhhhcceeecccceEEEee
Confidence 334568889999997 7778899999999998832110 01111111222 6889999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCCCeeEEEec-CCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCC
Q psy4876 344 IQEGYMLGVGTSLGTVQLWDVSAKKKCRTMD-GHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQE 420 (609)
Q Consensus 344 spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~ 420 (609)
+.|...||+|+.||.|+||.+.+|.+++.+. .|...|+|+.| ++..+++++.|.+++++-+..+ ..+..+++|.+.
T Consensus 272 SRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG-K~LKEfrGHsSy 350 (508)
T KOG0275|consen 272 SRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG-KCLKEFRGHSSY 350 (508)
T ss_pred cccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc-hhHHHhcCcccc
Confidence 9999999999999999999999999999997 89999999999 6788999999999999999987 588899999999
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC--CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEEC
Q psy4876 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR--HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~ 498 (609)
|+...|.+||.++++++.||+|++|+..+. +++.++.. ...+|..+..-|..+.-++++. ..++|+|-++
T Consensus 351 vn~a~ft~dG~~iisaSsDgtvkvW~~Ktt------eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN--rsntv~imn~ 422 (508)
T KOG0275|consen 351 VNEATFTDDGHHIISASSDGTVKVWHGKTT------ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN--RSNTVYIMNM 422 (508)
T ss_pred ccceEEcCCCCeEEEecCCccEEEecCcch------hhhhhccCCCCcccceeEEEcCCCCceEEEEc--CCCeEEEEec
Confidence 999999999999999999999999999988 55555543 4567888888887776666663 7899999998
Q ss_pred CCCceeEEEcC----CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEEC
Q psy4876 499 SSGACLDSIDT----KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGA 574 (609)
Q Consensus 499 ~t~~~~~~~~~----~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~ 574 (609)
. |+.++++.. ++...+.+.+|.|.+++++. +|+.++.|.+.+|..-..+.-|+..|..++-+|..+.|++-+.
T Consensus 423 q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcig--ED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsE 499 (508)
T KOG0275|consen 423 Q-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIG--EDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSE 499 (508)
T ss_pred c-ceEEeeeccCCccCCceEEEEecCCCcEEEEEc--cCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcc
Confidence 5 778888853 34677888999999999864 8999999999999999999999999999999999999999999
Q ss_pred CCCEEEEE
Q psy4876 575 DETLRLWK 582 (609)
Q Consensus 575 Dg~I~iWd 582 (609)
||.+++|.
T Consensus 500 DgllKLWk 507 (508)
T KOG0275|consen 500 DGLLKLWK 507 (508)
T ss_pred cchhhhcC
Confidence 99999995
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=218.02 Aligned_cols=247 Identities=26% Similarity=0.416 Sum_probs=209.6
Q ss_pred eeeeeeec-CCCCeEEEEEccC-CCEEEEEeCCCeEEEEeCCCC---eeEEEe-cCCCCceEEEEe--cCCEEEEEecCC
Q psy4876 326 IDHLMDLE-GNENVCSVAWIQE-GYMLGVGTSLGTVQLWDVSAK---KKCRTM-DGHDVRVGALAW--NTYILSSGSRCG 397 (609)
Q Consensus 326 ~~~l~~~~-h~~~V~~v~~spd-g~~Lasgs~dg~I~iwd~~~~---~~~~~l-~~h~~~V~~l~~--~~~~L~sgs~dg 397 (609)
+..+..+. |.+.|..++|+|. |..||+|+.|..|+||+...+ .+...+ .+|...|.+++| +|++|++++.|+
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 34455566 8889999999998 899999999999999999853 344444 369999999999 689999999999
Q ss_pred eEEEEEcCCCC-eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcC
Q psy4876 398 NIVHHDVRSRD-HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476 (609)
Q Consensus 398 ~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 476 (609)
++.||.-..++ +.+..+.+|..+|.+++|+++|++||+++.|..|.||.+..+. ...++..++.|...|+.+.|+|
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd---Efec~aVL~~HtqDVK~V~WHP 160 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD---EFECIAVLQEHTQDVKHVIWHP 160 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC---cEEEEeeeccccccccEEEEcC
Confidence 99999776544 5688899999999999999999999999999999999998553 3478889999999999999999
Q ss_pred CCCcEEEEEeccCCCeEEEEECC---CCceeEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC
Q psy4876 477 WSPNVLASGGGTADRHIYFWNVS---SGACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 477 ~~~~llasggGs~Dg~I~iwd~~---t~~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~ 552 (609)
.. .||+++ +.|.+|++|+-. ...++.++..+. .|.+++|++.|..|++++ +|++|+||.+.+.-. ..
T Consensus 161 t~-dlL~S~--SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s--dD~tv~Iw~~~~~~~----~~ 231 (312)
T KOG0645|consen 161 TE-DLLFSC--SYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS--DDGTVSIWRLYTDLS----GM 231 (312)
T ss_pred Cc-ceeEEe--ccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec--CCcceEeeeeccCcc----hh
Confidence 65 588887 499999999876 346888898775 999999999999999955 899999999652211 24
Q ss_pred CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 553 HSARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 553 h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
|...+..+.|. ...|++++.|+.|++|.-...
T Consensus 232 ~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~ 263 (312)
T KOG0645|consen 232 HSRALYDVPWD--NGVIASGGGDDAIRLFKESDS 263 (312)
T ss_pred cccceEeeeec--ccceEeccCCCEEEEEEecCC
Confidence 77889999997 558999999999999988753
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-26 Score=245.42 Aligned_cols=290 Identities=18% Similarity=0.256 Sum_probs=217.2
Q ss_pred EEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceee-eeeec-CCCCeEEEEEcc-CCC
Q psy4876 272 LNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDH-LMDLE-GNENVCSVAWIQ-EGY 348 (609)
Q Consensus 272 v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~-h~~~V~~v~~sp-dg~ 348 (609)
+...+|...++++++.+.....|+...+. .++-.. +.++... ...+. |.+.|.+++|+| +++
T Consensus 25 ~~~~~~d~~~~~~~n~~~~a~~w~~~gg~---~v~~~~------------~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~ 89 (493)
T PTZ00421 25 PSTALWDCSNTIACNDRFIAVPWQQLGST---AVLKHT------------DYGKLASNPPILLGQEGPIIDVAFNPFDPQ 89 (493)
T ss_pred cccccCCCCCcEeECCceEEEEEecCCce---EEeecc------------ccccCCCCCceEeCCCCCEEEEEEcCCCCC
Confidence 33445655568888888888888765520 000000 0021111 11233 899999999999 889
Q ss_pred EEEEEeCCCeEEEEeCCCC-------eeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCC
Q psy4876 349 MLGVGTSLGTVQLWDVSAK-------KKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHT 418 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~-------~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 418 (609)
+||+|+.||.|+|||+.++ ..+..+.+|...|.+++|+ +++|++|+.|+.|++||+.++ ..+..+.+|.
T Consensus 90 ~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-~~~~~l~~h~ 168 (493)
T PTZ00421 90 KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-KAVEVIKCHS 168 (493)
T ss_pred EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC-eEEEEEcCCC
Confidence 9999999999999999765 3567889999999999995 368999999999999999987 4677888999
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCccc-EEEEEEcCCCCcEEEEEe-ccCCCeEEEE
Q psy4876 419 QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAA-VKAIAWCPWSPNVLASGG-GTADRHIYFW 496 (609)
Q Consensus 419 ~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp~~~~llasgg-Gs~Dg~I~iw 496 (609)
..|.+++|+|+|.+|++|+.|+.|+|||++++ ..+..+.+|.+. +..+.|++++..++++|. ++.|+.|++|
T Consensus 169 ~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg------~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklW 242 (493)
T PTZ00421 169 DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG------TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLW 242 (493)
T ss_pred CceEEEEEECCCCEEEEecCCCEEEEEECCCC------cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEE
Confidence 99999999999999999999999999999988 677788888765 457789998766666552 2468999999
Q ss_pred ECCCCc-eeEEEcC--CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC-CCCCEEEEEEeCCCCEEEEE
Q psy4876 497 NVSSGA-CLDSIDT--KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG-HSARVLNLAMSPDETTVLSA 572 (609)
Q Consensus 497 d~~t~~-~~~~~~~--~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~s~ 572 (609)
|+++.. ++..... ...+....|++++..++++ |..|+.|++||+.+++.+..+.. +..++..++|.|.-. +-.
T Consensus 243 Dlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lg-gkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~--~dv 319 (493)
T PTZ00421 243 DTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIG-SKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWS--LDT 319 (493)
T ss_pred eCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEE-EeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccc--ccc
Confidence 998754 4443332 3456677899999988875 33599999999999887776543 456788999988532 222
Q ss_pred ECCCCEEEEEcCCC
Q psy4876 573 GADETLRLWKIFEK 586 (609)
Q Consensus 573 s~Dg~I~iWdl~~~ 586 (609)
..-...|+|.+...
T Consensus 320 ~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 320 RKCEIARFYALTYH 333 (493)
T ss_pred cceeeeEEEEecCC
Confidence 23345677877543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-26 Score=266.23 Aligned_cols=239 Identities=18% Similarity=0.333 Sum_probs=201.0
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC----e----eEEEecCCCCceEEEEec---CCEEEEEecCCeEEEE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAK----K----KCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHH 402 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~----~----~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iw 402 (609)
|.+.|++++|+|+|++||+|+.||.|+|||+... . ....+. +...|.+++|+ +.+|++++.||+|++|
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 7899999999999999999999999999997542 1 122333 34678999994 5799999999999999
Q ss_pred EcCCCCeeEEEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcE
Q psy4876 403 DVRSRDHKVALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 403 d~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 481 (609)
|+.++ ..+..+.+|...|.+++|+| ++.+|++|+.|+.|++||++++ ..+..+..+ ..|.++.|++....+
T Consensus 561 d~~~~-~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~------~~~~~~~~~-~~v~~v~~~~~~g~~ 632 (793)
T PLN00181 561 DVARS-QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG------VSIGTIKTK-ANICCVQFPSESGRS 632 (793)
T ss_pred ECCCC-eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC------cEEEEEecC-CCeEEEEEeCCCCCE
Confidence 99886 57788899999999999997 7899999999999999999987 566666544 678999997655577
Q ss_pred EEEEeccCCCeEEEEECCCCc-eeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC------CceEEEEeCC
Q psy4876 482 LASGGGTADRHIYFWNVSSGA-CLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS------LVKVAELHGH 553 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t~~-~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~------~~~~~~l~~h 553 (609)
+++|+ .|+.|++||++++. .+..+..+ ..|.++.|. ++.+++++ +.|+.|+|||+.. ...+..+.+|
T Consensus 633 latgs--~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~--s~D~~ikiWd~~~~~~~~~~~~l~~~~gh 707 (793)
T PLN00181 633 LAFGS--ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSS--STDNTLKLWDLSMSISGINETPLHSFMGH 707 (793)
T ss_pred EEEEe--CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEE--ECCCEEEEEeCCCCccccCCcceEEEcCC
Confidence 88874 89999999998765 45555544 589999997 67788874 4799999999974 3567889999
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 554 SARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 554 ~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
...+..++|++++.+|++|+.|+.|++|+....
T Consensus 708 ~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 708 TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 999999999999999999999999999997654
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-27 Score=237.01 Aligned_cols=276 Identities=22% Similarity=0.314 Sum_probs=232.1
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
.|.+|+|||.. -+|++..-.|.||+..+ ... ...+. ....|+++.|..||
T Consensus 28 ~vssl~fsp~~P~d~aVt~S~rvqly~~~~-------------------------~~~--~k~~srFk~~v~s~~fR~DG 80 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYDFAVTSSVRVQLYSSVT-------------------------RSV--RKTFSRFKDVVYSVDFRSDG 80 (487)
T ss_pred cceeEecCCCCCCceEEecccEEEEEecch-------------------------hhh--hhhHHhhccceeEEEeecCC
Confidence 48889999963 66777788899999876 222 22222 56889999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe---cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGL 424 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 424 (609)
++||+|...|.|+|||..+...++.+.+|+.+|..+.| ++..|++|+.|+.+++||+.+.. ....+.+|++.|.|.
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVRCG 159 (487)
T ss_pred eEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcceeEee
Confidence 99999999999999998877788999999999999999 57899999999999999999975 466889999999999
Q ss_pred EEccC-CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc-
Q psy4876 425 KWSPD-GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA- 502 (609)
Q Consensus 425 ~~spd-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~- 502 (609)
+|+|- +.++++|+.||.|++||++... ..+..+ .|..+|..+.+-|.| .+++++| ...|++||+.+|.
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~-----~~v~el-nhg~pVe~vl~lpsg-s~iasAg---Gn~vkVWDl~~G~q 229 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLT-----SRVVEL-NHGCPVESVLALPSG-SLIASAG---GNSVKVWDLTTGGQ 229 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCC-----ceeEEe-cCCCceeeEEEcCCC-CEEEEcC---CCeEEEEEecCCce
Confidence 99994 5589999999999999999762 345555 589999999999987 4677664 5899999999654
Q ss_pred eeEEEc-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEE
Q psy4876 503 CLDSID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581 (609)
Q Consensus 503 ~~~~~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iW 581 (609)
.+.... ++..|+|+.+..++..|++ |+-|+.|++||+.+.+.+..+. -.++|.+|+.+||++.++.|-.||.+.+=
T Consensus 230 ll~~~~~H~KtVTcL~l~s~~~rLlS--~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 230 LLTSMFNHNKTVTCLRLASDSTRLLS--GSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ehhhhhcccceEEEEEeecCCceEee--cccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeee
Confidence 444444 6679999999999999999 5589999999998888888774 67899999999999999999999998877
Q ss_pred EcCCCc
Q psy4876 582 KIFEKV 587 (609)
Q Consensus 582 dl~~~~ 587 (609)
+....+
T Consensus 307 r~~~k~ 312 (487)
T KOG0310|consen 307 RREVKK 312 (487)
T ss_pred hhhccc
Confidence 544433
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=216.26 Aligned_cols=281 Identities=16% Similarity=0.253 Sum_probs=235.1
Q ss_pred eeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
..++-|.++.+| +++++.|.++.||-... | +.+-++. |.+.|+|+..+.+
T Consensus 11 RplTqiKyN~eGDLlFscaKD~~~~vw~s~n-------------------------G--erlGty~GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 11 RPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-------------------------G--ERLGTYDGHTGAVWCCDIDWD 63 (327)
T ss_pred cccceEEecCCCcEEEEecCCCCceEEEecC-------------------------C--ceeeeecCCCceEEEEEecCC
Confidence 346668888887 77899999999998755 3 4677777 9999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEec-----CCeEEEEEcCCC------CeeEEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSR-----CGNIVHHDVRSR------DHKVAL 413 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~-----dg~I~iwd~~~~------~~~~~~ 413 (609)
.++|++|+.|.+++|||+++|+++..++ ....|..+.| ++++++.... .+.|.++|++.. +.+...
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 9999999999999999999999999987 5678888888 4666665543 467999999843 245677
Q ss_pred EccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeE
Q psy4876 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHI 493 (609)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I 493 (609)
+..+.+.++.+-|.|-+++|++|..||.|.+||++++. +.+.....|...|+.|+++++. ..++++ +.|.+-
T Consensus 143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~-----~~v~s~~~h~~~Ind~q~s~d~-T~FiT~--s~Dtta 214 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK-----ELVDSDEEHSSKINDLQFSRDR-TYFITG--SKDTTA 214 (327)
T ss_pred ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc-----eeeechhhhccccccccccCCc-ceEEec--ccCccc
Confidence 77788999999999999999999999999999999984 5666777899999999999987 566665 599999
Q ss_pred EEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEE------------EECCCCceEEEEeCCCCCEEEEE
Q psy4876 494 YFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLII------------WKYPSLVKVAELHGHSARVLNLA 561 (609)
Q Consensus 494 ~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~I------------wd~~~~~~~~~l~~h~~~V~~l~ 561 (609)
++||..+-++++++....+|.+.+++|....++.+.|-+...|.- |++-..+.+..+++|-++|++++
T Consensus 215 kl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvA 294 (327)
T KOG0643|consen 215 KLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVA 294 (327)
T ss_pred eeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeE
Confidence 999999999999999999999999999999888865433222322 22223356777899999999999
Q ss_pred EeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 562 MSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 562 ~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
|||+|+..++|+.||.||+..+...
T Consensus 295 fhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 295 FHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ECCCCcccccCCCCceEEEEEeccc
Confidence 9999999999999999999876543
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-28 Score=238.41 Aligned_cols=285 Identities=17% Similarity=0.223 Sum_probs=240.0
Q ss_pred cCCCccccccCCccCCceeEEEEEecCC-C-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeee
Q psy4876 253 IPLTADRILDAPEIQNDYYLNLIDWSHF-N-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLM 330 (609)
Q Consensus 253 i~~~p~~il~ap~~~~~~~v~~l~wsp~-~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 330 (609)
+|.....++++| ++.|+.+.|-++ + +.++|.|..|.+|++.. .......
T Consensus 163 lpS~~~~~ld~h----~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~-------------------------~k~~~~~ 213 (459)
T KOG0288|consen 163 LPSRALFVLDAH----EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLG-------------------------EKSELIS 213 (459)
T ss_pred cchhhhhhhhcc----ccccceeEEccCcchhhhcchhhhhhhhhccc-------------------------chhhhhh
Confidence 455555666766 567889999887 4 77799999999999987 5555566
Q ss_pred eec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCC
Q psy4876 331 DLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSR 407 (609)
Q Consensus 331 ~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~ 407 (609)
++. ..+.|+++.|.+++.++++++.|+.+++|++...+...++.+|...|+++.| ....+++|+.|.+|+.||+...
T Consensus 214 tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~ 293 (459)
T KOG0288|consen 214 TLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA 293 (459)
T ss_pred hhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh
Confidence 666 6688999999999999999999999999999999999999999999999999 2334999999999999999985
Q ss_pred CeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEec
Q psy4876 408 DHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 408 ~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggG 487 (609)
. +..++. ..+.+..|+.+ +..+++|..|+.|++||++.. .+......+. .|+++..++++..+++++
T Consensus 294 ~-C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~------~~~~sv~~gg-~vtSl~ls~~g~~lLsss-- 360 (459)
T KOG0288|consen 294 Y-CSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSA------DKTRSVPLGG-RVTSLDLSMDGLELLSSS-- 360 (459)
T ss_pred h-eecccc-ccccccceEec--ceeeeecccccceEEEeccCC------ceeeEeecCc-ceeeEeeccCCeEEeeec--
Confidence 3 444333 33455666665 557899999999999999988 6667776554 899999999998888874
Q ss_pred cCCCeEEEEECCCCceeEEEcC-----CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCC--CEEEE
Q psy4876 488 TADRHIYFWNVSSGACLDSIDT-----KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSA--RVLNL 560 (609)
Q Consensus 488 s~Dg~I~iwd~~t~~~~~~~~~-----~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~--~V~~l 560 (609)
.|.++.+.|+++.+....+.. .+.++.+.|||++.|+++ |+.||.|+||++.++++...+..... .|+++
T Consensus 361 -RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaA--GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~ 437 (459)
T KOG0288|consen 361 -RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAA--GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSL 437 (459)
T ss_pred -CCCceeeeecccccEEEEeeccccccccccceeEECCCCceeee--ccCCCcEEEEEccCceEEEEeccCCCCcceEEE
Confidence 899999999999998888753 347899999999999999 77999999999999999888866444 59999
Q ss_pred EEeCCCCEEEEEECCCCEEEEE
Q psy4876 561 AMSPDETTVLSAGADETLRLWK 582 (609)
Q Consensus 561 ~~spdg~~L~s~s~Dg~I~iWd 582 (609)
+|+|.|..|++++.++.+.+|.
T Consensus 438 ~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 438 SWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEcCCCchhhcccCCcceEecC
Confidence 9999999999999999999994
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=254.13 Aligned_cols=297 Identities=20% Similarity=0.327 Sum_probs=235.9
Q ss_pred CceeEEEEEecCCC--eEEEE--cCCeEEEEeCCCCCCCceEEecCCcccccccccccccc-ceeeeeeec-CCCCeEEE
Q psy4876 268 NDYYLNLIDWSHFN--VLAVA--LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNR-AIDHLMDLE-GNENVCSV 341 (609)
Q Consensus 268 ~~~~v~~l~wsp~~--lla~s--~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~-h~~~V~~v 341 (609)
++..|.+++.+|++ +.++| .|+.++||+.+.- .......+. -...++++. |.+.|.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~v----------------l~~~~~~~~~l~k~l~~m~~h~~sv~CV 75 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPV----------------LDEKEEKNENLPKHLCTMDDHDGSVNCV 75 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccc----------------cchhhhhhcccchhheeeccccCceeEE
Confidence 35558899999998 55577 7889999998751 110000001 235666777 99999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCCC------------------CeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEE
Q psy4876 342 AWIQEGYMLGVGTSLGTVQLWDVSA------------------KKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVH 401 (609)
Q Consensus 342 ~~spdg~~Lasgs~dg~I~iwd~~~------------------~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~i 401 (609)
.|++||.+||+|++|+.|.||+... .+.+..+.+|...|..++| ++.+|++++.|++|.+
T Consensus 76 R~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVii 155 (942)
T KOG0973|consen 76 RFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVII 155 (942)
T ss_pred EECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEE
Confidence 9999999999999999999998772 1367788999999999999 4899999999999999
Q ss_pred EEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC------cccEEEEEEc
Q psy4876 402 HDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH------QAAVKAIAWC 475 (609)
Q Consensus 402 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h------~~~V~~l~~s 475 (609)
|+..+. ..+..+.+|.+.|-++.|.|-|+|||+-+.|++|+||++..- ...+.+.++ ...+..+.|+
T Consensus 156 wn~~tF-~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw------~i~k~It~pf~~~~~~T~f~RlSWS 228 (942)
T KOG0973|consen 156 WNAKTF-ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW------GIEKSITKPFEESPLTTFFLRLSWS 228 (942)
T ss_pred Eccccc-eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccc------eeeEeeccchhhCCCcceeeecccC
Confidence 999998 789999999999999999999999999999999999997654 333444332 3457899999
Q ss_pred CCCCcEEEEEecc--CCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCC---------------CCeEEEEEecCCCeEE
Q psy4876 476 PWSPNVLASGGGT--ADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSD---------------YKELVSAHGFAQNQLI 537 (609)
Q Consensus 476 p~~~~llasggGs--~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~---------------g~~l~~~sG~~dg~I~ 537 (609)
|||.+|.+.- +. .-.++.|.+-.+.+.-..+-+| .++..+.|+|. -.|.++++|+.|++|.
T Consensus 229 PDG~~las~n-A~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlS 307 (942)
T KOG0973|consen 229 PDGHHLASPN-AVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLS 307 (942)
T ss_pred CCcCeecchh-hccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEE
Confidence 9996554432 11 2356888888777766666544 58999999872 1234666788999999
Q ss_pred EEECCCCceEEEEeC-CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 538 IWKYPSLVKVAELHG-HSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 538 Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
||.....+++..... ....|.+++|+|||-.|+.++.||+|.+..+++.+.
T Consensus 308 VW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 308 VWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred EEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 999988888766532 356899999999999999999999999999987654
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=221.31 Aligned_cols=236 Identities=25% Similarity=0.452 Sum_probs=202.1
Q ss_pred eEEEEEecCCC---eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 271 YLNLIDWSHFN---VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 271 ~v~~l~wsp~~---lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
.+..++|+++. +++++.||+++|||... ...++..++ |...|.++.|++.
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--------------------------~s~Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGDGSLRLFDLTM--------------------------PSKPIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred ceeEeeecCCCcceEEEEecCceEEEeccCC--------------------------CCcchhHHHhhhhheEEeccccc
Confidence 36779999863 88899999999999654 234566666 9999999999985
Q ss_pred -CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 347 -GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 347 -g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
+..+++++.||+|++|+...++.++++.+|...|....|+ ++++++++.||.+++||++..+..+. +..|..+|.
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil 194 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEIL 194 (311)
T ss_pred cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeE
Confidence 4778888999999999999999999999999999999994 68999999999999999998864444 888999999
Q ss_pred EEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 423 GLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 423 ~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
++.|+. +.+.+++|+.|+.|++||+++.. .++..+.+|.-+|..+.|+|....+|+++ +.|-+++|||...+
T Consensus 195 ~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-----~pl~eL~gh~~AVRkvk~Sph~~~lLaSa--sYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 195 CCDWSKYNHNVLATGGVDNLVRGWDIRNLR-----TPLFELNGHGLAVRKVKFSPHHASLLASA--SYDMTVRIWDPERQ 267 (311)
T ss_pred eecccccCCcEEEecCCCceEEEEehhhcc-----ccceeecCCceEEEEEecCcchhhHhhhc--cccceEEecccccc
Confidence 999998 77789999999999999999875 68899999999999999999999999998 59999999999844
Q ss_pred -ceeEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 502 -ACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 502 -~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
.++.+.++|. -++.+.|++...-.++.+| -|+.++||+.
T Consensus 268 ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g-WDe~l~Vw~p 308 (311)
T KOG0277|consen 268 DSAIETVDHHTEFVCGLDWSLFDPGQVASTG-WDELLYVWNP 308 (311)
T ss_pred hhhhhhhhccceEEeccccccccCceeeecc-cccceeeecc
Confidence 4555666665 6899999987544444444 7999999983
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-27 Score=251.31 Aligned_cols=241 Identities=17% Similarity=0.303 Sum_probs=198.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC--------------------------------C--------------
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSA--------------------------------K-------------- 367 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~--------------------------------~-------------- 367 (609)
|.+.|.++.|++||+|||+|+.||.|+||.+.. .
T Consensus 266 h~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s 345 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS 345 (712)
T ss_pred cCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence 899999999999999999999999999998754 0
Q ss_pred --------------eeEEEecCCCCceEEEEec-CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEcc-CCC
Q psy4876 368 --------------KKCRTMDGHDVRVGALAWN-TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSP-DGR 431 (609)
Q Consensus 368 --------------~~~~~l~~h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 431 (609)
+.++.+.||.+.|..|.|+ .++|++++.|.+|++|++... .++..+. |...|+||+|+| |.+
T Consensus 346 ~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~-~CL~~F~-HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 346 PCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK-ECLKVFS-HNDFVTCVAFNPVDDR 423 (712)
T ss_pred ccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc-ceeeEEe-cCCeeEEEEecccCCC
Confidence 0123456899999999995 789999999999999999975 4777765 999999999999 889
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc---
Q psy4876 432 YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID--- 508 (609)
Q Consensus 432 ~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~--- 508 (609)
||++|+-||.|+||++... .+..+..-..-|++++|.|+|+. .++| +.+|.+++|++...+....+.
T Consensus 424 yFiSGSLD~KvRiWsI~d~-------~Vv~W~Dl~~lITAvcy~PdGk~-avIG--t~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDK-------KVVDWNDLRDLITAVCYSPDGKG-AVIG--TFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred cEeecccccceEEeecCcC-------eeEeehhhhhhheeEEeccCCce-EEEE--EeccEEEEEEccCCeEEEeeeEee
Confidence 9999999999999999865 34444445578999999999864 4444 699999999999877665543
Q ss_pred ------CCCCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceEEEEeCCCC--CEEEEEEeCCCCEEEEEECCCCEE
Q psy4876 509 ------TKSQVCALLWNSDYK-ELVSAHGFAQNQLIIWKYPSLVKVAELHGHSA--RVLNLAMSPDETTVLSAGADETLR 579 (609)
Q Consensus 509 ------~~~~v~sl~~s~~g~-~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~--~V~~l~~spdg~~L~s~s~Dg~I~ 579 (609)
.+..|+.+.|.|... .+++++ .|..|+|||.++...+..|+|+.. .-....|+.||++|++++.|..|+
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTS--nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VY 571 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTS--NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVY 571 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEec--CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEE
Confidence 123799999997655 355533 799999999988888888887542 345678999999999999999999
Q ss_pred EEEcCCCcc
Q psy4876 580 LWKIFEKVK 588 (609)
Q Consensus 580 iWdl~~~~~ 588 (609)
||++.....
T Consensus 572 iW~~~~~~~ 580 (712)
T KOG0283|consen 572 IWKNDSFNS 580 (712)
T ss_pred EEeCCCCcc
Confidence 999966554
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=226.40 Aligned_cols=252 Identities=23% Similarity=0.378 Sum_probs=213.9
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe---c--CCEEEEEecCCeEEE
Q psy4876 327 DHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW---N--TYILSSGSRCGNIVH 401 (609)
Q Consensus 327 ~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~---~--~~~L~sgs~dg~I~i 401 (609)
..+..+.|++.|.+|... +++|++|+.||.++|||.. |+...++.+|.++|.+++| + ...|++++.|.++++
T Consensus 97 ~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L 173 (423)
T KOG0313|consen 97 KPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL 173 (423)
T ss_pred Cccccccchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEE
Confidence 444555588999999887 7899999999999999975 7999999999999999999 2 357999999999999
Q ss_pred EEcCCCCee---EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCC-------------------CCCCccce
Q psy4876 402 HDVRSRDHK---VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQ-------------------HTFSTQPI 459 (609)
Q Consensus 402 wd~~~~~~~---~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~-------------------~~~~~~~~ 459 (609)
|.+..+... +..-.+|...|.++...++|..+++|+.|.+|.||+..+.. ......++
T Consensus 174 w~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 174 WKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred EEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 999876532 23344999999999999999999999999999999932211 01123578
Q ss_pred EeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEE
Q psy4876 460 HSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIW 539 (609)
Q Consensus 460 ~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iw 539 (609)
..+.+|..+|.++.|++. ..+.++ +.|.+|+.||+.++.+...+.+...+.++.+++..++|++ |+.|..|++|
T Consensus 254 vtl~GHt~~Vs~V~w~d~--~v~yS~--SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~--gssdr~irl~ 327 (423)
T KOG0313|consen 254 VTLEGHTEPVSSVVWSDA--TVIYSV--SWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLAS--GSSDRHIRLW 327 (423)
T ss_pred EEecccccceeeEEEcCC--CceEee--cccceEEEEEeecccceeeeecCcceeEeecccccceeee--cCCCCceeec
Confidence 889999999999999993 466665 4999999999999999999999999999999999999988 6689999999
Q ss_pred ECCCCc---eEEEEeCCCCCEEEEEEeCCC-CEEEEEECCCCEEEEEcCCCc
Q psy4876 540 KYPSLV---KVAELHGHSARVLNLAMSPDE-TTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 540 d~~~~~---~~~~l~~h~~~V~~l~~spdg-~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
|.+++. ....|.+|.+.|..+.|+|.. ..|++|+.|+++++||+....
T Consensus 328 DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 328 DPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred CCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 987652 456788999999999999954 578899999999999998866
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=218.46 Aligned_cols=276 Identities=20% Similarity=0.344 Sum_probs=224.6
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQ 360 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~ 360 (609)
+++|++...|.-+++.-.. ......+. ..+..++.+. |.+.|++|+.+ |.++|+|+.|-+|+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~------------~~~~~s~~---~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~ 66 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEP------------KGCTDSVK---PTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIH 66 (362)
T ss_pred EEEeeeeeEEEEEEeccCc------------cccccccc---eeeeccccccccccceeEEEec--ceeEeccCCCCcEE
Confidence 6778888888877776421 00011111 2345567777 99999999985 88999999999999
Q ss_pred EEeCCCCeeEEEecCCCCceEEEEecC----CEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEE
Q psy4876 361 LWDVSAKKKCRTMDGHDVRVGALAWNT----YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASG 436 (609)
Q Consensus 361 iwd~~~~~~~~~l~~h~~~V~~l~~~~----~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg 436 (609)
|||+.+...+..+-.|.+.|+++.|.+ ..|++|+.||.|.+|+...- ..+..+++|.+.|+.|+.+|.|++.++.
T Consensus 67 IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~KLALsV 145 (362)
T KOG0294|consen 67 IYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGKLALSV 145 (362)
T ss_pred EEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCceEEEE
Confidence 999999999999999999999999943 37999999999999999986 6899999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEE
Q psy4876 437 GNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCAL 516 (609)
Q Consensus 437 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl 516 (609)
+.|+.++.||+-.|.. ..+..+. +. -+.+.|+|.|.++++.+ ...|-+|.+.+......+.....+.++
T Consensus 146 g~D~~lr~WNLV~Gr~----a~v~~L~-~~--at~v~w~~~Gd~F~v~~----~~~i~i~q~d~A~v~~~i~~~~r~l~~ 214 (362)
T KOG0294|consen 146 GGDQVLRTWNLVRGRV----AFVLNLK-NK--ATLVSWSPQGDHFVVSG----RNKIDIYQLDNASVFREIENPKRILCA 214 (362)
T ss_pred cCCceeeeehhhcCcc----ceeeccC-Cc--ceeeEEcCCCCEEEEEe----ccEEEEEecccHhHhhhhhccccceee
Confidence 9999999999998843 2222222 22 24499999998777764 688999999988877777766667777
Q ss_pred EEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEE--eCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 517 LWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAM--SPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 517 ~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~--spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
.|... .+|++ |.+++.|.+||..+..++..+.+|..+|-++.+ .|++.+|+|++.||.|+|||+....+.
T Consensus 215 ~~l~~-~~L~v--G~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 215 TFLDG-SELLV--GGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred eecCC-ceEEE--ecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccC
Confidence 77554 45555 558999999999999999999999999999984 467889999999999999999877443
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-26 Score=222.06 Aligned_cols=247 Identities=19% Similarity=0.324 Sum_probs=206.4
Q ss_pred eeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcC
Q psy4876 329 LMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVR 405 (609)
Q Consensus 329 l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~ 405 (609)
+..+. |.+.|.+++.+|+.+++|+|+.|..-.||++.++.....+.+|...|+++.| ++.+|++|+.+|.|.||+..
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 44555 9999999999999999999999999999999999999999999999999999 68999999999999999999
Q ss_pred CCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEE
Q psy4876 406 SRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 406 ~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 485 (609)
++. ....+...-..|.-+.|+|.+..|+.|+.||.|.+|.+.++ ...+.+.+|..++++=.|.|+|++++. +
T Consensus 137 tg~-~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~------~~~kv~~Gh~~~ct~G~f~pdGKr~~t-g 208 (399)
T KOG0296|consen 137 TGG-EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ------ALCKVMSGHNSPCTCGEFIPDGKRILT-G 208 (399)
T ss_pred cCc-eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc------ceeeEecCCCCCcccccccCCCceEEE-E
Confidence 985 55555556678889999999999999999999999999986 577889999999999999999975554 4
Q ss_pred eccCCCeEEEEECCCCceeEEEcCC--CCeEE------------------------------------------------
Q psy4876 486 GGTADRHIYFWNVSSGACLDSIDTK--SQVCA------------------------------------------------ 515 (609)
Q Consensus 486 gGs~Dg~I~iwd~~t~~~~~~~~~~--~~v~s------------------------------------------------ 515 (609)
..||+|++||..++.++..+... ....+
T Consensus 209 --y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~ 286 (399)
T KOG0296|consen 209 --YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD 286 (399)
T ss_pred --ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence 58999999999999887766410 00000
Q ss_pred -----EEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 516 -----LLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 516 -----l~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
+.|+..-. +.++|+-||+|.|||+...+....+ .|...|+.+.|-+ ..+|++++.||.|+.||..++...
T Consensus 287 esve~~~~ss~lp--L~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 287 ESVESIPSSSKLP--LAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred hhhhhcccccccc--hhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeeccccceE
Confidence 11111111 2244789999999999887765554 5889999999998 789999999999999999998764
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.5e-27 Score=248.20 Aligned_cols=246 Identities=19% Similarity=0.335 Sum_probs=217.5
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
....|..++|+|...+++++-.+|.|++||.+-+.++..+..|.++|..++|+ ..++++|+.|-.|+||+..+. .++
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r-rcl 86 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR-RCL 86 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc-eeh
Confidence 45778999999999999999999999999999999999999999999999996 579999999999999999987 688
Q ss_pred EEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 412 ALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
.++.+|-+.|..+.|++.-.+|++++.|.+|+||+..+. .++..+++|...|.|..|+|.. .+++++ |-|.
T Consensus 87 ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr------~~iavltGHnHYVMcAqFhptE-DlIVSa--SLDQ 157 (1202)
T KOG0292|consen 87 FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR------KCIAVLTGHNHYVMCAQFHPTE-DLIVSA--SLDQ 157 (1202)
T ss_pred hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC------ceEEEEecCceEEEeeccCCcc-ceEEEe--cccc
Confidence 999999999999999999999999999999999999998 8999999999999999999965 577777 5999
Q ss_pred eEEEEECCCCc---------------------------e--eEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 492 HIYFWNVSSGA---------------------------C--LDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 492 ~I~iwd~~t~~---------------------------~--~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
+|++||+..-+ . ...+++|. .|..++|+|.-..+++ |.+|..|++|.+
T Consensus 158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS--G~DDRqVKlWrm 235 (1202)
T KOG0292|consen 158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS--GADDRQVKLWRM 235 (1202)
T ss_pred eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEe--cCCcceeeEEEe
Confidence 99999985210 0 12234444 7999999999999988 669999999998
Q ss_pred CCCc--eEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 542 PSLV--KVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 542 ~~~~--~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
...+ .+.+..+|.+.|.++-|+|...+|++.|.|++|||||+......+.
T Consensus 236 netKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~t 287 (1202)
T KOG0292|consen 236 NETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQT 287 (1202)
T ss_pred ccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceee
Confidence 6543 3456789999999999999999999999999999999987665443
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-26 Score=230.33 Aligned_cols=297 Identities=15% Similarity=0.241 Sum_probs=229.4
Q ss_pred ccCCCccccccCCccCCceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeee
Q psy4876 252 YIPLTADRILDAPEIQNDYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHL 329 (609)
Q Consensus 252 ~i~~~p~~il~ap~~~~~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 329 (609)
.||-..+..+... .-.|..+++.|.| +++|+.|.+|++||++.-. ......
T Consensus 154 ~IP~shEi~l~hg----tk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMd-----------------------as~~~f 206 (641)
T KOG0772|consen 154 LIPGSHEIQLKHG----TKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMD-----------------------ASMRSF 206 (641)
T ss_pred cCCccceEeccCC----ceEEEEeeecCCCceeeeccccceEEEEeccccc-----------------------ccchhh
Confidence 3555544444332 3458899999987 9999999999999998621 122223
Q ss_pred eeec--CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEE------------ecCCCCceEEEEec---CCEEEE
Q psy4876 330 MDLE--GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRT------------MDGHDVRVGALAWN---TYILSS 392 (609)
Q Consensus 330 ~~~~--h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~------------l~~h~~~V~~l~~~---~~~L~s 392 (609)
..+. ....|.+++|++.|..|++.+.....+|+|-.....+.. .+||...++|.+|+ ...+++
T Consensus 207 r~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT 286 (641)
T KOG0772|consen 207 RQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLT 286 (641)
T ss_pred hccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEE
Confidence 3333 567899999999998888888888999999765443332 35799999999995 478999
Q ss_pred EecCCeEEEEEcCCCCeeEEEEc-----cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcc
Q psy4876 393 GSRCGNIVHHDVRSRDHKVALLQ-----NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA 467 (609)
Q Consensus 393 gs~dg~I~iwd~~~~~~~~~~~~-----~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 467 (609)
++.||++++||+.........+. +..-.++.++|++||++||+|+.||.|.+|+...... ....+.-..|..
T Consensus 287 ~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v---~p~~~vk~AH~~ 363 (641)
T KOG0772|consen 287 CSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV---RPVMKVKDAHLP 363 (641)
T ss_pred ecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccc---ccceEeeeccCC
Confidence 99999999999987654444443 3345789999999999999999999999999865422 122233345766
Q ss_pred --cEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC-ceeEEEc---CCCCeEEEEEcCCCCeEEEEEe----cCCCeEE
Q psy4876 468 --AVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG-ACLDSID---TKSQVCALLWNSDYKELVSAHG----FAQNQLI 537 (609)
Q Consensus 468 --~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~-~~~~~~~---~~~~v~sl~~s~~g~~l~~~sG----~~dg~I~ 537 (609)
.|+||.|+++|+.|+.-| .|+++++||++.. +++.+.. ....-+.++|+|+.++|++++. ...|.++
T Consensus 364 g~~Itsi~FS~dg~~LlSRg---~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~ 440 (641)
T KOG0772|consen 364 GQDITSISFSYDGNYLLSRG---FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLF 440 (641)
T ss_pred CCceeEEEeccccchhhhcc---CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEE
Confidence 899999999997666544 7999999999954 4555443 2346788999999999998642 3457899
Q ss_pred EEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEE
Q psy4876 538 IWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581 (609)
Q Consensus 538 Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iW 581 (609)
+||..+...+..+.-....|..+.|||.=+.|+.++.||+++||
T Consensus 441 f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 441 FFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred EEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 99999999999987778889999999998899999999999886
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=210.15 Aligned_cols=275 Identities=19% Similarity=0.254 Sum_probs=224.7
Q ss_pred eeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
-.|++|+|+.+| +++++.|.+|+|||..+ +.. +.++. +.-.|..+.|...
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~-------------------------g~~--~~ti~skkyG~~~~~Fth~ 67 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLS-------------------------GKQ--VKTINSKKYGVDLACFTHH 67 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCC-------------------------Cce--eeEeecccccccEEEEecC
Confidence 458999999997 66678888999999988 443 33444 5567788888877
Q ss_pred CCEEEEEeC--CCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 347 GYMLGVGTS--LGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 347 g~~Lasgs~--dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
...++.++. |.+|+..++.+.+.++.+.||...|..|+.+ ++.+++++.|++|++||++... +...+.....+
T Consensus 68 ~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~-cqg~l~~~~~p-- 144 (311)
T KOG1446|consen 68 SNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK-CQGLLNLSGRP-- 144 (311)
T ss_pred CceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-CceEEecCCCc--
Confidence 777776766 7899999999999999999999999999995 5899999999999999999763 44444433333
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec---CCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC
Q psy4876 423 GLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS---RHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS 499 (609)
Q Consensus 423 ~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~ 499 (609)
.++|.|+|-++|++...+.|++||++.-.. .|..++. ......+.|.|+|+|+.+|++. ..+.+++.|.-
T Consensus 145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dk----gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT---~~s~~~~lDAf 217 (311)
T KOG1446|consen 145 IAAFDPEGLIFALANGSELIKLYDLRSFDK----GPFTTFSITDNDEAEWTDLEFSPDGKSILLST---NASFIYLLDAF 217 (311)
T ss_pred ceeECCCCcEEEEecCCCeEEEEEecccCC----CCceeEccCCCCccceeeeEEcCCCCEEEEEe---CCCcEEEEEcc
Confidence 468999999999999888999999997532 3444443 3366789999999999998874 68999999999
Q ss_pred CCceeEEEcCCC----CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC-CCCCEEEEEEeCCCCEEEEEEC
Q psy4876 500 SGACLDSIDTKS----QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG-HSARVLNLAMSPDETTVLSAGA 574 (609)
Q Consensus 500 t~~~~~~~~~~~----~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~s~s~ 574 (609)
+|..+.++..+. -..+.+|.||++++++ |..||.|++|++.++.++..+.+ +.+.+.++.|+|.-..++++
T Consensus 218 ~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~--gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa-- 293 (311)
T KOG1446|consen 218 DGTVKSTFSGYPNAGNLPLSATFTPDSKFVLS--GSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA-- 293 (311)
T ss_pred CCcEeeeEeeccCCCCcceeEEECCCCcEEEE--ecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--
Confidence 999988887543 2358899999999999 66899999999999999999998 78999999999986666665
Q ss_pred CCCEEEEEcCC
Q psy4876 575 DETLRLWKIFE 585 (609)
Q Consensus 575 Dg~I~iWdl~~ 585 (609)
+..+.+|=...
T Consensus 294 ~s~l~fw~p~~ 304 (311)
T KOG1446|consen 294 SSNLVFWLPDE 304 (311)
T ss_pred CceEEEEeccc
Confidence 55788887654
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=232.83 Aligned_cols=241 Identities=21% Similarity=0.333 Sum_probs=209.9
Q ss_pred CCCCeEEEEEccCC-CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCee
Q psy4876 334 GNENVCSVAWIQEG-YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 334 h~~~V~~v~~spdg-~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
....|++++|+|.. .-+|+.++ -.+.||+..+....+.+......|.++.| ||.+|++|+..|.|+++|..+. ..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-~i 102 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-VI 102 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH-HH
Confidence 45789999999976 33444444 57999999988888888888899999999 7999999999999999996664 47
Q ss_pred EEEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC
Q psy4876 411 VALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA 489 (609)
Q Consensus 411 ~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~ 489 (609)
+..+.+|+.+|..+.|+| ++..|++|+.|+.+++||+.+. .....+.+|+..|.|.+|+|....++++|| .
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a------~v~~~l~~htDYVR~g~~~~~~~hivvtGs--Y 174 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA------YVQAELSGHTDYVRCGDISPANDHIVVTGS--Y 174 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc------EEEEEecCCcceeEeeccccCCCeEEEecC--C
Confidence 788999999999999999 5667889999999999999987 446688999999999999999989999985 9
Q ss_pred CCeEEEEECCCC-ceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE-EEEeCCCCCEEEEEEeCCCC
Q psy4876 490 DRHIYFWNVSSG-ACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKV-AELHGHSARVLNLAMSPDET 567 (609)
Q Consensus 490 Dg~I~iwd~~t~-~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~-~~l~~h~~~V~~l~~spdg~ 567 (609)
||.|++||++.. ..+.+++++.+|.++.+-|.|..+++++ .+.|+|||+-+|..+ ..+..|...|+|+++..++.
T Consensus 175 Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg---Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~ 251 (487)
T KOG0310|consen 175 DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG---GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST 251 (487)
T ss_pred CceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC---CCeEEEEEecCCceehhhhhcccceEEEEEeecCCc
Confidence 999999999976 7889999999999999999999999985 489999999866554 44445999999999999999
Q ss_pred EEEEEECCCCEEEEEcCCCc
Q psy4876 568 TVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 568 ~L~s~s~Dg~I~iWdl~~~~ 587 (609)
.|++|+-|+.|++||+.+-+
T Consensus 252 rLlS~sLD~~VKVfd~t~~K 271 (487)
T KOG0310|consen 252 RLLSGSLDRHVKVFDTTNYK 271 (487)
T ss_pred eEeecccccceEEEEccceE
Confidence 99999999999999965443
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-25 Score=233.83 Aligned_cols=279 Identities=21% Similarity=0.327 Sum_probs=239.7
Q ss_pred eeEEEEEecCCC-eEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFN-VLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~-lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
+.|+|+.-+++. ++| |-.||.|+||+..+ + ..+.++. |...|+++.|...
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s-------------------------~--~~~~tfngHK~AVt~l~fd~~ 118 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLES-------------------------E--EILITFNGHKAAVTTLKFDKI 118 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCC-------------------------C--ceeeeecccccceEEEEEccc
Confidence 467888888886 445 55699999999986 4 4566676 9999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-c-CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-N-TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGL 424 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~-~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 424 (609)
|..||+|+.|+.|.|||+-...-+..+.+|...|+..-| + ..++++.+.|+.|++||+.+. ++..+.-.|..+|.++
T Consensus 119 G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tq-hCf~Thvd~r~Eiw~l 197 (888)
T KOG0306|consen 119 GTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQ-HCFETHVDHRGEIWAL 197 (888)
T ss_pred CceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccc-eeeeEEecccceEEEE
Confidence 999999999999999999888888999999999999999 3 689999999999999999996 7888889999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCC-----------------------------------------------------
Q psy4876 425 KWSPDGRYLASGGNDNLLNIWSGVPGQ----------------------------------------------------- 451 (609)
Q Consensus 425 ~~spdg~~lasgs~Dg~I~iwd~~~~~----------------------------------------------------- 451 (609)
++++ +.+++++.|+.+++|++....
T Consensus 198 ~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s 275 (888)
T KOG0306|consen 198 VLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRS 275 (888)
T ss_pred EEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecC
Confidence 9987 789999999999999981000
Q ss_pred -------------------C------------------------------------CCCc-------------------c
Q psy4876 452 -------------------H------------------------------------TFST-------------------Q 457 (609)
Q Consensus 452 -------------------~------------------------------------~~~~-------------------~ 457 (609)
. .... .
T Consensus 276 ~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~ 355 (888)
T KOG0306|consen 276 KEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSG 355 (888)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCC
Confidence 0 0000 0
Q ss_pred c---------eEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEE
Q psy4876 458 P---------IHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSA 528 (609)
Q Consensus 458 ~---------~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~ 528 (609)
. ...+.+|...|.+++++.+. .++++| ..+.|++|+..+.+|+.++... .+.+..|.|.++++++
T Consensus 356 ~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~-~~~~Sg---a~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~- 429 (888)
T KOG0306|consen 356 KTSPEADRTSNIEIGGHRSDVRSLCVSSDS-ILLASG---AGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVL- 429 (888)
T ss_pred CCCccccccceeeeccchhheeEEEeecCc-eeeeec---CCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEE-
Confidence 0 02345788889999999875 566666 4799999999999999999877 7888999999999999
Q ss_pred EecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 529 HGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 529 sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
|...|.+.+||+.+...+.++++|.+.|+.++.+||+..+++||+|.+|++||+.-
T Consensus 430 -G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 430 -GTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKL 485 (888)
T ss_pred -eccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEE
Confidence 66999999999999999999999999999999999999999999999999999864
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-26 Score=216.78 Aligned_cols=212 Identities=21% Similarity=0.378 Sum_probs=195.2
Q ss_pred EEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q psy4876 370 CRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSG 447 (609)
Q Consensus 370 ~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~ 447 (609)
+..+.+|.+.|..+.| +|.+|++|+.|..|.+|++....+....+++|++.|..+.|.+|+..+++++.|.+|+.||+
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 4456799999999999 57999999999999999988766678889999999999999999999999999999999999
Q ss_pred CCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEE
Q psy4876 448 VPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVS 527 (609)
Q Consensus 448 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~ 527 (609)
+++ +.++.+.+|...|.++.-+..|..++.+| +.|+++++||+++..+++++....+++++.|...+..+++
T Consensus 120 ~tG------~~~rk~k~h~~~vNs~~p~rrg~~lv~Sg--sdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 120 ETG------KRIRKHKGHTSFVNSLDPSRRGPQLVCSG--SDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred ccc------eeeehhccccceeeecCccccCCeEEEec--CCCceEEEEeecccchhhccccceeEEEEEecccccceee
Confidence 999 88999999999999999766777777775 6999999999999999999999999999999999999999
Q ss_pred EEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 528 AHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 528 ~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
|.-|+.|++||++....+..+.||.+.|+.+..+++|.++.+-+.|.+|++||+..-.+..+
T Consensus 192 --ggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 192 --GGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR 253 (338)
T ss_pred --ccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc
Confidence 56899999999999999999999999999999999999999999999999999987655443
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=234.70 Aligned_cols=245 Identities=16% Similarity=0.283 Sum_probs=190.7
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeE-------------EEecCCCCceEEEEec---CCEEEEEecCCeEE
Q psy4876 337 NVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKC-------------RTMDGHDVRVGALAWN---TYILSSGSRCGNIV 400 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~-------------~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~ 400 (609)
.|.....++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+ +.+|++|+.||+|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 3444555556555555665566666665433221 2467899999999995 47999999999999
Q ss_pred EEEcCCCC------eeEEEEccCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEE
Q psy4876 401 HHDVRSRD------HKVALLQNHTQEVCGLKWSPDG-RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473 (609)
Q Consensus 401 iwd~~~~~------~~~~~~~~h~~~V~~l~~spdg-~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~ 473 (609)
+||+.... ..+..+.+|...|.+++|+|++ ++|++|+.|+.|+|||+.++ ..+..+..|...|.+++
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg------~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG------KAVEVIKCHSDQITSLE 175 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC------eEEEEEcCCCCceEEEE
Confidence 99997642 2466788999999999999975 69999999999999999987 67788889999999999
Q ss_pred EcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCC--CeEEEEEcCCCCeEEEEEe--cCCCeEEEEECCCCce-EE
Q psy4876 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKS--QVCALLWNSDYKELVSAHG--FAQNQLIIWKYPSLVK-VA 548 (609)
Q Consensus 474 ~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~--~v~sl~~s~~g~~l~~~sG--~~dg~I~Iwd~~~~~~-~~ 548 (609)
|+|++. +|+++ +.|+.|++||+++++.+..+..+. .+..+.|.+++..+++++. ..|+.|++||+++... +.
T Consensus 176 ~spdG~-lLatg--s~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 176 WNLDGS-LLCTT--SKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred EECCCC-EEEEe--cCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 999884 66666 389999999999999988887664 3567889999888876532 3589999999987653 33
Q ss_pred EEeCC-CCCEEEEEEeCCCCEEEEEE-CCCCEEEEEcCCCccch
Q psy4876 549 ELHGH-SARVLNLAMSPDETTVLSAG-ADETLRLWKIFEKVKSK 590 (609)
Q Consensus 549 ~l~~h-~~~V~~l~~spdg~~L~s~s-~Dg~I~iWdl~~~~~~~ 590 (609)
....+ ...+....|++++.+|++++ .|+.|++||+.++....
T Consensus 253 ~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 253 TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 33323 34566778999999999988 59999999998876543
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-27 Score=234.80 Aligned_cols=254 Identities=20% Similarity=0.315 Sum_probs=216.6
Q ss_pred eeeeec-CCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCC-CeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEE
Q psy4876 328 HLMDLE-GNENVCSVAWIQ-EGYMLGVGTSLGTVQLWDVSA-KKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHH 402 (609)
Q Consensus 328 ~l~~~~-h~~~V~~v~~sp-dg~~Lasgs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iw 402 (609)
.+..+. |...|+++.|.| .+.+|++|+.|+.|+||++.. +++++++.+|..+|..++| .|..|++++.|+.|++|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 445566 999999999999 789999999999999999976 8999999999999999999 48899999999999999
Q ss_pred EcCCCCeeEEEEccCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcE
Q psy4876 403 DVRSRDHKVALLQNHTQEVCGLKWSPDG-RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 403 d~~~~~~~~~~~~~h~~~V~~l~~spdg-~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 481 (609)
|++++. ++..+. ....+.|+.|+||+ +.|++|+.|+.|+.||++++ +.++.+..|-+.|..+.|-+++..+
T Consensus 286 DtETG~-~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~------kvvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 286 DTETGQ-VLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG------KVVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred ccccce-EEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch------HHHHHHHhhhhheeeeEEccCCceE
Confidence 999984 555554 34578899999988 88999999999999999999 7888999999999999999999877
Q ss_pred EEEEeccCCCeEEEEECCCCceeEEEcCC--CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC---ceEEEEeCCC--
Q psy4876 482 LASGGGTADRHIYFWNVSSGACLDSIDTK--SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL---VKVAELHGHS-- 554 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t~~~~~~~~~~--~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~---~~~~~l~~h~-- 554 (609)
+.+ +.|+.++||+.+.+..+..+... ....++..+|++++++. -+.|+.|.||.+... .+...+.||.
T Consensus 358 iss---SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a--Qs~dN~i~ifs~~~~~r~nkkK~feGh~va 432 (503)
T KOG0282|consen 358 ISS---SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAA--QSMDNYIAIFSTVPPFRLNKKKRFEGHSVA 432 (503)
T ss_pred eee---ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehh--hccCceEEEEecccccccCHhhhhcceecc
Confidence 766 48999999999988777665433 36778999999999998 448999999986532 3334567775
Q ss_pred CCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 555 ARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 555 ~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
+.-..+.|||||.+|++|+.||.+.+||..+.....+.+.
T Consensus 433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka 472 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA 472 (503)
T ss_pred CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc
Confidence 4567899999999999999999999999988766555443
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-26 Score=235.92 Aligned_cols=298 Identities=19% Similarity=0.246 Sum_probs=229.2
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEE-----------ecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYII-----------CQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYML 350 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~L 350 (609)
+++++.|++|++||++...+..... -...+...++.-.............+.....+.+++.+|+|++|
T Consensus 395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL 474 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL 474 (1080)
T ss_pred eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence 7889999999999998732221110 00000000000000000111111122245689999999999999
Q ss_pred EEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec-----CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 351 GVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN-----TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 351 asgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~-----~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
|+|..-|.++||++..-+....+..|...|.|+.|+ ..+|+++++|..|+|||+...-..++++.+|...|+++.
T Consensus 475 AsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvK 554 (1080)
T KOG1408|consen 475 ASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVK 554 (1080)
T ss_pred cccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEE
Confidence 999999999999999999999999999999999994 478999999999999999887778899999999999999
Q ss_pred EccCC--CEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce
Q psy4876 426 WSPDG--RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC 503 (609)
Q Consensus 426 ~spdg--~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~ 503 (609)
|--.| ..+++++.|..|.+--.+.... ...-+.++-......+..++..|..+.++..| .|+.|+|||+.+|+.
T Consensus 555 Fa~~gln~~MiscGADksimFr~~qk~~~-g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c---QDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 555 FACNGLNRKMISCGADKSIMFRVNQKASS-GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC---QDRNIRIFDIESGKQ 630 (1080)
T ss_pred EeecCCceEEEeccCchhhheehhccccC-ceeccccccccccceEEEeeeCCCcceEEEEe---cccceEEEeccccce
Confidence 98877 6789999998876533332110 00011122222345688999999876544443 899999999999999
Q ss_pred eEEEcCC----CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEE
Q psy4876 504 LDSIDTK----SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLR 579 (609)
Q Consensus 504 ~~~~~~~----~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~ 579 (609)
.+.|++. +....+...|.|.|+++.+ .|.+|.++|+.+++++....||...|+.+.|.+|.+.|++++.||.|.
T Consensus 631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atSc--sdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIF 708 (1080)
T KOG1408|consen 631 VKSFKGSRDHEGDLIKVILDPSGIYLATSC--SDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIF 708 (1080)
T ss_pred eeeecccccCCCceEEEEECCCccEEEEee--cCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEE
Confidence 9999743 5788999999999999955 899999999999999999999999999999999999999999999999
Q ss_pred EEEcCC
Q psy4876 580 LWKIFE 585 (609)
Q Consensus 580 iWdl~~ 585 (609)
||.+..
T Consensus 709 vW~lp~ 714 (1080)
T KOG1408|consen 709 VWKLPL 714 (1080)
T ss_pred EEECch
Confidence 999875
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-25 Score=219.56 Aligned_cols=274 Identities=20% Similarity=0.277 Sum_probs=232.6
Q ss_pred EEEEEecC--CCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSH--FNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp--~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~ 348 (609)
+..++..+ +.+++++.|..+.++|... ++ .+..++ |...|+.+.++++..
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~~s-------------------------~q--~l~~~~Gh~kki~~v~~~~~~~ 274 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDKPS-------------------------NQ--ILATLKGHTKKITSVKFHKDLD 274 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEecch-------------------------hh--hhhhccCcceEEEEEEeccchh
Confidence 45667766 4689999999999999877 44 344555 899999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEc-cCCCCeEEEE
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQ-NHTQEVCGLK 425 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~ 425 (609)
.+++++.|-.|+||.............|..+|+.+.. +|.+|++++.||.+.+.|++++........ ...-.+++.+
T Consensus 275 ~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 275 TVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred heeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 9999999999999999888888888999999999988 589999999999999999999854333322 2334689999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeE
Q psy4876 426 WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLD 505 (609)
Q Consensus 426 ~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~ 505 (609)
|+|||.+|++|..|+.|+|||+..+ ..+..|.+|.++|+.++|+.+| +.++++ ..|+.|++||++..+...
T Consensus 355 fHpDgLifgtgt~d~~vkiwdlks~------~~~a~Fpght~~vk~i~FsENG-Y~Lat~--add~~V~lwDLRKl~n~k 425 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDGVVKIWDLKSQ------TNVAKFPGHTGPVKAISFSENG-YWLATA--ADDGSVKLWDLRKLKNFK 425 (506)
T ss_pred EcCCceEEeccCCCceEEEEEcCCc------cccccCCCCCCceeEEEeccCc-eEEEEE--ecCCeEEEEEehhhcccc
Confidence 9999999999999999999999988 6778899999999999999988 566665 389999999999888888
Q ss_pred EEcCCC--CeEEEEEcCCCCeEEEEEecCCCeEEEEEC--CCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEE
Q psy4876 506 SIDTKS--QVCALLWNSDYKELVSAHGFAQNQLIIWKY--PSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581 (609)
Q Consensus 506 ~~~~~~--~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~--~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iW 581 (609)
++.... .+.++.|...|.+|+++ +.+=+|++++- ..+.++..+..|.+..+++.|....++++++|.|..++++
T Consensus 426 t~~l~~~~~v~s~~fD~SGt~L~~~--g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 426 TIQLDEKKEVNSLSFDQSGTYLGIA--GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred eeeccccccceeEEEcCCCCeEEee--cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 776544 69999999999999985 24555555552 3678888999999999999999999999999999999988
Q ss_pred Ec
Q psy4876 582 KI 583 (609)
Q Consensus 582 dl 583 (609)
.+
T Consensus 504 a~ 505 (506)
T KOG0289|consen 504 AL 505 (506)
T ss_pred ec
Confidence 65
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-24 Score=207.54 Aligned_cols=247 Identities=16% Similarity=0.214 Sum_probs=206.8
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEec--CCeEEEEEcCCCCe
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSR--CGNIVHHDVRSRDH 409 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~--dg~I~iwd~~~~~~ 409 (609)
..+.|.++.|+.+|.+|++++.|..++|||..+++.++++..+...|..++| +.+.++.++. |.+|+..++.+. +
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN-k 91 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN-K 91 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC-c
Confidence 4688999999999999999999999999999999999999999889999999 4566666665 889999999986 6
Q ss_pred eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC
Q psy4876 410 KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA 489 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~ 489 (609)
.++.+.||...|.+|+.+|-+..+++++.|++|++||++.. .+...+.. ..-..++|.|.| .++|++. .
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~------~cqg~l~~--~~~pi~AfDp~G-LifA~~~--~ 160 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK------KCQGLLNL--SGRPIAAFDPEG-LIFALAN--G 160 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC------CCceEEec--CCCcceeECCCC-cEEEEec--C
Confidence 89999999999999999998899999999999999999976 44444432 223467899988 5777764 3
Q ss_pred CCeEEEEECCCC--ceeEEEcC----CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCE---EEE
Q psy4876 490 DRHIYFWNVSSG--ACLDSIDT----KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARV---LNL 560 (609)
Q Consensus 490 Dg~I~iwd~~t~--~~~~~~~~----~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V---~~l 560 (609)
...|++||++.- .+..++.. ......+.|+++|++++.++ ..+.+++.|.-+|..+..+.++...- ...
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT--~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST--NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe--CCCcEEEEEccCCcEeeeEeeccCCCCcceeE
Confidence 449999999853 34444432 45899999999999999955 79999999999999999888775432 678
Q ss_pred EEeCCCCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 561 AMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 561 ~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
+|+||+++|++|+.||+|.+|++.++.+..+-..
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 8999999999999999999999988876654433
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=203.33 Aligned_cols=275 Identities=17% Similarity=0.265 Sum_probs=230.8
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
.|.+|+|+.+| ++.++.|+++.+|+++. .....-.... |.+.|-.++|+|..
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~-------------------------~r~~~~~~~~gh~~svdql~w~~~~ 76 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLER-------------------------DRFRKELVYRGHTDSVDQLCWDPKH 76 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecc-------------------------hhhhhhhcccCCCcchhhheeCCCC
Confidence 47889999987 77799999999999987 4322222333 88899999999865
Q ss_pred -CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 348 -YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 348 -~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
..|++++.|..|++||+..+++...+......+.-..+ ++.+++.++.|..|.+.|.++.. .. .-......+..++
T Consensus 77 ~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~-~~-~~~~~~~e~ne~~ 154 (313)
T KOG1407|consen 77 PDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYK-IV-NEEQFKFEVNEIS 154 (313)
T ss_pred CcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccc-ee-ehhcccceeeeee
Confidence 89999999999999999999999988866666654444 78999999999999999999863 33 3334566788899
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeE
Q psy4876 426 WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLD 505 (609)
Q Consensus 426 ~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~ 505 (609)
|+-++.+|+....-|+|.|...... +++..+..|.....||.|+|+|+ .+|+| +.|..+.+||+..--|++
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsypsL------kpv~si~AH~snCicI~f~p~Gr-yfA~G--sADAlvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPSL------KPVQSIKAHPSNCICIEFDPDGR-YFATG--SADALVSLWDVDELICER 225 (313)
T ss_pred ecCCCCEEEEecCCceEEEEecccc------ccccccccCCcceEEEEECCCCc-eEeec--cccceeeccChhHhhhhe
Confidence 9988888777766799999988766 89999999999999999999995 67776 589999999999999999
Q ss_pred EEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECC---------
Q psy4876 506 SIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGAD--------- 575 (609)
Q Consensus 506 ~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D--------- 575 (609)
.+.. .-+|..+.|+.+|++|++ +++|..|-|=++++|..+.+++ +.++...++|+|...+||-++.|
T Consensus 226 ~isRldwpVRTlSFS~dg~~lAS--aSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~rea 302 (313)
T KOG1407|consen 226 CISRLDWPVRTLSFSHDGRMLAS--ASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREA 302 (313)
T ss_pred eeccccCceEEEEeccCcceeec--cCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCcccccc
Confidence 9875 459999999999999999 5599999999999999999986 78889999999999999988765
Q ss_pred CCEEEEEcC
Q psy4876 576 ETLRLWKIF 584 (609)
Q Consensus 576 g~I~iWdl~ 584 (609)
|+|++|-+.
T Consensus 303 g~vKiFG~~ 311 (313)
T KOG1407|consen 303 GTVKIFGLS 311 (313)
T ss_pred ceeEEecCC
Confidence 567776554
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=222.52 Aligned_cols=254 Identities=23% Similarity=0.485 Sum_probs=211.4
Q ss_pred ceeeeeeecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEeCCCCee----------EEEecCCCCceEEEEec---CCEE
Q psy4876 325 AIDHLMDLEGNENVCSVAWIQEG-YMLGVGTSLGTVQLWDVSAKKK----------CRTMDGHDVRVGALAWN---TYIL 390 (609)
Q Consensus 325 ~~~~l~~~~h~~~V~~v~~spdg-~~Lasgs~dg~I~iwd~~~~~~----------~~~l~~h~~~V~~l~~~---~~~L 390 (609)
.++....+.|.+.|+.+.+.|+. ..+|+++..+.|.|||..+... -..+.+|...-.+|+|+ ...|
T Consensus 114 ~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 114 KVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred ceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence 44555556699999999999976 7778888999999999865321 12678899988889995 4688
Q ss_pred EEEecCCeEEEEEcCCCCe------eEEEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec
Q psy4876 391 SSGSRCGNIVHHDVRSRDH------KVALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS 463 (609)
Q Consensus 391 ~sgs~dg~I~iwd~~~~~~------~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~ 463 (609)
++++.|+.|.+||+..... ....+.+|...|..++|++ +..+|++++.|+.+.|||+++.. .++.+...
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~----~~~~~~~~ 269 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT----SKPSHSVK 269 (422)
T ss_pred eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC----CCCccccc
Confidence 9999999999999986543 3567889999999999999 66789999999999999999631 26777888
Q ss_pred CCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC-ceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 464 RHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG-ACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 464 ~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~-~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
+|.+.|.|++|+|.+.++||+| +.|++|++||+++- +++.++..+ ..|..+.|+|+...+++.+| .|+.+.|||+
T Consensus 270 ah~~~vn~~~fnp~~~~ilAT~--S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg-~D~rl~vWDl 346 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFNEFILATG--SADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG-TDRRLNVWDL 346 (422)
T ss_pred ccCCceeEEEeCCCCCceEEec--cCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc-cCCcEEEEec
Confidence 9999999999999999999998 48999999999954 467777766 48999999999988888766 8999999998
Q ss_pred CCC--------------ceEEEEeCCCCCEEEEEEeCCCC-EEEEEECCCCEEEEEcCC
Q psy4876 542 PSL--------------VKVAELHGHSARVLNLAMSPDET-TVLSAGADETLRLWKIFE 585 (609)
Q Consensus 542 ~~~--------------~~~~~l~~h~~~V~~l~~spdg~-~L~s~s~Dg~I~iWdl~~ 585 (609)
... +.+..-.||...|.++.|+|+.. .|+|++.|+.+.||++..
T Consensus 347 s~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 347 SRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 532 22344468999999999999877 567889999999999874
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-25 Score=215.16 Aligned_cols=249 Identities=17% Similarity=0.276 Sum_probs=212.0
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEec--------CCCCceEEEEe--cCCEEEEEecCCeEEE
Q psy4876 332 LEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMD--------GHDVRVGALAW--NTYILSSGSRCGNIVH 401 (609)
Q Consensus 332 ~~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~--------~h~~~V~~l~~--~~~~L~sgs~dg~I~i 401 (609)
+.....+.|..|+|||+||++|+.||-|.||+..+|+..+.++ -+...|.|+.| +...|++|+.||.|++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 3356778899999999999999999999999999987655433 47899999999 5789999999999999
Q ss_pred EEcCCCCeeEEEEc-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCc
Q psy4876 402 HDVRSRDHKVALLQ-NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPN 480 (609)
Q Consensus 402 wd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 480 (609)
|.+.++. ++..+. .|+..|+|+.|+.|+..+++++.|.+|+|.-+.+| +++..+.+|...|+...|.++|..
T Consensus 290 Wri~tG~-ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG------K~LKEfrGHsSyvn~a~ft~dG~~ 362 (508)
T KOG0275|consen 290 WRIETGQ-CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG------KCLKEFRGHSSYVNEATFTDDGHH 362 (508)
T ss_pred EEEecch-HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc------hhHHHhcCccccccceEEcCCCCe
Confidence 9999985 555554 89999999999999999999999999999999999 899999999999999999999977
Q ss_pred EEEEEeccCCCeEEEEECCCCceeEEEcCC---CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC---CC
Q psy4876 481 VLASGGGTADRHIYFWNVSSGACLDSIDTK---SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG---HS 554 (609)
Q Consensus 481 llasggGs~Dg~I~iwd~~t~~~~~~~~~~---~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~---h~ 554 (609)
++.+ +.||+|++|+..+.+|+.++... ..|.++..-|....-++.+. ..++|+|.++. |..+..+.. ..
T Consensus 363 iisa---SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-rsntv~imn~q-GQvVrsfsSGkREg 437 (508)
T KOG0275|consen 363 IISA---SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN-RSNTVYIMNMQ-GQVVRSFSSGKREG 437 (508)
T ss_pred EEEe---cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc-CCCeEEEEecc-ceEEeeeccCCccC
Confidence 6655 47999999999999999998754 37888888887766555443 78899998864 566666632 33
Q ss_pred CCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhh
Q psy4876 555 ARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKK 592 (609)
Q Consensus 555 ~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~ 592 (609)
+...+++.+|.|.++++.+.|+.++.|.+..+..+...
T Consensus 438 GdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl 475 (508)
T KOG0275|consen 438 GDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL 475 (508)
T ss_pred CceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee
Confidence 55778889999999999999999999999988766543
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=204.00 Aligned_cols=244 Identities=20% Similarity=0.324 Sum_probs=208.3
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEE--EecCCCCceEEEEe---cCCEEEEEecCCeEEEEEcCCCC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCR--TMDGHDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRD 408 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~--~l~~h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~~~ 408 (609)
|...|.+|+|+.+|..||+|+.|+++.||+++..+... ...+|.+.|-.++| ++..|++++.|.+|++||++.+.
T Consensus 19 ~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k 98 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGK 98 (313)
T ss_pred hhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCc
Confidence 78899999999999999999999999999998775544 34679999999999 47899999999999999999974
Q ss_pred eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEecc
Q psy4876 409 HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGT 488 (609)
Q Consensus 409 ~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs 488 (609)
++.......+.+ -+.|+|+|+++++++.|..|.+.|.++. +.+... ...-.+..++|+.++..++++.
T Consensus 99 -~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~------~~~~~~-~~~~e~ne~~w~~~nd~Fflt~--- 166 (313)
T KOG1407|consen 99 -CTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTY------KIVNEE-QFKFEVNEISWNNSNDLFFLTN--- 166 (313)
T ss_pred -EEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEeccc------ceeehh-cccceeeeeeecCCCCEEEEec---
Confidence 565555444444 4899999999999999999999999976 333333 2445678899997665555554
Q ss_pred CCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCC
Q psy4876 489 ADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET 567 (609)
Q Consensus 489 ~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 567 (609)
.-|+|.|.....-+++.++..| +...+|.|+|+|+++++ |+.|-.+.+||+....++..+..+.-+|..+.|+.||+
T Consensus 167 GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~--GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 167 GLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFAT--GSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGR 244 (313)
T ss_pred CCceEEEEeccccccccccccCCcceEEEEECCCCceEee--ccccceeeccChhHhhhheeeccccCceEEEEeccCcc
Confidence 3799999999999999999876 48899999999999999 66899999999999999999999999999999999999
Q ss_pred EEEEEECCCCEEEEEcCCCccchh
Q psy4876 568 TVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 568 ~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
+||+|++|..|-|=++.++....+
T Consensus 245 ~lASaSEDh~IDIA~vetGd~~~e 268 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVETGDRVWE 268 (313)
T ss_pred eeeccCccceEEeEecccCCeEEE
Confidence 999999999998888877776543
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=227.40 Aligned_cols=224 Identities=17% Similarity=0.289 Sum_probs=176.2
Q ss_pred EeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCe-------eEEEEccCCCCeE
Q psy4876 353 GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDH-------KVALLQNHTQEVC 422 (609)
Q Consensus 353 gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~-------~~~~~~~h~~~V~ 422 (609)
|+.+|.|++|+......+..+.+|...|.+++|+ +.+|++|+.||.|++||+.+... .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 5667899999998888889999999999999995 57999999999999999986421 3446788999999
Q ss_pred EEEEccCCCE-EEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 423 GLKWSPDGRY-LASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 423 ~l~~spdg~~-lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
+++|+|++.. |++++.|++|+|||++++ +.+..+. |...|.+++|+|+|. +|++++ .|+.|+|||++++
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg------~~~~~i~-~~~~V~SlswspdG~-lLat~s--~D~~IrIwD~Rsg 199 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENE------KRAFQIN-MPKKLSSLKWNIKGN-LLSGTC--VGKHMHIIDPRKQ 199 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCC------cEEEEEe-cCCcEEEEEECCCCC-EEEEEe--cCCEEEEEECCCC
Confidence 9999998875 578999999999999987 4555554 567899999999986 555553 7999999999999
Q ss_pred ceeEEEcCCC-Ce-----EEEEEcCCCCeEEEEEecCC---CeEEEEECCC-CceEEEEe--CCCCCEEEEEEeCCCCEE
Q psy4876 502 ACLDSIDTKS-QV-----CALLWNSDYKELVSAHGFAQ---NQLIIWKYPS-LVKVAELH--GHSARVLNLAMSPDETTV 569 (609)
Q Consensus 502 ~~~~~~~~~~-~v-----~sl~~s~~g~~l~~~sG~~d---g~I~Iwd~~~-~~~~~~l~--~h~~~V~~l~~spdg~~L 569 (609)
+.+.++..|. .+ ....|++++.++++++ +++ ++|+|||++. ..++..+. .+.+.+......++|.++
T Consensus 200 ~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG-~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 200 EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTG-FSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEE-cCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 9998887664 22 2234568888888864 332 4899999985 45555443 233444444445568899
Q ss_pred EEEECCCCEEEEEcCCCc
Q psy4876 570 LSAGADETLRLWKIFEKV 587 (609)
Q Consensus 570 ~s~s~Dg~I~iWdl~~~~ 587 (609)
++|+.|++|++|++..+.
T Consensus 279 lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred EEEECCCeEEEEEccCCc
Confidence 999999999999997653
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-23 Score=188.84 Aligned_cols=294 Identities=18% Similarity=0.262 Sum_probs=222.3
Q ss_pred cCCceeEEEEEecCCC-eEEEEc-CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEE
Q psy4876 266 IQNDYYLNLIDWSHFN-VLAVAL-GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVA 342 (609)
Q Consensus 266 ~~~~~~v~~l~wsp~~-lla~s~-dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~ 342 (609)
+.+...|..++|+|.| +.|++. ..+.+|-....-. .+...+..... .......... |.+.|.|.+
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~--------~~r~~hea~~~----pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALI--------DLRHAHEAAKQ----PPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEcccccc--------CcccccccccC----CCeEEeeeccccCccEEEEE
Confidence 3445568999999986 777655 4677776443210 00000000000 1111112223 899999999
Q ss_pred EccCCCEEEEEeCCCeEEEEeCCCCee-----EEEecCCCCceEEEEe-c-----CCEEEEEe-cCCeEEEEEcCCCCee
Q psy4876 343 WIQEGYMLGVGTSLGTVQLWDVSAKKK-----CRTMDGHDVRVGALAW-N-----TYILSSGS-RCGNIVHHDVRSRDHK 410 (609)
Q Consensus 343 ~spdg~~Lasgs~dg~I~iwd~~~~~~-----~~~l~~h~~~V~~l~~-~-----~~~L~sgs-~dg~I~iwd~~~~~~~ 410 (609)
|+|+|.+||+|+.|.+|++.-.+...+ -..+.-|.+.|..++| + +.+|++++ .|..|++-|...+ +.
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g-~~ 175 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG-QG 175 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC-Cc
Confidence 999999999999999999987654332 2356679999999999 2 46777665 4778888898887 47
Q ss_pred EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-------CcccEEEEEEcCCCCcEEE
Q psy4876 411 VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-------HQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 411 ~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-------h~~~V~~l~~sp~~~~lla 483 (609)
.+.+.+|++.|.++ ++-+|-+|++|++|.+|++||++-. .++..+.. ....|.+++..|.| .||+
T Consensus 176 ~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~------~~v~~l~~~~~~~glessavaav~vdpsg-rll~ 247 (350)
T KOG0641|consen 176 FHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVN------SCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLA 247 (350)
T ss_pred ceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeecc------ceeeeccCcccCCCcccceeEEEEECCCc-ceee
Confidence 88899999999876 3335889999999999999999876 44444421 23679999999988 6888
Q ss_pred EEeccCCCeEEEEECCCCceeEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC----ceEEEEeCCCCCEE
Q psy4876 484 SGGGTADRHIYFWNVSSGACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL----VKVAELHGHSARVL 558 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t~~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~----~~~~~l~~h~~~V~ 558 (609)
+|. .|....+||++.+..++.+..++ .|.++.|+|...++++++ .|..|++-|+... -.+.....|.+.+.
T Consensus 248 sg~--~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~s--yd~~ikltdlqgdla~el~~~vv~ehkdk~i 323 (350)
T KOG0641|consen 248 SGH--ADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS--YDMKIKLTDLQGDLAHELPIMVVAEHKDKAI 323 (350)
T ss_pred ecc--CCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEec--ccceEEEeecccchhhcCceEEEEeccCceE
Confidence 874 89999999999999999997664 899999999999999954 8999999998532 23344567999999
Q ss_pred EEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 559 NLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 559 ~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
.+.|+|..-.+++.+.|.++.+|-+.
T Consensus 324 ~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 324 QCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEecCccceeeeccCcceEEEeccC
Confidence 99999999999999999999999864
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-25 Score=216.46 Aligned_cols=249 Identities=17% Similarity=0.249 Sum_probs=211.2
Q ss_pred eec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC---eeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEc
Q psy4876 331 DLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAK---KKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDV 404 (609)
Q Consensus 331 ~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~---~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~ 404 (609)
.+. |.+.|.-+.||++|+|||+++.|.+..||++... +...++.+|..+|.-+.| +.++|++++.|..+.+||+
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV 298 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence 344 8999999999999999999999999999988654 457889999999999999 5689999999999999999
Q ss_pred CCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCc-ccEEEEEEcCCCCcEEE
Q psy4876 405 RSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQ-AAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 405 ~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~lla 483 (609)
.+++.....-.+|...+.+++|.|||..+++|+.|+.|..||++.. .+...++-. ..|.+++..+||..+++
T Consensus 299 ~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-------~~~~W~gvr~~~v~dlait~Dgk~vl~ 371 (519)
T KOG0293|consen 299 DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-------ILGNWEGVRDPKVHDLAITYDGKYVLL 371 (519)
T ss_pred CcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-------hhhcccccccceeEEEEEcCCCcEEEE
Confidence 9986333333345688999999999999999999999999999853 333333322 45899999999999998
Q ss_pred EEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCC--EEEEE
Q psy4876 484 SGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSAR--VLNLA 561 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~--V~~l~ 561 (609)
++ .|..|++++..+......+..+.+++++..+.+++++++ .-.+..|++||+.....+..+.||... |..-|
T Consensus 372 v~---~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv--nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 372 VT---VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALV--NLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred Ee---cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEE--EcccCeeEEeecchhhHHHHhhcccccceEEEec
Confidence 87 799999999998888888888999999999999999998 458999999999988888888898754 44556
Q ss_pred EeC-CCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 562 MSP-DETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 562 ~sp-dg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
|.- +..++++|++|+.|+||+...+.....
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~ 477 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAV 477 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCCceeEe
Confidence 654 558999999999999999998876543
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-23 Score=224.19 Aligned_cols=229 Identities=13% Similarity=0.250 Sum_probs=173.4
Q ss_pred eeeeec-CCCCeEEEEEccC-CCEEEEEeCCCeEEEEeCCCCe--------eEEEecCCCCceEEEEecC---CEEEEEe
Q psy4876 328 HLMDLE-GNENVCSVAWIQE-GYMLGVGTSLGTVQLWDVSAKK--------KCRTMDGHDVRVGALAWNT---YILSSGS 394 (609)
Q Consensus 328 ~l~~~~-h~~~V~~v~~spd-g~~Lasgs~dg~I~iwd~~~~~--------~~~~l~~h~~~V~~l~~~~---~~L~sgs 394 (609)
.+..+. |.+.|.+++|+|+ +.+||+|+.||.|+|||+.++. .+..+.+|...|.+++|++ .+|++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 455666 9999999999997 7999999999999999997642 3456789999999999963 3567999
Q ss_pred cCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEE--
Q psy4876 395 RCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI-- 472 (609)
Q Consensus 395 ~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l-- 472 (609)
.|++|++||++++. .+..+. |...|.+++|+|+|.+|++++.|+.|+|||++++ ..+..+.+|.+.+.+.
T Consensus 146 ~DgtIrIWDl~tg~-~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg------~~i~tl~gH~g~~~s~~v 217 (568)
T PTZ00420 146 FDSFVNIWDIENEK-RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ------EIASSFHIHDGGKNTKNI 217 (568)
T ss_pred CCCeEEEEECCCCc-EEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC------cEEEEEecccCCceeEEE
Confidence 99999999999874 444454 6678999999999999999999999999999988 6778888898765433
Q ss_pred ---EEcCCCCcEEEEEec-cCCCeEEEEECCC-CceeEEEcCCCC--eEEEEEc-CCCCeEEEEEecCCCeEEEEECCCC
Q psy4876 473 ---AWCPWSPNVLASGGG-TADRHIYFWNVSS-GACLDSIDTKSQ--VCALLWN-SDYKELVSAHGFAQNQLIIWKYPSL 544 (609)
Q Consensus 473 ---~~sp~~~~llasggG-s~Dg~I~iwd~~t-~~~~~~~~~~~~--v~sl~~s-~~g~~l~~~sG~~dg~I~Iwd~~~~ 544 (609)
.|++++..++++|.. ..++.|+|||+++ ++++..+..+.. +....|. +++.++++ |..|+.|++|++..+
T Consensus 218 ~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ls--GkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 218 WIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLI--GKGDGNCRYYQHSLG 295 (568)
T ss_pred EeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEE--EECCCeEEEEEccCC
Confidence 344777655655520 1125899999994 666766654432 2223444 44666666 457999999999776
Q ss_pred ceEEEEe--CCCCCEEEEEEeCCCC
Q psy4876 545 VKVAELH--GHSARVLNLAMSPDET 567 (609)
Q Consensus 545 ~~~~~l~--~h~~~V~~l~~spdg~ 567 (609)
. +..+. .+..++.+++|.|+..
T Consensus 296 ~-~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 296 S-IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred c-EEeecccccCCCccceEEccccc
Confidence 4 33332 2567888999999743
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=208.49 Aligned_cols=296 Identities=20% Similarity=0.274 Sum_probs=229.3
Q ss_pred eeEEEEEecCCC-eE-EEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFN-VL-AVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~-ll-a~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
..+.+-+||+|| ++ +|+.|..|+|.|++.--. -+ .-.+......+ ...-.+.++- |.+.|+++.|+|.
T Consensus 113 ~~cR~aafs~DG~lvATGsaD~SIKildvermla------ks-~~~em~~~~~q--a~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVATGSADASIKILDVERMLA------KS-KPKEMISGDTQ--ARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred cceeeeeeCCCCcEEEccCCcceEEEeehhhhhh------hc-chhhhccCCcc--cCCceEeehhhccCcccceeecch
Confidence 347889999998 44 488899999999984100 00 00000000000 1112334444 9999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEec--CCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEE--EEccCCCC
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMD--GHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVA--LLQNHTQE 420 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~--~~~~h~~~ 420 (609)
...|++|+.|++|++||.......+.++ ....+|.+|.|+ |.+|+.|....++++||+.+.+..+. .-.+|++.
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 9999999999999999997653333222 245689999994 79999999999999999998642222 23479999
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec-CCc-ccEEEEEEcCCCCcEEEEEeccCCCeEEEEEC
Q psy4876 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS-RHQ-AAVKAIAWCPWSPNVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~-~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~ 498 (609)
|+++.+++.|++.++|+.||.|+|||--++ +++.++. .|. ..|.+..|..+++++|.+| .|..+++|.+
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~------rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG---~DS~vkLWEi 334 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSN------RCVRTIGNAHGGSEVCSAVFTKNGKYILSSG---KDSTVKLWEI 334 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccH------HHHHHHHhhcCCceeeeEEEccCCeEEeecC---Ccceeeeeee
Confidence 999999999999999999999999998877 6776664 343 4789999999998888776 8999999999
Q ss_pred CCCceeEEEcCCC------CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEE-eCCCCCEEEEEEeCCCCEEEE
Q psy4876 499 SSGACLDSIDTKS------QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL-HGHSARVLNLAMSPDETTVLS 571 (609)
Q Consensus 499 ~t~~~~~~~~~~~------~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~L~s 571 (609)
.++.++..+.+.+ .-+...|+....+++.. ....+.++-||.++...+..+ .+|.+.+..+.-||.+.-+++
T Consensus 335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~p-DEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmT 413 (430)
T KOG0640|consen 335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFP-DEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMT 413 (430)
T ss_pred cCCceEEEEecCCcccchhhhhhhhhcCccceEEcc-ccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceee
Confidence 9999999887542 23556788888887775 335788999999998777655 589999999999999999999
Q ss_pred EECCCCEEEEEcC
Q psy4876 572 AGADETLRLWKIF 584 (609)
Q Consensus 572 ~s~Dg~I~iWdl~ 584 (609)
|+.|-.+|+|--.
T Consensus 414 csdD~raRFWyrr 426 (430)
T KOG0640|consen 414 CSDDFRARFWYRR 426 (430)
T ss_pred ecccceeeeeeec
Confidence 9999999999643
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=200.95 Aligned_cols=264 Identities=16% Similarity=0.199 Sum_probs=206.0
Q ss_pred eEEEEEecCC--CeE-EEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHF--NVL-AVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~--~ll-a~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
.|..|+|||. +++ |++.|++|++|+++.. +.........|.++|.+++|+.||
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~------------------------g~~~~ka~~~~~~PvL~v~Wsddg 84 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNS------------------------GQLVPKAQQSHDGPVLDVCWSDDG 84 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecC------------------------CcccchhhhccCCCeEEEEEccCC
Confidence 4778999994 455 7889999999999872 233332233389999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
..+++|+.|+.+++||+.++ .+..+..|.++|.++.|- -..|++|+.|.+|+.||.+.. .++.++. -.+.|.+
T Consensus 85 skVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~-LPeRvYa 161 (347)
T KOG0647|consen 85 SKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQ-LPERVYA 161 (347)
T ss_pred ceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC-Ceeeeee-ccceeee
Confidence 99999999999999999998 566777899999999992 258899999999999999986 4566655 3455666
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC 503 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~ 503 (609)
+..- ..+++++..++.|.+|+++.+-.. .......-.-.++||+..++.... +.| +..|.+.|..+..+..
T Consensus 162 ~Dv~--~pm~vVata~r~i~vynL~n~~te----~k~~~SpLk~Q~R~va~f~d~~~~-alG--siEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 162 ADVL--YPMAVVATAERHIAVYNLENPPTE----FKRIESPLKWQTRCVACFQDKDGF-ALG--SIEGRVAIQYIDDPNP 232 (347)
T ss_pred hhcc--CceeEEEecCCcEEEEEcCCCcch----hhhhcCcccceeeEEEEEecCCce-Eee--eecceEEEEecCCCCc
Confidence 6553 457888999999999999876221 111111123457899998887655 554 5899999999987633
Q ss_pred e--EEEcCC----------CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEE
Q psy4876 504 L--DSIDTK----------SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571 (609)
Q Consensus 504 ~--~~~~~~----------~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s 571 (609)
. .+|..| ..|.+|+|+|....|+++. .||+..+||-....+++....|..+|++++|+.+|.++|-
T Consensus 233 ~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG--sDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 233 KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG--SDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAY 310 (347)
T ss_pred cCceeEEEeccCCCCCCceEEecceEeecccceEEEec--CCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEE
Confidence 2 222221 2578999999999999974 7999999999999999998899999999999999998875
Q ss_pred E
Q psy4876 572 A 572 (609)
Q Consensus 572 ~ 572 (609)
+
T Consensus 311 A 311 (347)
T KOG0647|consen 311 A 311 (347)
T ss_pred E
Confidence 5
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-24 Score=232.01 Aligned_cols=240 Identities=26% Similarity=0.377 Sum_probs=214.2
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEE-ecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCee
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRT-MDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
+...+.+..|. +.++++++.+++|++||..++..+.. +.+|.+.|.++++. +.+|++|+.|.++++||+.++ .+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg-~C 283 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG-EC 283 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC-cE
Confidence 56778888888 56888999999999999999998888 99999999999997 899999999999999999887 58
Q ss_pred EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCC
Q psy4876 411 VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD 490 (609)
Q Consensus 411 ~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~D 490 (609)
...+.+|...|.++... +.++++|+.|.+|++|++.++ ..+..+.+|.++|.++..+ ..++++| +.|
T Consensus 284 ~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~------~~l~l~~~h~~~V~~v~~~---~~~lvsg--s~d 350 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG------ACLNLLRGHTGPVNCVQLD---EPLLVSG--SYD 350 (537)
T ss_pred EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCc------ceEEEeccccccEEEEEec---CCEEEEE--ecC
Confidence 99999999999988875 457888999999999999988 7889998899999999997 3577776 599
Q ss_pred CeEEEEECCCCceeEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC-ceEEEEeCCCCCEEEEEEeCCCCE
Q psy4876 491 RHIYFWNVSSGACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL-VKVAELHGHSARVLNLAMSPDETT 568 (609)
Q Consensus 491 g~I~iwd~~t~~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~ 568 (609)
+.|++||+.+++++.++.+|. .|.++.+... ..+++ |..|+.|++||+.+. +++..+.+|.+.|.++.+ .+++
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~S--gs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~ 425 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLS--GSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNF 425 (537)
T ss_pred ceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEe--eeeccceEeecCCchhhhhhhhcCCccccccccc--ccce
Confidence 999999999999999999875 8999988776 67777 558999999999999 999999999999977665 6889
Q ss_pred EEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 569 VLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 569 L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
|++++.|++|++||..+++..+..+.
T Consensus 426 Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 426 LVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred eEeccccccEEEeecccCceeeeecc
Confidence 99999999999999999888766555
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=219.64 Aligned_cols=270 Identities=19% Similarity=0.279 Sum_probs=223.0
Q ss_pred eEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEE-EEEcc-C
Q psy4876 271 YLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCS-VAWIQ-E 346 (609)
Q Consensus 271 ~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~-v~~sp-d 346 (609)
.|..++..++. +++++.||++++|+-.. +.......+. |.+.|.+ +++.+ +
T Consensus 16 DVr~v~~~~~~~i~s~sRd~t~~vw~~~~-------------------------~~~l~~~~~~~~~g~i~~~i~y~e~~ 70 (745)
T KOG0301|consen 16 DVRAVAVTDGVCIISGSRDGTVKVWAKKG-------------------------KQYLETHAFEGPKGFIANSICYAESD 70 (745)
T ss_pred chheeEecCCeEEeecCCCCceeeeeccC-------------------------cccccceecccCcceeeccceecccc
Confidence 34566666665 77788899999999766 4444444555 6676766 88875 4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
+-.|++|+.|++|.+|.......+.++.+|...|.+++. ....+++|+.|.++++|-... ....+.+|...|.+++
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~ 147 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVA 147 (745)
T ss_pred CcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh---hhcccCCcchheeeee
Confidence 456889999999999999999999999999999999996 344589999999999998764 4566999999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeE
Q psy4876 426 WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLD 505 (609)
Q Consensus 426 ~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~ 505 (609)
.-|++ .+++|+.|.+|++|.-. +.+.++.+|...|+.+++-+++ .++.++ .||.|++|++ +|+++.
T Consensus 148 ~l~e~-~~vTgsaDKtIklWk~~--------~~l~tf~gHtD~VRgL~vl~~~-~flScs---NDg~Ir~w~~-~ge~l~ 213 (745)
T KOG0301|consen 148 SLPEN-TYVTGSADKTIKLWKGG--------TLLKTFSGHTDCVRGLAVLDDS-HFLSCS---NDGSIRLWDL-DGEVLL 213 (745)
T ss_pred ecCCC-cEEeccCcceeeeccCC--------chhhhhccchhheeeeEEecCC-CeEeec---CCceEEEEec-cCceee
Confidence 99988 89999999999999863 6789999999999999999975 345443 8999999999 678877
Q ss_pred EEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 506 SIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 506 ~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
...+| .-+.++....++..+++++ +|++++||+.. ++...+.-....|+++.+-++|. |++|+.||.||||...
T Consensus 214 ~~~ghtn~vYsis~~~~~~~Ivs~g--EDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 214 EMHGHTNFVYSISMALSDGLIVSTG--EDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred eeeccceEEEEEEecCCCCeEEEec--CCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 77665 5799999888888888753 89999999987 66777765556899999998887 7788999999999987
Q ss_pred CCc
Q psy4876 585 EKV 587 (609)
Q Consensus 585 ~~~ 587 (609)
...
T Consensus 289 k~R 291 (745)
T KOG0301|consen 289 KDR 291 (745)
T ss_pred ccc
Confidence 443
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-24 Score=227.80 Aligned_cols=241 Identities=21% Similarity=0.394 Sum_probs=205.0
Q ss_pred CeEEEEEcc-CCCEEEEEeCCCeEEEEeCCC---CeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCe
Q psy4876 337 NVCSVAWIQ-EGYMLGVGTSLGTVQLWDVSA---KKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDH 409 (609)
Q Consensus 337 ~V~~v~~sp-dg~~Lasgs~dg~I~iwd~~~---~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~ 409 (609)
.+..|.|.. +.++||+++.+|.|.+||+.. .+++..+..|...+.++.|+ +++|++|+.||+|++||++...
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~- 167 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK- 167 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-
Confidence 456788885 358999999999999999987 56778899999999999994 7999999999999999999874
Q ss_pred eEEEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEecc
Q psy4876 410 KVALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGT 488 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs 488 (609)
...++.+....|..++|+| .+..|+++.+.|.+.+||++... ++...+..|.++|.|+.|+|++ .+||+||
T Consensus 168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~-----r~~~k~~AH~GpV~c~nwhPnr-~~lATGG-- 239 (839)
T KOG0269|consen 168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD-----RCEKKLTAHNGPVLCLNWHPNR-EWLATGG-- 239 (839)
T ss_pred ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch-----hHHHHhhcccCceEEEeecCCC-ceeeecC--
Confidence 6677778889999999999 77899999999999999999874 6788899999999999999954 7899986
Q ss_pred CCCeEEEEECCCCc--eeEEEcCCCCeEEEEEcCCCCeEE-EEEecCCCeEEEEECCCC-ceEEEEeCCCCCEEEEEEeC
Q psy4876 489 ADRHIYFWNVSSGA--CLDSIDTKSQVCALLWNSDYKELV-SAHGFAQNQLIIWKYPSL-VKVAELHGHSARVLNLAMSP 564 (609)
Q Consensus 489 ~Dg~I~iwd~~t~~--~~~~~~~~~~v~sl~~s~~g~~l~-~~sG~~dg~I~Iwd~~~~-~~~~~l~~h~~~V~~l~~sp 564 (609)
.|+.|+|||+.+++ .+.++.+..+|..+.|-|...+.+ +++-..|-.|+|||++.. -+...+..|...++.++|-.
T Consensus 240 RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 240 RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred CCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence 99999999998654 567778888999999999987654 444446889999999754 45677888999999999965
Q ss_pred -CCCEEEEEECCCCEEEEEcCCC
Q psy4876 565 -DETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 565 -dg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
|-..|.+++.||+|....+.+.
T Consensus 320 ~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 320 GDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred CCceeeEeecCccHHHHhhhhcc
Confidence 5568889999998876555443
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=231.49 Aligned_cols=247 Identities=25% Similarity=0.377 Sum_probs=211.4
Q ss_pred CCCCeEEEEEccCCCEEEEEe--CCCeEEEEeCCC------------CeeEEEecCCCCceEEEEe--cCCEEEEEecCC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGT--SLGTVQLWDVSA------------KKKCRTMDGHDVRVGALAW--NTYILSSGSRCG 397 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs--~dg~I~iwd~~~------------~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg 397 (609)
++..|.++..+|+|..+|+|+ .||.++||+.+. .+.+.++..|.+.|.|+.| ||.+||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 456799999999999999999 899999998752 2456778889999999999 799999999999
Q ss_pred eEEEEEcCC------C-----------CeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceE
Q psy4876 398 NIVHHDVRS------R-----------DHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIH 460 (609)
Q Consensus 398 ~I~iwd~~~------~-----------~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~ 460 (609)
.|.||+... . ...+..+.+|...|..++|+|++.+||+++.|++|.||+..+. ..+.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF------~~~~ 165 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF------ELLK 165 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc------eeee
Confidence 999999872 1 1356778899999999999999999999999999999999988 7899
Q ss_pred eecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC-------CCeEEEEEcCCCCeEEEEEecCC
Q psy4876 461 SLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK-------SQVCALLWNSDYKELVSAHGFAQ 533 (609)
Q Consensus 461 ~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-------~~v~sl~~s~~g~~l~~~sG~~d 533 (609)
.+.+|.+.|..+.|.|-|+ ++|+- +.|++|+||++.+..+.+.+... .....+.|+|||++|++.++...
T Consensus 166 vl~~H~s~VKGvs~DP~Gk-y~ASq--sdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~ 242 (942)
T KOG0973|consen 166 VLRGHQSLVKGVSWDPIGK-YFASQ--SDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG 242 (942)
T ss_pred eeecccccccceEECCccC-eeeee--cCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence 9999999999999999996 55554 48999999998887777777532 35789999999999999765443
Q ss_pred --CeEEEEECCCCceEEEEeCCCCCEEEEEEeCC-----CC------------EEEEEECCCCEEEEEcCCCccc
Q psy4876 534 --NQLIIWKYPSLVKVAELHGHSARVLNLAMSPD-----ET------------TVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 534 --g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spd-----g~------------~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
..+.|.+-.+++.-..|.||.+++.++.|+|. .+ .+|+|+.|++|-||......+.
T Consensus 243 ~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 243 GKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred CcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 46889998888888899999999999999981 11 6789999999999998665554
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-24 Score=213.59 Aligned_cols=249 Identities=22% Similarity=0.402 Sum_probs=195.7
Q ss_pred ceeEEEEEecCCC--eEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSHFN--VLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~s 344 (609)
+-.||.+.+-|.+ ++| .+.++.|+|||.......... .+.+..-..+. |...-++++|+
T Consensus 124 ~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~-----------------~~~~~Pdl~L~gH~~eg~glsWn 186 (422)
T KOG0264|consen 124 DGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA-----------------SGECRPDLRLKGHEKEGYGLSWN 186 (422)
T ss_pred CccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc-----------------cccCCCceEEEeecccccccccc
Confidence 3345555555653 454 566789999999874221100 01222333444 77778889999
Q ss_pred cCC-CEEEEEeCCCeEEEEeCCCCe-------eEEEecCCCCceEEEEe---cCCEEEEEecCCeEEEEEcCC-CCeeEE
Q psy4876 345 QEG-YMLGVGTSLGTVQLWDVSAKK-------KCRTMDGHDVRVGALAW---NTYILSSGSRCGNIVHHDVRS-RDHKVA 412 (609)
Q Consensus 345 pdg-~~Lasgs~dg~I~iwd~~~~~-------~~~~l~~h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~-~~~~~~ 412 (609)
+.. -.|++|+.|+.|.+||+.... ....+.+|...|..++| +..+|++++.|+.+.|||+|+ ......
T Consensus 187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc
Confidence 965 678899999999999997542 34678899999999999 568999999999999999996 335667
Q ss_pred EEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 413 LLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 413 ~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
...+|.++|.|++|+| ++..||+|+.|++|.+||+++.. ++++.+.+|...|.+|.|+|....+|+++| .|+
T Consensus 267 ~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~-----~~lh~~e~H~dev~~V~WSPh~etvLASSg--~D~ 339 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN-----KPLHTFEGHEDEVFQVEWSPHNETVLASSG--TDR 339 (422)
T ss_pred cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-----cCceeccCCCcceEEEEeCCCCCceeEecc--cCC
Confidence 7889999999999999 67789999999999999999885 689999999999999999999999999986 899
Q ss_pred eEEEEECCCCcee--------------EEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q psy4876 492 HIYFWNVSSGACL--------------DSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 492 ~I~iwd~~t~~~~--------------~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~ 542 (609)
.+.+||+..-... ....+| ..|..+.|+|+..++++.. .+|+.+.||+..
T Consensus 340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sv-aeDN~LqIW~~s 404 (422)
T KOG0264|consen 340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASV-AEDNILQIWQMA 404 (422)
T ss_pred cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEe-cCCceEEEeecc
Confidence 9999999742211 122222 4799999999999988764 489999999975
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-23 Score=208.53 Aligned_cols=280 Identities=20% Similarity=0.285 Sum_probs=222.9
Q ss_pred ceeEEEEEecCC-CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 269 DYYLNLIDWSHF-NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 269 ~~~v~~l~wsp~-~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
.-.|..+..|.. .-+-.+..|.|+|||+....+. ..+..+--+..+..|.++...|||
T Consensus 419 GEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k---------------------~PvsqLdcl~rdnyiRSckL~pdg 477 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNK---------------------SPVSQLDCLNRDNYIRSCKLLPDG 477 (705)
T ss_pred CcEEEEEEecCCcceeEecCCCeEEEeeccCCCCC---------------------CccccccccCcccceeeeEecCCC
Confidence 345777888765 4555667789999999863111 112222222367899999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCee--EEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKK--CRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
+.|++|+.-.++.|||+..... ...+......+.+++. |.++.++++.||.|.|||+... ..+..+++|.+.+.|
T Consensus 478 rtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGasc 556 (705)
T KOG0639|consen 478 RTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASC 556 (705)
T ss_pred ceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccCCCCCcee
Confidence 9999999999999999986543 3334433344555555 5789999999999999999985 689999999999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC 503 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~ 503 (609)
|.+++||..|-+|+-|++|+.||++.+ ..+... .....|.++-.||.+.++++ | ...+.+.|......+.
T Consensus 557 Idis~dGtklWTGGlDntvRcWDlreg------rqlqqh-dF~SQIfSLg~cP~~dWlav-G--Mens~vevlh~skp~k 626 (705)
T KOG0639|consen 557 IDISKDGTKLWTGGLDNTVRCWDLREG------RQLQQH-DFSSQIFSLGYCPTGDWLAV-G--MENSNVEVLHTSKPEK 626 (705)
T ss_pred EEecCCCceeecCCCccceeehhhhhh------hhhhhh-hhhhhheecccCCCccceee-e--cccCcEEEEecCCccc
Confidence 999999999999999999999999987 333222 23567999999999976555 3 6889998888776555
Q ss_pred eEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEc
Q psy4876 504 LDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKI 583 (609)
Q Consensus 504 ~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl 583 (609)
...-.+.+-|.++.|.+.|+++++.. .|+-+..|..+-|..+...+ ....|+++.+|-|.++|+||+.|....||.+
T Consensus 627 yqlhlheScVLSlKFa~cGkwfvStG--kDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 627 YQLHLHESCVLSLKFAYCGKWFVSTG--KDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeecccccEEEEEEecccCceeeecC--chhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 55555667899999999999999853 89999999999999998875 5678999999999999999999999988876
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-22 Score=203.24 Aligned_cols=272 Identities=15% Similarity=0.174 Sum_probs=202.7
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEE-EEEeCCCeEE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYML-GVGTSLGTVQ 360 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~L-asgs~dg~I~ 360 (609)
+++.+.|+.|++||..+ +.... .+.+...+.+++|+|+|..+ ++++.++.|+
T Consensus 4 ~~s~~~d~~v~~~d~~t-------------------------~~~~~--~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~ 56 (300)
T TIGR03866 4 YVSNEKDNTISVIDTAT-------------------------LEVTR--TFPVGQRPRGITLSKDGKLLYVCASDSDTIQ 56 (300)
T ss_pred EEEecCCCEEEEEECCC-------------------------CceEE--EEECCCCCCceEECCCCCEEEEEECCCCeEE
Confidence 45678899999999987 54333 33333447789999999876 5667889999
Q ss_pred EEeCCCCeeEEEecCCCCceEEEEe--cCCEEEE-EecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEe
Q psy4876 361 LWDVSAKKKCRTMDGHDVRVGALAW--NTYILSS-GSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGG 437 (609)
Q Consensus 361 iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~s-gs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs 437 (609)
+||..+++.+..+..+.. +..++| +++.+++ ++.++.|.+||+++. ..+..+. +...+.+++|+|+|.++++++
T Consensus 57 ~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~-~~~~~~~-~~~~~~~~~~~~dg~~l~~~~ 133 (300)
T TIGR03866 57 VIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETR-KVLAEIP-VGVEPEGMAVSPDGKIVVNTS 133 (300)
T ss_pred EEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCC-eEEeEee-CCCCcceEEECCCCCEEEEEe
Confidence 999999888877765443 456777 4565654 456899999999875 3455454 334578899999999999988
Q ss_pred CCC-cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC------
Q psy4876 438 NDN-LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK------ 510 (609)
Q Consensus 438 ~Dg-~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~------ 510 (609)
.++ .+.+||..++ .....+. ....+.+++|+|++..+++++ ..++.|++||+.+++++..+...
T Consensus 134 ~~~~~~~~~d~~~~------~~~~~~~-~~~~~~~~~~s~dg~~l~~~~--~~~~~v~i~d~~~~~~~~~~~~~~~~~~~ 204 (300)
T TIGR03866 134 ETTNMAHFIDTKTY------EIVDNVL-VDQRPRFAEFTADGKELWVSS--EIGGTVSVIDVATRKVIKKITFEIPGVHP 204 (300)
T ss_pred cCCCeEEEEeCCCC------eEEEEEE-cCCCccEEEECCCCCEEEEEc--CCCCEEEEEEcCcceeeeeeeeccccccc
Confidence 765 5778898776 3333332 223457899999997776654 36899999999999887766422
Q ss_pred --CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEE-ECCCCEEEEEcCCCc
Q psy4876 511 --SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSA-GADETLRLWKIFEKV 587 (609)
Q Consensus 511 --~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~-s~Dg~I~iWdl~~~~ 587 (609)
.....++|+++++.++++.+ .++.|.+||..+++.+..+. +...+.+++|+|+|++|+++ +.++.|++||+.+++
T Consensus 205 ~~~~~~~i~~s~dg~~~~~~~~-~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 205 EAVQPVGIKLTKDGKTAFVALG-PANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred ccCCccceEECCCCCEEEEEcC-CCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 13457899999999776543 56789999999888776653 44578999999999999886 468999999999988
Q ss_pred cchhhhh
Q psy4876 588 KSKKKEI 594 (609)
Q Consensus 588 ~~~k~~~ 594 (609)
.....+.
T Consensus 283 ~~~~~~~ 289 (300)
T TIGR03866 283 VIKSIKV 289 (300)
T ss_pred EEEEEEc
Confidence 6655444
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.2e-25 Score=216.91 Aligned_cols=248 Identities=19% Similarity=0.288 Sum_probs=214.4
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe--eEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCe
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK--KCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDH 409 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~ 409 (609)
|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+.+.|+ ++.+++++.|+.+++|++... .
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~-r 252 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL-R 252 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch-h
Confidence 88999999999999999999999999999998766 778888999999999994 789999999999999999987 5
Q ss_pred eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC
Q psy4876 410 KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA 489 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~ 489 (609)
...++.+|++.|+++.|......+++|+.|.+|++||+... .+..++. ....+.+|+.. ...+++| -.
T Consensus 253 ~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~------~C~kt~l-~~S~cnDI~~~---~~~~~Sg--H~ 320 (459)
T KOG0288|consen 253 LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA------YCSKTVL-PGSQCNDIVCS---ISDVISG--HF 320 (459)
T ss_pred hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh------heecccc-ccccccceEec---ceeeeec--cc
Confidence 78899999999999999987777999999999999999986 4554443 23345555554 2456666 48
Q ss_pred CCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC----CCCEEEEEEeCC
Q psy4876 490 DRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH----SARVLNLAMSPD 565 (609)
Q Consensus 490 Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h----~~~V~~l~~spd 565 (609)
|++|++||+++..+..++..++.|+++..+.++..+++++ .|.++.++|+++.+....+.+. ....+.+.|||+
T Consensus 321 DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsss--RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSS--RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred ccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeec--CCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence 9999999999999999999999999999999999999964 8999999999998887776532 234889999999
Q ss_pred CCEEEEEECCCCEEEEEcCCCccchhhhhhc
Q psy4876 566 ETTVLSAGADETLRLWKIFEKVKSKKKEIKN 596 (609)
Q Consensus 566 g~~L~s~s~Dg~I~iWdl~~~~~~~k~~~~~ 596 (609)
+.|+++||.||.|+||++++++.+++.....
T Consensus 399 ~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~ 429 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFTGKLEKVLSLST 429 (459)
T ss_pred CceeeeccCCCcEEEEEccCceEEEEeccCC
Confidence 9999999999999999999999887766543
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=210.40 Aligned_cols=274 Identities=17% Similarity=0.231 Sum_probs=212.6
Q ss_pred eeEEEEEecCCC---eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 270 YYLNLIDWSHFN---VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 270 ~~v~~l~wsp~~---lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
..|.||+=+|.. +++|+.||.|+|||+.. . .++..+. |.+.|..+++..
T Consensus 67 dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-------------------------R--~~~~~f~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 67 DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-------------------------R--ECIRTFKAHEGLVRGICVTQ 119 (433)
T ss_pred cccchhhcCcchhhhhhccccCceEEEEehhh-------------------------h--hhhheeecccCceeeEEecc
Confidence 348889999874 77799999999999976 3 3455666 999999999987
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
..+++++.|.+|+.|-++. ..++++.+ ...+..|.- .+..+++++. .|.|||..-. .++..+.-....|.+
T Consensus 120 --~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~-~Pv~smswG~Dti~s 192 (433)
T KOG0268|consen 120 --TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD-NPVSSMSWGADSISS 192 (433)
T ss_pred --cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccC-CccceeecCCCceeE
Confidence 6777889999999999875 35555543 334444443 3567777775 5999999765 478888877889999
Q ss_pred EEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC-
Q psy4876 424 LKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG- 501 (609)
Q Consensus 424 l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~- 501 (609)
+.|+| ....|++|+.|+.|.+||++++ .+++.+.. .-.-..|+|+|. ...+++| ++|..++.||++.-
T Consensus 193 vkfNpvETsILas~~sDrsIvLyD~R~~------~Pl~KVi~-~mRTN~IswnPe-afnF~~a--~ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 193 VKFNPVETSILASCASDRSIVLYDLRQA------SPLKKVIL-TMRTNTICWNPE-AFNFVAA--NEDHNLYTYDMRNLS 262 (433)
T ss_pred EecCCCcchheeeeccCCceEEEecccC------Cccceeee-eccccceecCcc-ccceeec--cccccceehhhhhhc
Confidence 99999 4457888889999999999998 56655532 233478999994 4666665 59999999999854
Q ss_pred ceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC-CCCCEEEEEEeCCCCEEEEEECCCCEE
Q psy4876 502 ACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG-HSARVLNLAMSPDETTVLSAGADETLR 579 (609)
Q Consensus 502 ~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~s~s~Dg~I~ 579 (609)
.++.....+ +.|.++.|+|.|+++++ |+-|.+|+||.+..+..-..+.. -...|.|+.||-|.+++++|+.|+.||
T Consensus 263 ~p~~v~~dhvsAV~dVdfsptG~Efvs--gsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 263 RPLNVHKDHVSAVMDVDFSPTGQEFVS--GSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred ccchhhcccceeEEEeccCCCcchhcc--ccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCccee
Confidence 345555444 68999999999999999 55899999999987755433311 124699999999999999999999999
Q ss_pred EEEcCCCccc
Q psy4876 580 LWKIFEKVKS 589 (609)
Q Consensus 580 iWdl~~~~~~ 589 (609)
+|.-...++.
T Consensus 341 lWka~Asekl 350 (433)
T KOG0268|consen 341 LWKAKASEKL 350 (433)
T ss_pred eeecchhhhc
Confidence 9998766554
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=221.31 Aligned_cols=322 Identities=18% Similarity=0.254 Sum_probs=245.1
Q ss_pred hcCCCCCCceEEeecCCCCCCC---CCccchhhhhhhccccCCccceeeeeeeecccchhhhhhhhhhHHhhhhhhheee
Q psy4876 146 VHGKDIQKSRVLAFQNKAPPPP---DGYQNSLKVALNSAITSSPEMKIWKISVHQNVKSVKLCQNLFMERIFKSLEYLLF 222 (609)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~e~~~~~~~~~~~ 222 (609)
+++..++.+|+|+++++|..|| ..|......+. +++.|+..+.+++.++.++++|.+..-
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~il----sa~~Drt~r~fs~~~e~~~~~l~~~~~------------- 378 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFIL----SAKQDRTLRSFSVISESQSQELGQLHN------------- 378 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEE----ecccCcchhhhhhhHHHHhHhhccccc-------------
Confidence 3444445689999999999999 55767666555 899999999999999999988877322
Q ss_pred eccCCcchhhhhhccCCCCCCCCCCCCccccCCCccccccCCccCCceeEEEEEecCCCeEEEEc-CCeEEEEeCCCCCC
Q psy4876 223 KIKPLPHLMAIKILSNTSKTPMGSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVAL-GGSIYLWNGESDSN 301 (609)
Q Consensus 223 ~~~p~p~~~~~~~~~~~~~~~~~~~~~~r~i~~~p~~il~ap~~~~~~~v~~l~wsp~~lla~s~-dg~I~iWd~~~~~~ 301 (609)
.+ -..+.... .......+|...+..-..+...+ +|++++.. +..++.|+......
T Consensus 379 --------------~~-~~kk~~~~-~~~~~k~p~i~~fa~~~~RE~~W--------~Nv~~~h~~~~~~~tW~~~n~~~ 434 (910)
T KOG1539|consen 379 --------------KK-RAKKVNVF-STEKLKLPPIVEFAFENAREKEW--------DNVITAHKGKRSAYTWNFRNKTS 434 (910)
T ss_pred --------------cc-cccccccc-chhhhcCCcceeeecccchhhhh--------cceeEEecCcceEEEEeccCccc
Confidence 00 00000000 00011112222222222222222 35666554 46889999987211
Q ss_pred CceEEecCCccccccccccccccceeeeee---ec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEe---c
Q psy4876 302 SKYIICQSPLVQELTSKCIQDNRAIDHLMD---LE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTM---D 374 (609)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l---~ 374 (609)
| +.... +. ....+++|+.++.|++.+.|+..|.|.+|++++|-....+ .
T Consensus 435 ----------------------G--~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ 490 (910)
T KOG1539|consen 435 ----------------------G--RHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP 490 (910)
T ss_pred ----------------------c--cEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCc
Confidence 1 11111 11 4578999999999999999999999999999999888888 4
Q ss_pred CCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q psy4876 375 GHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQH 452 (609)
Q Consensus 375 ~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~ 452 (609)
.|...|+.++.| +..+++++.+|.+.+||+.... .+..+. -...+.++..+.....+|.+..|-.|+++|..+.
T Consensus 491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-- 566 (910)
T KOG1539|consen 491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-LKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR-- 566 (910)
T ss_pred cccCceeEEEecCCCceEEEccCcceEEEEecCCcc-eeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhh--
Confidence 899999999997 4789999999999999999863 444444 4567888999998889999999999999999987
Q ss_pred CCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecC
Q psy4876 453 TFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFA 532 (609)
Q Consensus 453 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~ 532 (609)
+.++.+.+|.+.|++++|+|||++++.++ .|++|++||+.++.++..+....++.++.|+|+|.+|++++. +
T Consensus 567 ----kvvR~f~gh~nritd~~FS~DgrWlisas---mD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hv-d 638 (910)
T KOG1539|consen 567 ----KVVREFWGHGNRITDMTFSPDGRWLISAS---MDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHV-D 638 (910)
T ss_pred ----hhhHHhhccccceeeeEeCCCCcEEEEee---cCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEe-c
Confidence 78899999999999999999998777764 899999999999999999999999999999999999999984 4
Q ss_pred CCeEEEEECCCC
Q psy4876 533 QNQLIIWKYPSL 544 (609)
Q Consensus 533 dg~I~Iwd~~~~ 544 (609)
.+-|++|--.+.
T Consensus 639 ~~gIylWsNksl 650 (910)
T KOG1539|consen 639 QNGIYLWSNKSL 650 (910)
T ss_pred CceEEEEEchhH
Confidence 588999976543
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=210.91 Aligned_cols=243 Identities=16% Similarity=0.325 Sum_probs=214.2
Q ss_pred eec-CCCCeEEEEEccCC-CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCC
Q psy4876 331 DLE-GNENVCSVAWIQEG-YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRD 408 (609)
Q Consensus 331 ~~~-h~~~V~~v~~spdg-~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~ 408 (609)
.+. |.+.|.|++=+|.. ..+|+|+.||.|+|||+....+..++..|.+.|..|+++...+++++.|.+|+.|-+...
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~- 139 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGP- 139 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCC-
Confidence 344 89999999999987 889999999999999999999999999999999999998888999999999999998863
Q ss_pred eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEecc
Q psy4876 409 HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGT 488 (609)
Q Consensus 409 ~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs 488 (609)
...++. ....+.+|.-+..+..+|+||. .|.|||.... .|+..+.-....|.++.|+|-...+|++++
T Consensus 140 -p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~------~Pv~smswG~Dti~svkfNpvETsILas~~-- 207 (433)
T KOG0268|consen 140 -PLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD------NPVSSMSWGADSISSVKFNPVETSILASCA-- 207 (433)
T ss_pred -cceeee-ccccccccccccccccccccCc--eeeecccccC------CccceeecCCCceeEEecCCCcchheeeec--
Confidence 555554 3456788888888889999986 5999999876 788889888889999999999989999885
Q ss_pred CCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC-ceEEEEeCCCCCEEEEEEeCCCC
Q psy4876 489 ADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL-VKVAELHGHSARVLNLAMSPDET 567 (609)
Q Consensus 489 ~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~ 567 (609)
.|+.|.+||++++.+++.+.....-..|+|+|.+-.+++ +.+|..++.||++.. .++....+|.+.|.++.|||.|+
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~--a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVA--ANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQ 285 (433)
T ss_pred cCCceEEEecccCCccceeeeeccccceecCccccceee--ccccccceehhhhhhcccchhhcccceeEEEeccCCCcc
Confidence 899999999999999999988888899999995555555 669999999999865 45667789999999999999999
Q ss_pred EEEEEECCCCEEEEEcCCCcc
Q psy4876 568 TVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 568 ~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
-+++||.|.+||||.+..+..
T Consensus 286 EfvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred hhccccccceEEEeecCCCcc
Confidence 999999999999999987653
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-23 Score=217.21 Aligned_cols=238 Identities=22% Similarity=0.392 Sum_probs=201.1
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccC
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQE 346 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spd 346 (609)
..+|.++.|+++| ++++..+|.|.|||... ..........|...|-+++|.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~-------------------------~k~~~~~~~~h~~rvg~laW~-- 269 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE-------------------------QKKTRTLRGSHASRVGSLAWN-- 269 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhh-------------------------ccccccccCCcCceeEEEecc--
Confidence 5679999999986 55577799999999977 222222222278999999998
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEE-ecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRT-MDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
+..+.+|+.+|.|..+|+...+.... +.+|...|..+.| ++.+|++|+.|+.+.|||.... .+...+..|...|..
T Consensus 270 ~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-~p~~~~~~H~aAVKA 348 (484)
T KOG0305|consen 270 SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-EPKFTFTEHTAAVKA 348 (484)
T ss_pred CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc-cccEEEeccceeeeE
Confidence 67899999999999999988765554 8899999999999 6899999999999999999665 577888899999999
Q ss_pred EEEcc-CCCEEEEEe--CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 424 LKWSP-DGRYLASGG--NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 424 l~~sp-dg~~lasgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
++|+| ...+||+|+ .|++|++||..++ ..+..+. -...|..|.|++..+.++++- |..+..|.||+..+
T Consensus 349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g------~~i~~vd-tgsQVcsL~Wsk~~kEi~sth-G~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 349 LAWCPWQSGLLATGGGSADRCIKFWNTNTG------ARIDSVD-TGSQVCSLIWSKKYKELLSTH-GYSENQITLWKYPS 420 (484)
T ss_pred eeeCCCccCceEEcCCCcccEEEEEEcCCC------cEecccc-cCCceeeEEEcCCCCEEEEec-CCCCCcEEEEeccc
Confidence 99999 667899875 5999999999988 5665554 457899999999887777766 47888999999999
Q ss_pred CceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q psy4876 501 GACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL 544 (609)
Q Consensus 501 ~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~ 544 (609)
.+.+..+..| ..|..++++|||..+++++ .|.++++|++-..
T Consensus 421 ~~~~~~l~gH~~RVl~la~SPdg~~i~t~a--~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 421 MKLVAELLGHTSRVLYLALSPDGETIVTGA--ADETLRFWNLFDE 463 (484)
T ss_pred cceeeeecCCcceeEEEEECCCCCEEEEec--ccCcEEeccccCC
Confidence 8888888776 4899999999999999954 7999999998654
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-23 Score=223.02 Aligned_cols=258 Identities=17% Similarity=0.285 Sum_probs=194.4
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCC------C---ceE----------EecCC---ccccc------ccc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSN------S---KYI----------ICQSP---LVQEL------TSK 318 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~------~---~~~----------~~~~~---~~~~~------~~~ 318 (609)
+-.|.++.||+|| ++++|.|+.|+||.+...+- . .+. ..... .+... ...
T Consensus 267 ~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 267 KGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred CCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 3358999999998 55689999999999876100 0 000 00000 00000 000
Q ss_pred ccc-----cccceeeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe---cCCE
Q psy4876 319 CIQ-----DNRAIDHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW---NTYI 389 (609)
Q Consensus 319 ~~~-----~~~~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~---~~~~ 389 (609)
+.. -.-...+++.+. |.+.|.+++|+.++ +|++++.|.+|+||++...++++.|. |..-|+|++| |.++
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDry 424 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRY 424 (712)
T ss_pred cccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCc
Confidence 000 001123555666 99999999999765 88899999999999999999999998 9999999999 4689
Q ss_pred EEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee--c----
Q psy4876 390 LSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL--S---- 463 (609)
Q Consensus 390 L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~--~---- 463 (609)
|++|+-||.|+||++... .+.....-..-|++++|.|||++.++|+.+|.+++|+....+ ....+ .
T Consensus 425 FiSGSLD~KvRiWsI~d~--~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk------~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 425 FISGSLDGKVRLWSISDK--KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK------LVSDFHIRLHNK 496 (712)
T ss_pred EeecccccceEEeecCcC--eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCe------EEEeeeEeeccC
Confidence 999999999999999875 455555566899999999999999999999999999998763 22211 1
Q ss_pred ---CCcccEEEEEEcCCCCc-EEEEEeccCCCeEEEEECCCCceeEEEcCCC---CeEEEEEcCCCCeEEEEEecCCCeE
Q psy4876 464 ---RHQAAVKAIAWCPWSPN-VLASGGGTADRHIYFWNVSSGACLDSIDTKS---QVCALLWNSDYKELVSAHGFAQNQL 536 (609)
Q Consensus 464 ---~h~~~V~~l~~sp~~~~-llasggGs~Dg~I~iwd~~t~~~~~~~~~~~---~v~sl~~s~~g~~l~~~sG~~dg~I 536 (609)
.|. .|+.+.|.|.... +|++ +.|..|+|||.++..++..+.+.. .-....|+.||++|++++ +|..|
T Consensus 497 Kk~~~~-rITG~Q~~p~~~~~vLVT---SnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s--eDs~V 570 (712)
T KOG0283|consen 497 KKKQGK-RITGLQFFPGDPDEVLVT---SNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS--EDSWV 570 (712)
T ss_pred ccccCc-eeeeeEecCCCCCeEEEe---cCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee--cCceE
Confidence 123 7999999987665 6666 489999999999888888887532 345678888999999954 99999
Q ss_pred EEEECC
Q psy4876 537 IIWKYP 542 (609)
Q Consensus 537 ~Iwd~~ 542 (609)
+||++.
T Consensus 571 YiW~~~ 576 (712)
T KOG0283|consen 571 YIWKND 576 (712)
T ss_pred EEEeCC
Confidence 999974
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-24 Score=220.62 Aligned_cols=274 Identities=21% Similarity=0.332 Sum_probs=230.2
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQ 360 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~ 360 (609)
++++|.||.|++|++...... .....+..++ |.+.|.+++...+|+.|++++.|-+|+
T Consensus 40 LfTgGRDg~i~~W~~~~d~~~---------------------~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSNE---------------------PSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred EEecCCCceEEEeccccccCC---------------------cccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 889999999999999763211 1112355667 999999999999999999999999999
Q ss_pred EEeCCCC--eeEEEecCCCCceEEEEe---cCCEEEEEecCCeEEEEEcCCCCe---------eEEEEc-cCCCCeEEEE
Q psy4876 361 LWDVSAK--KKCRTMDGHDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRDH---------KVALLQ-NHTQEVCGLK 425 (609)
Q Consensus 361 iwd~~~~--~~~~~l~~h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~~~~---------~~~~~~-~h~~~V~~l~ 425 (609)
+|+...+ -+..++..|...|.|++. +..++++|+-|+.|.+||+.++.. ....+. ++...|.+++
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 9999887 577889999999999999 678999999999999999997621 122233 7889999999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeE
Q psy4876 426 WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLD 505 (609)
Q Consensus 426 ~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~ 505 (609)
.++.|..|++|+..+.|++||.++. +.+..+.+|...|.++..++||..++.+ +.||+|++||+....|+.
T Consensus 179 ~N~t~t~ivsGgtek~lr~wDprt~------~kimkLrGHTdNVr~ll~~dDGt~~ls~---sSDgtIrlWdLgqQrCl~ 249 (735)
T KOG0308|consen 179 MNQTGTIIVSGGTEKDLRLWDPRTC------KKIMKLRGHTDNVRVLLVNDDGTRLLSA---SSDGTIRLWDLGQQRCLA 249 (735)
T ss_pred cCCcceEEEecCcccceEEeccccc------cceeeeeccccceEEEEEcCCCCeEeec---CCCceEEeeeccccceee
Confidence 9999999999999999999999998 7788899999999999999999766654 479999999999999999
Q ss_pred EEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 506 SIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 506 ~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
++..| ..|+++..+++-..+++ |+.|+.|..=|+.+......+.....+|..+..+.+.+-+-+++.|+.|+-|...
T Consensus 250 T~~vH~e~VWaL~~~~sf~~vYs--G~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 250 TYIVHKEGVWALQSSPSFTHVYS--GGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred eEEeccCceEEEeeCCCcceEEe--cCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 98765 47999999999999998 7799999999998865444444566778888887666666778889999999876
Q ss_pred CCc
Q psy4876 585 EKV 587 (609)
Q Consensus 585 ~~~ 587 (609)
...
T Consensus 328 ~~~ 330 (735)
T KOG0308|consen 328 PDI 330 (735)
T ss_pred ccc
Confidence 543
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-22 Score=191.17 Aligned_cols=276 Identities=15% Similarity=0.196 Sum_probs=214.9
Q ss_pred eeEEEEEecCC--CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 270 YYLNLIDWSHF--NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 270 ~~v~~l~wsp~--~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
.+|..|.|+|. .+|+++.||++++|++.. . .....+.|..++.+++|.+ .
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~-------------------------~--~l~~~~~~~~plL~c~F~d-~ 65 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPA-------------------------N--SLKLKFKHGAPLLDCAFAD-E 65 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccc-------------------------h--hhhhheecCCceeeeeccC-C
Confidence 46888999975 389999999999999987 3 3444556899999999987 4
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
..+++|+.||.|+++|+.++... .+..|...|.||.+. ...+++|+.|++|++||.+.. .....+.. ...|.++.
T Consensus 66 ~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-~~~~~~d~-~kkVy~~~ 142 (323)
T KOG1036|consen 66 STIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-VVVGTFDQ-GKKVYCMD 142 (323)
T ss_pred ceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc-cccccccc-CceEEEEe
Confidence 67889999999999999987654 455699999999996 688999999999999999974 34444433 34788777
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc---
Q psy4876 426 WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA--- 502 (609)
Q Consensus 426 ~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~--- 502 (609)
.+ |+.|++|+.|..|.+||+++..... ...-..-.-.+.|+++.|.+.-++++ +.||.|.+=.++...
T Consensus 143 v~--g~~LvVg~~~r~v~iyDLRn~~~~~----q~reS~lkyqtR~v~~~pn~eGy~~s---SieGRVavE~~d~s~~~~ 213 (323)
T KOG1036|consen 143 VS--GNRLVVGTSDRKVLIYDLRNLDEPF----QRRESSLKYQTRCVALVPNGEGYVVS---SIEGRVAVEYFDDSEEAQ 213 (323)
T ss_pred cc--CCEEEEeecCceEEEEEcccccchh----hhccccceeEEEEEEEecCCCceEEE---eecceEEEEccCCchHHh
Confidence 65 7789999999999999999874321 11112234568999999976655554 489999987776552
Q ss_pred -eeEEEcCC----------CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEE
Q psy4876 503 -CLDSIDTK----------SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571 (609)
Q Consensus 503 -~~~~~~~~----------~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s 571 (609)
....|..| .+|.+|+|+|-...+++ |+.||.|.+||..+.+.+..+......|..++|+.||..||.
T Consensus 214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaT--gGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAi 291 (323)
T KOG1036|consen 214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFAT--GGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAI 291 (323)
T ss_pred hhceeEEeeecccCCceEEEEeceeEeccccceEEe--cCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEE
Confidence 22233322 26899999999999999 668999999999999999999888888999999999999999
Q ss_pred EEC-----CCC-------EEEEEcCCCc
Q psy4876 572 AGA-----DET-------LRLWKIFEKV 587 (609)
Q Consensus 572 ~s~-----Dg~-------I~iWdl~~~~ 587 (609)
|+. ... |.|.++...+
T Consensus 292 a~sy~ye~~~~~~~~~~~i~I~~l~d~e 319 (323)
T KOG1036|consen 292 ASSYQYERADTPTHERNAIFIRDLTDYE 319 (323)
T ss_pred EechhhhcCCCCCCCCCceEEEeccccc
Confidence 874 223 6676666544
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.7e-23 Score=204.90 Aligned_cols=293 Identities=19% Similarity=0.263 Sum_probs=231.3
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccC
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQE 346 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spd 346 (609)
...|.+|+.++++ ++.++.+++|.=|++.++....+++--. .+... .+.......-.|...|.+++.++|
T Consensus 142 ~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~----ev~k~----~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 142 QLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD----EVLKS----HGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred cCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc----hhhhh----ccCCCCcccccccceeEEEEEcCC
Confidence 3457889999985 8889999999999999865443332110 00000 011111111138889999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGL 424 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 424 (609)
|+|||+|+.|..|.||+.++.+.+..+.+|.+.|.+++| ..+.|++++.|..|++|++... ..+.++.+|.+.|.+|
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~-s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL-SYVETLYGHQDGVLGI 292 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh-HHHHHHhCCccceeee
Confidence 999999999999999999999999999999999999999 4688999999999999999986 4788899999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee
Q psy4876 425 KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504 (609)
Q Consensus 425 ~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~ 504 (609)
....-++.+.+|+.|+++++|++.. .....+.+|.+.+.|++|-.+. -+++| +.+|.|.+|++.+.+++
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~e-------esqlifrg~~~sidcv~~In~~--HfvsG--SdnG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPE-------ESQLIFRGGEGSIDCVAFINDE--HFVSG--SDNGSIALWSLLKKKPL 361 (479)
T ss_pred chhcccceEEeccccceeEEEeccc-------cceeeeeCCCCCeeeEEEeccc--ceeec--cCCceEEEeeecccCce
Confidence 9988888888888999999999954 3445677889999999998764 45665 59999999999998887
Q ss_pred EEEcC-------------CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC----ceEEEEeCCCCCEEEEEEeCCCC
Q psy4876 505 DSIDT-------------KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL----VKVAELHGHSARVLNLAMSPDET 567 (609)
Q Consensus 505 ~~~~~-------------~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~----~~~~~l~~h~~~V~~l~~spdg~ 567 (609)
.+... ...|++++..+....+++ |+.+|.|++|.+..+ ..+..+. -.+.|+.++|+++|+
T Consensus 362 f~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~as--GS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 362 FTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLAS--GSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGK 438 (479)
T ss_pred eEeeccccccCCccccccccceeeeEecccCceEEe--cCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCC
Confidence 66531 126889999999999988 668999999999776 4455554 568899999999999
Q ss_pred EEEEE-ECCCCEEEEEcC
Q psy4876 568 TVLSA-GADETLRLWKIF 584 (609)
Q Consensus 568 ~L~s~-s~Dg~I~iWdl~ 584 (609)
.|++| +....+-=|-+.
T Consensus 439 ~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 439 RIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred EEEEecccccccceeeEe
Confidence 66655 445555455443
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=9e-23 Score=219.93 Aligned_cols=243 Identities=16% Similarity=0.289 Sum_probs=208.8
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC-eeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAK-KKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
|....+.|+|.|+|.+|++++.||.|++|+.... +.-.++..+...|.+++-....|++|+.+++|.+|.+..++ .-.
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~-~~~ 90 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE-EDT 90 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCC-ccc
Confidence 7788999999999999999999999999998766 44455555888999999998999999999999999998874 333
Q ss_pred EEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCe
Q psy4876 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH 492 (609)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~ 492 (609)
.+...+-++.+++|+.+|+++|.|+.|-.|++.++... .....+.+|.++|.+|.|+|.+. +||+. +.||.
T Consensus 91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~------s~~~~lrgh~apVl~l~~~p~~~-fLAvs--s~dG~ 161 (933)
T KOG1274|consen 91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS------SQEKVLRGHDAPVLQLSYDPKGN-FLAVS--SCDGK 161 (933)
T ss_pred eeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc------chheeecccCCceeeeeEcCCCC-EEEEE--ecCce
Confidence 45556778999999999999999999999999999887 67788999999999999999885 55554 36999
Q ss_pred EEEEECCCCceeEEEcC---------CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC--CCCCEEEEE
Q psy4876 493 IYFWNVSSGACLDSIDT---------KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG--HSARVLNLA 561 (609)
Q Consensus 493 I~iwd~~t~~~~~~~~~---------~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~--h~~~V~~l~ 561 (609)
|++||+.++.+..++.. ...++.++|+|++..+++.. .|+.|.+|+...++....+.. |...+.+++
T Consensus 162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~--~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ 239 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP--VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ 239 (933)
T ss_pred EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec--cCCeEEEEccCCceeheeecccccccceEEEE
Confidence 99999999988776642 23577899999987777754 799999999999999988864 445599999
Q ss_pred EeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 562 MSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 562 ~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
|+|+|+|||+++.||.|.|||+.+.+.
T Consensus 240 wsPnG~YiAAs~~~g~I~vWnv~t~~~ 266 (933)
T KOG1274|consen 240 WSPNGKYIAASTLDGQILVWNVDTHER 266 (933)
T ss_pred EcCCCcEEeeeccCCcEEEEecccchh
Confidence 999999999999999999999997443
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=194.49 Aligned_cols=242 Identities=17% Similarity=0.247 Sum_probs=196.5
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
..+.|++|.|+|.+..|++++.||.+++||+........+. |..++.+++| +...+++|+.||.|+.+|+.++. ..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~--~~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGN--ED 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCceEEEeccCceEEEEEecCCc--ce
Confidence 57889999999999999999999999999999876655555 9999999999 67899999999999999999874 55
Q ss_pred EEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCe
Q psy4876 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH 492 (609)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~ 492 (609)
.+..|...|.||..++....+++|+.|++|++||.+.. ..+..+.. ...|.++.... +.|++| +.|..
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~------~~~~~~d~-~kkVy~~~v~g---~~LvVg--~~~r~ 156 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK------VVVGTFDQ-GKKVYCMDVSG---NRLVVG--TSDRK 156 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc------cccccccc-CceEEEEeccC---CEEEEe--ecCce
Confidence 66779999999999998888999999999999999964 34444433 34788887753 345554 37999
Q ss_pred EEEEECCCCceeEEEc---CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC----ceEEEEeCCC---------CC
Q psy4876 493 IYFWNVSSGACLDSID---TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL----VKVAELHGHS---------AR 556 (609)
Q Consensus 493 I~iwd~~t~~~~~~~~---~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~----~~~~~l~~h~---------~~ 556 (609)
+.+||+++........ ..-++.++++.|++.-.++ ++-||.|.+=.+... .+-..|+.|. -+
T Consensus 157 v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~--sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP 234 (323)
T KOG1036|consen 157 VLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVV--SSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP 234 (323)
T ss_pred EEEEEcccccchhhhccccceeEEEEEEEecCCCceEE--EeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence 9999999876554333 3458999999998777777 447999988766554 4455667774 26
Q ss_pred EEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhh
Q psy4876 557 VLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKK 592 (609)
Q Consensus 557 V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~ 592 (609)
|++|+|||-..+|+|||.||.|.+||+++.+..+..
T Consensus 235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~ 270 (323)
T KOG1036|consen 235 VNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL 270 (323)
T ss_pred eceeEeccccceEEecCCCceEEEccCcchhhhhhc
Confidence 999999999999999999999999999987765544
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=194.92 Aligned_cols=242 Identities=22% Similarity=0.322 Sum_probs=193.4
Q ss_pred CCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCC-eeE-EEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCC
Q psy4876 334 GNENVCSVAWIQ-EGYMLGVGTSLGTVQLWDVSAK-KKC-RTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRD 408 (609)
Q Consensus 334 h~~~V~~v~~sp-dg~~Lasgs~dg~I~iwd~~~~-~~~-~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~ 408 (609)
.++.|.+++||| ...++++|+.||+||+|+++.. ..+ +....|.++|.+++| +|..+++|+.|+.+++||+.++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~- 104 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG- 104 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-
Confidence 678999999999 4577779999999999999873 322 445679999999999 6899999999999999999997
Q ss_pred eeEEEEccCCCCeEEEEEccCCC--EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 409 HKVALLQNHTQEVCGLKWSPDGR--YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 409 ~~~~~~~~h~~~V~~l~~spdg~--~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
.+..+..|.++|..+.|-+... .|++|+.|.+|+.||.+.. .++.++. -...+.++..-. -+++++
T Consensus 105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~------~pv~t~~-LPeRvYa~Dv~~---pm~vVa- 172 (347)
T KOG0647|consen 105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS------NPVATLQ-LPERVYAADVLY---PMAVVA- 172 (347)
T ss_pred -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC------Ceeeeee-ccceeeehhccC---ceeEEE-
Confidence 4677788999999999988655 7999999999999999987 6777665 345566665432 355554
Q ss_pred ccCCCeEEEEECCCCceeEE-E--cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC--ceEEEEeCCCC------
Q psy4876 487 GTADRHIYFWNVSSGACLDS-I--DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL--VKVAELHGHSA------ 555 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t~~~~~~-~--~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~--~~~~~l~~h~~------ 555 (609)
..++.|.+|+++++..... + ....++.+++...+....+. |+-+|.+.|..+..+ +.-..|+.|..
T Consensus 173 -ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al--GsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 173 -TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL--GSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred -ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe--eeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence 3799999999986653322 2 23458999999988887777 568999999998776 55556677752
Q ss_pred ---CEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 556 ---RVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 556 ---~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
.|++|+|+|.-..|+|+|.||++.+||-....+.+.
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred ceEEecceEeecccceEEEecCCceEEEecchhhhhhhc
Confidence 478899999999999999999999999766554443
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-23 Score=196.18 Aligned_cols=264 Identities=19% Similarity=0.310 Sum_probs=224.7
Q ss_pred EEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q psy4876 284 AVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLW 362 (609)
Q Consensus 284 a~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iw 362 (609)
+++.|.+.+||.+++ +. ++.++. |.+.|.++.|++.+.++++++.|++..||
T Consensus 165 tASADhTA~iWs~Es-------------------------g~--CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 165 TASADHTARIWSLES-------------------------GA--CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred ecccccceeEEeecc-------------------------cc--ceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 477899999999988 54 455666 99999999999999999999999999999
Q ss_pred eC------CC------------------------------C----eeEEEecCCCCceEEEEe--cCCEEEEEecCCeEE
Q psy4876 363 DV------SA------------------------------K----KKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIV 400 (609)
Q Consensus 363 d~------~~------------------------------~----~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~ 400 (609)
.. .. + ..+..+.+|.+.|.+..| .+..+++++.|.+..
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 62 11 0 123467789999999999 689999999999999
Q ss_pred EEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCc
Q psy4876 401 HHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPN 480 (609)
Q Consensus 401 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 480 (609)
+||++++ ..+..+.+|..+.+.++-+|..+++++.+.|-+.++||.+.. ...+..|++|...|+++.|.-+.
T Consensus 298 lwDVEtg-e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea-----I~sV~VFQGHtdtVTS~vF~~dd-- 369 (481)
T KOG0300|consen 298 LWDVETG-EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-----IQSVAVFQGHTDTVTSVVFNTDD-- 369 (481)
T ss_pred eeeeccC-ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh-----cceeeeecccccceeEEEEecCC--
Confidence 9999998 589999999999999999999999999999999999999854 26778899999999999999865
Q ss_pred EEEEEeccCCCeEEEEECCCC-ceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE-----EeCCC
Q psy4876 481 VLASGGGTADRHIYFWNVSSG-ACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE-----LHGHS 554 (609)
Q Consensus 481 llasggGs~Dg~I~iwd~~t~-~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~-----l~~h~ 554 (609)
-+++| +.|.+|++||+++. ..+.++...+.+..++.+..++.++.-+ ++.+|++||+... .+.. -++|.
T Consensus 370 ~vVSg--SDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPh--DNRqvRlfDlnG~-RlaRlPrtsRqgHr 444 (481)
T KOG0300|consen 370 RVVSG--SDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPH--DNRQVRLFDLNGN-RLARLPRTSRQGHR 444 (481)
T ss_pred ceeec--CCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEecc--CCceEEEEecCCC-ccccCCcccccccc
Confidence 45554 69999999999864 5788999999999999999999999966 7889999998643 3332 35899
Q ss_pred CCEEEEEEeCCCC--EEEEEECCCCEEEEEcCCCc
Q psy4876 555 ARVLNLAMSPDET--TVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 555 ~~V~~l~~spdg~--~L~s~s~Dg~I~iWdl~~~~ 587 (609)
.-|.|++|..+.. -|+++|-|..+.=|++....
T Consensus 445 RMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 445 RMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 9999999986543 58899999999999987653
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-24 Score=198.08 Aligned_cols=245 Identities=20% Similarity=0.307 Sum_probs=219.6
Q ss_pred cCCCCeEEEEEcc---CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCC
Q psy4876 333 EGNENVCSVAWIQ---EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSR 407 (609)
Q Consensus 333 ~h~~~V~~v~~sp---dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~ 407 (609)
.|..+|..++|+| +|-+|++++.||.-.+-+-++|.-+.++.+|.+.|+....| ....++++.|-+-++||.-++
T Consensus 12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tg 91 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG 91 (334)
T ss_pred CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhh
Confidence 3899999999986 78999999999999998999999999999999999999985 456778888999999999988
Q ss_pred CeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEec
Q psy4876 408 DHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 408 ~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggG 487 (609)
. .+..+. |..-|..++|+.|.++|++|+.+..++|||++..+ .+...+.+|.+.|..+.|+.....+|.+
T Consensus 92 d-elhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~-----App~E~~ghtg~Ir~v~wc~eD~~iLSS--- 161 (334)
T KOG0278|consen 92 D-ELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK-----APPKEISGHTGGIRTVLWCHEDKCILSS--- 161 (334)
T ss_pred h-hhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCC-----CCchhhcCCCCcceeEEEeccCceEEee---
Confidence 5 555554 88899999999999999999999999999999774 6778899999999999999987777765
Q ss_pred cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCC
Q psy4876 488 TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET 567 (609)
Q Consensus 488 s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 567 (609)
+.|++|++||.+++..++++...+.|.++.++++|.+|.++. .+.|.+||..+...++.+.. ...|.+.+++|+..
T Consensus 162 add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~---gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~ 237 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY---GSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKE 237 (334)
T ss_pred ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec---CceeEEeccccccceeeccC-ccccccccccCCCc
Confidence 389999999999999999999999999999999999998875 57899999999999988753 35689999999999
Q ss_pred EEEEEECCCCEEEEEcCCCccchh
Q psy4876 568 TVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 568 ~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
.+++|+.|..++.||..+++....
T Consensus 238 ~fVaGged~~~~kfDy~TgeEi~~ 261 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGEEIGS 261 (334)
T ss_pred eEEecCcceEEEEEeccCCceeee
Confidence 999999999999999999887654
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=203.37 Aligned_cols=241 Identities=23% Similarity=0.320 Sum_probs=202.2
Q ss_pred CEEEEEeC-CCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEE
Q psy4876 348 YMLGVGTS-LGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGL 424 (609)
Q Consensus 348 ~~Lasgs~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 424 (609)
.+++++.. -..|.+|.+...........-.+.|.+++- +|.+|+.|+..|.|++|.+.++ ..+..+.+|-+.|+|+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG-~LL~v~~aHYQ~ITcL 129 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSG-ILLNVLSAHYQSITCL 129 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccc-cHHHHHHhhccceeEE
Confidence 56665544 347999998766555544446678999887 4788888889999999999998 4777889999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCC---CCCCCccceEeecCCcccEEEEEEcCCCC-cEEEEEeccCCCeEEEEECCC
Q psy4876 425 KWSPDGRYLASGGNDNLLNIWSGVPG---QHTFSTQPIHSLSRHQAAVKAIAWCPWSP-NVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 425 ~~spdg~~lasgs~Dg~I~iwd~~~~---~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~llasggGs~Dg~I~iwd~~t 500 (609)
.|+-||.+|++|+.||.|.+|++... .......+++.+..|.-+|+++...+.|. ..+++. +.|.++++||+..
T Consensus 130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta--S~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA--SEDRTIKLWDLSL 207 (476)
T ss_pred EEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe--cCCceEEEEEecc
Confidence 99999999999999999999986532 22224588999999999999999887532 345555 4899999999999
Q ss_pred CceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC----------------CceEEEEeCCCC--CEEEEEE
Q psy4876 501 GACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS----------------LVKVAELHGHSA--RVLNLAM 562 (609)
Q Consensus 501 ~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~----------------~~~~~~l~~h~~--~V~~l~~ 562 (609)
|..+.++.....+.+++.+|.+..+++ |..+|.|.+.++.. +..+..+.||.+ .|+|+++
T Consensus 208 g~LLlti~fp~si~av~lDpae~~~yi--Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai 285 (476)
T KOG0646|consen 208 GVLLLTITFPSSIKAVALDPAERVVYI--GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI 285 (476)
T ss_pred ceeeEEEecCCcceeEEEcccccEEEe--cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE
Confidence 999999999999999999999999999 77999999988642 245566788988 9999999
Q ss_pred eCCCCEEEEEECCCCEEEEEcCCCccchhhh
Q psy4876 563 SPDETTVLSAGADETLRLWKIFEKVKSKKKE 593 (609)
Q Consensus 563 spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~ 593 (609)
+-||.+|++|+.||.|+|||+...+..+...
T Consensus 286 s~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 286 STDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred ecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 9999999999999999999999988877766
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-23 Score=196.10 Aligned_cols=254 Identities=19% Similarity=0.312 Sum_probs=204.5
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC------------C------eeEEEecCCCCceEEEEecC--CEEEEE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSA------------K------KKCRTMDGHDVRVGALAWNT--YILSSG 393 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~------------~------~~~~~l~~h~~~V~~l~~~~--~~L~sg 393 (609)
|...+.+.+|++||.++|+|+.|..|+|+|++. + -.++++-.|...|.++.|++ .+|++|
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~ 190 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG 190 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence 999999999999999999999999999999861 1 24778888999999999974 799999
Q ss_pred ecCCeEEEEEcCCCCee-EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEE
Q psy4876 394 SRCGNIVHHDVRSRDHK-VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI 472 (609)
Q Consensus 394 s~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l 472 (609)
++|++|+++|+...... ..........|.+|.|+|.|.+|++|....++++||+.+-+... ....-..|.+.|+++
T Consensus 191 srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfv---sanPd~qht~ai~~V 267 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFV---SANPDDQHTGAITQV 267 (430)
T ss_pred cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEee---ecCcccccccceeEE
Confidence 99999999999864311 11112345689999999999999999999999999999873221 111234689999999
Q ss_pred EEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc---CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE
Q psy4876 473 AWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID---TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE 549 (609)
Q Consensus 473 ~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~---~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~ 549 (609)
.+++.+ .+.++| +.||.|++||--+++|+.++. .++.|++..|..+++++++. +.|..+++|.+.++..+.+
T Consensus 268 ~Ys~t~-~lYvTa--SkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS--G~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 268 RYSSTG-SLYVTA--SKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS--GKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred EecCCc-cEEEEe--ccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec--CCcceeeeeeecCCceEEE
Confidence 999988 578887 599999999999999999885 34589999999999999984 4899999999999999998
Q ss_pred EeCC--CC---CEEEEEEeCCCCEEEEEEC-CCCEEEEEcCCCccchhhhhh
Q psy4876 550 LHGH--SA---RVLNLAMSPDETTVLSAGA-DETLRLWKIFEKVKSKKKEIK 595 (609)
Q Consensus 550 l~~h--~~---~V~~l~~spdg~~L~s~s~-Dg~I~iWdl~~~~~~~k~~~~ 595 (609)
+.|- ++ --+...|+....+++.-.+ .+.+.-||-.+.+........
T Consensus 343 YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slg 394 (430)
T KOG0640|consen 343 YTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLG 394 (430)
T ss_pred EecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccC
Confidence 8753 12 2245567777777765543 477889999888766554443
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-22 Score=190.26 Aligned_cols=294 Identities=18% Similarity=0.224 Sum_probs=213.3
Q ss_pred eeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 270 YYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
-.|++|+|+.|| +++++.|+.|+||++..-.+ .....+...-.-+..+.|.|+||.
T Consensus 87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----------------------~eHr~~R~nve~dhpT~V~FapDc 144 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----------------------KEHRCIRQNVEYDHPTRVVFAPDC 144 (420)
T ss_pred CceeeeEEcCCCceeEEEeCCceEEEEecchhhh----------------------hhhhHhhccccCCCceEEEECCCc
Confidence 358999999997 78899999999999986100 111111111133467899999998
Q ss_pred CEEEEEe-CCCeEEEEeCCCC---eeEE---------EecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 348 YMLGVGT-SLGTVQLWDVSAK---KKCR---------TMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 348 ~~Lasgs-~dg~I~iwd~~~~---~~~~---------~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
+-+++.. ....+++|.+... ..-. .-+.|...|..+-. ++.+|++++.|..|.+|+++ + +.+.
T Consensus 145 ~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G-q~L~ 222 (420)
T KOG2096|consen 145 KSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G-QLLQ 222 (420)
T ss_pred ceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C-ceee
Confidence 6655544 4457999976432 1111 11235555655555 57899999999999999999 3 4677
Q ss_pred EEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC--CCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCC
Q psy4876 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQH--TFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD 490 (609)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~--~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~D 490 (609)
.+......-...+.||+|+++|+++-.-.|++|.+--++. ......+..+.+|...|..++|+++...++.+ +.|
T Consensus 223 ~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv---SkD 299 (420)
T KOG2096|consen 223 SIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV---SKD 299 (420)
T ss_pred eeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE---ecC
Confidence 7766666667789999999999999989999999643321 12234567889999999999999988665554 489
Q ss_pred CeEEEEECCC----Cc---eeEEE-----cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEE-eCCCCCE
Q psy4876 491 RHIYFWNVSS----GA---CLDSI-----DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL-HGHSARV 557 (609)
Q Consensus 491 g~I~iwd~~t----~~---~~~~~-----~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l-~~h~~~V 557 (609)
|++++||+.- ++ .+.+. ...+....+..+|.|+.|++++| ..|++|..++++...++ ..|...|
T Consensus 300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g---s~l~~~~se~g~~~~~~e~~h~~~I 376 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG---SDLKVFASEDGKDYPELEDIHSTTI 376 (420)
T ss_pred CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC---CceEEEEcccCccchhHHHhhcCce
Confidence 9999999852 22 22222 12345669999999999999764 67999999998887776 4599999
Q ss_pred EEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 558 LNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 558 ~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
.+|+|+++|++++|+| |..+++..-..+...+..+.
T Consensus 377 s~is~~~~g~~~atcG-dr~vrv~~ntpg~~~~V~~~ 412 (420)
T KOG2096|consen 377 SSISYSSDGKYIATCG-DRYVRVIRNTPGWHSRVVKL 412 (420)
T ss_pred eeEEecCCCcEEeeec-ceeeeeecCCCchhhHHHHh
Confidence 9999999999999986 67888887555544444333
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-21 Score=176.52 Aligned_cols=251 Identities=23% Similarity=0.388 Sum_probs=206.3
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCC------CCe---------eEEEecCCCCceEEEEe--c
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVS------AKK---------KCRTMDGHDVRVGALAW--N 386 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~------~~~---------~~~~l~~h~~~V~~l~~--~ 386 (609)
...+.+..++....|.+|+|+|.|.+.|+|+...+++|.... .+. ..+.-+.|.+.|.|.+| .
T Consensus 21 ~~f~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 21 KHFEAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred cceEEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 344556666677899999999999999999999999886432 111 12233468999999999 5
Q ss_pred CCEEEEEecCCeEEEEEcCCCC----eeEEEEccCCCCeEEEEEccC----CCEEEEEeC-CCcEEEEeCCCCCCCCCcc
Q psy4876 387 TYILSSGSRCGNIVHHDVRSRD----HKVALLQNHTQEVCGLKWSPD----GRYLASGGN-DNLLNIWSGVPGQHTFSTQ 457 (609)
Q Consensus 387 ~~~L~sgs~dg~I~iwd~~~~~----~~~~~~~~h~~~V~~l~~spd----g~~lasgs~-Dg~I~iwd~~~~~~~~~~~ 457 (609)
|.+|++|+.|.+|++.-+.... ..-..+.-|.+.|..++|..+ |.+|++++. |..|++-|...+ +
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g------~ 174 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG------Q 174 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC------C
Confidence 8999999999999998765431 123456779999999999653 567777664 667888888877 8
Q ss_pred ceEeecCCcccEEEE-EEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC--------CCeEEEEEcCCCCeEEEE
Q psy4876 458 PIHSLSRHQAAVKAI-AWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK--------SQVCALLWNSDYKELVSA 528 (609)
Q Consensus 458 ~~~~~~~h~~~V~~l-~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~--------~~v~sl~~s~~g~~l~~~ 528 (609)
..+.+.+|.+.|.++ .| ...++++| +.|.+|++||++-..++.++... +.|.+++..|.|++|++
T Consensus 175 ~~~a~sghtghilalysw---n~~m~~sg--sqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~s- 248 (350)
T KOG0641|consen 175 GFHALSGHTGHILALYSW---NGAMFASG--SQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLAS- 248 (350)
T ss_pred cceeecCCcccEEEEEEe---cCcEEEcc--CCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeee-
Confidence 899999999998776 45 34688886 69999999999999999888531 47999999999999999
Q ss_pred EecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 529 HGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 529 sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
|-.|....+||++.+..+..+..|...|.++.|+|.-.++.+++.|..|++-|+....
T Consensus 249 -g~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 249 -GHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred -ccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccch
Confidence 5589999999999999999999999999999999999999999999999999998754
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-23 Score=214.71 Aligned_cols=242 Identities=21% Similarity=0.328 Sum_probs=207.1
Q ss_pred EEEEc-cCCCEEEEEeCCCeEEEEeCCCCe------eEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCC-e
Q psy4876 340 SVAWI-QEGYMLGVGTSLGTVQLWDVSAKK------KCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRD-H 409 (609)
Q Consensus 340 ~v~~s-pdg~~Lasgs~dg~I~iwd~~~~~------~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~-~ 409 (609)
.+..+ |.+++|++|+.||.|++|++.... .+..++.|...|..+.. +++.|++++.|-+|++|+..... .
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 34443 356889999999999999986432 46788899999999887 67899999999999999998764 4
Q ss_pred eEEEEccCCCCeEEEEE-ccCCCEEEEEeCCCcEEEEeCCCCCC----CCCccceEeec-CCcccEEEEEEcCCCCcEEE
Q psy4876 410 KVALLQNHTQEVCGLKW-SPDGRYLASGGNDNLLNIWSGVPGQH----TFSTQPIHSLS-RHQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~-spdg~~lasgs~Dg~I~iwd~~~~~~----~~~~~~~~~~~-~h~~~V~~l~~sp~~~~lla 483 (609)
+..++..|.+.|.|++. -++..++|+||-|+.|.+||+.++.. .........+. ++...|.+++.++.| .+++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~iv 187 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIV 187 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEE
Confidence 67788899999999999 77888999999999999999997722 01112233333 788899999999987 6777
Q ss_pred EEeccCCCeEEEEECCCCceeEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEE
Q psy4876 484 SGGGTADRHIYFWNVSSGACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAM 562 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t~~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~ 562 (609)
+|| ..+.|++||.++++.+..+.+|. .|..+..++||..++++ +.||+|++||+...+++.++..|...|+++..
T Consensus 188 sGg--tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~--sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~ 263 (735)
T KOG0308|consen 188 SGG--TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSA--SSDGTIRLWDLGQQRCLATYIVHKEGVWALQS 263 (735)
T ss_pred ecC--cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeec--CCCceEEeeeccccceeeeEEeccCceEEEee
Confidence 764 89999999999999988888774 89999999999999995 48999999999999999999999999999999
Q ss_pred eCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 563 SPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 563 spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
+|+=..+++|+.||.|..=|+.+.
T Consensus 264 ~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 264 SPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred CCCcceEEecCCCCcEEecccCCc
Confidence 999999999999999999998874
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-22 Score=211.06 Aligned_cols=284 Identities=17% Similarity=0.253 Sum_probs=232.6
Q ss_pred eeEEEEEecCCC--eEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFN--VLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spd 346 (609)
-.|..++|..|| ++| ++..|.+.+||++. .+...+..-.|.+.|....|.+.
T Consensus 245 g~VtslSFrtDG~p~las~~~~G~m~~wDLe~-------------------------kkl~~v~~nah~~sv~~~~fl~~ 299 (910)
T KOG1539|consen 245 GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK-------------------------KKLINVTRNAHYGSVTGATFLPG 299 (910)
T ss_pred cceeEEEeccCCCeeEEeccCCceEEEEEcCC-------------------------CeeeeeeeccccCCcccceecCC
Confidence 458999999887 555 55569999999998 55555444448899999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCC----eeEEEecCCCCceEEEEe---cCCEEEEEecCCeEEEEEcCC-------------
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAK----KKCRTMDGHDVRVGALAW---NTYILSSGSRCGNIVHHDVRS------------- 406 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~------------- 406 (609)
...|++++.|..+++|-.+++ +.++.-.||..+..++.| +++.+.+++.|++++.+++..
T Consensus 300 epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~ 379 (910)
T KOG1539|consen 300 EPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNK 379 (910)
T ss_pred CceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccc
Confidence 999999999999888865543 456777789999999998 578888888887766655431
Q ss_pred ----------------------------------------------------CCeeEEEEc-----cCCCCeEEEEEccC
Q psy4876 407 ----------------------------------------------------RDHKVALLQ-----NHTQEVCGLKWSPD 429 (609)
Q Consensus 407 ----------------------------------------------------~~~~~~~~~-----~h~~~V~~l~~spd 429 (609)
...-...+. .....+++++.++.
T Consensus 380 ~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C 459 (910)
T KOG1539|consen 380 KRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC 459 (910)
T ss_pred cccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEecc
Confidence 100000111 01256889999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCCccceEee---cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEE
Q psy4876 430 GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL---SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDS 506 (609)
Q Consensus 430 g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~---~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~ 506 (609)
|++.+.|...|.|-+|++.+| .....+ ..|..+|++++...-+. ++++++ .+|.+.+||......+..
T Consensus 460 GNF~~IG~S~G~Id~fNmQSG------i~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~--~~Gilkfw~f~~k~l~~~ 530 (910)
T KOG1539|consen 460 GNFVFIGYSKGTIDRFNMQSG------IHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAG--ADGILKFWDFKKKVLKKS 530 (910)
T ss_pred CceEEEeccCCeEEEEEcccC------eeecccccCccccCceeEEEecCCCc-eEEEcc--CcceEEEEecCCcceeee
Confidence 999999999999999999998 444555 47999999999987664 555553 899999999999999999
Q ss_pred EcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 507 IDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 507 ~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
+.....+..+.++.....++++. +|-.|.++|..+.+.+..+.||.++|++++|||||++|++++.|++||+||+-++
T Consensus 531 l~l~~~~~~iv~hr~s~l~a~~~--ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 531 LRLGSSITGIVYHRVSDLLAIAL--DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred eccCCCcceeeeeehhhhhhhhc--CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc
Confidence 99999999999999999998855 7999999999999999999999999999999999999999999999999999887
Q ss_pred ccc
Q psy4876 587 VKS 589 (609)
Q Consensus 587 ~~~ 589 (609)
...
T Consensus 609 ~lI 611 (910)
T KOG1539|consen 609 TLI 611 (910)
T ss_pred cee
Confidence 754
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=208.96 Aligned_cols=284 Identities=22% Similarity=0.321 Sum_probs=211.6
Q ss_pred CeEEEE-cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEEEEEeCCCe
Q psy4876 281 NVLAVA-LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGT 358 (609)
Q Consensus 281 ~lla~s-~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~ 358 (609)
.+|+++ .||.|.++|..... |. .+...+.... |...|.++.|.|....|++++.|.+
T Consensus 65 HiLavadE~G~i~l~dt~~~~-------fr--------------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT 123 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIV-------FR--------------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDST 123 (720)
T ss_pred ceEEEecCCCceeeecchhhh-------cc--------------hhhhhhcccccccceeEeeccCCCceeEEEccCCce
Confidence 367755 57999999987610 00 0111223333 9999999999997689999999999
Q ss_pred EEEEeCCCCeeEEE--ecCCCCceEEEEe---cCCEEEEEecCCeEEEEEcCCCC-------------------------
Q psy4876 359 VQLWDVSAKKKCRT--MDGHDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRD------------------------- 408 (609)
Q Consensus 359 I~iwd~~~~~~~~~--l~~h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~~~------------------------- 408 (609)
+++||+...+++.. +.+|...|.+++| +...|++|++||.|.|||++...
T Consensus 124 ~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~ 203 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL 203 (720)
T ss_pred eeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence 99999999988877 8999999999999 68999999999999999998432
Q ss_pred -eeEEEEccCCCCeEE---EEEccCCCEEEEEeC-CCcEEEEeCCCCCCCCCccceEeec--CC---cccEEEEEEcCCC
Q psy4876 409 -HKVALLQNHTQEVCG---LKWSPDGRYLASGGN-DNLLNIWSGVPGQHTFSTQPIHSLS--RH---QAAVKAIAWCPWS 478 (609)
Q Consensus 409 -~~~~~~~~h~~~V~~---l~~spdg~~lasgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~--~h---~~~V~~l~~sp~~ 478 (609)
..+.....+...|.+ +.+..|...||+++. |+.|+|||++........++..... .| ...+.++.....|
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 001111234444555 556678889999888 9999999999875544444443332 23 3357788888888
Q ss_pred CcEEEEEeccCCCeEEEEECCCCc--eeEEEcCC---CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-eEEEEeC
Q psy4876 479 PNVLASGGGTADRHIYFWNVSSGA--CLDSIDTK---SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV-KVAELHG 552 (609)
Q Consensus 479 ~~llasggGs~Dg~I~iwd~~t~~--~~~~~~~~---~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~-~~~~l~~ 552 (609)
.+|+|++ .|+.|++||+.+-. ++..+.++ ..-..-..+|++.++++ |..|...+||.+.+.+ ....+.+
T Consensus 284 t~L~AsC---tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~S--gSsd~~ayiw~vs~~e~~~~~l~G 358 (720)
T KOG0321|consen 284 TYLFASC---TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLS--GSSDEQAYIWVVSSPEAPPALLLG 358 (720)
T ss_pred CeEEEEe---cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEec--cCCCcceeeeeecCccCChhhhhC
Confidence 9999998 59999999998543 23333322 22334467899999999 6689999999998754 4556789
Q ss_pred CCCCEEEEEEeCC-CCEEEEEECCCCEEEEEcCCCccch
Q psy4876 553 HSARVLNLAMSPD-ETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 553 h~~~V~~l~~spd-g~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
|.-.|++++|.|. -.-+++++.|..++||++..+....
T Consensus 359 ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 359 HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred cceEEEEEeeccccCCCceeeccCcceEEEeccCchhhc
Confidence 9999999999883 2357777999999999997766554
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=210.32 Aligned_cols=272 Identities=18% Similarity=0.277 Sum_probs=213.5
Q ss_pred EEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~ 348 (609)
.+.|+|.|+| +++++.||.|++|+..... +.-..+. +...|.+++. .+.
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~--------------------------e~P~ti~~~g~~v~~ia~--~s~ 67 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDE--------------------------EEPETIDISGELVSSIAC--YSN 67 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcc--------------------------cCCchhhccCceeEEEee--ccc
Confidence 6779999987 7889999999999987620 1111222 5566666665 456
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEE
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKW 426 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 426 (609)
+|++|+.+++|.+|.+.+++.-..+....-++.+++++ |.+++.|+.|-.|++.+..... ....+.+|.++|.+|.|
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~~lrgh~apVl~l~~ 146 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-QEKVLRGHDAPVLQLSY 146 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc-hheeecccCCceeeeeE
Confidence 99999999999999999888777777777888999994 6799999999999999999874 77889999999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC--CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee
Q psy4876 427 SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR--HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504 (609)
Q Consensus 427 spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~ 504 (609)
+|.+++||+.+-||.|+|||+.++........+..-.. ....+..++|+|++..+++.+ .|+.|++|+..+++..
T Consensus 147 ~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~---~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 147 DPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP---VDNTVKVYSRKGWELQ 223 (933)
T ss_pred cCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec---cCCeEEEEccCCceeh
Confidence 99999999999999999999998733211111111111 134567899999988888876 6999999999999988
Q ss_pred EEEcCC---CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEE
Q psy4876 505 DSIDTK---SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581 (609)
Q Consensus 505 ~~~~~~---~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iW 581 (609)
..+... +.++.+.|+|+|+||++ ++.+|.|.|||..+.+. +.....|.+++|.|++..+-.-...|...+|
T Consensus 224 f~Lr~~~~ss~~~~~~wsPnG~YiAA--s~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWSPNGKYIAA--STLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred eeecccccccceEEEEEcCCCcEEee--eccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 887643 35999999999999999 56999999999988332 2234679999999998866555555554444
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-22 Score=186.52 Aligned_cols=247 Identities=21% Similarity=0.327 Sum_probs=197.4
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC---eeEEEecCCCCceEEEEe-c---CCEEEEEecCCeEEEEEcCC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAK---KKCRTMDGHDVRVGALAW-N---TYILSSGSRCGNIVHHDVRS 406 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~---~~~~~l~~h~~~V~~l~~-~---~~~L~sgs~dg~I~iwd~~~ 406 (609)
|.+.|.++...--|++||+++.|++|+|+.+... +++.++.+|.++|..++| + |.+|++++.||.|.||.-..
T Consensus 10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~ 89 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN 89 (299)
T ss_pred hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC
Confidence 8888888888888999999999999999999754 578899999999999999 4 78999999999999999887
Q ss_pred CC-eeEEEEccCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCC---C--
Q psy4876 407 RD-HKVALLQNHTQEVCGLKWSP--DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW---S-- 478 (609)
Q Consensus 407 ~~-~~~~~~~~h~~~V~~l~~sp--dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---~-- 478 (609)
+. ........|...|++++|-| -|-.||+++.||.|.|.+.+.... .........|.-.|++++|.|- |
T Consensus 90 g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~---w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 90 GRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG---WTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred CchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC---ccchhhhhccccccceeeecCcCCCccc
Confidence 63 23455678999999999988 466899999999999999876511 1233445679999999999996 2
Q ss_pred --------CcEEEEEeccCCCeEEEEECCCCc--eeEEEcCC-CCeEEEEEcCCC----CeEEEEEecCCCeEEEEECCC
Q psy4876 479 --------PNVLASGGGTADRHIYFWNVSSGA--CLDSIDTK-SQVCALLWNSDY----KELVSAHGFAQNQLIIWKYPS 543 (609)
Q Consensus 479 --------~~llasggGs~Dg~I~iwd~~t~~--~~~~~~~~-~~v~sl~~s~~g----~~l~~~sG~~dg~I~Iwd~~~ 543 (609)
..-|++|| .|..|+||+..++. ....+..| .-|+.++|.|.- .++++ ++.||.|.||....
T Consensus 167 ~~~~~~~~~krlvSgG--cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS--~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGG--CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS--CSQDGTVIIWTKDE 242 (299)
T ss_pred cccCcccccceeeccC--CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE--ecCCCcEEEEEecC
Confidence 13477876 89999999998764 22335555 489999999975 34455 55999999998752
Q ss_pred C-c--eEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 544 L-V--KVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 544 ~-~--~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
. + ....+......+..+.||..|..|+.++.|+.|.+|.-....
T Consensus 243 e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 243 EYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred ccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCC
Confidence 2 1 122334456789999999999999999999999999866543
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-22 Score=186.02 Aligned_cols=236 Identities=22% Similarity=0.417 Sum_probs=190.0
Q ss_pred EEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc--CCCEEE
Q psy4876 275 IDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ--EGYMLG 351 (609)
Q Consensus 275 l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp--dg~~La 351 (609)
+++....+++++.|++|+|+.+..+ +....+.++. |.++|..++|.. -|.+||
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n------------------------~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLA 74 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNN------------------------GQSKLLAELTGHSGPVWKVAWAHPKFGTILA 74 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCC------------------------CCceeeeEecCCCCCeeEEeecccccCcEee
Confidence 3444556888999999999999872 4446788888 999999999976 689999
Q ss_pred EEeCCCeEEEEeCCCCe--eEEEecCCCCceEEEEe--c--CCEEEEEecCCeEEEEEcCCCC--eeEEEEccCCCCeEE
Q psy4876 352 VGTSLGTVQLWDVSAKK--KCRTMDGHDVRVGALAW--N--TYILSSGSRCGNIVHHDVRSRD--HKVALLQNHTQEVCG 423 (609)
Q Consensus 352 sgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~--~--~~~L~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~ 423 (609)
+++.||.|.||.-+.++ .......|...|++++| + |-.|++++.||.|.|.+++... ........|.-.|++
T Consensus 75 ScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvns 154 (299)
T KOG1332|consen 75 SCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNS 154 (299)
T ss_pred EeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccce
Confidence 99999999999988774 34556789999999999 2 6789999999999999988652 234456789999999
Q ss_pred EEEccC---C-----------CEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC---CcEEEEEe
Q psy4876 424 LKWSPD---G-----------RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS---PNVLASGG 486 (609)
Q Consensus 424 l~~spd---g-----------~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---~~llasgg 486 (609)
++|.|. | +.|++|+.|+.|+||+...+. ...-..+.+|.+.|+.++|+|.- ...++++
T Consensus 155 Vswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~----w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~- 229 (299)
T KOG1332|consen 155 VSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS----WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC- 229 (299)
T ss_pred eeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc----hhhhhhhhhcchhhhhhhhccccCCCceeeEEe-
Confidence 999995 5 569999999999999998863 24445689999999999999964 3457776
Q ss_pred ccCCCeEEEEECCCC--ceeEEE--cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q psy4876 487 GTADRHIYFWNVSSG--ACLDSI--DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t~--~~~~~~--~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~ 542 (609)
+.||++.||-.+.. .-..++ +....+..+.|+..|+.|+++. .|+.|.+|.-.
T Consensus 230 -SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~--GdNkvtlwke~ 286 (299)
T KOG1332|consen 230 -SQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSG--GDNKVTLWKEN 286 (299)
T ss_pred -cCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEec--CCcEEEEEEeC
Confidence 59999999987622 111111 1345799999999999999954 69999999854
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=195.36 Aligned_cols=235 Identities=19% Similarity=0.265 Sum_probs=202.5
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~ 413 (609)
..++++...+....+++|+.|..+.++|...++.+..+.||...|..+.++ ...+++++.|..|+||...... ....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPTS 298 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Cccc
Confidence 567888888887899999999999999999999999999999999999996 4778899999999999998764 6667
Q ss_pred EccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC--CcccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR--HQAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
...|..+|+.+..+|.|.||+++++|++..+.|++++ ..+..... ..-.+++.+||||| .++.+| +.|+
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g------~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtg--t~d~ 369 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSG------SQLTVVSDETSDVEYTSAAFHPDG-LIFGTG--TPDG 369 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCC------cEEEEEeeccccceeEEeeEcCCc-eEEecc--CCCc
Confidence 7889999999999999999999999999999999998 44444332 33458999999998 566665 6999
Q ss_pred eEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC-CCCEEEEEEeCCCCEE
Q psy4876 492 HIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH-SARVLNLAMSPDETTV 569 (609)
Q Consensus 492 ~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~L 569 (609)
.|+|||+.++..+..|.+| ++|..+.|+.+|-+|++++ +|+.|++||++..+...++.-. ...|.+++|.+.|.+|
T Consensus 370 ~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a--dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L 447 (506)
T KOG0289|consen 370 VVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA--DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYL 447 (506)
T ss_pred eEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe--cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeE
Confidence 9999999999988889877 4999999999999999965 8999999999988877776533 2369999999999999
Q ss_pred EEEECCCCEEEEE
Q psy4876 570 LSAGADETLRLWK 582 (609)
Q Consensus 570 ~s~s~Dg~I~iWd 582 (609)
+.++.|=.|++++
T Consensus 448 ~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 448 GIAGSDLQVYICK 460 (506)
T ss_pred EeecceeEEEEEe
Confidence 9998775555554
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=196.28 Aligned_cols=241 Identities=23% Similarity=0.311 Sum_probs=204.2
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEE----E-------------e-cCCCCceEEEEe--cCCEEEEE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCR----T-------------M-DGHDVRVGALAW--NTYILSSG 393 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~----~-------------l-~~h~~~V~~l~~--~~~~L~sg 393 (609)
|.-.|++|+++|++.++++++.+|+|.=|++.+++..+ . - .+|...+.+++. ++.+|++|
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatg 220 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATG 220 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEec
Confidence 88999999999999999999999999999998876431 1 0 267778888888 68999999
Q ss_pred ecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEE
Q psy4876 394 SRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473 (609)
Q Consensus 394 s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~ 473 (609)
+.|..|.||+.++.+ .+..+.+|.+.|.+++|-.....+++++.|+.|++|+++.. ..+.++.+|+..|.+|.
T Consensus 221 g~d~~v~Iw~~~t~e-hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~------s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLE-HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL------SYVETLYGHQDGVLGID 293 (479)
T ss_pred CCCceEEEecCcccc-hhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh------HHHHHHhCCccceeeec
Confidence 999999999999984 77889999999999999988888999999999999999987 77888999999999998
Q ss_pred EcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe-C
Q psy4876 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH-G 552 (609)
Q Consensus 474 ~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~-~ 552 (609)
...-+ .++.+|+ .|+++++|++.....+.-..+.+.+-+++|-.+..+ ++ |+++|.|.+|++...++++... .
T Consensus 294 aL~re-R~vtVGg--rDrT~rlwKi~eesqlifrg~~~sidcv~~In~~Hf-vs--GSdnG~IaLWs~~KKkplf~~~~A 367 (479)
T KOG0299|consen 294 ALSRE-RCVTVGG--RDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHF-VS--GSDNGSIALWSLLKKKPLFTSRLA 367 (479)
T ss_pred hhccc-ceEEecc--ccceeEEEeccccceeeeeCCCCCeeeEEEecccce-ee--ccCCceEEEeeecccCceeEeecc
Confidence 77654 4666654 899999999965554444445568889998877654 44 7799999999999888887653 2
Q ss_pred CC-----------CCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 553 HS-----------ARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 553 h~-----------~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
|. .+|++++..|...++++|+.+|.||+|.+.++-
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence 31 289999999999999999999999999999884
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-21 Score=183.25 Aligned_cols=249 Identities=18% Similarity=0.325 Sum_probs=192.1
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC----eeEEEecCCCCceEEEEe----cCCEEEEEecCCeEEEEEcC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAK----KKCRTMDGHDVRVGALAW----NTYILSSGSRCGNIVHHDVR 405 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~----~~~~L~sgs~dg~I~iwd~~ 405 (609)
|.+-|.++.|.+.|+.+|+|+.|++|+|||..+. .+....+.|.+.|..+.| -|+.+++++.|+++.||.-.
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~ 91 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQ 91 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeec
Confidence 7888999999999999999999999999996543 456677889999999999 37999999999999999763
Q ss_pred CCC--------eeEEEEccCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec-------CCccc
Q psy4876 406 SRD--------HKVALLQNHTQEVCGLKWSP--DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS-------RHQAA 468 (609)
Q Consensus 406 ~~~--------~~~~~~~~h~~~V~~l~~sp--dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-------~h~~~ 468 (609)
... ....++....+.|+.++|.| -|-.||+++.||.|+||+.-...........+.+. .+...
T Consensus 92 ~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~ 171 (361)
T KOG2445|consen 92 EKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQP 171 (361)
T ss_pred ccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCc
Confidence 211 23455667788999999999 57789999999999999976553333333444443 45667
Q ss_pred EEEEEEcCC--CCcEEEEEeccCC-----CeEEEEECCCCc----eeEEEc-CCCCeEEEEEcCC----CCeEEEEEecC
Q psy4876 469 VKAIAWCPW--SPNVLASGGGTAD-----RHIYFWNVSSGA----CLDSID-TKSQVCALLWNSD----YKELVSAHGFA 532 (609)
Q Consensus 469 V~~l~~sp~--~~~llasggGs~D-----g~I~iwd~~t~~----~~~~~~-~~~~v~sl~~s~~----g~~l~~~sG~~ 532 (609)
..|+.|+|. ...+|+.|. .+ +.++||....+. .+.++. +..+|+.++|.|+ +..|++++ .
T Consensus 172 ~~CvsWn~sr~~~p~iAvgs--~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~--k 247 (361)
T KOG2445|consen 172 CFCVSWNPSRMHEPLIAVGS--DEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT--K 247 (361)
T ss_pred ceEEeeccccccCceEEEEc--ccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee--c
Confidence 889999974 235788774 22 378888776433 223333 4469999999996 34566644 7
Q ss_pred CCeEEEEECCC--------------------CceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 533 QNQLIIWKYPS--------------------LVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 533 dg~I~Iwd~~~--------------------~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
|| |+||++.. -+.+..+.+|.+.|+.+.|+-.|..|++.|.||.||+|...-..
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence 88 99999862 13456678899999999999999999999999999999865433
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-21 Score=179.05 Aligned_cols=237 Identities=18% Similarity=0.259 Sum_probs=201.2
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
|+.+++.+.++.+|.+|.+++.|..+.||-..+|+.+.++.+|.+.|+|+.. +...+++|+.|.++++||+.++. .+
T Consensus 9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk-~l 87 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK-QL 87 (327)
T ss_pred CccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc-EE
Confidence 8999999999999999999999999999999999999999999999999887 57899999999999999999984 55
Q ss_pred EEEccCCCCeEEEEEccCCCEEEEEeC-----CCcEEEEeCCCCCC-CCCccceEeecCCcccEEEEEEcCCCCcEEEEE
Q psy4876 412 ALLQNHTQEVCGLKWSPDGRYLASGGN-----DNLLNIWSGVPGQH-TFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~lasgs~-----Dg~I~iwd~~~~~~-~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 485 (609)
..+. ....|..+.|+++|++++.+.. .+.|.++|++.... .....|...+..+...++.+-|.|-+..++ +|
T Consensus 88 a~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii-~G 165 (327)
T KOG0643|consen 88 ATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII-AG 165 (327)
T ss_pred EEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE-Ee
Confidence 5554 5678999999999998887754 36799999985431 122367888888999999999999886554 44
Q ss_pred eccCCCeEEEEECCCCcee-EEEc-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEe
Q psy4876 486 GGTADRHIYFWNVSSGACL-DSID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMS 563 (609)
Q Consensus 486 gGs~Dg~I~iwd~~t~~~~-~~~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~s 563 (609)
..||.|.+||+++|..+ .+.+ +...|+.++++++..++++ |+.|.+-++||..+.+.++++. ...+|++.+++
T Consensus 166 --he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT--~s~Dttakl~D~~tl~v~Kty~-te~PvN~aais 240 (327)
T KOG0643|consen 166 --HEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFIT--GSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAIS 240 (327)
T ss_pred --cCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEe--cccCccceeeeccceeeEEEee-ecccccceecc
Confidence 38999999999998654 4434 4459999999999999999 5589999999999999999886 45789999999
Q ss_pred CCCCEEEEEECCCCE
Q psy4876 564 PDETTVLSAGADETL 578 (609)
Q Consensus 564 pdg~~L~s~s~Dg~I 578 (609)
|....++.|+.....
T Consensus 241 P~~d~VilgGGqeA~ 255 (327)
T KOG0643|consen 241 PLLDHVILGGGQEAM 255 (327)
T ss_pred cccceEEecCCceee
Confidence 988888887765443
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-21 Score=181.62 Aligned_cols=297 Identities=19% Similarity=0.290 Sum_probs=219.9
Q ss_pred eeEEEEEecCC-C--eEEEEcCCeEEEEeCCCCC--CCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEc
Q psy4876 270 YYLNLIDWSHF-N--VLAVALGGSIYLWNGESDS--NSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWI 344 (609)
Q Consensus 270 ~~v~~l~wsp~-~--lla~s~dg~I~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~s 344 (609)
-.||.|+..+. + +|+++.||.|.+||++... +..+.++ ...|+ +..-.+-.|.-.|.++.|-
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~--------k~~c~-----v~~~h~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA--------KHKCI-----VAKQHENGHKYAISSAIWY 110 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee--------heeee-----ccccCCccceeeeeeeEEe
Confidence 45888888875 3 8889999999999998732 1111110 00110 0111111277889999999
Q ss_pred cC-CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec-----CCEEEEEecCCeEEEEEcCCCCeeEEEEccCC
Q psy4876 345 QE-GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN-----TYILSSGSRCGNIVHHDVRSRDHKVALLQNHT 418 (609)
Q Consensus 345 pd-g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~-----~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 418 (609)
|- .-.+.+++-|.+++|||..+-+....+. ..+.|.+-+|+ ..++++|.++-.|++.|+..+ ...+++.+|.
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr 188 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHR 188 (397)
T ss_pred eecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeeecccc
Confidence 94 4677889999999999999988777776 56677777773 357788888999999999998 5889999999
Q ss_pred CCeEEEEEccCCCE-EEEEeCCCcEEEEeCCCCCCC---------CCccceEeecCCcccEEEEEEcCCCCcEEEEEecc
Q psy4876 419 QEVCGLKWSPDGRY-LASGGNDNLLNIWSGVPGQHT---------FSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGT 488 (609)
Q Consensus 419 ~~V~~l~~spdg~~-lasgs~Dg~I~iwd~~~~~~~---------~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs 488 (609)
+.|.++.|+|...+ |++|+.||.|++||++..... .....+..-..|.+.|..++|..++.+++..|
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g--- 265 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG--- 265 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc---
Confidence 99999999997765 789999999999999865211 01112223456889999999999998777765
Q ss_pred CCCeEEEEECCCCceeE-EE---c----CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEE
Q psy4876 489 ADRHIYFWNVSSGACLD-SI---D----TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNL 560 (609)
Q Consensus 489 ~Dg~I~iwd~~t~~~~~-~~---~----~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l 560 (609)
.|..+++|+..+|+... .+ - .+-.+. +. +-+...++..- .++.+.++.+-++..+..+..|-..|.|.
T Consensus 266 td~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p--~~~~lall~~~sgs~ir~l~~h~k~i~c~ 341 (397)
T KOG4283|consen 266 TDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFP--NDGSLALLNLLEGSFVRRLSTHLKRINCA 341 (397)
T ss_pred CccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEe--cCCeEEEEEccCceEEEeeecccceeeEE
Confidence 69999999999876321 11 0 111222 23 44444444432 46999999999999999999999999999
Q ss_pred EEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 561 AMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 561 ~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
++-|+=+...++..|+.|..|-..-..+
T Consensus 342 ~~~~~fq~~~tg~~d~ni~~w~p~l~~p 369 (397)
T KOG4283|consen 342 AYRPDFEQCFTGDMNGNIYMWSPALKSP 369 (397)
T ss_pred eecCchhhhhccccCCccccccccccCC
Confidence 9999999999999999999998844333
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-21 Score=193.88 Aligned_cols=278 Identities=14% Similarity=0.244 Sum_probs=221.4
Q ss_pred eeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
..|++|.|+|.. ++++|.|+.++||.+.. ..-..+..+. ...+|.+.+|.|+
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDG-------------------------k~N~~lqS~~l~~fPi~~a~f~p~ 268 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDG-------------------------KVNPKLQSIHLEKFPIQKAEFAPN 268 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecC-------------------------ccChhheeeeeccCccceeeecCC
Confidence 348999999985 78899999999999986 3334455555 6789999999999
Q ss_pred CC-EEEEEeCCCeEEEEeCCCCeeEE--EecCCCC-ceEE--EEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCC
Q psy4876 347 GY-MLGVGTSLGTVQLWDVSAKKKCR--TMDGHDV-RVGA--LAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQE 420 (609)
Q Consensus 347 g~-~Lasgs~dg~I~iwd~~~~~~~~--~l~~h~~-~V~~--l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~ 420 (609)
|. .+++++....+..||+.+.+... .+.++.. .+.. ++-++.+|+..+..|.|.+....+++ .+..++ ..+.
T Consensus 269 G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e-li~s~K-ieG~ 346 (514)
T KOG2055|consen 269 GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE-LITSFK-IEGV 346 (514)
T ss_pred CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh-hhheee-eccE
Confidence 97 88899998999999999876433 3334432 2222 33368899999999999999988874 555554 5678
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccE--EEEEEcCCCCcEEEEEeccCCCeEEEEEC
Q psy4876 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAV--KAIAWCPWSPNVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V--~~l~~sp~~~~llasggGs~Dg~I~iwd~ 498 (609)
|..++|+.|++.|++++.+|.|++||++.. .+++.+.. .+.| +.++.++++. +||+| +..|.|.|||.
T Consensus 347 v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~------~~~~rf~D-~G~v~gts~~~S~ng~-ylA~G--S~~GiVNIYd~ 416 (514)
T KOG2055|consen 347 VSDFTFSSDSKELLASGGTGEVYVWNLRQN------SCLHRFVD-DGSVHGTSLCISLNGS-YLATG--SDSGIVNIYDG 416 (514)
T ss_pred EeeEEEecCCcEEEEEcCCceEEEEecCCc------ceEEEEee-cCccceeeeeecCCCc-eEEec--cCcceEEEecc
Confidence 999999999999999999999999999987 67777754 3334 5566668774 78886 69999999997
Q ss_pred CC------CceeEEEc-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC---CCCEEEEEEeCCCCE
Q psy4876 499 SS------GACLDSID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH---SARVLNLAMSPDETT 568 (609)
Q Consensus 499 ~t------~~~~~~~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h---~~~V~~l~~spdg~~ 568 (609)
.+ .+++..+. .-..|+++.|+++...|+.++....+.+++..+++......+... -+.|+||+|+|.|.+
T Consensus 417 ~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~ 496 (514)
T KOG2055|consen 417 NSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGY 496 (514)
T ss_pred chhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCce
Confidence 53 23444443 245899999999999999998888999999999998877766543 356999999999999
Q ss_pred EEEEECCCCEEEEEcC
Q psy4876 569 VLSAGADETLRLWKIF 584 (609)
Q Consensus 569 L~s~s~Dg~I~iWdl~ 584 (609)
||.|..+|.|.+|.+.
T Consensus 497 lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 497 LAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEeecCCCceeeEeec
Confidence 9999999999999974
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.7e-22 Score=200.03 Aligned_cols=251 Identities=18% Similarity=0.346 Sum_probs=191.3
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|+++.|++.+ +|+++.....+|+|-... .+..|...+.-+..+.... |...++|.+|+|
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~---------------~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP 278 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGF---------------EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHP 278 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCc---------------eeeeeeccchhhhhhhccCCceeeeecccccc
Confidence 3458999999975 888888899999997651 1222222222233333333 889999999999
Q ss_pred CC-CEEEEEeCCCeEEEEeCCCCe-eEEEec-----CCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCC--eeEEEE
Q psy4876 346 EG-YMLGVGTSLGTVQLWDVSAKK-KCRTMD-----GHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRD--HKVALL 414 (609)
Q Consensus 346 dg-~~Lasgs~dg~I~iwd~~~~~-~~~~l~-----~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~--~~~~~~ 414 (609)
+. ..+++++.||+++|||+...+ .+..+. +..-.++.++| ++..|++|+.||.|.+|+..... .....-
T Consensus 279 ~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk 358 (641)
T KOG0772|consen 279 DNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK 358 (641)
T ss_pred CcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEee
Confidence 86 678899999999999998653 223332 34457888999 58899999999999999986542 223444
Q ss_pred ccCCC--CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCc--ccEEEEEEcCCCCcEEEEEe----
Q psy4876 415 QNHTQ--EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQ--AAVKAIAWCPWSPNVLASGG---- 486 (609)
Q Consensus 415 ~~h~~--~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~--~~V~~l~~sp~~~~llasgg---- 486 (609)
..|.. .|+||+||+||++|++-+.|+++++||+++.+ +++....+-. -+-+.++|+|+. .|+++|.
T Consensus 359 ~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k-----kpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~ 432 (641)
T KOG0772|consen 359 DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK-----KPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPN 432 (641)
T ss_pred eccCCCCceeEEEeccccchhhhccCCCceeeeeccccc-----cchhhhcCCCccCCCCccccCCCc-eEEEecccccC
Confidence 56776 99999999999999999999999999999874 5666555433 245788999987 5777764
Q ss_pred ccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q psy4876 487 GTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~ 542 (609)
|...+.+.+||..+-..+..+... ..|..+.|+|.-+.+++++ .||.++||--+
T Consensus 433 ~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gs--gdG~~~vyYdp 487 (641)
T KOG0772|consen 433 GMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGS--GDGTAHVYYDP 487 (641)
T ss_pred CCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeec--CCCceEEEECc
Confidence 344678999999999999988765 4899999999999999954 68999988544
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.4e-20 Score=185.66 Aligned_cols=273 Identities=20% Similarity=0.312 Sum_probs=215.8
Q ss_pred ceeEEEEEecCC--CeEEEEcCCeEEEEeCCCCCCCceEEecCCcccccccccccccccee-eeeeec--CCCCeEEEEE
Q psy4876 269 DYYLNLIDWSHF--NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAID-HLMDLE--GNENVCSVAW 343 (609)
Q Consensus 269 ~~~v~~l~wsp~--~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~--h~~~V~~v~~ 343 (609)
.-.|....|+|. +++.....+.+++|+.+. +.+. ....++ ....|.||+|
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~-------------------------~~l~k~~~~fek~ekk~Vl~v~F 254 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGKGHLYFWTLRG-------------------------GSLVKRQGIFEKREKKFVLCVTF 254 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCCceEEEEEccC-------------------------CceEEEeeccccccceEEEEEEE
Confidence 334778999996 588888889999999988 3332 222233 4578999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCC--------------
Q psy4876 344 IQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSR-------------- 407 (609)
Q Consensus 344 spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~-------------- 407 (609)
.++|+. ++|.++|.|.||+..+.+..+....|.+.|.+++. +|.+| +|+.|..|..||-.-.
T Consensus 255 ~engdv-iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~i 332 (626)
T KOG2106|consen 255 LENGDV-ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPI 332 (626)
T ss_pred cCCCCE-EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCe
Confidence 999975 57999999999999888877777799999999998 55555 5999999999983210
Q ss_pred --------C-----------------eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee
Q psy4876 408 --------D-----------------HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL 462 (609)
Q Consensus 408 --------~-----------------~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~ 462 (609)
+ .......+|..+...++.+|+.+++++++.|+.+++|+ .. +++...
T Consensus 333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~------k~~wt~ 404 (626)
T KOG2106|consen 333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH------KLEWTK 404 (626)
T ss_pred eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CC------ceeEEE
Confidence 0 00122346888999999999999999999999999999 22 343333
Q ss_pred cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q psy4876 463 SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 463 ~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~ 542 (609)
. -..++.|+.|+|.| .++.| +..|...+.|+++...+.......++..+.|+|+|.+|++ |+.|+.|+||.+.
T Consensus 405 ~-~~d~~~~~~fhpsg--~va~G--t~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAv--gs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 405 I-IEDPAECADFHPSG--VVAVG--TATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAV--GSHDNHIYIYRVS 477 (626)
T ss_pred E-ecCceeEeeccCcc--eEEEe--eccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEE--ecCCCeEEEEEEC
Confidence 2 35678899999988 66666 5899999999999777766666789999999999999999 6699999999986
Q ss_pred C-CceEEEE-eCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEc
Q psy4876 543 S-LVKVAEL-HGHSARVLNLAMSPDETTVLSAGADETLRLWKI 583 (609)
Q Consensus 543 ~-~~~~~~l-~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl 583 (609)
. +.+.... +.|..+|+.+.|++|+++|.+-+.|-.|.+|.-
T Consensus 478 ~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 478 ANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred CCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 4 4444433 234489999999999999999999999999943
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=194.60 Aligned_cols=284 Identities=17% Similarity=0.269 Sum_probs=213.0
Q ss_pred eEEEEEecCCC---eEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 271 YLNLIDWSHFN---VLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 271 ~v~~l~wsp~~---lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
.|.+++|+|.. ++| |...|.|-+||+.+.. .....+.-+. |..+|.++.|+|
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~-----------------------~d~d~v~~f~~hs~~Vs~l~F~P 244 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE-----------------------KDKDGVYLFTPHSGPVSGLKFSP 244 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecCCCC-----------------------CccCceEEeccCCccccceEecC
Confidence 38899999962 454 5567999999996311 2222333344 899999999999
Q ss_pred CC-CEEEEEeCCCeEEEEeCCCCeeEE--EecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCC
Q psy4876 346 EG-YMLGVGTSLGTVQLWDVSAKKKCR--TMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQE 420 (609)
Q Consensus 346 dg-~~Lasgs~dg~I~iwd~~~~~~~~--~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~ 420 (609)
.. ..+++.+.||+|++-|++.+.... .+......+..+.| ....++.|..-|...+||+++.......+..|...
T Consensus 245 ~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK 324 (498)
T KOG4328|consen 245 ANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK 324 (498)
T ss_pred CChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence 76 788899999999999998764333 33334455666667 34566677777799999999988778888899999
Q ss_pred eEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC
Q psy4876 421 VCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS 499 (609)
Q Consensus 421 V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~ 499 (609)
|++|+++| ...+||+++.|++++|||++...... .++.....|...|.+..|+|.+..|+.++ .|..|+|||..
T Consensus 325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~--sp~lst~~HrrsV~sAyFSPs~gtl~TT~---~D~~IRv~dss 399 (498)
T KOG4328|consen 325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA--SPFLSTLPHRRSVNSAYFSPSGGTLLTTC---QDNEIRVFDSS 399 (498)
T ss_pred cceeecCCCCchheeecccCcceeeeehhhhcCCC--CcceecccccceeeeeEEcCCCCceEeec---cCCceEEeecc
Confidence 99999999 45579999999999999999764322 13445557999999999999999977765 89999999983
Q ss_pred ----CCceeEEEcCCC------CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCC-CEEE-EEEeCCCC
Q psy4876 500 ----SGACLDSIDTKS------QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSA-RVLN-LAMSPDET 567 (609)
Q Consensus 500 ----t~~~~~~~~~~~------~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~-~V~~-l~~spdg~ 567 (609)
.-.+..++.+.. ......|.|+..++++ |..-..|-|||-..++.+.++.+... .|.+ ..|+|-+.
T Consensus 400 ~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~v--g~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~ 477 (498)
T KOG4328|consen 400 CISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVV--GRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRD 477 (498)
T ss_pred cccccCCccceeeccCcccccccchhheeCCCccEEEE--eccCcceeEEcCCCCEEeeeccCccccccccceeeccccc
Confidence 334455554432 3456789999999888 55777899999988888888765443 4444 47999888
Q ss_pred EEEEE-ECCCCEEEEEcC
Q psy4876 568 TVLSA-GADETLRLWKIF 584 (609)
Q Consensus 568 ~L~s~-s~Dg~I~iWdl~ 584 (609)
.+++| +.-|.|.||--.
T Consensus 478 ~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 478 TLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ceeccCCccceEEEEecC
Confidence 55554 556788887543
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=196.68 Aligned_cols=260 Identities=22% Similarity=0.350 Sum_probs=210.9
Q ss_pred EEEEEecCCC-eEE--EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHFN-VLA--VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~~-lla--~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
++.+.|+..+ +++ .+.|..|++|.-... .+.+..+... ..+.-.||+......
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-----------------------~~~Vp~~~k~-~gd~~~Cv~~~s~S~ 92 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-----------------------TPEVPRVRKL-TGDNAFCVACASQSL 92 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCC-----------------------CCccceeecc-ccchHHHHhhhhcce
Confidence 6779999987 444 344778999975541 0223333333 333555666666668
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEcc-CCCCeEEEE
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQN-HTQEVCGLK 425 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~-h~~~V~~l~ 425 (609)
|+++|+..+.|+|||++...+.+.+.+|...|+++.+| ..+|++++..|.|.|+.+.++. ....+.. ..+.|.-+.
T Consensus 93 y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~-~tt~f~~~sgqsvRll~ 171 (673)
T KOG4378|consen 93 YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ-KTTTFTIDSGQSVRLLR 171 (673)
T ss_pred eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc-cccceecCCCCeEEEee
Confidence 99999999999999999877888999999999999995 6899999999999999999874 3344443 356677899
Q ss_pred EccCCC-EEEEEeCCCcEEEEeCCCCCCCCCccceE-eecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce
Q psy4876 426 WSPDGR-YLASGGNDNLLNIWSGVPGQHTFSTQPIH-SLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC 503 (609)
Q Consensus 426 ~spdg~-~lasgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~ 503 (609)
|++..+ +|.+++.+|.|.+||+... .+++ -...|.++...|+|+|....||++-| .|..|.+||+.....
T Consensus 172 ys~skr~lL~~asd~G~VtlwDv~g~------sp~~~~~~~HsAP~~gicfspsne~l~vsVG--~Dkki~~yD~~s~~s 243 (673)
T KOG4378|consen 172 YSPSKRFLLSIASDKGAVTLWDVQGM------SPIFHASEAHSAPCRGICFSPSNEALLVSVG--YDKKINIYDIRSQAS 243 (673)
T ss_pred cccccceeeEeeccCCeEEEEeccCC------CcccchhhhccCCcCcceecCCccceEEEec--ccceEEEeecccccc
Confidence 999766 5677899999999999876 4444 34679999999999999999999886 999999999999888
Q ss_pred eEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceEEEEeCCCCCEEEEEEeCCC
Q psy4876 504 LDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS-LVKVAELHGHSARVLNLAMSPDE 566 (609)
Q Consensus 504 ~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~-~~~~~~l~~h~~~V~~l~~spdg 566 (609)
...+....+...++|.++|.+|++ |...|.|..||++. ..++..+..|...|++++|-|..
T Consensus 244 ~~~l~y~~Plstvaf~~~G~~L~a--G~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 244 TDRLTYSHPLSTVAFSECGTYLCA--GNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cceeeecCCcceeeecCCceEEEe--ecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 888888899999999999999999 77899999999986 45788889999999999998764
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.8e-21 Score=198.68 Aligned_cols=285 Identities=18% Similarity=0.267 Sum_probs=213.3
Q ss_pred EEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeee-cCCCCeEEEEEccC----
Q psy4876 274 LIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL-EGNENVCSVAWIQE---- 346 (609)
Q Consensus 274 ~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~h~~~V~~v~~spd---- 346 (609)
.+.|++.+ +..+-.|..+||||+..... .-....+ -|...|++|.--|.
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~k------------------------vgk~~s~lyHS~ciW~Ve~~p~nv~~ 384 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNK------------------------VGKCSSMLYHSACIWDVENLPCNVHS 384 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEecccccc------------------------ccceeeeeeccceeeeeccccccccC
Confidence 47788753 66678899999999987311 1111111 15555555554441
Q ss_pred -------CCEEEEEeCCCeEEEEeCCCCeeEEEe-------------------------------------cCCCCceEE
Q psy4876 347 -------GYMLGVGTSLGTVQLWDVSAKKKCRTM-------------------------------------DGHDVRVGA 382 (609)
Q Consensus 347 -------g~~Lasgs~dg~I~iwd~~~~~~~~~l-------------------------------------~~h~~~V~~ 382 (609)
...+++++.|++|++||++.+..-..+ -+....+.+
T Consensus 385 ~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~ 464 (1080)
T KOG1408|consen 385 PTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRA 464 (1080)
T ss_pred cccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEE
Confidence 124789999999999999753111100 012245677
Q ss_pred EEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEcc---CCCEEEEEeCCCcEEEEeCCCCCCCCCcc
Q psy4876 383 LAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSP---DGRYLASGGNDNLLNIWSGVPGQHTFSTQ 457 (609)
Q Consensus 383 l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp---dg~~lasgs~Dg~I~iwd~~~~~~~~~~~ 457 (609)
++. ++.+|++|.+-|+|+||++... .....+..|..+|.|+.++. ..++||+++.|..|+|||+... ..
T Consensus 465 ~~vSp~gqhLAsGDr~GnlrVy~Lq~l-~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-----y~ 538 (1080)
T KOG1408|consen 465 LAVSPDGQHLASGDRGGNLRVYDLQEL-EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-----YD 538 (1080)
T ss_pred EEECCCcceecccCccCceEEEEehhh-hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-----cc
Confidence 777 6899999999999999999876 46677889999999999986 4568999999999999999765 36
Q ss_pred ceEeecCCcccEEEEEEcCCCCc-EEEEEeccCCCeEEEEECCCCceeEEE------cCCCCeEEEEEcCCCCeEEEEEe
Q psy4876 458 PIHSLSRHQAAVKAIAWCPWSPN-VLASGGGTADRHIYFWNVSSGACLDSI------DTKSQVCALLWNSDYKELVSAHG 530 (609)
Q Consensus 458 ~~~~~~~h~~~V~~l~~sp~~~~-llasggGs~Dg~I~iwd~~t~~~~~~~------~~~~~v~sl~~s~~g~~l~~~sG 530 (609)
++.++.+|...|+++.|.-.|.+ -++++| .|+.|.+--.+.......+ ..+..+..++..|..+++++++
T Consensus 539 l~qtld~HSssITsvKFa~~gln~~MiscG--ADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c- 615 (1080)
T KOG1408|consen 539 LVQTLDGHSSSITSVKFACNGLNRKMISCG--ADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC- 615 (1080)
T ss_pred hhhhhcccccceeEEEEeecCCceEEEecc--CchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe-
Confidence 78899999999999999877632 344443 6877765433321111111 1245789999999999999965
Q ss_pred cCCCeEEEEECCCCceEEEEeC---CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhh
Q psy4876 531 FAQNQLIIWKYPSLVKVAELHG---HSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKK 592 (609)
Q Consensus 531 ~~dg~I~Iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~ 592 (609)
.|..|+||++.+++..+.|++ |++....+...|.|-||++.+.|.+|.|+|+..++....-
T Consensus 616 -QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m 679 (1080)
T KOG1408|consen 616 -QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM 679 (1080)
T ss_pred -cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence 899999999999999999965 6778889999999999999999999999999999876543
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-21 Score=182.88 Aligned_cols=279 Identities=17% Similarity=0.248 Sum_probs=211.5
Q ss_pred EEEEEecCCC-eEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCE
Q psy4876 272 LNLIDWSHFN-VLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYM 349 (609)
Q Consensus 272 v~~l~wsp~~-lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~ 349 (609)
-+|+.|++.| +|| |+.||.|.|||..+ ..+..+..- |..+|++++||+||+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-------------------------~~iar~lsa-H~~pi~sl~WS~dgr~ 79 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT-------------------------FRIARMLSA-HVRPITSLCWSRDGRK 79 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc-------------------------cchhhhhhc-cccceeEEEecCCCCE
Confidence 5789999987 444 77899999999988 443332222 8999999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecC---CEEEEEecCCeEEEEEcCCCCeeEEEEccC---CCCeEE
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT---YILSSGSRCGNIVHHDVRSRDHKVALLQNH---TQEVCG 423 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~---~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h---~~~V~~ 423 (609)
|++++.|..|.+||+..|.+++.+. ...+|+...|++ +..++.-.+..-.+-++..+.+.+...... ...-.+
T Consensus 80 LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~ 158 (405)
T KOG1273|consen 80 LLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASH 158 (405)
T ss_pred eeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccc
Confidence 9999999999999999999988887 778999999953 344444334445555555432222221111 112223
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCc-ccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC-
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQ-AAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG- 501 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~- 501 (609)
..|.+.|+++++|...|.+.++|..+. +++..+.... ..|+.+.++-.|..++.- +.|+.|+.|++..-
T Consensus 159 ~~fdr~g~yIitGtsKGkllv~~a~t~------e~vas~rits~~~IK~I~~s~~g~~liiN---tsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 159 GVFDRRGKYIITGTSKGKLLVYDAETL------ECVASFRITSVQAIKQIIVSRKGRFLIIN---TSDRVIRTYEISDID 229 (405)
T ss_pred ccccCCCCEEEEecCcceEEEEecchh------eeeeeeeechheeeeEEEEeccCcEEEEe---cCCceEEEEehhhhc
Confidence 468899999999999999999999987 6666665554 789999999988766665 47999999998621
Q ss_pred ------cee--EEE---cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCC-CCEEEEEEeCCCCEE
Q psy4876 502 ------ACL--DSI---DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHS-ARVLNLAMSPDETTV 569 (609)
Q Consensus 502 ------~~~--~~~---~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~L 569 (609)
+.. +.+ -...+-.+++|+.+|.|+++++ .....++||.-..|..++.+.|.. ....++.|+|-...|
T Consensus 230 ~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s-~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i 308 (405)
T KOG1273|consen 230 DEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS-ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPII 308 (405)
T ss_pred ccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc-ccceeEEEEecCCcceeeeecCCchhheeecccccceeee
Confidence 111 111 1223567899999999999876 477889999999999999999877 668899999999988
Q ss_pred EEEECCCCEEEEEcCCCcc
Q psy4876 570 LSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 570 ~s~s~Dg~I~iWdl~~~~~ 588 (609)
++- +.|.|+||.....+.
T Consensus 309 ~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 309 ASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred eec-cCCceEEEEeecccc
Confidence 888 779999999876554
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-21 Score=192.12 Aligned_cols=246 Identities=24% Similarity=0.426 Sum_probs=190.5
Q ss_pred CCeEEEEEccC-------CCEEEEEeCCCeEEEEeCCCCee---------------------EEEecCCCCceEEEEec-
Q psy4876 336 ENVCSVAWIQE-------GYMLGVGTSLGTVQLWDVSAKKK---------------------CRTMDGHDVRVGALAWN- 386 (609)
Q Consensus 336 ~~V~~v~~spd-------g~~Lasgs~dg~I~iwd~~~~~~---------------------~~~l~~h~~~V~~l~~~- 386 (609)
....|++|... |+|+|+|+.|..|.|||+.-... -....+|+..|..++|+
T Consensus 174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~ 253 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR 253 (463)
T ss_pred CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc
Confidence 34457777432 58999999999999999863110 11234699999999996
Q ss_pred --CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec
Q psy4876 387 --TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS 463 (609)
Q Consensus 387 --~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~ 463 (609)
.++|++|+.|.+|++||+.++ .+..++..|+..|.++.|+| ...+|++|+.|++|.+.|.+... .....-
T Consensus 254 ~~~nVLaSgsaD~TV~lWD~~~g-~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~------~s~~~w 326 (463)
T KOG0270|consen 254 NFRNVLASGSADKTVKLWDVDTG-KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS------NSGKEW 326 (463)
T ss_pred ccceeEEecCCCceEEEEEcCCC-CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc------ccCceE
Confidence 589999999999999999998 47788888999999999999 67789999999999999999532 111111
Q ss_pred CCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC-CceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 464 RHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS-GACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 464 ~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t-~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
.-.+.|..++|.|...+.++++ +.||+|+-+|++. ++++.++..| ..|.+++++..-..+++. ++.++.|++|++
T Consensus 327 k~~g~VEkv~w~~~se~~f~~~--tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t-~s~d~~Vklw~~ 403 (463)
T KOG0270|consen 327 KFDGEVEKVAWDPHSENSFFVS--TDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLST-ASTDKVVKLWKF 403 (463)
T ss_pred EeccceEEEEecCCCceeEEEe--cCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceee-ccccceEEEEee
Confidence 2356799999999998888886 5999999999995 4888888765 599999999998887776 558999999998
Q ss_pred CCCce--EEEEeCCCCCEEEEEEeCCCC-EEEEEECCCCEEEEEcCCCccchh
Q psy4876 542 PSLVK--VAELHGHSARVLNLAMSPDET-TVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 542 ~~~~~--~~~l~~h~~~V~~l~~spdg~-~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
..-.. +..-.-.-++..|.++.|+-. +++.||..+.++|||+.+.....+
T Consensus 404 ~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 404 DVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred cCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence 64332 211111124566777778654 667788888899999998776544
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-22 Score=210.07 Aligned_cols=243 Identities=20% Similarity=0.373 Sum_probs=193.6
Q ss_pred eeEEEEEecCC--Ce-EEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 270 YYLNLIDWSHF--NV-LAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 270 ~~v~~l~wsp~--~l-la~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
+.++.|.|+.- ++ ++++..|.|.+||+... .+-..+..+. |...|.++.|++
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~------------------------~rnk~l~~f~EH~Rs~~~ldfh~ 143 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKS------------------------IRNKLLTVFNEHERSANKLDFHS 143 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCcc------------------------ccchhhhHhhhhccceeeeeecc
Confidence 34667899853 44 45777899999999761 2233444555 999999999998
Q ss_pred CC-CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCe
Q psy4876 346 EG-YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEV 421 (609)
Q Consensus 346 dg-~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 421 (609)
.. .+|++|+.||.|++||++..+...++.+....|..+.|. ++.|+++...|.+.+||++........+.+|.++|
T Consensus 144 tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV 223 (839)
T KOG0269|consen 144 TEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV 223 (839)
T ss_pred CCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce
Confidence 65 899999999999999999999999999999999999994 68999999999999999999888888899999999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 422 CGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 422 ~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
.|+.|+|++.+||+||.|++|+|||..+... .++.++. ...+|.+|.|-|...+.|+++.--.|-.|+|||++..
T Consensus 224 ~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~----~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 224 LCLNWHPNREWLATGGRDKMVKIWDMTDSRA----KPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred EEEeecCCCceeeecCCCccEEEEeccCCCc----cceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 9999999999999999999999999987632 3444443 3578999999999999998876446899999999854
Q ss_pred c-eeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q psy4876 502 A-CLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 502 ~-~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~ 542 (609)
- +..++..| ..++.++|......++.. ++.|+.|..-.++
T Consensus 299 YIP~~t~~eH~~~vt~i~W~~~d~~~l~s-~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 299 YIPYATFLEHTDSVTGIAWDSGDRINLWS-CSKDGTVLQHLFK 340 (839)
T ss_pred cccceeeeccCccccceeccCCCceeeEe-ecCccHHHHhhhh
Confidence 3 44555554 467888887643333332 3467766554433
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-21 Score=201.18 Aligned_cols=236 Identities=26% Similarity=0.404 Sum_probs=202.4
Q ss_pred eeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeE--EEecCCCCceEE-EEe---cCCEEEEEecCCeEE
Q psy4876 328 HLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKC--RTMDGHDVRVGA-LAW---NTYILSSGSRCGNIV 400 (609)
Q Consensus 328 ~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~--~~l~~h~~~V~~-l~~---~~~~L~sgs~dg~I~ 400 (609)
..+++. |...|..++..++. .+++++.||++++|+-..++.+ ..+.+|.+.|.. +++ ++..|++|+.|.+|.
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred eEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 344556 88899888877554 7888999999999998665544 346677777776 777 346799999999999
Q ss_pred EEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCc
Q psy4876 401 HHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPN 480 (609)
Q Consensus 401 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 480 (609)
+|...+. .+..++.+|...||++....++. +++|+.|.++++|-.. ++...+.+|+..|.+++.-|.+
T Consensus 85 v~~~~~~-~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--------~l~~~l~gH~asVWAv~~l~e~-- 152 (745)
T KOG0301|consen 85 VFKLSQA-EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--------ELVYSLQGHTASVWAVASLPEN-- 152 (745)
T ss_pred EEecCCC-CchhhhhccccceeeeecCCcCc-eEecccccceEEecch--------hhhcccCCcchheeeeeecCCC--
Confidence 9999987 58899999999999999888887 9999999999999875 5667799999999999999976
Q ss_pred EEEEEeccCCCeEEEEECCCCceeEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEE
Q psy4876 481 VLASGGGTADRHIYFWNVSSGACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLN 559 (609)
Q Consensus 481 llasggGs~Dg~I~iwd~~t~~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~ 559 (609)
.+++| +.|+.|++|.- +++++++.+|. -|+.+++-+++.++-+ + .||.|++|++ +++++.++.+|+.-|.+
T Consensus 153 ~~vTg--saDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flSc--s-NDg~Ir~w~~-~ge~l~~~~ghtn~vYs 224 (745)
T KOG0301|consen 153 TYVTG--SADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSC--S-NDGSIRLWDL-DGEVLLEMHGHTNFVYS 224 (745)
T ss_pred cEEec--cCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEee--c-CCceEEEEec-cCceeeeeeccceEEEE
Confidence 67776 48999999985 78889998775 7999999998776654 2 7999999999 89999999999999999
Q ss_pred EEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 560 LAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 560 l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
++...++..++++|+|++++||+..
T Consensus 225 is~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 225 ISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEecCCCCeEEEecCCceEEEeecC
Confidence 9988889999999999999999987
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=213.61 Aligned_cols=231 Identities=22% Similarity=0.384 Sum_probs=208.4
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
|...|.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|+ ..+|++|+.+|+|++||+... +.+
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA-k~v 105 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA-KIV 105 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh-hhh
Confidence 77888888887778999999999999999998888888899999999999995 678999999999999999986 578
Q ss_pred EEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 412 ALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
+++.+|...++++.|+|-+.++|+|+.|..+.+||++.. .+.+.+.+|...|..+.|+|+| .+++.|+ .|.
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~------Gc~~~~~s~~~vv~~l~lsP~G-r~v~~g~--ed~ 176 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK------GCSHTYKSHTRVVDVLRLSPDG-RWVASGG--EDN 176 (825)
T ss_pred hhhhccccCcceeeeccceEEeccccccccceehhhhcc------CceeeecCCcceeEEEeecCCC-ceeeccC--Ccc
Confidence 899999999999999999999999999999999999965 6889999999999999999998 4667764 799
Q ss_pred eEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEE
Q psy4876 492 HIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVL 570 (609)
Q Consensus 492 ~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~ 570 (609)
.++|||+..|+.+..|..+ ..+.++.|+|..-+++. |+.|++|++||+++.+.+.........|.+++|+|++..++
T Consensus 177 tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~--Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 177 TVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAP--GSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred eeeeecccccccccccccccccccccccCchhhhhcc--CCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeee
Confidence 9999999999999999855 58999999998877777 77999999999999999988888889999999999999988
Q ss_pred EEECCC
Q psy4876 571 SAGADE 576 (609)
Q Consensus 571 s~s~Dg 576 (609)
+|..+.
T Consensus 255 ~G~q~s 260 (825)
T KOG0267|consen 255 SGEQIS 260 (825)
T ss_pred cCchhh
Confidence 886653
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.3e-21 Score=182.85 Aligned_cols=252 Identities=15% Similarity=0.300 Sum_probs=212.3
Q ss_pred ceeeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEE
Q psy4876 325 AIDHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVH 401 (609)
Q Consensus 325 ~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~i 401 (609)
....+.++. |.+.|..++-......+.+++.|.+.+||.++++.++..+.+|.+.|.+|.|+ +.++++++.|++-.|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 344555666 99999999998888899999999999999999999999999999999999994 689999999999999
Q ss_pred EEc------CCC---------------------------------CeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcE
Q psy4876 402 HDV------RSR---------------------------------DHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLL 442 (609)
Q Consensus 402 wd~------~~~---------------------------------~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I 442 (609)
|.. ... ..++..+.+|...|.+..|...|+.+++++.|.+.
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 962 110 02345677899999999999999999999999999
Q ss_pred EEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC-ceeEEEcCC-CCeEEEEEcC
Q psy4876 443 NIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG-ACLDSIDTK-SQVCALLWNS 520 (609)
Q Consensus 443 ~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~-~~~~~~~~~-~~v~sl~~s~ 520 (609)
.+||++++ .++..+.+|....+.++-+|.+ .|+++. +.|.+.++||.+.. ..+..|.++ ..|+++.|..
T Consensus 297 nlwDVEtg------e~v~~LtGHd~ELtHcstHptQ-rLVvTs--SrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~ 367 (481)
T KOG0300|consen 297 NLWDVETG------EVVNILTGHDSELTHCSTHPTQ-RLVVTS--SRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT 367 (481)
T ss_pred eeeeeccC------ceeccccCcchhccccccCCcc-eEEEEe--ccCceeEeccchhhcceeeeecccccceeEEEEec
Confidence 99999999 8999999999999999999977 566665 58999999999832 345666666 4899999998
Q ss_pred CCCeEEEEEecCCCeEEEEECCCCc-eEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 521 DYKELVSAHGFAQNQLIIWKYPSLV-KVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 521 ~g~~l~~~sG~~dg~I~Iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
+.+.+ + |++|.+|+|||++++. ++.+++ ...+++.++.+..++.|+.--.+..|++||+.+....
T Consensus 368 dd~vV-S--gSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 368 DDRVV-S--GSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA 433 (481)
T ss_pred CCcee-e--cCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccc
Confidence 87653 3 7799999999998875 455554 5578899999988888888888899999999876543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-19 Score=183.18 Aligned_cols=253 Identities=13% Similarity=0.094 Sum_probs=185.4
Q ss_pred EEEEEecCCC--eE-EEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHFN--VL-AVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~~--ll-a~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
+..++|+|++ ++ +++.++.|++||..+ +.... .+.....+..++|+|+++
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-------------------------~~~~~--~~~~~~~~~~~~~~~~g~ 85 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLAT-------------------------GEVIG--TLPSGPDPELFALHPNGK 85 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCC-------------------------CcEEE--eccCCCCccEEEECCCCC
Confidence 3468999986 33 345679999999987 44322 233223456889999998
Q ss_pred EEEEE-eCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCC-eEEEEEcCCCCeeEEEEccCCCCeEEE
Q psy4876 349 MLGVG-TSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCG-NIVHHDVRSRDHKVALLQNHTQEVCGL 424 (609)
Q Consensus 349 ~Lasg-s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg-~I~iwd~~~~~~~~~~~~~h~~~V~~l 424 (609)
.++++ ..++.|.+||+.+++.+..+.. ...+.+++| ++.+++++..++ .+.+||..+.. ...... ....+.++
T Consensus 86 ~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~-~~~~~~-~~~~~~~~ 162 (300)
T TIGR03866 86 ILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE-IVDNVL-VDQRPRFA 162 (300)
T ss_pred EEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe-EEEEEE-cCCCccEE
Confidence 77665 4689999999998887777763 334577888 578888888765 46778988763 333322 23456789
Q ss_pred EEccCCCEEEEE-eCCCcEEEEeCCCCCCCCCccceEeecCC-------cccEEEEEEcCCCCcEEEEEeccCCCeEEEE
Q psy4876 425 KWSPDGRYLASG-GNDNLLNIWSGVPGQHTFSTQPIHSLSRH-------QAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496 (609)
Q Consensus 425 ~~spdg~~lasg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~llasggGs~Dg~I~iw 496 (609)
+|+++|++|+++ ..++.|++||+.++ +.+..+..+ ......++|+|++..++++.+ .++.|.+|
T Consensus 163 ~~s~dg~~l~~~~~~~~~v~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~--~~~~i~v~ 234 (300)
T TIGR03866 163 EFTADGKELWVSSEIGGTVSVIDVATR------KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG--PANRVAVV 234 (300)
T ss_pred EECCCCCEEEEEcCCCCEEEEEEcCcc------eeeeeeeecccccccccCCccceEECCCCCEEEEEcC--CCCeEEEE
Confidence 999999988654 46899999999987 333333211 112346889999987666543 46789999
Q ss_pred ECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeC
Q psy4876 497 NVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP 564 (609)
Q Consensus 497 d~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp 564 (609)
|+.+++.+..+.....+.+++|+|+|++|+++. ..++.|.|||..+++.+..+... ...+.++++|
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 235 DAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTN-GVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred ECCCCcEEEEEEeCCCcceEEECCCCCEEEEEc-CCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 999998887766667899999999999998753 36899999999999999998754 5558888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=9e-22 Score=217.18 Aligned_cols=258 Identities=21% Similarity=0.343 Sum_probs=206.7
Q ss_pred eeeeeecCCCCeEEEEEccCCCE----EEEEeCCCeEEEEeCCC---C---eeEEEecCCCCceEEEEec---CCEEEEE
Q psy4876 327 DHLMDLEGNENVCSVAWIQEGYM----LGVGTSLGTVQLWDVSA---K---KKCRTMDGHDVRVGALAWN---TYILSSG 393 (609)
Q Consensus 327 ~~l~~~~h~~~V~~v~~spdg~~----Lasgs~dg~I~iwd~~~---~---~~~~~l~~h~~~V~~l~~~---~~~L~sg 393 (609)
.....+........++|.+.|.. ||.|..||.|.+||... + ..+.+...|.+.|..+.|| +++|++|
T Consensus 56 k~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG 135 (1049)
T KOG0307|consen 56 KPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASG 135 (1049)
T ss_pred cccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeecc
Confidence 44444545677889999998755 88899999999999865 2 3466778899999999996 6799999
Q ss_pred ecCCeEEEEEcCCCCeeEEE-EccCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcc--cE
Q psy4876 394 SRCGNIVHHDVRSRDHKVAL-LQNHTQEVCGLKWSPD-GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA--AV 469 (609)
Q Consensus 394 s~dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~spd-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~--~V 469 (609)
+.||.|.|||+...+..... -....+.|.+++|+.. ...||+++.+|.+.|||++.. +++..+..+.+ .+
T Consensus 136 a~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~------~pii~ls~~~~~~~~ 209 (1049)
T KOG0307|consen 136 ADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK------KPIIKLSDTPGRMHC 209 (1049)
T ss_pred CCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC------CcccccccCCCccce
Confidence 99999999999876433322 2235678999999984 456899999999999999987 66777766654 47
Q ss_pred EEEEEcCCCCcEEEEEecc-CCCeEEEEECCC-CceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce
Q psy4876 470 KAIAWCPWSPNVLASGGGT-ADRHIYFWNVSS-GACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK 546 (609)
Q Consensus 470 ~~l~~sp~~~~llasggGs-~Dg~I~iwd~~t-~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~ 546 (609)
..|+|+|+...-++++.++ ..-.|.+||++. ...++.+.+| ..|.++.|++.+..++..+| .|+.|.+|+..+++.
T Consensus 210 S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg-kD~~ii~wN~~tgEv 288 (1049)
T KOG0307|consen 210 SVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG-KDNRIICWNPNTGEV 288 (1049)
T ss_pred eeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc-CCCCeeEecCCCceE
Confidence 8899999988777666421 235799999984 4567777655 48999999999865555555 899999999999999
Q ss_pred EEEEeCCCCCEEEEEEeCCCC-EEEEEECCCCEEEEEcCCCccchh
Q psy4876 547 VAELHGHSARVLNLAMSPDET-TVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 547 ~~~l~~h~~~V~~l~~spdg~-~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
+.++.....++..+.|.|... .++.++-||.|-|+.+.+......
T Consensus 289 l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~~~~ 334 (1049)
T KOG0307|consen 289 LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDTDLV 334 (1049)
T ss_pred eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCccch
Confidence 999988889999999999766 778889999999999998774443
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-22 Score=210.57 Aligned_cols=220 Identities=25% Similarity=0.465 Sum_probs=192.1
Q ss_pred eEEEEEecCC--CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHF--NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~--~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
+|+++..-.. -++.|+.|..+-||.+.. ...+..+. |...|.+|.|+++.
T Consensus 30 av~~lk~~~s~r~~~~Gg~~~k~~L~~i~k---------------------------p~~i~S~~~hespIeSl~f~~~E 82 (825)
T KOG0267|consen 30 AVGCLKIRKSSRSLVTGGEDEKVNLWAIGK---------------------------PNAITSLTGHESPIESLTFDTSE 82 (825)
T ss_pred hhceeeeeccceeeccCCCceeeccccccC---------------------------CchhheeeccCCcceeeecCcch
Confidence 4555554222 266688888999998854 33444455 99999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
.+|++|+.+|+|++||++.++.++++.+|...+..+.|+ +.++++|+.|+.+.+||++..+ +...+.+|...|..+.
T Consensus 83 ~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 83 RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-CSHTYKSHTRVVDVLR 161 (825)
T ss_pred hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC-ceeeecCCcceeEEEe
Confidence 999999999999999999999999999999999999997 4677889999999999999764 8889999999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeE
Q psy4876 426 WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLD 505 (609)
Q Consensus 426 ~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~ 505 (609)
|+|+|+++++|++|..++|||+..| +.+..|..|.+.+..+.|+|.. .|++.| +.|+++++||+++-+.+.
T Consensus 162 lsP~Gr~v~~g~ed~tvki~d~~ag------k~~~ef~~~e~~v~sle~hp~e-~Lla~G--s~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 162 LSPDGRWVASGGEDNTVKIWDLTAG------KLSKEFKSHEGKVQSLEFHPLE-VLLAPG--SSDRTVRFWDLETFEVIS 232 (825)
T ss_pred ecCCCceeeccCCcceeeeeccccc------ccccccccccccccccccCchh-hhhccC--CCCceeeeeccceeEEee
Confidence 9999999999999999999999988 7888999999999999999965 677776 499999999999888887
Q ss_pred EEcCC-CCeEEEEEcCCCCeEEE
Q psy4876 506 SIDTK-SQVCALLWNSDYKELVS 527 (609)
Q Consensus 506 ~~~~~-~~v~sl~~s~~g~~l~~ 527 (609)
..... ..|.+..|++++..+++
T Consensus 233 s~~~~~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 233 SGKPETDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred ccCCccCCceeeeecCCceeeec
Confidence 77654 58999999999999887
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=179.52 Aligned_cols=219 Identities=23% Similarity=0.366 Sum_probs=178.0
Q ss_pred CCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCe----------eEE-----EecCCCCceEEEEe---cCCEEEEEe
Q psy4876 334 GNENVCSVAWIQ-EGYMLGVGTSLGTVQLWDVSAKK----------KCR-----TMDGHDVRVGALAW---NTYILSSGS 394 (609)
Q Consensus 334 h~~~V~~v~~sp-dg~~Lasgs~dg~I~iwd~~~~~----------~~~-----~l~~h~~~V~~l~~---~~~~L~sgs 394 (609)
|.+.|.++...+ .|+|+++|+.||.|.|||++... .+. .-.+|.-.|..+.| +..++.+++
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS 121 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS 121 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence 889999999988 57999999999999999997532 111 12368889999999 678999999
Q ss_pred cCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEcc---CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEE
Q psy4876 395 RCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSP---DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKA 471 (609)
Q Consensus 395 ~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp---dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~ 471 (609)
.|.+++|||..+.+ ....++ ..+.|.+-+|+| .--++|+|..|-.|++-|+.+| ...+.+.+|...|.+
T Consensus 122 FDhtlKVWDtnTlQ-~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG------s~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 122 FDHTLKVWDTNTLQ-EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG------SFSHTLSGHRDGVLA 193 (397)
T ss_pred ccceEEEeecccce-eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC------cceeeeccccCceEE
Confidence 99999999999874 444443 567788889998 3457899999999999999999 788999999999999
Q ss_pred EEEcCCCCcEEEEEeccCCCeEEEEECCCC-ceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce---E
Q psy4876 472 IAWCPWSPNVLASGGGTADRHIYFWNVSSG-ACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK---V 547 (609)
Q Consensus 472 l~~sp~~~~llasggGs~Dg~I~iwd~~t~-~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~---~ 547 (609)
+.|+|...++|++|+ .||.|++||++.. .|...++ ...++. +
T Consensus 194 V~Wsp~~e~vLatgs--aDg~irlWDiRrasgcf~~lD--------------------------------~hn~k~~p~~ 239 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGS--ADGAIRLWDIRRASGCFRVLD--------------------------------QHNTKRPPIL 239 (397)
T ss_pred EEeccCceeEEEecC--CCceEEEEEeecccceeEEee--------------------------------cccCccCccc
Confidence 999999999999984 8999999999843 3433333 222221 1
Q ss_pred EEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 548 AELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 548 ~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
..-..|.+.|..++|+.||.++++++.|..+++|+...+....+...
T Consensus 240 ~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g 286 (397)
T KOG4283|consen 240 KTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFG 286 (397)
T ss_pred cccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccc
Confidence 22347999999999999999999999999999999998887655443
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.3e-19 Score=184.95 Aligned_cols=281 Identities=23% Similarity=0.358 Sum_probs=216.4
Q ss_pred EEEEEecCC-CeEEE-EcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCE
Q psy4876 272 LNLIDWSHF-NVLAV-ALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYM 349 (609)
Q Consensus 272 v~~l~wsp~-~lla~-s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~ 349 (609)
|.+|+++.+ +.||+ -.+|.|.||++..+ --.+.+.....+..|.+++|++ |..
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~------------------------w~~~~vi~g~~drsIE~L~W~e-~~R 82 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNN------------------------WFLEPVIHGPEDRSIESLAWAE-GGR 82 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCC------------------------ceeeEEEecCCCCceeeEEEcc-CCe
Confidence 678999876 55664 46899999999871 1223334444788999999994 556
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeE-EEEccCCCCeEEEEE
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKV-ALLQNHTQEVCGLKW 426 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~-~~~~~h~~~V~~l~~ 426 (609)
|.+.+.+|.|.-||+.+++....+....+.|++++.+ +..++.|+.||.+..++...+.-.. ..+...++.|.+++|
T Consensus 83 LFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw 162 (691)
T KOG2048|consen 83 LFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSW 162 (691)
T ss_pred EEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEe
Confidence 7778888999999999999999999999999999995 6899999999977777776653211 223445689999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCCCCCC-ccceEeecC-CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee
Q psy4876 427 SPDGRYLASGGNDNLLNIWSGVPGQHTFS-TQPIHSLSR-HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504 (609)
Q Consensus 427 spdg~~lasgs~Dg~I~iwd~~~~~~~~~-~~~~~~~~~-h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~ 504 (609)
+|++..+++|+.||.|++||...+..... ...+..+.. ...-|.++.|-.++ .+++| ..-|+|.+||...+.++
T Consensus 163 ~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sg--DS~G~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 163 NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASG--DSAGTVTFWDSIFGTLI 238 (691)
T ss_pred cCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEe--cCCceEEEEcccCcchh
Confidence 99999999999999999999998832110 000111111 33457788887654 67776 57899999999999999
Q ss_pred EEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce----EEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEE
Q psy4876 505 DSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK----VAELHGHSARVLNLAMSPDETTVLSAGADETLR 579 (609)
Q Consensus 505 ~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~ 579 (609)
+++..+ ..|.+++..+++..++++ +.|+.|..|...+... ......|...|.+++..++ .|++||.|.++.
T Consensus 239 qS~~~h~adVl~Lav~~~~d~vfsa--Gvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~ 314 (691)
T KOG2048|consen 239 QSHSCHDADVLALAVADNEDRVFSA--GVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLA 314 (691)
T ss_pred hhhhhhhcceeEEEEcCCCCeEEEc--cCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEE
Confidence 998755 689999999999999985 3799998888765533 2233568888999999877 899999999998
Q ss_pred EEEcCC
Q psy4876 580 LWKIFE 585 (609)
Q Consensus 580 iWdl~~ 585 (609)
+-....
T Consensus 315 i~~s~~ 320 (691)
T KOG2048|consen 315 ICSSRE 320 (691)
T ss_pred Eccccc
Confidence 876655
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=190.73 Aligned_cols=239 Identities=15% Similarity=0.237 Sum_probs=202.1
Q ss_pred CccCCceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEE
Q psy4876 264 PEIQNDYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCS 340 (609)
Q Consensus 264 p~~~~~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~ 340 (609)
+.+..+-|+.++...||+ +|++|...+|.|||+.. .....-.++. ..-.+.+
T Consensus 460 dcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAa-------------------------pTprikaeltssapaCyA 514 (705)
T KOG0639|consen 460 DCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAA-------------------------PTPRIKAELTSSAPACYA 514 (705)
T ss_pred cccCcccceeeeEecCCCceEEeccccceeeeeeccC-------------------------CCcchhhhcCCcchhhhh
Confidence 345557889999999996 88899999999999987 3333333443 3456788
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCC
Q psy4876 341 VAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHT 418 (609)
Q Consensus 341 v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 418 (609)
++.+||.+..++++.||.|.|||+.+...++.|++|...+.||.. +|..|.+|+-|.+|+.||++++.+. .. ....
T Consensus 515 La~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql-qq-hdF~ 592 (705)
T KOG0639|consen 515 LAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL-QQ-HDFS 592 (705)
T ss_pred hhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh-hh-hhhh
Confidence 999999999999999999999999999999999999999999999 5999999999999999999987422 22 2346
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEEC
Q psy4876 419 QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 419 ~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~ 498 (609)
+.|.++..+|.+.+|++|-..+.|.|...... ..+.+..|...|.++.|.+.|++++.+| .|..+..|.+
T Consensus 593 SQIfSLg~cP~~dWlavGMens~vevlh~skp-------~kyqlhlheScVLSlKFa~cGkwfvStG---kDnlLnawrt 662 (705)
T KOG0639|consen 593 SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-------EKYQLHLHESCVLSLKFAYCGKWFVSTG---KDNLLNAWRT 662 (705)
T ss_pred hhheecccCCCccceeeecccCcEEEEecCCc-------cceeecccccEEEEEEecccCceeeecC---chhhhhhccC
Confidence 78999999999999999999999988876643 4566777999999999999998777776 8999999999
Q ss_pred CCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 499 SSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 499 ~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
.-|..+......+.|.++..+.+.+++++++ .|....||.+
T Consensus 663 PyGasiFqskE~SsVlsCDIS~ddkyIVTGS--GdkkATVYeV 703 (705)
T KOG0639|consen 663 PYGASIFQSKESSSVLSCDISFDDKYIVTGS--GDKKATVYEV 703 (705)
T ss_pred ccccceeeccccCcceeeeeccCceEEEecC--CCcceEEEEE
Confidence 9999998888889999999999999999955 5766666653
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=175.18 Aligned_cols=225 Identities=22% Similarity=0.321 Sum_probs=186.2
Q ss_pred EEEEeCCCeEEEEeCCCC------------eeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccC
Q psy4876 350 LGVGTSLGTVQLWDVSAK------------KKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNH 417 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~------------~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h 417 (609)
|++|+....|.-+++.-. ..+..+..|.+.|++++.++.++++|+.|-+|+|||++.. .....+-.|
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~-~qlg~ll~H 82 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKR-KQLGILLSH 82 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccch-hhhcceecc
Confidence 566777666666655321 2245667899999999999999999999999999999987 467778889
Q ss_pred CCCeEEEEEccCCC--EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEE
Q psy4876 418 TQEVCGLKWSPDGR--YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYF 495 (609)
Q Consensus 418 ~~~V~~l~~spdg~--~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~i 495 (609)
.+.|+++.|.+.-. +|++|+.||.|.+|+...- ..+..+.+|.+.|+.++.+|.++.-|.+| .|+.++.
T Consensus 83 agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W------~~~~slK~H~~~Vt~lsiHPS~KLALsVg---~D~~lr~ 153 (362)
T KOG0294|consen 83 AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW------ELLKSLKAHKGQVTDLSIHPSGKLALSVG---GDQVLRT 153 (362)
T ss_pred ccceEEEEecCCcchhheeeecCCCcEEEEEcCCe------EEeeeecccccccceeEecCCCceEEEEc---CCceeee
Confidence 99999999999665 8999999999999999876 88999999999999999999987556665 5999999
Q ss_pred EECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECC
Q psy4876 496 WNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGAD 575 (609)
Q Consensus 496 wd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D 575 (609)
||+-.|+.-..+........+.|+|.|.++++.. .+.|-||.+.+-....++.. ..++.++.|. ++..|++|+.|
T Consensus 154 WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~---~~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~ 228 (362)
T KOG0294|consen 154 WNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG---RNKIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDN 228 (362)
T ss_pred ehhhcCccceeeccCCcceeeEEcCCCCEEEEEe---ccEEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCC
Confidence 9999998877777777777799999999888753 78999999987766655532 3567777775 66789999999
Q ss_pred CCEEEEEcCCCccc
Q psy4876 576 ETLRLWKIFEKVKS 589 (609)
Q Consensus 576 g~I~iWdl~~~~~~ 589 (609)
+.|++||.....+.
T Consensus 229 ~~i~~~D~ds~~~~ 242 (362)
T KOG0294|consen 229 EWISLKDTDSDTPL 242 (362)
T ss_pred ceEEEeccCCCccc
Confidence 99999999875544
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-20 Score=186.81 Aligned_cols=222 Identities=20% Similarity=0.304 Sum_probs=187.1
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCC-----
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRS----- 406 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~----- 406 (609)
-.+.|.+++-+|+|.+|+.|+..|.|++|.+.+|.++..+.+|-..|+|+.| |+.+|++|+.||.|.+|++..
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 5688999999999999999989999999999999999999999999999999 689999999999999998742
Q ss_pred ---CCeeEEEEccCCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcE
Q psy4876 407 ---RDHKVALLQNHTQEVCGLKWSPD--GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 407 ---~~~~~~~~~~h~~~V~~l~~spd--g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 481 (609)
...+...+..|+-+|+.+...+. ..+|++++.|.++++||+..+ ..+.++. ....+.+++.+|-+ ..
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g------~LLlti~-fp~si~av~lDpae-~~ 231 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG------VLLLTIT-FPSSIKAVALDPAE-RV 231 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc------eeeEEEe-cCCcceeEEEcccc-cE
Confidence 12467788899999999998774 357999999999999999988 5666664 46679999999976 45
Q ss_pred EEEEeccCCCeEEEEECCCCc----------------eeEEEcCC---CCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q psy4876 482 LASGGGTADRHIYFWNVSSGA----------------CLDSIDTK---SQVCALLWNSDYKELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t~~----------------~~~~~~~~---~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~ 542 (609)
+.+| +.+|.|.+.++.... .+..+.++ +.|++++++-||..|++ |..||+|+|||+.
T Consensus 232 ~yiG--t~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS--Gd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 232 VYIG--TEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS--GDEDGKVCVWDIY 307 (476)
T ss_pred EEec--CCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe--eCCCCCEEEEecc
Confidence 5555 599999998875322 22333333 38999999999999999 7799999999999
Q ss_pred CCceEEEEeCCCCCEEEEEEeCCCC
Q psy4876 543 SLVKVAELHGHSARVLNLAMSPDET 567 (609)
Q Consensus 543 ~~~~~~~l~~h~~~V~~l~~spdg~ 567 (609)
+.++++++..-.++|+.+.+.|-.+
T Consensus 308 S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 308 SKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred hHHHHHHHhhhccccceeEeecccc
Confidence 9999988876678899999866443
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-18 Score=176.45 Aligned_cols=288 Identities=16% Similarity=0.219 Sum_probs=215.9
Q ss_pred eeEEEEEecCCC---eEEE---EcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEE
Q psy4876 270 YYLNLIDWSHFN---VLAV---ALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVA 342 (609)
Q Consensus 270 ~~v~~l~wsp~~---lla~---s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~ 342 (609)
--|.+++||+-+ ++++ +.+..+.+||++.+ . .+.+.. .++.|....
T Consensus 155 ~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~-------------------------~--~~~~vk~sne~v~~a~ 207 (626)
T KOG2106|consen 155 RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKK-------------------------A--KLGPVKTSNEVVFLAT 207 (626)
T ss_pred ccceeeeecccCCCceEEEecCCCccccchhhchhh-------------------------h--ccCcceeccceEEEEE
Confidence 348999999852 4443 33457889999762 1 222333 467799999
Q ss_pred EccCCCEEEEEeCCCeEEEEeCCCCeeEE---EecCC-CCceEEEEec-CCEEEEEecCCeEEEEEcCCCCeeEEEEccC
Q psy4876 343 WIQEGYMLGVGTSLGTVQLWDVSAKKKCR---TMDGH-DVRVGALAWN-TYILSSGSRCGNIVHHDVRSRDHKVALLQNH 417 (609)
Q Consensus 343 ~spdg~~Lasgs~dg~I~iwd~~~~~~~~---~l~~h-~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h 417 (609)
|+|.+..|++....|.+..|+.+.+.+.+ .+..+ ..-|.|++|. +.-+++|..+|.|.||+..+.. ..+....|
T Consensus 208 FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~-~~k~~~aH 286 (626)
T KOG2106|consen 208 FHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNR-ISKQVHAH 286 (626)
T ss_pred eccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCce-EEeEeeec
Confidence 99988655555666999999999876544 34433 3679999993 4566799999999999998764 44444599
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC-----CC-----------------------------CccceEeec
Q psy4876 418 TQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQH-----TF-----------------------------STQPIHSLS 463 (609)
Q Consensus 418 ~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~-----~~-----------------------------~~~~~~~~~ 463 (609)
.+.|.+++...+|.+| +|+.|..|..||-.-... .. .........
T Consensus 287 ~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~ 365 (626)
T KOG2106|consen 287 DGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ 365 (626)
T ss_pred CCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEE
Confidence 9999999999999755 599999999999321110 00 001112234
Q ss_pred CCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q psy4876 464 RHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS 543 (609)
Q Consensus 464 ~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~ 543 (609)
+|......++.+|+...++ +++ .|+.+++|+ ..+++.+.....++.++.|+|.| .+++ |+..|...+.|.++
T Consensus 366 gh~delwgla~hps~~q~~-T~g--qdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~--Gt~~G~w~V~d~e~ 437 (626)
T KOG2106|consen 366 GHGDELWGLATHPSKNQLL-TCG--QDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAV--GTATGRWFVLDTET 437 (626)
T ss_pred ecccceeeEEcCCChhhee-ecc--CcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEE--eeccceEEEEeccc
Confidence 6777888999999875555 443 899999999 66777777788899999999999 6666 77899999999998
Q ss_pred CceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhhh
Q psy4876 544 LVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEIK 595 (609)
Q Consensus 544 ~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~~ 595 (609)
...+. ++...+++.+++|+|+|.+||.|+.|+.|+||.+.......++..+
T Consensus 438 ~~lv~-~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k 488 (626)
T KOG2106|consen 438 QDLVT-IHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK 488 (626)
T ss_pred ceeEE-EEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee
Confidence 55444 4444889999999999999999999999999999987766555443
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.5e-20 Score=179.96 Aligned_cols=195 Identities=24% Similarity=0.438 Sum_probs=159.5
Q ss_pred CCEEEEEecCCeEEEEEcCC---------------CCeeEEEEccCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCC
Q psy4876 387 TYILSSGSRCGNIVHHDVRS---------------RDHKVALLQNHTQEVCGLKWSPD-GRYLASGGNDNLLNIWSGVPG 450 (609)
Q Consensus 387 ~~~L~sgs~dg~I~iwd~~~---------------~~~~~~~~~~h~~~V~~l~~spd-g~~lasgs~Dg~I~iwd~~~~ 450 (609)
..+.++-+..|.|.||++.. ...++.++.+|..+=.+|+|||- ...|++|..-+.|++|...++
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g 244 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG 244 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccC
Confidence 45556666778888888752 12467888899999999999992 224888888889999999887
Q ss_pred CCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC---ceeEEEcCCCCeEEEEEcCCCCeEEE
Q psy4876 451 QHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG---ACLDSIDTKSQVCALLWNSDYKELVS 527 (609)
Q Consensus 451 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~---~~~~~~~~~~~v~sl~~s~~g~~l~~ 527 (609)
.-.. -...+.+|...|..|+|+|....+|++|+ .|+.|+|||++.+ .++..-.+.+.|..|.|+....+|++
T Consensus 245 ~W~v---d~~Pf~gH~~SVEDLqWSptE~~vfaScS--~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLas 319 (440)
T KOG0302|consen 245 SWKV---DQRPFTGHTKSVEDLQWSPTEDGVFASCS--CDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLAS 319 (440)
T ss_pred ceee---cCccccccccchhhhccCCccCceEEeee--cCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeee
Confidence 4322 22345679999999999999999999985 8999999999988 56666566789999999999997776
Q ss_pred EEecCCCeEEEEECCC---CceEEEEeCCCCCEEEEEEeCC-CCEEEEEECCCCEEEEEcCCCcc
Q psy4876 528 AHGFAQNQLIIWKYPS---LVKVAELHGHSARVLNLAMSPD-ETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 528 ~sG~~dg~I~Iwd~~~---~~~~~~l~~h~~~V~~l~~spd-g~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
|.+||++.|||++. +.++..++-|..+|++|.|+|. ...|+++|.|..|.|||+.-...
T Consensus 320 --G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 320 --GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred --cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 77999999999874 5788999999999999999995 45788889999999999976543
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-20 Score=209.02 Aligned_cols=250 Identities=23% Similarity=0.446 Sum_probs=198.6
Q ss_pred cCCceeEEEEEecCC-----CeEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCe
Q psy4876 266 IQNDYYLNLIDWSHF-----NVLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENV 338 (609)
Q Consensus 266 ~~~~~~v~~l~wsp~-----~lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V 338 (609)
+..+...+.|+|++. |+|| |..||.|.+||...- ..+.....+.+.. |.+.|
T Consensus 61 ~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~---------------------~~~~~~~~la~~~~h~G~V 119 (1049)
T KOG0307|consen 61 LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI---------------------IANASEEVLATKSKHTGPV 119 (1049)
T ss_pred ccccccceeeeecccCCCccceeeccccCCceEEecchhh---------------------ccCcchHHHhhhcccCCce
Confidence 334555788999874 4677 455899999998761 0114455666666 99999
Q ss_pred EEEEEccCC-CEEEEEeCCCeEEEEeCCCCeeEEEec--CCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 339 CSVAWIQEG-YMLGVGTSLGTVQLWDVSAKKKCRTMD--GHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 339 ~~v~~spdg-~~Lasgs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
..+.|++.+ +.||+|+.||.|.|||+..-+.-..+. .....|.+++|| .++|++++.+|.+.|||++... .+.
T Consensus 120 ~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii 198 (1049)
T KOG0307|consen 120 LGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-PII 198 (1049)
T ss_pred eeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC-ccc
Confidence 999999976 699999999999999998754433332 245789999996 5899999999999999999874 555
Q ss_pred EEccCCC--CeEEEEEccCCC-EEEEEeCCC---cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 413 LLQNHTQ--EVCGLKWSPDGR-YLASGGNDN---LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 413 ~~~~h~~--~V~~l~~spdg~-~lasgs~Dg---~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
.+..|.. .+..|+|+|+.. .|+++++|. .|.+||++... .+++.+++|+..|.++.||+.+..+++++|
T Consensus 199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-----sP~k~~~~H~~GilslsWc~~D~~lllSsg 273 (1049)
T KOG0307|consen 199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-----SPLKILEGHQRGILSLSWCPQDPRLLLSSG 273 (1049)
T ss_pred ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-----CchhhhcccccceeeeccCCCCchhhhccc
Confidence 5554443 578899999754 566666654 69999999764 688889999999999999999988888886
Q ss_pred ccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc
Q psy4876 487 GTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV 545 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~ 545 (609)
.|+.|.+||.++++.+..+... ..+..+.|+|...-++++. +-||.|.||.+....
T Consensus 274 --kD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~a-sfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 274 --KDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAA-SFDGKISIYSLQGTD 330 (1049)
T ss_pred --CCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhh-eeccceeeeeeecCC
Confidence 8999999999999999999875 4899999999998665553 479999999986543
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=182.52 Aligned_cols=205 Identities=19% Similarity=0.351 Sum_probs=170.0
Q ss_pred CCCCeEEEEEccCC-CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCe
Q psy4876 334 GNENVCSVAWIQEG-YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDH 409 (609)
Q Consensus 334 h~~~V~~v~~spdg-~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~ 409 (609)
|.+.|.+++|+.+- +.||+|+.|.+|++||+.++++..++..|...|.++.|+ +.+|++|+.|++|.+.|++....
T Consensus 242 HTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~ 321 (463)
T KOG0270|consen 242 HTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN 321 (463)
T ss_pred chHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc
Confidence 88889999998875 789999999999999999999999999999999999995 68999999999999999996432
Q ss_pred eEEEEccCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEecc
Q psy4876 410 KVALLQNHTQEVCGLKWSPD-GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGT 488 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spd-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs 488 (609)
.-..+ ...+.|-.++|.|. ...++++..||+|+-+|++... +++.++..|.+.|.+|++++.-+.++++++
T Consensus 322 s~~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-----~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s-- 393 (463)
T KOG0270|consen 322 SGKEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-----KPVWTLKAHDDEISGLSVNIQTPGLLSTAS-- 393 (463)
T ss_pred cCceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCC-----CceeEEEeccCCcceEEecCCCCcceeecc--
Confidence 22222 24578999999994 4568888899999999999874 799999999999999999999999999974
Q ss_pred CCCeEEEEECCCCce--eEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE
Q psy4876 489 ADRHIYFWNVSSGAC--LDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKV 547 (609)
Q Consensus 489 ~Dg~I~iwd~~t~~~--~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~ 547 (609)
.|+.|++|++..... +..-.. -+...|.++.|+-..+++.+| ..+.++|||+.+...+
T Consensus 394 ~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG-~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 394 TDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGG-EKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecC-ccceEEEeecccChhH
Confidence 899999999974433 222221 135778888998888877754 6779999998776543
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-19 Score=186.09 Aligned_cols=297 Identities=19% Similarity=0.313 Sum_probs=232.4
Q ss_pred ccCCceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec----CCCCe
Q psy4876 265 EIQNDYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE----GNENV 338 (609)
Q Consensus 265 ~~~~~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----h~~~V 338 (609)
-+..+.+|+++.|+|.+ +|+++.|.++.||...... |-......+. ..+..
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~t-----------------------GiWv~~vRlGe~gg~a~GF 319 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENT-----------------------GIWVDVVRLGEVGGSAGGF 319 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCcc-----------------------ceEEEEEEeecccccccce
Confidence 34556679999999996 9999999999999887611 2333333333 24568
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeCCCC---eeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCC---ee
Q psy4876 339 CSVAWIQEGYMLGVGTSLGTVQLWDVSAK---KKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRD---HK 410 (609)
Q Consensus 339 ~~v~~spdg~~Lasgs~dg~I~iwd~~~~---~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~---~~ 410 (609)
.+.-|+|+++.+++-+..|-.++|..... .....+.||...|..++|+ |.+|++.+.|-+-+++---..+ +.
T Consensus 320 ~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHE 399 (764)
T KOG1063|consen 320 WGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHE 399 (764)
T ss_pred eeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceee
Confidence 89999999999999999999999984332 3445567999999999996 8999999999999988654222 44
Q ss_pred EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC---------------C-----------------CCC----
Q psy4876 411 VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPG---------------Q-----------------HTF---- 454 (609)
Q Consensus 411 ~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~---------------~-----------------~~~---- 454 (609)
+..-+-|...+.|++|-+..-.|++|.+...+++|+.... . ...
T Consensus 400 iaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~ 479 (764)
T KOG1063|consen 400 IARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGET 479 (764)
T ss_pred ecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccc
Confidence 5556678999999999987678999999999999975310 0 000
Q ss_pred ----------------------------------CccceEeecCCcccEEEEEEcCCCCcEEEEEeccC---CCeEEEEE
Q psy4876 455 ----------------------------------STQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA---DRHIYFWN 497 (609)
Q Consensus 455 ----------------------------------~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~---Dg~I~iwd 497 (609)
....++++-+|.-.|.+++.+|++ +++|++.-+. ...|++|+
T Consensus 480 ~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~ 558 (764)
T KOG1063|consen 480 NTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWN 558 (764)
T ss_pred ccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEe
Confidence 011234556899999999999988 6777764222 34699999
Q ss_pred CCCCceeEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc----eEEEEeCCCCCEEEEEEeCCCCEEEEE
Q psy4876 498 VSSGACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV----KVAELHGHSARVLNLAMSPDETTVLSA 572 (609)
Q Consensus 498 ~~t~~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~----~~~~l~~h~~~V~~l~~spdg~~L~s~ 572 (609)
..+...++.+..|+ .|+.++|+|||++|++++ .|.++.+|...... ....++.|..-|+++.|+|++.+++|+
T Consensus 559 t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvs--RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTa 636 (764)
T KOG1063|consen 559 TANWLQVQELEGHSLTVTRLAFSPDGRYLLSVS--RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATA 636 (764)
T ss_pred ccchhhhheecccceEEEEEEECCCCcEEEEee--cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEe
Confidence 99999888888877 899999999999999976 89999999874332 233467899999999999999999999
Q ss_pred ECCCCEEEEEcCCCc
Q psy4876 573 GADETLRLWKIFEKV 587 (609)
Q Consensus 573 s~Dg~I~iWdl~~~~ 587 (609)
|.|.+|+||......
T Consensus 637 SRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 637 SRDKKVKVWEEPDLR 651 (764)
T ss_pred cCCceEEEEeccCch
Confidence 999999999998873
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-18 Score=182.60 Aligned_cols=244 Identities=24% Similarity=0.386 Sum_probs=202.3
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC-eeEEEecCC-CCceEEEEec-CCEEEEEecCCeEEEEEcCCCCee
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAK-KKCRTMDGH-DVRVGALAWN-TYILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~-~~~~~l~~h-~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
....|.+|||+.+.+.||++-.+|.|.||++..+ -+...+.++ ...|.+++|. +..|++.+.+|.|.-||+.+. ..
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l-k~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL-KQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccC-ce
Confidence 5688999999999999999999999999999875 334455554 4679999995 889999999999999999997 46
Q ss_pred EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCC
Q psy4876 411 VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD 490 (609)
Q Consensus 411 ~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~D 490 (609)
...+....+.|.+++.+|.+..++.|+.||.++.++...+.. +....+....+.|.+++|+|++. -++.| +.|
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I----~~~r~l~rq~sRvLslsw~~~~~-~i~~G--s~D 175 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI----TYKRSLMRQKSRVLSLSWNPTGT-KIAGG--SID 175 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE----EEEeecccccceEEEEEecCCcc-EEEec--ccC
Confidence 777788889999999999999999999999888888776632 22233444568999999999884 34554 699
Q ss_pred CeEEEEECCCCceeEEEcC---------CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEE
Q psy4876 491 RHIYFWNVSSGACLDSIDT---------KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLA 561 (609)
Q Consensus 491 g~I~iwd~~t~~~~~~~~~---------~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~ 561 (609)
|.|++||..++..+..+.. ..-|+++.|-.++. +++ |...|.|.+||...+..+..+..|.+.|.+++
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~s--gDS~G~V~FWd~~~gTLiqS~~~h~adVl~La 252 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IAS--GDSAGTVTFWDSIFGTLIQSHSCHDADVLALA 252 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEE--ecCCceEEEEcccCcchhhhhhhhhcceeEEE
Confidence 9999999999987773321 12477888886654 444 77899999999999999999999999999999
Q ss_pred EeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 562 MSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 562 ~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
..+++.+|+++|.|+.|.-+...+...
T Consensus 253 v~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 253 VADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EcCCCCeEEEccCCCceEEEEecCCcc
Confidence 999999999999999999998887654
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-19 Score=176.19 Aligned_cols=240 Identities=23% Similarity=0.399 Sum_probs=184.5
Q ss_pred cCCCCeEEEEEccCC--CEEEEEeCCCeEEEEeCCC----------------CeeEEEecCCCCceEEEEecC---CEEE
Q psy4876 333 EGNENVCSVAWIQEG--YMLGVGTSLGTVQLWDVSA----------------KKKCRTMDGHDVRVGALAWNT---YILS 391 (609)
Q Consensus 333 ~h~~~V~~v~~spdg--~~Lasgs~dg~I~iwd~~~----------------~~~~~~l~~h~~~V~~l~~~~---~~L~ 391 (609)
.|.+.+.-+.-++-+ .+.|+-+..|.|+||++.. .+.+.++.+|...=..|+|++ ..|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 377777777777654 5666667889999999852 245778889999999999965 4578
Q ss_pred EEecCCeEEEEEcCCCCee--EEEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCccc
Q psy4876 392 SGSRCGNIVHHDVRSRDHK--VALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAA 468 (609)
Q Consensus 392 sgs~dg~I~iwd~~~~~~~--~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 468 (609)
+|..-+.|++|...++.-. ...+.+|+..|-.|+||| ....||+|+-||+|+|||++.+.. +.......|.+.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~----~~~~~~kAh~sD 304 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK----KAAVSTKAHNSD 304 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc----cceeEeeccCCc
Confidence 8888899999998876432 245668999999999999 456899999999999999998732 333444789999
Q ss_pred EEEEEEcCCCCcEEEEEeccCCCeEEEEECCC---CceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q psy4876 469 VKAIAWCPWSPNVLASGGGTADRHIYFWNVSS---GACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL 544 (609)
Q Consensus 469 V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t---~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~ 544 (609)
|+.|.|+..-. +|++|+ .||+++|||++. ++++..++.| .+|+++.|+|....++.++| .|++|.|||+...
T Consensus 305 VNVISWnr~~~-lLasG~--DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg-~D~QitiWDlsvE 380 (440)
T KOG0302|consen 305 VNVISWNRREP-LLASGG--DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG-EDNQITIWDLSVE 380 (440)
T ss_pred eeeEEccCCcc-eeeecC--CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc-CCCcEEEEEeecc
Confidence 99999998876 888875 999999999984 5677888755 69999999998877777655 8999999998421
Q ss_pred ce----------------EEEEeCC--CCCEEEEEEeCCC-CEEEEEECCCCEEEE
Q psy4876 545 VK----------------VAELHGH--SARVLNLAMSPDE-TTVLSAGADETLRLW 581 (609)
Q Consensus 545 ~~----------------~~~l~~h--~~~V~~l~~spdg-~~L~s~s~Dg~I~iW 581 (609)
.- ..-+--| +..|..+.|++.- .+|++.+.||. .||
T Consensus 381 ~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 381 ADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVF 435 (440)
T ss_pred CChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEE
Confidence 10 0111124 3468889999864 47888888874 444
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-19 Score=171.20 Aligned_cols=281 Identities=18% Similarity=0.284 Sum_probs=209.0
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEc----
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWI---- 344 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~s---- 344 (609)
++..+.||||| +|+-+.|..+.+|++....-. ...... ..-.......+...+.|...+|-
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys------------~~~~~~-~~~~~~~~~r~~eg~tvydy~wYs~M~ 117 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYS------------KKADGP-LNFSKHLSYRYQEGETVYDYCWYSRMK 117 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcc------------cCCCCc-cccccceeEEeccCCEEEEEEeeeccc
Confidence 46678999998 899999999999998652000 000000 00111222333366788888886
Q ss_pred ---cCCCEEEEEeCCCeEEEEeCCCCeeEEEecC--CCC---ceEEEEe--cCCEEEEEecCCeEEEEEc-CCCC-eeEE
Q psy4876 345 ---QEGYMLGVGTSLGTVQLWDVSAKKKCRTMDG--HDV---RVGALAW--NTYILSSGSRCGNIVHHDV-RSRD-HKVA 412 (609)
Q Consensus 345 ---pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~--h~~---~V~~l~~--~~~~L~sgs~dg~I~iwd~-~~~~-~~~~ 412 (609)
|+..++|+.+.+.-|++||.-+|+....+.+ |.. ...+++| +|..|++|.. ..|+++|+ +.+. ..+.
T Consensus 118 s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 118 SDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred cCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcch
Confidence 5678999999999999999999998887764 333 3457888 6888887754 68999999 4332 1122
Q ss_pred EE-----ccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 413 LL-----QNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 413 ~~-----~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
.. .+..+-|.+++|+| +...+|+|+....+-||.-..+ .++..+.+|.+.|+.++|+++|..++. |.
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~------~pl~llggh~gGvThL~~~edGn~lfs-Ga 269 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR------RPLQLLGGHGGGVTHLQWCEDGNKLFS-GA 269 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC------CceeeecccCCCeeeEEeccCcCeecc-cc
Confidence 21 23367899999999 5669999999999989887777 788999999999999999999975554 43
Q ss_pred ccCCCeEEEEECCC-CceeEEEcCCC----CeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceEEEEeCCCCCEEEE
Q psy4876 487 GTADRHIYFWNVSS-GACLDSIDTKS----QVCALLWNSDYKELVSAHGFAQNQLIIWKYPS-LVKVAELHGHSARVLNL 560 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t-~~~~~~~~~~~----~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~-~~~~~~l~~h~~~V~~l 560 (609)
-.|..|..||++. +.++..+..+. +-.-....|+++.|++ |..+|.|++||+.. +..+..+..|...|+.+
T Consensus 270 -Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~Las--G~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgv 346 (406)
T KOG2919|consen 270 -RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILAS--GDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGV 346 (406)
T ss_pred -cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeec--cCCCccEEEEecCCCCCcccccccccccccce
Confidence 4789999999984 44555554331 2333455688899888 77999999999988 66677888899999999
Q ss_pred EEeCCCCEEEEEECC
Q psy4876 561 AMSPDETTVLSAGAD 575 (609)
Q Consensus 561 ~~spdg~~L~s~s~D 575 (609)
+++|--.++++++..
T Consensus 347 slnP~mpilatssGq 361 (406)
T KOG2919|consen 347 SLNPIMPILATSSGQ 361 (406)
T ss_pred ecCcccceeeeccCc
Confidence 999998888888764
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-19 Score=180.17 Aligned_cols=244 Identities=13% Similarity=0.244 Sum_probs=198.8
Q ss_pred ceeEEEEEecCCC---eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec--CCCCeEEEEE
Q psy4876 269 DYYLNLIDWSHFN---VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE--GNENVCSVAW 343 (609)
Q Consensus 269 ~~~v~~l~wsp~~---lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--h~~~V~~v~~ 343 (609)
.+.|.+..|.|+| +++++....+|.||+.+ .++.++..+. ....+.....
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~-------------------------ak~~k~~~~~g~e~~~~e~FeV 311 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET-------------------------AKVTKLKPPYGVEEKSMERFEV 311 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeeccc-------------------------cccccccCCCCcccchhheeEe
Confidence 4457888999986 56677788999999998 6666665554 3456778899
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCC-CC
Q psy4876 344 IQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHT-QE 420 (609)
Q Consensus 344 spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~-~~ 420 (609)
++++++||+.+..|.|.|....+++.+..++ -.+.|..++| ++..|++++.+|.|.+||+++. .++..+.... -.
T Consensus 312 Shd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~~~rf~D~G~v~ 389 (514)
T KOG2055|consen 312 SHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN-SCLHRFVDDGSVH 389 (514)
T ss_pred cCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCc-ceEEEEeecCccc
Confidence 9999999999999999999999999998887 6788999999 6788999999999999999987 4666655322 22
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
-++++.+++|.|||+|+..|.|.|||..+.......+|+..+..-...|++|+|+++.. +||.++.-.+..+++-.+.+
T Consensus 390 gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 390 GTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred eeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccc
Confidence 35677789999999999999999999776544455588888888888999999999985 66555445788999999887
Q ss_pred CceeEEEcCC----CCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q psy4876 501 GACLDSIDTK----SQVCALLWNSDYKELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 501 ~~~~~~~~~~----~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~ 542 (609)
......+... +.|++++|+|.+.++++ |..+|.|.+|.+.
T Consensus 469 ~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAv--GNe~grv~l~kL~ 512 (514)
T KOG2055|consen 469 CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAV--GNEAGRVHLFKLH 512 (514)
T ss_pred eeeeccCCCCCCcccceEEEEecCCCceEEe--ecCCCceeeEeec
Confidence 7666555433 47999999999999999 7799999999864
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-19 Score=180.10 Aligned_cols=270 Identities=14% Similarity=0.210 Sum_probs=205.8
Q ss_pred CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEE--eCCCe
Q psy4876 281 NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVG--TSLGT 358 (609)
Q Consensus 281 ~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasg--s~dg~ 358 (609)
++.+++.+..++|||+.... +....+. ....-.+.++.|..... |+++ +.|..
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~-----------------------~~~~~~~-~t~~pg~~s~~w~~~n~-lvvas~~gdk~ 58 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLE-----------------------TKSEYVH-QTAEPGDFSFNWQRRNF-LVVASMAGDKV 58 (673)
T ss_pred ceeeeccCCceEEeeccccc-----------------------Ccccccc-CCCCCcceeeeccccce-EEEeecCCcee
Confidence 47788888999999998721 1111111 11233489999987664 4444 45678
Q ss_pred EEEEeCCCC--e--eEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCE
Q psy4876 359 VQLWDVSAK--K--KCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRY 432 (609)
Q Consensus 359 I~iwd~~~~--~--~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (609)
|++|.-... + .++...+. .-.|++. -..++++|+..+.|+|||++.. .+.+.+.+|.+.|+++.++-...|
T Consensus 59 ~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-l~hr~lkdh~stvt~v~YN~~Dey 135 (673)
T KOG4378|consen 59 MRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAK-LIHRFLKDHQSTVTYVDYNNTDEY 135 (673)
T ss_pred EEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHH-HHhhhccCCcceeEEEEecCCcce
Confidence 899975432 1 22233333 2233333 2478999999999999999954 577788999999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCccceEeecCC-cccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc--C
Q psy4876 433 LASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH-QAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID--T 509 (609)
Q Consensus 433 lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~--~ 509 (609)
||+++..|.|.|..+.++ .....+... ...|.-+.|+|..+.+|.+++ .+|.|.+||+....++..+. +
T Consensus 136 iAsvs~gGdiiih~~~t~------~~tt~f~~~sgqsvRll~ys~skr~lL~~as--d~G~VtlwDv~g~sp~~~~~~~H 207 (673)
T KOG4378|consen 136 IASVSDGGDIIIHGTKTK------QKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS--DKGAVTLWDVQGMSPIFHASEAH 207 (673)
T ss_pred eEEeccCCcEEEEecccC------ccccceecCCCCeEEEeecccccceeeEeec--cCCeEEEEeccCCCcccchhhhc
Confidence 999999999999999987 344445433 345668999999999998884 89999999999877776653 3
Q ss_pred CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 510 KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 510 ~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
..+...|+|+|....|++..| .|..|.+||.........+. ...+...++|+++|.+|+.|...|.|..||+...+.
T Consensus 208 sAP~~gicfspsne~l~vsVG-~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSVG-YDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred cCCcCcceecCCccceEEEec-ccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 458899999999988888766 79999999998777666664 456889999999999999999999999999987554
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.2e-19 Score=182.76 Aligned_cols=274 Identities=17% Similarity=0.305 Sum_probs=209.9
Q ss_pred eEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCC
Q psy4876 271 YLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGY 348 (609)
Q Consensus 271 ~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~ 348 (609)
.|+.++|-||| -+..+.+..++|||... |. .+.++. |.+.|.||+|+.||+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~nd-------------------------G~--llqtLKgHKDtVycVAys~dGk 66 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSD-------------------------GT--LLQPLKGHKDTVYCVAYAKDGK 66 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCC-------------------------cc--cccccccccceEEEEEEccCCc
Confidence 67889999998 66677888999999987 44 455666 999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecC--CEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEE
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT--YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKW 426 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~--~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 426 (609)
.+|+|+.|..|.||.-.-...+ .+ .|...|.|+.||+ +.|++++- ...-+|...... +... .....|++++|
T Consensus 67 rFASG~aDK~VI~W~~klEG~L-kY-SH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~--V~K~-kss~R~~~CsW 140 (1081)
T KOG1538|consen 67 RFASGSADKSVIIWTSKLEGIL-KY-SHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKS--VSKH-KSSSRIICCSW 140 (1081)
T ss_pred eeccCCCceeEEEeccccccee-ee-ccCCeeeEeecCchHHHhhhcch-hhccccChhhhh--HHhh-hhheeEEEeee
Confidence 9999999999999986432222 12 4999999999985 67777765 346678766532 2222 23467899999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCC----cEEEEEeccCCCeEEEEECCCCc
Q psy4876 427 SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSP----NVLASGGGTADRHIYFWNVSSGA 502 (609)
Q Consensus 427 spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~----~llasggGs~Dg~I~iwd~~t~~ 502 (609)
..||++|+.|-.+|+|.|-+..... ...+..-.+...+|.+++|+|... .++++. ....++.+|.+. |+
T Consensus 141 tnDGqylalG~~nGTIsiRNk~gEe----k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~--DW~qTLSFy~Ls-G~ 213 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKNGEE----KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA--DWGQTLSFYQLS-GK 213 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCCCCc----ceEEeCCCCCCCCceEEEecCCCCCCccceEEEE--eccceeEEEEec-ce
Confidence 9999999999999999998654321 123334445778999999999642 344444 356777777764 44
Q ss_pred eeE-EEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEE
Q psy4876 503 CLD-SIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581 (609)
Q Consensus 503 ~~~-~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iW 581 (609)
.+. .-...-...++.+.++|.+++. |+.|+.+.+|. +.|..+.++-....+|+.++..|++++++.|+.||+|..|
T Consensus 214 ~Igk~r~L~FdP~CisYf~NGEy~Li--GGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 214 QIGKDRALNFDPCCISYFTNGEYILL--GGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred eecccccCCCCchhheeccCCcEEEE--ccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehh
Confidence 443 3334457889999999999999 66899999997 5677777776677899999999999999999999999999
Q ss_pred EcCCCc
Q psy4876 582 KIFEKV 587 (609)
Q Consensus 582 dl~~~~ 587 (609)
++-...
T Consensus 291 Nl~fST 296 (1081)
T KOG1538|consen 291 NLIFST 296 (1081)
T ss_pred hhHHhH
Confidence 875443
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-18 Score=178.85 Aligned_cols=280 Identities=22% Similarity=0.354 Sum_probs=208.2
Q ss_pred EEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCC---
Q psy4876 273 NLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGY--- 348 (609)
Q Consensus 273 ~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~--- 348 (609)
+..+|.|.+++|.|....|.+||..+ . ..+..+. |...|+|+.|-|+..
T Consensus 18 ~v~sw~~~~~vafGa~~~Iav~dp~k-------------------------~--~i~t~l~GH~a~VnC~~~l~~s~~~a 70 (764)
T KOG1063|consen 18 KVSSWGPGGLVAFGAGPAIAVADPEK-------------------------I--LIVTTLDGHVARVNCVHWLPTSEIVA 70 (764)
T ss_pred ccccccccceEEecCCceEEEeCccc-------------------------c--eeEEeccCCccceEEEEEcccccccc
Confidence 34678889999999999999999866 2 3445555 999999999999886
Q ss_pred EEEEEeCCCeEEEEeCCCC--eeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCC------------------
Q psy4876 349 MLGVGTSLGTVQLWDVSAK--KKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRD------------------ 408 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~--~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~------------------ 408 (609)
++++|+.||.|.+|.++.. ..+..+.+|...+.|+.-......+...|+.+.+||....+
T Consensus 71 ~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLc 150 (764)
T KOG1063|consen 71 EMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLC 150 (764)
T ss_pred eEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHH
Confidence 8999999999999999843 34566777666555554433333344688889999884211
Q ss_pred -------------------------------eeEEEEccCCCCeEEEEEccCC---CEEEEEeCCCcEEEEeCCCCCCCC
Q psy4876 409 -------------------------------HKVALLQNHTQEVCGLKWSPDG---RYLASGGNDNLLNIWSGVPGQHTF 454 (609)
Q Consensus 409 -------------------------------~~~~~~~~h~~~V~~l~~spdg---~~lasgs~Dg~I~iwd~~~~~~~~ 454 (609)
..+..+.+|.+.|.+|+|...+ -+||++++|..|+||.+.-.....
T Consensus 151 L~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~ 230 (764)
T KOG1063|consen 151 LAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDED 230 (764)
T ss_pred HhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcc
Confidence 2234567899999999998744 489999999999999876443100
Q ss_pred -----------C----ccce----------EeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC--ceeEEE
Q psy4876 455 -----------S----TQPI----------HSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG--ACLDSI 507 (609)
Q Consensus 455 -----------~----~~~~----------~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~--~~~~~~ 507 (609)
. .... ..+.+|...|.++.|+|.+..||.+ +.|.++.+|.-.+. --+...
T Consensus 231 ~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSA---SaDksmiiW~pd~~tGiWv~~v 307 (764)
T KOG1063|consen 231 SNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSA---SADKSMIIWKPDENTGIWVDVV 307 (764)
T ss_pred ccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheec---ccCcceEEEecCCccceEEEEE
Confidence 0 0111 1234899999999999998666655 48999999987644 222222
Q ss_pred c----CC--CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC---CceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCE
Q psy4876 508 D----TK--SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS---LVKVAELHGHSARVLNLAMSPDETTVLSAGADETL 578 (609)
Q Consensus 508 ~----~~--~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~---~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I 578 (609)
. .+ .......|++++..+++- +..|..++|.... ......+.||.+.|.+++|+|.|.+|+++|.|.+-
T Consensus 308 RlGe~gg~a~GF~g~lw~~n~~~ii~~--g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTT 385 (764)
T KOG1063|consen 308 RLGEVGGSAGGFWGGLWSPNSNVIIAH--GRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTT 385 (764)
T ss_pred EeecccccccceeeEEEcCCCCEEEEe--cccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccce
Confidence 2 11 257899999999877763 3789999998332 23344567999999999999999999999999999
Q ss_pred EEEEcC
Q psy4876 579 RLWKIF 584 (609)
Q Consensus 579 ~iWdl~ 584 (609)
|+|--.
T Consensus 386 RlFa~w 391 (764)
T KOG1063|consen 386 RLFARW 391 (764)
T ss_pred eeeccc
Confidence 998766
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.1e-18 Score=182.10 Aligned_cols=253 Identities=21% Similarity=0.252 Sum_probs=192.1
Q ss_pred eecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEeCCCCee--EE----EecCCCCceEEEEe--c--CCEEEEEecCCeE
Q psy4876 331 DLEGNENVCSVAWIQEG-YMLGVGTSLGTVQLWDVSAKKK--CR----TMDGHDVRVGALAW--N--TYILSSGSRCGNI 399 (609)
Q Consensus 331 ~~~h~~~V~~v~~spdg-~~Lasgs~dg~I~iwd~~~~~~--~~----~l~~h~~~V~~l~~--~--~~~L~sgs~dg~I 399 (609)
.+.....|+|+.|+|.. .+||.|+.+|.|.+||+..+.. .. ....|...|..+.| + +.-+++++.||.|
T Consensus 238 ~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i 317 (555)
T KOG1587|consen 238 VLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSI 317 (555)
T ss_pred EEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcE
Confidence 34457899999999964 8899999999999999987654 22 22358899999999 2 3568999999999
Q ss_pred EEEEcCCCCeeEEEE-----c------cCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCC--CCccceEeecCC
Q psy4876 400 VHHDVRSRDHKVALL-----Q------NHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHT--FSTQPIHSLSRH 465 (609)
Q Consensus 400 ~iwd~~~~~~~~~~~-----~------~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~--~~~~~~~~~~~h 465 (609)
..|+++....+.... . .-...+++++|.+ +-..|++|+.+|.|..=+-...... ...+....+..|
T Consensus 318 ~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h 397 (555)
T KOG1587|consen 318 CSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITH 397 (555)
T ss_pred eeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccccc
Confidence 999887543211111 1 1124688899988 6678999999999887333322111 112334566779
Q ss_pred cccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC-CCceeEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q psy4876 466 QAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS-SGACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPS 543 (609)
Q Consensus 466 ~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~-t~~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~ 543 (609)
.++|.++.++|.+..++.++| |-+++||... ...++..+..+. .+++++|||....++++ +..+|.|.|||+..
T Consensus 398 ~g~v~~v~~nPF~~k~fls~g---DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~-~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 398 IGPVYAVSRNPFYPKNFLSVG---DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT-VDGDGNLDIWDLLQ 473 (555)
T ss_pred CcceEeeecCCCccceeeeec---cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE-EcCCCceehhhhhc
Confidence 999999999999998888874 9999999988 666666666554 59999999998887766 55899999999853
Q ss_pred --CceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 544 --LVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 544 --~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
..++....-+....+.+.|+++|+.|+.|...|++.+|++...-
T Consensus 474 ~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l 519 (555)
T KOG1587|consen 474 DDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESL 519 (555)
T ss_pred cccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCchh
Confidence 44555555556677888899999999999999999999996433
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-18 Score=169.07 Aligned_cols=296 Identities=18% Similarity=0.282 Sum_probs=207.3
Q ss_pred eEEEEEecCCC---eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 271 YLNLIDWSHFN---VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 271 ~v~~l~wsp~~---lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
.+..++|.++. +.++|.|..|+||.+........ ...++.+..+. |...|++|.|+|+
T Consensus 15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~------------------~~~V~y~s~Ls~H~~aVN~vRf~p~ 76 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG------------------DMKVEYLSSLSRHTRAVNVVRFSPD 76 (434)
T ss_pred ceEEEEeccCcccceecccCccceeeeeeeecCCCCC------------------ceeEEEeecccCCcceeEEEEEcCC
Confidence 35667777752 56699999999999987422210 03566667777 9999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCC--------C--------CeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCC
Q psy4876 347 GYMLGVGTSLGTVQLWDVS--------A--------KKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRD 408 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~--------~--------~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~ 408 (609)
|..||+|+.+|.|.+|-.. + ....+.+.+|...|..++| ++.++++++.|..+++||+..+
T Consensus 77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G- 155 (434)
T KOG1009|consen 77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG- 155 (434)
T ss_pred cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc-
Confidence 9999999999999999765 2 2345677889999999999 6899999999999999999998
Q ss_pred eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCc---------------cceEeec--CCcccEEE
Q psy4876 409 HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFST---------------QPIHSLS--RHQAAVKA 471 (609)
Q Consensus 409 ~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~---------------~~~~~~~--~h~~~V~~ 471 (609)
.....+..|...|..++|.|-++++++-+.|...+++.+......... ...+.+. ........
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR 235 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR 235 (434)
T ss_pred eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence 578889999999999999999999999999987777765543211000 0011110 01123456
Q ss_pred EEEcCCCCcEEEEEecc-------CCCeEEEEECCC-CceeEEEcCC-CCeEEEEEcC-----------------CCCeE
Q psy4876 472 IAWCPWSPNVLASGGGT-------ADRHIYFWNVSS-GACLDSIDTK-SQVCALLWNS-----------------DYKEL 525 (609)
Q Consensus 472 l~~sp~~~~llasggGs-------~Dg~I~iwd~~t-~~~~~~~~~~-~~v~sl~~s~-----------------~g~~l 525 (609)
++|+|+|. ++++..|. .-+..++|+-.. ..+...+... .....+.|+| -++.+
T Consensus 236 lsfTPdG~-llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 236 LSFTPDGS-LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred cccCCCCc-EEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 78999985 44443211 122334454331 1122222211 1233333332 23333
Q ss_pred EEEEecCCCeEEEEECCCCceEEEEeC-CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 526 VSAHGFAQNQLIIWKYPSLVKVAELHG-HSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 526 ~~~sG~~dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
++.. ..+.|+|||..+..++..... |-..|++++|++||.+|+..+.||..-+-.++..+.
T Consensus 315 faiA--t~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 315 FAIA--TKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred EEEe--ecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 3332 488999999999888877643 888999999999999999999999988877766554
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-18 Score=175.73 Aligned_cols=118 Identities=19% Similarity=0.384 Sum_probs=98.6
Q ss_pred ccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc-------eeEEEcCC-CCeEEEEEcCCCC-eEEEEEecCCCeEE
Q psy4876 467 AAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA-------CLDSIDTK-SQVCALLWNSDYK-ELVSAHGFAQNQLI 537 (609)
Q Consensus 467 ~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~-------~~~~~~~~-~~v~sl~~s~~g~-~l~~~sG~~dg~I~ 537 (609)
..|+.+.|.|....-|++++ .||.|++|.+..+. ....+..+ ..|+++.|+|-.. .|+++ ..|-+|+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~--ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~a--syd~Ti~ 703 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVAT--DDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVA--SYDSTIE 703 (1012)
T ss_pred ceeeecccCCCChHHeeecc--cCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhh--hccceee
Confidence 45788899998888888874 89999999997653 23344444 4899999999754 44453 3799999
Q ss_pred EEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 538 IWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 538 Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
+||+.+++....+.+|++.|.+++|||||+.+++.+.||+|++|+-...+.
T Consensus 704 lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 704 LWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred eeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence 999999999999999999999999999999999999999999999877654
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=166.40 Aligned_cols=281 Identities=19% Similarity=0.324 Sum_probs=207.6
Q ss_pred EEEEEecC------CCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec---CCCCeEEEE
Q psy4876 272 LNLIDWSH------FNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE---GNENVCSVA 342 (609)
Q Consensus 272 v~~l~wsp------~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---h~~~V~~v~ 342 (609)
+..++|++ -+++|....+.|.+|+.... +.+..+.... +++....++
T Consensus 41 I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d------------------------~~ir~lq~y~D~d~~Esfytcs 96 (385)
T KOG1034|consen 41 IFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGD------------------------GGIRLLQSYADEDHDESFYTCS 96 (385)
T ss_pred cceeeeehhcCCCCCceEEEeCCcEEEEEEECCc------------------------cceeeeeeccCCCCCcceEEEE
Confidence 44566653 14888888889999988762 2223333332 778888999
Q ss_pred EccCC----CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEE-
Q psy4876 343 WIQEG----YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALL- 414 (609)
Q Consensus 343 ~spdg----~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~- 414 (609)
|+-+. .+||+|+.-|.|+|.|+.++++...+.+|...|..|.+. ++++++++.|-.|++|++++. .++..+
T Consensus 97 w~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~-~Cv~VfG 175 (385)
T KOG1034|consen 97 WSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD-VCVAVFG 175 (385)
T ss_pred EEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC-eEEEEec
Confidence 98753 588999999999999999999999999999999999994 679999999999999999986 455554
Q ss_pred --ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCC------------c---------cceE-eecCCcccEE
Q psy4876 415 --QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS------------T---------QPIH-SLSRHQAAVK 470 (609)
Q Consensus 415 --~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~------------~---------~~~~-~~~~h~~~V~ 470 (609)
.+|.++|.++.|+++|.+|++++.|..|++|++...+.... . -+.. +-..|...|-
T Consensus 176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 57999999999999999999999999999999984321000 0 0111 2234777888
Q ss_pred EEEEcCCCCcEEEEEeccCCCeEEEEEC-CCCce-------------eEEEcCC-CCeEE--EEEcCCCCeEEEEEecCC
Q psy4876 471 AIAWCPWSPNVLASGGGTADRHIYFWNV-SSGAC-------------LDSIDTK-SQVCA--LLWNSDYKELVSAHGFAQ 533 (609)
Q Consensus 471 ~l~~sp~~~~llasggGs~Dg~I~iwd~-~t~~~-------------~~~~~~~-~~v~s--l~~s~~g~~l~~~sG~~d 533 (609)
|+.|-- .++++-+ -++.|..|.. .-++. +..++.. ..++- .+|.+-++.|+. |...
T Consensus 256 Cvrw~g---d~ilSks--cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~--gnq~ 328 (385)
T KOG1034|consen 256 CVRWFG---DFILSKS--CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL--GNQS 328 (385)
T ss_pred HHHHHh---hheeecc--cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh--ccCC
Confidence 888864 3455542 5789999987 22221 2222222 23443 455677888887 7799
Q ss_pred CeEEEEECCCCceE--EEEeC--CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 534 NQLIIWKYPSLVKV--AELHG--HSARVLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 534 g~I~Iwd~~~~~~~--~~l~~--h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
|.|.+||+...++. .++.. ....|...+|+.||.+|+..+.|++|.-||.-
T Consensus 329 g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 329 GKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999876552 22221 23579999999999999999999999999853
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-18 Score=167.50 Aligned_cols=270 Identities=21% Similarity=0.308 Sum_probs=193.2
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC--CCEEEEEeCCCe
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE--GYMLGVGTSLGT 358 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd--g~~Lasgs~dg~ 358 (609)
++++-+.|.|+|||..+ +. .+..+. +...+..+.|..+ ...+.+|+.||+
T Consensus 43 vav~lSngsv~lyd~~t-------------------------g~--~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~ 95 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGT-------------------------GQ--LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGT 95 (376)
T ss_pred EEEEecCCeEEEEeccc-------------------------hh--hhheecCCCCcccceEEecCCCCCeeEEeccCCe
Confidence 55567789999999987 33 344455 6777888888774 478999999999
Q ss_pred EEEEeCCCCeeEE--EecCCC-CceEEEEe--cCCEEEEEec----CCeEEEEEcCCCCeeE-EEEccCCCCeEEEEEcc
Q psy4876 359 VQLWDVSAKKKCR--TMDGHD-VRVGALAW--NTYILSSGSR----CGNIVHHDVRSRDHKV-ALLQNHTQEVCGLKWSP 428 (609)
Q Consensus 359 I~iwd~~~~~~~~--~l~~h~-~~V~~l~~--~~~~L~sgs~----dg~I~iwd~~~~~~~~-~~~~~h~~~V~~l~~sp 428 (609)
|++||++...... .+..+. .+..+++- +++++++|.. +-.|.+||++..++.+ .....|...|+++.|+|
T Consensus 96 Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 96 VRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred EEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence 9999998765443 334454 45666766 4678888753 6779999999887634 34568999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEE
Q psy4876 429 -DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI 507 (609)
Q Consensus 429 -dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~ 507 (609)
+.++|++|+.||.|.|||+...... ..+.....|...|.++.|...+-.-+.+- +......+|+++.+.+...+
T Consensus 176 ~~pnlLlSGSvDGLvnlfD~~~d~Ee---DaL~~viN~~sSI~~igw~~~~ykrI~cl--TH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 176 SDPNLLLSGSVDGLVNLFDTKKDNEE---DALLHVINHGSSIHLIGWLSKKYKRIMCL--THMETFAIYELEDGSEETWL 250 (376)
T ss_pred CCCCeEEeecccceEEeeecCCCcch---hhHHHhhcccceeeeeeeecCCcceEEEE--EccCceeEEEccCCChhhcc
Confidence 6789999999999999999865221 34445556788899999998873333333 47999999999988866554
Q ss_pred cCCC-------------CeEEEEEcCCCCeEEEEEecCCCeEEEEECC------CCceEEEEeC-CCCCEEEEEEeCCCC
Q psy4876 508 DTKS-------------QVCALLWNSDYKELVSAHGFAQNQLIIWKYP------SLVKVAELHG-HSARVLNLAMSPDET 567 (609)
Q Consensus 508 ~~~~-------------~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~------~~~~~~~l~~-h~~~V~~l~~spdg~ 567 (609)
.... .+.......+....+++ |..-|...++-+. ..+.+..+.+ |...|.++.|...+.
T Consensus 251 ~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~-g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~ 329 (376)
T KOG1188|consen 251 ENPDVSADDLRKEDNCDYVINEHSPGDKDTCALA-GTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKND 329 (376)
T ss_pred cCccchhhhHHhhhhhhheeecccCCCcceEEEe-ccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccc
Confidence 3221 12222222233344443 4335555554332 2345566666 777889999998899
Q ss_pred EEEEEECCCCEEEEEcC
Q psy4876 568 TVLSAGADETLRLWKIF 584 (609)
Q Consensus 568 ~L~s~s~Dg~I~iWdl~ 584 (609)
.++|||.||.|.+|...
T Consensus 330 ~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 330 VLYTGGEDGLLQAWKVE 346 (376)
T ss_pred eeeccCCCceEEEEecC
Confidence 99999999999999963
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-18 Score=171.38 Aligned_cols=244 Identities=18% Similarity=0.262 Sum_probs=195.8
Q ss_pred CCCCeEEEEEccCC--CEEEEEeCCCeEEEEeCCCC----eeEEEecCCCCceEEEEe---cCCEEEEEecCCeEEEEEc
Q psy4876 334 GNENVCSVAWIQEG--YMLGVGTSLGTVQLWDVSAK----KKCRTMDGHDVRVGALAW---NTYILSSGSRCGNIVHHDV 404 (609)
Q Consensus 334 h~~~V~~v~~spdg--~~Lasgs~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~ 404 (609)
+.+.|++++|+|.. +.+|+|..-|.|-+||+.+. ..+..+..|..+|.+|.| +...+++.+.||+|+.-|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 78999999999975 68899999999999999532 346677889999999999 4578999999999999999
Q ss_pred CCCC-eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEE
Q psy4876 405 RSRD-HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 405 ~~~~-~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla 483 (609)
.... ..+..+......++++.|+.+...++.|..=|...+||+++.. .....+.-|...|..|+++|..+++++
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~-----s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG-----SEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCC-----ccchhhhhhhcccceeecCCCCchhee
Confidence 8753 1222333345667888999888888888887899999999874 335566678889999999999999999
Q ss_pred EEeccCCCeEEEEECCCC--c---eeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC----CCceEEEEeCCC
Q psy4876 484 SGGGTADRHIYFWNVSSG--A---CLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYP----SLVKVAELHGHS 554 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t~--~---~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~----~~~~~~~l~~h~ 554 (609)
+++ .|++.+|||++.- + .+..+.+.-.|.+..|||.+..|++.+ .|+.|+|||.. .......+. |.
T Consensus 340 T~s--~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~--~D~~IRv~dss~~sa~~~p~~~I~-Hn 414 (498)
T KOG4328|consen 340 TAS--LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC--QDNEIRVFDSSCISAKDEPLGTIP-HN 414 (498)
T ss_pred ecc--cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec--cCCceEEeecccccccCCccceee-cc
Confidence 985 9999999999842 2 256666777999999999998888754 89999999983 344444443 32
Q ss_pred C------CEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 555 A------RVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 555 ~------~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
. ......|.|+..+|++|-.-..|-|+|-..+.
T Consensus 415 ~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 415 NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred CcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 1 24567899999999999998889999987766
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-18 Score=177.10 Aligned_cols=235 Identities=18% Similarity=0.300 Sum_probs=189.4
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecC----CEEEEEecCCeEEEEEc-----
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT----YILSSGSRCGNIVHHDV----- 404 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~----~~L~sgs~dg~I~iwd~----- 404 (609)
|.+.|.+++..|.|.+||+|+.||+|+||.+.+|.+++++. ..+.|.|++|++ .+|+++-... +.|.+.
T Consensus 399 Htg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~ 476 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDR 476 (733)
T ss_pred cCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEeCccccch
Confidence 99999999999999999999999999999999999999987 566899999953 3444443332 333322
Q ss_pred ----------------------------CC---CCeeEEEEccCCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCC
Q psy4876 405 ----------------------------RS---RDHKVALLQNHTQEVCGLKWSPDGRYLASGGND---NLLNIWSGVPG 450 (609)
Q Consensus 405 ----------------------------~~---~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~D---g~I~iwd~~~~ 450 (609)
.. .+.-+.....|...|..+.|+..|.||++..-+ ..|.|+++...
T Consensus 477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~ 556 (733)
T KOG0650|consen 477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR 556 (733)
T ss_pred hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccc
Confidence 11 111123344588899999999999999998764 46899998876
Q ss_pred CCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCC-CeEEEEEcCCCCeEEEEE
Q psy4876 451 QHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKS-QVCALLWNSDYKELVSAH 529 (609)
Q Consensus 451 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~-~v~sl~~s~~g~~l~~~s 529 (609)
....-|....+.|.++.|+|....++++ ....|+|||+.....+..+..+. .|..++.+|.|..|++
T Consensus 557 ------~sQ~PF~kskG~vq~v~FHPs~p~lfVa----Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~-- 624 (733)
T KOG0650|consen 557 ------KSQSPFRKSKGLVQRVKFHPSKPYLFVA----TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL-- 624 (733)
T ss_pred ------cccCchhhcCCceeEEEecCCCceEEEE----eccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE--
Confidence 2333444556779999999999888876 47999999999888887776665 7899999999999999
Q ss_pred ecCCCeEEEEECCCC-ceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEE
Q psy4876 530 GFAQNQLIIWKYPSL-VKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWK 582 (609)
Q Consensus 530 G~~dg~I~Iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWd 582 (609)
|+.|+.++.||+.-. ++.+.++.|...|++|+||+.-.++++|+.||++.|+-
T Consensus 625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 668999999999755 56677888999999999999999999999999998874
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-17 Score=157.41 Aligned_cols=284 Identities=14% Similarity=0.261 Sum_probs=204.8
Q ss_pred cCCceeEEEEEecCC----CeEEEEc-----CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCC
Q psy4876 266 IQNDYYLNLIDWSHF----NVLAVAL-----GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNE 336 (609)
Q Consensus 266 ~~~~~~v~~l~wsp~----~lla~s~-----dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~ 336 (609)
....|.+..++|+.. -.||+|. .+.|.|-.+.. +.++......++|.-
T Consensus 41 Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~-----------------------~s~e~~~~a~fd~~Y 97 (364)
T KOG0290|consen 41 YNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDE-----------------------DSGELVEDANFDHPY 97 (364)
T ss_pred ecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEcc-----------------------CCCceeccCCCCCCC
Confidence 344567889999942 3566543 46677665543 114555555567899
Q ss_pred CeEEEEEccCC-----CEEEEEeCCCeEEEEeCCCCee----EEEe-----cCCCCceEEEEe---cCCEEEEEecCCeE
Q psy4876 337 NVCSVAWIQEG-----YMLGVGTSLGTVQLWDVSAKKK----CRTM-----DGHDVRVGALAW---NTYILSSGSRCGNI 399 (609)
Q Consensus 337 ~V~~v~~spdg-----~~Lasgs~dg~I~iwd~~~~~~----~~~l-----~~h~~~V~~l~~---~~~~L~sgs~dg~I 399 (609)
+++.+.|.|+. ++||+++ ..++||.+...+. ...+ ..+..+++++.| +++++.+++-|-+.
T Consensus 98 P~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTC 175 (364)
T KOG0290|consen 98 PVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTC 175 (364)
T ss_pred CccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeE
Confidence 99999999985 4566544 4799999874221 1111 246678999999 47999999999999
Q ss_pred EEEEcCCCC--eeEEEEccCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcC
Q psy4876 400 VHHDVRSRD--HKVALLQNHTQEVCGLKWSPDG-RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476 (609)
Q Consensus 400 ~iwd~~~~~--~~~~~~~~h~~~V~~l~~spdg-~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 476 (609)
.|||+.++. .....+-.|..+|..|+|...+ +.||+.|.||.|++||++..++. ..+..-.....+...++|++
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS---TIIYE~p~~~~pLlRLswnk 252 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS---TIIYEDPSPSTPLLRLSWNK 252 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc---eEEecCCCCCCcceeeccCc
Confidence 999999852 3456677899999999999854 47999999999999999987432 23333333356788999999
Q ss_pred CCCcEEEEEeccCCCeEEEEECCC-CceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce------EE
Q psy4876 477 WSPNVLASGGGTADRHIYFWNVSS-GACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK------VA 548 (609)
Q Consensus 477 ~~~~llasggGs~Dg~I~iwd~~t-~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~------~~ 548 (609)
...+++|+-. .....|.|.|++. ...+..+..| +.|..++|.|.....++.+| +|.++.|||+...-. +.
T Consensus 253 qDpnymATf~-~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG-DD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 253 QDPNYMATFA-MDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG-DDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CCchHHhhhh-cCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC-CcceEEEEecccccccCCCCchh
Confidence 9999888764 4668899999995 4456666654 68999999999877666655 899999999976433 22
Q ss_pred EEeCCCCCEEEEEEeC-CCCEEEEEECCCCEEEE
Q psy4876 549 ELHGHSARVLNLAMSP-DETTVLSAGADETLRLW 581 (609)
Q Consensus 549 ~l~~h~~~V~~l~~sp-dg~~L~s~s~Dg~I~iW 581 (609)
.+. -.+.|+.+.|++ .+.+|+.+.. +.+.|-
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~-kkleiL 362 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEIL 362 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEec-CeeeEE
Confidence 222 457799999996 4567776654 444443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-16 Score=165.87 Aligned_cols=273 Identities=12% Similarity=0.178 Sum_probs=181.8
Q ss_pred EEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEe-CCCeEEE
Q psy4876 283 LAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGT-SLGTVQL 361 (609)
Q Consensus 283 la~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs-~dg~I~i 361 (609)
++.+.++.|++|++.+. +.+..+..+.+.+....++++|++++|++++ .++.|.+
T Consensus 6 ~~~~~~~~I~~~~~~~~------------------------g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~ 61 (330)
T PRK11028 6 IASPESQQIHVWNLNHE------------------------GALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLS 61 (330)
T ss_pred EEcCCCCCEEEEEECCC------------------------CceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEE
Confidence 44567899999999641 4555556665556788899999999987765 4788999
Q ss_pred EeCCC-Cee--EEEecCCCCceEEEEec--CCEEEEEe-cCCeEEEEEcCCCCe---eEEEEccCCCCeEEEEEccCCCE
Q psy4876 362 WDVSA-KKK--CRTMDGHDVRVGALAWN--TYILSSGS-RCGNIVHHDVRSRDH---KVALLQNHTQEVCGLKWSPDGRY 432 (609)
Q Consensus 362 wd~~~-~~~--~~~l~~h~~~V~~l~~~--~~~L~sgs-~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spdg~~ 432 (609)
|++.. ++. +.... .......++|+ +++|++++ .++.|.+|++..... .+..+. +.....+++++|+|++
T Consensus 62 ~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~ 139 (330)
T PRK11028 62 YRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRT 139 (330)
T ss_pred EEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCE
Confidence 99973 332 22222 23345678884 67777665 488999999974321 222222 3345677899999998
Q ss_pred EEEEe-CCCcEEEEeCCCCCCCCC-ccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC--Cc--eeEE
Q psy4876 433 LASGG-NDNLLNIWSGVPGQHTFS-TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS--GA--CLDS 506 (609)
Q Consensus 433 lasgs-~Dg~I~iwd~~~~~~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t--~~--~~~~ 506 (609)
+++++ .++.|.+||+.+...... ......... ......++|+|++..++++.. .++.|.+||+.. ++ .+..
T Consensus 140 l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~--~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 140 LWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNE--LNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred EEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEec--CCCEEEEEEEeCCCCCEEEEEE
Confidence 86555 569999999976321100 000111111 234578999999987777653 589999999973 33 2333
Q ss_pred EcCC-------CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC---CCCEEEEEEeCCCCEEEEEEC-C
Q psy4876 507 IDTK-------SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH---SARVLNLAMSPDETTVLSAGA-D 575 (609)
Q Consensus 507 ~~~~-------~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h---~~~V~~l~~spdg~~L~s~s~-D 575 (609)
+... .....+.++|++++++++. ..++.|.+|++........+.+| ......+.|+|||++|+++.. +
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~-~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~ 295 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRHLYACD-RTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS 295 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCEEEEec-CCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC
Confidence 3211 1234688999999999863 35789999998654322222222 124568899999999998775 8
Q ss_pred CCEEEEEcCC
Q psy4876 576 ETLRLWKIFE 585 (609)
Q Consensus 576 g~I~iWdl~~ 585 (609)
++|.+|++..
T Consensus 296 ~~v~v~~~~~ 305 (330)
T PRK11028 296 HHISVYEIDG 305 (330)
T ss_pred CcEEEEEEcC
Confidence 9999999863
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.7e-17 Score=156.66 Aligned_cols=251 Identities=16% Similarity=0.281 Sum_probs=188.1
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC-
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE- 346 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd- 346 (609)
-|+++.|..-| +++++.|++|.|||.... .+......... |++.|..|.|.+-
T Consensus 15 lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~-----------------------s~~W~~Ts~Wrah~~Si~rV~WAhPE 71 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCSSDQTVKIWDSTSD-----------------------SGTWSCTSSWRAHDGSIWRVVWAHPE 71 (361)
T ss_pred eeeeeeecccCceeeeccCCCcEEEEeccCC-----------------------CCceEEeeeEEecCCcEEEEEecCcc
Confidence 47888888765 888999999999997541 15666666666 9999999999763
Q ss_pred -CCEEEEEeCCCeEEEEeCCC---------CeeEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCCCe---
Q psy4876 347 -GYMLGVGTSLGTVQLWDVSA---------KKKCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSRDH--- 409 (609)
Q Consensus 347 -g~~Lasgs~dg~I~iwd~~~---------~~~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~~~--- 409 (609)
|+.+|+++.|+++.||.-.. -....++......|+.+.|. |-.|++++.||.++||+.-....
T Consensus 72 fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 72 FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence 79999999999999997631 12455677788899999993 67899999999999998754321
Q ss_pred --eEEE-------EccCCCCeEEEEEccC---CCEEEEEeCC-----CcEEEEeCCCCCCCCCccceEeecCCcccEEEE
Q psy4876 410 --KVAL-------LQNHTQEVCGLKWSPD---GRYLASGGND-----NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI 472 (609)
Q Consensus 410 --~~~~-------~~~h~~~V~~l~~spd---g~~lasgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l 472 (609)
.... ...+.....|+.|+|. ..+||+|+.+ +.++||...... .....+.++.+|..+|++|
T Consensus 152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~--rKw~kva~L~d~~dpI~di 229 (361)
T KOG2445|consen 152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG--RKWLKVAELPDHTDPIRDI 229 (361)
T ss_pred chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc--ceeeeehhcCCCCCcceee
Confidence 1111 1246778899999983 4578888876 478999876552 1235667778999999999
Q ss_pred EEcCCCC---cEEEEEeccCCCeEEEEECCCC--------------------ceeEEEcC-CCCeEEEEEcCCCCeEEEE
Q psy4876 473 AWCPWSP---NVLASGGGTADRHIYFWNVSSG--------------------ACLDSIDT-KSQVCALLWNSDYKELVSA 528 (609)
Q Consensus 473 ~~sp~~~---~llasggGs~Dg~I~iwd~~t~--------------------~~~~~~~~-~~~v~sl~~s~~g~~l~~~ 528 (609)
+|.|.-. +++|++ +.|| |+||++... +.+..+.. .++|..+.|+-.|..|.++
T Consensus 230 ~wAPn~Gr~y~~lAvA--~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsSt 306 (361)
T KOG2445|consen 230 SWAPNIGRSYHLLAVA--TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSST 306 (361)
T ss_pred eeccccCCceeeEEEe--ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeec
Confidence 9999643 477777 4799 999998731 12233433 4599999999999999885
Q ss_pred EecCCCeEEEEECC---CCceEEEEe
Q psy4876 529 HGFAQNQLIIWKYP---SLVKVAELH 551 (609)
Q Consensus 529 sG~~dg~I~Iwd~~---~~~~~~~l~ 551 (609)
++||.|++|... ..+++..+.
T Consensus 307 --GdDG~VRLWkany~n~~kC~sv~~ 330 (361)
T KOG2445|consen 307 --GDDGCVRLWKANYNNLWKCTSVLK 330 (361)
T ss_pred --CCCceeeehhhhhhhhheeeeEEe
Confidence 389999999853 344555554
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-15 Score=160.64 Aligned_cols=278 Identities=29% Similarity=0.535 Sum_probs=215.9
Q ss_pred eeEEEEEecCCC-eE-EEEc-CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 270 YYLNLIDWSHFN-VL-AVAL-GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 270 ~~v~~l~wsp~~-ll-a~s~-dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
..|..++|+|++ .+ +++. ++.+++|+... +. .+..+. |...|.+++|+|
T Consensus 156 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~--~~~~~~~~~~~v~~~~~~~ 208 (466)
T COG2319 156 ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-------------------------GK--PLSTLAGHTDPVSSLAFSP 208 (466)
T ss_pred ccEEEEEECCCCCEEEecCCCCCceEEEEcCC-------------------------Cc--eEEeeccCCCceEEEEEcC
Confidence 457789999997 34 4443 99999999976 22 223333 889999999999
Q ss_pred CCC-EEEEEeCCCeEEEEeCCCCeeEE-EecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCe
Q psy4876 346 EGY-MLGVGTSLGTVQLWDVSAKKKCR-TMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEV 421 (609)
Q Consensus 346 dg~-~Lasgs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 421 (609)
++. .+++++.|+.|++||...+..+. .+.+|...+ ...| ++..+++++.|+.+++|++.........+..|...|
T Consensus 209 ~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v 287 (466)
T COG2319 209 DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV 287 (466)
T ss_pred CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccE
Confidence 997 55555899999999998888887 688888874 3355 567888999999999999997654344446789999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee--cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC
Q psy4876 422 CGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL--SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS 499 (609)
Q Consensus 422 ~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~ 499 (609)
.++.|+|++..+++++.|+.+.+||.... ...... ..|...+..+.| ......++.++ ..|+.+.+|++.
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~d~~~~~~~~~ 359 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETG------KLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGG-SDDGTIRLWDLR 359 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCC------ceEEEeeecccCCceEEEEE-CCCCCEEEEee-cCCCcEEeeecC
Confidence 99999998888888999999999988876 333333 367778999999 43213444442 467999999999
Q ss_pred CCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEE
Q psy4876 500 SGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLR 579 (609)
Q Consensus 500 t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~ 579 (609)
.............+..+.+.+ . ......+..++.+.+|+............+...+....+++++..+++++.++.++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (466)
T COG2319 360 TGKPLKTLEGHSNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIR 437 (466)
T ss_pred CCceeEEecCCceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEE
Confidence 877444444444489999999 6 55544456899999999998888777765547899999999999999999999999
Q ss_pred EEEcCC
Q psy4876 580 LWKIFE 585 (609)
Q Consensus 580 iWdl~~ 585 (609)
+|++..
T Consensus 438 ~~~~~~ 443 (466)
T COG2319 438 LWDLKT 443 (466)
T ss_pred EEeccC
Confidence 999988
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-15 Score=159.44 Aligned_cols=280 Identities=31% Similarity=0.534 Sum_probs=216.3
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec--CCCCeEEEEE-
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE--GNENVCSVAW- 343 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--h~~~V~~v~~- 343 (609)
...+..+.+.+.+ ++.++.|+.+.+|+... +. ..+..+. +...+..+.+
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~-------------------------~~-~~~~~~~~~~~~~~~~~~~~ 118 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDN-------------------------GE-KLIKSLEGLHDSSVSKLALS 118 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCC-------------------------Cc-eeEEEEeccCCCceeeEEEE
Confidence 4457788888875 55566799999999987 32 1222222 2236777777
Q ss_pred ccCCC-EEEEEeC-CCeEEEEeCCC-CeeEEEecCCCCceEEEEe--cCCEEEEEec-CCeEEEEEcCCCCeeEEEEccC
Q psy4876 344 IQEGY-MLGVGTS-LGTVQLWDVSA-KKKCRTMDGHDVRVGALAW--NTYILSSGSR-CGNIVHHDVRSRDHKVALLQNH 417 (609)
Q Consensus 344 spdg~-~Lasgs~-dg~I~iwd~~~-~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~-dg~I~iwd~~~~~~~~~~~~~h 417 (609)
.+++. +++..+. |+.+.+|+... ......+..|...|..++| ++..+++++. |+.+.+|++... ..+..+.+|
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 197 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-KPLSTLAGH 197 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-ceEEeeccC
Confidence 77777 5555444 89999999998 7888999999999999999 4567888875 999999999984 477788889
Q ss_pred CCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCCCCCCccceE-eecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEE
Q psy4876 418 TQEVCGLKWSPDGR-YLASGGNDNLLNIWSGVPGQHTFSTQPIH-SLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYF 495 (609)
Q Consensus 418 ~~~V~~l~~spdg~-~lasgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~i 495 (609)
...|.+++|+|++. .+++++.|+.|++||...+ ..+. .+..|...+ ...|++++ .+++++ +.|+.+++
T Consensus 198 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~--~~d~~~~~ 267 (466)
T COG2319 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG------KLLRSTLSGHSDSV-VSSFSPDG-SLLASG--SSDGTIRL 267 (466)
T ss_pred CCceEEEEEcCCcceEEEEecCCCcEEEEECCCC------cEEeeecCCCCcce-eEeECCCC-CEEEEe--cCCCcEEE
Confidence 99999999999998 5555599999999988855 4555 577787775 44899988 455554 48999999
Q ss_pred EECCCCce-eEEE-cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe--CCCCCEEEEEEeCCCCEEEE
Q psy4876 496 WNVSSGAC-LDSI-DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH--GHSARVLNLAMSPDETTVLS 571 (609)
Q Consensus 496 wd~~t~~~-~~~~-~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~L~s 571 (609)
||+..... +..+ .+...+.++.|.|++..+++ .+ .|+.+.+|+........... .|...|..+.|.+++..++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (466)
T COG2319 268 WDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS-GS-SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS 345 (466)
T ss_pred eeecCCCcEEEEEecCCccEEEEEECCCCCEEEE-ee-CCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEE
Confidence 99986664 4444 33468999999998888888 34 55889999998887777665 78888999999434356666
Q ss_pred E-ECCCCEEEEEcCCCc
Q psy4876 572 A-GADETLRLWKIFEKV 587 (609)
Q Consensus 572 ~-s~Dg~I~iWdl~~~~ 587 (609)
+ ..|+.+.+|++....
T Consensus 346 ~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 346 GGSDDGTIRLWDLRTGK 362 (466)
T ss_pred eecCCCcEEeeecCCCc
Confidence 5 688999999998876
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-17 Score=158.27 Aligned_cols=246 Identities=19% Similarity=0.321 Sum_probs=182.5
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC----e--------eEEEec-CCCCceEEEEe---------cCCEEEEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAK----K--------KCRTMD-GHDVRVGALAW---------NTYILSSG 393 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~----~--------~~~~l~-~h~~~V~~l~~---------~~~~L~sg 393 (609)
.....+.|+|||..|++-+.|..+.+|++... + ...++. .....|...+| +..++++.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 34557899999999999999999999988521 0 111111 13456777777 24788999
Q ss_pred ecCCeEEEEEcCCCCeeEEEEc--cCCCC---eEEEEEccCCCEEEEEeCCCcEEEEeC-CCCCCCCCccceEe-ecCCc
Q psy4876 394 SRCGNIVHHDVRSRDHKVALLQ--NHTQE---VCGLKWSPDGRYLASGGNDNLLNIWSG-VPGQHTFSTQPIHS-LSRHQ 466 (609)
Q Consensus 394 s~dg~I~iwd~~~~~~~~~~~~--~h~~~---V~~l~~spdg~~lasgs~Dg~I~iwd~-~~~~~~~~~~~~~~-~~~h~ 466 (609)
+++.-|++||.-++. ....+. .|..+ ..+++|+|||.+|+.|.. ++|+++|+ +.|........+.. -.+..
T Consensus 130 sr~~PIh~wdaftG~-lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGK-LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred cccCceeeeeccccc-cccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhccccccc
Confidence 999999999999874 333333 24333 457999999999998765 89999999 55532111111111 22346
Q ss_pred ccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-C
Q psy4876 467 AAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS-L 544 (609)
Q Consensus 467 ~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~-~ 544 (609)
+.|.+++|+|....++++|+ ....+-||.-..+.++..+..+ +.|+.+.|.++|+.|++++- .+-.|..||++. .
T Consensus 208 giisc~a~sP~~~~~~a~gs--Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR-k~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGS--YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR-KDDKILCWDIRYSR 284 (406)
T ss_pred ceeeeeeccCCCCcceeeec--ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc-CCCeEEEEeehhcc
Confidence 78899999999988999874 8889999988888888877654 69999999999999999643 688899999975 4
Q ss_pred ceEEEEeCCCC-CEEE--EEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 545 VKVAELHGHSA-RVLN--LAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 545 ~~~~~l~~h~~-~V~~--l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
..+..|..|.+ .-.. ....|+|++|++|+.||.|++||+...
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC
Confidence 56667777755 2223 445689999999999999999999883
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.6e-17 Score=159.74 Aligned_cols=202 Identities=17% Similarity=0.328 Sum_probs=167.2
Q ss_pred CCCCeEEEEEccC-CCEEEEEeCCCeEEEEeCCCC-------eeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEE
Q psy4876 334 GNENVCSVAWIQE-GYMLGVGTSLGTVQLWDVSAK-------KKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHH 402 (609)
Q Consensus 334 h~~~V~~v~~spd-g~~Lasgs~dg~I~iwd~~~~-------~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iw 402 (609)
|.+.|..++|+|- ...||+|+.|.+|.||++..+ +.+..+.+|..+|.-++|+ .+.|++++.|.+|.+|
T Consensus 80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence 9999999999995 488999999999999999754 3467889999999999997 4899999999999999
Q ss_pred EcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCccc-EEEEEEcCCCCcE
Q psy4876 403 DVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAA-VKAIAWCPWSPNV 481 (609)
Q Consensus 403 d~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp~~~~l 481 (609)
++.++. .+..+. |...|.++.|+.||.+|++.+.|..|+|||.+++ ..+..-.+|.+. -..+.|-.++. +
T Consensus 160 nv~tge-ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~------~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 160 NVGTGE-ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG------TVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eccCCc-eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC------cEeeecccccCCCcceeEEeccCc-e
Confidence 999985 444555 9999999999999999999999999999999998 666666667653 34566777775 6
Q ss_pred EEEEe-ccCCCeEEEEECCCC---ceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc
Q psy4876 482 LASGG-GTADRHIYFWNVSSG---ACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV 545 (609)
Q Consensus 482 lasgg-Gs~Dg~I~iwd~~t~---~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~ 545 (609)
+.+|- ...++.+-+||..+- -...++++.+.|.---|.++.+.++.+ |-.|+.|+-|.+....
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~-GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLC-GKGDSSIRYFEITNEP 297 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEE-ecCCcceEEEEecCCC
Confidence 66653 235789999997643 345667778888888899998888776 6789999999986654
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-17 Score=155.53 Aligned_cols=237 Identities=18% Similarity=0.282 Sum_probs=169.2
Q ss_pred eeeeeeec--CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCee-EEEec-----CCCCceEEEEec----CCEEEEE
Q psy4876 326 IDHLMDLE--GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKK-CRTMD-----GHDVRVGALAWN----TYILSSG 393 (609)
Q Consensus 326 ~~~l~~~~--h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~-~~~l~-----~h~~~V~~l~~~----~~~L~sg 393 (609)
++.+..+. +-+.|.||.|.|++..|++-. |..|.+|+++.+.. +..+. +|....++-+|+ ++.+++
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t- 189 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT- 189 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-
Confidence 45555555 557999999999999888665 68899999987755 33332 255667777883 455555
Q ss_pred ecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEE
Q psy4876 394 SRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR-YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI 472 (609)
Q Consensus 394 s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l 472 (609)
..|+++..||+++.......-..|...|..+.|+|+.+ +|++|+.||.|+|||.+..+ .++..+.+|...|.++
T Consensus 190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-----~pv~el~~HsHWvW~V 264 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-----FPVQELPGHSHWVWAV 264 (370)
T ss_pred eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-----ccccccCCCceEEEEE
Confidence 45799999999987655566678999999999999766 58999999999999999774 7899999999999999
Q ss_pred EEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC
Q psy4876 473 AWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 473 ~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~ 552 (609)
.|+|....|+.+|| .|..|.+|...+-.....+. |-.+....- + .+..=++=-+. ...+.++..
T Consensus 265 Rfn~~hdqLiLs~~--SDs~V~Lsca~svSSE~qi~---------~~~dese~e---~-~dseer~kpL~-dg~l~tyde 328 (370)
T KOG1007|consen 265 RFNPEHDQLILSGG--SDSAVNLSCASSVSSEQQIE---------FEDDESESE---D-EDSEERVKPLQ-DGQLETYDE 328 (370)
T ss_pred EecCccceEEEecC--CCceeEEEeccccccccccc---------cccccccCc---c-hhhHHhccccc-ccccccccc
Confidence 99999999999985 89999999875322111111 111100000 0 00000000001 123445668
Q ss_pred CCCCEEEEEEeCCCC-EEEEEECCCCEEEEEcCC
Q psy4876 553 HSARVLNLAMSPDET-TVLSAGADETLRLWKIFE 585 (609)
Q Consensus 553 h~~~V~~l~~spdg~-~L~s~s~Dg~I~iWdl~~ 585 (609)
|++.|.+++||.-.. ++|+-+.||.+.|=++..
T Consensus 329 hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 329 HEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 999999999998655 557789999999866643
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.5e-18 Score=173.79 Aligned_cols=249 Identities=17% Similarity=0.196 Sum_probs=192.4
Q ss_pred eec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC--------CeeEEEecCCCCceEEEEe--cCCEEEEEecCCeE
Q psy4876 331 DLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSA--------KKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNI 399 (609)
Q Consensus 331 ~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~--------~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I 399 (609)
++. |.+.|+.++|.+-...|++++.||.|.+|+++. -+.+.++.+|.++|.|++. ++..+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 444 889999999999999999999999999999942 2567899999999999999 78999999999999
Q ss_pred EEEEcCCC---------CeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC--Cccc
Q psy4876 400 VHHDVRSR---------DHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR--HQAA 468 (609)
Q Consensus 400 ~iwd~~~~---------~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~--h~~~ 468 (609)
+.|++... ......+.||++.|+.+++|+....|++++.||+|++|+..... + .++.. ..+.
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~------~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEES------P-CTFGEPKEHGY 441 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcC------c-cccCCccccCC
Confidence 99965421 12346788999999999999998899999999999999987662 2 12211 1223
Q ss_pred EEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC--------CCCeEEEEEcCCCCeEEEEEecCCCeEEEEE
Q psy4876 469 VKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT--------KSQVCALLWNSDYKELVSAHGFAQNQLIIWK 540 (609)
Q Consensus 469 V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~--------~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd 540 (609)
-..+.+-.......++.. .-+.-.++++..+..+..+.. ...+.-+.++|.+...++++ .++.|+++|
T Consensus 442 Plsvd~~ss~~a~~~~s~--~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h--ed~~Ir~~d 517 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASF--RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH--EDRSIRFFD 517 (577)
T ss_pred cceEeeccchhHhhhhhc--ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc--cCCceeccc
Confidence 345555443322222210 233333444444444444431 13578899999998888865 899999999
Q ss_pred CCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 541 YPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 541 ~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
..++..+.....|...|+++++.|+|.+|++++.|+.|++|++.......
T Consensus 518 n~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 518 NKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred ccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence 99999999999999999999999999999999999999999997665443
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=158.54 Aligned_cols=238 Identities=21% Similarity=0.370 Sum_probs=179.1
Q ss_pred CeEEEEEcc-----CCCEEEEE---eCCCeEEEEeCC-CCe---eEEEecCCCCceEEEEe---cCCEEEEEecCCeEEE
Q psy4876 337 NVCSVAWIQ-----EGYMLGVG---TSLGTVQLWDVS-AKK---KCRTMDGHDVRVGALAW---NTYILSSGSRCGNIVH 401 (609)
Q Consensus 337 ~V~~v~~sp-----dg~~Lasg---s~dg~I~iwd~~-~~~---~~~~l~~h~~~V~~l~~---~~~~L~sgs~dg~I~i 401 (609)
.|+-+.|.. +.++||+. +..|...|.-+. +|+ ..-.+.+|.++|..++| |.+.|++|+.|.+|.|
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~v 108 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMV 108 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEE
Confidence 455555543 34566652 233444444332 232 23345689999999999 5689999999999999
Q ss_pred EEcCCCC------eeEEEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEE
Q psy4876 402 HDVRSRD------HKVALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAW 474 (609)
Q Consensus 402 wd~~~~~------~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 474 (609)
|++.... +.+..+.+|...|.-++|+| -.+.|++++.|++|.+||+.++ +.+.++. |...|.++.|
T Consensus 109 W~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg------eali~l~-hpd~i~S~sf 181 (472)
T KOG0303|consen 109 WQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG------EALITLD-HPDMVYSMSF 181 (472)
T ss_pred EECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCC------ceeeecC-CCCeEEEEEe
Confidence 9987543 45788999999999999999 4568999999999999999999 5566666 9999999999
Q ss_pred cCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCC--CeEEEEEcCCCCeEEEEEec---CCCeEEEEECCCCceE--
Q psy4876 475 CPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKS--QVCALLWNSDYKELVSAHGF---AQNQLIIWKYPSLVKV-- 547 (609)
Q Consensus 475 sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~--~v~sl~~s~~g~~l~~~sG~---~dg~I~Iwd~~~~~~~-- 547 (609)
+-+|..+..++ .|+.|+|||.++++.+..-..|. ....+.|-.+|. +++. |+ .+.++-+||....+..
T Consensus 182 n~dGs~l~Ttc---kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tT-Gfsr~seRq~aLwdp~nl~eP~~ 256 (472)
T KOG0303|consen 182 NRDGSLLCTTC---KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTT-GFSRMSERQIALWDPNNLEEPIA 256 (472)
T ss_pred ccCCceeeeec---ccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeee-ccccccccceeccCcccccCcce
Confidence 99996554443 89999999999999998875443 566778888988 3332 44 4788999998765432
Q ss_pred -EEEeCCCCCEEEEEEeCCCCEEEEEE-CCCCEEEEEcCCCc
Q psy4876 548 -AELHGHSARVLNLAMSPDETTVLSAG-ADETLRLWKIFEKV 587 (609)
Q Consensus 548 -~~l~~h~~~V~~l~~spdg~~L~s~s-~Dg~I~iWdl~~~~ 587 (609)
.++. ....|.---|.+|...|+.+| .|+.||.|.+....
T Consensus 257 ~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 257 LQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 3333 345677777889988887655 59999999998776
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.7e-17 Score=155.66 Aligned_cols=212 Identities=22% Similarity=0.294 Sum_probs=156.8
Q ss_pred EEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCee---EEEEccCCCCeEEEEEccCCCEE-EEEeCCCcEEE
Q psy4876 371 RTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHK---VALLQNHTQEVCGLKWSPDGRYL-ASGGNDNLLNI 444 (609)
Q Consensus 371 ~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~spdg~~l-asgs~Dg~I~i 444 (609)
..+++|...|++++| ||..|++++.|+.|++|+++.-... .....-.-+..+.+.|.||-+-+ +++-....+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 357899999999999 7999999999999999999864211 11111122356788999987754 44556678999
Q ss_pred EeCCCCCCCC---CccceE---eecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCC-CeEEEE
Q psy4876 445 WSGVPGQHTF---STQPIH---SLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKS-QVCALL 517 (609)
Q Consensus 445 wd~~~~~~~~---~~~~~~---~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~-~v~sl~ 517 (609)
|-+....... ...... --..|...|..+-....+ .+++++ +.|..|.+|+++ |+.+..++... .-...+
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsa--s~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSA--SLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEe--cCCCcEEEEecC-Cceeeeecccccccccee
Confidence 9876543211 111111 123456666666665544 566666 489999999999 99999998764 677889
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECC--------CCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 518 WNSDYKELVSAHGFAQNQLIIWKYP--------SLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 518 ~s~~g~~l~~~sG~~dg~I~Iwd~~--------~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
.+|+|++++++ | -.-.|++|..- .-..+..|.||...|+.++|+++...++|++.||++||||..-...
T Consensus 236 vSP~GRFia~~-g-FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 236 VSPDGRFIAVS-G-FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred eCCCCcEEEEe-c-CCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence 99999999986 3 45679999852 2345678899999999999999999999999999999999875443
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.7e-17 Score=154.44 Aligned_cols=237 Identities=21% Similarity=0.344 Sum_probs=179.8
Q ss_pred ceeEEEEEecCCC-----eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeee------eecCCCC
Q psy4876 269 DYYLNLIDWSHFN-----VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLM------DLEGNEN 337 (609)
Q Consensus 269 ~~~v~~l~wsp~~-----lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~h~~~ 337 (609)
.|.++.+-|.|+. -+.++.+..++||.+...+ ....... .-++..+
T Consensus 96 ~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee-----------------------~~~~~~~~L~~~kns~~~aP 152 (364)
T KOG0290|consen 96 PYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEE-----------------------SRVELQSVLNNNKNSEFCAP 152 (364)
T ss_pred CCCccceEecCCccccCcchhhcccCeEEEEeccCcC-----------------------CceehhhhhccCcccccCCc
Confidence 3556667777763 2335566789999997511 1111111 1126789
Q ss_pred eEEEEEccC-CCEEEEEeCCCeEEEEeCCCCe---eEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCee
Q psy4876 338 VCSVAWIQE-GYMLGVGTSLGTVQLWDVSAKK---KCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 338 V~~v~~spd-g~~Lasgs~dg~I~iwd~~~~~---~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
+++..|+.- -++|.+++-|-+..|||++++. ....+-.|...|..++|. -+.|++.+.||.+++||++..++.
T Consensus 153 lTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS 232 (364)
T KOG0290|consen 153 LTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS 232 (364)
T ss_pred ccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc
Confidence 999999874 4899999999999999999863 466788999999999993 489999999999999999988765
Q ss_pred EEEEccC--CCCeEEEEEcc-CCCEEEEEeCC-CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 411 VALLQNH--TQEVCGLKWSP-DGRYLASGGND-NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 411 ~~~~~~h--~~~V~~l~~sp-dg~~lasgs~D-g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
...+... ..+...++|++ |-+++|+-..| ..|.|.|++... .++..+.+|.+.|.+++|.|....-++++|
T Consensus 233 TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~-----tpva~L~~H~a~VNgIaWaPhS~~hictaG 307 (364)
T KOG0290|consen 233 TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC-----TPVARLRNHQASVNGIAWAPHSSSHICTAG 307 (364)
T ss_pred eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC-----cceehhhcCcccccceEecCCCCceeeecC
Confidence 5555533 46788999998 66778776554 579999999763 789999999999999999999999999986
Q ss_pred ccCCCeEEEEECCCCc------eeEEEcCCCCeEEEEEcC-CCCeEEEEEecCCCeEEE
Q psy4876 487 GTADRHIYFWNVSSGA------CLDSIDTKSQVCALLWNS-DYKELVSAHGFAQNQLII 538 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t~~------~~~~~~~~~~v~sl~~s~-~g~~l~~~sG~~dg~I~I 538 (609)
.|..+.+||+...- ++..+...+.|..+.|++ ...+++++. ++.+.|
T Consensus 308 --DD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~---~kklei 361 (364)
T KOG0290|consen 308 --DDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF---GKKLEI 361 (364)
T ss_pred --CcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe---cCeeeE
Confidence 89999999997432 233445667899999995 456676654 344444
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=154.34 Aligned_cols=194 Identities=19% Similarity=0.311 Sum_probs=159.7
Q ss_pred eEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCcc
Q psy4876 380 VGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQ 457 (609)
Q Consensus 380 V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~ 457 (609)
..|+.|+ |.+|++|+.||.|.|||+.+.. ....+.+|..+|++++||+||+.|++++.|..|.+||+..| .
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g------s 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG------S 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC------C
Confidence 6788884 8999999999999999999974 77788999999999999999999999999999999999999 6
Q ss_pred ceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeE-EEcCC----CCeEEEEEcCCCCeEEEEEecC
Q psy4876 458 PIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLD-SIDTK----SQVCALLWNSDYKELVSAHGFA 532 (609)
Q Consensus 458 ~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~-~~~~~----~~v~sl~~s~~g~~l~~~sG~~ 532 (609)
+++.+. ..++|....|+|...+.+++.- .+..-.+-++..+.... ..+.. ....+..|.+.|+++++ |..
T Consensus 99 ~l~rir-f~spv~~~q~hp~k~n~~va~~--~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIit--Gts 173 (405)
T KOG1273|consen 99 PLKRIR-FDSPVWGAQWHPRKRNKCVATI--MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIIT--GTS 173 (405)
T ss_pred ceeEEE-ccCccceeeeccccCCeEEEEE--ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEE--ecC
Confidence 777765 5789999999998877766653 45555666665422111 11111 12334468999999999 668
Q ss_pred CCeEEEEECCCCceEEEEeCCC-CCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 533 QNQLIIWKYPSLVKVAELHGHS-ARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 533 dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
.|.+.++|..+.+++..++-.. ..|.++.|+..|..|+.-+.|..||.|++..
T Consensus 174 KGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 174 KGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred cceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 9999999999999999887655 7899999999999999999999999999873
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=167.18 Aligned_cols=247 Identities=21% Similarity=0.284 Sum_probs=179.8
Q ss_pred EEEEEccC---CCEEEEEeCCCeEEEEeCCCCee------EEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCC
Q psy4876 339 CSVAWIQE---GYMLGVGTSLGTVQLWDVSAKKK------CRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSR 407 (609)
Q Consensus 339 ~~v~~spd---g~~Lasgs~dg~I~iwd~~~~~~------~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~ 407 (609)
.+..|++. ...||++..||.|.++|...... +.....|...|..+.| ....|++++.|.+|++||+.+.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 34666653 37899999999999999875432 3555679999999999 3578999999999999999987
Q ss_pred CeeEEE--EccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCC--------------CC---C----ccceEeec
Q psy4876 408 DHKVAL--LQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQH--------------TF---S----TQPIHSLS 463 (609)
Q Consensus 408 ~~~~~~--~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~--------------~~---~----~~~~~~~~ 463 (609)
. .+.. +.+|...|.+++|.| +...|++|+.||.|.|||++.... .. . .+.+....
T Consensus 133 ~-l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 133 R-LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred e-eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 4 4444 789999999999999 556799999999999999875421 00 0 01122333
Q ss_pred CCcccEEE---EEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc--------CC----CCeEEEEEcCCCCeEEEE
Q psy4876 464 RHQAAVKA---IAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID--------TK----SQVCALLWNSDYKELVSA 528 (609)
Q Consensus 464 ~h~~~V~~---l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~--------~~----~~v~sl~~s~~g~~l~~~ 528 (609)
.+...|.+ +.+..|. ..|+++|+ .|+.|+|||++...+..... .+ -.+.++.....|.+|++.
T Consensus 212 A~s~ti~ssvTvv~fkDe-~tlaSaga-~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As 289 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDE-STLASAGA-ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS 289 (720)
T ss_pred cccCceeeeeEEEEEecc-ceeeeccC-CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence 44445554 4455555 46666653 79999999999765443221 12 257888888999999986
Q ss_pred EecCCCeEEEEECCCC--ceEEEEeCCCCC--EEEEEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 529 HGFAQNQLIIWKYPSL--VKVAELHGHSAR--VLNLAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 529 sG~~dg~I~Iwd~~~~--~~~~~l~~h~~~--V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
+ .|+.|++|++.+. .++..+.++... -..-..+||+.+|++|+.|+..++|.+...+...
T Consensus 290 C--tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~ 353 (720)
T KOG0321|consen 290 C--TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP 353 (720)
T ss_pred e--cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCCh
Confidence 5 7999999999764 344455544321 1223468999999999999999999998876543
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-16 Score=154.29 Aligned_cols=286 Identities=17% Similarity=0.270 Sum_probs=211.1
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccC
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQE 346 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spd 346 (609)
.-+||+|.||.++ ++++|.|..+++|+++.. ......+...+..-.|...|.|++|.-.
T Consensus 56 ~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~-------------------~~~k~~KPI~~~~~~H~SNIF~L~F~~~ 116 (609)
T KOG4227|consen 56 TGCINALQFSHNDRFLASGGDDMHGRVWNVDEL-------------------MVRKTPKPIGVMEHPHRSNIFSLEFDLE 116 (609)
T ss_pred ccccceeeeccCCeEEeecCCcceeeeechHHH-------------------HhhcCCCCceeccCccccceEEEEEccC
Confidence 3469999999986 555888899999998751 0000022233333337799999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecC--CCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeE--EEEccCCCC
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDG--HDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKV--ALLQNHTQE 420 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~--~~~~~h~~~ 420 (609)
..+|++|..+|+|.+-|+++.+.+..+.. ..+.|..+.-+ .+.|++.+.+|.|.+||.+.....+ ..+......
T Consensus 117 N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~ 196 (609)
T KOG4227|consen 117 NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKN 196 (609)
T ss_pred CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcc
Confidence 99999999999999999999888877753 23478888775 5899999999999999999765222 223344566
Q ss_pred eEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec------CCcccEEEEEEcCCCCcEEEEEeccCCCeE
Q psy4876 421 VCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS------RHQAAVKAIAWCPWSPNVLASGGGTADRHI 493 (609)
Q Consensus 421 V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~llasggGs~Dg~I 493 (609)
...+.|+| ...+|++.+..+-+.+||.+... .++.... .....-..+.|+|.|..+++.- ....-
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~-----~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR---R~~~P 268 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPNVFDRRMQA-----RPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR---RGKCP 268 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCCceeecccc-----chHHhhhccccCcccchhhhheeeCCCCCeehhhh---ccCCC
Confidence 78889999 45678888888999999999764 2222221 1122235788999998888764 45666
Q ss_pred EEEECCCCce-eEEEcCC-------CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC---------------------
Q psy4876 494 YFWNVSSGAC-LDSIDTK-------SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL--------------------- 544 (609)
Q Consensus 494 ~iwd~~t~~~-~~~~~~~-------~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~--------------------- 544 (609)
.+||+-+..| +..+++. ..+.+++|..+.. +++ |+++-.|+||.++..
T Consensus 269 ~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~t--GSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~ 345 (609)
T KOG4227|consen 269 LYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VAT--GSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIF 345 (609)
T ss_pred EEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eec--cCcccceEEEecCCCccccCccccCcchhhCchhhe
Confidence 7888887554 3344422 1466788887776 444 778999999998521
Q ss_pred --ceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 545 --VKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 545 --~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
..+..++||...+..+.|+|...+|++.+-...++||.-.
T Consensus 346 i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 346 IEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 2345678999999999999999999999999999999654
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-15 Score=142.30 Aligned_cols=236 Identities=17% Similarity=0.213 Sum_probs=178.3
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCC----------CeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcC
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSA----------KKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVR 405 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~----------~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~ 405 (609)
..|.+-+|+|.+++|++|..+|.|.+..+.+ ...+...++|+++|..++|...+|++|+. |.|+-|..+
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~ 89 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWN 89 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeeh
Confidence 3466778999999999999999999998853 13455668999999999998888888775 999999876
Q ss_pred CCCeeEE-------EEccC-----CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEE
Q psy4876 406 SRDHKVA-------LLQNH-----TQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473 (609)
Q Consensus 406 ~~~~~~~-------~~~~h-----~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~ 473 (609)
...+... ....| --+|+++...|..+-++.++.|+.++-||+++| +..+.+.+|...|.++.
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G------~i~r~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG------RIQREYRGHTDYVHSVV 163 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC------EEEEEEcCCcceeeeee
Confidence 4321110 01112 246889999997777777778999999999999 78899999999999998
Q ss_pred EcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCC---------CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q psy4876 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKS---------QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL 544 (609)
Q Consensus 474 ~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~---------~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~ 544 (609)
--.....+| +| ++||++++||+++++++..+.... .-.-.+..-+..+++++ ....+.+|+++..
T Consensus 164 ~R~~~~qil-sG--~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCG---gGp~lslwhLrss 237 (325)
T KOG0649|consen 164 GRNANGQIL-SG--AEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG---GGPKLSLWHLRSS 237 (325)
T ss_pred ecccCccee-ec--CCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEec---CCCceeEEeccCC
Confidence 844343444 54 499999999999999999886321 11123444456677763 3578999999999
Q ss_pred ceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 545 VKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 545 ~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
++...+. -..+|..+.|- ...+++++..+.|.-|.+....
T Consensus 238 e~t~vfp-ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gvl 277 (325)
T KOG0649|consen 238 ESTCVFP-IPARVHLVDFV--DDCVLIGGEGNHVQSYTLNGVL 277 (325)
T ss_pred CceEEEe-cccceeEeeee--cceEEEeccccceeeeeeccEE
Confidence 8888775 34668888884 4478888888888888876543
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=150.13 Aligned_cols=291 Identities=19% Similarity=0.257 Sum_probs=199.2
Q ss_pred CCccccccCCccCCceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec
Q psy4876 255 LTADRILDAPEIQNDYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE 333 (609)
Q Consensus 255 ~~p~~il~ap~~~~~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 333 (609)
..|.-+|. | +...|+++.|-.++ ++++..-|.|.+|++.+ ..-....++.
T Consensus 4 PdP~fvLR-p---~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt-------------------------~r~~~~~r~~ 54 (323)
T KOG0322|consen 4 PDPFFVLR-P---HSSSVTSVLFQANERLMSGLSVGIVKMWVLQT-------------------------ERDLPLIRLF 54 (323)
T ss_pred CCCeeEec-c---ccchheehhhccchhhhcccccceEEEEEeec-------------------------Cccchhhhhh
Confidence 34445554 2 23457888887765 88899999999999998 5555555544
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCC-eEEEEEcC-------
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCG-NIVHHDVR------- 405 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg-~I~iwd~~------- 405 (609)
+...|+.+...|+ ..|.+-+.|+.+.+|++.-+..+.. |.-.+.++.|-..-+...+... ....++-+
T Consensus 55 g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~ 130 (323)
T KOG0322|consen 55 GRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHK 130 (323)
T ss_pred ccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhh
Confidence 7889999999987 5677888999999999986544332 3344455555222222211111 11111111
Q ss_pred --CCC-eeEEEE----ccCCCCeEEEEEcc-CCC--EEEEEeCCCcEEEEeCCCCCCCCC----ccceEeecCCcccEEE
Q psy4876 406 --SRD-HKVALL----QNHTQEVCGLKWSP-DGR--YLASGGNDNLLNIWSGVPGQHTFS----TQPIHSLSRHQAAVKA 471 (609)
Q Consensus 406 --~~~-~~~~~~----~~h~~~V~~l~~sp-dg~--~lasgs~Dg~I~iwd~~~~~~~~~----~~~~~~~~~h~~~V~~ 471 (609)
.+. ..+... .+..+.+.+..|.. ++. +++.|-++|.|.+||+..+..... .+.+.....|..+|.+
T Consensus 131 ~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvls 210 (323)
T KOG0322|consen 131 QDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLS 210 (323)
T ss_pred hccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCccee
Confidence 111 111111 12345677777544 333 467788899999999998732211 1233445678999999
Q ss_pred EEEcCCCCcEEEEEeccCCCeEEEEECCC--CceeE--EEc-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce
Q psy4876 472 IAWCPWSPNVLASGGGTADRHIYFWNVSS--GACLD--SID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK 546 (609)
Q Consensus 472 l~~sp~~~~llasggGs~Dg~I~iwd~~t--~~~~~--~~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~ 546 (609)
+.+.+.-..- ++| ..+..+..|++.. +.+.. .+. .+..+..+..-||++.++++. .|+.|+||..+++.+
T Consensus 211 ldyas~~~rG-isg--ga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG--WD~RiRVyswrtl~p 285 (323)
T KOG0322|consen 211 LDYASSCDRG-ISG--GADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG--WDHRIRVYSWRTLNP 285 (323)
T ss_pred eeechhhcCC-cCC--CccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecc--cCCcEEEEEeccCCc
Confidence 9998643322 333 3788888998863 43322 222 345788999999999999964 899999999999999
Q ss_pred EEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEc
Q psy4876 547 VAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKI 583 (609)
Q Consensus 547 ~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl 583 (609)
+..++-|.+.|++++|+||..++|+|+.|+.|.+|++
T Consensus 286 LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 286 LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999999999997
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-16 Score=158.57 Aligned_cols=257 Identities=16% Similarity=0.244 Sum_probs=187.0
Q ss_pred EEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEcc-----
Q psy4876 272 LNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQ----- 345 (609)
Q Consensus 272 v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~sp----- 345 (609)
|.++.|+.+. ++.++.|..+.+|.-.+. .-..+..+..+.-.+.+-.-+
T Consensus 17 vc~v~w~~~eei~~~~dDh~~~~~~~~~~-------------------------~s~~~~~~p~df~pt~~h~~~rs~~~ 71 (737)
T KOG1524|consen 17 VCCVDWSSNEEIYFVSDDHQIFKWSDVSR-------------------------DSVEVAKLPDDFVPTDMHLGGRSSGG 71 (737)
T ss_pred EEeecccccceEEEeccCceEEEeecccc-------------------------hhhhhhhCCcccCCccccccccccCC
Confidence 4689998874 888888888877765441 111111111111111111111
Q ss_pred --CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCe
Q psy4876 346 --EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEV 421 (609)
Q Consensus 346 --dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 421 (609)
....|+.++.||.+.|.+- .++..+.+..|.+.+.+-.| +|.-|+++++||.|++|.-... ...++......|
T Consensus 72 g~~~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRStl~Q~~~~v 148 (737)
T KOG1524|consen 72 GKGSDTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRSTVVQNEESI 148 (737)
T ss_pred CCCcceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHHHHhhcCcee
Confidence 1267888999999999874 46777888999999999999 5889999999999999986542 444555667889
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 422 CGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 422 ~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
.|++|.|+.+-++.+. .+.+.|=.+... ..+..+..|.+-|.++.|++.. .++++|| .|-..++||-...
T Consensus 149 ~c~~W~p~S~~vl~c~-g~h~~IKpL~~n------~k~i~WkAHDGiiL~~~W~~~s-~lI~sgG--ED~kfKvWD~~G~ 218 (737)
T KOG1524|consen 149 RCARWAPNSNSIVFCQ-GGHISIKPLAAN------SKIIRWRAHDGLVLSLSWSTQS-NIIASGG--EDFRFKIWDAQGA 218 (737)
T ss_pred EEEEECCCCCceEEec-CCeEEEeecccc------cceeEEeccCcEEEEeecCccc-cceeecC--CceeEEeecccCc
Confidence 9999999887766654 367777777665 5667888999999999999976 6888886 9999999997654
Q ss_pred ceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEE
Q psy4876 502 ACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581 (609)
Q Consensus 502 ~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iW 581 (609)
....+-.+..+|++++|.|+ +.++.. .-+++++ -....+.|..++||+||..++.|+..|.|.+=
T Consensus 219 ~Lf~S~~~ey~ITSva~npd-~~~~v~---S~nt~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 219 NLFTSAAEEYAITSVAFNPE-KDYLLW---SYNTARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ccccCChhccceeeeeeccc-cceeee---eeeeeee-----------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 44444455679999999999 444442 2344441 12356789999999999999999999988653
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-15 Score=164.58 Aligned_cols=277 Identities=17% Similarity=0.211 Sum_probs=192.7
Q ss_pred EEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec--CCCCeEEEEEccC--CC
Q psy4876 275 IDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE--GNENVCSVAWIQE--GY 348 (609)
Q Consensus 275 l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--h~~~V~~v~~spd--g~ 348 (609)
+.++|-. ++++.....|+|||.+. ++.-.-+... ....|+.+.+..+ ..
T Consensus 1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~-------------------------~~~l~~F~n~~~~~t~Vs~l~liNe~D~a 1124 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEK-------------------------GRLLNGFDNGAFPDTRVSDLELINEQDDA 1124 (1387)
T ss_pred eeecCCCceeEEcCCcceEEEEeccc-------------------------CceeccccCCCCCCCccceeeeecccchh
Confidence 4555532 44444456899999987 3321111111 4578999998653 47
Q ss_pred EEEEEeCCCeEEEEeCCC-----CeeEEEecC-------CCCceEEEEe---cCCEEEEEecCCeEEEEEcCCCCeeEEE
Q psy4876 349 MLGVGTSLGTVQLWDVSA-----KKKCRTMDG-------HDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~-----~~~~~~l~~-------h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~~~~~~~~ 413 (609)
+|.+|+.||.|+||+-.. .+.+....+ ..+.-.-+.| +|+++++| .-..|+|||..... .+..
T Consensus 1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~-~~~d 1202 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQ-VVAD 1202 (1387)
T ss_pred heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccce-eEee
Confidence 899999999999997432 233333221 1122244677 35555555 47899999998753 3333
Q ss_pred E-ccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCccc--EEEEEEcCCCCcEEEEEeccC
Q psy4876 414 L-QNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAA--VKAIAWCPWSPNVLASGGGTA 489 (609)
Q Consensus 414 ~-~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~--V~~l~~sp~~~~llasggGs~ 489 (609)
+ .+....|+++.-+- .|+.|++|..||.|++||.+..... ..+.....|+.. |..+.+.+.|-.-+++| +.
T Consensus 1203 iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d---s~v~~~R~h~~~~~Iv~~slq~~G~~elvSg--s~ 1277 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD---SLVCVYREHNDVEPIVHLSLQRQGLGELVSG--SQ 1277 (1387)
T ss_pred cccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc---ccceeecccCCcccceeEEeecCCCcceeee--cc
Confidence 3 34455677665443 5799999999999999999876322 467777888887 99999999776657776 59
Q ss_pred CCeEEEEECCCCceeE--EEc----CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC-------CCC
Q psy4876 490 DRHIYFWNVSSGACLD--SID----TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH-------SAR 556 (609)
Q Consensus 490 Dg~I~iwd~~t~~~~~--~~~----~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h-------~~~ 556 (609)
||.|++||++...... ++. .++.++++..+++...+++ |+. +.|.||++. |+.+..++.+ .+.
T Consensus 1278 ~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAs--Gs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs 1353 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIAS--GSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGS 1353 (1387)
T ss_pred CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeee--cCc-ceEEEEecC-hhhhcccccCcccccCcCCC
Confidence 9999999999743222 222 2446999999999999998 434 999999974 3333333322 356
Q ss_pred EEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 557 VLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 557 V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
+.|++|||-.-.||+|+.|.+|.||.+....
T Consensus 1354 ~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1354 VSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 7999999999999999999999999987654
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-15 Score=162.99 Aligned_cols=251 Identities=20% Similarity=0.299 Sum_probs=182.3
Q ss_pred CCccccccCCccCCceeEEEEEecCCC---eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeee-
Q psy4876 255 LTADRILDAPEIQNDYYLNLIDWSHFN---VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLM- 330 (609)
Q Consensus 255 ~~p~~il~ap~~~~~~~v~~l~wsp~~---lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 330 (609)
..|+.++..+ ..|.++.|+|.. ++.|+.+|.|.+||+..+.... ...+.
T Consensus 233 ~~Pe~~~~~~-----s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~----------------------~s~ls~ 285 (555)
T KOG1587|consen 233 NTPELVLESP-----SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP----------------------PSGLSA 285 (555)
T ss_pred CCceEEEecC-----CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC----------------------Cccccc
Confidence 4566666544 248888888853 5557779999999998732110 12222
Q ss_pred -eecCCCCeEEEEEccCC--CEEEEEeCCCeEEEEeCCCCee------EEEec------CCCCceEEEEe---cCCEEEE
Q psy4876 331 -DLEGNENVCSVAWIQEG--YMLGVGTSLGTVQLWDVSAKKK------CRTMD------GHDVRVGALAW---NTYILSS 392 (609)
Q Consensus 331 -~~~h~~~V~~v~~spdg--~~Lasgs~dg~I~iwd~~~~~~------~~~l~------~h~~~V~~l~~---~~~~L~s 392 (609)
...|.++|+.+.|..+- .-+++++.||.|..|+++.-.. ..... .....+++++| ++..++.
T Consensus 286 ~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV 365 (555)
T KOG1587|consen 286 LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIV 365 (555)
T ss_pred ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEE
Confidence 22389999999998764 4488999999999998864322 11111 12356788888 6789999
Q ss_pred EecCCeEEEEE---cCCCC----eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCCCCCCccceEeecC
Q psy4876 393 GSRCGNIVHHD---VRSRD----HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGV-PGQHTFSTQPIHSLSR 464 (609)
Q Consensus 393 gs~dg~I~iwd---~~~~~----~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~-~~~~~~~~~~~~~~~~ 464 (609)
|+.+|.|..-+ .+... .....+..|.+.|.++.++|=+..++..+.|-+|+||... .. .++..+..
T Consensus 366 GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~------~Pl~~~~~ 439 (555)
T KOG1587|consen 366 GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA------SPLLSLDS 439 (555)
T ss_pred EcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC------Ccchhhhh
Confidence 99999988733 33322 1233556788999999999966554444449999999987 33 68888888
Q ss_pred CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc--eeEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 465 HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA--CLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 465 h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~--~~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
+...|++++|+|..+.+++++ ..||.|.+||+.... ++.+... ....+.+.|++.|+.|++ |...|.+.+|++
T Consensus 440 ~~~~v~~vaWSptrpavF~~~--d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lav--Gd~~G~~~~~~l 515 (555)
T KOG1587|consen 440 SPDYVTDVAWSPTRPAVFATV--DGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAV--GDANGTTHILKL 515 (555)
T ss_pred ccceeeeeEEcCcCceEEEEE--cCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEE--ecCCCcEEEEEc
Confidence 888899999999999999997 489999999997443 3444433 346677888888999999 779999999998
Q ss_pred C
Q psy4876 542 P 542 (609)
Q Consensus 542 ~ 542 (609)
.
T Consensus 516 ~ 516 (555)
T KOG1587|consen 516 S 516 (555)
T ss_pred C
Confidence 5
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.6e-17 Score=171.84 Aligned_cols=250 Identities=18% Similarity=0.296 Sum_probs=191.7
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
|...|.|+.|...|.++++|+.|..|+||..+++.++....||.+.|+.++. +..++++++.|..|++|.+..+ .++
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~-~pv 267 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG-APV 267 (1113)
T ss_pred hhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC-chH
Confidence 8899999999999999999999999999999999999999999999999998 4678889999999999999997 588
Q ss_pred EEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccce--------Eee----------------cCCcc
Q psy4876 412 ALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPI--------HSL----------------SRHQA 467 (609)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~--------~~~----------------~~h~~ 467 (609)
..+.+|++.|++|+|+|-. +.+.||++++||.+-.-......+. ..+ .....
T Consensus 268 svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~ 343 (1113)
T KOG0644|consen 268 SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNH 343 (1113)
T ss_pred HHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccc
Confidence 9999999999999999944 7788999999998811000000000 000 00011
Q ss_pred cEEEEEEcCCCCcEEEEEec---------cCCCeEEEEECCCCceeEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEE
Q psy4876 468 AVKAIAWCPWSPNVLASGGG---------TADRHIYFWNVSSGACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLI 537 (609)
Q Consensus 468 ~V~~l~~sp~~~~llasggG---------s~Dg~I~iwd~~t~~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~ 537 (609)
.+.+++|.... .+++++.+ -.+-.+++|++.+|..++.+..+. .+..+.++|-...++...| .||.+.
T Consensus 344 e~~~l~~~~~~-lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag-~dgst~ 421 (1113)
T KOG0644|consen 344 EFEQLAWRSNL-LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAG-YDGSTI 421 (1113)
T ss_pred hhhHhhhhccc-eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhcc-CCCceE
Confidence 12223333221 22222211 135568899999999888887665 7889999999988887766 799999
Q ss_pred EEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 538 IWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 538 Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
|||+-.+.+++...-....+.+..||+||..++....-|.+.|...-.++..+
T Consensus 422 iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k 474 (1113)
T KOG0644|consen 422 IWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQK 474 (1113)
T ss_pred eeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcccc
Confidence 99999988877664334567788999999999988888999998876655443
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=145.39 Aligned_cols=206 Identities=24% Similarity=0.391 Sum_probs=160.4
Q ss_pred eEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEcc--CC
Q psy4876 271 YLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQ--EG 347 (609)
Q Consensus 271 ~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~sp--dg 347 (609)
.|+||.|.|++ -+++-.|..|.+|+++..+... ..+..-...++....++-+|+| +|
T Consensus 125 ~i~cvew~Pns~klasm~dn~i~l~~l~ess~~v--------------------aev~ss~s~e~~~~ftsg~WspHHdg 184 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDDNNIVLWSLDESSKIV--------------------AEVLSSESAEMRHSFTSGAWSPHHDG 184 (370)
T ss_pred ceeeEEEcCCCCeeEEeccCceEEEEcccCcchh--------------------eeecccccccccceecccccCCCCcc
Confidence 58999999985 5666669999999998732100 0000001111566788899998 67
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEec-CCCCceEEEEecC---CEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMD-GHDVRVGALAWNT---YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~~~---~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
+.+++. .|++++.||+++.++...+. .|...|..+.||+ ++|++++.||.|++||.+....++..+.+|...|.+
T Consensus 185 nqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 185 NQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA 263 (370)
T ss_pred ceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence 888754 56899999999887666554 6999999999974 689999999999999999988899999999999999
Q ss_pred EEEcc-CCCEEEEEeCCCcEEEEeCCCCCC-----------------------CCCccceEeecCCcccEEEEEEcCCCC
Q psy4876 424 LKWSP-DGRYLASGGNDNLLNIWSGVPGQH-----------------------TFSTQPIHSLSRHQAAVKAIAWCPWSP 479 (609)
Q Consensus 424 l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~-----------------------~~~~~~~~~~~~h~~~V~~l~~sp~~~ 479 (609)
+.|+| ..+++++|+.|..|.+|....-.. ......+.++..|...|.+++|+.-.+
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 99999 456889999999999997653220 011123457788999999999999999
Q ss_pred cEEEEEeccCCCeEEEEECC
Q psy4876 480 NVLASGGGTADRHIYFWNVS 499 (609)
Q Consensus 480 ~llasggGs~Dg~I~iwd~~ 499 (609)
.++|+- +.||.+.|=.+.
T Consensus 344 WiFASL--SYDGRviIs~V~ 361 (370)
T KOG1007|consen 344 WIFASL--SYDGRVIISSVP 361 (370)
T ss_pred eeEEEe--ccCceEEeecCC
Confidence 999997 599999886654
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-15 Score=146.97 Aligned_cols=228 Identities=19% Similarity=0.274 Sum_probs=173.1
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe----cCCEEEEEecCCeEEEEEcCCCCee-EEEEccCC-CCe
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW----NTYILSSGSRCGNIVHHDVRSRDHK-VALLQNHT-QEV 421 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~----~~~~L~sgs~dg~I~iwd~~~~~~~-~~~~~~h~-~~V 421 (609)
..+|++.++|.|++||..+++.+..+.++...+..+.| .++.+.+++.||+|++||++...+. .....++. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 67899999999999999999999999999999999999 3689999999999999999987533 23344454 466
Q ss_pred EEEEEccCCCEEEEEeC----CCcEEEEeCCCCCCCCCccceEe-ecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEE
Q psy4876 422 CGLKWSPDGRYLASGGN----DNLLNIWSGVPGQHTFSTQPIHS-LSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496 (609)
Q Consensus 422 ~~l~~spdg~~lasgs~----Dg~I~iwd~~~~~~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iw 496 (609)
.+++..-.++.+++|+. |-.|.+||++..+ +++.. ...|...|++|.|+|..+++|++| +.||-|.+|
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q-----q~l~~~~eSH~DDVT~lrFHP~~pnlLlSG--SvDGLvnlf 193 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ-----QLLRQLNESHNDDVTQLRFHPSDPNLLLSG--SVDGLVNLF 193 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEecccc-----chhhhhhhhccCcceeEEecCCCCCeEEee--cccceEEee
Confidence 77777777888888864 6689999999873 33433 356999999999999999999997 599999999
Q ss_pred ECCCC----ceeEEEcCCCCeEEEEEcCCC-CeEEEEEecCCCeEEEEECCCCceEEEEeCC------------CCCEEE
Q psy4876 497 NVSSG----ACLDSIDTKSQVCALLWNSDY-KELVSAHGFAQNQLIIWKYPSLVKVAELHGH------------SARVLN 559 (609)
Q Consensus 497 d~~t~----~~~~~~~~~~~v~sl~~s~~g-~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h------------~~~V~~ 559 (609)
|+... .++.++.+.+.|..+.|..++ +.+.+.+ ......+|++..+.....+... ...+..
T Consensus 194 D~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT--H~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~ 271 (376)
T KOG1188|consen 194 DTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT--HMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN 271 (376)
T ss_pred ecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE--ccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee
Confidence 99744 245677778889999999876 4455543 6899999999887755444221 112222
Q ss_pred EEEeCCCCEEEEEEC-CCCEEEEEcC
Q psy4876 560 LAMSPDETTVLSAGA-DETLRLWKIF 584 (609)
Q Consensus 560 l~~spdg~~L~s~s~-Dg~I~iWdl~ 584 (609)
.....++.+.+.++. -+...++-+.
T Consensus 272 ~~~~~~~~~~~l~g~~~n~~~~~~~~ 297 (376)
T KOG1188|consen 272 EHSPGDKDTCALAGTDSNKGTIFPLV 297 (376)
T ss_pred cccCCCcceEEEeccccCceeEEEee
Confidence 222335556666665 5667666655
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.7e-16 Score=161.01 Aligned_cols=230 Identities=19% Similarity=0.289 Sum_probs=170.3
Q ss_pred EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEe
Q psy4876 285 VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQ-EGYMLGVGTSLGTVQLWD 363 (609)
Q Consensus 285 ~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~sp-dg~~Lasgs~dg~I~iwd 363 (609)
.+.+|.|-||++....... + +. +-.+.....|+++.|.| |...||+++.||.|+||.
T Consensus 599 ~g~gG~iai~el~~PGrLP-------D------------gv---~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr 656 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLP-------D------------GV---MPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWR 656 (1012)
T ss_pred cCCCceEEEEEcCCCCCCC-------c------------cc---ccccccCceeeecccCCCChHHeeecccCceEEEEE
Confidence 5668999999998731110 0 11 11222567899999999 568999999999999999
Q ss_pred CCCC-------eeEEEecCCCCceEEEEecC---CEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEE
Q psy4876 364 VSAK-------KKCRTMDGHDVRVGALAWNT---YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYL 433 (609)
Q Consensus 364 ~~~~-------~~~~~l~~h~~~V~~l~~~~---~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (609)
+..+ .....+..|...|+++.|++ +.|++++.|.+|.+||+.+. .....+.+|++.|.+++|||||+.+
T Consensus 657 ~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~-~~~~~l~gHtdqIf~~AWSpdGr~~ 735 (1012)
T KOG1445|consen 657 LTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA-KLYSRLVGHTDQIFGIAWSPDGRRI 735 (1012)
T ss_pred eccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh-hhhheeccCcCceeEEEECCCCcce
Confidence 8754 34567889999999999974 89999999999999999987 4677889999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCccceEeecCCc-ccEEEEEEcCCCCcEEEEEec-cCCCeEEEEECCCC--ceeEEE--
Q psy4876 434 ASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQ-AAVKAIAWCPWSPNVLASGGG-TADRHIYFWNVSSG--ACLDSI-- 507 (609)
Q Consensus 434 asgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~llasggG-s~Dg~I~iwd~~t~--~~~~~~-- 507 (609)
|+.+.||+|++|+.+.+. ++++.-.+.. ..--.|.|.-+|..++++|-. +..+.|.+||..+- ..+.+.
T Consensus 736 AtVcKDg~~rVy~Prs~e-----~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l 810 (1012)
T KOG1445|consen 736 ATVCKDGTLRVYEPRSRE-----QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL 810 (1012)
T ss_pred eeeecCceEEEeCCCCCC-----CccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeee
Confidence 999999999999998774 4444433222 122467888889888887631 12467889998743 344333
Q ss_pred cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q psy4876 508 DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS 543 (609)
Q Consensus 508 ~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~ 543 (609)
+....+.--.|.+|...++.. |-.|..|.+|.+-.
T Consensus 811 Dvaps~LvP~YD~Ds~~lflt-GKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 811 DVAPSPLVPHYDYDSNVLFLT-GKGDRFVNMYEVIY 845 (1012)
T ss_pred cccCccccccccCCCceEEEe-cCCCceEEEEEecC
Confidence 333344444566676666554 66799999998743
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-14 Score=156.22 Aligned_cols=281 Identities=16% Similarity=0.233 Sum_probs=194.0
Q ss_pred EEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeee--eecCCCCeEEEEEccCCCE
Q psy4876 273 NLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLM--DLEGNENVCSVAWIQEGYM 349 (609)
Q Consensus 273 ~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~h~~~V~~v~~spdg~~ 349 (609)
.+|..++.+ +..+..+..+++|+...+. ...... ...|.-.+++++++|++++
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~------------------------~~~~~~~~~~~Htf~~t~~~~spn~~~ 219 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHT------------------------KHTSSRDITVHHTFNITCVALSPNERY 219 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccc------------------------eeeccchhhhhhcccceeEEeccccce
Confidence 346677765 6668889999999998721 111111 2226677999999999999
Q ss_pred EEEEeCCCeEEEEeCCC----CeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 350 LGVGTSLGTVQLWDVSA----KKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~----~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
+|+|..||.|.+|.--. ....+.+.-|...|.+++| +|.+|++|+..|.+.+|.+.++. .+.+..-.+.|..
T Consensus 220 ~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~ 297 (792)
T KOG1963|consen 220 LAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILH 297 (792)
T ss_pred EEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEE
Confidence 99999999999996432 2345677789999999999 79999999999999999999874 5567777899999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee--------cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEE
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL--------SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYF 495 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~--------~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~i 495 (609)
+.++||+.+.+....|+.|.+....+.... ..+..+ ....+-.+.++++|.-+.++..| ..++|.+
T Consensus 298 i~vS~ds~~~sl~~~DNqI~li~~~dl~~k---~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~---~~g~vQ~ 371 (792)
T KOG1963|consen 298 IVVSPDSDLYSLVLEDNQIHLIKASDLEIK---STISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG---HPGHVQF 371 (792)
T ss_pred EEEcCCCCeEEEEecCceEEEEeccchhhh---hhccCccCCCccccccccccceeEEEcCCCCceeecC---CCceEEE
Confidence 999999999999999999999987554211 111111 11244567788888444444443 7888999
Q ss_pred EECCCCceeEEEcC--------C----CCeEEEEEcCCCCeEEE------------------------------------
Q psy4876 496 WNVSSGACLDSIDT--------K----SQVCALLWNSDYKELVS------------------------------------ 527 (609)
Q Consensus 496 wd~~t~~~~~~~~~--------~----~~v~sl~~s~~g~~l~~------------------------------------ 527 (609)
||+.+.+.+..+.. . -.++.++.+..|.++++
T Consensus 372 ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~ 451 (792)
T KOG1963|consen 372 YDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKIN 451 (792)
T ss_pred EeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEe
Confidence 98876544433210 0 01222222222222211
Q ss_pred ---------------------EEecCCCeEEEEECCC----------CceEEEEeCCCCCEEEEEEeCCCCEEEEEECCC
Q psy4876 528 ---------------------AHGFAQNQLIIWKYPS----------LVKVAELHGHSARVLNLAMSPDETTVLSAGADE 576 (609)
Q Consensus 528 ---------------------~sG~~dg~I~Iwd~~~----------~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg 576 (609)
++.+.||.++||-+.. +.+...-.-|..+++.++|+.||. +++++.|+
T Consensus 452 ~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~ 530 (792)
T KOG1963|consen 452 NPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDD 530 (792)
T ss_pred cCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc-EEEEecCC
Confidence 1133788899997722 122222223778899999999995 66677899
Q ss_pred CEEEEEcCCC
Q psy4876 577 TLRLWKIFEK 586 (609)
Q Consensus 577 ~I~iWdl~~~ 586 (609)
+|.+||..+.
T Consensus 531 ~Itiwd~~~~ 540 (792)
T KOG1963|consen 531 TITIWDYDTK 540 (792)
T ss_pred EEEEecCCCh
Confidence 9999999884
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-13 Score=135.39 Aligned_cols=274 Identities=15% Similarity=0.205 Sum_probs=200.0
Q ss_pred EEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEE
Q psy4876 272 LNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYML 350 (609)
Q Consensus 272 v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~L 350 (609)
++.+.|+.+. +|++|.....++++.+.. ++ ..........|..+-|+. .++
T Consensus 8 i~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~------------------------~k--~~~~~~~~~~IvEmLFSS--SLv 59 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDGYKIFSCSPF------------------------EK--CFSKDTEGVSIVEMLFSS--SLV 59 (391)
T ss_pred eeeeeeccceeEEEccCCCceeEEecCch------------------------HH--hhcccCCCeEEEEeeccc--cee
Confidence 4556688885 888888888889988761 11 111111344566666664 466
Q ss_pred EEEeCC--CeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEc---cCCCCeEEEE
Q psy4876 351 GVGTSL--GTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQ---NHTQEVCGLK 425 (609)
Q Consensus 351 asgs~d--g~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~ 425 (609)
|..+.+ ..++++++..+..+..+. ....|.++.+|.+.|+++-.+. |+|||+++.. .+.++. .+...++++.
T Consensus 60 aiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~Mk-lLhTI~t~~~n~~gl~AlS 136 (391)
T KOG2110|consen 60 AIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMK-LLHTIETTPPNPKGLCALS 136 (391)
T ss_pred EEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccceEEEEEccc-EEEEecccce-eehhhhccCCCccceEeec
Confidence 665544 358999998888777776 6678999999988887776654 9999999873 555543 4566688888
Q ss_pred EccCCCEEEEEe--CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce
Q psy4876 426 WSPDGRYLASGG--NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC 503 (609)
Q Consensus 426 ~spdg~~lasgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~ 503 (609)
+++.+.++|.-+ ..|.|.|||+.+. +++..+..|.+.+-+++|+++| .++|+++ .....||||.+.+|+.
T Consensus 137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl------~~v~~I~aH~~~lAalafs~~G-~llATAS-eKGTVIRVf~v~~G~k 208 (391)
T KOG2110|consen 137 PNNANCYLAYPGSTTSGDVVLFDTINL------QPVNTINAHKGPLAALAFSPDG-TLLATAS-EKGTVIRVFSVPEGQK 208 (391)
T ss_pred cCCCCceEEecCCCCCceEEEEEcccc------eeeeEEEecCCceeEEEECCCC-CEEEEec-cCceEEEEEEcCCccE
Confidence 888888998743 3689999999988 8889999999999999999998 6888884 2344589999999999
Q ss_pred eEEEcCCC---CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-----------------------------------
Q psy4876 504 LDSIDTKS---QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV----------------------------------- 545 (609)
Q Consensus 504 ~~~~~~~~---~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~----------------------------------- 545 (609)
+.++.-+. .|.+++|++++.+|.+++ ..++|+||.+..-.
T Consensus 209 l~eFRRG~~~~~IySL~Fs~ds~~L~~sS--~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~ 286 (391)
T KOG2110|consen 209 LYEFRRGTYPVSIYSLSFSPDSQFLAASS--NTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQ 286 (391)
T ss_pred eeeeeCCceeeEEEEEEECCCCCeEEEec--CCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhh
Confidence 99997653 789999999999998854 78999999874210
Q ss_pred --eEEEEeCCCCCE-EEEEEe--CCCCEEEEEECCCCEEEEEcCCC
Q psy4876 546 --KVAELHGHSARV-LNLAMS--PDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 546 --~~~~l~~h~~~V-~~l~~s--pdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
.....+...+.. ..+.+. +....+..++.||.+..|.+...
T Consensus 287 ~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 287 SRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred ccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 001111111111 223343 47789999999999999998753
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-14 Score=139.22 Aligned_cols=237 Identities=14% Similarity=0.238 Sum_probs=182.1
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCe--EEEEEcCCCCeeEEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGN--IVHHDVRSRDHKVAL 413 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~--I~iwd~~~~~~~~~~ 413 (609)
..+..+.|+.+...|.+|+.|| .++|..+..............|..+-|+..+++..+.+.. ++++++.... .+..
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~-~ICe 83 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKT-TICE 83 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCc-eEEE
Confidence 3456677999999999999998 7888877655433333445567777788888887776543 8888888764 3333
Q ss_pred EccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC---CcccEEEEEEcCCCCcEEEEEeccCC
Q psy4876 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR---HQAAVKAIAWCPWSPNVLASGGGTAD 490 (609)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~---h~~~V~~l~~sp~~~~llasggGs~D 490 (609)
+. ...+|.++.++. +.|+++-.+ .|+|||+++. +.++++.. +...+.++++++.+.++..-+. ...
T Consensus 84 ~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~M------klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s-~t~ 152 (391)
T KOG2110|consen 84 IF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDM------KLLHTIETTPPNPKGLCALSPNNANCYLAYPGS-TTS 152 (391)
T ss_pred Ee-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccc------eeehhhhccCCCccceEeeccCCCCceEEecCC-CCC
Confidence 22 456788888875 456666654 4999999998 66666643 4556777777776644444443 567
Q ss_pred CeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCe-EEEEECCCCceEEEEeCC--CCCEEEEEEeCCC
Q psy4876 491 RHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQ-LIIWKYPSLVKVAELHGH--SARVLNLAMSPDE 566 (609)
Q Consensus 491 g~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~-I~Iwd~~~~~~~~~l~~h--~~~V~~l~~spdg 566 (609)
|.|.+||+.+-+.+..+..| +.+.+++|+++|.+|++++ +.|+ |+||.+++|+++.+|+.- ...|.+++|+||+
T Consensus 153 GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATAS--eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATAS--EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS 230 (391)
T ss_pred ceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEec--cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC
Confidence 99999999999999999865 6999999999999999975 5665 899999999999999643 3468999999999
Q ss_pred CEEEEEECCCCEEEEEcCCCc
Q psy4876 567 TTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 567 ~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
++|++.|..++|.||++....
T Consensus 231 ~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 231 QFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CeEEEecCCCeEEEEEecccc
Confidence 999999999999999998766
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.4e-15 Score=159.17 Aligned_cols=212 Identities=15% Similarity=0.126 Sum_probs=149.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeCC---CeEEEEeCCCCee--EEEecCCCCceEEEEe--cCCEEEEE-ecCCeEEEE--E
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSL---GTVQLWDVSAKKK--CRTMDGHDVRVGALAW--NTYILSSG-SRCGNIVHH--D 403 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~d---g~I~iwd~~~~~~--~~~l~~h~~~V~~l~~--~~~~L~sg-s~dg~I~iw--d 403 (609)
+...+.+++|+|||+.|+.++.+ ..|.+||+.+++. +..+.+| ...++| +++.|+.+ +.+|.+.|| |
T Consensus 202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 278 (429)
T PRK01742 202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMG 278 (429)
T ss_pred CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEE
Confidence 66789999999999999887653 3699999988753 3334443 345788 57777665 467865555 5
Q ss_pred cCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEE
Q psy4876 404 VRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 404 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 482 (609)
+.++ ....+..+...+....|+|||+.|+.++ .++...||++.... .....+ .+.. ..+.|+|+|..++
T Consensus 279 ~~~~--~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~-----~~~~~l-~~~~--~~~~~SpDG~~ia 348 (429)
T PRK01742 279 ANGG--TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG-----GGASLV-GGRG--YSAQISADGKTLV 348 (429)
T ss_pred CCCC--CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC-----CCeEEe-cCCC--CCccCCCCCCEEE
Confidence 5544 3455666777888999999999877665 56788888765431 112222 3333 4578999998766
Q ss_pred EEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC--CCCceEEEEeCCCCCEEEE
Q psy4876 483 ASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKY--PSLVKVAELHGHSARVLNL 560 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~--~~~~~~~~l~~h~~~V~~l 560 (609)
+++ .+ .+.+||+.+++....... .....+.|+|+|+.+++++ .++.+.+|++ .++..+..+.+|.+.+..+
T Consensus 349 ~~~---~~-~i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s--~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p 421 (429)
T PRK01742 349 MIN---GD-NVVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSS--TQGLGKVLQLVSADGRFKARLPGSDGQVKFP 421 (429)
T ss_pred EEc---CC-CEEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEE--cCCCceEEEEEECCCCceEEccCCCCCCCCc
Confidence 654 24 466699998876533222 2346788999999999865 5777777765 4677888888898889999
Q ss_pred EEeCC
Q psy4876 561 AMSPD 565 (609)
Q Consensus 561 ~~spd 565 (609)
+|+|-
T Consensus 422 ~wsp~ 426 (429)
T PRK01742 422 AWSPY 426 (429)
T ss_pred ccCCC
Confidence 99984
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-14 Score=159.65 Aligned_cols=298 Identities=18% Similarity=0.229 Sum_probs=205.3
Q ss_pred CccccccCCccCCceeEEEEEecCCC---eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeee
Q psy4876 256 TADRILDAPEIQNDYYLNLIDWSHFN---VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL 332 (609)
Q Consensus 256 ~p~~il~ap~~~~~~~v~~l~wsp~~---lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (609)
.|..++-|+-....-.++.++-+++. +++++.||+|++|+...-.. +.+......++
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~--------------------~~~s~rS~lty 1094 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEG--------------------EGGSARSELTY 1094 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhc--------------------CcceeeeeEEE
Confidence 34455666555555567778877754 77799999999999876110 11233344455
Q ss_pred c-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC-------eeEEEecCC--CCceEEEEe---cC-CEEEEEecCCe
Q psy4876 333 E-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAK-------KKCRTMDGH--DVRVGALAW---NT-YILSSGSRCGN 398 (609)
Q Consensus 333 ~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~-------~~~~~l~~h--~~~V~~l~~---~~-~~L~sgs~dg~ 398 (609)
. ....+.++...+.|+.+|+|+.||.|++.+++.. .+.+....+ ..-|..-+| .. ..|+.+...+.
T Consensus 1095 s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~ 1174 (1431)
T KOG1240|consen 1095 SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSR 1174 (1431)
T ss_pred eccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccc
Confidence 4 6788999999999999999999999999998752 122222222 223334444 23 48888899999
Q ss_pred EEEEEcCCCCeeEEEEc--cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec-CCcccEEEEEEc
Q psy4876 399 IVHHDVRSRDHKVALLQ--NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS-RHQAAVKAIAWC 475 (609)
Q Consensus 399 I~iwd~~~~~~~~~~~~--~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~l~~s 475 (609)
|..||++... ....++ ...+.|++++.+|.+.++++|+..|.+.+||++=+ .++..+. .+..++..+..|
T Consensus 1175 iv~~D~r~~~-~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~------~~i~sw~~P~~~~i~~v~~~ 1247 (1431)
T KOG1240|consen 1175 IVSWDTRMRH-DAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR------VPILSWEHPARAPIRHVWLC 1247 (1431)
T ss_pred eEEecchhhh-hHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC------ceeecccCcccCCcceEEee
Confidence 9999999763 333332 33478999999999999999999999999999976 4554443 345788888888
Q ss_pred CCCC--cEEEEEeccCCCeEEEEECCCCceeEEEcCCCC--------------------eEEEEEcCCCCeEEEEEecCC
Q psy4876 476 PWSP--NVLASGGGTADRHIYFWNVSSGACLDSIDTKSQ--------------------VCALLWNSDYKELVSAHGFAQ 533 (609)
Q Consensus 476 p~~~--~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~--------------------v~sl~~s~~g~~l~~~sG~~d 533 (609)
|..+ ...++++-+..+.|.+|++.+|.+...+-.... .....+...+..+++ |+.|
T Consensus 1248 ~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~lt--ggsd 1325 (1431)
T KOG1240|consen 1248 PTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLT--GGSD 1325 (1431)
T ss_pred ccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeee--cCCc
Confidence 8655 566665423789999999999987776643311 112233333445555 5689
Q ss_pred CeEEEEECCCCce------------------------------------------------EEEE--------eCCCCCE
Q psy4876 534 NQLIIWKYPSLVK------------------------------------------------VAEL--------HGHSARV 557 (609)
Q Consensus 534 g~I~Iwd~~~~~~------------------------------------------------~~~l--------~~h~~~V 557 (609)
..|+.||....+. ...+ ..|.+.|
T Consensus 1326 ~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~I 1405 (1431)
T KOG1240|consen 1326 MKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPI 1405 (1431)
T ss_pred cceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchh
Confidence 9999999742100 0000 1467789
Q ss_pred EEEEEeCC-CCEEEEEECCCCEEEEE
Q psy4876 558 LNLAMSPD-ETTVLSAGADETLRLWK 582 (609)
Q Consensus 558 ~~l~~spd-g~~L~s~s~Dg~I~iWd 582 (609)
+++++-.. ..+|++++.||.|+||.
T Consensus 1406 tdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1406 TDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhhhhccCccEEEEecCCCeeeecC
Confidence 99887654 45899999999999994
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.1e-15 Score=143.88 Aligned_cols=234 Identities=15% Similarity=0.258 Sum_probs=172.6
Q ss_pred EEEecCC----C--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 274 LIDWSHF----N--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 274 ~l~wsp~----~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
.++|+-+ + ++++|.-|.|+|.|+.+ +.+.. .+. |...|..+.+.|+
T Consensus 94 tcsw~yd~~~~~p~la~~G~~GvIrVid~~~-------------------------~~~~~--~~~ghG~sINeik~~p~ 146 (385)
T KOG1034|consen 94 TCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-------------------------GQCSK--NYRGHGGSINEIKFHPD 146 (385)
T ss_pred EEEEEecCCCCCeeEEeecceeEEEEEecch-------------------------hhhcc--ceeccCccchhhhcCCC
Confidence 4677653 2 55677889999999987 44322 333 8999999999998
Q ss_pred C-CEEEEEeCCCeEEEEeCCCCeeEEEec---CCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe-----e-----
Q psy4876 347 G-YMLGVGTSLGTVQLWDVSAKKKCRTMD---GHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDH-----K----- 410 (609)
Q Consensus 347 g-~~Lasgs~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~-----~----- 410 (609)
. ++|++++.|..|++|++++..++..+. +|...|.++.| ++.+|++++.|.+|++|++...+- .
T Consensus 147 ~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~ 226 (385)
T KOG1034|consen 147 RPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYS 226 (385)
T ss_pred CCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence 6 899999999999999999999998875 69999999999 578999999999999999983210 0
Q ss_pred -----------------EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CCC-------CCCccceEeecCC
Q psy4876 411 -----------------VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVP-GQH-------TFSTQPIHSLSRH 465 (609)
Q Consensus 411 -----------------~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~-~~~-------~~~~~~~~~~~~h 465 (609)
..+-..|...|-|+.|- |+++++-+-++.|..|.... .+. ......+..+.-.
T Consensus 227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~ 304 (385)
T KOG1034|consen 227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP 304 (385)
T ss_pred CCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC
Confidence 00223467777777776 57899988899999998722 111 0011223344434
Q ss_pred cccEEE--EEEcCCCCcEEEEEeccCCCeEEEEECCCCcee--EEEc---CCCCeEEEEEcCCCCeEEEEEecCCCeEEE
Q psy4876 466 QAAVKA--IAWCPWSPNVLASGGGTADRHIYFWNVSSGACL--DSID---TKSQVCALLWNSDYKELVSAHGFAQNQLII 538 (609)
Q Consensus 466 ~~~V~~--l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~--~~~~---~~~~v~sl~~s~~g~~l~~~sG~~dg~I~I 538 (609)
...|.- .+|.|.++ +||.|+ ..|.|++||++..+.. .++. ....|...+|+.|+..|+..+ +|+.|.-
T Consensus 305 ~c~iWfirf~~d~~~~-~la~gn--q~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc--dd~~Vwr 379 (385)
T KOG1034|consen 305 MCDIWFIRFAFDPWQK-MLALGN--QSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC--DDGTVWR 379 (385)
T ss_pred ccceEEEEEeecHHHH-HHhhcc--CCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEe--CCCcEEE
Confidence 444444 45667664 566653 8999999999976652 2222 235799999999999999976 8999999
Q ss_pred EEC
Q psy4876 539 WKY 541 (609)
Q Consensus 539 wd~ 541 (609)
||.
T Consensus 380 wdr 382 (385)
T KOG1034|consen 380 WDR 382 (385)
T ss_pred EEe
Confidence 985
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-14 Score=142.28 Aligned_cols=246 Identities=14% Similarity=0.231 Sum_probs=181.8
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC------CeeEEEecC-CCCceEEEEec--CCEEEEEecCCeEEEEEc
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSA------KKKCRTMDG-HDVRVGALAWN--TYILSSGSRCGNIVHHDV 404 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~------~~~~~~l~~-h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~ 404 (609)
|.+.|.++.|+.++++||+|+.|..++||+++. .+.+..+.. |...|.|++|+ ...|++|+.+|+|..+|+
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi 134 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI 134 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence 899999999999999999999999999999863 355555544 55899999995 578999999999999999
Q ss_pred CCCCeeEEEEc--cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEE
Q psy4876 405 RSRDHKVALLQ--NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 405 ~~~~~~~~~~~--~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 482 (609)
.+.+ .+..+. ...+.|..+..+|-.+.|++.+.++.|.+||.+..... .....+.........+.|+|..+.||
T Consensus 135 Et~q-si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~---~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 135 ETKQ-SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP---ISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred ccce-eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC---CceeeecCCCccceeeeecCCCceeE
Confidence 9874 444433 22358999999999899999999999999999876321 11222333456678899999999999
Q ss_pred EEEeccCCCeEEEEECCCCce-eEEE------cC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCC
Q psy4876 483 ASGGGTADRHIYFWNVSSGAC-LDSI------DT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHS 554 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~~-~~~~------~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~ 554 (609)
++.. ..+-+-+||++.... +... .. .....++.|+|.|..+++.- ....-.+||+-+..+...-..|.
T Consensus 211 ~~~~--~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR--R~~~P~~~D~~S~R~~V~k~D~N 286 (609)
T KOG4227|consen 211 LVNS--ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR--RGKCPLYFDFISQRCFVLKSDHN 286 (609)
T ss_pred Eecc--ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh--ccCCCEEeeeecccceeEeccCC
Confidence 9874 778899999985432 1111 11 12346789999999988753 33344567776543322212232
Q ss_pred -------CCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 555 -------ARVLNLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 555 -------~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
..+.+++|.-|- .+++|+.+-.|.+|.+-....
T Consensus 287 ~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~d 326 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRAND 326 (609)
T ss_pred CCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCcc
Confidence 346778887655 499999999999999865443
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-13 Score=135.97 Aligned_cols=277 Identities=17% Similarity=0.270 Sum_probs=182.9
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccC
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQE 346 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spd 346 (609)
...+..++|++.- ++.++.|..|++||-.. .....+.. .....|+|++|-|.
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-------------------------t~pt~Lks-~sQrnvtclawRPl 151 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-------------------------TCPTKLKS-VSQRNVTCLAWRPL 151 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-------------------------CCCceecc-hhhcceeEEEeccC
Confidence 3457889999962 66688899999999765 22222222 24578999999997
Q ss_pred C-CEEEEEeCCCeEEEEeCCCC----eeE----------EEecCCCCceEEEEe--cCCEEEEEec-CCeEEEEEcCCCC
Q psy4876 347 G-YMLGVGTSLGTVQLWDVSAK----KKC----------RTMDGHDVRVGALAW--NTYILSSGSR-CGNIVHHDVRSRD 408 (609)
Q Consensus 347 g-~~Lasgs~dg~I~iwd~~~~----~~~----------~~l~~h~~~V~~l~~--~~~~L~sgs~-dg~I~iwd~~~~~ 408 (609)
+ .-|++|+..| |.||..... ..+ ....+| ..|+++.| +|..+++++- |..|.|||.+++.
T Consensus 152 saselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~ 229 (445)
T KOG2139|consen 152 SASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ 229 (445)
T ss_pred Ccceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC
Confidence 6 7888898855 999987532 111 122334 68999999 5778887774 6789999999874
Q ss_pred eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEecc
Q psy4876 409 HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGT 488 (609)
Q Consensus 409 ~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs 488 (609)
.+......-+.+.-+.|||||.+|+.++-|+..++|+.... .......-..+.|...+|+|.|..||.+..
T Consensus 230 -~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~------wt~erw~lgsgrvqtacWspcGsfLLf~~s-- 300 (445)
T KOG2139|consen 230 -KIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS------WTKERWILGSGRVQTACWSPCGSFLLFACS-- 300 (445)
T ss_pred -cccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccc------ceecceeccCCceeeeeecCCCCEEEEEEc--
Confidence 33333334567888999999999999999999999976544 112222234558999999999999998864
Q ss_pred CCCeEEEEECCC----Cc-----------eeEEE------cC----CCCeEEEEEcCCCCeEEEEEecCC------CeEE
Q psy4876 489 ADRHIYFWNVSS----GA-----------CLDSI------DT----KSQVCALLWNSDYKELVSAHGFAQ------NQLI 537 (609)
Q Consensus 489 ~Dg~I~iwd~~t----~~-----------~~~~~------~~----~~~v~sl~~s~~g~~l~~~sG~~d------g~I~ 537 (609)
+.-++|.+.- +. .+..+ .. .+.+.+++|.|.|.+|++..-..+ ..|.
T Consensus 301 --gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~ 378 (445)
T KOG2139|consen 301 --GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHIS 378 (445)
T ss_pred --CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhh
Confidence 3333333321 10 00011 11 356889999999999998642222 2366
Q ss_pred EEECCCCceEEEE-eCC--CCCEEEEEEeC---CCCEEEEEECCCCEEEEEcC
Q psy4876 538 IWKYPSLVKVAEL-HGH--SARVLNLAMSP---DETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 538 Iwd~~~~~~~~~l-~~h--~~~V~~l~~sp---dg~~L~s~s~Dg~I~iWdl~ 584 (609)
+||....-.+.-. .+. ...-..|+|+| +|.+|..+=.-|.+.-|++.
T Consensus 379 ~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 379 RFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred hhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 6776544333222 111 12245567776 56777777777888777654
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-15 Score=153.82 Aligned_cols=256 Identities=16% Similarity=0.178 Sum_probs=181.5
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...+..+++++.. +++++.||.|.+|+++..... ....++++.++. |.++|.|++..+
T Consensus 294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s-------------------~~~~~epi~tfraH~gPVl~v~v~~ 354 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS-------------------AEKDVEPILTFRAHEGPVLCVVVPS 354 (577)
T ss_pred hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc-------------------cccceeeeEEEecccCceEEEEecC
Confidence 3457778888763 888999999999999441111 116788999999 999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----------eeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAK----------KKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~----------~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~ 413 (609)
++..+++|+.||+|+.|++... .....+.||.+.|+.++++ ...|++++.||+++.|+......+...
T Consensus 355 n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~ 434 (577)
T KOG0642|consen 355 NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFG 434 (577)
T ss_pred CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccC
Confidence 9999999999999999965411 2456788999999999995 578999999999999998875431111
Q ss_pred EccCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-------CcccEEEEEEcCCCCcEEEEE
Q psy4876 414 LQNHTQEVCGLKWSPDG-RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-------HQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 414 ~~~h~~~V~~l~~spdg-~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-------h~~~V~~l~~sp~~~~llasg 485 (609)
.....+.-.++.+-... .+.++...-+.--+++.... ..+..+.. ....+..+.++|..+ +.+++
T Consensus 435 ~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~------s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~ 507 (577)
T KOG0642|consen 435 EPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV------SDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTA 507 (577)
T ss_pred CccccCCcceEeeccchhHhhhhhcccccccchhhhhh------hheeeccccCCCcccccCccceEEecCCCC-eeEec
Confidence 11122233445553322 12222222222233333332 12222211 123467888999885 55554
Q ss_pred eccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCC
Q psy4876 486 GGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHS 554 (609)
Q Consensus 486 gGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~ 554 (609)
. .|+.|+++|..+++.+.....+ ..++++++.|+|.+|++ |..|+.+++|.+....++.....|.
T Consensus 508 h--ed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s--~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 508 H--EDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMS--GSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred c--cCCceecccccccccchheeeccceecceeecCCCceEEe--ecCCceeehhhccchheeecccccc
Confidence 3 8999999999999999877655 58999999999999999 6699999999998877777666654
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-13 Score=125.90 Aligned_cols=271 Identities=15% Similarity=0.166 Sum_probs=180.8
Q ss_pred EEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEE
Q psy4876 274 LIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYML 350 (609)
Q Consensus 274 ~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~L 350 (609)
.-+|+|.+ ++++..+|.|.+..+..... ......++. .+.... |+++|..++|. ..+|
T Consensus 15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s----------------~sa~~~gk~-~iv~eqahdgpiy~~~f~--d~~L 75 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDS----------------GSAEPPGKL-KIVPEQAHDGPIYYLAFH--DDFL 75 (325)
T ss_pred HHhhCCcceEEEEecCCCeEEEEEehhhhc----------------cccCCCCCc-ceeeccccCCCeeeeeee--hhhe
Confidence 34677764 67788899999999876211 001111332 233334 99999999998 3466
Q ss_pred EEEeCCCeEEEEeCCCCee------EE--EecCCC-----CceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEc
Q psy4876 351 GVGTSLGTVQLWDVSAKKK------CR--TMDGHD-----VRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQ 415 (609)
Q Consensus 351 asgs~dg~I~iwd~~~~~~------~~--~l~~h~-----~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~ 415 (609)
++|+. |.|+-|....... +- ....|. ..|.++..+ .+-++.++.|+.++-||++++ .....++
T Consensus 76 ls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G-~i~r~~r 153 (325)
T KOG0649|consen 76 LSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG-RIQREYR 153 (325)
T ss_pred eeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC-EEEEEEc
Confidence 66654 9999987653211 10 111122 346666664 344555558999999999998 5888999
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec---------CC-cccEEEEEEcCCCCcEEEEE
Q psy4876 416 NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS---------RH-QAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 416 ~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~---------~h-~~~V~~l~~sp~~~~llasg 485 (609)
+|++.|.+++--.....+++|++||+++|||.++++ .+..+. .| ...|.+++-+. ..+++|
T Consensus 154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k------~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCG 224 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQK------HVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCG 224 (325)
T ss_pred CCcceeeeeeecccCcceeecCCCccEEEEeccccc------eeEEeccccChhhcCcccCceeEEEeccC---ceEEec
Confidence 999999999985555579999999999999999984 333332 22 23566776644 356666
Q ss_pred eccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCC
Q psy4876 486 GGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPD 565 (609)
Q Consensus 486 gGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spd 565 (609)
+ ...+.+|+++..++...+.....+..+.|..+ .+++ ++..+.|.-|.+. |.....+.......+...|+-.
T Consensus 225 g---Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~--~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~ 296 (325)
T KOG0649|consen 225 G---GPKLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLI--GGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTS 296 (325)
T ss_pred C---CCceeEEeccCCCceEEEecccceeEeeeecc--eEEE--eccccceeeeeec-cEEEEeccCCccceeeecccCC
Confidence 4 68899999999999999999999999988665 3444 3367788888864 3333344443344555555443
Q ss_pred C-CEEEEEECCCCEEEEE
Q psy4876 566 E-TTVLSAGADETLRLWK 582 (609)
Q Consensus 566 g-~~L~s~s~Dg~I~iWd 582 (609)
- ++|-.++..+.+.|+.
T Consensus 297 p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 297 PIKFISIAGFSNKLHILK 314 (325)
T ss_pred ceEEEEecccceeeeeee
Confidence 3 3455566666676654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-13 Score=147.08 Aligned_cols=220 Identities=14% Similarity=0.103 Sum_probs=150.1
Q ss_pred CCCCeEEEEEccCCCEEEEEeC---CCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEE-ecCC--eEEEEEcC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTS---LGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSG-SRCG--NIVHHDVR 405 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~---dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sg-s~dg--~I~iwd~~ 405 (609)
+...+.+.+|+|||+.||..+. +..|.+|++.+++... +......+..+.| ++..|+.. +.+| .|++||+.
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 5678999999999998887542 3579999998875433 2223333456778 57666644 4455 58899998
Q ss_pred CCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCC-C--cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEE
Q psy4876 406 SRDHKVALLQNHTQEVCGLKWSPDGRYLASGGND-N--LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 406 ~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~D-g--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 482 (609)
++. ...+..+...+....|+|||+.|+..+.+ + .|+++|+.++ ....+..+........|+|+|..++
T Consensus 276 tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g-------~~~~lt~~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 276 SGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG-------APQRITWEGSQNQDADVSSDGKFMV 346 (429)
T ss_pred CCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-------CeEEeecCCCCccCEEECCCCCEEE
Confidence 763 34444455677889999999998877764 3 4555577655 2233333444566789999998877
Q ss_pred EEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecC-CCeEEEEECCCCceEEEEeCCCCCEEEEE
Q psy4876 483 ASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFA-QNQLIIWKYPSLVKVAELHGHSARVLNLA 561 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~-dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~ 561 (609)
+++.......|.+||+.+++.. .+..........|+|||+.++.++... ...+.++++ ++.....+.+|.+.+...+
T Consensus 347 ~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~ 424 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPA 424 (429)
T ss_pred EEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcc
Confidence 7653222356899999888644 333333445788999999999876311 123777787 4555667778888899999
Q ss_pred EeCC
Q psy4876 562 MSPD 565 (609)
Q Consensus 562 ~spd 565 (609)
|+|-
T Consensus 425 Wsp~ 428 (429)
T PRK03629 425 WSPY 428 (429)
T ss_pred cCCC
Confidence 9873
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=6e-15 Score=151.50 Aligned_cols=217 Identities=18% Similarity=0.273 Sum_probs=166.9
Q ss_pred eeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEe-cCCCCceEEEEe----cCCEEEEEecCCeEEEE
Q psy4876 329 LMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTM-DGHDVRVGALAW----NTYILSSGSRCGNIVHH 402 (609)
Q Consensus 329 l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~----~~~~L~sgs~dg~I~iw 402 (609)
-.++. |.+.|.|++|+.+|.+|++|+.|-.+.|||.-..+.+..+ .+|...|.++.| +..++++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 34556 9999999999999999999999999999999888877766 489999999999 57899999999999999
Q ss_pred EcCC---------CCeeEEEEccCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCCCCCcc----ceEeecCCccc
Q psy4876 403 DVRS---------RDHKVALLQNHTQEVCGLKWSPDG-RYLASGGNDNLLNIWSGVPGQHTFSTQ----PIHSLSRHQAA 468 (609)
Q Consensus 403 d~~~---------~~~~~~~~~~h~~~V~~l~~spdg-~~lasgs~Dg~I~iwd~~~~~~~~~~~----~~~~~~~h~~~ 468 (609)
|+.. .......+..|...|..|+..|++ ..|.++++||+|+-+|++......... .+..+....-.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9985 223445567899999999999988 789999999999999999753211111 11112222345
Q ss_pred EEEEEEcCCCCcEEEEEeccCCCeEEEEECCC--------Cc----------eeEEEcCC-------------CCeEEEE
Q psy4876 469 VKAIAWCPWSPNVLASGGGTADRHIYFWNVSS--------GA----------CLDSIDTK-------------SQVCALL 517 (609)
Q Consensus 469 V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t--------~~----------~~~~~~~~-------------~~v~sl~ 517 (609)
.+++..+|..+++|++|| .|-..++||.+. +. |+..+... ..++-+.
T Consensus 203 lk~ltisp~rp~~laVGg--sdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGG--SDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred eeeeeecCCCCceEEecC--CCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 689999999999999986 899999999431 11 23322110 1256789
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCCCceEEE
Q psy4876 518 WNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE 549 (609)
Q Consensus 518 ~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~ 549 (609)
|+|+|.+|++.- ....|++||+..++....
T Consensus 281 fnpNGtElLvs~--~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 281 FNPNGTELLVSW--GGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred ECCCCcEEEEee--CCeEEEEEeecCCCCcee
Confidence 999999999854 467899999987765443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.8e-13 Score=139.08 Aligned_cols=239 Identities=11% Similarity=0.062 Sum_probs=158.2
Q ss_pred EEEEecCCC-eE-EEE-cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCE
Q psy4876 273 NLIDWSHFN-VL-AVA-LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYM 349 (609)
Q Consensus 273 ~~l~wsp~~-ll-a~s-~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~ 349 (609)
..++++|++ .| +++ .++.|.+|++... +.+..+......+....++|+|+|++
T Consensus 38 ~~l~~spd~~~lyv~~~~~~~i~~~~~~~~------------------------g~l~~~~~~~~~~~p~~i~~~~~g~~ 93 (330)
T PRK11028 38 QPMVISPDKRHLYVGVRPEFRVLSYRIADD------------------------GALTFAAESPLPGSPTHISTDHQGRF 93 (330)
T ss_pred ccEEECCCCCEEEEEECCCCcEEEEEECCC------------------------CceEEeeeecCCCCceEEEECCCCCE
Confidence 357889986 33 333 4689999998631 44444444433446788999999998
Q ss_pred EEEEeC-CCeEEEEeCCCC----eeEEEecCCCCceEEEEe--cCCEEE-EEecCCeEEEEEcCCCCeeE------EEEc
Q psy4876 350 LGVGTS-LGTVQLWDVSAK----KKCRTMDGHDVRVGALAW--NTYILS-SGSRCGNIVHHDVRSRDHKV------ALLQ 415 (609)
Q Consensus 350 Lasgs~-dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~--~~~~L~-sgs~dg~I~iwd~~~~~~~~------~~~~ 415 (609)
|++++. ++.|.+|++++. +.+..+. +.....++++ ++++++ +...++.|.+||+.+..... ....
T Consensus 94 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~ 172 (330)
T PRK11028 94 LFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV 172 (330)
T ss_pred EEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC
Confidence 888764 789999999743 2233333 2234555667 456665 45567999999998643211 1111
Q ss_pred cCCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCCCCCCccceEeecC------CcccEEEEEEcCCCCcEEEEEecc
Q psy4876 416 NHTQEVCGLKWSPDGRYLASGGN-DNLLNIWSGVPGQHTFSTQPIHSLSR------HQAAVKAIAWCPWSPNVLASGGGT 488 (609)
Q Consensus 416 ~h~~~V~~l~~spdg~~lasgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~------h~~~V~~l~~sp~~~~llasggGs 488 (609)
.......++|+|+|++++++.. ++.|.+||+...... .+.+..+.. +......+.++|+++.++++. .
T Consensus 173 -~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~--~ 247 (330)
T PRK11028 173 -EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE--IECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD--R 247 (330)
T ss_pred -CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC--EEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec--C
Confidence 2344678999999999988876 899999999742110 122333221 112334688999998777764 3
Q ss_pred CCCeEEEEECCCCc----eeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q psy4876 489 ADRHIYFWNVSSGA----CLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 489 ~Dg~I~iwd~~t~~----~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~ 542 (609)
.++.|.+|++.... .+..+........+.++++|++|+++. ..++.|.+|++.
T Consensus 248 ~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~-~~~~~v~v~~~~ 304 (330)
T PRK11028 248 TASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAG-QKSHHISVYEID 304 (330)
T ss_pred CCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEE-ccCCcEEEEEEc
Confidence 58899999996433 233334444567899999999999975 358999999874
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-13 Score=130.02 Aligned_cols=241 Identities=15% Similarity=0.230 Sum_probs=169.5
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCC--CceEEEEecCCEEE-EEecC------CeEEEEEcCCC
Q psy4876 337 NVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHD--VRVGALAWNTYILS-SGSRC------GNIVHHDVRSR 407 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~--~~V~~l~~~~~~L~-sgs~d------g~I~iwd~~~~ 407 (609)
...+++|+.|...+++|..+| .+||+++--+....-+.+. -.+..+-|..++|+ .|+.+ ..|.|||-..
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k- 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK- 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc-
Confidence 345699999999999999988 9999987533322222222 23333444445444 44333 4699999443
Q ss_pred CeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCc-EEEEEe
Q psy4876 408 DHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPN-VLASGG 486 (609)
Q Consensus 408 ~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-llasgg 486 (609)
+.++..+. ...+|.++.+.++ .|++.- .+.|+||...+. .+.++.+.....+---++.+|.... +||.-
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n-----~k~l~~~et~~NPkGlC~~~~~~~k~~LafP- 154 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDN-----PKLLHVIETRSNPKGLCSLCPTSNKSLLAFP- 154 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCC-----hhheeeeecccCCCceEeecCCCCceEEEcC-
Confidence 34555554 6788999999875 465554 578999998743 1455555433322223445554443 44443
Q ss_pred ccCCCeEEEEECCCCce--eEEE-cCCCCeEEEEEcCCCCeEEEEEecCCCe-EEEEECCCCceEEEEeC--CCCCEEEE
Q psy4876 487 GTADRHIYFWNVSSGAC--LDSI-DTKSQVCALLWNSDYKELVSAHGFAQNQ-LIIWKYPSLVKVAELHG--HSARVLNL 560 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t~~~--~~~~-~~~~~v~sl~~s~~g~~l~~~sG~~dg~-I~Iwd~~~~~~~~~l~~--h~~~V~~l 560 (609)
|..-|.|+|-|+...+. ...+ .+.+.|.+++.+.+|..+++++ ..|+ |+|||..+++++.+++. ....|.+|
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS--tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS--TKGTLIRIFDTEDGTLLQELRRGVDRADIYCI 232 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec--cCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence 46789999999986555 2344 4567999999999999999965 5665 89999999999999964 23569999
Q ss_pred EEeCCCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 561 AMSPDETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 561 ~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
+||||..+|+++|.-|+|.||.+......++
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~~~~~~~ 263 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRDTENTED 263 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeecCCCCcc
Confidence 9999999999999999999999998665444
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-13 Score=139.07 Aligned_cols=199 Identities=20% Similarity=0.241 Sum_probs=152.7
Q ss_pred EEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccc
Q psy4876 381 GALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQP 458 (609)
Q Consensus 381 ~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~ 458 (609)
.+++| ++..|++|+.||.+++|+..... .+.....|..+|.++.|+|||+.|++-+.| ..+||+.+++ ..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g------~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG------AA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC------ch
Confidence 45666 67899999999999999987753 566677899999999999999999999999 8999999998 33
Q ss_pred eEeec--CCcccEEEEEEcCCC--CcEEEEEeccCCCeEEEEECCCCce------eEEEcCCCCeEEEEEcCCCCeEEEE
Q psy4876 459 IHSLS--RHQAAVKAIAWCPWS--PNVLASGGGTADRHIYFWNVSSGAC------LDSIDTKSQVCALLWNSDYKELVSA 528 (609)
Q Consensus 459 ~~~~~--~h~~~V~~l~~sp~~--~~llasggGs~Dg~I~iwd~~t~~~------~~~~~~~~~v~sl~~s~~g~~l~~~ 528 (609)
+.... .....+..+.|..++ ..+++.+.-...+.|+.||+....- .+.+..+..|.+++.+.+|++++.
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al- 298 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL- 298 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE-
Confidence 33332 222345566676654 2333322223556677777653221 122234558999999999999999
Q ss_pred EecCCCeEEEEECCCCceEEEE-eCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 529 HGFAQNQLIIWKYPSLVKVAEL-HGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 529 sG~~dg~I~Iwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
|+.+|.|-|++..+.+.+... +.|...|+.+.|+||.+++++.+.|..+.|..+......
T Consensus 299 -GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~~ 359 (398)
T KOG0771|consen 299 -GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKTM 359 (398)
T ss_pred -eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeecccc
Confidence 568999999999999888766 579999999999999999999999999999998774433
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-14 Score=140.69 Aligned_cols=245 Identities=21% Similarity=0.343 Sum_probs=178.0
Q ss_pred CCCCeEEEEEccCCC-EEEEEeCCCeEEEEeCCCC---------eeEEEecCCCCceEEEEec--CCEEEEEecCCeEEE
Q psy4876 334 GNENVCSVAWIQEGY-MLGVGTSLGTVQLWDVSAK---------KKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVH 401 (609)
Q Consensus 334 h~~~V~~v~~spdg~-~Lasgs~dg~I~iwd~~~~---------~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~i 401 (609)
...+|.++.|.+++. .||+|+.|..|+||-+..+ +.+..+..|...|+++.|+ |.+|++|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 357899999999875 9999999999999988643 2345678899999999995 679999999999999
Q ss_pred EEcC--------C-----C--CeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCc
Q psy4876 402 HDVR--------S-----R--DHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQ 466 (609)
Q Consensus 402 wd~~--------~-----~--~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 466 (609)
|... + . ......+.+|...|..++|+|++.++++++.|+.+++||+..| .....+.+|.
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G------~l~~~~~dh~ 165 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG------QLLAILDDHE 165 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc------eeEeeccccc
Confidence 9765 2 1 1234567789999999999999999999999999999999999 7888899999
Q ss_pred ccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc--------------------C----CCCeEEEEEcCCC
Q psy4876 467 AAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID--------------------T----KSQVCALLWNSDY 522 (609)
Q Consensus 467 ~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~--------------------~----~~~v~sl~~s~~g 522 (609)
..|..++|.|-+.++..-+ .|+..+.+.+.....+..+. + .+-...++|+|+|
T Consensus 166 ~yvqgvawDpl~qyv~s~s---~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG 242 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQYVASKS---SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG 242 (434)
T ss_pred cccceeecchhhhhhhhhc---cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC
Confidence 9999999999886554433 57777776665433222111 1 1134568999999
Q ss_pred CeEEEEEecC-------CCeEEEEECCC-CceEEEEeCCCCCEEEEEEeC------------------CCCEEEEEECCC
Q psy4876 523 KELVSAHGFA-------QNQLIIWKYPS-LVKVAELHGHSARVLNLAMSP------------------DETTVLSAGADE 576 (609)
Q Consensus 523 ~~l~~~sG~~-------dg~I~Iwd~~~-~~~~~~l~~h~~~V~~l~~sp------------------dg~~L~s~s~Dg 576 (609)
.++++..|.- -+..++|+-.. ..+...+.+-...+..+.|+| -+-.++.+ ...
T Consensus 243 ~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA-t~~ 321 (434)
T KOG1009|consen 243 SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA-TKN 321 (434)
T ss_pred cEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe-ecc
Confidence 9998754311 23345555332 234445555555556666554 12234444 456
Q ss_pred CEEEEEcCCCcc
Q psy4876 577 TLRLWKIFEKVK 588 (609)
Q Consensus 577 ~I~iWdl~~~~~ 588 (609)
.|.|||.+...+
T Consensus 322 svyvydtq~~~P 333 (434)
T KOG1009|consen 322 SVYVYDTQTLEP 333 (434)
T ss_pred eEEEeccccccc
Confidence 899999887544
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-14 Score=148.30 Aligned_cols=289 Identities=16% Similarity=0.221 Sum_probs=215.6
Q ss_pred eeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 270 YYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
-.|+.|.|+..| +++++.|..|.+||+.. +....-..-.|...|..-.|.|..
T Consensus 143 GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~-------------------------~~~~l~f~SGH~~NvfQaKFiP~s 197 (559)
T KOG1334|consen 143 GCVNTVHFNQRGDVLASGSDDLQVVVWDWVS-------------------------GSPKLSFESGHCNNVFQAKFIPFS 197 (559)
T ss_pred CccceeeecccCceeeccCccceEEeehhhc-------------------------cCcccccccccccchhhhhccCCC
Confidence 468889999876 55688889999999987 444333333388888888898853
Q ss_pred --CEEEEEeCCCeEEEEeCCCCe-e--EEEecCCCCceEEEEe---cCCEEEEEecCCeEEEEEcCCCCe--eEEEEccC
Q psy4876 348 --YMLGVGTSLGTVQLWDVSAKK-K--CRTMDGHDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRDH--KVALLQNH 417 (609)
Q Consensus 348 --~~Lasgs~dg~I~iwd~~~~~-~--~~~l~~h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~~~~--~~~~~~~h 417 (609)
.-|++++.||.|++=.+.... + ...+..|.++|..++. +++.|.+++.|+.+..+|++.... ....-..+
T Consensus 198 ~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~ 277 (559)
T KOG1334|consen 198 GDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREAD 277 (559)
T ss_pred CCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccC
Confidence 789999999999987764332 2 3445669999998888 578999999999999999987642 12222333
Q ss_pred CC---CeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCCCCCCccceEeec------CCcccEEEEEEcCCCCcEEEEEec
Q psy4876 418 TQ---EVCGLKWSPDGR-YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS------RHQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 418 ~~---~V~~l~~spdg~-~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~llasggG 487 (609)
.. ....++..|... ++++|+.|-.+++||.+.-........+..+. .....|++++|+.++..++++-
T Consensus 278 ~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY-- 355 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY-- 355 (559)
T ss_pred CccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee--
Confidence 33 577889999544 89999999999999988654322222223332 2345689999998888899985
Q ss_pred cCCCeEEEEECCCCc------------eeEE-EcCC---CCeEEEE-EcCCCCeEEEEEecCCCeEEEEECCCCceEEEE
Q psy4876 488 TADRHIYFWNVSSGA------------CLDS-IDTK---SQVCALL-WNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL 550 (609)
Q Consensus 488 s~Dg~I~iwd~~t~~------------~~~~-~~~~---~~v~sl~-~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l 550 (609)
.|-.|+++.-..+. .+.. +++| ..|..+- |-|...++++ |++-|.|.||+-.+++.+..+
T Consensus 356 -nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvS--GSDCGhIFiW~K~t~eii~~M 432 (559)
T KOG1334|consen 356 -NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVS--GSDCGHIFIWDKKTGEIIRFM 432 (559)
T ss_pred -cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEe--cCccceEEEEecchhHHHHHh
Confidence 69999999544221 1111 3333 2466665 4577788877 779999999999999999888
Q ss_pred eCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 551 HGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 551 ~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
.+....|+||.=+|--.+||+.|-|..|+||.-.+.+.
T Consensus 433 egDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 433 EGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred hcccceEeccCCCCCCchhhccCCccceeeecCCcccc
Confidence 88777999999999999999999999999999855443
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-13 Score=133.97 Aligned_cols=234 Identities=17% Similarity=0.264 Sum_probs=176.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC---eeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAK---KKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRD 408 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~---~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~ 408 (609)
..++|+|.+|++|+..+|++..+..|.||..... +..+++..|...|+.++|. .+.|++++.|..-++|....+.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 3578999999999999999999999999988765 4678899999999999995 5789999999999999985443
Q ss_pred --eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 409 --HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 409 --~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
.+...+..+...++++.|+|.++.||+|+....|.||-.+..+.-+..+ +.-..+...|.+++|+|++ -++++|
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK--hikkPirStv~sldWhpnn-VLlaaG- 164 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK--HIKKPIRSTVTSLDWHPNN-VLLAAG- 164 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh--hhCCccccceeeeeccCCc-ceeccc-
Confidence 2344556688999999999999999999999999999888664332222 2223467789999999976 466665
Q ss_pred ccCCCeEEEEECCC------------------CceeEEE-cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-e
Q psy4876 487 GTADRHIYFWNVSS------------------GACLDSI-DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV-K 546 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t------------------~~~~~~~-~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~-~ 546 (609)
+.|+..++|..-- |+++.++ ...+.+..+.|+|+|..|+... .|..+.+-|..... .
T Consensus 165 -s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~--Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 165 -STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG--HDSTVSFVDAAGPSER 241 (361)
T ss_pred -ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec--CCCceEEeecCCCchh
Confidence 5899999986421 2233334 3456899999999999999864 79999999986654 3
Q ss_pred EEEEeCCCCCEEEEEEeCCCCEEEEEECC
Q psy4876 547 VAELHGHSARVLNLAMSPDETTVLSAGAD 575 (609)
Q Consensus 547 ~~~l~~h~~~V~~l~~spdg~~L~s~s~D 575 (609)
+..+....-+..++.|-.+. .++.++.|
T Consensus 242 v~~~~~~~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred ccchhhccCCceeeEeecCC-ceeecCCC
Confidence 33333333666777775443 24444444
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-13 Score=133.87 Aligned_cols=228 Identities=14% Similarity=0.212 Sum_probs=169.9
Q ss_pred EEEEEecCCC-eEEEEc-CCeEEEEeCCCCCCCceEEecCCccccccccccccccc-eeeeeeec-CCCCeEEEEEccCC
Q psy4876 272 LNLIDWSHFN-VLAVAL-GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRA-IDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 272 v~~l~wsp~~-lla~s~-dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~-h~~~V~~v~~spdg 347 (609)
|.|.+|++|+ .+|++. ...|.||.... .. .+...++. |+..|++|.|+|..
T Consensus 13 itchAwn~drt~iAv~~~~~evhiy~~~~-------------------------~~~w~~~htls~Hd~~vtgvdWap~s 67 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPNNHEVHIYSMLG-------------------------ADLWEPAHTLSEHDKIVTGVDWAPKS 67 (361)
T ss_pred eeeeeecCCCceEEeccCCceEEEEEecC-------------------------CCCceeceehhhhCcceeEEeecCCC
Confidence 7899999996 566554 56999999877 45 67788888 99999999999999
Q ss_pred CEEEEEeCCCeEEEEeCC-CC--eeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe---eEEEEccCCC
Q psy4876 348 YMLGVGTSLGTVQLWDVS-AK--KKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDH---KVALLQNHTQ 419 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~-~~--~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~---~~~~~~~h~~ 419 (609)
+.|++|+.|..-+||... .+ +..-.+..+...++++.| +++.|++|+....|.||-++.... ..++-+.+.+
T Consensus 68 nrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirS 147 (361)
T KOG1523|consen 68 NRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRS 147 (361)
T ss_pred CceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcccc
Confidence 999999999999999984 33 334455668899999999 578999999999999998876431 1123345778
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC------------CCCccceEeecCCcccEEEEEEcCCCCcEEEEEec
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQH------------TFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~------------~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggG 487 (609)
.|.+++|+|++-+|+.|+.|+.++|+..--... ....+.+..+....+.|..+.|+|.|..|...+
T Consensus 148 tv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~-- 225 (361)
T KOG1523|consen 148 TVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG-- 225 (361)
T ss_pred ceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec--
Confidence 899999999999999999999999986421110 011123334445678899999999997776665
Q ss_pred cCCCeEEEEECCCCc-eeEEEc-CCCCeEEEEEcCCCCeEEE
Q psy4876 488 TADRHIYFWNVSSGA-CLDSID-TKSQVCALLWNSDYKELVS 527 (609)
Q Consensus 488 s~Dg~I~iwd~~t~~-~~~~~~-~~~~v~sl~~s~~g~~l~~ 527 (609)
.|..+.+-|..... .+.... .+-+..++.|-.+...+.+
T Consensus 226 -Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~a 266 (361)
T KOG1523|consen 226 -HDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAA 266 (361)
T ss_pred -CCCceEEeecCCCchhccchhhccCCceeeEeecCCceeec
Confidence 79999999987654 233332 2246666766655444433
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.4e-14 Score=147.23 Aligned_cols=229 Identities=17% Similarity=0.242 Sum_probs=170.2
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~ 413 (609)
..|..++|.|||..|+.+.. ..+.|||...|..+.++++|...|.+++| +|..+++|+.|..|.+|.-.-.+ ..
T Consensus 13 hci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~L 88 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---IL 88 (1081)
T ss_pred cchheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc---ee
Confidence 38999999999988877765 46999999999999999999999999999 79999999999999999865432 22
Q ss_pred EccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeE
Q psy4876 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHI 493 (609)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I 493 (609)
-..|++.|.|+.|+|-...|++++- ...-+|..... .+... .....|.+.+|..||. +++.| -.+|+|
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK-------~V~K~-kss~R~~~CsWtnDGq-ylalG--~~nGTI 156 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQK-------SVSKH-KSSSRIICCSWTNDGQ-YLALG--MFNGTI 156 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcch-hhccccChhhh-------hHHhh-hhheeEEEeeecCCCc-EEEEe--ccCceE
Confidence 3469999999999999999999886 45778987653 22222 1345788999999985 66665 479999
Q ss_pred EEEECCCCceeEEEc----CCCCeEEEEEcCCCC-----eEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeC
Q psy4876 494 YFWNVSSGACLDSID----TKSQVCALLWNSDYK-----ELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP 564 (609)
Q Consensus 494 ~iwd~~t~~~~~~~~----~~~~v~sl~~s~~g~-----~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp 564 (609)
.+-+-. |+....++ ..++|.+++|+|... .++++ ....++.+|.+ +|+.+..-+.-.-...|+.+-+
T Consensus 157 siRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~--DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~ 232 (1081)
T KOG1538|consen 157 SIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA--DWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFT 232 (1081)
T ss_pred EeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEE--eccceeEEEEe-cceeecccccCCCCchhheecc
Confidence 998654 44444443 245899999999753 22221 13344444443 2333332222333457899999
Q ss_pred CCCEEEEEECCCCEEEEEcC
Q psy4876 565 DETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 565 dg~~L~s~s~Dg~I~iWdl~ 584 (609)
+|.++..||.|+.+.+|.-.
T Consensus 233 NGEy~LiGGsdk~L~~fTR~ 252 (1081)
T KOG1538|consen 233 NGEYILLGGSDKQLSLFTRD 252 (1081)
T ss_pred CCcEEEEccCCCceEEEeec
Confidence 99999999999999888644
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-13 Score=149.80 Aligned_cols=210 Identities=18% Similarity=0.202 Sum_probs=147.7
Q ss_pred CCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecC---CeEEEEEcCCCCe-eEEEEccCCCCeEEEEEccC
Q psy4876 356 LGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRC---GNIVHHDVRSRDH-KVALLQNHTQEVCGLKWSPD 429 (609)
Q Consensus 356 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~d---g~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spd 429 (609)
+..|.|||..... .+.+..|...+....| +++.|+.++.+ ..|++||+.++.. .+..+.+ ....++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCC
Confidence 4689999986544 5667778888999999 57778776643 4699999987642 2222333 3446899999
Q ss_pred CCEEEEEe-CCCcEEE--EeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC-CceeE
Q psy4876 430 GRYLASGG-NDNLLNI--WSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS-GACLD 505 (609)
Q Consensus 430 g~~lasgs-~Dg~I~i--wd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t-~~~~~ 505 (609)
|+.|+.++ .+|.+.| ||+.++ ....+..+...+...+|+|+|..+++++ ..++...||++.. +....
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~-------~~~~lt~~~~~~~~~~wSpDG~~i~f~s--~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGG-------TPSQLTSGAGNNTEPSWSPDGQSILFTS--DRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCC-------CeEeeccCCCCcCCEEECCCCCEEEEEE--CCCCCceEEEEECCCCCeE
Confidence 99888765 5776555 466544 3455666777788999999998777765 3567778887653 22223
Q ss_pred EEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 506 SIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 506 ~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
.+... . ....|+|+|+.+++.++ ..+.+||+.++........+ ....+.|+|||++|+.++.++.+.+|.+..
T Consensus 330 ~l~~~-~-~~~~~SpDG~~ia~~~~---~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~ 402 (429)
T PRK01742 330 LVGGR-G-YSAQISADGKTLVMING---DNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVS 402 (429)
T ss_pred EecCC-C-CCccCCCCCCEEEEEcC---CCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 33222 2 45789999999988653 45677999888654322222 235688999999999999999999888753
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.1e-15 Score=160.09 Aligned_cols=233 Identities=17% Similarity=0.286 Sum_probs=181.3
Q ss_pred EEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~ 348 (609)
|.|..|...+ +++++.|..|+||..++ ..++.... |.+.|+.++.+.+..
T Consensus 193 Vyca~fDrtg~~Iitgsdd~lvKiwS~et---------------------------~~~lAs~rGhs~ditdlavs~~n~ 245 (1113)
T KOG0644|consen 193 VYCAIFDRTGRYIITGSDDRLVKIWSMET---------------------------ARCLASCRGHSGDITDLAVSSNNT 245 (1113)
T ss_pred eeeeeeccccceEeecCccceeeeeeccc---------------------------hhhhccCCCCccccchhccchhhh
Confidence 7777787765 89999999999999776 33556666 999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEE--------------E
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVAL--------------L 414 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~--------------~ 414 (609)
++|+++.|..|++|.+.++..+..+.+|++.|++|+|.+.- +.+.||++++||.+-.. .+.. +
T Consensus 246 ~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~-~~y~prp~~~~~~~~~~s~ 322 (1113)
T KOG0644|consen 246 MIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEP-RIYVPRPLKFTEKDLVDSI 322 (1113)
T ss_pred hhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc--cCCCCCceEeccccccc-cccCCCCCCcccccceeee
Confidence 99999999999999999999999999999999999998765 77899999999988110 0000 0
Q ss_pred c----------------cCCCCeEEEEEccCCCEEEEEe-----------CCCcEEEEeCCCCCCCCCccceEeecCCcc
Q psy4876 415 Q----------------NHTQEVCGLKWSPDGRYLASGG-----------NDNLLNIWSGVPGQHTFSTQPIHSLSRHQA 467 (609)
Q Consensus 415 ~----------------~h~~~V~~l~~spdg~~lasgs-----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 467 (609)
. ....+.-+++|...+-.+++++ .+..+.+|++.++ ...+.+.+|..
T Consensus 323 ~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g------~l~H~l~ghsd 396 (1113)
T KOG0644|consen 323 LFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG------QLLHNLMGHSD 396 (1113)
T ss_pred eccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc------hhhhhhccccc
Confidence 0 0001122233333333333333 3455778888887 77888899999
Q ss_pred cEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q psy4876 468 AVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL 544 (609)
Q Consensus 468 ~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~ 544 (609)
.+..+.++|....+..++| .||...|||+-.|..++... .++.+....|+++|..++. ....|+++|.....+
T Consensus 397 ~~yvLd~Hpfn~ri~msag--~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~l--sd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 397 EVYVLDVHPFNPRIAMSAG--YDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIAL--SDDHGQLYILGTGQS 470 (1113)
T ss_pred ceeeeeecCCCcHhhhhcc--CCCceEeeecccCCcceeeecccceeeccccCCCCceEec--CCCCCceEEeccCCC
Confidence 9999999999998888886 89999999999988776654 5678999999999999888 447788888876443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.4e-13 Score=144.43 Aligned_cols=219 Identities=18% Similarity=0.157 Sum_probs=149.7
Q ss_pred CCCCeEEEEEccCCCEEEEEeCC---CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEE-EEEecCC--eEEEEEcC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSL---GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYIL-SSGSRCG--NIVHHDVR 405 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L-~sgs~dg--~I~iwd~~ 405 (609)
+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +..+.+...++.| ++..| ++.+.+| .|++||+.
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~ 280 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG 280 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence 56779999999999999987643 469999998776533 3334445557788 56655 4556655 59999998
Q ss_pred CCCeeEEEEccCCCCeEEEEEccCCCEEEEEeC-CCc--EEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEE
Q psy4876 406 SRDHKVALLQNHTQEVCGLKWSPDGRYLASGGN-DNL--LNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 406 ~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~-Dg~--I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 482 (609)
++. +..+..+.......+|+|||++|+.++. +|. |+++|+.++. ...+..+......++|+|+|..++
T Consensus 281 ~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~-------~~~lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 281 SRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS-------AERLTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred CCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-------eEEeecCCCCccCEEECCCCCEEE
Confidence 763 4455556556678899999999887764 444 7777776652 222222334455789999998777
Q ss_pred EEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceEEEEeCCCCCEEEEE
Q psy4876 483 ASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGF-AQNQLIIWKYPSLVKVAELHGHSARVLNLA 561 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~-~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~ 561 (609)
++........|.+||+.+++.. .+..........|+|+|+.++..+.. ..+.|.+++.. +.....+..+.+.+...+
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~ 429 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPA 429 (433)
T ss_pred EEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCc
Confidence 7653112347999999887755 44433345677999999998876532 23468888874 444555655667778888
Q ss_pred EeC
Q psy4876 562 MSP 564 (609)
Q Consensus 562 ~sp 564 (609)
|+|
T Consensus 430 wsp 432 (433)
T PRK04922 430 WSP 432 (433)
T ss_pred cCC
Confidence 876
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-13 Score=149.55 Aligned_cols=247 Identities=19% Similarity=0.282 Sum_probs=174.4
Q ss_pred eEEEEEecCC-C---eEEEEcCCeEEEEeCCCC--CCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEc
Q psy4876 271 YLNLIDWSHF-N---VLAVALGGSIYLWNGESD--SNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWI 344 (609)
Q Consensus 271 ~v~~l~wsp~-~---lla~s~dg~I~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~s 344 (609)
+|..|.+-.+ . +++++.||.|+||+--.. +....+..+.+- .-.... ..+.=.-+.|-
T Consensus 1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~L---------------s~~~~~-~r~~~~v~dWq 1174 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSL---------------SDQLPG-ARGTGLVVDWQ 1174 (1387)
T ss_pred ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccc---------------cccCcc-CCCCCeeeehh
Confidence 4666665443 2 888999999999975442 112222222211 000011 11222557888
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeEEEecC-CCCceEEEEe---cCCEEEEEecCCeEEEEEcCCCCe--eEEEEccCC
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKKCRTMDG-HDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRDH--KVALLQNHT 418 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~~~~--~~~~~~~h~ 418 (609)
....+|++++.-..|+|||+.....+..+.. ....|+++.- +|+++++|..||.|++||.+.... .+...+.|.
T Consensus 1175 Q~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~ 1254 (1387)
T KOG1517|consen 1175 QQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHN 1254 (1387)
T ss_pred hhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccC
Confidence 8776777777678999999998877776653 4556777776 479999999999999999987643 577788898
Q ss_pred CC--eEEEEEccCCCE-EEEEeCCCcEEEEeCCCCCCCCCccceEeecCC---cccEEEEEEcCCCCcEEEEEeccCCCe
Q psy4876 419 QE--VCGLKWSPDGRY-LASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH---QAAVKAIAWCPWSPNVLASGGGTADRH 492 (609)
Q Consensus 419 ~~--V~~l~~spdg~~-lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h---~~~V~~l~~sp~~~~llasggGs~Dg~ 492 (609)
.. |..+.+.+.|-- |++|+.||.|++||++.... .....+..| .+.++++..|++. .++|+|+ . +.
T Consensus 1255 ~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~----e~~~~iv~~~~yGs~lTal~VH~ha-piiAsGs--~-q~ 1326 (1387)
T KOG1517|consen 1255 DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK----ETFLTIVAHWEYGSALTALTVHEHA-PIIASGS--A-QL 1326 (1387)
T ss_pred CcccceeEEeecCCCcceeeeccCCeEEEEecccCcc----cccceeeeccccCccceeeeeccCC-CeeeecC--c-ce
Confidence 87 999999986654 99999999999999997411 112222222 2358999999976 5888874 3 99
Q ss_pred EEEEECCCCceeEEEcC--------CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q psy4876 493 IYFWNVSSGACLDSIDT--------KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL 544 (609)
Q Consensus 493 I~iwd~~t~~~~~~~~~--------~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~ 544 (609)
|+||++. |+.+..+.. .+.+.+++|+|..-.+++ |+.|+.|.||.....
T Consensus 1327 ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAa--G~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1327 IKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAA--GSADSTVSIYSCEKP 1383 (1387)
T ss_pred EEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhh--ccCCceEEEeecCCc
Confidence 9999986 444444432 136799999999888887 779999999987644
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-12 Score=142.55 Aligned_cols=286 Identities=17% Similarity=0.242 Sum_probs=205.3
Q ss_pred EEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC---CE
Q psy4876 275 IDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG---YM 349 (609)
Q Consensus 275 l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg---~~ 349 (609)
-.||+|+ .+.+..+..|.||...+ +.+.. .++ |...++.+.+.|.. .+
T Consensus 22 avfSnD~k~l~~~~~~~V~VyS~~T-------------------------g~~i~--~l~~~~a~l~s~~~~~~~~~~~~ 74 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGNFVKVYSTAT-------------------------GECIT--SLEDHTAPLTSVIVLPSSENANY 74 (792)
T ss_pred cccccCCcEEEEeeCCEEEEEecch-------------------------Hhhhh--hcccccCccceeeecCCCccceE
Confidence 3467775 77788899999999988 55443 455 88999999998865 57
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEecCCCCc-------------eEE----------------------------------
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCRTMDGHDVR-------------VGA---------------------------------- 382 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~-------------V~~---------------------------------- 382 (609)
+.+++.+|.|++||...+.+++++..+-.. +..
T Consensus 75 ~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~ 154 (792)
T KOG1963|consen 75 LIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKG 154 (792)
T ss_pred EEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccch
Confidence 789999999999999998887766522110 000
Q ss_pred -----------EEec-CCEEEEEecCCeEEEEEcCCCCeeE---EEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q psy4876 383 -----------LAWN-TYILSSGSRCGNIVHHDVRSRDHKV---ALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSG 447 (609)
Q Consensus 383 -----------l~~~-~~~L~sgs~dg~I~iwd~~~~~~~~---~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~ 447 (609)
|.++ +..+.....+..+.+|.+....... ..-..|...+++.++||.++++|+|..||.|.+|.-
T Consensus 155 d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d 234 (792)
T KOG1963|consen 155 DFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRD 234 (792)
T ss_pred hhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEec
Confidence 0000 0011111223345566665532111 111246667899999999999999999999999975
Q ss_pred CCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEE
Q psy4876 448 VPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVS 527 (609)
Q Consensus 448 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~ 527 (609)
-..+ ........+.-|...|.+++|+++|.+ |.+|| ..+.+.+|.+.+++...--...+.|..+.++||+.+.+.
T Consensus 235 ~~~~--~~~~t~t~lHWH~~~V~~L~fS~~G~~-LlSGG--~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl 309 (792)
T KOG1963|consen 235 FGSS--DDSETCTLLHWHHDEVNSLSFSSDGAY-LLSGG--REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSL 309 (792)
T ss_pred cccc--cccccceEEEecccccceeEEecCCce-Eeecc--cceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEE
Confidence 4311 111344566678999999999999965 45554 899999999999984444456789999999999999998
Q ss_pred EEecCCCeEEEEECCCCceEEEEeCC-----------CCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 528 AHGFAQNQLIIWKYPSLVKVAELHGH-----------SARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 528 ~sG~~dg~I~Iwd~~~~~~~~~l~~h-----------~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
++ .|++|.+....+.+....+.+- .+-.+.++++|.-+.++-.+..|.|.+||+.+.....+...
T Consensus 310 ~~--~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v 385 (792)
T KOG1963|consen 310 VL--EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQV 385 (792)
T ss_pred Ee--cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEE
Confidence 77 6999999998777655554332 34467889999777888899999999999998777655444
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-13 Score=141.66 Aligned_cols=218 Identities=19% Similarity=0.307 Sum_probs=160.6
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeEEEec----CCCCceEEEEe---cCCEEEEEecCCeEEEEEcCCCCeeEEEEccC
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKKCRTMD----GHDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRDHKVALLQNH 417 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~----~h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h 417 (609)
+++--|.+|-..|.|.+.|....+..+.+. -....|+|+.| +...++++-.+|.+++||...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~----------- 251 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI----------- 251 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-----------
Confidence 456677789999999999976533222121 23478999999 567888888999999998721
Q ss_pred CCCeEEEEE--ccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEE
Q psy4876 418 TQEVCGLKW--SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYF 495 (609)
Q Consensus 418 ~~~V~~l~~--spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~i 495 (609)
....+...| .+++..|+....-+ ... ..++..+....+.|..++|+|||.+|..++ .||.++|
T Consensus 252 ~~~~t~p~~~~~k~~~~f~i~t~ks-------k~~-----rNPv~~w~~~~g~in~f~FS~DG~~LA~VS---qDGfLRv 316 (636)
T KOG2394|consen 252 VCGATAPSYQALKDGDQFAILTSKS-------KKT-----RNPVARWHIGEGSINEFAFSPDGKYLATVS---QDGFLRI 316 (636)
T ss_pred cccCCCCcccccCCCCeeEEeeeec-------ccc-----CCccceeEeccccccceeEcCCCceEEEEe---cCceEEE
Confidence 111111222 33565555433211 111 035555555667899999999997666654 8999999
Q ss_pred EECCCCceeEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeC----------
Q psy4876 496 WNVSSGACLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP---------- 564 (609)
Q Consensus 496 wd~~t~~~~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp---------- 564 (609)
||..+.+++..+.. -+...+++|+|||++|++ |.+|.-|.||.+...+.+..-++|..+|..|+|.|
T Consensus 317 F~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvt--GGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~ 394 (636)
T KOG2394|consen 317 FDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVT--GGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNN 394 (636)
T ss_pred eeccHHHHHHHHHhhccceEEEEEcCCccEEEe--cCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccc
Confidence 99998877766543 468999999999999999 77999999999999999999999999999999983
Q ss_pred -------------------------CC-------------CEEEEEECCCCEEEEEcCCCccch
Q psy4876 565 -------------------------DE-------------TTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 565 -------------------------dg-------------~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
++ -.+.+++.|-.+.+||+.......
T Consensus 395 ~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 395 FSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred cccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 01 146788899999999998766544
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-13 Score=133.83 Aligned_cols=227 Identities=21% Similarity=0.301 Sum_probs=163.5
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecC-CCCceEEEEe---cCCEEEEEecCCeEEEEEcCCCCe-
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDG-HDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRDH- 409 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~~~~- 409 (609)
+-.+..++|++.-..+|++..|-.|++||-.. +....++. ....|.|++| .+..|+.|++.| |.+|.......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 45678899999878889999999999999877 55555543 4578999999 457888888754 88997653211
Q ss_pred ------------eEEEEccCCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcC
Q psy4876 410 ------------KVALLQNHTQEVCGLKWSPDGRYLASGGN-DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476 (609)
Q Consensus 410 ------------~~~~~~~h~~~V~~l~~spdg~~lasgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 476 (609)
.+....+| -.|+++.|.+||..+++++- |..|.|||..++.. .++. ....+.+.-+.|+|
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~----~pL~--~~glgg~slLkwSP 248 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK----IPLI--PKGLGGFSLLKWSP 248 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc----cccc--ccCCCceeeEEEcC
Confidence 12223345 68999999999999999885 57899999999842 2332 33556789999999
Q ss_pred CCCcEEEEEeccCCCeEEEEEC-CCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-----------C
Q psy4876 477 WSPNVLASGGGTADRHIYFWNV-SSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS-----------L 544 (609)
Q Consensus 477 ~~~~llasggGs~Dg~I~iwd~-~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~-----------~ 544 (609)
|+..++++. -|+..++|+. ++..+..-.-..+.|...+|+|+|..|+.++ .+.-.+|.+.. +
T Consensus 249 dgd~lfaAt---~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~---sgsp~lysl~f~~~~~~~~~~~~ 322 (445)
T KOG2139|consen 249 DGDVLFAAT---CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC---SGSPRLYSLTFDGEDSVFLRPQS 322 (445)
T ss_pred CCCEEEEec---ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE---cCCceEEEEeecCCCccccCccc
Confidence 998888874 7999999954 4555555555666999999999999988765 33444443310 0
Q ss_pred ----ceEEEEe------C---CCCCEEEEEEeCCCCEEEEEECCC
Q psy4876 545 ----VKVAELH------G---HSARVLNLAMSPDETTVLSAGADE 576 (609)
Q Consensus 545 ----~~~~~l~------~---h~~~V~~l~~spdg~~L~s~s~Dg 576 (609)
..+..+. + -.+.+.+++|.|.|.+||+.-..+
T Consensus 323 ~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 323 IKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred ceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 0111111 1 136789999999999999875543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-13 Score=128.80 Aligned_cols=158 Identities=20% Similarity=0.394 Sum_probs=116.6
Q ss_pred eEEEEEccCCCEEEEEeC----------CCcEEEEeCCCCCCCCCccceEeecC-CcccEEEEEEcCCCCcEEEEEeccC
Q psy4876 421 VCGLKWSPDGRYLASGGN----------DNLLNIWSGVPGQHTFSTQPIHSLSR-HQAAVKAIAWCPWSPNVLASGGGTA 489 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~----------Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~llasggGs~ 489 (609)
-..+.|+++|.+|++-.. -+...+|-++... .++..+.- ..++|.+++|+|+|..++++.| ..
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~-----~~~~~i~l~~~~~I~~~~WsP~g~~favi~g-~~ 81 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN-----IPVESIELKKEGPIHDVAWSPNGNEFAVIYG-SM 81 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC-----CccceeeccCCCceEEEEECcCCCEEEEEEc-cC
Confidence 356889999988766443 1234555553321 23333332 3457999999999987766653 67
Q ss_pred CCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEE-ecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCE
Q psy4876 490 DRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAH-GFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETT 568 (609)
Q Consensus 490 Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~s-G~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~ 568 (609)
++.|.+||++ ++.+..+. ...+..+.|+|+|+++++++ |...|.|.+||..+.+.+.... | ..++.++|+|||++
T Consensus 82 ~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 82 PAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRY 157 (194)
T ss_pred CcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCE
Confidence 8899999997 66666664 45778899999999999864 3346789999999988887764 3 34789999999999
Q ss_pred EEEEEC------CCCEEEEEcCCCcc
Q psy4876 569 VLSAGA------DETLRLWKIFEKVK 588 (609)
Q Consensus 569 L~s~s~------Dg~I~iWdl~~~~~ 588 (609)
|++++. |+.++||++.+...
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred EEEEEeccceeccccEEEEEecCeEe
Confidence 999874 89999999975543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-12 Score=140.98 Aligned_cols=218 Identities=15% Similarity=0.110 Sum_probs=151.3
Q ss_pred CCCCeEEEEEccCCCEEEEEeC---CCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEE-EEEecCCe--EEEEEcC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTS---LGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYIL-SSGSRCGN--IVHHDVR 405 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~---dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L-~sgs~dg~--I~iwd~~ 405 (609)
+...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+...+....| +|..| ++.+.+|. |++||+.
T Consensus 200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 278 (435)
T PRK05137 200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR 278 (435)
T ss_pred CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence 6678999999999999888763 468999999887653 44556667778888 56655 45566655 7777887
Q ss_pred CCCeeEEEEccCCCCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEE
Q psy4876 406 SRDHKVALLQNHTQEVCGLKWSPDGRYLASGGN-DN--LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 406 ~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~-Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 482 (609)
++ ....+..+........|+|||+.|+..+. +| .|++||+..+ ....+..+...+....|+|+|+.++
T Consensus 279 ~~--~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~-------~~~~lt~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 279 SG--TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS-------NPRRISFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred CC--ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC-------CeEEeecCCCcccCeEECCCCCEEE
Confidence 75 34556666666778999999999888764 33 6888898765 2334443455567789999998877
Q ss_pred EEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCC----CeEEEEECCCCceEEEEeCCCCCEE
Q psy4876 483 ASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQ----NQLIIWKYPSLVKVAELHGHSARVL 558 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~d----g~I~Iwd~~~~~~~~~l~~h~~~V~ 558 (609)
++.....+..|.+||+..+. ...+.....+..+.|+|+|+.|+..+.... ..|.++|+..+.. ..+. ..+.+.
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~ 426 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDAS 426 (435)
T ss_pred EEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCcc
Confidence 76532223578999986554 344444446778999999999987653222 3688888865544 3443 244466
Q ss_pred EEEEeC
Q psy4876 559 NLAMSP 564 (609)
Q Consensus 559 ~l~~sp 564 (609)
..+|+|
T Consensus 427 ~p~Wsp 432 (435)
T PRK05137 427 DPAWSP 432 (435)
T ss_pred CcccCC
Confidence 777776
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-12 Score=139.00 Aligned_cols=220 Identities=12% Similarity=0.090 Sum_probs=153.5
Q ss_pred CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEec---CCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCC
Q psy4876 357 GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSR---CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR 431 (609)
Q Consensus 357 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~---dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 431 (609)
..|.+||.. +...+.+..|...+.+.+| +++.|+..+. +..|++||+.++. ...+..+.+.+...+|+|||+
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~--~~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ--RELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc--EEEeecCCCcccCcEECCCCC
Confidence 478899985 4555667778889999999 5777776653 4689999998764 334555666778899999999
Q ss_pred EEE-EEeCCCc--EEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc
Q psy4876 432 YLA-SGGNDNL--LNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID 508 (609)
Q Consensus 432 ~la-sgs~Dg~--I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~ 508 (609)
.|+ +.+.++. |++||+.++ ....+..+........|+|+|..++++........|++||+.+++......
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~-------~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~ 331 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSG-------TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF 331 (435)
T ss_pred EEEEEEecCCCceEEEEECCCC-------ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec
Confidence 876 4455554 888898876 234566666667789999999877766521223478999988766544433
Q ss_pred CCCCeEEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECC------CCEEEE
Q psy4876 509 TKSQVCALLWNSDYKELVSAHGF-AQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGAD------ETLRLW 581 (609)
Q Consensus 509 ~~~~v~sl~~s~~g~~l~~~sG~-~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D------g~I~iW 581 (609)
....+....|+|+|+.++..... .+..|.+||...+.. ..+. +...+..+.|+|||+.|+..+.+ ..|.++
T Consensus 332 ~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 332 GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 44566778999999999886531 224688889755443 3332 22356788999999988766543 247777
Q ss_pred EcCCCcc
Q psy4876 582 KIFEKVK 588 (609)
Q Consensus 582 dl~~~~~ 588 (609)
++.++..
T Consensus 410 dl~g~~~ 416 (435)
T PRK05137 410 DLTGRNE 416 (435)
T ss_pred ECCCCce
Confidence 7765443
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-14 Score=146.47 Aligned_cols=265 Identities=18% Similarity=0.252 Sum_probs=207.2
Q ss_pred eeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 270 YYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
|.-..++++.+| ++.++..|.|..+|+.+ +. ..+++.-...|.++.|-.+.
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t-------------------------~~--L~~Ei~v~Etv~Dv~~LHne 182 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT-------------------------KK--LHFEINVMETVRDVTFLHNE 182 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeeccc-------------------------ce--eeeeeehhhhhhhhhhhcch
Confidence 334458888886 88899999999999988 44 34455556789999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
+++|++-. ..+.|||- .|..+..+..| .+|..+.|- -.+|++++..|.+...|+.++ ..+..+..-.+.+..++
T Consensus 183 q~~AVAQK-~y~yvYD~-~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G-klVa~~~t~~G~~~vm~ 258 (545)
T KOG1272|consen 183 QFFAVAQK-KYVYVYDN-NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTG-KLVASIRTGAGRTDVMK 258 (545)
T ss_pred HHHHhhhh-ceEEEecC-CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechh-hhhHHHHccCCccchhh
Confidence 99998766 67999995 46777777754 567888883 467888899999999999998 47777777788899999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeE
Q psy4876 426 WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLD 505 (609)
Q Consensus 426 ~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~ 505 (609)
-+|-+..+-+|...|+|.+|..... +++..+..|.++|.+|++.+.|.+++.+| .|+.++|||+++-..+.
T Consensus 259 qNP~NaVih~GhsnGtVSlWSP~sk------ePLvKiLcH~g~V~siAv~~~G~YMaTtG---~Dr~~kIWDlR~~~ql~ 329 (545)
T KOG1272|consen 259 QNPYNAVIHLGHSNGTVSLWSPNSK------EPLVKILCHRGPVSSIAVDRGGRYMATTG---LDRKVKIWDLRNFYQLH 329 (545)
T ss_pred cCCccceEEEcCCCceEEecCCCCc------chHHHHHhcCCCcceEEECCCCcEEeecc---cccceeEeeeccccccc
Confidence 9998889999999999999999887 78888889999999999999986555544 89999999999888888
Q ss_pred EEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC---ceEEEEeCC--CCCEEEEEEeCCCCEEEEEECCCCE
Q psy4876 506 SIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL---VKVAELHGH--SARVLNLAMSPDETTVLSAGADETL 578 (609)
Q Consensus 506 ~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~---~~~~~l~~h--~~~V~~l~~spdg~~L~s~s~Dg~I 578 (609)
++........+++|..|.+.+. ....|.||.-... ..-.-+..| .+.|.++.|.|-...|-.|-.-|.-
T Consensus 330 t~~tp~~a~~ls~SqkglLA~~----~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~t 403 (545)
T KOG1272|consen 330 TYRTPHPASNLSLSQKGLLALS----YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGIT 403 (545)
T ss_pred eeecCCCccccccccccceeee----cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCce
Confidence 8877778888999888755443 3568999963211 111112223 3579999999976666655554433
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-11 Score=119.82 Aligned_cols=274 Identities=13% Similarity=0.176 Sum_probs=187.9
Q ss_pred EEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEE-
Q psy4876 275 IDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGV- 352 (609)
Q Consensus 275 l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Las- 352 (609)
++|+.|. -++++.|...+||+.+--+ .....++ +.+.+.-+..--..++||.
T Consensus 11 vs~NQD~ScFava~~~Gfriyn~~P~k-------------------------e~~~r~~-~~~G~~~veMLfR~N~laLV 64 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTGFRIYNCDPFK-------------------------ESASRQF-IDGGFKIVEMLFRSNYLALV 64 (346)
T ss_pred EEEccCCceEEEEecCceEEEecCchh-------------------------hhhhhcc-ccCchhhhhHhhhhceEEEe
Confidence 8999985 8899999999999987511 0001111 1111211222222345554
Q ss_pred EeCC------CeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEcc--CCCCeEEE
Q psy4876 353 GTSL------GTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQN--HTQEVCGL 424 (609)
Q Consensus 353 gs~d------g~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l 424 (609)
|+.+ ..|.|||-...+++.++. ...+|.++.+....|++.-. +.|+||.+.+.-+.+..+.. ....++++
T Consensus 65 GGg~~pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~ 142 (346)
T KOG2111|consen 65 GGGSRPKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSL 142 (346)
T ss_pred cCCCCCCCCCceEEEEecccCcEEEEEE-eccceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeeecccCCCceEee
Confidence 3332 369999976667777776 67899999998888877754 78999999855444444332 22346666
Q ss_pred EEccCCCEEEE-EeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce
Q psy4876 425 KWSPDGRYLAS-GGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC 503 (609)
Q Consensus 425 ~~spdg~~las-gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~ 503 (609)
+-+.+..+||. |-.-|.|.|-|+..... .+-..+..|...|.|++.+-+| .++|+++ +..--|||||..+|+.
T Consensus 143 ~~~~~k~~LafPg~k~GqvQi~dL~~~~~----~~p~~I~AH~s~Iacv~Ln~~G-t~vATaS-tkGTLIRIFdt~~g~~ 216 (346)
T KOG2111|consen 143 CPTSNKSLLAFPGFKTGQVQIVDLASTKP----NAPSIINAHDSDIACVALNLQG-TLVATAS-TKGTLIRIFDTEDGTL 216 (346)
T ss_pred cCCCCceEEEcCCCccceEEEEEhhhcCc----CCceEEEcccCceeEEEEcCCc-cEEEEec-cCcEEEEEEEcCCCcE
Confidence 65555556665 44568999999987621 1346778899999999999988 6888885 3445589999999999
Q ss_pred eEEEcCC---CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc---e---------------------EEEEeCCCCC
Q psy4876 504 LDSIDTK---SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV---K---------------------VAELHGHSAR 556 (609)
Q Consensus 504 ~~~~~~~---~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~---~---------------------~~~l~~h~~~ 556 (609)
+.++.-+ ..|.+++|+|+..+|++++ +.|+|+||.+.... . +..+.-..+.
T Consensus 217 l~E~RRG~d~A~iy~iaFSp~~s~LavsS--dKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~ 294 (346)
T KOG2111|consen 217 LQELRRGVDRADIYCIAFSPNSSWLAVSS--DKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGT 294 (346)
T ss_pred eeeeecCCchheEEEEEeCCCccEEEEEc--CCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCC
Confidence 9999754 4899999999999999965 89999999875321 1 1112223455
Q ss_pred EEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 557 VLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 557 V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
..-++|-.+.+.++..+.||+-+=+.+.
T Consensus 295 ~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 295 QCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred cEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 6667787776778888888887654443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-12 Score=140.21 Aligned_cols=221 Identities=15% Similarity=0.112 Sum_probs=146.0
Q ss_pred CCCCeEEEEEccCCCEEEEEeCC---CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEE-EEecCCeEEEEEcCCC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSL---GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILS-SGSRCGNIVHHDVRSR 407 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~-sgs~dg~I~iwd~~~~ 407 (609)
+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +......+....| ++..|+ +.+.+|...+|.++..
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 56788999999999999887643 359999999886543 3334455667888 566665 5677887666654332
Q ss_pred CeeEEEEccCCCCeEEEEEccCCCEEEEEeC-CCcEEEEeC--CCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 408 DHKVALLQNHTQEVCGLKWSPDGRYLASGGN-DNLLNIWSG--VPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 408 ~~~~~~~~~h~~~V~~l~~spdg~~lasgs~-Dg~I~iwd~--~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
......+..+...+....|+|||++|+..+. +|...||.+ ..+ . ...+..+.......+|+|+|+.++.+
T Consensus 273 ~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g------~-~~~lt~~g~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 273 GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG------A-AQRVTFTGSYNTSPRISPDGKLLAYI 345 (427)
T ss_pred CCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC------c-eEEEecCCCCcCceEECCCCCEEEEE
Confidence 2234555556656677899999998887664 455566654 433 1 22222222334567899999877766
Q ss_pred EeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCC--eEEEEECCCCceEEEEeCCCCCEEEEEE
Q psy4876 485 GGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQN--QLIIWKYPSLVKVAELHGHSARVLNLAM 562 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg--~I~Iwd~~~~~~~~~l~~h~~~V~~l~~ 562 (609)
+....+..|.+||+.+++... +..........|+|+|+.|+.++. ..| .+.+.+. ++.....+..+.+.+...+|
T Consensus 346 s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~~-~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~w 422 (427)
T PRK02889 346 SRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYATQ-QGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSW 422 (427)
T ss_pred EccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEEe-cCCCEEEEEEEC-CCCceEEeecCCCCCCCCcc
Confidence 531122379999999887543 333334567899999999988753 232 3666666 45556666667777888888
Q ss_pred eCC
Q psy4876 563 SPD 565 (609)
Q Consensus 563 spd 565 (609)
+|-
T Consensus 423 sp~ 425 (427)
T PRK02889 423 GPF 425 (427)
T ss_pred CCC
Confidence 874
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-12 Score=145.56 Aligned_cols=255 Identities=15% Similarity=0.234 Sum_probs=176.4
Q ss_pred eeeeec-CCCCeEEEEEccCC-CEEEEEeCCCeEEEEeCCCC-------eeEEEecCCCCceEEEEe--cCCEEEEEecC
Q psy4876 328 HLMDLE-GNENVCSVAWIQEG-YMLGVGTSLGTVQLWDVSAK-------KKCRTMDGHDVRVGALAW--NTYILSSGSRC 396 (609)
Q Consensus 328 ~l~~~~-h~~~V~~v~~spdg-~~Lasgs~dg~I~iwd~~~~-------~~~~~l~~h~~~V~~l~~--~~~~L~sgs~d 396 (609)
.+..+. |...|..++.+++. .++++|+.||+|++|+...- +...++.....++.++.. +++.+++++.|
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC
Confidence 444454 88888888888765 99999999999999998632 223334434566777666 78999999999
Q ss_pred CeEEEEEcCCCC--e----eEEEEccCC-CCeEE-EEEcc-CCC-EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCc
Q psy4876 397 GNIVHHDVRSRD--H----KVALLQNHT-QEVCG-LKWSP-DGR-YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQ 466 (609)
Q Consensus 397 g~I~iwd~~~~~--~----~~~~~~~h~-~~V~~-l~~sp-dg~-~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 466 (609)
|.|.+.+++... . .......+. +.+.+ -+|.. ++. .++.+..-+.|..||+++....+ ..+.....
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w----~lk~~~~h 1195 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW----RLKNQLRH 1195 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH----hhhcCccc
Confidence 999999987621 1 111122222 23333 33333 333 68888888999999999873321 12223345
Q ss_pred ccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC--CCeEEEEEcCCCC--eEEEEEec-CCCeEEEEEC
Q psy4876 467 AAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK--SQVCALLWNSDYK--ELVSAHGF-AQNQLIIWKY 541 (609)
Q Consensus 467 ~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~--~~v~sl~~s~~g~--~l~~~sG~-~dg~I~Iwd~ 541 (609)
+.|++++.+|.+. .++.| +..|.+.+||++-+.++.++.+. .++..+..++-.+ -..+++|. ..+.|.+|++
T Consensus 1196 G~vTSi~idp~~~-WlviG--ts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCN-WLVIG--TSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred cceeEEEecCCce-EEEEe--cCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 7899999999886 66665 58999999999999999888754 4777777777655 33333344 7899999999
Q ss_pred CCCceEEEEeCC-C------------------CCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 542 PSLVKVAELHGH-S------------------ARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 542 ~~~~~~~~l~~h-~------------------~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
.++.+...+... . -.....++..-+..+.+|+.|..||.||.......
T Consensus 1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 988766665432 1 01122233334568999999999999999876654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-11 Score=128.98 Aligned_cols=274 Identities=14% Similarity=0.125 Sum_probs=177.7
Q ss_pred EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEe
Q psy4876 285 VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWD 363 (609)
Q Consensus 285 ~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd 363 (609)
-..++.|.+.|..+ .+ .+.+++ ....-..+.|+|||+++++++.||.|.++|
T Consensus 12 ~~~~~~v~viD~~t-------------------------~~--~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD 64 (369)
T PF02239_consen 12 ERGSGSVAVIDGAT-------------------------NK--VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVID 64 (369)
T ss_dssp EGGGTEEEEEETTT--------------------------S--EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEE
T ss_pred ecCCCEEEEEECCC-------------------------Ce--EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEE
Confidence 44579999999877 33 344454 233345578999999999999999999999
Q ss_pred CCCCeeEEEecCCCCceEEEEe--cCCEEEEEe-cCCeEEEEEcCCCCeeEEEEcc-------CCCCeEEEEEccCCCEE
Q psy4876 364 VSAKKKCRTMDGHDVRVGALAW--NTYILSSGS-RCGNIVHHDVRSRDHKVALLQN-------HTQEVCGLKWSPDGRYL 433 (609)
Q Consensus 364 ~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs-~dg~I~iwd~~~~~~~~~~~~~-------h~~~V~~l~~spdg~~l 433 (609)
+.+++.+.++..... ..++++ +|+++++++ ..+.+.++|..+.+ .+..+.. ....+.+|..+|....+
T Consensus 65 ~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle-~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~f 142 (369)
T PF02239_consen 65 LATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLE-PVKTIPTGGMPVDGPESRVAAIVASPGRPEF 142 (369)
T ss_dssp TTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEE
T ss_pred CCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEecccccc-ceeecccccccccccCCCceeEEecCCCCEE
Confidence 999999999875443 455666 788877665 68999999999874 5555442 23568888889988866
Q ss_pred EEEeC-CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc----
Q psy4876 434 ASGGN-DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID---- 508 (609)
Q Consensus 434 asgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~---- 508 (609)
+..-. .+.|.+.|..... .................|+|+++++++... .+..|.++|..+++.+..++
T Consensus 143 Vv~lkd~~~I~vVdy~d~~-----~~~~~~i~~g~~~~D~~~dpdgry~~va~~--~sn~i~viD~~~~k~v~~i~~g~~ 215 (369)
T PF02239_consen 143 VVNLKDTGEIWVVDYSDPK-----NLKVTTIKVGRFPHDGGFDPDGRYFLVAAN--GSNKIAVIDTKTGKLVALIDTGKK 215 (369)
T ss_dssp EEEETTTTEEEEEETTTSS-----CEEEEEEE--TTEEEEEE-TTSSEEEEEEG--GGTEEEEEETTTTEEEEEEE-SSS
T ss_pred EEEEccCCeEEEEEecccc-----ccceeeecccccccccccCcccceeeeccc--ccceeEEEeeccceEEEEeecccc
Confidence 66555 4888888877652 122223233456678999999987777653 56688888887765443321
Q ss_pred ---------------------------------------------------CCCCeEEEEEcCCCCeEEEEE--ecCCCe
Q psy4876 509 ---------------------------------------------------TKSQVCALLWNSDYKELVSAH--GFAQNQ 535 (609)
Q Consensus 509 ---------------------------------------------------~~~~v~sl~~s~~g~~l~~~s--G~~dg~ 535 (609)
..+.-.-+..+|+++++.+.. +...++
T Consensus 216 p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~ 295 (369)
T PF02239_consen 216 PHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADT 295 (369)
T ss_dssp BEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-
T ss_pred ccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCce
Confidence 111112345688888888751 234689
Q ss_pred EEEEECCCCceEEEEeC-CCCCEEEEEEeCCCCEEEEEECC--CCEEEEEcCCCccchhhhh
Q psy4876 536 LIIWKYPSLVKVAELHG-HSARVLNLAMSPDETTVLSAGAD--ETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 536 I~Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~s~s~D--g~I~iWdl~~~~~~~k~~~ 594 (609)
|.|+|..+.+.+..+.. -..++.++.|++||+.+..+..| +.|.+||-.+.+..+....
T Consensus 296 v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 296 VQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPV 357 (369)
T ss_dssp EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE-
T ss_pred EEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEe
Confidence 99999999988777742 22359999999999977655444 3699999999887765553
|
... |
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=130.51 Aligned_cols=263 Identities=14% Similarity=0.167 Sum_probs=193.0
Q ss_pred CCCCeEEEEEccCC--CEEEEEeCCCeEEEEeCCCCeeEEEe------cCCCCceEEEEecCCEEEEEecCCeEEEEEcC
Q psy4876 334 GNENVCSVAWIQEG--YMLGVGTSLGTVQLWDVSAKKKCRTM------DGHDVRVGALAWNTYILSSGSRCGNIVHHDVR 405 (609)
Q Consensus 334 h~~~V~~v~~spdg--~~Lasgs~dg~I~iwd~~~~~~~~~l------~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~ 405 (609)
....|++++|.-++ ..|...+.+..+..+++........+ ......|..+..-...|++|-.+|.+.+|...
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEecc
Confidence 45678889998766 44544446677887777766554443 34556777777766778888999999999988
Q ss_pred CCC---eeEEEEccCCCCeEEEEEccC-CCEEEEEeCC--CcEEEEeCCCCCCCCCccceEe-ecC--CcccEEEEEEcC
Q psy4876 406 SRD---HKVALLQNHTQEVCGLKWSPD-GRYLASGGND--NLLNIWSGVPGQHTFSTQPIHS-LSR--HQAAVKAIAWCP 476 (609)
Q Consensus 406 ~~~---~~~~~~~~h~~~V~~l~~spd-g~~lasgs~D--g~I~iwd~~~~~~~~~~~~~~~-~~~--h~~~V~~l~~sp 476 (609)
.+. .....+..+ ..+..+.-++. ...+|+|+.. +.+.|||+.+....+..+.+.. .-+ -.-+++++.|-+
T Consensus 134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence 543 123333333 44666666663 4456779988 8899999997733222221110 000 123567888887
Q ss_pred CC-CcEEEEEeccCCCeEEEEECCCC-ceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE-EeC
Q psy4876 477 WS-PNVLASGGGTADRHIYFWNVSSG-ACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE-LHG 552 (609)
Q Consensus 477 ~~-~~llasggGs~Dg~I~iwd~~t~-~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~-l~~ 552 (609)
.. .+.|+++ +.-+.+++||.+.+ .++..+... ..++++...|+++.+++ |..-+.+..||.+.+..+.. +.+
T Consensus 213 g~~~~~fat~--T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~--gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 213 GSPNYKFATI--TRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYT--GNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred CCCCceEEEE--ecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEE--ecccchhheecccCceeeccccCC
Confidence 52 4567776 47899999999965 467777654 58999999999999999 66899999999999998877 788
Q ss_pred CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhhhcccccc
Q psy4876 553 HSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEIKNNASKF 601 (609)
Q Consensus 553 h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~~~~~~~~ 601 (609)
-.+.|.+|..+|.+++|+++|-|..|||+|+.+.....+.-.+.+.+..
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~i 337 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFI 337 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEE
Confidence 9999999999999999999999999999999998888877777765553
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-10 Score=122.37 Aligned_cols=257 Identities=13% Similarity=0.183 Sum_probs=172.8
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeC----CCeEEEEeCCCC--e--eEEEecCCCCceEEEEe--cCCEEEEE
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTS----LGTVQLWDVSAK--K--KCRTMDGHDVRVGALAW--NTYILSSG 393 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~----dg~I~iwd~~~~--~--~~~~l~~h~~~V~~l~~--~~~~L~sg 393 (609)
+.+..+..+........++++|++++|++... +|.|..|++... + .+............++. ++.+|+++
T Consensus 25 g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 25 GTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp TEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEE
T ss_pred CCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEE
Confidence 66666665545677788999999999999877 468999988764 2 33333323344556777 57777777
Q ss_pred e-cCCeEEEEEcCCCCeeEEE---Ec----------cCCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCCCCCCccc
Q psy4876 394 S-RCGNIVHHDVRSRDHKVAL---LQ----------NHTQEVCGLKWSPDGRYLASGGN-DNLLNIWSGVPGQHTFSTQP 458 (609)
Q Consensus 394 s-~dg~I~iwd~~~~~~~~~~---~~----------~h~~~V~~l~~spdg~~lasgs~-Dg~I~iwd~~~~~~~~~~~~ 458 (609)
. .+|.|.++++......... +. .......++.|+|+|+++++... ...|++|++....... ..
T Consensus 105 ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l--~~ 182 (345)
T PF10282_consen 105 NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKL--TP 182 (345)
T ss_dssp ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TE--EE
T ss_pred EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceE--EE
Confidence 6 5899999999875432222 21 12355788999999998888654 3479999997653111 11
Q ss_pred eEeec-CCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC--CCce--eEEEcC-------CCCeEEEEEcCCCCeEE
Q psy4876 459 IHSLS-RHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS--SGAC--LDSIDT-------KSQVCALLWNSDYKELV 526 (609)
Q Consensus 459 ~~~~~-~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~--t~~~--~~~~~~-------~~~v~sl~~s~~g~~l~ 526 (609)
...+. .....-..++|+|+++.++++. ..++.|.+|++. ++.. +..+.. ......|.++|+|++|+
T Consensus 183 ~~~~~~~~G~GPRh~~f~pdg~~~Yv~~--e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ly 260 (345)
T PF10282_consen 183 VDSIKVPPGSGPRHLAFSPDGKYAYVVN--ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLY 260 (345)
T ss_dssp EEEEECSTTSSEEEEEE-TTSSEEEEEE--TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEE
T ss_pred eeccccccCCCCcEEEEcCCcCEEEEec--CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEE
Confidence 22222 2344578999999998888876 479999999998 4432 223321 12578999999999999
Q ss_pred EEEecCCCeEEEEECC--CC--ceEEEEeCCCCCEEEEEEeCCCCEEEEEEC-CCCEEEEEcCC
Q psy4876 527 SAHGFAQNQLIIWKYP--SL--VKVAELHGHSARVLNLAMSPDETTVLSAGA-DETLRLWKIFE 585 (609)
Q Consensus 527 ~~sG~~dg~I~Iwd~~--~~--~~~~~l~~h~~~V~~l~~spdg~~L~s~s~-Dg~I~iWdl~~ 585 (609)
++.. ..+.|.+|++. ++ +.+..+........+++++|+|++|+++.. ++.|.+|++..
T Consensus 261 vsnr-~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 261 VSNR-GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEC-TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred EEec-cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 8754 68899999983 23 334444434455899999999999998874 67899998853
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-13 Score=140.00 Aligned_cols=218 Identities=20% Similarity=0.264 Sum_probs=163.6
Q ss_pred eEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEcc--CCCEEEEEeCCCcEEE
Q psy4876 369 KCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSP--DGRYLASGGNDNLLNI 444 (609)
Q Consensus 369 ~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~lasgs~Dg~I~i 444 (609)
+...+.||.+.|.++.| +|.+|++|+.|-.+.|||.-........-.+|...|.+++|-| +.+++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34678899999999999 6899999999999999999866444445569999999999999 5678999999999999
Q ss_pred EeCCCCCC----CCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc-eeEEEc-------CC--
Q psy4876 445 WSGVPGQH----TFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA-CLDSID-------TK-- 510 (609)
Q Consensus 445 wd~~~~~~----~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~-~~~~~~-------~~-- 510 (609)
+|+...+. .....+.+.+..|...|+.|+-.|++++.+.+++ .||+|+-+|++... |..... ..
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsas--EDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSAS--EDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEec--CCcceeeecccCCccCCccccccHHHHHhchh
Confidence 99985221 1122566677889999999999999999998884 99999999998632 111111 11
Q ss_pred -CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC--------C----------ceEEEE-eCCC-----------CCEEE
Q psy4876 511 -SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS--------L----------VKVAEL-HGHS-----------ARVLN 559 (609)
Q Consensus 511 -~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~--------~----------~~~~~l-~~h~-----------~~V~~ 559 (609)
-...++..+|...+++++ |..+--.++||.+. + .++.-+ .+|- ..++.
T Consensus 200 lielk~ltisp~rp~~laV-GgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAV-GGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hheeeeeeecCCCCceEEe-cCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 246788999988776665 55889999999421 1 112222 2332 12577
Q ss_pred EEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 560 LAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 560 l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
+.|+|+|.-|...-....|+++|+..++..
T Consensus 279 vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred EEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 889999986666656678999999877643
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.7e-13 Score=136.32 Aligned_cols=227 Identities=19% Similarity=0.313 Sum_probs=164.0
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe----------cCCEEEEEecCCeEEEEE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW----------NTYILSSGSRCGNIVHHD 403 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~----------~~~~L~sgs~dg~I~iwd 403 (609)
|...|.|+.|+.+...+.++++ ..+.+|.-.+......+.-...-|....+ ....|+.++.||.+.+.+
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dD-h~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDD-HQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred cceeEEeecccccceEEEeccC-ceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 6677889999988777765555 45555543333322222211111111111 136788899999999887
Q ss_pred cCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEE
Q psy4876 404 VRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 404 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla 483 (609)
-.. .....+..|.+.|.+-.|+|||.-|+++++||.|++|.-. | ....++.....+|.|++|.|+...++.
T Consensus 92 k~~--rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-G------MLRStl~Q~~~~v~c~~W~p~S~~vl~ 162 (737)
T KOG1524|consen 92 KSA--RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-G------MLRSTVVQNEESIRCARWAPNSNSIVF 162 (737)
T ss_pred ccc--hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-c------hHHHHHhhcCceeEEEEECCCCCceEE
Confidence 553 3556778899999999999999999999999999999854 3 233444556778999999999998888
Q ss_pred EEeccCCCeEEEEECCCCceeEEEc-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEE
Q psy4876 484 SGGGTADRHIYFWNVSSGACLDSID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAM 562 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t~~~~~~~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~ 562 (609)
+. .+.+.|=-+.....+-... +.+-|.++.|++....+++ |++|-..+|||. -|..+..-..|+-+|++++|
T Consensus 163 c~----g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~s--gGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~ 235 (737)
T KOG1524|consen 163 CQ----GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIAS--GGEDFRFKIWDA-QGANLFTSAAEEYAITSVAF 235 (737)
T ss_pred ec----CCeEEEeecccccceeEEeccCcEEEEeecCccccceee--cCCceeEEeecc-cCcccccCChhccceeeeee
Confidence 74 5777777776555444454 4568999999999999998 669999999995 46666666789999999999
Q ss_pred eCCCCEEEEEECCCCEE
Q psy4876 563 SPDETTVLSAGADETLR 579 (609)
Q Consensus 563 spdg~~L~s~s~Dg~I~ 579 (609)
.|| +.++.++. +++|
T Consensus 236 npd-~~~~v~S~-nt~R 250 (737)
T KOG1524|consen 236 NPE-KDYLLWSY-NTAR 250 (737)
T ss_pred ccc-cceeeeee-eeee
Confidence 999 55555543 3444
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.3e-12 Score=134.81 Aligned_cols=216 Identities=18% Similarity=0.145 Sum_probs=148.5
Q ss_pred CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEec---CCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCC
Q psy4876 357 GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSR---CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR 431 (609)
Q Consensus 357 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~---dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 431 (609)
..|.+||... ...+.+..+...+.+..| +++.|+..+. +..|++||+.++. ...+..+.+...+++|+|||+
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~--~~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ--RELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC--EEEeccCCCCccCceECCCCC
Confidence 4689999864 445556667788899999 5777777663 3469999998764 233344445566789999999
Q ss_pred EEEE-EeCCC--cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC--eEEEEECCCCceeEE
Q psy4876 432 YLAS-GGNDN--LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR--HIYFWNVSSGACLDS 506 (609)
Q Consensus 432 ~las-gs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg--~I~iwd~~t~~~~~~ 506 (609)
.|+. .+.+| .|++||+.++ . +..+..+......++|+|+|..++++.. .++ .|+++|+.+++....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g------~-~~~lt~~~~~~~~~~~spDG~~l~f~sd--~~g~~~iy~~dl~~g~~~~l 331 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSR------Q-LTRLTNHFGIDTEPTWAPDGKSIYFTSD--RGGRPQIYRVAASGGSAERL 331 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCC------C-eEECccCCCCccceEECCCCCEEEEEEC--CCCCceEEEEECCCCCeEEe
Confidence 7764 45555 5999999876 2 3445555555678899999987777652 333 477788877765433
Q ss_pred EcCCCCeEEEEEcCCCCeEEEEEecC-CCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECC---CCEEEEE
Q psy4876 507 IDTKSQVCALLWNSDYKELVSAHGFA-QNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGAD---ETLRLWK 582 (609)
Q Consensus 507 ~~~~~~v~sl~~s~~g~~l~~~sG~~-dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D---g~I~iWd 582 (609)
.........+.|+|+|++++..++.. ...|.+||+.++... .+. +........|+|||++|+..+.+ +.|.+++
T Consensus 332 t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 332 TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 32333455789999999998875421 236999999877654 333 33345678999999988776653 3577777
Q ss_pred cCCC
Q psy4876 583 IFEK 586 (609)
Q Consensus 583 l~~~ 586 (609)
+...
T Consensus 410 ~~g~ 413 (433)
T PRK04922 410 TDGR 413 (433)
T ss_pred CCCC
Confidence 7554
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-13 Score=135.19 Aligned_cols=190 Identities=14% Similarity=0.233 Sum_probs=135.3
Q ss_pred EEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeee-ecCCCCeEEEEEccCCCE
Q psy4876 273 NLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMD-LEGNENVCSVAWIQEGYM 349 (609)
Q Consensus 273 ~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~h~~~V~~v~~spdg~~ 349 (609)
.+++++.+| +.+++.||++|||++.. ...+.+ ..|...|.++.|+|||++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps---------------------------~~t~l~e~~~~~eV~DL~FS~dgk~ 200 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS---------------------------MLTILEEIAHHAEVKDLDFSPDGKF 200 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc---------------------------chhhhhhHhhcCccccceeCCCCcE
Confidence 568999985 55688999999999765 222223 338899999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEecC--CCCceEEEEe--cC---C--EEEEEecCCeEEEEEcCCCCe----eEEEEcc
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCRTMDG--HDVRVGALAW--NT---Y--ILSSGSRCGNIVHHDVRSRDH----KVALLQN 416 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~--~~---~--~L~sgs~dg~I~iwd~~~~~~----~~~~~~~ 416 (609)
|++-+.| ..+||+++++..+..... .......+.| ++ . +++....-+.|..||+..... .......
T Consensus 201 lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~ 279 (398)
T KOG0771|consen 201 LASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK 279 (398)
T ss_pred EEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh
Confidence 9999998 899999999976665542 2334555666 23 2 222233445666666643321 1111112
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccce-EeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEE
Q psy4876 417 HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPI-HSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYF 495 (609)
Q Consensus 417 h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~-~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~i 495 (609)
-...|.+++.+.||+++|.|+.||.|-|++..+. +.+ ..-+.|...|+.+.|+|+...+.-+. .|..+.+
T Consensus 280 ~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~l------q~~~~vk~aH~~~VT~ltF~Pdsr~~~svS---s~~~~~v 350 (398)
T KOG0771|consen 280 RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSL------QRLQYVKEAHLGFVTGLTFSPDSRYLASVS---SDNEAAV 350 (398)
T ss_pred ccCcceeEEEcCCCcEEEEeccCCcEEEEEecee------eeeEeehhhheeeeeeEEEcCCcCcccccc---cCCceeE
Confidence 2346999999999999999999999999999877 333 33457999999999999987665543 5777766
Q ss_pred EECC
Q psy4876 496 WNVS 499 (609)
Q Consensus 496 wd~~ 499 (609)
..+.
T Consensus 351 ~~l~ 354 (398)
T KOG0771|consen 351 TKLA 354 (398)
T ss_pred EEEe
Confidence 6554
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-11 Score=130.43 Aligned_cols=217 Identities=17% Similarity=0.136 Sum_probs=146.6
Q ss_pred CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEe---cCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCC
Q psy4876 357 GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGS---RCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR 431 (609)
Q Consensus 357 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs---~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 431 (609)
..|.+||.+.... +.+..+...+...+| +|+.|+..+ .+..|.+||+.++. ...+......+..++|+|||+
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~--~~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC--eEEccCCCCCcCCeEECCCCC
Confidence 3789999875443 444556778899999 577777554 23579999998764 223333334455789999999
Q ss_pred EEEEE-eCCC--cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC--eEEEEECCCCceeEE
Q psy4876 432 YLASG-GNDN--LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR--HIYFWNVSSGACLDS 506 (609)
Q Consensus 432 ~lasg-s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg--~I~iwd~~t~~~~~~ 506 (609)
.|+.. +.+| .|++||+.++ . +..+..+...+....|+|+|..++++.. .++ .|+++|+.+++....
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg------~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~--~~g~~~Iy~~d~~~g~~~~l 326 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASG------Q-IRQVTDGRSNNTEPTWFPDSQNLAYTSD--QAGRPQVYKVNINGGAPQRI 326 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCC------C-EEEccCCCCCcCceEECCCCCEEEEEeC--CCCCceEEEEECCCCCeEEe
Confidence 88865 3344 5999999876 2 3344445556788999999987776652 333 566667777655433
Q ss_pred EcCCCCeEEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCC---EEEEE
Q psy4876 507 IDTKSQVCALLWNSDYKELVSAHGF-AQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADET---LRLWK 582 (609)
Q Consensus 507 ~~~~~~v~sl~~s~~g~~l~~~sG~-~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~---I~iWd 582 (609)
...........|+|+|++++.++.. ....|.+||+.++... .+... .......|+|||++|+.++.|+. +.+++
T Consensus 327 t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 327 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 3333456678999999999886531 2246889999877643 33321 23456789999999999998875 67777
Q ss_pred cCCCc
Q psy4876 583 IFEKV 587 (609)
Q Consensus 583 l~~~~ 587 (609)
+.+..
T Consensus 405 ~~G~~ 409 (429)
T PRK03629 405 TDGRF 409 (429)
T ss_pred CCCCC
Confidence 75544
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-11 Score=118.78 Aligned_cols=274 Identities=16% Similarity=0.276 Sum_probs=183.8
Q ss_pred EEEEEecCCC--eEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 272 LNLIDWSHFN--VLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 272 v~~l~wsp~~--lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
|.-|.|..|. ++. ...++.|.+|++.. . +-.+.+. ..+.+.+++|||||
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Q-------------------------p--ew~ckIdeg~agls~~~WSPdg 103 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQ-------------------------P--EWYCKIDEGQAGLSSISWSPDG 103 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeec-------------------------c--eeEEEeccCCCcceeeeECCCc
Confidence 3448898885 444 45578999999976 2 3344555 77899999999999
Q ss_pred C-EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEec-----------------------------
Q psy4876 348 Y-MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSR----------------------------- 395 (609)
Q Consensus 348 ~-~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~----------------------------- 395 (609)
+ .|.+..-+-.|.||.+.+.+... +......+..++| +|++.+..++
T Consensus 104 rhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dlt 182 (447)
T KOG4497|consen 104 RHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLT 182 (447)
T ss_pred ceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccccc
Confidence 5 45556668899999998755433 3333444566666 4555554432
Q ss_pred -------CCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC----------------
Q psy4876 396 -------CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQH---------------- 452 (609)
Q Consensus 396 -------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~---------------- 452 (609)
+..+.+||---. ..+..+ .-.-.+..++|+|.+++|++|+.|+.++|.+--+-+.
T Consensus 183 gieWsPdg~~laVwd~~Le-ykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~ 260 (447)
T KOG4497|consen 183 GIEWSPDGNWLAVWDNVLE-YKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLH 260 (447)
T ss_pred CceECCCCcEEEEecchhh-heeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhh
Confidence 123555654321 111111 1234688899999999999999999988765321100
Q ss_pred ---------------------------C-----------CCccceEeec------CCcccEEEEEEcCCCCcEEEEEecc
Q psy4876 453 ---------------------------T-----------FSTQPIHSLS------RHQAAVKAIAWCPWSPNVLASGGGT 488 (609)
Q Consensus 453 ---------------------------~-----------~~~~~~~~~~------~h~~~V~~l~~sp~~~~llasggGs 488 (609)
. .....++.++ ...-.+.-++|++|. .++++-...
T Consensus 261 ~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~ 339 (447)
T KOG4497|consen 261 LLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDK 339 (447)
T ss_pred hhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCC
Confidence 0 0000111111 122346678999987 566665434
Q ss_pred CCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCE
Q psy4876 489 ADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETT 568 (609)
Q Consensus 489 ~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~ 568 (609)
.-..+-+||++..+.-..+....+|....|+|....|+.++| ...+++|...-...+ ...+..-.|..+.|+-+|..
T Consensus 340 ~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg--~srLY~W~psg~~~V-~vP~~GF~i~~l~W~~~g~~ 416 (447)
T KOG4497|consen 340 YPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTG--KSRLYFWAPSGPRVV-GVPKKGFNIQKLQWLQPGEF 416 (447)
T ss_pred CCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcC--CceEEEEcCCCceEE-ecCCCCceeeeEEecCCCcE
Confidence 557899999998887777778889999999999999999875 566999986543333 33444567999999999999
Q ss_pred EEEEECCCCEE
Q psy4876 569 VLSAGADETLR 579 (609)
Q Consensus 569 L~s~s~Dg~I~ 579 (609)
++-.+.|....
T Consensus 417 i~l~~kDafc~ 427 (447)
T KOG4497|consen 417 IVLCGKDAFCV 427 (447)
T ss_pred EEEEcCCceEE
Confidence 99999986443
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.1e-12 Score=120.51 Aligned_cols=142 Identities=18% Similarity=0.367 Sum_probs=105.9
Q ss_pred CeEEEEEcCCCCeeEEEEcc-CCCCeEEEEEccCCCEEEEE--eCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEE
Q psy4876 397 GNIVHHDVRSRDHKVALLQN-HTQEVCGLKWSPDGRYLASG--GNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473 (609)
Q Consensus 397 g~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~spdg~~lasg--s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~ 473 (609)
|...+|.++..+..+..+.. ..++|.+++|+|+|+.||+. ..++.|.+||++ + ..+..+. ...+..+.
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~------~~i~~~~--~~~~n~i~ 107 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-G------KKIFSFG--TQPRNTIS 107 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-c------cEeEeec--CCCceEEE
Confidence 34555555443334444433 34579999999999987665 356799999997 3 5666663 56778999
Q ss_pred EcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEec----CCCeEEEEECCCCceEEE
Q psy4876 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGF----AQNQLIIWKYPSLVKVAE 549 (609)
Q Consensus 474 ~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~----~dg~I~Iwd~~~~~~~~~ 549 (609)
|+|+|..+++.|.|...|.|.+||+++.+.+...++. .+..++|+|+|+++++++.. .|+.++||++. |+.+..
T Consensus 108 wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 108 WSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred ECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 9999987777665556789999999988888877654 47899999999999998643 48899999984 655544
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.2e-11 Score=124.72 Aligned_cols=249 Identities=14% Similarity=0.152 Sum_probs=162.0
Q ss_pred EEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEE
Q psy4876 275 IDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGV 352 (609)
Q Consensus 275 l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Las 352 (609)
+.+++|+ +++++.||.|.++|+.+ .+ .+.++.......++++++||+++++
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~-------------------------~~--~v~~i~~G~~~~~i~~s~DG~~~~v 94 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLAT-------------------------GK--VVATIKVGGNPRGIAVSPDGKYVYV 94 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTS-------------------------SS--EEEEEE-SSEEEEEEE--TTTEEEE
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCc-------------------------cc--EEEEEecCCCcceEEEcCCCCEEEE
Confidence 6788986 66678899999999988 44 4445554566789999999999987
Q ss_pred Ee-CCCeEEEEeCCCCeeEEEecCC-------CCceEEEEe--cCC-EEEEEecCCeEEEEEcCCCCeeEEEEccCCCCe
Q psy4876 353 GT-SLGTVQLWDVSAKKKCRTMDGH-------DVRVGALAW--NTY-ILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEV 421 (609)
Q Consensus 353 gs-~dg~I~iwd~~~~~~~~~l~~h-------~~~V~~l~~--~~~-~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 421 (609)
+. ..+.|.|+|.++.+.++.+... ..++..+.. ... ++++.-+.+.|.+.|..................
T Consensus 95 ~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~ 174 (369)
T PF02239_consen 95 ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFP 174 (369)
T ss_dssp EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTE
T ss_pred EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccc
Confidence 75 5789999999999988877542 346666655 234 555555568999989876543333333455667
Q ss_pred EEEEEccCCCEEEEE-eCCCcEEEEeCCCCCCC-----------------------------------------------
Q psy4876 422 CGLKWSPDGRYLASG-GNDNLLNIWSGVPGQHT----------------------------------------------- 453 (609)
Q Consensus 422 ~~l~~spdg~~lasg-s~Dg~I~iwd~~~~~~~----------------------------------------------- 453 (609)
....|+|++++++++ ..++.|-++|..++...
T Consensus 175 ~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~ 254 (369)
T PF02239_consen 175 HDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVH 254 (369)
T ss_dssp EEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred cccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccc
Confidence 889999999987765 34567777777654210
Q ss_pred --CCccceEeecCCcccEEEEEEcCCCCcEEEE-EeccCCCeEEEEECCCCceeEEEcCCC--CeEEEEEcCCCCeEEEE
Q psy4876 454 --FSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS-GGGTADRHIYFWNVSSGACLDSIDTKS--QVCALLWNSDYKELVSA 528 (609)
Q Consensus 454 --~~~~~~~~~~~h~~~V~~l~~sp~~~~llas-ggGs~Dg~I~iwd~~t~~~~~~~~~~~--~v~sl~~s~~g~~l~~~ 528 (609)
...+.+.++...... .-+..+|+++++.+. -.+...+.|.++|.++.+.+..+.... .+..+.|+++|+++.++
T Consensus 255 d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS 333 (369)
T PF02239_consen 255 DDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVS 333 (369)
T ss_dssp TTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEE
T ss_pred hhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEE
Confidence 011222333322333 456679999888776 111356899999999998888876544 49999999999999998
Q ss_pred EecCCCeEEEEECCCCceEEEEe
Q psy4876 529 HGFAQNQLIIWKYPSLVKVAELH 551 (609)
Q Consensus 529 sG~~dg~I~Iwd~~~~~~~~~l~ 551 (609)
....++.|.|||..+.+.+..+.
T Consensus 334 ~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 334 VWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EE--TTEEEEEETTTTEEEEEEE
T ss_pred EecCCCEEEEEECCCcEEEEEEE
Confidence 77666799999999999998886
|
... |
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.1e-13 Score=135.05 Aligned_cols=256 Identities=19% Similarity=0.228 Sum_probs=193.8
Q ss_pred eeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEe-cCCCCceEEEEe----cCCEEEEEecCCeEEEEE
Q psy4876 330 MDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTM-DGHDVRVGALAW----NTYILSSGSRCGNIVHHD 403 (609)
Q Consensus 330 ~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~----~~~~L~sgs~dg~I~iwd 403 (609)
..+. |.+.|..|.|...|..|++|+.|..|.+||...++....+ .+|...|....| +...+++++.||.+++=.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 3455 9999999999999999999999999999999988766555 468888887777 357889999999999887
Q ss_pred cCCCCee--EEEEccCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcc---cEEEEEEcCC
Q psy4876 404 VRSRDHK--VALLQNHTQEVCGLKWSPDG-RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA---AVKAIAWCPW 477 (609)
Q Consensus 404 ~~~~~~~--~~~~~~h~~~V~~l~~spdg-~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~---~V~~l~~sp~ 477 (609)
+...... ...+..|.+.|.-++.-|+. .-|.+++.|+.|.-+|++...... .+..-..+.. ....++..|.
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~---~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE---KFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc---eeeeeccCCccceeeeeEecCCC
Confidence 7644322 45567899999999999955 458999999999999999874321 1112222333 5678999999
Q ss_pred CCcEEEEEeccCCCeEEEEECCCCce------eEEE-------cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-
Q psy4876 478 SPNVLASGGGTADRHIYFWNVSSGAC------LDSI-------DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS- 543 (609)
Q Consensus 478 ~~~llasggGs~Dg~I~iwd~~t~~~------~~~~-------~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~- 543 (609)
..+.+++|| .|..+++||.+.-.. +..+ .....|++++|+.++..|++ .+.|-.|++|.-..
T Consensus 293 nt~~faVgG--~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa--SYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 293 NTNEFAVGG--SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA--SYNDEDIYLFNKSMG 368 (559)
T ss_pred CccccccCC--hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee--eecccceEEeccccc
Confidence 988999986 899999999874221 1222 12347999999998888888 45799999995321
Q ss_pred -C----------ceEE-EEeCCCC--CEEEEEE-eCCCCEEEEEECCCCEEEEEcCCCccchhh
Q psy4876 544 -L----------VKVA-ELHGHSA--RVLNLAM-SPDETTVLSAGADETLRLWKIFEKVKSKKK 592 (609)
Q Consensus 544 -~----------~~~~-~l~~h~~--~V~~l~~-spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~ 592 (609)
| ..+. .++||.. .|.++-| -|...++++|+.-|.|.||+-.+++...-.
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M 432 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM 432 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh
Confidence 2 1222 3678864 4667764 678899999999999999998887765443
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=134.70 Aligned_cols=163 Identities=20% Similarity=0.369 Sum_probs=124.1
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec---CCCCeEEEEEccCC-CEEEEEeCCC
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE---GNENVCSVAWIQEG-YMLGVGTSLG 357 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---h~~~V~~v~~spdg-~~Lasgs~dg 357 (609)
++.+=.-|.|++.|... ..+..+...+ ....|+|+.|-|.+ ..++++..+|
T Consensus 188 llIGf~tGqvq~idp~~-------------------------~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sG 242 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPIN-------------------------FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASG 242 (636)
T ss_pred eEEeeccCceEEecchh-------------------------hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecC
Confidence 66666678888888755 2222222211 45789999999966 5666788899
Q ss_pred eEEEEeCCC--------------CeeEEE--------------ecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCC
Q psy4876 358 TVQLWDVSA--------------KKKCRT--------------MDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSR 407 (609)
Q Consensus 358 ~I~iwd~~~--------------~~~~~~--------------l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~ 407 (609)
.+.+||..- +..... +.-..+.|..++| ++.+|++.+.||.++|+|+.+.
T Consensus 243 nlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~ 322 (636)
T KOG2394|consen 243 NLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ 322 (636)
T ss_pred ceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH
Confidence 999997631 111111 1112346667777 6899999999999999999985
Q ss_pred CeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcC
Q psy4876 408 DHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476 (609)
Q Consensus 408 ~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 476 (609)
+.+..++..-+...|++|||||++|++|++|..|.||.+... +.+..-++|..+|..|+|.|
T Consensus 323 -eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er------RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 323 -ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER------RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred -HHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc------eEEEeccccccceeeEeecc
Confidence 466666666788999999999999999999999999999887 78888899999999999984
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.4e-11 Score=123.13 Aligned_cols=286 Identities=13% Similarity=0.170 Sum_probs=200.3
Q ss_pred EEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEE
Q psy4876 272 LNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYML 350 (609)
Q Consensus 272 v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~L 350 (609)
++..++|++| ++|.+.+..|.|++..+ .. .+.+.... .++++.|+|.|.+|
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~-------------------------~~--~~lt~~~~-~~~~L~fSP~g~yL 88 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIAT-------------------------LK--VVLCVELK-KTYDLLFSPKGNYL 88 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccC-------------------------Cc--EEEEeccc-eeeeeeeccccccc
Confidence 6678889987 88999999999999987 43 22233223 88999999999998
Q ss_pred EEE-----eC-----CCeEEEEeCCCCeeEEEecCCCCceEEEEec-CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 351 GVG-----TS-----LGTVQLWDVSAKKKCRTMDGHDVRVGALAWN-TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 351 asg-----s~-----dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
.+- .. .-.+.+|+++++.....+......-+++.|. ...|++--..+.+++|++......... -|..
T Consensus 89 ~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~k--l~~~ 166 (566)
T KOG2315|consen 89 LTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHK--LSVS 166 (566)
T ss_pred ccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeee--eecc
Confidence 762 11 2357899999865554444322222577774 334444445678999999875433333 3678
Q ss_pred CeEEEEEccCCC--EEEE-----EeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCC--
Q psy4876 420 EVCGLKWSPDGR--YLAS-----GGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD-- 490 (609)
Q Consensus 420 ~V~~l~~spdg~--~las-----gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~D-- 490 (609)
.|..+.+||.+. .+|+ +|.-..|+||....... ..++..-.-....--.+.|++-|..||+.....-|
T Consensus 167 ~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~---~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 167 GITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ---HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred ceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc---cchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 899999999643 3443 34556899998763211 11211111122233468899888777766542233
Q ss_pred -------CeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEe
Q psy4876 491 -------RHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMS 563 (609)
Q Consensus 491 -------g~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~s 563 (609)
.++++.++....+...+...++|.++.|++++++++++.|+.--.+.|||++ +..+..+ -+++=+++-|+
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fn 320 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFN 320 (566)
T ss_pred CccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEEC
Confidence 4689999986677777888899999999999999999999999999999975 4555554 35667889999
Q ss_pred CCCCEEEEEECC---CCEEEEEcCCCccchhhh
Q psy4876 564 PDETTVLSAGAD---ETLRLWKIFEKVKSKKKE 593 (609)
Q Consensus 564 pdg~~L~s~s~D---g~I~iWdl~~~~~~~k~~ 593 (609)
|.|++|+.||-+ |.|-|||+.+.+...+.+
T Consensus 321 p~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~ 353 (566)
T KOG2315|consen 321 PHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK 353 (566)
T ss_pred CCCCEEEEeecCCCCCceEEEeccchhhccccc
Confidence 999999998865 789999999855544433
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-11 Score=120.02 Aligned_cols=273 Identities=17% Similarity=0.277 Sum_probs=195.3
Q ss_pred EEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEE-EE
Q psy4876 275 IDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYML-GV 352 (609)
Q Consensus 275 l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~L-as 352 (609)
..|||+| .+|...+-.+.|-|.++ -++.++.. .-+.|.-+.|..|..++ .+
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~t-------------------------lq~~qlf~--cldki~yieW~ads~~ilC~ 66 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSET-------------------------LQLHQLFL--CLDKIVYIEWKADSCHILCV 66 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccch-------------------------hhHHHHHH--HHHHhhheeeeccceeeeee
Confidence 6789986 88888888999999887 33333322 23667889999988554 45
Q ss_pred EeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cC-CEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccC
Q psy4876 353 GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NT-YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPD 429 (609)
Q Consensus 353 gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~-~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 429 (609)
...++.|.+|++...+-...+......+..++| +| ++|.+..-+-.|.+|.+.+.. ...+.-.+..+.+++|+||
T Consensus 67 ~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~~~~~~pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 67 AYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--GYLLPHPKTNVKGYAFHPD 144 (447)
T ss_pred eeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--eEEecccccCceeEEECCC
Confidence 677889999999998888899999999999999 45 677888889999999998753 3333334455688999999
Q ss_pred CCEEEEEeC------------------------------------CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEE
Q psy4876 430 GRYLASGGN------------------------------------DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473 (609)
Q Consensus 430 g~~lasgs~------------------------------------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~ 473 (609)
|++.+.++. ++.+.+||.--. -.+..+. ..-.+..++
T Consensus 145 g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le------ykv~aYe-~~lG~k~v~ 217 (447)
T KOG4497|consen 145 GQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE------YKVYAYE-RGLGLKFVE 217 (447)
T ss_pred CceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh------heeeeee-eccceeEEE
Confidence 998877653 123444442211 1111121 224688999
Q ss_pred EcCCCCcEEEEEeccCCCeEEEEECCCCce--------------------------------------------------
Q psy4876 474 WCPWSPNVLASGGGTADRHIYFWNVSSGAC-------------------------------------------------- 503 (609)
Q Consensus 474 ~sp~~~~llasggGs~Dg~I~iwd~~t~~~-------------------------------------------------- 503 (609)
|+|.+ .+++.| +.|+.+++.|--+.+.
T Consensus 218 wsP~~-qflavG--syD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~ 294 (447)
T KOG4497|consen 218 WSPCN-QFLAVG--SYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESET 294 (447)
T ss_pred ecccc-ceEEee--ccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchh
Confidence 99976 577776 5898888765322100
Q ss_pred ----------eEEEc-------CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCC
Q psy4876 504 ----------LDSID-------TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDE 566 (609)
Q Consensus 504 ----------~~~~~-------~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg 566 (609)
+..++ ....+.-++|++|..++++-....-+.+-+||+...+....+. ...+|....|+|..
T Consensus 295 ~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~ 373 (447)
T KOG4497|consen 295 IYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGR 373 (447)
T ss_pred hhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCC
Confidence 00011 1124667899999999999766667889999998877655553 34679999999999
Q ss_pred CEEEEEECCCCEEEEEcCCCc
Q psy4876 567 TTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 567 ~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
..|+.+.....+++|......
T Consensus 374 prL~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 374 PRLVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred ceEEEEcCCceEEEEcCCCce
Confidence 999988888889999987743
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-11 Score=129.62 Aligned_cols=213 Identities=17% Similarity=0.143 Sum_probs=139.4
Q ss_pred CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecC---CeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCC
Q psy4876 357 GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRC---GNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR 431 (609)
Q Consensus 357 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 431 (609)
..|.+||.. +...+.+..+...+.+.+| +++.|+..+.+ ..|.+||+.++.. ..+....+.+.+.+|+|||+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 367777764 4555556667888999999 57777766542 4599999987642 23333445567899999999
Q ss_pred EEEE-EeCCCcEEEEe--CCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEE--ECCCCceeEE
Q psy4876 432 YLAS-GGNDNLLNIWS--GVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW--NVSSGACLDS 506 (609)
Q Consensus 432 ~las-gs~Dg~I~iwd--~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iw--d~~t~~~~~~ 506 (609)
.|+. .+.+|...||. +..+ ....+..+...+....|+|||..+++++. .++...+| ++.++.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~-------~~~~lt~~~~~~~~~~wSpDG~~l~f~s~--~~g~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGS-------GLRRLTQSSGIDTEPFFSPDGRSIYFTSD--RGGAPQIYRMPASGGAAQRV 323 (427)
T ss_pred EEEEEEccCCCceEEEEECCCC-------CcEECCCCCCCCcCeEEcCCCCEEEEEec--CCCCcEEEEEECCCCceEEE
Confidence 8874 56677756555 4433 34455556556677899999988776642 34555555 5555543332
Q ss_pred EcCCCCeEEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCC-C--EEEEE
Q psy4876 507 IDTKSQVCALLWNSDYKELVSAHGF-AQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADE-T--LRLWK 582 (609)
Q Consensus 507 ~~~~~~v~sl~~s~~g~~l~~~sG~-~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg-~--I~iWd 582 (609)
...........|+|+|++++.++.. ....|.+||+.+++... +..+ .......|+|||+.|+.++.++ . +.+.+
T Consensus 324 t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~ 401 (427)
T PRK02889 324 TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVS 401 (427)
T ss_pred ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEE
Confidence 2222334568899999999876531 12369999998876543 3222 3346789999999988877654 3 44444
Q ss_pred c
Q psy4876 583 I 583 (609)
Q Consensus 583 l 583 (609)
+
T Consensus 402 ~ 402 (427)
T PRK02889 402 S 402 (427)
T ss_pred C
Confidence 4
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.42 E-value=9e-11 Score=126.57 Aligned_cols=217 Identities=17% Similarity=0.153 Sum_probs=141.3
Q ss_pred CCCCeEEEEEccCCCEEEEEeCC---CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEE-EEecCC--eEEEEEcC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSL---GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILS-SGSRCG--NIVHHDVR 405 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~-sgs~dg--~I~iwd~~ 405 (609)
+...+.+.+|+|||++||.+..+ ..|.+||+.+++... +..+...+.+++| ++..|+ +.+.++ .|++||+.
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~ 266 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD 266 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence 45678899999999999987654 479999998875543 3335556667888 566554 455544 58888988
Q ss_pred CCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCC-C--cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEE
Q psy4876 406 SRDHKVALLQNHTQEVCGLKWSPDGRYLASGGND-N--LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 406 ~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~D-g--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 482 (609)
++. ...+..+........|+|||++|+.++.. + .|++||+.++ . ...+..+...+..+.|+|++..++
T Consensus 267 ~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~------~-~~~l~~~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 267 GKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG------E-VRRLTFRGGYNASPSWSPDGDLIA 337 (417)
T ss_pred CCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC------C-EEEeecCCCCccCeEECCCCCEEE
Confidence 753 34444455555678999999988876653 3 5888888765 2 234444556677889999998777
Q ss_pred EEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCC-CeEEEEECCCCceEEEEeCCCCCEEEEE
Q psy4876 483 ASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQ-NQLIIWKYPSLVKVAELHGHSARVLNLA 561 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~d-g~I~Iwd~~~~~~~~~l~~h~~~V~~l~ 561 (609)
++........|.+||+.++... .+..........|+|+++.|+..+.... ..+.+.+. ++.....+..+.+.+..++
T Consensus 338 ~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~ 415 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPA 415 (417)
T ss_pred EEEccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCC
Confidence 7653111237999999876543 3333334456789999999988653221 23555553 3444455544444455444
Q ss_pred E
Q psy4876 562 M 562 (609)
Q Consensus 562 ~ 562 (609)
|
T Consensus 416 w 416 (417)
T TIGR02800 416 W 416 (417)
T ss_pred C
Confidence 4
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-11 Score=123.38 Aligned_cols=219 Identities=17% Similarity=0.288 Sum_probs=167.9
Q ss_pred EEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC-CEEEEE
Q psy4876 275 IDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG-YMLGVG 353 (609)
Q Consensus 275 l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg-~~Lasg 353 (609)
+....+-++++-.+|.+.+|..+.+.. .-..+..+.....+..|.-++.. ..+|+|
T Consensus 111 l~~~dg~Litc~~sG~l~~~~~k~~d~-----------------------hss~l~~la~g~g~~~~r~~~~~p~Iva~G 167 (412)
T KOG3881|consen 111 LKLADGTLITCVSSGNLQVRHDKSGDL-----------------------HSSKLIKLATGPGLYDVRQTDTDPYIVATG 167 (412)
T ss_pred hhhcCCEEEEEecCCcEEEEeccCCcc-----------------------ccccceeeecCCceeeeccCCCCCceEecC
Confidence 333334488888999999999986210 02233344434667777777765 456668
Q ss_pred eCC--CeEEEEeCCCCeeEEEecCC---------CCceEEEEe-c---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCC
Q psy4876 354 TSL--GTVQLWDVSAKKKCRTMDGH---------DVRVGALAW-N---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHT 418 (609)
Q Consensus 354 s~d--g~I~iwd~~~~~~~~~l~~h---------~~~V~~l~~-~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 418 (609)
+.. ..+.|||++..+.+..-+.- .-.++.+.| . ...|++++.-+.+++||.+.+..++..+.--.
T Consensus 168 Gke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E 247 (412)
T KOG3881|consen 168 GKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE 247 (412)
T ss_pred chhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecccc
Confidence 888 78999999987655543321 234566777 2 57899999999999999998888888888888
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEEC
Q psy4876 419 QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 419 ~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~ 498 (609)
..|+++...|+|+++++|..-+.+..||++.+. .....+.+-.+.|++|..+|.+ .+++++| -|+.|+|+|+
T Consensus 248 ~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k-----l~g~~~kg~tGsirsih~hp~~-~~las~G--LDRyvRIhD~ 319 (412)
T KOG3881|consen 248 NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK-----LLGCGLKGITGSIRSIHCHPTH-PVLASCG--LDRYVRIHDI 319 (412)
T ss_pred CcceeeeecCCCcEEEEecccchhheecccCce-----eeccccCCccCCcceEEEcCCC-ceEEeec--cceeEEEeec
Confidence 999999999999999999999999999999883 2334478889999999999976 4777775 8999999999
Q ss_pred CCCceeEEEcCCCCeEEEEEcCCCCe
Q psy4876 499 SSGACLDSIDTKSQVCALLWNSDYKE 524 (609)
Q Consensus 499 ~t~~~~~~~~~~~~v~sl~~s~~g~~ 524 (609)
.+.+++...-..+.++.+.+.++-+.
T Consensus 320 ktrkll~kvYvKs~lt~il~~~~~n~ 345 (412)
T KOG3881|consen 320 KTRKLLHKVYVKSRLTFILLRDDVNI 345 (412)
T ss_pred ccchhhhhhhhhccccEEEecCCccc
Confidence 99888888777888888888665443
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.6e-11 Score=124.87 Aligned_cols=279 Identities=14% Similarity=0.131 Sum_probs=190.4
Q ss_pred EEEEEecCCC--eEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHFN--VLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~~--lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
.+.|..+||| ++| |..--.|++||+.. ..+..-..+ ....|.-.-.+.|-.
T Consensus 54 st~ik~s~DGqY~lAtG~YKP~ikvydlan-------------------------LSLKFERhl-Dae~V~feiLsDD~S 107 (703)
T KOG2321|consen 54 STRIKVSPDGQYLLATGTYKPQIKVYDLAN-------------------------LSLKFERHL-DAEVVDFEILSDDYS 107 (703)
T ss_pred cceeEecCCCcEEEEecccCCceEEEEccc-------------------------ceeeeeecc-cccceeEEEeccchh
Confidence 4568888997 444 55678999999987 222211111 234455555555556
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEE
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKW 426 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 426 (609)
.++.-..|..|.+-... |..... . -...-..++++ ..-|++++....|+-+++..+ ..+..+....+.++++..
T Consensus 108 K~v~L~~DR~IefHak~-G~hy~~-R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqG-rfL~P~~~~~~~lN~v~i 183 (703)
T KOG2321|consen 108 KSVFLQNDRTIEFHAKY-GRHYRT-R-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG-RFLNPFETDSGELNVVSI 183 (703)
T ss_pred hheEeecCceeeehhhc-Ceeeee-e-cCcCCccccccCCCccEEEeecCcceEEEEcccc-ccccccccccccceeeee
Confidence 66666677777664322 221111 1 01112233332 223444445567888999987 467777777899999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcc-----cEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 427 SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA-----AVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 427 spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
++...+|++|+.||.|..||.+.............+..|.+ .|+++.|..+| .-+++| +.+|.+.|||+++.
T Consensus 184 n~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVG--ts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 184 NEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVG--TSTGSVLIYDLRAS 260 (703)
T ss_pred cCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc-eeEEee--ccCCcEEEEEcccC
Confidence 99888999999999999999987643222222222233333 49999999886 344554 69999999999999
Q ss_pred ceeEEEcCCC--CeEEEEEcCC--CCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCC
Q psy4876 502 ACLDSIDTKS--QVCALLWNSD--YKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADET 577 (609)
Q Consensus 502 ~~~~~~~~~~--~v~sl~~s~~--g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~ 577 (609)
+++..-++.. +|..+.|.+. +..+++. +...++|||-.+|+....+.. ...+.++|+-|++.++++|-.+..
T Consensus 261 ~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~---Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~ 336 (703)
T KOG2321|consen 261 KPLLVKDHGYELPIKKLDWQDTDQQNKVVSM---DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSK 336 (703)
T ss_pred CceeecccCCccceeeecccccCCCceEEec---chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCc
Confidence 9887776654 8999999776 3445542 577899999999999888764 445999999999999999998888
Q ss_pred EEEEEcCCCc
Q psy4876 578 LRLWKIFEKV 587 (609)
Q Consensus 578 I~iWdl~~~~ 587 (609)
+..|=+....
T Consensus 337 m~~yyiP~LG 346 (703)
T KOG2321|consen 337 MHTYYIPSLG 346 (703)
T ss_pred ceeEEccccC
Confidence 7776655433
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.6e-12 Score=123.59 Aligned_cols=246 Identities=15% Similarity=0.253 Sum_probs=178.4
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe-----eEEEecCCC------------CceEEEEe----cCCEEEE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK-----KCRTMDGHD------------VRVGALAW----NTYILSS 392 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~-----~~~~l~~h~------------~~V~~l~~----~~~~L~s 392 (609)
..+-|.+|.|...|.+||+|..+|.|.++.-.... ....++.|. ..|..+.| +...++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 45789999999999999999999999999654322 334454454 46778888 4567778
Q ss_pred EecCCeEEEEEcCCCCeeE----------------------------------E-EEccCCCCeEEEEEccCCCEEEEEe
Q psy4876 393 GSRCGNIVHHDVRSRDHKV----------------------------------A-LLQNHTQEVCGLKWSPDGRYLASGG 437 (609)
Q Consensus 393 gs~dg~I~iwd~~~~~~~~----------------------------------~-~~~~h~~~V~~l~~spdg~~lasgs 437 (609)
.+.|.+|++|.+....... + .-.+|.-.|.+|.++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 8899999999886432111 0 1125778899999999999888865
Q ss_pred CCCcEEEEeCCCCCCCCCccceEeec-----CCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeE----EEc
Q psy4876 438 NDNLLNIWSGVPGQHTFSTQPIHSLS-----RHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLD----SID 508 (609)
Q Consensus 438 ~Dg~I~iwd~~~~~~~~~~~~~~~~~-----~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~----~~~ 508 (609)
|-.|.+|+++-....+ .+..+. .-..-|++..|+|...++++-. +..|.|++-|++...+.. .++
T Consensus 184 -dLRINLWnlei~d~sF---nIVDIKP~nmEeLteVITsaEFhp~~cn~f~YS--SSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSF---NIVDIKPANMEELTEVITSAEFHPHHCNVFVYS--SSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred -ceeeeeccccccCCce---eEEEccccCHHHHHHHHhhhccCHhHccEEEEe--cCCCcEEEeechhhhhhcchhhhhc
Confidence 6889999987653221 112222 2234578999999988888776 489999999998543211 111
Q ss_pred ----C---------CCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC-CCCceEEEEeCCC------------CCE---EE
Q psy4876 509 ----T---------KSQVCALLWNSDYKELVSAHGFAQNQLIIWKY-PSLVKVAELHGHS------------ARV---LN 559 (609)
Q Consensus 509 ----~---------~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~-~~~~~~~~l~~h~------------~~V---~~ 559 (609)
. -+.|..+.|+++|+++++- +-.+|+|||+ ...+++..+.-|. +.| ..
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsR---Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe 334 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSR---DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE 334 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEe---ccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence 0 1357899999999999983 3589999999 4556666666553 122 45
Q ss_pred EEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 560 LAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 560 l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
++|+.++.+++||+..+.++++++..+..
T Consensus 335 c~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 335 CSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred EEEcCCcceEecccccceEEEecCCCCcc
Confidence 78999999999999999999999766554
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-10 Score=126.20 Aligned_cols=220 Identities=15% Similarity=0.112 Sum_probs=143.3
Q ss_pred CCCCeEEEEEccCCCEEEEEeCC---CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEE-EEecCC--eEEEEEcC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSL---GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILS-SGSRCG--NIVHHDVR 405 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~-sgs~dg--~I~iwd~~ 405 (609)
+...+...+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....| +++.|+ +...+| .|++||+.
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~ 275 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA 275 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence 56788999999999998876543 369999998876543 3333344556788 566665 555555 68888998
Q ss_pred CCCeeEEEEccCCCCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEE
Q psy4876 406 SRDHKVALLQNHTQEVCGLKWSPDGRYLASGGN-DN--LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 406 ~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~-Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 482 (609)
++. ...+..+........|+|||+.|+..+. ++ .|+++|+.+++ ...+...........|+|++..++
T Consensus 276 ~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-------~~~lt~~~~~~~~~~~Spdg~~i~ 346 (430)
T PRK00178 276 SRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-------AERVTFVGNYNARPRLSADGKTLV 346 (430)
T ss_pred CCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-------EEEeecCCCCccceEECCCCCEEE
Confidence 763 3445556666677899999998877664 33 58888887662 122221222334578999998877
Q ss_pred EEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceEEEEeCCCCCEEEEE
Q psy4876 483 ASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGF-AQNQLIIWKYPSLVKVAELHGHSARVLNLA 561 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~-~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~ 561 (609)
++........|.+||+.+++... +..........|+|+|+.++.++.. ....|.+++.. +.....+..+.+.+...+
T Consensus 347 ~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ 424 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPS 424 (430)
T ss_pred EEEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCc
Confidence 76531112368899998876533 3322233456899999999886532 12347777774 333444555556677778
Q ss_pred EeCC
Q psy4876 562 MSPD 565 (609)
Q Consensus 562 ~spd 565 (609)
|+|-
T Consensus 425 ws~~ 428 (430)
T PRK00178 425 WSPY 428 (430)
T ss_pred cCCC
Confidence 8763
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.5e-13 Score=133.76 Aligned_cols=232 Identities=15% Similarity=0.232 Sum_probs=186.7
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEE
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~ 413 (609)
.-.-..+.++.+|++|+.|+.-|.|..+|..++++...+. -...|..+.| +...+++.....-++|||-.. ..++.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~G--tElHC 205 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQKKYVYVYDNNG--TELHC 205 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhhhceEEEecCCC--cEEee
Confidence 3455678999999999999999999999999999888876 4467888888 444444445567899998764 35677
Q ss_pred EccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeE
Q psy4876 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHI 493 (609)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I 493 (609)
+..| ..|..+.|.|.--+|++++..|.++.-|+..| +.+..+....+.+..++-+|.. -++-+|. ..|+|
T Consensus 206 lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G------klVa~~~t~~G~~~vm~qNP~N-aVih~Gh--snGtV 275 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTG------KLVASIRTGAGRTDVMKQNPYN-AVIHLGH--SNGTV 275 (545)
T ss_pred hhhc-CchhhhcccchhheeeecccCCceEEEeechh------hhhHHHHccCCccchhhcCCcc-ceEEEcC--CCceE
Confidence 7655 46889999999889999999999999999999 7788888888889999999976 4666664 79999
Q ss_pred EEEECCCCceeEEEc-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEE
Q psy4876 494 YFWNVSSGACLDSID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSA 572 (609)
Q Consensus 494 ~iwd~~t~~~~~~~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~ 572 (609)
.+|.-...+++..+- +.++|.+|++.++|.|++++. .|..++|||++....+.++.. ..+...++||..| ++++
T Consensus 276 SlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG--~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~ 350 (545)
T KOG1272|consen 276 SLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTG--LDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLAL 350 (545)
T ss_pred EecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecc--cccceeEeeeccccccceeec-CCCcccccccccc--ceee
Confidence 999999888776654 557999999999999999963 899999999999887776654 3456778888666 4444
Q ss_pred ECCCCEEEEEcC
Q psy4876 573 GADETLRLWKIF 584 (609)
Q Consensus 573 s~Dg~I~iWdl~ 584 (609)
+....|.||.=.
T Consensus 351 ~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 351 SYGDHVQIWKDA 362 (545)
T ss_pred ecCCeeeeehhh
Confidence 555689999643
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-10 Score=125.13 Aligned_cols=218 Identities=16% Similarity=0.122 Sum_probs=141.8
Q ss_pred CCCCeEEEEEccCCCEEEEEeCC-C--eEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEE-EEecCCe--EEEEEcC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSL-G--TVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILS-SGSRCGN--IVHHDVR 405 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~d-g--~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~-sgs~dg~--I~iwd~~ 405 (609)
+...+.+..|+|||+.|+..+.+ + .|.+||+.+++... +...........| +++.|+ +.+.+|. |+++|+.
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 56788899999999988876543 2 58899998876433 2222333446677 566555 5566665 7778887
Q ss_pred CCCeeEEEEccCCCCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEE
Q psy4876 406 SRDHKVALLQNHTQEVCGLKWSPDGRYLASGGN-DN--LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 406 ~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~-Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 482 (609)
++. ...+..+.......+|+|||++|+..+. ++ .|+++|+.+++ ...+..........+|+|+|..++
T Consensus 295 tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~-------~~~Lt~~g~~~~~~~~SpDG~~l~ 365 (448)
T PRK04792 295 TKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK-------VSRLTFEGEQNLGGSITPDGRSMI 365 (448)
T ss_pred CCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-------EEEEecCCCCCcCeeECCCCCEEE
Confidence 653 4445556566778899999998877654 33 57777887662 222222222334578999998877
Q ss_pred EEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCC--eEEEEECCCCceEEEEeCCCCCEEEE
Q psy4876 483 ASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQN--QLIIWKYPSLVKVAELHGHSARVLNL 560 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg--~I~Iwd~~~~~~~~~l~~h~~~V~~l 560 (609)
++........|.++|+.+++... +..........|+|+|+.++..+. .++ .|.+++. ++.....+..+.+.+...
T Consensus 366 ~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~-~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 366 MVNRTNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTT-YQGKQVLAAVSI-DGRFKARLPAGQGEVKSP 442 (448)
T ss_pred EEEecCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEe-cCCceEEEEEEC-CCCceEECcCCCCCcCCC
Confidence 76531112356778888876533 322222335589999999988654 333 4777776 566666666666777888
Q ss_pred EEeC
Q psy4876 561 AMSP 564 (609)
Q Consensus 561 ~~sp 564 (609)
+|+|
T Consensus 443 ~Wsp 446 (448)
T PRK04792 443 AWSP 446 (448)
T ss_pred ccCC
Confidence 8887
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-11 Score=125.95 Aligned_cols=254 Identities=16% Similarity=0.185 Sum_probs=173.9
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEE-EEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe---cCCEEEEEecCCeE
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQEGYML-GVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW---NTYILSSGSRCGNI 399 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~spdg~~L-asgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~---~~~~L~sgs~dg~I 399 (609)
..++.+..+++....+.|..+|||+|+ |+|..--.|++||+..-.+...- .-...+..+.. +-..++.-..|..|
T Consensus 40 ~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER-hlDae~V~feiLsDD~SK~v~L~~DR~I 118 (703)
T KOG2321|consen 40 QRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER-HLDAEVVDFEILSDDYSKSVFLQNDRTI 118 (703)
T ss_pred HHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee-cccccceeEEEeccchhhheEeecCcee
Confidence 456677778888899999999999765 56778889999999864432221 11223333222 22344445566677
Q ss_pred EEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCC
Q psy4876 400 VHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSP 479 (609)
Q Consensus 400 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 479 (609)
-++.--.. +....+.. .-..++++.-.--|.+++....|+-++++.| ..+..+....+.++++..++-.
T Consensus 119 efHak~G~-hy~~RIP~---~GRDm~y~~~scDly~~gsg~evYRlNLEqG------rfL~P~~~~~~~lN~v~in~~h- 187 (703)
T KOG2321|consen 119 EFHAKYGR-HYRTRIPK---FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG------RFLNPFETDSGELNVVSINEEH- 187 (703)
T ss_pred eehhhcCe-eeeeecCc---CCccccccCCCccEEEeecCcceEEEEcccc------ccccccccccccceeeeecCcc-
Confidence 66543322 22222221 2234555542223444455567999999998 6777777777899999999965
Q ss_pred cEEEEEeccCCCeEEEEECCCCceeEEEcCCC------------CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE
Q psy4876 480 NVLASGGGTADRHIYFWNVSSGACLDSIDTKS------------QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKV 547 (609)
Q Consensus 480 ~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~------------~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~ 547 (609)
.||++| +.+|.|.+||.++...+..+.... .|+++.|+.+|-.+++ |..+|.|.|||+++.+++
T Consensus 188 gLla~G--t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aV--Gts~G~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 188 GLLACG--TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAV--GTSTGSVLIYDLRASKPL 263 (703)
T ss_pred ceEEec--ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEe--eccCCcEEEEEcccCCce
Confidence 588876 489999999999888777665332 3999999999988888 668999999999998877
Q ss_pred EEE-eCCCCCEEEEEEeCC--CCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 548 AEL-HGHSARVLNLAMSPD--ETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 548 ~~l-~~h~~~V~~l~~spd--g~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
..- ++..-+|..+.|.+. +..|+|. ....++|||-.++......+.
T Consensus 264 ~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 264 LVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP 312 (703)
T ss_pred eecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc
Confidence 543 233467899999775 4455555 346889999988876654443
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-11 Score=116.49 Aligned_cols=156 Identities=24% Similarity=0.373 Sum_probs=119.2
Q ss_pred CCCCeEEEEEccC-C--CEEEEEeCCCeEEEEeCCCCeeE----------EEecCCCCceEEEEecC--CEEEEEecCCe
Q psy4876 334 GNENVCSVAWIQE-G--YMLGVGTSLGTVQLWDVSAKKKC----------RTMDGHDVRVGALAWNT--YILSSGSRCGN 398 (609)
Q Consensus 334 h~~~V~~v~~spd-g--~~Lasgs~dg~I~iwd~~~~~~~----------~~l~~h~~~V~~l~~~~--~~L~sgs~dg~ 398 (609)
..+.+.|..|..+ + -+|++|..+|.|.+||+.++..+ .....|..+|.++.++. ..=++|+.+-.
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 3467777776543 3 35677889999999999987433 33346899999999952 23346677778
Q ss_pred EEEEEcCCCCee---EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEc
Q psy4876 399 IVHHDVRSRDHK---VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWC 475 (609)
Q Consensus 399 I~iwd~~~~~~~---~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 475 (609)
+..|.+...... ...+....-.|..+.+-||++.+|+++.|+.|+||..++. .++..+.-|.+.|.+++|+
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl------~pLAVLkyHsagvn~vAfs 302 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL------NPLAVLKYHSAGVNAVAFS 302 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC------CchhhhhhhhcceeEEEeC
Confidence 888887643111 1122222345888999999999999999999999999998 8899999999999999999
Q ss_pred CCCCcEEEEEeccCCCeEEEEEC
Q psy4876 476 PWSPNVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 476 p~~~~llasggGs~Dg~I~iwd~ 498 (609)
|+. .++|++ +.|++|.+|++
T Consensus 303 pd~-~lmAaa--skD~rISLWkL 322 (323)
T KOG0322|consen 303 PDC-ELMAAA--SKDARISLWKL 322 (323)
T ss_pred CCC-chhhhc--cCCceEEeeec
Confidence 985 577776 49999999986
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.1e-12 Score=132.66 Aligned_cols=287 Identities=17% Similarity=0.237 Sum_probs=204.8
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
+..++.+..+|.| -++.+..-.+++-|+...- .....+..+ ..-.|-.+.|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~-----------------------~ppr~l~h~-tpw~vad~qws~h~ 79 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYIIDLDDPF-----------------------TPPRWLHHI-TPWQVADVQWSPHP 79 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEEEeccCCC-----------------------CCceeeecc-CcchhcceecccCC
Confidence 3446677777865 3333344456677776521 122222222 34457788998864
Q ss_pred --CEEEEEeCCCeEEEEeCCC---CeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 348 --YMLGVGTSLGTVQLWDVSA---KKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 348 --~~Lasgs~dg~I~iwd~~~---~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
.+-++......-.||++.. ......+.+|...|+.+.|+ +.++++++.|-.+..||++.....+.....-..
T Consensus 80 a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s 159 (1081)
T KOG0309|consen 80 AKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS 159 (1081)
T ss_pred CCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc
Confidence 5667777778888999863 34455678999999999994 689999999999999999988767766665556
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS 499 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~ 499 (609)
.-..++|+-....+.+.+..+.|++||++.+. .++..+.+|...|..++|...-...+.+. +.|++|++||..
T Consensus 160 ~asqVkwnyk~p~vlasshg~~i~vwd~r~gs-----~pl~s~K~~vs~vn~~~fnr~~~s~~~s~--~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 160 AASQVKWNYKDPNVLASSHGNDIFVWDLRKGS-----TPLCSLKGHVSSVNSIDFNRFKYSEIMSS--SNDGTVKFWDYS 232 (1081)
T ss_pred cCceeeecccCcchhhhccCCceEEEeccCCC-----cceEEecccceeeehHHHhhhhhhhhccc--CCCCceeeeccc
Confidence 67789999844445555667899999999885 78899999999999999977655556665 489999999997
Q ss_pred CC--ceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC----------CCceEEEEeCCCCCEEEEEEeCCC-
Q psy4876 500 SG--ACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYP----------SLVKVAELHGHSARVLNLAMSPDE- 566 (609)
Q Consensus 500 t~--~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~----------~~~~~~~l~~h~~~V~~l~~spdg- 566 (609)
.. +..+.+....++..-.|-|-|.-.++--...++.+.+++.+ ..+.+..+.||.+.|....|-..+
T Consensus 233 kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e 312 (1081)
T KOG0309|consen 233 KSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKE 312 (1081)
T ss_pred ccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccc
Confidence 43 34455667778888888887665443211124455555443 236788999999999877764422
Q ss_pred ---------CEEEEEECCCCEEEEEcCCC
Q psy4876 567 ---------TTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 567 ---------~~L~s~s~Dg~I~iWdl~~~ 586 (609)
-.|+|-+.|.++|+|.+...
T Consensus 313 ~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 313 CDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred ccCCCCccceeEEEeecCCceEeeeccHH
Confidence 27999999999999998653
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.5e-10 Score=119.84 Aligned_cols=234 Identities=15% Similarity=0.134 Sum_probs=144.2
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEE---EEEeCCC--eEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEec-
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQEGYML---GVGTSLG--TVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSR- 395 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~spdg~~L---asgs~dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~- 395 (609)
+....+.. ....+.+-+|+|||+.+ ++...+| .|.+.++.+++..+.. ...+......| ||+.|+..+.
T Consensus 175 ~~~~~lt~--~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG~~Laf~s~~ 251 (428)
T PRK01029 175 QNLRPLTQ--EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRKKLLAFISDR 251 (428)
T ss_pred CCceEccc--CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCCCEEEEEECC
Confidence 44444433 34556788999999742 3444444 5777888876543332 23444455677 5766665442
Q ss_pred CC----eEEEEEcCCC--CeeEEEEccCCCCeEEEEEccCCCEEEEEe-CCCc--EEEEeCCCCCCCCCccceEeecCCc
Q psy4876 396 CG----NIVHHDVRSR--DHKVALLQNHTQEVCGLKWSPDGRYLASGG-NDNL--LNIWSGVPGQHTFSTQPIHSLSRHQ 466 (609)
Q Consensus 396 dg----~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~spdg~~lasgs-~Dg~--I~iwd~~~~~~~~~~~~~~~~~~h~ 466 (609)
+| .+.+|++..+ .........+.......+|+|||+.|+..+ .+|. |+++++.... .....+..+.
T Consensus 252 ~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-----~~~~~lt~~~ 326 (428)
T PRK01029 252 YGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-----QSPRLLTKKY 326 (428)
T ss_pred CCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc-----cceEEeccCC
Confidence 33 3344676642 122233333334456789999999888766 3564 4444544221 2234444455
Q ss_pred ccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEe-cCCCeEEEEECCCCc
Q psy4876 467 AAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHG-FAQNQLIIWKYPSLV 545 (609)
Q Consensus 467 ~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG-~~dg~I~Iwd~~~~~ 545 (609)
..+....|+|+|+.+++++.......|.+||+.+++..........+....|+|+|+.|+.... .....|+++|+..++
T Consensus 327 ~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 327 RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 5677899999998777765311235799999998877554444446778999999999886542 234678899988776
Q ss_pred eEEEEeCCCCCEEEEEEeCCC
Q psy4876 546 KVAELHGHSARVLNLAMSPDE 566 (609)
Q Consensus 546 ~~~~l~~h~~~V~~l~~spdg 566 (609)
..... ...+.+...+|+|-.
T Consensus 407 ~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 407 TRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEee-cCCCcccCceecCCC
Confidence 54333 344556778888753
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.6e-10 Score=120.40 Aligned_cols=216 Identities=14% Similarity=0.118 Sum_probs=144.2
Q ss_pred CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecC---CeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCC
Q psy4876 357 GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRC---GNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR 431 (609)
Q Consensus 357 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 431 (609)
..|.++|... ...+.+..+...+....| +++.|+.+..+ ..|++||+.++. ...+..+...+.+++|+|||+
T Consensus 170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~--~~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ--REKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC--EEEeecCCCCccceEECCCCC
Confidence 3688888754 334555556777888888 57777776643 479999998763 233344556677899999999
Q ss_pred EEEEE-eCCC--cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc
Q psy4876 432 YLASG-GNDN--LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID 508 (609)
Q Consensus 432 ~lasg-s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~ 508 (609)
.|+.. +.++ .|++||+.++ ....+..+........|+|++..++++..-.....|+++|+.+++......
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~-------~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~ 319 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGK-------QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTF 319 (417)
T ss_pred EEEEEECCCCCccEEEEECCCC-------CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 77654 4343 5899998875 233444455555677999999877766521122378889988777544433
Q ss_pred CCCCeEEEEEcCCCCeEEEEEecC-CCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCC---CEEEEEcC
Q psy4876 509 TKSQVCALLWNSDYKELVSAHGFA-QNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADE---TLRLWKIF 584 (609)
Q Consensus 509 ~~~~v~sl~~s~~g~~l~~~sG~~-dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg---~I~iWdl~ 584 (609)
....+..+.|+|+|++++.+.... ...|.+||+.++... .+..+ .......|+|||++|+.++.++ .+.+.+..
T Consensus 320 ~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 320 RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 445677889999999998865311 127899998875432 33222 2345678999999888877765 34454543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-10 Score=116.95 Aligned_cols=280 Identities=14% Similarity=0.190 Sum_probs=193.1
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
++.++.+.|||.| .++...-..|.+|.... .. .+..+.| ..|..+.|+|.+
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~-------------------------~~--~l~~~~~-~~V~~~~fSP~~ 83 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAGVECWGGPS-------------------------KA--KLVRFRH-PDVKYLDFSPNE 83 (561)
T ss_pred CcchhheeecCcchheehhhccceEEccccc-------------------------hh--heeeeec-CCceecccCccc
Confidence 5677889999998 66666678899998776 33 4444433 679999999999
Q ss_pred CEEEEEeCCC---------------eEEEEeCCCCeeEEEecCCCCc--eE-EEEe--cCCEEEEEecCCeEEEEEcCCC
Q psy4876 348 YMLGVGTSLG---------------TVQLWDVSAKKKCRTMDGHDVR--VG-ALAW--NTYILSSGSRCGNIVHHDVRSR 407 (609)
Q Consensus 348 ~~Lasgs~dg---------------~I~iwd~~~~~~~~~l~~h~~~--V~-~l~~--~~~~L~sgs~dg~I~iwd~~~~ 407 (609)
+||.+-...+ .+.|||+.++..+..+.+...+ .. -+.| +..+++-. ....++|+++ +.
T Consensus 84 kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~ 161 (561)
T COG5354 84 KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TD 161 (561)
T ss_pred ceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CC
Confidence 9999865433 4899999999999999876655 33 4555 44444433 3356999997 33
Q ss_pred CeeEEEEccC-CCCeEEEEEccCCC--EEEE-----EeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCC
Q psy4876 408 DHKVALLQNH-TQEVCGLKWSPDGR--YLAS-----GGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSP 479 (609)
Q Consensus 408 ~~~~~~~~~h-~~~V~~l~~spdg~--~las-----gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 479 (609)
......+..- ...|....|+|.|+ .||. .+.+++++||.+... ..+.+..--...-..+.|++.|.
T Consensus 162 n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~------s~l~tk~lfk~~~~qLkW~~~g~ 235 (561)
T COG5354 162 NIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN------SVLVTKNLFKVSGVQLKWQVLGK 235 (561)
T ss_pred ccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC------CeeeeeeeEeecccEEEEecCCc
Confidence 2222222211 35688889999643 3444 456789999998855 23322222222335788999998
Q ss_pred cEEEEEec--------cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe
Q psy4876 480 NVLASGGG--------TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH 551 (609)
Q Consensus 480 ~llasggG--------s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~ 551 (609)
.+++-.-. .....++++++....+.......++|...+|.|.++.+++++|..+-.+.++|++.. ....
T Consensus 236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~-- 312 (561)
T COG5354 236 YLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY-- 312 (561)
T ss_pred eEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEe--
Confidence 77664310 013568899998666555556688999999999999999999999999999999765 2222
Q ss_pred CCCCCEEEEEEeCCCCEEEEEECC---CCEEEEEcCCCc
Q psy4876 552 GHSARVLNLAMSPDETTVLSAGAD---ETLRLWKIFEKV 587 (609)
Q Consensus 552 ~h~~~V~~l~~spdg~~L~s~s~D---g~I~iWdl~~~~ 587 (609)
.....=..+.|+|.+++++.++-| |.|-+||..+.-
T Consensus 313 ~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf 351 (561)
T COG5354 313 FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF 351 (561)
T ss_pred cCCcccccccccCcccEEEEecCCccccceEEeccCCce
Confidence 233444567788888888887765 567788776544
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-10 Score=121.53 Aligned_cols=215 Identities=16% Similarity=0.202 Sum_probs=138.6
Q ss_pred EEEecCCC----eEEEEc-C--CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccC
Q psy4876 274 LIDWSHFN----VLAVAL-G--GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQE 346 (609)
Q Consensus 274 ~l~wsp~~----lla~s~-d--g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spd 346 (609)
.=.||||+ ++.++. + ..|++.++.+ +....+..+. +.....+|+||
T Consensus 189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~-------------------------g~~~~lt~~~--g~~~~p~wSPD 241 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLEN-------------------------PAGKKILALQ--GNQLMPTFSPR 241 (428)
T ss_pred cceEccCCCceEEEEEEccCCCceEEEEECCC-------------------------CCceEeecCC--CCccceEECCC
Confidence 35799995 222333 2 4688889887 6666665543 44557899999
Q ss_pred CCEEEEEeC-CC----eEEEEeCCCC---eeEEEecCCCCceEEEEe--cCCEEEEEe-cCCeEEEE--EcCCCCeeEEE
Q psy4876 347 GYMLGVGTS-LG----TVQLWDVSAK---KKCRTMDGHDVRVGALAW--NTYILSSGS-RCGNIVHH--DVRSRDHKVAL 413 (609)
Q Consensus 347 g~~Lasgs~-dg----~I~iwd~~~~---~~~~~l~~h~~~V~~l~~--~~~~L~sgs-~dg~I~iw--d~~~~~~~~~~ 413 (609)
|+.||..+. +| .+.+|++..+ +..+....+.......+| +|..|+..+ .+|...+| ++.........
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 988887653 22 3445777653 333333333344456778 577666554 56654444 54432223444
Q ss_pred EccCCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCC
Q psy4876 414 LQNHTQEVCGLKWSPDGRYLASGGND---NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD 490 (609)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~lasgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~D 490 (609)
+..+...+....|+|||++|+..+.+ ..|++||+.+++ . ..+......+....|+|+|..+++++.....
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~------~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~ 394 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR------D-YQLTTSPENKESPSWAIDSLHLVYSAGNSNE 394 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC------e-EEccCCCCCccceEECCCCCEEEEEECCCCC
Confidence 55555677889999999998877653 369999998772 2 3333333456789999999888776542235
Q ss_pred CeEEEEECCCCceeEEEcCCCCeEEEEEcCCC
Q psy4876 491 RHIYFWNVSSGACLDSIDTKSQVCALLWNSDY 522 (609)
Q Consensus 491 g~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g 522 (609)
..|++||+..++........+.+...+|+|-.
T Consensus 395 ~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 395 SELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred ceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 78999999988766555555667778888753
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.4e-10 Score=116.98 Aligned_cols=236 Identities=14% Similarity=0.198 Sum_probs=159.5
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecC----CEEEE-----EecCCeEEEEEcCCCC-
Q psy4876 339 CSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT----YILSS-----GSRCGNIVHHDVRSRD- 408 (609)
Q Consensus 339 ~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~----~~L~s-----gs~dg~I~iwd~~~~~- 408 (609)
++..|+.|..+.|-- ..+.|++|++.+.+.+.. .-|...|+.+.+++ ..+++ ++.-+.|++|.+....
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 588999887554432 336899999987433221 23677788888842 34433 3455679999887321
Q ss_pred -eeEEEEccCCCCeEEEEEccCCCE-EEEE--eCC---------CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEc
Q psy4876 409 -HKVALLQNHTQEVCGLKWSPDGRY-LASG--GND---------NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWC 475 (609)
Q Consensus 409 -~~~~~~~~h~~~V~~l~~spdg~~-lasg--s~D---------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 475 (609)
..+..-.-....=..+.|++-|.- |+.+ .-| .++++.++... .....+ ...++|.++.|+
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~------s~~V~L-~k~GPVhdv~W~ 279 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE------SVSVPL-LKEGPVHDVTWS 279 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc------eEEEec-CCCCCceEEEEC
Confidence 111111111233456889887663 2222 223 36888888732 333333 357899999999
Q ss_pred CCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEE-ecCCCeEEEEECCCCceEEEEeCCC
Q psy4876 476 PWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAH-GFAQNQLIIWKYPSLVKVAELHGHS 554 (609)
Q Consensus 476 p~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~s-G~~dg~I~Iwd~~~~~~~~~l~~h~ 554 (609)
|.+..+.++- |.+-.++.|||++ +..+..+ ..++-..+-|+|.|++++.+. |.-.|.|.|||+.+.+++..+....
T Consensus 280 ~s~~EF~Vvy-GfMPAkvtifnlr-~~~v~df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~ 356 (566)
T KOG2315|consen 280 PSGREFAVVY-GFMPAKVTIFNLR-GKPVFDF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN 356 (566)
T ss_pred CCCCEEEEEE-ecccceEEEEcCC-CCEeEeC-CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC
Confidence 9997776666 4789999999986 4444443 335667899999999988762 4457899999999999888886544
Q ss_pred CCEEEEEEeCCCCEEEEEEC------CCCEEEEEcCCCcc
Q psy4876 555 ARVLNLAMSPDETTVLSAGA------DETLRLWKIFEKVK 588 (609)
Q Consensus 555 ~~V~~l~~spdg~~L~s~s~------Dg~I~iWdl~~~~~ 588 (609)
. +-+.|+|||++++|++. |+.++||+..+...
T Consensus 357 t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 357 T--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred c--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 3 55899999999999875 78999999976543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.6e-10 Score=119.53 Aligned_cols=216 Identities=17% Similarity=0.128 Sum_probs=143.2
Q ss_pred eEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecC---CeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCE
Q psy4876 358 TVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRC---GNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRY 432 (609)
Q Consensus 358 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (609)
.|.++|.+.+. .+.+..+...+....| +++.|+..+.+ ..|.+||+.++. ...+....+.+....|+|||+.
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~--~~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR--REQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC--EEEccCCCCCcCCeEECCCCCE
Confidence 47788877544 4555567778888999 57777665533 369999998764 2333334445567899999998
Q ss_pred EEE-EeCCC--cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC
Q psy4876 433 LAS-GGNDN--LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT 509 (609)
Q Consensus 433 las-gs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~ 509 (609)
|+. .+.+| .|++||+.++ ....+..+........|+|+|..++++........|+++|+.+++.......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~-------~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~ 329 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASR-------QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV 329 (430)
T ss_pred EEEEEccCCCceEEEEECCCC-------CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC
Confidence 874 44444 6888899876 2334555555667789999998887765311234688889888775433322
Q ss_pred CCCeEEEEEcCCCCeEEEEEecCCC--eEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECC---CCEEEEEcC
Q psy4876 510 KSQVCALLWNSDYKELVSAHGFAQN--QLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGAD---ETLRLWKIF 584 (609)
Q Consensus 510 ~~~v~sl~~s~~g~~l~~~sG~~dg--~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D---g~I~iWdl~ 584 (609)
........|+|+|+.++..+. .++ .|.+||+.+++.. .+. +........|+|||+.|+.++.+ ..|.++++.
T Consensus 330 ~~~~~~~~~Spdg~~i~~~~~-~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 330 GNYNARPRLSADGKTLVMVHR-QDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CCCccceEECCCCCEEEEEEc-cCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 334456789999999988753 233 5888998877643 332 22223356899999988876654 346667775
Q ss_pred CC
Q psy4876 585 EK 586 (609)
Q Consensus 585 ~~ 586 (609)
..
T Consensus 407 g~ 408 (430)
T PRK00178 407 GR 408 (430)
T ss_pred CC
Confidence 43
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-08 Score=103.92 Aligned_cols=171 Identities=14% Similarity=0.112 Sum_probs=127.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCC-eEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCG-NIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg-~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
+|++++..+. |...|.+...+-.++. +|...|.-..+ ++.-++.|..|| .+-|+|.+++ .+..+...-+.|.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~--e~kr~e~~lg~I~ 405 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG--EVKRIEKDLGNIE 405 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc--eEEEeeCCccceE
Confidence 5889988887 7788887765554443 46666766666 677899999999 8999999986 4667777788999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEE-eccCCCeEEEEECCCC
Q psy4876 423 GLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASG-GGTADRHIYFWNVSSG 501 (609)
Q Consensus 423 ~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg-gGs~Dg~I~iwd~~t~ 501 (609)
++..+++|++++++.....|.+.|+.++. ....-+...+-|+.++|||++.++..+- .|..-..|+++|+..+
T Consensus 406 av~vs~dGK~~vvaNdr~el~vididngn------v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 406 AVKVSPDGKKVVVANDRFELWVIDIDNGN------VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EEEEcCCCcEEEEEcCceEEEEEEecCCC------eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 99999999999999988999999999983 3333334567899999999986554331 1234568999999998
Q ss_pred ceeEEEcCCCCeEEEEEcCCCCeEEE
Q psy4876 502 ACLDSIDTKSQVCALLWNSDYKELVS 527 (609)
Q Consensus 502 ~~~~~~~~~~~v~sl~~s~~g~~l~~ 527 (609)
+........+.-.+-+|.|++++|..
T Consensus 480 Kiy~vTT~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 480 KIYDVTTPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred eEEEecCCcccccCcccCCCCcEEEE
Confidence 87766554444555666666666654
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-09 Score=105.98 Aligned_cols=245 Identities=17% Similarity=0.185 Sum_probs=173.9
Q ss_pred CCCCeEEEEEcc---CCC-EEEEEeCCCeEEEEeCCCCeeEEEecCCC---C---ceEEEEe--cCCEEEEEecCCeEEE
Q psy4876 334 GNENVCSVAWIQ---EGY-MLGVGTSLGTVQLWDVSAKKKCRTMDGHD---V---RVGALAW--NTYILSSGSRCGNIVH 401 (609)
Q Consensus 334 h~~~V~~v~~sp---dg~-~Lasgs~dg~I~iwd~~~~~~~~~l~~h~---~---~V~~l~~--~~~~L~sgs~dg~I~i 401 (609)
....+..+.|.. +|. .|+.+...|.|.++..........+.+-. - ...++.| .+..++++..+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 456788888875 344 66777888999999877655555554422 1 2345556 3678899999999986
Q ss_pred EEcCCCC-eeEEEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceE-eecCCcccEEEEEEcCCC
Q psy4876 402 HDVRSRD-HKVALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIH-SLSRHQAAVKAIAWCPWS 478 (609)
Q Consensus 402 wd~~~~~-~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~~ 478 (609)
-+..... +.++..+.|.-++....|+. +.+++.+|+.|+.+..||++... ..+. ....|...|.+|.-+|..
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-----~~i~~n~kvH~~GV~SI~ss~~~ 222 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-----TFIWHNSKVHTSGVVSIYSSPPK 222 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-----ceeeecceeeecceEEEecCCCC
Confidence 5554431 23457889999999999986 55789999999999999999432 2333 255688999999999988
Q ss_pred CcEEEEEeccCCCeEEEEECC-CCceeEEEcCCCCeEEEEEcCCCC--eEEEEEecCCCeEEEEECCCC--c---eEEEE
Q psy4876 479 PNVLASGGGTADRHIYFWNVS-SGACLDSIDTKSQVCALLWNSDYK--ELVSAHGFAQNQLIIWKYPSL--V---KVAEL 550 (609)
Q Consensus 479 ~~llasggGs~Dg~I~iwd~~-t~~~~~~~~~~~~v~sl~~s~~g~--~l~~~sG~~dg~I~Iwd~~~~--~---~~~~l 550 (609)
+..+++| +.|..|++||++ .++++..-...+.|+.+.++|.-. .|+++ ..+-.+|.+.... + .....
T Consensus 223 ~~~I~TG--sYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~C---Mh~G~ki~~~~~~~~e~~~~~~s~ 297 (339)
T KOG0280|consen 223 PTYIATG--SYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAAC---MHNGAKILDSSDKVLEFQIVLPSD 297 (339)
T ss_pred CceEEEe--ccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHH---HhcCceEEEecccccchheeeecc
Confidence 8899997 599999999999 678888777789999999999754 22222 3455666665432 2 23334
Q ss_pred eCCCCCEEEEEEeCCCCEEEEEE-CCCCEE-EEEcCCCcc
Q psy4876 551 HGHSARVLNLAMSPDETTVLSAG-ADETLR-LWKIFEKVK 588 (609)
Q Consensus 551 ~~h~~~V~~l~~spdg~~L~s~s-~Dg~I~-iWdl~~~~~ 588 (609)
..|.+-+..-.|......|+|++ .|..++ +|-.-++..
T Consensus 298 ~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 298 KIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGEP 337 (339)
T ss_pred ccccceeeccccccccceeeeeeccccceeeeeeeccCCc
Confidence 56777677777754455788865 477755 886655543
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.6e-08 Score=98.44 Aligned_cols=271 Identities=12% Similarity=0.145 Sum_probs=182.3
Q ss_pred CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCC---CeEEEEeC
Q psy4876 288 GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSL---GTVQLWDV 364 (609)
Q Consensus 288 dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~d---g~I~iwd~ 364 (609)
+..|++|++.+.. +.+..+..+.+.+.++-|+|+|++++|+++..+ |.|..|.+
T Consensus 15 s~gI~v~~ld~~~-----------------------g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i 71 (346)
T COG2706 15 SQGIYVFNLDTKT-----------------------GELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI 71 (346)
T ss_pred CCceEEEEEeCcc-----------------------cccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE
Confidence 6789999998621 445455555577889999999999999987655 66777777
Q ss_pred CC--CeeEE--EecCCCCceEEEEe--cCCEEEEEe-cCCeEEEEEcCCCCeeE--EEEccCCCC----------eEEEE
Q psy4876 365 SA--KKKCR--TMDGHDVRVGALAW--NTYILSSGS-RCGNIVHHDVRSRDHKV--ALLQNHTQE----------VCGLK 425 (609)
Q Consensus 365 ~~--~~~~~--~l~~h~~~V~~l~~--~~~~L~sgs-~dg~I~iwd~~~~~~~~--~~~~~h~~~----------V~~l~ 425 (609)
+. |++.. ........-..++. ++.+|+++. ..|.|.++-++...... .....|.+. +....
T Consensus 72 D~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~ 151 (346)
T COG2706 72 DPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN 151 (346)
T ss_pred cCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee
Confidence 64 44321 11112222255666 577777765 46789999887643221 122234444 88899
Q ss_pred EccCCCEEEEEeC-CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC--c
Q psy4876 426 WSPDGRYLASGGN-DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG--A 502 (609)
Q Consensus 426 ~spdg~~lasgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~--~ 502 (609)
+.|++++|++..- --.|.+|++..+.... .....+ .....-+.|.|+|+++...+.+ -.+++|-+|..... +
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~--~~~~~v-~~G~GPRHi~FHpn~k~aY~v~--EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTP--ADPAEV-KPGAGPRHIVFHPNGKYAYLVN--ELNSTVDVLEYNPAVGK 226 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCcccc--cccccc-CCCCCcceEEEcCCCcEEEEEe--ccCCEEEEEEEcCCCce
Confidence 9999999998764 2369999999763221 111222 2344568999999998777776 38999999999863 2
Q ss_pred --eeEEE-------cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC-ceEEEE---eCCCCCEEEEEEeCCCCEE
Q psy4876 503 --CLDSI-------DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL-VKVAEL---HGHSARVLNLAMSPDETTV 569 (609)
Q Consensus 503 --~~~~~-------~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~-~~~~~l---~~h~~~V~~l~~spdg~~L 569 (609)
.++.+ ........|..+++|++|+++-- ..+.|.+|.+... ..+..+ ..+...-.+..|++.|++|
T Consensus 227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR-g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~L 305 (346)
T COG2706 227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR-GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFL 305 (346)
T ss_pred EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC-CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEE
Confidence 22222 23347889999999999998743 4558888887532 223222 2344446889999999999
Q ss_pred EEEECC-CCEEEEEcCCCc
Q psy4876 570 LSAGAD-ETLRLWKIFEKV 587 (609)
Q Consensus 570 ~s~s~D-g~I~iWdl~~~~ 587 (609)
+++..| ..|.+|.+....
T Consensus 306 iaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 306 IAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEccCCCcEEEEEEcCCC
Confidence 998875 578888876543
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.2e-10 Score=110.69 Aligned_cols=271 Identities=17% Similarity=0.271 Sum_probs=178.5
Q ss_pred CCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeE
Q psy4876 280 FNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTV 359 (609)
Q Consensus 280 ~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I 359 (609)
+++++++.|.+++||--.+. ++.-+-....-..+++++++.++...|++|-.+|++
T Consensus 37 ~gv~~~s~drtvrv~lkrds------------------------~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 37 EGVISVSEDRTVRVWLKRDS------------------------GQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred CCeEEccccceeeeEEeccc------------------------cccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 47999999999999965441 221111111145789999999999999999999999
Q ss_pred EEEeCC----CCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEE--------------------------------
Q psy4876 360 QLWDVS----AKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVH-------------------------------- 401 (609)
Q Consensus 360 ~iwd~~----~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~i-------------------------------- 401 (609)
.-+.+. .....+....|..+|..+-|+ ...+++.+.|..+.-
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd 172 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGD 172 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecc
Confidence 888664 334455666677777777773 345555554433321
Q ss_pred -------EEcCC-CCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEE
Q psy4876 402 -------HDVRS-RDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473 (609)
Q Consensus 402 -------wd~~~-~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~ 473 (609)
-.+.. .-..+.++.+|.+.+.+++|.+....|++|..|..|.+||+-... .....+.+|...|..+.
T Consensus 173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~-----g~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK-----GTAYELQGHNDKVQALS 247 (404)
T ss_pred cccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc-----ceeeeeccchhhhhhhh
Confidence 11111 113466778999999999999999999999999999999997653 45677888999999998
Q ss_pred EcCCCCcEEEEEeccCCCeEEEEECCCCceeE----------EEc--------------------C-----CCCeEEEEE
Q psy4876 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLD----------SID--------------------T-----KSQVCALLW 518 (609)
Q Consensus 474 ~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~----------~~~--------------------~-----~~~v~sl~~ 518 (609)
..+.-..+++.+ .||.|.+||+....... ... + ...++..+-
T Consensus 248 ~~~~t~~l~S~~---edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~ 324 (404)
T KOG1409|consen 248 YAQHTRQLISCG---EDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCS 324 (404)
T ss_pred hhhhheeeeecc---CCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccc
Confidence 887766666654 79999999997432110 000 0 011222222
Q ss_pred cCCCCeEEEEEecCCCeEEEEEC-------CCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 519 NSDYKELVSAHGFAQNQLIIWKY-------PSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 519 s~~g~~l~~~sG~~dg~I~Iwd~-------~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
+....+... | ..-.+++-|. .+..++..+..-...|+.+.+..+-.+|+|+|.|..|+|||+..
T Consensus 325 s~~~~~p~m--g-~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 325 SNRSSYPTM--G-FEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cCccccccc--c-ceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 222222222 2 1233444442 11233444433335689999988888999999999999999864
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.9e-09 Score=115.57 Aligned_cols=216 Identities=15% Similarity=0.129 Sum_probs=138.4
Q ss_pred eEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEec-CC--eEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCE
Q psy4876 358 TVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSR-CG--NIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRY 432 (609)
Q Consensus 358 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~-dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (609)
.|.++|..... .+.+..+...+....| ++..|+..+. ++ .|++||+.++.. ..+....+.....+|+|||+.
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCE
Confidence 57777865443 3455566778888889 5777766543 33 588999987642 223222334457899999998
Q ss_pred EEE-EeCCCc--EEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC
Q psy4876 433 LAS-GGNDNL--LNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT 509 (609)
Q Consensus 433 las-gs~Dg~--I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~ 509 (609)
|+. .+.++. |++||+.++ ....+..+.......+|+|++..++++........|+++|+.+++.......
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg-------~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~ 348 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATK-------ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE 348 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCC-------CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC
Confidence 875 455564 888888766 2344555555667889999998887765311235678888887775443222
Q ss_pred CCCeEEEEEcCCCCeEEEEEecCCC--eEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECC-CC--EEEEEcC
Q psy4876 510 KSQVCALLWNSDYKELVSAHGFAQN--QLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGAD-ET--LRLWKIF 584 (609)
Q Consensus 510 ~~~v~sl~~s~~g~~l~~~sG~~dg--~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D-g~--I~iWdl~ 584 (609)
........|+|+|++++.++. .++ .|.++|+.++... .+... .......|+|||+.|+..+.+ +. |.+++..
T Consensus 349 g~~~~~~~~SpDG~~l~~~~~-~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 349 GEQNLGGSITPDGRSMIMVNR-TNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CCCCcCeeECCCCCEEEEEEe-cCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 233456799999999988653 344 4666787777543 33222 122345899999988766543 33 6666764
Q ss_pred CC
Q psy4876 585 EK 586 (609)
Q Consensus 585 ~~ 586 (609)
..
T Consensus 426 G~ 427 (448)
T PRK04792 426 GR 427 (448)
T ss_pred CC
Confidence 43
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.7e-08 Score=101.81 Aligned_cols=266 Identities=11% Similarity=0.083 Sum_probs=162.5
Q ss_pred CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeC----------CCe
Q psy4876 289 GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTS----------LGT 358 (609)
Q Consensus 289 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~----------dg~ 358 (609)
+.|++.|..+ .+........ ..-..+ ++|||+.|+++.. +..
T Consensus 27 ~~v~ViD~~~-------------------------~~v~g~i~~G--~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~ 78 (352)
T TIGR02658 27 TQVYTIDGEA-------------------------GRVLGMTDGG--FLPNPV-VASDGSFFAHASTVYSRIARGKRTDY 78 (352)
T ss_pred ceEEEEECCC-------------------------CEEEEEEEcc--CCCcee-ECCCCCEEEEEeccccccccCCCCCE
Confidence 7899999987 4443333332 222234 9999998888766 688
Q ss_pred EEEEeCCCCeeEEEecCCCC-c--------eEEEEecCCEEEEEe-c-CCeEEEEEcCCCCeeEEEEccCCCCeEEEEEc
Q psy4876 359 VQLWDVSAKKKCRTMDGHDV-R--------VGALAWNTYILSSGS-R-CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWS 427 (609)
Q Consensus 359 I~iwd~~~~~~~~~l~~h~~-~--------V~~l~~~~~~L~sgs-~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 427 (609)
|.|||+.+.+.+..+..... + ...+.-+|++|+... . +..|.+.|+.++. .+..+.- .+...-...+
T Consensus 79 V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k-vv~ei~v-p~~~~vy~t~ 156 (352)
T TIGR02658 79 VEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA-FVRMMDV-PDCYHIFPTA 156 (352)
T ss_pred EEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc-EEEEEeC-CCCcEEEEec
Confidence 99999999999988874222 1 334444788888765 3 6889999999874 5544442 1222222222
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEE-EEEEcC-CCCcEEEEEeccCCCeEEEEECCCC----
Q psy4876 428 PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVK-AIAWCP-WSPNVLASGGGTADRHIYFWNVSSG---- 501 (609)
Q Consensus 428 pdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~-~l~~sp-~~~~llasggGs~Dg~I~iwd~~t~---- 501 (609)
.+..+ + -+.||......+...... .......+.....++. .-.|.+ ++..++++ ..|.|.+.|+...
T Consensus 157 e~~~~-~-~~~Dg~~~~v~~d~~g~~-~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs----~eG~V~~id~~~~~~~~ 229 (352)
T TIGR02658 157 NDTFF-M-HCRDGSLAKVGYGTKGNP-KIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT----YTGKIFQIDLSSGDAKF 229 (352)
T ss_pred CCccE-E-EeecCceEEEEecCCCce-EEeeeeeecCCccccccCCceEcCCCcEEEEe----cCCeEEEEecCCCccee
Confidence 22222 1 123444444333322100 0001111111000000 003455 77666665 4599999996443
Q ss_pred -ceeEEEcC--------CCCeEEEEEcCCCCeEEEE-Ee-------cCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeC
Q psy4876 502 -ACLDSIDT--------KSQVCALLWNSDYKELVSA-HG-------FAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP 564 (609)
Q Consensus 502 -~~~~~~~~--------~~~v~sl~~s~~g~~l~~~-sG-------~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp 564 (609)
.....+.. ...+.-++++++++.++++ ++ ...+.|.++|..+++.+..+.. ...+..++++|
T Consensus 230 ~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~ 308 (352)
T TIGR02658 230 LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQ 308 (352)
T ss_pred cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECC
Confidence 22332221 1233449999999999984 32 1236899999999999998864 35789999999
Q ss_pred CCC-EEEEEE-CCCCEEEEEcCCCccchhh
Q psy4876 565 DET-TVLSAG-ADETLRLWKIFEKVKSKKK 592 (609)
Q Consensus 565 dg~-~L~s~s-~Dg~I~iWdl~~~~~~~k~ 592 (609)
||+ +|++.. .++.|.+.|..+.+..+..
T Consensus 309 Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 309 DAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 999 888666 5789999999988776654
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.5e-08 Score=101.61 Aligned_cols=260 Identities=15% Similarity=0.179 Sum_probs=166.8
Q ss_pred EEecCCC--eEEEEc----CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 275 IDWSHFN--VLAVAL----GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 275 l~wsp~~--lla~s~----dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
|+++|++ +.++.. ++.|..|++... .+.+..+.+.. .....+.++++|++
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~-----------------------~g~L~~~~~~~~~g~~p~~i~~~~~g 98 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD-----------------------TGTLTLLNSVPSGGSSPCHIAVDPDG 98 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETT-----------------------TTEEEEEEEEEESSSCEEEEEECTTS
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCC-----------------------cceeEEeeeeccCCCCcEEEEEecCC
Confidence 7788875 444444 468888877651 04556666665 56777899999999
Q ss_pred CEEEEEe-CCCeEEEEeCCC-CeeEEE---ec----------CCCCceEEEEe--cCCEEEEEec-CCeEEEEEcCCCCe
Q psy4876 348 YMLGVGT-SLGTVQLWDVSA-KKKCRT---MD----------GHDVRVGALAW--NTYILSSGSR-CGNIVHHDVRSRDH 409 (609)
Q Consensus 348 ~~Lasgs-~dg~I~iwd~~~-~~~~~~---l~----------~h~~~V~~l~~--~~~~L~sgs~-dg~I~iwd~~~~~~ 409 (609)
++|+++. .+|.|.++++.. +..... +. .......++.| +++++++... ...|.+|++.....
T Consensus 99 ~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~ 178 (345)
T PF10282_consen 99 RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTG 178 (345)
T ss_dssp SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-
T ss_pred CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCc
Confidence 9999886 489999999987 333222 21 12345677888 4677766543 45799999976542
Q ss_pred eE---EEE-ccCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCCCccceEeecC------CcccEEEEEEcCCC
Q psy4876 410 KV---ALL-QNHTQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVPGQHTFSTQPIHSLSR------HQAAVKAIAWCPWS 478 (609)
Q Consensus 410 ~~---~~~-~~h~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~------h~~~V~~l~~sp~~ 478 (609)
.+ ..+ .........++|+|+|+++.+.. .++.|.++++..... ....+..+.. .......|+++|+|
T Consensus 179 ~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~ispdg 256 (345)
T PF10282_consen 179 KLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG--SLTEIQTISTLPEGFTGENAPAEIAISPDG 256 (345)
T ss_dssp TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT--EEEEEEEEESCETTSCSSSSEEEEEE-TTS
T ss_pred eEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC--ceeEEEEeeeccccccccCCceeEEEecCC
Confidence 12 122 23456688999999999876665 478899999883211 1122222211 12257899999999
Q ss_pred CcEEEEEeccCCCeEEEEECC--CCce--eEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC--CCCceEEEEe
Q psy4876 479 PNVLASGGGTADRHIYFWNVS--SGAC--LDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKY--PSLVKVAELH 551 (609)
Q Consensus 479 ~~llasggGs~Dg~I~iwd~~--t~~~--~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~--~~~~~~~~l~ 551 (609)
++|+++.. ..+.|.+|++. ++.. +..+.. ......++++|+|++|+++. ..++.|.+|++ .+|.....-.
T Consensus 257 ~~lyvsnr--~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~-~~s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 257 RFLYVSNR--GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVAN-QDSNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp SEEEEEEC--TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEE-TTTTEEEEEEEETTTTEEEEEEE
T ss_pred CEEEEEec--cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEe-cCCCeEEEEEEeCCCCcEEEecc
Confidence 98888874 58899999994 3443 334444 34689999999999999874 47888999976 4555433221
Q ss_pred -CCCCCEEEEEE
Q psy4876 552 -GHSARVLNLAM 562 (609)
Q Consensus 552 -~h~~~V~~l~~ 562 (609)
..-....||.|
T Consensus 334 ~~~~~~p~ci~f 345 (345)
T PF10282_consen 334 SVPIPSPVCIVF 345 (345)
T ss_dssp EEESSSEEEEEE
T ss_pred cccCCCCEEEeC
Confidence 12344566665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.3e-09 Score=112.58 Aligned_cols=143 Identities=20% Similarity=0.267 Sum_probs=124.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEec--CCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMD--GHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
...++-|...|.|.+|++..++....+. .|.+.|.++.|+ -..|.+++.|+.+..|+.... ..+.........+.
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~ 148 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-VIIRIWKEQKPLVS 148 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-eeeeeeccCCCccc
Confidence 3578889999999999999999887776 599999999994 578999999999999999986 47778888888999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCC-----CCcEEEEEeccCCCeEEEEE
Q psy4876 423 GLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW-----SPNVLASGGGTADRHIYFWN 497 (609)
Q Consensus 423 ~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-----~~~llasggGs~Dg~I~iwd 497 (609)
+++.+|||..+++++ +.|.+||+++. +.+..|.+|.++|.++.|--. |.++|.+.. .+.-|.+|-
T Consensus 149 sl~is~D~~~l~~as--~~ik~~~~~~k------evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~--~~r~i~~w~ 218 (541)
T KOG4547|consen 149 SLCISPDGKILLTAS--RQIKVLDIETK------EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA--AERGITVWV 218 (541)
T ss_pred eEEEcCCCCEEEecc--ceEEEEEccCc------eEEEEecCCCcceEEEEEEEeccccccceeeeccc--cccceeEEE
Confidence 999999999999987 68999999998 899999999999999999876 677777764 567777776
Q ss_pred CCC
Q psy4876 498 VSS 500 (609)
Q Consensus 498 ~~t 500 (609)
+..
T Consensus 219 v~~ 221 (541)
T KOG4547|consen 219 VEK 221 (541)
T ss_pred EEc
Confidence 654
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-09 Score=115.57 Aligned_cols=296 Identities=15% Similarity=0.202 Sum_probs=197.2
Q ss_pred cCCceeEEEEEecCC-CeEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEE
Q psy4876 266 IQNDYYLNLIDWSHF-NVLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVA 342 (609)
Q Consensus 266 ~~~~~~v~~l~wsp~-~lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~ 342 (609)
+.+...++|++|+.. |.+| +|.||.+++..+.+..... .. ..+.....+..-.+++ |.+.|.-+.
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~---------~~---~glaa~snLsmNQtLeGH~~sV~vvT 78 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDL---------NK---SGLAAASNLSMNQTLEGHNASVMVVT 78 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcc---------cc---cccccccccchhhhhccCcceEEEEE
Confidence 445677999999986 5555 7889999999887732111 10 0011112333445666 999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEeCCCCeeEEEec--CCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCC
Q psy4876 343 WIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMD--GHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHT 418 (609)
Q Consensus 343 ~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 418 (609)
|+.+.+.|-+...+|.|.||-+-.+.-...+. ...+.|.+++| +|..++....||.|.+=.++... +.-..-..
T Consensus 79 WNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR--IwgKeLkg 156 (1189)
T KOG2041|consen 79 WNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR--IWGKELKG 156 (1189)
T ss_pred eccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce--ecchhcch
Confidence 99999999999999999999998776544433 35577899999 58999999999999888776542 22111122
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC-CCccceE----eecCCcccEEEEEEc--------CCCCcEEEEE
Q psy4876 419 QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHT-FSTQPIH----SLSRHQAAVKAIAWC--------PWSPNVLASG 485 (609)
Q Consensus 419 ~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~-~~~~~~~----~~~~h~~~V~~l~~s--------p~~~~llasg 485 (609)
.....+.|++|.+.++.+-..|.+++||....-.. ....+.. .+......|-.+.|. |+.+.+ +++
T Consensus 157 ~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~l-avc 235 (1189)
T KOG2041|consen 157 QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRL-AVC 235 (1189)
T ss_pred heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEE-EEE
Confidence 33457899999998888888899999997643100 0001111 111122235566664 355444 444
Q ss_pred eccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEec-------CCCeEEEEECCCCceEEEEeCCCCCEE
Q psy4876 486 GGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGF-------AQNQLIIWKYPSLVKVAELHGHSARVL 558 (609)
Q Consensus 486 gGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~-------~dg~I~Iwd~~~~~~~~~l~~h~~~V~ 558 (609)
...|.+.|-.-.+......++.+-.+..+.|+++|..|+++... ..+.|++|. +-|+.+..++.....|+
T Consensus 236 --y~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It 312 (1189)
T KOG2041|consen 236 --YANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCIT 312 (1189)
T ss_pred --EcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceee
Confidence 36788887766655555666777789999999999999987321 123566555 56777888887778899
Q ss_pred EEEEeCCCCEEEEEECCCCEEE
Q psy4876 559 NLAMSPDETTVLSAGADETLRL 580 (609)
Q Consensus 559 ~l~~spdg~~L~s~s~Dg~I~i 580 (609)
+++|-..|-.++.+ .|+.|.+
T Consensus 313 ~lsWEg~gLriA~A-vdsfiyf 333 (1189)
T KOG2041|consen 313 GLSWEGTGLRIAIA-VDSFIYF 333 (1189)
T ss_pred eeEEcCCceEEEEE-ecceEEE
Confidence 99887666555443 3444443
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-09 Score=110.38 Aligned_cols=282 Identities=16% Similarity=0.223 Sum_probs=174.6
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
.|.=+-+.|||-| .|+.-.-..|.+|--.+ ...+..+.| -.|.-+.|||+.
T Consensus 210 nWTetyv~wSP~GTYL~t~Hk~GI~lWGG~~---------------------------f~r~~RF~H-p~Vq~idfSP~E 261 (698)
T KOG2314|consen 210 NWTETYVRWSPKGTYLVTFHKQGIALWGGES---------------------------FDRIQRFYH-PGVQFIDFSPNE 261 (698)
T ss_pred cceeeeEEecCCceEEEEEeccceeeecCcc---------------------------HHHHHhccC-CCceeeecCCcc
Confidence 4445668889887 55555566788886543 445556655 458899999999
Q ss_pred CEEEEEeC-----------CCeEEEEeCCCCeeEEEecCC--CCceE-EEEe--cCCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 348 YMLGVGTS-----------LGTVQLWDVSAKKKCRTMDGH--DVRVG-ALAW--NTYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 348 ~~Lasgs~-----------dg~I~iwd~~~~~~~~~l~~h--~~~V~-~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
+||++-+. ...++|||+.+|...+.+... ...+. -+.| |+.+++.-.. ..|.||+..... .+
T Consensus 262 kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~-ll 339 (698)
T KOG2314|consen 262 KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM-LL 339 (698)
T ss_pred ceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCcee-ee
Confidence 99998542 247999999999988888752 22222 2344 6777776655 467787765421 11
Q ss_pred EEEccCCCCeEEEEEccCCCEEEEEeC-----------------------------------------------------
Q psy4876 412 ALLQNHTQEVCGLKWSPDGRYLASGGN----------------------------------------------------- 438 (609)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~lasgs~----------------------------------------------------- 438 (609)
..-.-.-..|....|+|.+++||.=..
T Consensus 340 d~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~ 419 (698)
T KOG2314|consen 340 DKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSK 419 (698)
T ss_pred cccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccc
Confidence 111111123444445554444433110
Q ss_pred ----CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC-Cc---eeEEEcCC
Q psy4876 439 ----DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS-GA---CLDSIDTK 510 (609)
Q Consensus 439 ----Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t-~~---~~~~~~~~ 510 (609)
-..+.|+.++..+ .++..+. -...|...+|-|.|..+.+..|.....++.+|-+.+ .. ++..++.
T Consensus 420 ~~g~f~n~eIfrireKd-----Ipve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk- 492 (698)
T KOG2314|consen 420 VKGQFSNLEIFRIREKD-----IPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK- 492 (698)
T ss_pred ccceEeeEEEEEeeccC-----CCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-
Confidence 0012233332221 1222222 345678899999998877666556678899998873 22 2333333
Q ss_pred CCeEEEEEcCCCCeEEEEE-ecCCCeEEEEECCCCceEEE-EeCCCCCEEEEEEeCCCCEEEEEEC------CCCEEEEE
Q psy4876 511 SQVCALLWNSDYKELVSAH-GFAQNQLIIWKYPSLVKVAE-LHGHSARVLNLAMSPDETTVLSAGA------DETLRLWK 582 (609)
Q Consensus 511 ~~v~sl~~s~~g~~l~~~s-G~~dg~I~Iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~L~s~s~------Dg~I~iWd 582 (609)
.....+.|+|.|++++++. ++..|.+.++|..-...... ...| ...+.+.|.|.|+|+++++. |.--+||+
T Consensus 493 ~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~t 571 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFT 571 (698)
T ss_pred cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEE
Confidence 5678999999999988753 34688999999874222111 1223 34678999999999999875 66778998
Q ss_pred cCCCcc
Q psy4876 583 IFEKVK 588 (609)
Q Consensus 583 l~~~~~ 588 (609)
+.+...
T Consensus 572 fqGrll 577 (698)
T KOG2314|consen 572 FQGRLL 577 (698)
T ss_pred eecHHH
Confidence 876543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-08 Score=102.96 Aligned_cols=235 Identities=13% Similarity=0.111 Sum_probs=152.6
Q ss_pred cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec------CCCCeEEEEEccCCCEEEEEe-C-CCe
Q psy4876 287 LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE------GNENVCSVAWIQEGYMLGVGT-S-LGT 358 (609)
Q Consensus 287 ~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------h~~~V~~v~~spdg~~Lasgs-~-dg~ 358 (609)
.+..|.+||..+ .+...-..+. .......++++|||++|++.. . +..
T Consensus 75 ~~d~V~v~D~~t-------------------------~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~ 129 (352)
T TIGR02658 75 RTDYVEVIDPQT-------------------------HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPA 129 (352)
T ss_pred CCCEEEEEECcc-------------------------CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCE
Confidence 578999999988 4433222221 122344789999999999876 3 689
Q ss_pred EEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeE-E---EEccCCCCeE-EEEEcc-CCCE
Q psy4876 359 VQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKV-A---LLQNHTQEVC-GLKWSP-DGRY 432 (609)
Q Consensus 359 I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~-~---~~~~h~~~V~-~l~~sp-dg~~ 432 (609)
|.|.|+.+++.+.++.--. ...-+......+.+-+.||......+....... . .+......+. .-.|.+ +|++
T Consensus 130 V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~ 208 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL 208 (352)
T ss_pred EEEEECCCCcEEEEEeCCC-CcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE
Confidence 9999999999999887532 222223333333344556666554444332211 1 1111000000 003455 8887
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCccceEeecC-------CcccEEEEEEcCCCCcEEEEEec-------cCCCeEEEEEC
Q psy4876 433 LASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-------HQAAVKAIAWCPWSPNVLASGGG-------TADRHIYFWNV 498 (609)
Q Consensus 433 lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-------h~~~V~~l~~sp~~~~llasggG-------s~Dg~I~iwd~ 498 (609)
+.+... |.|++.|+....... ......+.. ..+.+.-++++++++.+++...+ ...+.|.++|.
T Consensus 209 ~~vs~e-G~V~~id~~~~~~~~-~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 209 VWPTYT-GKIFQIDLSSGDAKF-LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEEecC-CeEEEEecCCCccee-cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 777666 999999975542211 122222211 23344559999999988874311 11268999999
Q ss_pred CCCceeEEEcCCCCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceEEEE
Q psy4876 499 SSGACLDSIDTKSQVCALLWNSDYK-ELVSAHGFAQNQLIIWKYPSLVKVAEL 550 (609)
Q Consensus 499 ~t~~~~~~~~~~~~v~sl~~s~~g~-~l~~~sG~~dg~I~Iwd~~~~~~~~~l 550 (609)
.+++.+..+.....+..+++++|++ .|+++.+ .++.|.++|..+++.+..+
T Consensus 287 ~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~-~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 287 KTGKRLRKIELGHEIDSINVSQDAKPLLYALST-GDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC-CCCcEEEEECcCCeEEeee
Confidence 9999999999999999999999999 6666543 6889999999999999887
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-09 Score=117.10 Aligned_cols=283 Identities=15% Similarity=0.202 Sum_probs=194.1
Q ss_pred EEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC---
Q psy4876 272 LNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG--- 347 (609)
Q Consensus 272 v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg--- 347 (609)
.++++|+|.|++|.|....|.+-|..+ .+.+..++ |...|+.|.|.|..
T Consensus 18 ~~A~Dw~~~GLiAygshslV~VVDs~s---------------------------~q~iqsie~h~s~V~~VrWap~~~p~ 70 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSHSLVSVVDSRS---------------------------LQLIQSIELHQSAVTSVRWAPAPSPR 70 (1062)
T ss_pred ccccccCccceEEEecCceEEEEehhh---------------------------hhhhhccccCccceeEEEeccCCCch
Confidence 578999999999999999999999865 45566666 89999999998731
Q ss_pred ---------CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-----c-CCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 348 ---------YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-----N-TYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 348 ---------~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-----~-~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
-.||++...|.|.|||...+..+..+..|...+..++| + .++|++-.....|.+|+..+++ ...
T Consensus 71 ~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~-k~W 149 (1062)
T KOG1912|consen 71 DLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE-KFW 149 (1062)
T ss_pred hccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc-eee
Confidence 36778888899999999999989999999999999999 2 3678888888899999999985 555
Q ss_pred EEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCC-CCccceEeecCCcc-----------------------
Q psy4876 413 LLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHT-FSTQPIHSLSRHQA----------------------- 467 (609)
Q Consensus 413 ~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~-~~~~~~~~~~~h~~----------------------- 467 (609)
..........|+.+.| |.+.|..-+..|.|.+-+.-..... ...+..+.-..|..
T Consensus 150 k~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~f 229 (1062)
T KOG1912|consen 150 KYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYF 229 (1062)
T ss_pred ccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhH
Confidence 5544445677799999 7777777777788877765432211 11122222222221
Q ss_pred --cEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCC-CeEEEEEcCC--CCeEEEEEecCCCeEEEEECC
Q psy4876 468 --AVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKS-QVCALLWNSD--YKELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 468 --~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~-~v~sl~~s~~--g~~l~~~sG~~dg~I~Iwd~~ 542 (609)
..-.++|+|.-++++... ..+.+.++|++-..++..+.... .+.-+.|-|+ ...|++.+ .+|.+.||--+
T Consensus 230 ity~a~faf~p~~rn~lfi~---~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH--~nG~ltirvrk 304 (1062)
T KOG1912|consen 230 ITYCAQFAFSPHWRNILFIT---FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLH--SNGRLTIRVRK 304 (1062)
T ss_pred HHHHHhhhcChhhhceEEEE---eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEe--cCCeEEEEEee
Confidence 012356788766666654 68999999999888888776443 3444555555 45566655 89999999754
Q ss_pred CC----------------ceEEEEeC-CCCCEEEEEEeCC-CCEEEEEECCCCEEEEEcCCCc
Q psy4876 543 SL----------------VKVAELHG-HSARVLNLAMSPD-ETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 543 ~~----------------~~~~~l~~-h~~~V~~l~~spd-g~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
.. +.+..+.. .+-.+......|. ...++.--.+|.+.+|.+.++.
T Consensus 305 ~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 305 EEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred ccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence 31 11111111 1112222333443 3445555567889999998644
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.7e-10 Score=124.20 Aligned_cols=193 Identities=19% Similarity=0.249 Sum_probs=149.9
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCc------eEEEEecCCEEEEEecCCeEEEEEcCCCCe
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVR------VGALAWNTYILSSGSRCGNIVHHDVRSRDH 409 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~------V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~ 409 (609)
+.|....+..+...++.++.+..+.+||...+.....+...... +...+++.-++++|+.-+.|.+|+.....
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn- 166 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN- 166 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-
Confidence 44555555566788999999999999999877666665532211 11122245789999999999999998443
Q ss_pred eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC
Q psy4876 410 KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA 489 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~ 489 (609)
.-..+.+|.+.|..+.|+-||.++++.++|.++++|++++.. .......+|.+.|..++|+|+ .+++++ .
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~-----~~~~~~fgHsaRvw~~~~~~n---~i~t~g--e 236 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSRE-----VLGCTGFGHSARVWACCFLPN---RIITVG--E 236 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccc-----ccCcccccccceeEEEEeccc---eeEEec--c
Confidence 333688999999999999999999999999999999999884 223466789999999999996 566654 8
Q ss_pred CCeEEEEECCCCceeEEEcCC--CCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q psy4876 490 DRHIYFWNVSSGACLDSIDTK--SQVCALLWNSDYKELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 490 Dg~I~iwd~~t~~~~~~~~~~--~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~ 542 (609)
|.+.++|+.. ++.+..++.+ ..+..++..++...+++ +..|+.+++||+.
T Consensus 237 dctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT--~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 237 DCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVT--GGNDSTLKLWDLN 288 (967)
T ss_pred ceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEe--eccCcchhhhhhh
Confidence 9999999654 4555566655 37999999998888888 5589999999974
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.6e-09 Score=111.12 Aligned_cols=186 Identities=16% Similarity=0.195 Sum_probs=149.3
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeEEEecC---CCCceEEEEec----------------------CCEEEEEecCCeE
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKKCRTMDG---HDVRVGALAWN----------------------TYILSSGSRCGNI 399 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~---h~~~V~~l~~~----------------------~~~L~sgs~dg~I 399 (609)
|.+.++|....||.++|||...++....+.. -.+...+..|. ...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4458999999999999999999888777653 23445555551 2467788889999
Q ss_pred EEEEcCCCCeeEEEE--ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCC
Q psy4876 400 VHHDVRSRDHKVALL--QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW 477 (609)
Q Consensus 400 ~iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 477 (609)
.+|++..++ ....+ ..|.+.|.++.++.+-..|.+++.|+.+..|+.... ..+..+......+.+++.+||
T Consensus 83 ~~ys~~~g~-it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~------~~~~~~~~~~~~~~sl~is~D 155 (541)
T KOG4547|consen 83 LLYSVAGGE-ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK------VIIRIWKEQKPLVSSLCISPD 155 (541)
T ss_pred EEEEecCCe-EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc------eeeeeeccCCCccceEEEcCC
Confidence 999999875 33333 479999999999999889999999999999999987 677888888888999999999
Q ss_pred CCcEEEEEeccCCCeEEEEECCCCceeEEEcCCC-CeEEEEEcCC-----CCeEEEEEecCCCeEEEEECCC
Q psy4876 478 SPNVLASGGGTADRHIYFWNVSSGACLDSIDTKS-QVCALLWNSD-----YKELVSAHGFAQNQLIIWKYPS 543 (609)
Q Consensus 478 ~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~-~v~sl~~s~~-----g~~l~~~sG~~dg~I~Iwd~~~ 543 (609)
+. +++++ .+.|++||+.+++.+..|.+|. .|.++.|... |.++++..+ .+..+.+|-...
T Consensus 156 ~~-~l~~a----s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~-~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 156 GK-ILLTA----SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA-AERGITVWVVEK 221 (541)
T ss_pred CC-EEEec----cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc-cccceeEEEEEc
Confidence 75 55554 6899999999999999999875 8999999877 788877543 455677776543
|
|
| >PF08145 BOP1NT: BOP1NT (NUC169) domain; InterPro: IPR012953 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-12 Score=126.43 Aligned_cols=92 Identities=24% Similarity=0.414 Sum_probs=78.8
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCCccccccccccCCCC--CCCCccHHHHHHHHHhHhcCCCCCCceEEeecCCCCCC
Q psy4876 89 NPNTPSAKSKTPSGGDRYIPNRSAIDTELSHYLLTRDENM--EDLSPSEREKRKAMSELVHGKDIQKSRVLAFQNKAPPP 166 (609)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (609)
...-||||.++|+|.++||| ++|||+|++|.. +.++|++|+ ..++++++..++ +|++|. .+.
T Consensus 155 ~~~ipAPK~~LPgh~eSYNP--------P~EYL~~~~E~~~w~~~~pedR~-~~fiP~k~~sLR----~Vp~Y~---~~i 218 (260)
T PF08145_consen 155 PMHIPAPKLKLPGHAESYNP--------PPEYLPTEEEKKEWEEMDPEDRK-KNFIPQKFDSLR----KVPAYE---NFI 218 (260)
T ss_pred CCCCCCCCCCCCCCccccCC--------chHhccCHHHHHHHHhcCchhcc-ccccchhhhhhh----ccchHH---HHH
Confidence 44489999999999999999 999999998877 888998888 479999999988 999999 566
Q ss_pred CCCccchhhhhhhccccCCccceeeeeeeecccchhhhhhhhhhHHhhhhhhheee
Q psy4876 167 PDGYQNSLKVALNSAITSSPEMKIWKISVHQNVKSVKLCQNLFMERIFKSLEYLLF 222 (609)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~e~~~~~~~~~~~ 222 (609)
.|+|++||+ || ||++....+.......++.
T Consensus 219 ~ErFeRCLD-LY-------------------------LcPR~~k~rlnidPesLlP 248 (260)
T PF08145_consen 219 KERFERCLD-LY-------------------------LCPRVRKKRLNIDPESLLP 248 (260)
T ss_pred HHHHHHhhh-hh-------------------------cCcHhhcccCCCCHHHhCC
Confidence 899999999 99 8888876666666665554
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This N-terminal domain is found in BOP1-like WD40 proteins. Bop1 is a nucleolar protein involved in rRNA processing, thereby controlling the cell cycle []. It is required for the maturation of the 25S and 5.8S ribosomal RNAs. It may serve as an essential factor in ribosome formation that coordinates processing of the spacer regions in pre-rRNA. The Pes1-Bop1 complex has several components: BOP1, GRWD1, PES1, ORC6L, and RPL3 and is involved in ribosome biogenesis and altered chromosome segregation. The overexpression of BOP1 increases the percentage of multipolar spindles in human cells. Deregulation of the BOP1 pathway may contribute to colorectal tumourigenesis in humans []. Elevated levels of Bop1 induces Bop1/WDR12 and Bop1/Pes1 subcomplexes and the assembly and integrity of the PeBoW complex is highly sensitive to changes in Bop1 protein levels []. Nop7p-Erb1p-Ytm1p, found in yeast, is potentially the homologous complex of Pes1-Bop1-WDR12 as it is involved in the control of ribosome biogenesis and S phase entry. The integrity of the PeBoW complex is required for ribosome biogenesis and cell proliferation in mammalian cells []. In Giardia, the species specific cytoskeleton protein, beta-giardin, interacts with Bop1 []. ; GO: 0006364 rRNA processing, 0005634 nucleus |
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.6e-09 Score=101.57 Aligned_cols=196 Identities=17% Similarity=0.171 Sum_probs=137.9
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEeCCCCee--EEEecCCCCceEEEEe---cCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKK--CRTMDGHDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 338 V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
..++.|++.+..++++..+|.+.+-+...... ++..+.|.-.++...| +++++++|+.||.+..||++.....+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 56788999999999999999999666555443 4478899999999999 479999999999999999995544444
Q ss_pred E-EccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcE-EEEEeccC
Q psy4876 413 L-LQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNV-LASGGGTA 489 (609)
Q Consensus 413 ~-~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-lasggGs~ 489 (609)
. .+-|...|++|.-+| .+.++++|+.|-.|++||.++.. +++..-. -.+.|..+.++|.-... ++++ .
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~-----kPl~~~~-v~GGVWRi~~~p~~~~~lL~~C---M 274 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG-----KPLFKAK-VGGGVWRIKHHPEIFHRLLAAC---M 274 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc-----CccccCc-cccceEEEEecchhhhHHHHHH---H
Confidence 3 567899999999887 67899999999999999999653 4554433 34789999999975433 3333 4
Q ss_pred CCeEEEEECCCCcee--EEEcC----CCCeEEEEEcCCCCeEEEEEecCCCeEE-EEECCC
Q psy4876 490 DRHIYFWNVSSGACL--DSIDT----KSQVCALLWNSDYKELVSAHGFAQNQLI-IWKYPS 543 (609)
Q Consensus 490 Dg~I~iwd~~t~~~~--~~~~~----~~~v~sl~~s~~g~~l~~~sG~~dg~I~-Iwd~~~ 543 (609)
-.-.+|.++..+... ..+.. ++-+..-.|.....++++++ +.|+.++ +|-.-+
T Consensus 275 h~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs-FYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 275 HNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS-FYDKKIRQLWLHIT 334 (339)
T ss_pred hcCceEEEecccccchheeeeccccccceeeccccccccceeeeee-ccccceeeeeeecc
Confidence 455666666543321 12222 22334444544445677765 4565543 775443
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-07 Score=110.13 Aligned_cols=279 Identities=16% Similarity=0.217 Sum_probs=178.0
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEE----eCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEc
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLW----NGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWI 344 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iW----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~s 344 (609)
.|-++++-++. ++.+..+|.|.+. +... ..++.+-.+ +..|.+++||
T Consensus 77 ~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~-------------------------~~~E~VG~v--d~GI~a~~WS 129 (928)
T PF04762_consen 77 KIVSFQYLADSESLCIALASGDIILVREDPDPDE-------------------------DEIEIVGSV--DSGILAASWS 129 (928)
T ss_pred cEEEEEeccCCCcEEEEECCceEEEEEccCCCCC-------------------------ceeEEEEEE--cCcEEEEEEC
Confidence 46668887763 7778889999999 5555 555555554 6889999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCC---------------C--------CeeEEEecC------------------------CC
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVS---------------A--------KKKCRTMDG------------------------HD 377 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~---------------~--------~~~~~~l~~------------------------h~ 377 (609)
||+..||..+.+|+|.+.+-. . |+...+|.| +.
T Consensus 130 PD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~d 209 (928)
T PF04762_consen 130 PDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWD 209 (928)
T ss_pred CCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccC
Confidence 999999999999998876421 0 111111111 22
Q ss_pred CceEEEEe--cCCEEEEEec---C---CeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeC---CCcEEEEe
Q psy4876 378 VRVGALAW--NTYILSSGSR---C---GNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGN---DNLLNIWS 446 (609)
Q Consensus 378 ~~V~~l~~--~~~~L~sgs~---d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~---Dg~I~iwd 446 (609)
..-..|+| ||.++++.+- . ..|+||+-+ + ....+-..-.+--.+++|-|.|++||+.-. ...|.+|.
T Consensus 210 d~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G-~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE 287 (928)
T PF04762_consen 210 DGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-G-ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE 287 (928)
T ss_pred CCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-c-eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe
Confidence 34567889 7889988774 3 468899876 2 222222222333456899999999998765 35677777
Q ss_pred CCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce--eEEEc--CCCCeEEEEEcCCC
Q psy4876 447 GVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC--LDSID--TKSQVCALLWNSDY 522 (609)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~--~~~~~--~~~~v~sl~~s~~g 522 (609)
-+...+. +....+......|..|.|++++. +||.. ....|.+|-..+..- .+.+. ....+..+.|+|..
T Consensus 288 rNGLrhg---eF~l~~~~~~~~v~~l~Wn~ds~-iLAv~---~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~ 360 (928)
T PF04762_consen 288 RNGLRHG---EFTLRFDPEEEKVIELAWNSDSE-ILAVW---LEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK 360 (928)
T ss_pred cCCcEee---eEecCCCCCCceeeEEEECCCCC-EEEEE---ecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence 5543211 21122224566899999999985 55554 244499999887652 23333 33455669999865
Q ss_pred Ce-EEEEEecCCCeEEEEEC----CCC--------ceEEEEe-----------------------CCCCCEEEEEEeCCC
Q psy4876 523 KE-LVSAHGFAQNQLIIWKY----PSL--------VKVAELH-----------------------GHSARVLNLAMSPDE 566 (609)
Q Consensus 523 ~~-l~~~sG~~dg~I~Iwd~----~~~--------~~~~~l~-----------------------~h~~~V~~l~~spdg 566 (609)
.. |.+.+ .+|.+.++++ ..+ ..+..+. .....|.+++|++++
T Consensus 361 p~~L~v~t--~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~ 438 (928)
T PF04762_consen 361 PLRLHVLT--SNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN 438 (928)
T ss_pred CCEEEEEe--cCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC
Confidence 44 33332 3355544432 110 0111111 124679999999999
Q ss_pred CEEEEEECCCCEEEEEcCCCc
Q psy4876 567 TTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 567 ~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
..+++...||.|.+|......
T Consensus 439 ~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 439 SRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred CeEEEEECCCCEEEEEecCCC
Confidence 889999999999999976544
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-08 Score=100.88 Aligned_cols=291 Identities=14% Similarity=0.280 Sum_probs=182.8
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCce--EEecCCccccccccccccccceeeeeeecCCCCeEEEEEccC
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKY--IICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQE 346 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spd 346 (609)
.+.+|.|...| +.+|..+|.|.++.-.......| ...|..+ ......+..++-...|..+.|.++
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqsh-----------epEFDYLkSleieEKinkIrw~~~ 95 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSH-----------EPEFDYLKSLEIEEKINKIRWLDD 95 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeecc-----------CcccchhhhhhhhhhhhhceecCC
Confidence 47788998876 55577789999987654221111 0111100 022233333444578999999987
Q ss_pred C--CEEEEEeCCCeEEEEeCCCCeeE-----------------------------------EEe-cCCCCceEEEEec--
Q psy4876 347 G--YMLGVGTSLGTVQLWDVSAKKKC-----------------------------------RTM-DGHDVRVGALAWN-- 386 (609)
Q Consensus 347 g--~~Lasgs~dg~I~iwd~~~~~~~-----------------------------------~~l-~~h~~~V~~l~~~-- 386 (609)
+ ..++..+.|.+|++|.+...... +.+ .+|...|.+|+++
T Consensus 96 ~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD 175 (433)
T KOG1354|consen 96 GNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD 175 (433)
T ss_pred CCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc
Confidence 6 56677889999999987532110 001 2577888899994
Q ss_pred CCEEEEEecCCeEEEEEcCCCCee--EEEEccC-----CCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccc
Q psy4876 387 TYILSSGSRCGNIVHHDVRSRDHK--VALLQNH-----TQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQP 458 (609)
Q Consensus 387 ~~~L~sgs~dg~I~iwd~~~~~~~--~~~~~~h-----~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~ 458 (609)
...+++ ..|=.|-+|++....+. +..++.+ +.-|++..|+| ..++|+..+..|+|++-|++..........
T Consensus 176 ~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 176 KETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred cceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 344444 45678999998765433 2233333 34688899999 566888888899999999995421110011
Q ss_pred e----------EeecCCcccEEEEEEcCCCCcEEEEEeccCC-CeEEEEECC-CCceeEEEcCCC---------------
Q psy4876 459 I----------HSLSRHQAAVKAIAWCPWSPNVLASGGGTAD-RHIYFWNVS-SGACLDSIDTKS--------------- 511 (609)
Q Consensus 459 ~----------~~~~~h~~~V~~l~~sp~~~~llasggGs~D-g~I~iwd~~-t~~~~~~~~~~~--------------- 511 (609)
+ .-+.+--..|..+.|++.|+++++ .| -+|++||+. ..+++.++..+.
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryils-----RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILS-----RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEE-----eccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence 1 111222346889999999976554 35 899999995 555665554331
Q ss_pred -CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE-------------------EEEe--CC-------------CCC
Q psy4876 512 -QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKV-------------------AELH--GH-------------SAR 556 (609)
Q Consensus 512 -~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~-------------------~~l~--~h-------------~~~ 556 (609)
.-..++|+.++..+++ |+-.+..++|+...+... .... |. ...
T Consensus 330 fdKFec~~sg~~~~v~T--Gsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kk 407 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMT--GSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKK 407 (433)
T ss_pred hheeEEEEcCCcceEec--ccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhH
Confidence 2356899999999998 668899999985433211 0000 11 123
Q ss_pred EEEEEEeCCCCEEEEEECCCCEEEE
Q psy4876 557 VLNLAMSPDETTVLSAGADETLRLW 581 (609)
Q Consensus 557 V~~l~~spdg~~L~s~s~Dg~I~iW 581 (609)
+.+.+|+|....+|.+..++ +.||
T Consensus 408 ilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 408 ILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred HHhhccCCccceeeeeecCc-eEEe
Confidence 56778999999888887654 4444
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.1e-08 Score=113.48 Aligned_cols=243 Identities=10% Similarity=0.047 Sum_probs=157.9
Q ss_pred EEEEEccC-CCEEEEEeCCCeEEEEeCCCCeeEEEecC-C-------------CCceEEEEec--CCEEEEEe-cCCeEE
Q psy4876 339 CSVAWIQE-GYMLGVGTSLGTVQLWDVSAKKKCRTMDG-H-------------DVRVGALAWN--TYILSSGS-RCGNIV 400 (609)
Q Consensus 339 ~~v~~spd-g~~Lasgs~dg~I~iwd~~~~~~~~~l~~-h-------------~~~V~~l~~~--~~~L~sgs-~dg~I~ 400 (609)
..+++++. +..+++-+.++.|++||... ..+..+.+ . -.....++++ ++.|+++. .+..|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46888875 55666667788999999864 44444432 1 1134667774 55555544 456799
Q ss_pred EEEcCCCCeeEEEEccC-----------------CCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCC-c-cceE
Q psy4876 401 HHDVRSRDHKVALLQNH-----------------TQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFS-T-QPIH 460 (609)
Q Consensus 401 iwd~~~~~~~~~~~~~h-----------------~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~-~-~~~~ 460 (609)
++|+.++ .+.++.+. -....+++|+| ++.++++.+.++.|++||..++..... . ....
T Consensus 650 ~id~~~~--~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNE--TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEecCCC--EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9998765 34433211 01245799999 566677777789999999876521000 0 0000
Q ss_pred eecC------CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc--------------C--------CCC
Q psy4876 461 SLSR------HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID--------------T--------KSQ 512 (609)
Q Consensus 461 ~~~~------h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~--------------~--------~~~ 512 (609)
...+ .-.....|+++|++..++++. +.++.|++||+.++....... . ...
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVAD--s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIAD--SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEE--CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 0000 112346799999998787776 368999999998765321110 0 013
Q ss_pred eEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe-------------CCCCCEEEEEEeCCCCEEEEEECCCCEE
Q psy4876 513 VCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH-------------GHSARVLNLAMSPDETTVLSAGADETLR 579 (609)
Q Consensus 513 v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~-------------~h~~~V~~l~~spdg~~L~s~s~Dg~I~ 579 (609)
...++++++|..+++ ...++.|++||..++....... +.-.....|+++++|+++++-+.++.|+
T Consensus 806 P~Gvavd~dG~LYVA--Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 806 PLGVLCAKDGQIYVA--DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred CceeeEeCCCcEEEE--ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 468899999986665 4579999999998776543221 1123577899999999989888999999
Q ss_pred EEEcCCCcc
Q psy4876 580 LWKIFEKVK 588 (609)
Q Consensus 580 iWdl~~~~~ 588 (609)
+||+.++..
T Consensus 884 vid~~~~~~ 892 (1057)
T PLN02919 884 YLDLNKGEA 892 (1057)
T ss_pred EEECCCCcc
Confidence 999988654
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.2e-10 Score=129.81 Aligned_cols=192 Identities=16% Similarity=0.242 Sum_probs=152.1
Q ss_pred EEEEEecCC--CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCE
Q psy4876 272 LNLIDWSHF--NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYM 349 (609)
Q Consensus 272 v~~l~wsp~--~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~ 349 (609)
|.++.=+|. ..++++.||.|++|.... +......+......|+.+.|+.+|+.
T Consensus 2211 v~r~~sHp~~~~Yltgs~dgsv~~~~w~~-------------------------~~~v~~~rt~g~s~vtr~~f~~qGnk 2265 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGSQDGSVRMFEWGH-------------------------GQQVVCFRTAGNSRVTRSRFNHQGNK 2265 (2439)
T ss_pred eeeecCCCCCceEEecCCCceEEEEeccC-------------------------CCeEEEeeccCcchhhhhhhcccCCc
Confidence 555666665 488999999999999866 33333333335588999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEe---cCCeEEEEEcCCCCeeEEEEccCCCCeEEEEE
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGS---RCGNIVHHDVRSRDHKVALLQNHTQEVCGLKW 426 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs---~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 426 (609)
+.++..||.+.+|.+. .+.....+.|......+.|-+..+++++ .++.+.+||.-.....-..-..|.+.++++++
T Consensus 2266 ~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~ 2344 (2439)
T KOG1064|consen 2266 FGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAY 2344 (2439)
T ss_pred eeeeccCCceeecccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEE
Confidence 9999999999999987 5777788889999999999778888775 46789999976543222333789999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEE
Q psy4876 427 SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDS 506 (609)
Q Consensus 427 spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~ 506 (609)
-|..++|++|+.+|.|++||++.. +.++.+.. ++ .+..+++| +..|.|+||++..-..+++
T Consensus 2345 ~P~~qllisggr~G~v~l~D~rqr------ql~h~~~~---------~~--~~~~f~~~--ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2345 APKHQLLISGGRKGEVCLFDIRQR------QLRHTFQA---------LD--TREYFVTG--SSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred cCcceEEEecCCcCcEEEeehHHH------HHHHHhhh---------hh--hhheeecc--CcccceEEEEccccchhhc
Confidence 999999999999999999999976 56665543 44 34577776 5899999999988777766
Q ss_pred Ec
Q psy4876 507 ID 508 (609)
Q Consensus 507 ~~ 508 (609)
+.
T Consensus 2406 ~p 2407 (2439)
T KOG1064|consen 2406 FP 2407 (2439)
T ss_pred Cc
Confidence 54
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-07 Score=98.60 Aligned_cols=268 Identities=13% Similarity=0.037 Sum_probs=162.9
Q ss_pred CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEE
Q psy4876 281 NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQ 360 (609)
Q Consensus 281 ~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~ 360 (609)
.+++++.++.|+.+|..+ ++..-...+. ......+. .++..+++++.+|.|.
T Consensus 67 ~v~v~~~~g~v~a~d~~t-------------------------G~~~W~~~~~-~~~~~~p~--v~~~~v~v~~~~g~l~ 118 (377)
T TIGR03300 67 KVYAADADGTVVALDAET-------------------------GKRLWRVDLD-ERLSGGVG--ADGGLVFVGTEKGEVI 118 (377)
T ss_pred EEEEECCCCeEEEEEccC-------------------------CcEeeeecCC-CCcccceE--EcCCEEEEEcCCCEEE
Confidence 466777789999999887 5433222222 11111222 2467888899999999
Q ss_pred EEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCe-----EEEEEccCCCEEEE
Q psy4876 361 LWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEV-----CGLKWSPDGRYLAS 435 (609)
Q Consensus 361 iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----~~l~~spdg~~las 435 (609)
.+|..+|+.+................+..++.++.+|.|+.||..++. .+.........+ .+... .+..++.
T Consensus 119 ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~-~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~ 195 (377)
T TIGR03300 119 ALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGE-RLWTYSRVTPALTLRGSASPVI--ADGGVLV 195 (377)
T ss_pred EEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCc-eeeEEccCCCceeecCCCCCEE--ECCEEEE
Confidence 999999988776653332222233356677888889999999998874 444443222111 11111 1346778
Q ss_pred EeCCCcEEEEeCCCCCCCCCccceEeecCCc--c---cE-EEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC
Q psy4876 436 GGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQ--A---AV-KAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT 509 (609)
Q Consensus 436 gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~--~---~V-~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~ 509 (609)
+..++.+..+|..+++..+.... ....+.. . .+ ....+. +..+++.+ .++.++.||..+|+.+.....
T Consensus 196 ~~~~g~v~ald~~tG~~~W~~~~-~~~~g~~~~~~~~~~~~~p~~~--~~~vy~~~---~~g~l~a~d~~tG~~~W~~~~ 269 (377)
T TIGR03300 196 GFAGGKLVALDLQTGQPLWEQRV-ALPKGRTELERLVDVDGDPVVD--GGQVYAVS---YQGRVAALDLRSGRVLWKRDA 269 (377)
T ss_pred ECCCCEEEEEEccCCCEeeeecc-ccCCCCCchhhhhccCCccEEE--CCEEEEEE---cCCEEEEEECCCCcEEEeecc
Confidence 88889999999998843221100 0000000 0 00 011121 33455543 689999999999988776653
Q ss_pred CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCC-CEEEEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 510 KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSA-RVLNLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 510 ~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~-~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
.. ..... ..+..++++ ..+|.|..+|..+++.+........ .+..... .+..|++++.||.|++||..+++.
T Consensus 270 ~~-~~~p~--~~~~~vyv~--~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 270 SS-YQGPA--VDDNRLYVT--DADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred CC-ccCce--EeCCEEEEE--CCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 32 11222 245666664 3799999999999988765532111 1222222 467899999999999999988876
Q ss_pred chhh
Q psy4876 589 SKKK 592 (609)
Q Consensus 589 ~~k~ 592 (609)
.-+.
T Consensus 343 ~~~~ 346 (377)
T TIGR03300 343 VARL 346 (377)
T ss_pred EEEE
Confidence 5443
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.1e-09 Score=116.92 Aligned_cols=181 Identities=16% Similarity=0.258 Sum_probs=140.1
Q ss_pred CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCC-----CeEEEEEccCCCEEEEEeC
Q psy4876 281 NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNE-----NVCSVAWIQEGYMLGVGTS 355 (609)
Q Consensus 281 ~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~-----~V~~v~~spdg~~Lasgs~ 355 (609)
.++.+..++.+.|||... +. .+.++.+.. ...-+-++++.-++++|+.
T Consensus 101 ~i~l~~~~ns~~i~d~~~-------------------------~~--~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv 153 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSKN-------------------------SS--VLSKIQSDERCTLYSSLIIGDSAEELYIASGSV 153 (967)
T ss_pred eEEEEEcCceEEEEeccc-------------------------Cc--eehhcCCCceEEEEeEEEEeccCcEEEEEeccc
Confidence 466688889999999876 21 111221111 1222344566679999999
Q ss_pred CCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEE
Q psy4876 356 LGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYL 433 (609)
Q Consensus 356 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (609)
-+.|.+|+....+.-..+.+|.+.|..+.| +|.++++.++|.++++|++.+.+......-+|+..|..++|+|+ .+
T Consensus 154 ~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i 231 (967)
T KOG0974|consen 154 FGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RI 231 (967)
T ss_pred cccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--ee
Confidence 999999999744444468899999999999 89999999999999999999986555577789999999999998 89
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCccceEeecCCcc-cEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 434 ASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA-AVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 434 asgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
++++.|-+.++|+.... .+..+.+|.. .|..++..+.. .+++++| .|+.+++||+..
T Consensus 232 ~t~gedctcrvW~~~~~-------~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g--~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVNGT-------QLEVYDEHSGKGIWKIAVPIGV-IIKVTGG--NDSTLKLWDLNG 289 (967)
T ss_pred EEeccceEEEEEecccc-------eehhhhhhhhcceeEEEEcCCc-eEEEeec--cCcchhhhhhhc
Confidence 99999999999976643 3446777754 58888888865 5666765 899999999854
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-07 Score=98.84 Aligned_cols=253 Identities=16% Similarity=0.073 Sum_probs=155.7
Q ss_pred CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEE
Q psy4876 281 NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQ 360 (609)
Q Consensus 281 ~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~ 360 (609)
.+++++.++.|+.+|..+ ++..-...+ .+.+.+.-.. .+..+++++.+|.|.
T Consensus 107 ~v~v~~~~g~l~ald~~t-------------------------G~~~W~~~~--~~~~~~~p~v-~~~~v~v~~~~g~l~ 158 (377)
T TIGR03300 107 LVFVGTEKGEVIALDAED-------------------------GKELWRAKL--SSEVLSPPLV-ANGLVVVRTNDGRLT 158 (377)
T ss_pred EEEEEcCCCEEEEEECCC-------------------------CcEeeeecc--CceeecCCEE-ECCEEEEECCCCeEE
Confidence 366677889999999887 443322222 2222211111 245677788899999
Q ss_pred EEeCCCCeeEEEecCCCCce-----EEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccC-C---CC---eEEEEEcc
Q psy4876 361 LWDVSAKKKCRTMDGHDVRV-----GALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNH-T---QE---VCGLKWSP 428 (609)
Q Consensus 361 iwd~~~~~~~~~l~~h~~~V-----~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h-~---~~---V~~l~~sp 428 (609)
.||..+|+.+..+......+ .+....+..++.+..+|.+..+|..++. .+...... . .. +..+.-+|
T Consensus 159 a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~-~~W~~~~~~~~g~~~~~~~~~~~~~p 237 (377)
T TIGR03300 159 ALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQ-PLWEQRVALPKGRTELERLVDVDGDP 237 (377)
T ss_pred EEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCC-EeeeeccccCCCCCchhhhhccCCcc
Confidence 99999998877765433221 1122234577888889999999998874 33322110 0 00 00011111
Q ss_pred --CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEE
Q psy4876 429 --DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDS 506 (609)
Q Consensus 429 --dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~ 506 (609)
.+..+++++.+|.++.||..++ +.+..... . ....... .+..+++. +.+|.|+.+|..+|+.+..
T Consensus 238 ~~~~~~vy~~~~~g~l~a~d~~tG------~~~W~~~~-~-~~~~p~~--~~~~vyv~---~~~G~l~~~d~~tG~~~W~ 304 (377)
T TIGR03300 238 VVDGGQVYAVSYQGRVAALDLRSG------RVLWKRDA-S-SYQGPAV--DDNRLYVT---DADGVVVALDRRSGSELWK 304 (377)
T ss_pred EEECCEEEEEEcCCEEEEEECCCC------cEEEeecc-C-CccCceE--eCCEEEEE---CCCCeEEEEECCCCcEEEc
Confidence 3557888888999999999988 33333321 1 1112222 24445554 3799999999999988766
Q ss_pred EcC-CC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEE-EEEEeCCCCEEEEEECCCCEEEE
Q psy4876 507 IDT-KS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVL-NLAMSPDETTVLSAGADETLRLW 581 (609)
Q Consensus 507 ~~~-~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~L~s~s~Dg~I~iW 581 (609)
... .. ...+... .+..+++ +..+|.|+++|..+++.+..+..+...+. ...+. + ..|+.++.||.|..|
T Consensus 305 ~~~~~~~~~ssp~i--~g~~l~~--~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 305 NDELKYRQLTAPAV--VGGYLVV--GDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred cccccCCccccCEE--ECCEEEE--EeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 532 22 2222222 3556776 44899999999999999998876664432 22332 3 358899999999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.4e-07 Score=105.84 Aligned_cols=242 Identities=17% Similarity=0.274 Sum_probs=156.3
Q ss_pred CCCeEEEEEccCCCEEEEEeC---C---CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEec---CCeEEEEE
Q psy4876 335 NENVCSVAWIQEGYMLGVGTS---L---GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSR---CGNIVHHD 403 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~---d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~---dg~I~iwd 403 (609)
++.-..++|-.||.|+|+.+. . ..|+||+-+ |.+..+-..-.+--.+++| +|+++++... .-.|.+|.
T Consensus 209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE 287 (928)
T PF04762_consen 209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE 287 (928)
T ss_pred CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe
Confidence 446678999999999999875 3 479999966 6655555544455567899 6888888765 34566776
Q ss_pred cCCCCeeEEEEc--cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-CcccEEEEEEcCCCCc
Q psy4876 404 VRSRDHKVALLQ--NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-HQAAVKAIAWCPWSPN 480 (609)
Q Consensus 404 ~~~~~~~~~~~~--~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~ 480 (609)
-..-.+--..+. .....|..|.|++|+..||....|. |.+|-..+-. + -..+.+.- ....+..+.|+|....
T Consensus 288 rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH--W--YLKqei~~~~~~~~~~~~Wdpe~p~ 362 (928)
T PF04762_consen 288 RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH--W--YLKQEIRFSSSESVNFVKWDPEKPL 362 (928)
T ss_pred cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE--E--EEEEEEEccCCCCCCceEECCCCCC
Confidence 543322223333 3556899999999999999988665 9999876542 1 12222221 2233455999998777
Q ss_pred EEEEEeccCCCeEEEEE----CCCCc--------e------------------------eEEEcCCCCeEEEEEcCCCCe
Q psy4876 481 VLASGGGTADRHIYFWN----VSSGA--------C------------------------LDSIDTKSQVCALLWNSDYKE 524 (609)
Q Consensus 481 llasggGs~Dg~I~iwd----~~t~~--------~------------------------~~~~~~~~~v~sl~~s~~g~~ 524 (609)
.|.... .++.+..++ +..+. . ...+...+.|..++|++++..
T Consensus 363 ~L~v~t--~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~ 440 (928)
T PF04762_consen 363 RLHVLT--SNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSR 440 (928)
T ss_pred EEEEEe--cCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCe
Confidence 665542 345554433 22110 1 123335568999999999987
Q ss_pred EEEEEecCCCeEEEEECCCCce--------EEEEe----------CCCCCEEEEEEeCCCCEEEEEECC---CCEEEEEc
Q psy4876 525 LVSAHGFAQNQLIIWKYPSLVK--------VAELH----------GHSARVLNLAMSPDETTVLSAGAD---ETLRLWKI 583 (609)
Q Consensus 525 l~~~sG~~dg~I~Iwd~~~~~~--------~~~l~----------~h~~~V~~l~~spdg~~L~s~s~D---g~I~iWdl 583 (609)
+++.. .||.|.+|....... ...+. .-...+..++|..+..+++....+ ..+.++++
T Consensus 441 ~avl~--~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 518 (928)
T PF04762_consen 441 FAVLT--SDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDI 518 (928)
T ss_pred EEEEE--CCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEe
Confidence 77765 799999998543211 11111 123457889998888777766664 67888888
Q ss_pred CCC
Q psy4876 584 FEK 586 (609)
Q Consensus 584 ~~~ 586 (609)
...
T Consensus 519 ~~~ 521 (928)
T PF04762_consen 519 DDS 521 (928)
T ss_pred ccC
Confidence 544
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=108.99 Aligned_cols=229 Identities=14% Similarity=0.272 Sum_probs=161.7
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe---------------eEEEecCCCCceEEEEec--CCEEEEEecC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK---------------KCRTMDGHDVRVGALAWN--TYILSSGSRC 396 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~---------------~~~~l~~h~~~V~~l~~~--~~~L~sgs~d 396 (609)
......|++|+.+..++|+|+.||.++|..+.+.. .-+++.||...|..+.|| ...|.+...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 55678899999999999999999999999876431 124678999999999995 5788899999
Q ss_pred CeEEEEEcCCCCeeEEE-EccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEc
Q psy4876 397 GNIVHHDVRSRDHKVAL-LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWC 475 (609)
Q Consensus 397 g~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 475 (609)
|.|.+|-+-.+.-.... -...++.|.+++|..||..++..-.||.|.+=.++... .+. ..+.+ .....+.|+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-Iwg----KeLkg--~~l~hv~ws 165 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWG----KELKG--QLLAHVLWS 165 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecc----hhcch--heccceeec
Confidence 99999998776422111 22345779999999999999999999998776665431 111 11111 123478899
Q ss_pred CCCCcEEEEEeccCCCeEEEEECCCC-------ceeEEEc-----CCCCeEEEEEc--------CCCCeEEEEEecCCCe
Q psy4876 476 PWSPNVLASGGGTADRHIYFWNVSSG-------ACLDSID-----TKSQVCALLWN--------SDYKELVSAHGFAQNQ 535 (609)
Q Consensus 476 p~~~~llasggGs~Dg~I~iwd~~t~-------~~~~~~~-----~~~~v~sl~~s--------~~g~~l~~~sG~~dg~ 535 (609)
+|...+|+. ...|.+.+||.... .|..... ....+..+.|. |+...++++ +.+|.
T Consensus 166 ~D~~~~Lf~---~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavc--y~nGr 240 (1189)
T KOG2041|consen 166 EDLEQALFK---KANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVC--YANGR 240 (1189)
T ss_pred ccHHHHHhh---hcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEE--EcCce
Confidence 998766653 47899999997632 1211111 12246677774 466777774 47888
Q ss_pred EEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECC
Q psy4876 536 LIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGAD 575 (609)
Q Consensus 536 I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D 575 (609)
+.|..-.+......+. ..-.|.++.|+++|..|+.+|.|
T Consensus 241 ~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 241 MQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred ehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCc
Confidence 8887654433222222 22568899999999999999875
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-07 Score=96.71 Aligned_cols=257 Identities=13% Similarity=0.152 Sum_probs=168.0
Q ss_pred EEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceee--eeeecCCCCeEEEEEccCC--C
Q psy4876 274 LIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDH--LMDLEGNENVCSVAWIQEG--Y 348 (609)
Q Consensus 274 ~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~h~~~V~~v~~spdg--~ 348 (609)
.+.|+-+. ++|--.+..++|+++ + ..+.. ...+ ....|...+|+|.| .
T Consensus 136 ~~k~s~~D~y~ARvv~~sl~i~e~-t-------------------------~n~~~~p~~~l-r~~gi~dFsisP~~n~~ 188 (561)
T COG5354 136 VLKFSIDDKYVARVVGSSLYIHEI-T-------------------------DNIEEHPFKNL-RPVGILDFSISPEGNHD 188 (561)
T ss_pred eeeeeecchhhhhhccCeEEEEec-C-------------------------CccccCchhhc-cccceeeEEecCCCCCc
Confidence 47788764 555336778999997 4 22221 1111 24678899999975 3
Q ss_pred EEEE-----EeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEe-----------cCCeEEEEEcCCCCee
Q psy4876 349 MLGV-----GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGS-----------RCGNIVHHDVRSRDHK 410 (609)
Q Consensus 349 ~Las-----gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs-----------~dg~I~iwd~~~~~~~ 410 (609)
-||. +...+.++||.+..+..+.+-.-....-..+.|+ |++|++-- ....+++++++...
T Consensus 189 ~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-- 266 (561)
T COG5354 189 ELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-- 266 (561)
T ss_pred eEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc--
Confidence 4554 4567899999998776665544333334456673 54443321 12568888888653
Q ss_pred EEEEccCCCCeEEEEEccCCCEEEEEe--CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEecc
Q psy4876 411 VALLQNHTQEVCGLKWSPDGRYLASGG--NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGT 488 (609)
Q Consensus 411 ~~~~~~h~~~V~~l~~spdg~~lasgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs 488 (609)
+.......++|...+|.|.++.|++.+ .+-.+.++|++.. ..+ ......-..+.|+|.+.++|+.|-|.
T Consensus 267 i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-------l~~--~~Pe~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 267 IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-------LRF--YFPEQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred cceeccccccceeeeecccCCceeEEecccccceeecccccc-------eEE--ecCCcccccccccCcccEEEEecCCc
Confidence 333336688999999999888776655 6788999999853 222 23445556788999998888888767
Q ss_pred CCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEec----CCCeEEEEECCCCceEEEEeCCCCCEEEEEEeC
Q psy4876 489 ADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGF----AQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP 564 (609)
Q Consensus 489 ~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~----~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp 564 (609)
..|.|-+||....-.+..--......-+.|+|++.++.+...+ .|+.|.|||+...... ..+.+.|.|
T Consensus 338 l~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p 409 (561)
T COG5354 338 LQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDP 409 (561)
T ss_pred cccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccC
Confidence 7899999998765444422233345667899999999876432 4789999998543221 345566666
Q ss_pred CCCEEEEEECCC
Q psy4876 565 DETTVLSAGADE 576 (609)
Q Consensus 565 dg~~L~s~s~Dg 576 (609)
.|++.-+.+.+.
T Consensus 410 ~~~~~ttsSs~~ 421 (561)
T COG5354 410 SGQYVTTSSSCP 421 (561)
T ss_pred CcccceeeccCC
Confidence 666555554443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=99.28 Aligned_cols=240 Identities=16% Similarity=0.293 Sum_probs=167.6
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe-----eEEEecCCC------------CceEEEEe-c---CCEEEE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK-----KCRTMDGHD------------VRVGALAW-N---TYILSS 392 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~-----~~~~l~~h~------------~~V~~l~~-~---~~~L~s 392 (609)
..+.|++|.|...|.||++|...|.|.+|.-.... ....+++|. ..|..+.| + ...++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 56789999999999999999999999999765432 233456664 45778888 2 256667
Q ss_pred EecCCeEEEEEcCCCC------------------------------------ee-----EEEE-ccCCCCeEEEEEccCC
Q psy4876 393 GSRCGNIVHHDVRSRD------------------------------------HK-----VALL-QNHTQEVCGLKWSPDG 430 (609)
Q Consensus 393 gs~dg~I~iwd~~~~~------------------------------------~~-----~~~~-~~h~~~V~~l~~spdg 430 (609)
.+.|.+|++|.+.... .. .+.+ ..|.-.|.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7789999999886431 00 0111 3567778899999998
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC-----cccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce-e
Q psy4876 431 RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH-----QAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC-L 504 (609)
Q Consensus 431 ~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-----~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~-~ 504 (609)
+.++++. |-.|.+|++.-....+ .+..+..| ..-|++..|+|....++.-. +..|.|++-|++.... .
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sF---nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS--sSkG~Ikl~DlRq~alcd 258 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSF---NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS--SSKGEIKLNDLRQSALCD 258 (460)
T ss_pred heeeecc-ceeeeeccccccCCce---EEEeccCccHHHHHHHHhhcccCHhHcceEEEe--cCCCcEEehhhhhhhhcc
Confidence 8888764 6889999987653221 22223333 34578889999877777665 4799999999984321 1
Q ss_pred E-------EEc---------CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC-ceEEEEeCCC------------C
Q psy4876 505 D-------SID---------TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL-VKVAELHGHS------------A 555 (609)
Q Consensus 505 ~-------~~~---------~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~-~~~~~l~~h~------------~ 555 (609)
. .++ .-+.|..+.|+++|+++++- +-.+|+|||.... .++.++.-|. +
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR---dyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnD 335 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR---DYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEND 335 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe---ccceEEEEecccccCCceeechHHHHHHHHHhhhhcc
Confidence 1 111 11368889999999999973 4789999998753 4566664442 2
Q ss_pred CE---EEEEEeCCCCEEEEEECCCCEEEEE
Q psy4876 556 RV---LNLAMSPDETTVLSAGADETLRLWK 582 (609)
Q Consensus 556 ~V---~~l~~spdg~~L~s~s~Dg~I~iWd 582 (609)
.| ..+.|+.|.+.+.+|+..+..-|+-
T Consensus 336 aifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred ceeeeEEEEecCCcccccccccccceeeec
Confidence 22 3577888888898888877766665
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-06 Score=84.04 Aligned_cols=236 Identities=16% Similarity=0.182 Sum_probs=141.2
Q ss_pred EEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec--CCCCeEEEEEccCCCEEE
Q psy4876 275 IDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE--GNENVCSVAWIQEGYMLG 351 (609)
Q Consensus 275 l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--h~~~V~~v~~spdg~~La 351 (609)
++-+.+| +||+-.|..|.|-...+.- ..+...+.+. ..-.=.-++||||+.+||
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf-----------------------~si~~kcqVpkD~~PQWRkl~WSpD~tlLa 59 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDF-----------------------SSIIGKCQVPKDPNPQWRKLAWSPDCTLLA 59 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCc-----------------------hheeEEEecCCCCCchheEEEECCCCcEEE
Confidence 3445665 9999999999998877621 2222222333 334456799999999999
Q ss_pred EEeCCCeEEEEeCCCCeeEEEecC-------CCCceEEEEe-c-------CCEEEEEecCCeEEEEEcCCC----CeeEE
Q psy4876 352 VGTSLGTVQLWDVSAKKKCRTMDG-------HDVRVGALAW-N-------TYILSSGSRCGNIVHHDVRSR----DHKVA 412 (609)
Q Consensus 352 sgs~dg~I~iwd~~~~~~~~~l~~-------h~~~V~~l~~-~-------~~~L~sgs~dg~I~iwd~~~~----~~~~~ 412 (609)
.+...|+|++||+.. ..+..+.. -...|..+.| . ...|++-..+|.++-|-+..+ -....
T Consensus 60 ~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~h 138 (282)
T PF15492_consen 60 YAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENH 138 (282)
T ss_pred EEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeE
Confidence 999999999999975 33434332 2356677777 1 235667777888877765321 12222
Q ss_pred EEc---cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC
Q psy4876 413 LLQ---NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA 489 (609)
Q Consensus 413 ~~~---~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~ 489 (609)
.+. .+...|.++.++|..++|++||.... +.+. -......+++-..-.+.++..-+.. ..
T Consensus 139 sfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----------s~a~~~GLtaWRiL~~~Pyyk~v~~-~~ 201 (282)
T PF15492_consen 139 SFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----------SKASSCGLTAWRILSDSPYYKQVTS-SE 201 (282)
T ss_pred EEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----------ccccccCceEEEEcCCCCcEEEccc-cC
Confidence 222 34678999999999888888775322 0000 0011111222222112222211110 01
Q ss_pred C------CeEEEEECCCCceeEE-EcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC
Q psy4876 490 D------RHIYFWNVSSGACLDS-IDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH 553 (609)
Q Consensus 490 D------g~I~iwd~~t~~~~~~-~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h 553 (609)
| .+..+|.+-+...... -.....|..|..||||..|++++ .+|.|.+|++++......+.-+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih--~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 202 DDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIH--FSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEE--cCCeEEEEecCcchhhcccchh
Confidence 1 1223444332222111 12346899999999999999988 7999999999998887766544
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=2e-09 Score=111.28 Aligned_cols=207 Identities=15% Similarity=0.259 Sum_probs=153.1
Q ss_pred eEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCC------eeEEEEccCCCCeEEEEEccCCCEEEEEeCCC
Q psy4876 369 KCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRD------HKVALLQNHTQEVCGLKWSPDGRYLASGGNDN 440 (609)
Q Consensus 369 ~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg 440 (609)
.+..+.+|...|..++- |.+-+++++.|.+|++|.++... .+..+++.|+.+|..+.|..+-++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 35567889999988876 67889999999999999987432 3567788999999999999998888865 78
Q ss_pred cEEEEeCCCCCCCCCccceEeecC--CcccEEEEEEcCC-CCcEEEEEeccCCCeEEEEECCCCceeEEEcC------CC
Q psy4876 441 LLNIWSGVPGQHTFSTQPIHSLSR--HQAAVKAIAWCPW-SPNVLASGGGTADRHIYFWNVSSGACLDSIDT------KS 511 (609)
Q Consensus 441 ~I~iwd~~~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~-~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~------~~ 511 (609)
.|++||.--+ .++..+.. ..+.+..+..-+. ...++..|. +...+|+++|.+.++-...+.. ..
T Consensus 805 giHlWDPFig------r~Laq~~dapk~~a~~~ikcl~nv~~~iliAgc-saeSTVKl~DaRsce~~~E~kVcna~~Pna 877 (1034)
T KOG4190|consen 805 GIHLWDPFIG------RLLAQMEDAPKEGAGGNIKCLENVDRHILIAGC-SAESTVKLFDARSCEWTCELKVCNAPGPNA 877 (1034)
T ss_pred cceeeccccc------chhHhhhcCcccCCCceeEecccCcchheeeec-cchhhheeeecccccceeeEEeccCCCCch
Confidence 9999998766 34332211 1222333333333 334555543 6899999999998887666642 24
Q ss_pred CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEE-EEcCCCc
Q psy4876 512 QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRL-WKIFEKV 587 (609)
Q Consensus 512 ~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~i-Wdl~~~~ 587 (609)
-+.+++..+.|+++++ +-..|.|.+.|.++|..+..++..+.....++ .|..+.|+....|.++.+ |.-..+-
T Consensus 878 ~~R~iaVa~~GN~lAa--~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 878 LTRAIAVADKGNKLAA--ALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred heeEEEeccCcchhhH--HhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence 6889999999999998 55899999999999999888776555555555 356667777778888888 7655544
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-08 Score=101.34 Aligned_cols=161 Identities=19% Similarity=0.251 Sum_probs=111.2
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe----eEEEecCCCCceEEEEe---cCCEEE--EEecCCeEEEEEcCCC
Q psy4876 337 NVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK----KCRTMDGHDVRVGALAW---NTYILS--SGSRCGNIVHHDVRSR 407 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~----~~~~l~~h~~~V~~l~~---~~~~L~--sgs~dg~I~iwd~~~~ 407 (609)
.+..+..++.+++||++..+....+++..... ++.... -..+-.++.| +...++ ..+....+.+|....
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~- 141 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS- 141 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc-
Confidence 34556678889999999988887777765433 222221 2222233333 333222 223344455555544
Q ss_pred CeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 408 DHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 408 ~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~llasgg 486 (609)
.....+-+|-+.+..++|+||+++|+++..|..|+|-..... ..+..+ .+|...|..++.-++. +|++||
T Consensus 142 -~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~------f~IesfclGH~eFVS~isl~~~~--~LlS~s 212 (390)
T KOG3914|consen 142 -GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT------FVIESFCLGHKEFVSTISLTDNY--LLLSGS 212 (390)
T ss_pred -cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc------cchhhhccccHhheeeeeeccCc--eeeecC
Confidence 245566789999999999999999999999999999877654 233333 4799999999998754 566665
Q ss_pred ccCCCeEEEEECCCCceeEEEcCC
Q psy4876 487 GTADRHIYFWNVSSGACLDSIDTK 510 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t~~~~~~~~~~ 510 (609)
.|++|++||+.+|+++.+++..
T Consensus 213 --GD~tlr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 213 --GDKTLRLWDITSGKLLDTCDLS 234 (390)
T ss_pred --CCCcEEEEecccCCcccccchh
Confidence 4999999999999999877643
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.3e-09 Score=119.91 Aligned_cols=196 Identities=13% Similarity=0.255 Sum_probs=151.2
Q ss_pred CCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q psy4876 376 HDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHT 453 (609)
Q Consensus 376 h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~ 453 (609)
+-..|.++.-+ .-+.++|+.||.|++|....++..+..-......|+.+.|+.+|+.+..+..||.+.+|.+..
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p---- 2282 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP---- 2282 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC----
Confidence 33444444443 246779999999999999887644444444458899999999999999999999999999873
Q ss_pred CCccceEeecCCcccEEEEEEcCCCCcEEEEEe-ccCCCeEEEEECCCC---ceeEEEcCCCCeEEEEEcCCCCeEEEEE
Q psy4876 454 FSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG-GTADRHIYFWNVSSG---ACLDSIDTKSQVCALLWNSDYKELVSAH 529 (609)
Q Consensus 454 ~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg-Gs~Dg~I~iwd~~t~---~~~~~~~~~~~v~sl~~s~~g~~l~~~s 529 (609)
++....+.|.....++.|-. .++++.| .+.++.+.+||..-. .++. .-+.+.++++++-|....+++
T Consensus 2283 ---k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllis-- 2353 (2439)
T KOG1064|consen 2283 ---KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLIS-- 2353 (2439)
T ss_pred ---cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEe--
Confidence 67888888999999998876 3555543 456789999998632 2344 345678999999999999999
Q ss_pred ecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 530 GFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 530 G~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
|+.+|.|++||++..+.+..++. ++ ...++++|+..|.|+||++.+....+....
T Consensus 2354 ggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred cCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 66999999999987776655543 44 567999999999999999998766554433
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-06 Score=92.97 Aligned_cols=216 Identities=8% Similarity=-0.017 Sum_probs=134.1
Q ss_pred CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCC-EEEEEec---CCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCC
Q psy4876 357 GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTY-ILSSGSR---CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDG 430 (609)
Q Consensus 357 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~-~L~sgs~---dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 430 (609)
..|.+-|.+... .+.+.... .+....| +++ .++..+. +..|+++|+.++. ...+....+.+....|+|||
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~--~~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK--KEKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc--EEEEecCCCcEEeeEECCCC
Confidence 355565654333 33333333 6677888 465 3554333 3569999998764 23333355556678899999
Q ss_pred CEEEEEe-C--CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEE
Q psy4876 431 RYLASGG-N--DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI 507 (609)
Q Consensus 431 ~~lasgs-~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~ 507 (609)
+.++... . +..|+++|+..+ . ...+..+........|+|||..++.+........|+++|+.+++.....
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g------~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTK------T-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCC------c-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc
Confidence 8776543 2 356888898766 2 3344444433445689999988888763212237889999887764433
Q ss_pred cCCCCeEEEEEcCCCCeEEEEEecCC-------CeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECC-C--C
Q psy4876 508 DTKSQVCALLWNSDYKELVSAHGFAQ-------NQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGAD-E--T 577 (609)
Q Consensus 508 ~~~~~v~sl~~s~~g~~l~~~sG~~d-------g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D-g--~ 577 (609)
..... ...|+|+|+.++..+...+ ..|.+.|+.++.. ..+... .......|+|||+.|+..+.+ + .
T Consensus 318 ~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~ 393 (419)
T PRK04043 318 FHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSA 393 (419)
T ss_pred cCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEE
Confidence 22222 3589999999988764321 4788889887754 334332 233468899999988766543 3 3
Q ss_pred EEEEEcCCCc
Q psy4876 578 LRLWKIFEKV 587 (609)
Q Consensus 578 I~iWdl~~~~ 587 (609)
|.+.++....
T Consensus 394 L~~~~l~g~~ 403 (419)
T PRK04043 394 LGIIRLNYNK 403 (419)
T ss_pred EEEEecCCCe
Confidence 5566665543
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-07 Score=101.02 Aligned_cols=242 Identities=14% Similarity=0.251 Sum_probs=177.9
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecC--------------CEEEEEecCCeEE
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT--------------YILSSGSRCGNIV 400 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~--------------~~L~sgs~dg~I~ 400 (609)
...-.++.|+|.| +||.|+. ..|.|-|..+-+.++.+..|...|+.+.|.+ -+|+++...|.|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3446688999987 6777776 5799999999999999999999999999921 2677888899999
Q ss_pred EEEcCCCCeeEEEEccCCCCeEEEEEcc---CC-CEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcC
Q psy4876 401 HHDVRSRDHKVALLQNHTQEVCGLKWSP---DG-RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476 (609)
Q Consensus 401 iwd~~~~~~~~~~~~~h~~~V~~l~~sp---dg-~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 476 (609)
+||+..+. .+..+..|..++..++|-+ +. ..|+.-.....|.+|+..+| +.+.+.........|+.+.|
T Consensus 93 l~d~~~~s-~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG------~k~Wk~~ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 93 LVDFVLAS-VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG------EKFWKYDYSHEILSCFRVDP 165 (1062)
T ss_pred EEEehhhh-hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC------ceeeccccCCcceeeeeeCC
Confidence 99999873 5667778889999999977 33 45666677789999999999 66666666666778899999
Q ss_pred CCCcEEEEEeccCCCeEEEEECCC-------CceeEEEcCCC--------------------------CeEEEEEcCCCC
Q psy4876 477 WSPNVLASGGGTADRHIYFWNVSS-------GACLDSIDTKS--------------------------QVCALLWNSDYK 523 (609)
Q Consensus 477 ~~~~llasggGs~Dg~I~iwd~~t-------~~~~~~~~~~~--------------------------~v~sl~~s~~g~ 523 (609)
....-+..-| ..|.+.+-+.-. |+..+.-..++ -...++|+|..+
T Consensus 166 fd~rh~~~l~--s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~r 243 (1062)
T KOG1912|consen 166 FDSRHFCVLG--SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWR 243 (1062)
T ss_pred CCcceEEEEc--cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhh
Confidence 7655444332 466666655421 11111111100 022467788887
Q ss_pred eEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCC--CEEEEEECCCCEEEEEcCCCccc
Q psy4876 524 ELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDE--TTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 524 ~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg--~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
.++... -...+.|+|++-..++....-..+.+.-+.|-|++ ..|++.-.||.+.||.-.....+
T Consensus 244 n~lfi~--~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~ 309 (1062)
T KOG1912|consen 244 NILFIT--FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTE 309 (1062)
T ss_pred ceEEEE--eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcc
Confidence 776654 57889999999888888877666777777887765 48999999999999987664433
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.8e-07 Score=95.11 Aligned_cols=179 Identities=12% Similarity=0.041 Sum_probs=116.6
Q ss_pred CeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCE-EEEEeCC---CcEEEEeCCCCCCCCCccceEeecCCcccEEEE
Q psy4876 397 GNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRY-LASGGND---NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI 472 (609)
Q Consensus 397 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~-lasgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l 472 (609)
..|.+-|.+... .+.+.... .+....|+|||+. ++..+.+ ..|+++|+.+++ . ..+....+.+...
T Consensus 169 ~~l~~~d~dg~~--~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~------~-~~lt~~~g~~~~~ 238 (419)
T PRK04043 169 SNIVLADYTLTY--QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK------K-EKIASSQGMLVVS 238 (419)
T ss_pred ceEEEECCCCCc--eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc------E-EEEecCCCcEEee
Confidence 356666665543 23233233 7788999999985 6654443 469999998772 2 2333345556678
Q ss_pred EEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCC-CeEEEEECCCCceEEEEe
Q psy4876 473 AWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQ-NQLIIWKYPSLVKVAELH 551 (609)
Q Consensus 473 ~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~d-g~I~Iwd~~~~~~~~~l~ 551 (609)
.|+|||..++++.....+..|+++|+.+++...............|+|||+.|+..+...+ ..|+++|+.+++......
T Consensus 239 ~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 239 DVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred EECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence 8999998887765423356899999988875443333333456789999999988763222 268888988776533322
Q ss_pred CCCCCEEEEEEeCCCCEEEEEECC---------CCEEEEEcCCCcc
Q psy4876 552 GHSARVLNLAMSPDETTVLSAGAD---------ETLRLWKIFEKVK 588 (609)
Q Consensus 552 ~h~~~V~~l~~spdg~~L~s~s~D---------g~I~iWdl~~~~~ 588 (609)
. .. ....|+|||+.|+..+.. ..|.+.|+.++..
T Consensus 319 ~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 319 H-GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred C-CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 1 11 124899999988876654 2577778877653
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.89 E-value=6e-06 Score=82.36 Aligned_cols=217 Identities=15% Similarity=0.168 Sum_probs=144.0
Q ss_pred EEEEcc-CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCee-EEEEc
Q psy4876 340 SVAWIQ-EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHK-VALLQ 415 (609)
Q Consensus 340 ~v~~sp-dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~-~~~~~ 415 (609)
++.|.+ ++.++++-...+.|..|+..++.... +.... ...+.++ +..|+.+...+ +.++|..++... +....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 678998 67777777778999999998876543 22222 4455553 56666666654 455598876321 11221
Q ss_pred --c-CCCCeEEEEEccCCCEEEEEeCC--------CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 416 --N-HTQEVCGLKWSPDGRYLASGGND--------NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 416 --~-h~~~V~~l~~spdg~~lasgs~D--------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
. .....+.+++.++|++.++.... |.|+.++.. + + +..+...-.....|+|+|+++.|+++
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~------~-~~~~~~~~~~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G------K-VTVVADGLGFPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S------E-EEEEEEEESSEEEEEEETTSSEEEEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C------e-EEEEecCcccccceEECCcchheeec
Confidence 1 34568899999999977776543 558888877 4 2 22223334567899999999877776
Q ss_pred EeccCCCeEEEEECCCCce-e---EEE---cCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCC
Q psy4876 485 GGGTADRHIYFWNVSSGAC-L---DSI---DTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSAR 556 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t~~~-~---~~~---~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~ 556 (609)
- +..+.|..|++..... + ..+ ... .....+++..+|+..++. ...+.|.+++.. ++.+..+......
T Consensus 152 d--s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~--~~~~~I~~~~p~-G~~~~~i~~p~~~ 226 (246)
T PF08450_consen 152 D--SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD--WGGGRIVVFDPD-GKLLREIELPVPR 226 (246)
T ss_dssp E--TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE--ETTTEEEEEETT-SCEEEEEE-SSSS
T ss_pred c--cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE--cCCCEEEEECCC-ccEEEEEcCCCCC
Confidence 5 4788999999863221 1 122 222 247899999999877764 478999999976 8888888766668
Q ss_pred EEEEEEe-CCCCEEEEEE
Q psy4876 557 VLNLAMS-PDETTVLSAG 573 (609)
Q Consensus 557 V~~l~~s-pdg~~L~s~s 573 (609)
+++++|. ++...|+..+
T Consensus 227 ~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 227 PTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEEESTTSSEEEEEE
T ss_pred EEEEEEECCCCCEEEEEe
Confidence 9999994 6766665543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-06 Score=85.42 Aligned_cols=224 Identities=12% Similarity=0.208 Sum_probs=153.2
Q ss_pred CeEEEEeCCCCe-e--EEEecCCCCceEEEEec--CCEEEEEec---CCeEEEEEcCCCCeeEEEE---ccCCCCeEEEE
Q psy4876 357 GTVQLWDVSAKK-K--CRTMDGHDVRVGALAWN--TYILSSGSR---CGNIVHHDVRSRDHKVALL---QNHTQEVCGLK 425 (609)
Q Consensus 357 g~I~iwd~~~~~-~--~~~l~~h~~~V~~l~~~--~~~L~sgs~---dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l~ 425 (609)
.-|.+|++.+.. . ...+-.+....+-|+|+ .+.|.++-. +|.|..|.++.....+..+ ......-+.++
T Consensus 16 ~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvs 95 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVS 95 (346)
T ss_pred CceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEE
Confidence 569999987432 1 12223466777888885 556877755 4678888777532122222 22334458899
Q ss_pred EccCCCEEEEEeC-CCcEEEEeCCCCCCCCCccceEeecCCccc----------EEEEEEcCCCCcEEEEEeccCCCeEE
Q psy4876 426 WSPDGRYLASGGN-DNLLNIWSGVPGQHTFSTQPIHSLSRHQAA----------VKAIAWCPWSPNVLASGGGTADRHIY 494 (609)
Q Consensus 426 ~spdg~~lasgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~----------V~~l~~sp~~~~llasggGs~Dg~I~ 494 (609)
++++|++++++.. -|.|.++-++..... .....+..|.+. +....+.|+++.++++.- .-.+|.
T Consensus 96 vd~~g~~vf~AnY~~g~v~v~p~~~dG~l---~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL--G~Dri~ 170 (346)
T COG2706 96 VDEDGRFVFVANYHSGSVSVYPLQADGSL---QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL--GTDRIF 170 (346)
T ss_pred ECCCCCEEEEEEccCceEEEEEcccCCcc---ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec--CCceEE
Confidence 9999999988875 578999998763211 222223334444 788999999987777754 356799
Q ss_pred EEECCCCceeE----EEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC-ceEEEEeCC---------CCCEEEE
Q psy4876 495 FWNVSSGACLD----SIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL-VKVAELHGH---------SARVLNL 560 (609)
Q Consensus 495 iwd~~t~~~~~----~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~-~~~~~l~~h---------~~~V~~l 560 (609)
+|++..|.... .+..+...+.|.|+|++++.++.+ .-+++|.+|.+... ..+..++.+ ..+...|
T Consensus 171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~-EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVN-ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEe-ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence 99999776532 234566899999999999999885 47999999999763 344444322 2457788
Q ss_pred EEeCCCCEEEEEEC-CCCEEEEEcCCC
Q psy4876 561 AMSPDETTVLSAGA-DETLRLWKIFEK 586 (609)
Q Consensus 561 ~~spdg~~L~s~s~-Dg~I~iWdl~~~ 586 (609)
.+++||++|+++.. ...|.+|.+...
T Consensus 250 his~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 250 HISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 99999999987743 347888887764
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.9e-06 Score=99.80 Aligned_cols=202 Identities=10% Similarity=0.079 Sum_probs=130.5
Q ss_pred CeEEEEEccCCCEEEEEe-CCCeEEEEeCCCCeeEEEecCC-----------------CCceEEEEec---CCEEEEEec
Q psy4876 337 NVCSVAWIQEGYMLGVGT-SLGTVQLWDVSAKKKCRTMDGH-----------------DVRVGALAWN---TYILSSGSR 395 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs-~dg~I~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~~---~~~L~sgs~ 395 (609)
....|++.++++.|+++. .++.|+++|..++. +.++.+. -..-..++++ +.++++.+.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 467899999988766654 45689999987754 3333210 0123467774 456677778
Q ss_pred CCeEEEEEcCCCCeeEEEEccC---------------CCCeEEEEEccCCCEE-EEEeCCCcEEEEeCCCCCCCCC----
Q psy4876 396 CGNIVHHDVRSRDHKVALLQNH---------------TQEVCGLKWSPDGRYL-ASGGNDNLLNIWSGVPGQHTFS---- 455 (609)
Q Consensus 396 dg~I~iwd~~~~~~~~~~~~~h---------------~~~V~~l~~spdg~~l-asgs~Dg~I~iwd~~~~~~~~~---- 455 (609)
++.|++||..++. +..+.+. -....+|+|+|+|.+| ++-+.++.|++||+.++.....
T Consensus 704 ~~~I~v~d~~~g~--v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~ 781 (1057)
T PLN02919 704 QHQIWEYNISDGV--TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD 781 (1057)
T ss_pred CCeEEEEECCCCe--EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence 8899999987653 2222111 1245679999999854 4555678999999987531000
Q ss_pred ---ccceEeecCC--------cccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC--------------
Q psy4876 456 ---TQPIHSLSRH--------QAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK-------------- 510 (609)
Q Consensus 456 ---~~~~~~~~~h--------~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-------------- 510 (609)
......+..+ -.....++++++|. ++++. +.++.|++||..++.........
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVAD--s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l 858 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVAD--SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQL 858 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEE--CCCCEEEEEECCCCeEEEEeccCCcCCCCCccccccc
Confidence 0000011000 11235889999885 66665 47899999999887765433211
Q ss_pred CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce
Q psy4876 511 SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK 546 (609)
Q Consensus 511 ~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~ 546 (609)
.....++++++|+.+++ ...++.|++||+.+++.
T Consensus 859 ~~P~GIavd~dG~lyVa--Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 859 SEPAGLALGENGRLFVA--DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCceEEEEeCCCCEEEE--ECCCCEEEEEECCCCcc
Confidence 24678999999986665 45799999999988754
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-06 Score=84.10 Aligned_cols=225 Identities=12% Similarity=0.007 Sum_probs=148.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCe-eEEEecCCCCceEE---EEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCC--C
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKK-KCRTMDGHDVRVGA---LAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ--E 420 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~---l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~--~ 420 (609)
..+||.|+..|...+|...+.+ .......|...|.- .+-...-+..++.|.++++.++..+.... ..|.. .
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~---~~h~~~~~ 160 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF---AVHNQNLT 160 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc---eeeccccc
Confidence 4689999999999999998643 34444444443332 22234456667778888888776543111 12333 3
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceE-eecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC
Q psy4876 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIH-SLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS 499 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~ 499 (609)
+.++.+++|++++++.+....|..|.+..... ..+. ........-.+..|+... ..+|++ +.||.+.|||++
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se----y~~~~~~a~t~D~gF~~S~s~~~-~~FAv~--~Qdg~~~I~DVR 233 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE----YIENIYEAPTSDHGFYNSFSEND-LQFAVV--FQDGTCAIYDVR 233 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccc----eeeeeEecccCCCceeeeeccCc-ceEEEE--ecCCcEEEEEec
Confidence 88999999999999999999999999886532 1222 222233444678888765 567776 599999999999
Q ss_pred CCceeE-EE-----cCCCCeEEEEEcCCCCe--EEEEEecCCCeEEEEECCCCceEEEEe-------CCCC-CEEEEEEe
Q psy4876 500 SGACLD-SI-----DTKSQVCALLWNSDYKE--LVSAHGFAQNQLIIWKYPSLVKVAELH-------GHSA-RVLNLAMS 563 (609)
Q Consensus 500 t~~~~~-~~-----~~~~~v~sl~~s~~g~~--l~~~sG~~dg~I~Iwd~~~~~~~~~l~-------~h~~-~V~~l~~s 563 (609)
...... .. .+.+.+..+.|++.|.. |+. ...-+.+.+.|++++.....+. .|.. .|..-.|+
T Consensus 234 ~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~--sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~ 311 (344)
T KOG4532|consen 234 NMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI--SEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFN 311 (344)
T ss_pred ccccchhhhcccCCCCCCceEEEEecCCCcceEEEE--ecCcceEEEEEcccCceeeEEecCcccccccccccccccccc
Confidence 654332 22 24468999999986643 333 3357889999999887655442 2332 37788888
Q ss_pred CCCCEEEEEECCCCEEEEEcC
Q psy4876 564 PDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 564 pdg~~L~s~s~Dg~I~iWdl~ 584 (609)
.++..+.+.+++ .+.=|++.
T Consensus 312 ~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 312 NENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred CCCcccccccch-hhheeecc
Confidence 888777777665 34445553
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.2e-06 Score=82.27 Aligned_cols=227 Identities=10% Similarity=0.055 Sum_probs=145.7
Q ss_pred EEEEecCC------CeE-EEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEcc
Q psy4876 273 NLIDWSHF------NVL-AVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQ 345 (609)
Q Consensus 273 ~~l~wsp~------~ll-a~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~sp 345 (609)
..|+|-|. +.| ++|.-|...+|...+.+ ....++.. +...|+-+.=..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~------------------------~h~~~cd~-snn~v~~~~r~c 125 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTND------------------------GHLYQCDV-SNNDVTLVKRYC 125 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcc------------------------cceeeecc-cccchhhhhhhc
Confidence 55777663 344 46688999999998721 11222222 333222222111
Q ss_pred C-CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEE--EEccCCCC
Q psy4876 346 E-GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVA--LLQNHTQE 420 (609)
Q Consensus 346 d-g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~--~~~~h~~~ 420 (609)
+ ...+..++.|.++++.+++-+.....+....-.+.+++. ++.++++.++...|..|.++.....+. .....++.
T Consensus 126 d~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~ 205 (344)
T KOG4532|consen 126 DLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDH 205 (344)
T ss_pred ccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCC
Confidence 2 234566888888888888755433333222233666777 689999999999999999986543332 23344455
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCc--EEEEEeccCCCeEEEEEC
Q psy4876 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPN--VLASGGGTADRHIYFWNV 498 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~--llasggGs~Dg~I~iwd~ 498 (609)
-.+..|+.....+|++.+||++.|||++.......... .+-..|.+++..+.|++.|.. |+.+- .-+.+.+.|+
T Consensus 206 gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s-strp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~ 281 (344)
T KOG4532|consen 206 GFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS-STRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHVVDT 281 (344)
T ss_pred ceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc-ccCCCCCCceEEEEecCCCcceEEEEec---CcceEEEEEc
Confidence 66789999999999999999999999997643221111 122348999999999986643 34442 4688999999
Q ss_pred CCCceeEEEcC--------CC-CeEEEEEcCCCCeEEEE
Q psy4876 499 SSGACLDSIDT--------KS-QVCALLWNSDYKELVSA 528 (609)
Q Consensus 499 ~t~~~~~~~~~--------~~-~v~sl~~s~~g~~l~~~ 528 (609)
+++...+.+.. .. .+..-.|+.++..+.+.
T Consensus 282 R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 282 RNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred ccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence 99886655432 22 26667777777666653
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.1e-06 Score=86.06 Aligned_cols=145 Identities=10% Similarity=0.108 Sum_probs=112.0
Q ss_pred EecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeC
Q psy4876 276 DWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTS 355 (609)
Q Consensus 276 ~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~ 355 (609)
+..+.+++|.-+-|...|.+... + ....+.+.+.|.-..+.-+++-++.|..
T Consensus 328 a~~~Gd~ia~VSRGkaFi~~~~~-------------------------~---~~iqv~~~~~VrY~r~~~~~e~~vigt~ 379 (668)
T COG4946 328 AVVNGDYIALVSRGKAFIMRPWD-------------------------G---YSIQVGKKGGVRYRRIQVDPEGDVIGTN 379 (668)
T ss_pred ccCCCcEEEEEecCcEEEECCCC-------------------------C---eeEEcCCCCceEEEEEccCCcceEEecc
Confidence 33445577766677777776554 2 2334456777888888888889999999
Q ss_pred CC-eEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCE
Q psy4876 356 LG-TVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRY 432 (609)
Q Consensus 356 dg-~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (609)
|| .+-|+|..+++. ..+...-+.|.++.. +|..++.+.....|.+.|++++. ....-+...+-|+.++|||++++
T Consensus 380 dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn-v~~idkS~~~lItdf~~~~nsr~ 457 (668)
T COG4946 380 DGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN-VRLIDKSEYGLITDFDWHPNSRW 457 (668)
T ss_pred CCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC-eeEecccccceeEEEEEcCCcee
Confidence 99 899999987664 445556788888888 67889999999999999999984 33444456678999999999999
Q ss_pred EEEEeCCC----cEEEEeCCCC
Q psy4876 433 LASGGNDN----LLNIWSGVPG 450 (609)
Q Consensus 433 lasgs~Dg----~I~iwd~~~~ 450 (609)
||.+--+| .|+++|+..+
T Consensus 458 iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 458 IAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EEEecCcceeeeeEEEEecCCC
Confidence 99987665 5899998876
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-07 Score=94.86 Aligned_cols=168 Identities=17% Similarity=0.226 Sum_probs=121.6
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
+..+..++++++||++..+....+++...... ..+++...... ..-+++.|..+....+++-.......+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~--~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK--GAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC--cceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 34456778899999998888887888775421 11233322222 2234555555555555543222567777887777
Q ss_pred CceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEE-eCCCCCEEEEEEeCCCCEEEEEECCCCEE
Q psy4876 501 GACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL-HGHSARVLNLAMSPDETTVLSAGADETLR 579 (609)
Q Consensus 501 ~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~L~s~s~Dg~I~ 579 (609)
+.+...+-+-+.+..++|+||++.++++ ..|..|+|-.++....+..+ -||..-|..++.-++ ..|+++|.|++|+
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~Iita--DRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITA--DRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLR 218 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEe--cCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEE
Confidence 7777777777899999999999999995 48999999999877777666 479999999998755 4599999999999
Q ss_pred EEEcCCCccchhhhh
Q psy4876 580 LWKIFEKVKSKKKEI 594 (609)
Q Consensus 580 iWdl~~~~~~~k~~~ 594 (609)
+||+..+........
T Consensus 219 ~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 219 LWDITSGKLLDTCDL 233 (390)
T ss_pred EEecccCCcccccch
Confidence 999999987754443
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.3e-09 Score=112.94 Aligned_cols=217 Identities=12% Similarity=0.176 Sum_probs=155.2
Q ss_pred eeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCC--eEEE
Q psy4876 327 DHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCG--NIVH 401 (609)
Q Consensus 327 ~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg--~I~i 401 (609)
.....+. |+...+|++|+-+.++|++|+-.|.|++|++.+|.......+|...|+.+.. +|..+++.+... -..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 3344455 7889999999999999999999999999999999999999999999999988 676655554333 4678
Q ss_pred EEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-c---CCcccEEEEEEcCC
Q psy4876 402 HDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-S---RHQAAVKAIAWCPW 477 (609)
Q Consensus 402 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~---~h~~~V~~l~~sp~ 477 (609)
|+........+.+. +-.++.|+..-..-+.|+......|||+.++ .++.++ . +....-.+..|+|+
T Consensus 1172 W~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~------~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTC------SPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred hccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccC------cHHHHhcCcchhhhhhccccccCCC
Confidence 99876544444443 3457889876555566666677899999998 344432 1 12223367889998
Q ss_pred CCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCE
Q psy4876 478 SPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARV 557 (609)
Q Consensus 478 ~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V 557 (609)
.. |+. .|| .+||++..+.++.|+.-..-..=.|+|+|..++.-+ .|||+++.+.+.....-. -
T Consensus 1242 D~-LIl-----ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-------EIwD~RTF~lLh~VP~Ld--q 1304 (1516)
T KOG1832|consen 1242 DT-LIL-----NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-------EIWDMRTFKLLHSVPSLD--Q 1304 (1516)
T ss_pred cc-eEe-----eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec-------hhhhhHHHHHHhcCcccc--c
Confidence 74 554 355 579999888888776555444557999999998843 599999887766554321 2
Q ss_pred EEEEEeCCCCEEE
Q psy4876 558 LNLAMSPDETTVL 570 (609)
Q Consensus 558 ~~l~~spdg~~L~ 570 (609)
..+.|+..|..++
T Consensus 1305 c~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1305 CAVTFNSTGDVMY 1317 (1516)
T ss_pred eEEEeccCccchh
Confidence 4456666665444
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.3e-06 Score=80.18 Aligned_cols=214 Identities=14% Similarity=0.050 Sum_probs=134.2
Q ss_pred CCeEEEEeCCCCeeEEEecCC--CCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCE
Q psy4876 356 LGTVQLWDVSAKKKCRTMDGH--DVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRY 432 (609)
Q Consensus 356 dg~I~iwd~~~~~~~~~l~~h--~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (609)
+|.|..||..+|+.+...... .....+... ++..+++++.++.|..||..++. .+..... ...+.... ..++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~-~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGK-VLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSE-EEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCC-EEEEeec-ccccccee-eecccc
Confidence 689999999999988877531 122222233 67778888999999999998874 5555543 22222111 224556
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCccceEee-cCCc---ccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc
Q psy4876 433 LASGGNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQ---AAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID 508 (609)
Q Consensus 433 lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~---~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~ 508 (609)
+++++.|+.|+.+|..++ +.+... .... ...........+..+++.. .++.|..+|+.+|+.+....
T Consensus 79 v~v~~~~~~l~~~d~~tG------~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTG------KVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT---SSGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp EEEEETTSEEEEEETTTS------CEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE---TCSEEEEEETTTTEEEEEEE
T ss_pred cccccceeeeEecccCCc------ceeeeeccccccccccccccCceEecCEEEEEe---ccCcEEEEecCCCcEEEEee
Confidence 777778899999999998 444442 2110 1111222222244455443 58999999999999988776
Q ss_pred CCC-C----------eEEEEEcCCCCeEEEEEecCCCe-EEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCC
Q psy4876 509 TKS-Q----------VCALLWNSDYKELVSAHGFAQNQ-LIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADE 576 (609)
Q Consensus 509 ~~~-~----------v~sl~~s~~g~~l~~~sG~~dg~-I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg 576 (609)
... . +..-....++ .++++. .++. +.+ |..+++.+.... ...+.. ....++..|+.++.|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~--~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSS--GDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDG 222 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEEC--CTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTT
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEc--CCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCC
Confidence 532 1 1122222344 555533 4564 555 999999775333 222332 1456788888888999
Q ss_pred CEEEEEcCCCcc
Q psy4876 577 TLRLWKIFEKVK 588 (609)
Q Consensus 577 ~I~iWdl~~~~~ 588 (609)
.|..||+.+++.
T Consensus 223 ~l~~~d~~tG~~ 234 (238)
T PF13360_consen 223 RLYALDLKTGKV 234 (238)
T ss_dssp EEEEEETTTTEE
T ss_pred EEEEEECCCCCE
Confidence 999999998864
|
... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.2e-05 Score=77.51 Aligned_cols=189 Identities=15% Similarity=0.083 Sum_probs=121.8
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEE-EccCC---CC
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVAL-LQNHT---QE 420 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~-~~~h~---~~ 420 (609)
+++..+++++.++.|..||..+|+.+...............++..++.++.++.|..+|..++. .+.. ..... ..
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~-~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGK-VLWSIYLTSSPPAGV 112 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSC-EEEEEEE-SSCTCST
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcc-eeeeecccccccccc
Confidence 3567788888999999999999998887765222122234467777777788999999998885 4444 23221 11
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCccc----------EEEEEEcCCCCcEEEEEeccCC
Q psy4876 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAA----------VKAIAWCPWSPNVLASGGGTAD 490 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~----------V~~l~~sp~~~~llasggGs~D 490 (609)
........++..++++..++.|..+|+.+| +.+......... +..-....++ .++++. .+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~---~~ 182 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTG------KLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSS---GD 182 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTT------EEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEEC---CT
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCC------cEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEc---CC
Confidence 222233334788888888999999999999 555544432211 1222222234 555553 46
Q ss_pred Ce-EEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE
Q psy4876 491 RH-IYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE 549 (609)
Q Consensus 491 g~-I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~ 549 (609)
+. +.+ |+.+++.+.... ...+.. ....++..+++.+ .++.|..||..+++.+..
T Consensus 183 g~~~~~-d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~~~--~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 183 GRVVAV-DLATGEKLWSKP-ISGIYS-LPSVDGGTLYVTS--SDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp SSEEEE-ETTTTEEEEEEC-SS-ECE-CEECCCTEEEEEE--TTTEEEEEETTTTEEEEE
T ss_pred CeEEEE-ECCCCCEEEEec-CCCccC-CceeeCCEEEEEe--CCCEEEEEECCCCCEEeE
Confidence 64 555 999999765443 223322 2456777777754 799999999999987643
|
... |
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-06 Score=86.48 Aligned_cols=249 Identities=16% Similarity=0.238 Sum_probs=173.4
Q ss_pred eeeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCC-CCeeEEEec-CCCCceEEEEec--CCEEEEEecCCeEE
Q psy4876 326 IDHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVS-AKKKCRTMD-GHDVRVGALAWN--TYILSSGSRCGNIV 400 (609)
Q Consensus 326 ~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~-~~~~~~~l~-~h~~~V~~l~~~--~~~L~sgs~dg~I~ 400 (609)
...+..++ +.+.|++...-|...-+++.+.|.+++||--. .++.-..+. ....+++++.+. ...|++|-..|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 34455555 77888888888888889999999999999543 444433332 235678888884 57899999999998
Q ss_pred EEEcCCCC---eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCC
Q psy4876 401 HHDVRSRD---HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW 477 (609)
Q Consensus 401 iwd~~~~~---~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 477 (609)
-+.+...- ...+....|...|..+.|+-...++++.+.|..+.---.+.+.... -+.+.. .-.++.+.-.
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg----~Y~~~~---~~t~~~~d~~ 166 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLG----GYNFET---PASALQFDAL 166 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCccc----ceEeec---cCCCCceeeE
Confidence 88665321 2445566899999999999999999999999877654444442110 001110 0011111110
Q ss_pred CCcEEEEEeccCCCeEEEEECC--CCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-eEEEEeCC
Q psy4876 478 SPNVLASGGGTADRHIYFWNVS--SGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV-KVAELHGH 553 (609)
Q Consensus 478 ~~~llasggGs~Dg~I~iwd~~--t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~-~~~~l~~h 553 (609)
.... |...+.|....+. .-..+..+..+ ..+.++.|.+....+++ |..|..+.+||+.-.+ ...++.+|
T Consensus 167 ---~~fv--Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfS--g~~d~~vi~wdigg~~g~~~el~gh 239 (404)
T KOG1409|consen 167 ---YAFV--GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFS--GASDHSVIMWDIGGRKGTAYELQGH 239 (404)
T ss_pred ---EEEe--cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEe--ccccCceEEEeccCCcceeeeeccc
Confidence 1122 2355555554443 33455556555 58999999999999999 6689999999997654 34577899
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 554 SARVLNLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 554 ~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
...|..++.-+--+.|++++.||.|.+|+......
T Consensus 240 ~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 240 NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred hhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 99999999888888999999999999999876543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.6e-05 Score=76.69 Aligned_cols=218 Identities=17% Similarity=0.166 Sum_probs=139.8
Q ss_pred EEEecC-CC-eEEEE-cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEc-cCCCE
Q psy4876 274 LIDWSH-FN-VLAVA-LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWI-QEGYM 349 (609)
Q Consensus 274 ~l~wsp-~~-lla~s-~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~s-pdg~~ 349 (609)
++.|.+ ++ ++.+. ..+.|+.|+..+ +.... ..+ .. ...+++. +++ .
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~-------------------------~~~~~-~~~--~~-~~G~~~~~~~g-~ 53 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDT-------------------------GEVEV-IDL--PG-PNGMAFDRPDG-R 53 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTT-------------------------TEEEE-EES--SS-EEEEEEECTTS-E
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCC-------------------------CeEEE-Eec--CC-CceEEEEccCC-E
Confidence 467887 44 55555 478899999887 43322 222 22 7777887 564 5
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEecC-----CCCceEEEEe--cCCEEEEEecC--------CeEEEEEcCCCCeeEEEE
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCRTMDG-----HDVRVGALAW--NTYILSSGSRC--------GNIVHHDVRSRDHKVALL 414 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~~l~~-----h~~~V~~l~~--~~~~L~sgs~d--------g~I~iwd~~~~~~~~~~~ 414 (609)
|+++...+ +.++|..+++....... .......+++ +|++.++.... |.|..++.. + . +..+
T Consensus 54 l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-~-~~~~ 129 (246)
T PF08450_consen 54 LYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G-K-VTVV 129 (246)
T ss_dssp EEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S-E-EEEE
T ss_pred EEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C-e-EEEE
Confidence 55566644 66669988865443332 3456778888 46766665543 567777776 3 2 3333
Q ss_pred ccCCCCeEEEEEccCCCEEE-EEeCCCcEEEEeCCCCCC-CCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCe
Q psy4876 415 QNHTQEVCGLKWSPDGRYLA-SGGNDNLLNIWSGVPGQH-TFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH 492 (609)
Q Consensus 415 ~~h~~~V~~l~~spdg~~la-sgs~Dg~I~iwd~~~~~~-~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~ 492 (609)
...-...++|+|+|+++.|+ +-+..+.|..+++..... ....+....+....+..-.+++..+| +++++.. ..+.
T Consensus 130 ~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~--~~~~ 206 (246)
T PF08450_consen 130 ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADW--GGGR 206 (246)
T ss_dssp EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEE--TTTE
T ss_pred ecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEc--CCCE
Confidence 33345678999999999775 556678899999875421 11111222333333457889999988 4555542 5899
Q ss_pred EEEEECCCCceeEEEcCC-CCeEEEEEc-CCCCeEEEEE
Q psy4876 493 IYFWNVSSGACLDSIDTK-SQVCALLWN-SDYKELVSAH 529 (609)
Q Consensus 493 I~iwd~~t~~~~~~~~~~-~~v~sl~~s-~~g~~l~~~s 529 (609)
|.++|.. |+.+..+... ..+++++|. ++.+.|++.+
T Consensus 207 I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 207 IVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 9999987 9988888766 689999994 6777777654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.7e-06 Score=93.97 Aligned_cols=274 Identities=14% Similarity=0.223 Sum_probs=154.6
Q ss_pred eeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 270 YYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
..|.++.|-.+. ++.+..+|.|.+-|.++ ...+.+.. -+..|.+++|+||+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et-------------------------~~~eivg~--vd~GI~aaswS~De 121 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPET-------------------------LELEIVGN--VDNGISAASWSPDE 121 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccc-------------------------cceeeeee--ccCceEEEeecCCC
Confidence 346778887764 77788889999998887 55444433 46889999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEec-----CCCCceEEEEecC-CEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCe
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMD-----GHDVRVGALAWNT-YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEV 421 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~-----~h~~~V~~l~~~~-~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 421 (609)
..++..+..+++.+-+- +...+..-. ...+....+-|.. ..=+-|+ .|...-.+.............+.. =
T Consensus 122 e~l~liT~~~tll~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs-~gr~~~~~~~~~ek~~~~~~~~~~-~ 198 (1265)
T KOG1920|consen 122 ELLALITGRQTLLFMTK-DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGS-EGRQAARQKIEKEKALEQIEQDDH-K 198 (1265)
T ss_pred cEEEEEeCCcEEEEEec-cccchhccccccccccccccceecccccceeeecc-hhhhcccccccccccccchhhccC-C
Confidence 99999999887766432 222221111 1122333444521 1111221 122222111111111111112222 2
Q ss_pred EEEEEccCCCEEEEE-----eCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEE
Q psy4876 422 CGLKWSPDGRYLASG-----GNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496 (609)
Q Consensus 422 ~~l~~spdg~~lasg-----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iw 496 (609)
..|.|--||+++|+. .....|+|||-+ +.. -..-....+--.+++|-|.|..+.+...-+.|+.|.+|
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L------ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~Ivff 271 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL------NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFF 271 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh------hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEE
Confidence 468999999999983 223789999987 421 11111122233689999988655555544567789999
Q ss_pred ECCCCceeEEE----cCCC-CeEEEEEcCCCCeEEEEEecCCCe-EEEEECCCCc--eEEEEeCCCCCEEEEEEeCCC-C
Q psy4876 497 NVSSGACLDSI----DTKS-QVCALLWNSDYKELVSAHGFAQNQ-LIIWKYPSLV--KVAELHGHSARVLNLAMSPDE-T 567 (609)
Q Consensus 497 d~~t~~~~~~~----~~~~-~v~sl~~s~~g~~l~~~sG~~dg~-I~Iwd~~~~~--~~~~l~~h~~~V~~l~~spdg-~ 567 (609)
.-+ |-.-..+ .... .+..++|+.++..|++......+. |++|-..+.. ....+.-..... +.|+|-. .
T Consensus 272 ErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~ 348 (1265)
T KOG1920|consen 272 ERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEK 348 (1265)
T ss_pred ecC-CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCce
Confidence 743 3333322 2233 489999999999998854444555 9999886643 222333222222 6676632 2
Q ss_pred EEEEEECCCCEEEEEc
Q psy4876 568 TVLSAGADETLRLWKI 583 (609)
Q Consensus 568 ~L~s~s~Dg~I~iWdl 583 (609)
.|..-..+|...++++
T Consensus 349 ~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 349 TLHVLRESGQRLVRDF 364 (1265)
T ss_pred eEEEEecCCcEEEEEE
Confidence 3333335555555444
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-07 Score=100.10 Aligned_cols=242 Identities=13% Similarity=0.242 Sum_probs=162.2
Q ss_pred ceeEEEEEecCC----CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSHF----NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp~----~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~s 344 (609)
.|.|-.+.|++. ..+.......-.+|++.... .+...+.-..|...|+.+-|.
T Consensus 67 pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss-----------------------~~aIef~lhghsraitd~n~~ 123 (1081)
T KOG0309|consen 67 PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS-----------------------SNAIEFVLHGHSRAITDINFN 123 (1081)
T ss_pred cchhcceecccCCCCceeEEecCcchhhhhhhhcCC-----------------------ccceEEEEecCccceeccccC
Confidence 455677888875 24445555677789987621 222233333489999999999
Q ss_pred cCC-CEEEEEeCCCeEEEEeCCCCe-eEEEecCCCCceEEEEe---cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 345 QEG-YMLGVGTSLGTVQLWDVSAKK-KCRTMDGHDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 345 pdg-~~Lasgs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
+.. ..||+++.|-.|..||+.+.. .+..+..-......+.| +++.+++ +....|.+||++.+..++..+++|..
T Consensus 124 ~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs 202 (1081)
T KOG0309|consen 124 PQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVS 202 (1081)
T ss_pred CCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh-ccCCceEEEeccCCCcceEEecccce
Confidence 976 789999999999999998753 44444444556677888 4666654 45567999999999889999999999
Q ss_pred CeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEEC
Q psy4876 420 EVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 420 ~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~ 498 (609)
.|.+++|.. ....+.+++.|++|+.||...... ..-+.. ....+|..-.+-|.|...++--. -.+..+.+++.
T Consensus 203 ~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~----e~~~~v-tt~~piw~~r~~Pfg~g~~~mp~-~G~n~v~~~~c 276 (1081)
T KOG0309|consen 203 SVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT----ESKRTV-TTNFPIWRGRYLPFGEGYCIMPM-VGGNMVPQLRC 276 (1081)
T ss_pred eeehHHHhhhhhhhhcccCCCCceeeeccccccc----ccceec-cccCcceeccccccCceeEeccc-cCCeeeeeccc
Confidence 999999976 334688899999999999876532 222222 23456677777777654433211 01224444433
Q ss_pred CC----------CceeEEEcCCC-CeEEEEEcC--------CCC--eEEEEEecCCCeEEEEECC
Q psy4876 499 SS----------GACLDSIDTKS-QVCALLWNS--------DYK--ELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 499 ~t----------~~~~~~~~~~~-~v~sl~~s~--------~g~--~l~~~sG~~dg~I~Iwd~~ 542 (609)
++ .+.++.+.+|. .|....|-. +.+ .|++ -+.|..+++|-+.
T Consensus 277 ~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVT--WSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 277 ENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVT--WSKDQTLRLWPID 339 (1081)
T ss_pred cchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEE--eecCCceEeeecc
Confidence 32 34677777665 555555533 222 3444 5589999999774
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-05 Score=85.29 Aligned_cols=255 Identities=16% Similarity=0.048 Sum_probs=151.6
Q ss_pred CCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEE-EEEccCCCEEEEEeCCCe
Q psy4876 280 FNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCS-VAWIQEGYMLGVGTSLGT 358 (609)
Q Consensus 280 ~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~-v~~spdg~~Lasgs~dg~ 358 (609)
+.+++++.++.++.+|.++ ++..-...+ .+.+.+ ... .+..+++++.+|.
T Consensus 121 ~~v~v~~~~g~l~ald~~t-------------------------G~~~W~~~~--~~~~~ssP~v--~~~~v~v~~~~g~ 171 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAED-------------------------GEVAWQTKV--AGEALSRPVV--SDGLVLVHTSNGM 171 (394)
T ss_pred CEEEEEcCCCEEEEEECCC-------------------------CCCcccccC--CCceecCCEE--ECCEEEEECCCCE
Confidence 3467777889999999988 443222222 122221 111 2456777888999
Q ss_pred EEEEeCCCCeeEEEecCCCCce-----EEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCC----C---CeEEEEE
Q psy4876 359 VQLWDVSAKKKCRTMDGHDVRV-----GALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHT----Q---EVCGLKW 426 (609)
Q Consensus 359 I~iwd~~~~~~~~~l~~h~~~V-----~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~----~---~V~~l~~ 426 (609)
|..+|..+|+.+-.+......+ ..-...+..++.++.+|.+..+|..++. .+....... . ....+.-
T Consensus 172 l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~-~~W~~~~~~~~~~~~~~~~~~~~~ 250 (394)
T PRK11138 172 LQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQ-LIWQQRISQPTGATEIDRLVDVDT 250 (394)
T ss_pred EEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCCh-hhheeccccCCCccchhcccccCC
Confidence 9999999999887765431111 1111223456777888999999988774 333221100 0 0111112
Q ss_pred cc--CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee
Q psy4876 427 SP--DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504 (609)
Q Consensus 427 sp--dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~ 504 (609)
+| .+..++.++.+|.+..+|..+++ .+..... .....+.. .+..+++.. .++.+..+|..+|+.+
T Consensus 251 sP~v~~~~vy~~~~~g~l~ald~~tG~------~~W~~~~--~~~~~~~~--~~~~vy~~~---~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 251 TPVVVGGVVYALAYNGNLVALDLRSGQ------IVWKREY--GSVNDFAV--DGGRIYLVD---QNDRVYALDTRGGVEL 317 (394)
T ss_pred CcEEECCEEEEEEcCCeEEEEECCCCC------EEEeecC--CCccCcEE--ECCEEEEEc---CCCeEEEEECCCCcEE
Confidence 22 34567777889999999999884 3322211 11112222 234555543 7999999999999876
Q ss_pred EEEcC--CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEE-EEEeCCCCEEEEEECCCCEEEE
Q psy4876 505 DSIDT--KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLN-LAMSPDETTVLSAGADETLRLW 581 (609)
Q Consensus 505 ~~~~~--~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~-l~~spdg~~L~s~s~Dg~I~iW 581 (609)
-.... .....+... .+..+++ +..+|.|+++|..+++.+....-....+.. ..+ .+..|+.++.||.|..+
T Consensus 318 W~~~~~~~~~~~sp~v--~~g~l~v--~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 318 WSQSDLLHRLLTAPVL--YNGYLVV--GDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAI 391 (394)
T ss_pred EcccccCCCcccCCEE--ECCEEEE--EeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEE
Confidence 54432 112222222 2455666 447999999999999988877544333322 222 34578889999999887
Q ss_pred Ec
Q psy4876 582 KI 583 (609)
Q Consensus 582 dl 583 (609)
+.
T Consensus 392 ~~ 393 (394)
T PRK11138 392 TR 393 (394)
T ss_pred eC
Confidence 64
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.1e-05 Score=75.60 Aligned_cols=234 Identities=15% Similarity=0.185 Sum_probs=133.0
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCCCC--eeEEEec---CCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEE
Q psy4876 341 VAWIQEGYMLGVGTSLGTVQLWDVSAK--KKCRTMD---GHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 341 v~~spdg~~Lasgs~dg~I~iwd~~~~--~~~~~l~---~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~ 413 (609)
++.+.+|+.||+- .|..|.|=...+. ..+...+ .....-..++| ++.+|+.+...|+|.++|+... .+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~--~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS--ELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc--eeEE
Confidence 5677899988865 4567777665542 2222222 22334567888 6789999999999999999864 2223
Q ss_pred Ecc-------CCCCeEEEEEccCC------CEEEEEeCCCcEEEEeCCCCCCCCCccceEee--cC-CcccEEEEEEcCC
Q psy4876 414 LQN-------HTQEVCGLKWSPDG------RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL--SR-HQAAVKAIAWCPW 477 (609)
Q Consensus 414 ~~~-------h~~~V~~l~~spdg------~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~--~~-h~~~V~~l~~sp~ 477 (609)
+.. -...|.++.|.+-. ..|++-..+|.++-|-+..+.. ...+..+.+ .. +...|.++.++|.
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~-q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTN-QGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccC-CcceeeEEEEecccCCCceeEEEEcCC
Confidence 221 23567778776521 2466667788887777543211 111233333 22 4678999999997
Q ss_pred CCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCC------eEEEEECCCCceEEEEe
Q psy4876 478 SPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQN------QLIIWKYPSLVKVAELH 551 (609)
Q Consensus 478 ~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg------~I~Iwd~~~~~~~~~l~ 551 (609)
. +||++|| .....-..+. .....+++-..-.+..+...+..++++ +..+|.+.+........
T Consensus 159 h-~LLlVgG-~~~~~~~~s~----------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~ 226 (282)
T PF15492_consen 159 H-RLLLVGG-CEQNQDGMSK----------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQG 226 (282)
T ss_pred C-CEEEEec-cCCCCCcccc----------ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccc
Confidence 6 4665664 2322100000 001122222222222221111111121 12344444332222222
Q ss_pred CCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 552 GHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 552 ~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
.....|..|..||||..||+...+|.|.+|++-.-...+
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR 265 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc
Confidence 356789999999999999999999999999997655433
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.3e-07 Score=84.47 Aligned_cols=150 Identities=15% Similarity=0.292 Sum_probs=96.9
Q ss_pred EccCCCEEEEEeCCCeEEEEeCCCCee-EEEecC-CCCce-EEEEecCCEEEEEec-----CCeEEEEEcCCCCeeEEEE
Q psy4876 343 WIQEGYMLGVGTSLGTVQLWDVSAKKK-CRTMDG-HDVRV-GALAWNTYILSSGSR-----CGNIVHHDVRSRDHKVALL 414 (609)
Q Consensus 343 ~spdg~~Lasgs~dg~I~iwd~~~~~~-~~~l~~-h~~~V-~~l~~~~~~L~sgs~-----dg~I~iwd~~~~~~~~~~~ 414 (609)
.+--++.++++..||.+.+++.+.... .+.+.. |.+.. .++.-.++.+.++.. -+..+.|+++.....+...
T Consensus 97 ~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 97 CTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred ccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc
Confidence 334467899999999999999765111 111111 11111 111113444443321 2345677776543222222
Q ss_pred ccCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeE
Q psy4876 415 QNHTQEVCGLKWSPD-GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHI 493 (609)
Q Consensus 415 ~~h~~~V~~l~~spd-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I 493 (609)
.. ...|.+++-+|. ..++++|+.||.|-+||.+... .+...+..|..++..+-|+|..+.-|.++ +.||.+
T Consensus 177 ~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-----~p~S~l~ahk~~i~eV~FHpk~p~~Lft~--sedGsl 248 (319)
T KOG4714|consen 177 KA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-----MPVSLLKAHKAEIWEVHFHPKNPEHLFTC--SEDGSL 248 (319)
T ss_pred cc-cccchhhhCCcccccEEEEecCCCeEEEEEccccc-----chHHHHHHhhhhhhheeccCCCchheeEe--cCCCcE
Confidence 22 234999999994 5567888899999999999873 56777889999999999999776655555 489999
Q ss_pred EEEECCC
Q psy4876 494 YFWNVSS 500 (609)
Q Consensus 494 ~iwd~~t 500 (609)
.-||..+
T Consensus 249 w~wdas~ 255 (319)
T KOG4714|consen 249 WHWDAST 255 (319)
T ss_pred EEEcCCC
Confidence 9999764
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.3e-07 Score=96.29 Aligned_cols=264 Identities=15% Similarity=0.216 Sum_probs=164.4
Q ss_pred CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeE
Q psy4876 281 NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTV 359 (609)
Q Consensus 281 ~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I 359 (609)
.+++++.|++|++|.+....... +.-.+.+++. |..+|.++-|-.+-++++++ ||-|
T Consensus 749 SFiSASkDKTVKLWSik~EgD~~--------------------~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 749 SFISASKDKTVKLWSIKPEGDEI--------------------GTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred ceeeccCCceEEEEEeccccCcc--------------------ccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 38889999999999997621110 2333455566 99999999999988888654 6789
Q ss_pred EEEeCCCCeeEEEecC-----CCCceEEEEe-cCCEEEEE-ecCCeEEEEEcCCCCeeEEEE-----ccCCCCeEEEEEc
Q psy4876 360 QLWDVSAKKKCRTMDG-----HDVRVGALAW-NTYILSSG-SRCGNIVHHDVRSRDHKVALL-----QNHTQEVCGLKWS 427 (609)
Q Consensus 360 ~iwd~~~~~~~~~l~~-----h~~~V~~l~~-~~~~L~sg-s~dg~I~iwd~~~~~~~~~~~-----~~h~~~V~~l~~s 427 (609)
.+||.--+..+..+.. ..+.|.|+.- +..++++| +...+|+++|.+..+. ...+ .+....+.+++.-
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~-~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW-TCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccc-eeeEEeccCCCCchheeEEEec
Confidence 9999988777664432 2234445443 56666666 6788999999997652 2222 3455778999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEE-EECCCCceeEE
Q psy4876 428 PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYF-WNVSSGACLDS 506 (609)
Q Consensus 428 pdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~i-wd~~t~~~~~~ 506 (609)
+.|+++|.+-..|+|.+.|.++|. .+..+....-....++ .|....+.-+. .|..+.+ |....|.....
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~------vINswrpmecdllqla-apsdq~L~~sa---ldHslaVnWhaldgimh~q 955 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGK------VINSWRPMECDLLQLA-APSDQALAQSA---LDHSLAVNWHALDGIMHLQ 955 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCc------eeccCCcccchhhhhc-CchhHHHHhhc---ccceeEeeehhcCCeeeec
Confidence 999999999999999999999994 3443333333333333 23232333332 5778877 87666654433
Q ss_pred EcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC----CceEEEEe--CCCCCEEEEEEeCCCCEEEEEECCCCEEE
Q psy4876 507 IDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS----LVKVAELH--GHSARVLNLAMSPDETTVLSAGADETLRL 580 (609)
Q Consensus 507 ~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~----~~~~~~l~--~h~~~V~~l~~spdg~~L~s~s~Dg~I~i 580 (609)
.+...... --...-|..++++. ..+.+.||--.. ...+..++ ...+..+.++.-|-..-+..|...|.|++
T Consensus 956 ~kpppepa-hflqsvgpSLV~a~--~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 956 DKPPPEPA-HFLQSVGPSLVTAQ--NGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cCCCCcch-hhhhccCceeEEec--cCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 33221110 01112244455533 345556663210 11111222 23456788888887777777888888875
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.1e-06 Score=86.94 Aligned_cols=225 Identities=18% Similarity=0.297 Sum_probs=155.7
Q ss_pred EEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEE
Q psy4876 274 LIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGV 352 (609)
Q Consensus 274 ~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Las 352 (609)
.+.||.|+ .+|.-...+|.|++... -.+.....+ .-..|....|+|.++.||.
T Consensus 310 ~frWS~DdKy~Arm~~~sisIyEtps-------------------------f~lld~Ksl-ki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 310 IFRWSHDDKYFARMTGNSISIYETPS-------------------------FMLLDKKSL-KISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred eEEeccCCceeEEeccceEEEEecCc-------------------------eeeeccccc-CCccccCcccCCCcceEEE
Confidence 47899885 77766668999998755 111111122 4577899999999999886
Q ss_pred EeCC-----CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEe----------cCCeEEEEEcCCCCeeEEEEc
Q psy4876 353 GTSL-----GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGS----------RCGNIVHHDVRSRDHKVALLQ 415 (609)
Q Consensus 353 gs~d-----g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs----------~dg~I~iwd~~~~~~~~~~~~ 415 (609)
-+.. ..+.|..+.+++.+++-.-|.-.-..+.| +|.+|+.-- .-..+-|+.++..+.++..+.
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve 443 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE 443 (698)
T ss_pred EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee
Confidence 4432 35788888888888887766666666777 677776532 222456677776654444443
Q ss_pred cCCCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCe
Q psy4876 416 NHTQEVCGLKWSPDGRYLASGGN---DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH 492 (609)
Q Consensus 416 ~h~~~V~~l~~spdg~~lasgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~ 492 (609)
-...|...+|-|.|..+++-+. ..++.+|-+++.. .....+..+.. ...+.+.|+|.|..+++.+-++..|.
T Consensus 444 -lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~--~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~ 518 (698)
T KOG2314|consen 444 -LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI--KKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGD 518 (698)
T ss_pred -cchheeeeeeccCCCeEEEEEccccccceeEEEeecCC--Cchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccc
Confidence 4577889999999998877553 3578888887421 12244444433 45678999999988887776678999
Q ss_pred EEEEECCCCceeEE-EcCCCCeEEEEEcCCCCeEEEEE
Q psy4876 493 IYFWNVSSGACLDS-IDTKSQVCALLWNSDYKELVSAH 529 (609)
Q Consensus 493 I~iwd~~t~~~~~~-~~~~~~v~sl~~s~~g~~l~~~s 529 (609)
+.++|+....+... ...|...+.+.|.|.|+|+++++
T Consensus 519 l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 519 LEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred eEEEecchhhhhhccCccccccccceECCCCCEEEEee
Confidence 99999985333222 23456788999999999999865
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-06 Score=88.71 Aligned_cols=242 Identities=14% Similarity=0.140 Sum_probs=155.5
Q ss_pred CCCCeEEEEEccCCC-EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCe
Q psy4876 334 GNENVCSVAWIQEGY-MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDH 409 (609)
Q Consensus 334 h~~~V~~v~~spdg~-~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~ 409 (609)
+...|.+++|+|..+ ++..++.+..|.|.|+++...+..+..+ ..+++++|+ .+++++|..+|.|.|||++..+.
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 678899999999876 7788999999999999999888888877 889999994 68999999999999999998764
Q ss_pred eEEEEcc--CCCCeEEEEE------ccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcE
Q psy4876 410 KVALLQN--HTQEVCGLKW------SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 410 ~~~~~~~--h~~~V~~l~~------spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 481 (609)
.+..+.+ ...+|..++. .+.|.+|+....+ +..|++...... ..++..+ +..+...+++.++-.+++
T Consensus 271 ~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~--~p~vlel-e~pG~cismqy~~~snh~ 345 (463)
T KOG1645|consen 271 PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAEC--LPCVLEL-EPPGICISMQYHGVSNHL 345 (463)
T ss_pred hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccC--CCccccc-CCCcceeeeeecCccceE
Confidence 4443332 2234444433 3345555555443 566766543211 1222222 345677788888887888
Q ss_pred EEEEeccCC-----CeEEE-EECCCCceeEEEc-C--CCC-----eEEEEE-cCCCCeEEEEEecCCCeEEEEECCCCce
Q psy4876 482 LASGGGTAD-----RHIYF-WNVSSGACLDSID-T--KSQ-----VCALLW-NSDYKELVSAHGFAQNQLIIWKYPSLVK 546 (609)
Q Consensus 482 lasggGs~D-----g~I~i-wd~~t~~~~~~~~-~--~~~-----v~sl~~-s~~g~~l~~~sG~~dg~I~Iwd~~~~~~ 546 (609)
+++.- +.- ..|-. -|-.+|..+.... + ++. -....+ .++.+++ ++.|.+.+.+.+||..+++.
T Consensus 346 l~tyR-s~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~i-v~~gd~tn~lil~D~~s~ev 423 (463)
T KOG1645|consen 346 LLTYR-SNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYI-VVVGDSTNELILQDPHSFEV 423 (463)
T ss_pred EEEec-CCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEE-EEecCCcceeEEeccchhhe
Confidence 88763 110 11111 1222343332221 0 110 111222 3444444 44466889999999999999
Q ss_pred EEEEeCCCCCEEEEEEeC-CCC-EEEEEECCCCEEEEEcCC
Q psy4876 547 VAELHGHSARVLNLAMSP-DET-TVLSAGADETLRLWKIFE 585 (609)
Q Consensus 547 ~~~l~~h~~~V~~l~~sp-dg~-~L~s~s~Dg~I~iWdl~~ 585 (609)
+..+.-. .+|.+++... +|. +|++- .|..++||+.+.
T Consensus 424 vQ~l~~~-epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 424 VQTLALS-EPVLDICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred eeecccC-cceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence 9988644 7898888654 444 55544 566888887653
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.6e-05 Score=83.59 Aligned_cols=236 Identities=8% Similarity=-0.004 Sum_probs=139.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeE-EE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVC-GL 424 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~-~l 424 (609)
++..+++++.+|.+..+|.++|+.+-...............+..++.+..+|.|..+|..+++ .+.........+. ..
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~-~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGA-VKWTVNLDVPSLTLRG 197 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCC-EeeeecCCCCcccccC
Confidence 356777888999999999999998877664432222223345667778889999999999885 4544432211000 00
Q ss_pred EEcc--CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCc-ccEEEEEEcC--CCCcEEEEEeccCCCeEEEEECC
Q psy4876 425 KWSP--DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQ-AAVKAIAWCP--WSPNVLASGGGTADRHIYFWNVS 499 (609)
Q Consensus 425 ~~sp--dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp--~~~~llasggGs~Dg~I~iwd~~ 499 (609)
.-+| .+..++.++.+|.+..+|..+++..+..........+. .....+.-+| .+..+++.+ .++.+..+|..
T Consensus 198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~---~~g~l~ald~~ 274 (394)
T PRK11138 198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA---YNGNLVALDLR 274 (394)
T ss_pred CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE---cCCeEEEEECC
Confidence 0112 23356777888999999999884332211000000000 0000111111 133455543 68999999999
Q ss_pred CCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCC-EEEEEEeCCCCEEEEEECCCCE
Q psy4876 500 SGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSAR-VLNLAMSPDETTVLSAGADETL 578 (609)
Q Consensus 500 t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~L~s~s~Dg~I 578 (609)
+|+.+-....... ..+. ..+..+++. ..++.|..+|..+++.+.....-... ...... .+..|+.++.||.|
T Consensus 275 tG~~~W~~~~~~~-~~~~--~~~~~vy~~--~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l 347 (394)
T PRK11138 275 SGQIVWKREYGSV-NDFA--VDGGRIYLV--DQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYL 347 (394)
T ss_pred CCCEEEeecCCCc-cCcE--EECCEEEEE--cCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEE
Confidence 9988766543321 1122 235566663 37899999999999876543221111 122222 25578889999999
Q ss_pred EEEEcCCCccchhh
Q psy4876 579 RLWKIFEKVKSKKK 592 (609)
Q Consensus 579 ~iWdl~~~~~~~k~ 592 (609)
.+.|..+++..-+.
T Consensus 348 ~~ld~~tG~~~~~~ 361 (394)
T PRK11138 348 HWINREDGRFVAQQ 361 (394)
T ss_pred EEEECCCCCEEEEE
Confidence 99999888765443
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.2e-06 Score=93.07 Aligned_cols=184 Identities=13% Similarity=0.190 Sum_probs=134.6
Q ss_pred cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC
Q psy4876 386 NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH 465 (609)
Q Consensus 386 ~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h 465 (609)
++..++.|+-...+..+|+++.. ..+...-....|.-+. .+++++.+|...|+|.+-|.++. +.++++..|
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~-e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~------~~iht~~aH 216 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEK-ETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSF------ETIHTFDAH 216 (1118)
T ss_pred CCcceeecchhhheeeeecccce-eeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcC------ceeeeeecc
Confidence 35677788877888899998763 3444333333454444 46789999999999999999988 899999999
Q ss_pred cccEEEEEEcCCCCcEEEEEec-------cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEE
Q psy4876 466 QAAVKAIAWCPWSPNVLASGGG-------TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLII 538 (609)
Q Consensus 466 ~~~V~~l~~sp~~~~llasggG-------s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~I 538 (609)
.+.|.++... | ++|+++|- ..|..|+|||++..+.+.-+..+....-+.|+|.....++++ +..|+..+
T Consensus 217 s~siSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~-S~sGq~q~ 292 (1118)
T KOG1275|consen 217 SGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVT-SQSGQFQF 292 (1118)
T ss_pred ccceeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEE-ecccceee
Confidence 9999887764 4 56666652 236779999999888777666665556677888765544432 26888888
Q ss_pred EECCCC----ceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEE
Q psy4876 539 WKYPSL----VKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWK 582 (609)
Q Consensus 539 wd~~~~----~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWd 582 (609)
.|..+. ..+..+......+..++++++|+.++.|..+|.|.+|.
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 884321 12222333445699999999999999999999999998
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.3e-07 Score=91.72 Aligned_cols=160 Identities=19% Similarity=0.227 Sum_probs=116.1
Q ss_pred EEEccC--CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCC----CeeEE
Q psy4876 341 VAWIQE--GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSR----DHKVA 412 (609)
Q Consensus 341 v~~spd--g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~----~~~~~ 412 (609)
++|+-+ |-.++ .+.+..|-+-|+++|- .+.+. ..+.|.++.| .+.+++.|+++|.|..+|++.+ ....+
T Consensus 217 CawSlni~gyhfs-~G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYHFS-VGLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceeeec-ccccceeEEEEeeccc-ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 367643 33433 4445668888888753 23333 6678888888 4789999999999999999976 23444
Q ss_pred EEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEE--EEcCCCCcEEEEEeccC
Q psy4876 413 LLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI--AWCPWSPNVLASGGGTA 489 (609)
Q Consensus 413 ~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l--~~sp~~~~llasggGs~ 489 (609)
.+. |.+.|+++.... ++++|++.+.+|.|.+||++..+.. .-+.++.+|...-.-+ ..++... +++++| .
T Consensus 294 rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~---~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~G--d 366 (425)
T KOG2695|consen 294 RLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK---KSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVG--D 366 (425)
T ss_pred EEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc---cceeeeecccccccccccccccccc-eEEEcc--C
Confidence 443 899999998887 8889999999999999999976221 2378888886543333 3344443 444443 8
Q ss_pred CCeEEEEECCCCceeEEEcCC
Q psy4876 490 DRHIYFWNVSSGACLDSIDTK 510 (609)
Q Consensus 490 Dg~I~iwd~~t~~~~~~~~~~ 510 (609)
|...+||.++.|..+.++...
T Consensus 367 DcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 367 DCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eeEEEEEecccCceeeccCCC
Confidence 999999999999999888754
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.4e-07 Score=86.63 Aligned_cols=199 Identities=17% Similarity=0.250 Sum_probs=121.8
Q ss_pred eEEEEe-cCCEEEEEecCCeEEEEEcCC-----------CCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q psy4876 380 VGALAW-NTYILSSGSRCGNIVHHDVRS-----------RDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSG 447 (609)
Q Consensus 380 V~~l~~-~~~~L~sgs~dg~I~iwd~~~-----------~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~ 447 (609)
+..+.+ ....|+++..++.+.....-. +-.....+..|.+.-.+-+.+--++-++++..||.+.+++.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 555555 356677777666655443321 11223334444443333333444667999999999999998
Q ss_pred CCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe-c--cCCCeEEEEECCCCc-eeEEEcCCCCeEEEEEcCCCC
Q psy4876 448 VPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG-G--TADRHIYFWNVSSGA-CLDSIDTKSQVCALLWNSDYK 523 (609)
Q Consensus 448 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg-G--s~Dg~I~iwd~~t~~-~~~~~~~~~~v~sl~~s~~g~ 523 (609)
+..- +..+++..-...-.+.+.+..+ .++.+++ | ..-+..+.|+++-.+ .+........|.+++-+|..+
T Consensus 119 ~~~~-----~~~~~i~~~~~~~as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq 192 (319)
T KOG4714|consen 119 DKDL-----ALMSRIPSIHSGSASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQ 192 (319)
T ss_pred hHHH-----hhhhhcccccccccccceeecc-cEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccc
Confidence 7521 1111221111112233333334 3444332 1 123455667665322 222222334599999999888
Q ss_pred eEEEEEecCCCeEEEEECCCCceEE-EEeCCCCCEEEEEEeC-CCCEEEEEECCCCEEEEEcCC
Q psy4876 524 ELVSAHGFAQNQLIIWKYPSLVKVA-ELHGHSARVLNLAMSP-DETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 524 ~l~~~sG~~dg~I~Iwd~~~~~~~~-~l~~h~~~V~~l~~sp-dg~~L~s~s~Dg~I~iWdl~~ 585 (609)
.++++ |..||.+-+||.+...... .+..|...|+.+.|+| ++..|++++.||.+..||-.+
T Consensus 193 ~~v~c-gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 193 HLVCC-GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cEEEE-ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 87766 6799999999998875433 4578999999999999 677999999999999999875
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.7e-06 Score=93.65 Aligned_cols=181 Identities=15% Similarity=0.222 Sum_probs=139.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
++..++.|+-...+..+|+.+.+..+........|.-+..+++++++|...|+|.+-|.++. +.++++..|++.|..+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~-~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSF-ETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcC-ceeeeeeccccceeeee
Confidence 34566677777789999999988888887777779999999999999999999999999987 58999999999998655
Q ss_pred EccCCCEEEEEeC---------CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEE
Q psy4876 426 WSPDGRYLASGGN---------DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496 (609)
Q Consensus 426 ~spdg~~lasgs~---------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iw 496 (609)
. .|+.|+++|. |..|+|||+++. +.+.-+.-+.++ .-+.|+|.-...+++. +..|...+-
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm------ral~PI~~~~~P-~flrf~Psl~t~~~V~--S~sGq~q~v 293 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM------RALSPIQFPYGP-QFLRFHPSLTTRLAVT--SQSGQFQFV 293 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhh------hccCCcccccCc-hhhhhcccccceEEEE--ecccceeec
Confidence 5 5889999875 556899999987 333333333333 5567888666666665 378999999
Q ss_pred ECCC-Cc---eeEEEc-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEE
Q psy4876 497 NVSS-GA---CLDSID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWK 540 (609)
Q Consensus 497 d~~t-~~---~~~~~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd 540 (609)
|..+ +. -+..+. ..+.+..+.+++++..++. |..+|.|.+|.
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alaf--gd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAF--GDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEE--ecccCcEeeec
Confidence 8432 11 122333 3456999999999999999 77999999997
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00017 Score=72.59 Aligned_cols=222 Identities=14% Similarity=0.129 Sum_probs=151.0
Q ss_pred eEEEEEcc-CCCEEEEEeCCCe-EEEEeCCCCeeEEEecCCCCce--EEEEe--cCCEEEEEec-----CCeEEEEEcCC
Q psy4876 338 VCSVAWIQ-EGYMLGVGTSLGT-VQLWDVSAKKKCRTMDGHDVRV--GALAW--NTYILSSGSR-----CGNIVHHDVRS 406 (609)
Q Consensus 338 V~~v~~sp-dg~~Lasgs~dg~-I~iwd~~~~~~~~~l~~h~~~V--~~l~~--~~~~L~sgs~-----dg~I~iwd~~~ 406 (609)
...++.+| .+..++++-.-|. ..+||..+++....+....++- ..-.| +|.+|++.-. .|.|-|||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 44678888 4577777777664 7889999999888776544432 12344 6888888654 47899999996
Q ss_pred CCeeEEEEccCCCCeEEEEEccCCCEEEEEeC------------------CCcEEEEeCCCCCCCCCccceEe--e--cC
Q psy4876 407 RDHKVALLQNHTQEVCGLKWSPDGRYLASGGN------------------DNLLNIWSGVPGQHTFSTQPIHS--L--SR 464 (609)
Q Consensus 407 ~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~------------------Dg~I~iwd~~~~~~~~~~~~~~~--~--~~ 464 (609)
.-..+..+..|.-.-..+.+.|||+.|+++.. +-.+.+.|..++ +.+.+ + ..
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG------~ll~q~~Lp~~~ 160 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG------ALLEQVELPPDL 160 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC------ceeeeeecCccc
Confidence 55678888888877888999999988887631 223555566666 44443 4 34
Q ss_pred CcccEEEEEEcCCCCcEEEEEeccCCC-------eEEEEECCCCceeEEEc--------CCCCeEEEEEcCCCCeEEEEE
Q psy4876 465 HQAAVKAIAWCPWSPNVLASGGGTADR-------HIYFWNVSSGACLDSID--------TKSQVCALLWNSDYKELVSAH 529 (609)
Q Consensus 465 h~~~V~~l~~sp~~~~llasggGs~Dg-------~I~iwd~~t~~~~~~~~--------~~~~v~sl~~s~~g~~l~~~s 529 (609)
|...|..|++.++|. +++... ..+ -|.+++. ++.+..+. ....+-+|+++.++.++++++
T Consensus 161 ~~lSiRHLa~~~~G~-V~~a~Q--~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts 235 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGT-VAFAMQ--YQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS 235 (305)
T ss_pred cccceeeEEecCCCc-EEEEEe--cCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC
Confidence 777899999999873 333221 111 1333332 33333332 235789999999999998765
Q ss_pred ecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEEC
Q psy4876 530 GFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGA 574 (609)
Q Consensus 530 G~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~ 574 (609)
- ..|.+.+||..++..+....- ..+..++-.+++ +++|.+.
T Consensus 236 P-rGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 236 P-RGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred C-CCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCC
Confidence 3 788999999999998876543 345677776666 5665554
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.5e-07 Score=62.39 Aligned_cols=39 Identities=33% Similarity=0.552 Sum_probs=36.6
Q ss_pred CceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEE
Q psy4876 544 LVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWK 582 (609)
Q Consensus 544 ~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWd 582 (609)
++++..+.+|.+.|.+|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.8e-06 Score=85.92 Aligned_cols=277 Identities=13% Similarity=0.175 Sum_probs=182.8
Q ss_pred EEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCE
Q psy4876 272 LNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYM 349 (609)
Q Consensus 272 v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~ 349 (609)
|..+...... ++.++.||.++.|.-... .-.+-+..+. |.+.|.+++.+-+|..
T Consensus 12 i~hv~~tka~fiiqASlDGh~KFWkKs~i------------------------sGvEfVKhFraHL~~I~sl~~S~dg~L 67 (558)
T KOG0882|consen 12 ITHVFPTKAKFIIQASLDGHKKFWKKSRI------------------------SGVEFVKHFRAHLGVILSLAVSYDGWL 67 (558)
T ss_pred eeeEeeehhheEEeeecchhhhhcCCCCc------------------------cceeehhhhHHHHHHHHhhhcccccee
Confidence 3334444433 778999999999976430 1123333344 8889999999999999
Q ss_pred EEEEeC-CCeEEEEeCCCCeeEEEecCCCCceEEEEe---cC---CEEE-EEecCCeEEEEEcCCCC-eeEEEEccCCCC
Q psy4876 350 LGVGTS-LGTVQLWDVSAKKKCRTMDGHDVRVGALAW---NT---YILS-SGSRCGNIVHHDVRSRD-HKVALLQNHTQE 420 (609)
Q Consensus 350 Lasgs~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~---~~---~~L~-sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~ 420 (609)
+++++. |..++++|+++-..+..++-. ..-..+.| .| ..++ +.-.+|.|.++|-.... +....-.-|..+
T Consensus 68 ~~Sv~d~Dhs~KvfDvEn~DminmiKL~-~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sP 146 (558)
T KOG0882|consen 68 FRSVEDPDHSVKVFDVENFDMINMIKLV-DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSP 146 (558)
T ss_pred EeeccCcccceeEEEeeccchhhhcccc-cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCc
Confidence 999777 999999999876554333311 11123334 23 1333 34467899999987654 334445579999
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCC------CCCCCC---ccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVP------GQHTFS---TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~Dg~I~iwd~~~------~~~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
|.++.+++-+..+++....|.|..|.... ....+. ..-+..+........++.|+|++..+-..+ .|.
T Consensus 147 V~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~---~Dr 223 (558)
T KOG0882|consen 147 VKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN---PDR 223 (558)
T ss_pred eEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC---ccc
Confidence 99999999999999999999999999873 100000 011222333455678999999997665553 799
Q ss_pred eEEEEECCCCceeEEEcC---------------------------------C-CCeEEEEEcCCCCeEEEEEecCCCeEE
Q psy4876 492 HIYFWNVSSGACLDSIDT---------------------------------K-SQVCALLWNSDYKELVSAHGFAQNQLI 537 (609)
Q Consensus 492 ~I~iwd~~t~~~~~~~~~---------------------------------~-~~v~sl~~s~~g~~l~~~sG~~dg~I~ 537 (609)
.|++++..+|+.++.++. . ..-+.++|...+++|+.++ ---|+
T Consensus 224 kVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t---~~gik 300 (558)
T KOG0882|consen 224 KVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT---ILGIK 300 (558)
T ss_pred EEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec---ceeEE
Confidence 999999999987655431 0 1235678888899988743 34588
Q ss_pred EEECCCCceEEEEeCC---------------------------CCCEEEEEEeCCCCEEEEEECCCCEEEE
Q psy4876 538 IWKYPSLVKVAELHGH---------------------------SARVLNLAMSPDETTVLSAGADETLRLW 581 (609)
Q Consensus 538 Iwd~~~~~~~~~l~~h---------------------------~~~V~~l~~spdg~~L~s~s~Dg~I~iW 581 (609)
|.++.+.+.+..+-.. ..++ +.+.+|-..++++-....+++|
T Consensus 301 vin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~--~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 301 VINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL--LEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcc--cccCCCCeEEEeeeecceEEEE
Confidence 8888877766554210 1111 2255566677777777777777
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0002 Score=72.00 Aligned_cols=219 Identities=14% Similarity=0.147 Sum_probs=138.3
Q ss_pred EEEecCCC--eEEEEc--CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCC
Q psy4876 274 LIDWSHFN--VLAVAL--GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGY 348 (609)
Q Consensus 274 ~l~wsp~~--lla~s~--dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~ 348 (609)
.++.+|.. .++.+. +....+||..+ +.......-. ...---.-.|++||+
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~-------------------------g~~~~~~~a~~gRHFyGHg~fs~dG~ 63 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRT-------------------------GQLLQRLWAPPGRHFYGHGVFSPDGR 63 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCC-------------------------CceeeEEcCCCCCEEecCEEEcCCCC
Confidence 46667743 444444 45678899988 5544333322 111222578999999
Q ss_pred EEEEEeC-----CCeEEEEeCC-CCeeEEEecCCCCceEEEEe--cCCEEEEEe------------------cCCeEEEE
Q psy4876 349 MLGVGTS-----LGTVQLWDVS-AKKKCRTMDGHDVRVGALAW--NTYILSSGS------------------RCGNIVHH 402 (609)
Q Consensus 349 ~Lasgs~-----dg~I~iwd~~-~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs------------------~dg~I~iw 402 (609)
+|++.-. .|.|-|||.. +-+.+.++..|.-.-..+.+ ++..|+++- .+..+...
T Consensus 64 ~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~l 143 (305)
T PF07433_consen 64 LLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYL 143 (305)
T ss_pred EEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEE
Confidence 9998543 4889999998 56778888877666566666 555555542 23345556
Q ss_pred EcCCCCeeEEE--E--ccCCCCeEEEEEccCCCEEEEEeCCC-------cEEEEeCCCCCCCCCccceEeecCCcccEEE
Q psy4876 403 DVRSRDHKVAL--L--QNHTQEVCGLKWSPDGRYLASGGNDN-------LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKA 471 (609)
Q Consensus 403 d~~~~~~~~~~--~--~~h~~~V~~l~~spdg~~lasgs~Dg-------~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~ 471 (609)
|..++. .+.. + ..|.-.|..|++.++|..++..-..| .|.+++....- .....+......-.+.+-+
T Consensus 144 d~~sG~-ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~-~~~~~p~~~~~~l~~Y~gS 221 (305)
T PF07433_consen 144 DARSGA-LLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGAL-RLLPAPEEQWRRLNGYIGS 221 (305)
T ss_pred ecCCCc-eeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcc-eeccCChHHHHhhCCceEE
Confidence 666654 3333 3 34777899999999987665544333 24444433210 0000011112234567899
Q ss_pred EEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCC
Q psy4876 472 IAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDY 522 (609)
Q Consensus 472 l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g 522 (609)
|+++.++..+++++- ..+.+.+||..++..+..... ..++.++-..++
T Consensus 222 Ia~~~~g~~ia~tsP--rGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~ 269 (305)
T PF07433_consen 222 IAADRDGRLIAVTSP--RGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDG 269 (305)
T ss_pred EEEeCCCCEEEEECC--CCCEEEEEECCCCCEeecccc-CceeeeeecCCc
Confidence 999999977777764 789999999999998766543 357777777777
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.8e-05 Score=81.90 Aligned_cols=297 Identities=11% Similarity=-0.001 Sum_probs=179.8
Q ss_pred cccccCCccCCceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeee------ee
Q psy4876 258 DRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHL------MD 331 (609)
Q Consensus 258 ~~il~ap~~~~~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~ 331 (609)
.+...+|+-.|+|| ++.++|..|.|+|+-+-+....+++-.|+++.-.-+..... ....+ ..
T Consensus 54 ~~~~v~pg~~deyy---------~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~e---sk~~l~~~~~~~~ 121 (635)
T PRK02888 54 GKYEVAPGELDEYY---------GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNE---SKKVLGEGARGGK 121 (635)
T ss_pred CcccCCCCCcccEE---------EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchh---HHHHhhccccCCc
Confidence 45667788888888 34668889999999999988888888888876655543210 00000 00
Q ss_pred ec-CCCCeEEEEEc---cCCCEEEEEeC-CCeEEEEeCCCCeeEEEecC-CCCceEEEEe----cCCEEEEEe-------
Q psy4876 332 LE-GNENVCSVAWI---QEGYMLGVGTS-LGTVQLWDVSAKKKCRTMDG-HDVRVGALAW----NTYILSSGS------- 394 (609)
Q Consensus 332 ~~-h~~~V~~v~~s---pdg~~Lasgs~-dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~----~~~~L~sgs------- 394 (609)
+. .+..-..+++. -||++|++-.. +..|-..++...++-+.+.- ....+..+.| +..++++++
T Consensus 122 ~~~gD~HHp~~s~t~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plp 201 (635)
T PRK02888 122 YLNGDTHHPHMSFTDGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLP 201 (635)
T ss_pred ccCCCcCCCcccccCCccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccC
Confidence 11 01111122222 36788888764 56677777766554443321 1111112222 112222222
Q ss_pred -----------cCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCC----CcEEEEeCCCCCCCCCccce
Q psy4876 395 -----------RCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGND----NLLNIWSGVPGQHTFSTQPI 459 (609)
Q Consensus 395 -----------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~D----g~I~iwd~~~~~~~~~~~~~ 459 (609)
..+.+.+.|..+.+ ....+.- ......++++++|+++++.+.+ +++...+.... ..+
T Consensus 202 nDGk~l~~~~ey~~~vSvID~etme-V~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~------d~~ 273 (635)
T PRK02888 202 NDGKDLDDPKKYRSLFTAVDAETME-VAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER------DWV 273 (635)
T ss_pred CCCCEeecccceeEEEEEEECccce-EEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccC------ceE
Confidence 23456666766643 3333321 2244667899999998887632 23333332211 111
Q ss_pred EeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC-----CceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCC
Q psy4876 460 HSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS-----GACLDSIDTKSQVCALLWNSDYKELVSAHGFAQN 534 (609)
Q Consensus 460 ~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t-----~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg 534 (609)
..+... . ..++.++|+..++ .++.|.+.|..+ .+.+..+........+.++|||++++++ |..++
T Consensus 274 vvfni~--~--iea~vkdGK~~~V-----~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVa-nklS~ 343 (635)
T PRK02888 274 VVFNIA--R--IEEAVKAGKFKTI-----GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIAN-GKLSP 343 (635)
T ss_pred EEEchH--H--HHHhhhCCCEEEE-----CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEe-CCCCC
Confidence 111100 0 0133456765554 267899999998 4677888888899999999999999987 45799
Q ss_pred eEEEEECCCCce------------EEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 535 QLIIWKYPSLVK------------VAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 535 ~I~Iwd~~~~~~------------~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
+|.|+|+.+.+. +.+..- ...-...+|.++|....|.-.|..|..|++..
T Consensus 344 tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 344 TVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 999999987653 333332 23456789999999888899999999999986
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.6e-05 Score=83.31 Aligned_cols=210 Identities=14% Similarity=0.132 Sum_probs=142.4
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCc-eEEEEe-cC-CEEEEEecCCe-----EEEEEcCCCC-----
Q psy4876 342 AWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVR-VGALAW-NT-YILSSGSRCGN-----IVHHDVRSRD----- 408 (609)
Q Consensus 342 ~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~-V~~l~~-~~-~~L~sgs~dg~-----I~iwd~~~~~----- 408 (609)
+|++.+..+|.|+.+|.|.+++- ..+.++.++.+... |..+.. ++ .+|++.+.|+. |+||++...+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 46788899999999999988873 33555778877777 444433 33 57888777654 8999997542
Q ss_pred eeE--EEEcc-----CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcE
Q psy4876 409 HKV--ALLQN-----HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 409 ~~~--~~~~~-----h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 481 (609)
+.+ ..+.. ...++++++++.+-+.+|+|-.+|.|..+.-+-..... ....-......+|+.+++..++..+
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg--sr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG--SRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc--cceeeeccCCCCceeeEEecCCcee
Confidence 222 11222 35678999999999999999999999988643221110 1122222346789999999998874
Q ss_pred EEEEeccCCCeEEEEECCCCce-eEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe-CCCCCEE
Q psy4876 482 LASGGGTADRHIYFWNVSSGAC-LDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH-GHSARVL 558 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t~~~-~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~-~h~~~V~ 558 (609)
+.+. .-..|.+|.+....+ ...++.++ .+.+..+++....++++ ....|.+|+.+....-..+. ||...+.
T Consensus 187 lFv~---Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca---~~e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 187 LFVA---TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA---GSEFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred EEEE---ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe---cCceEEEEcCCCcceeeeecCCCeEEEE
Confidence 3333 368899999984442 34455554 78888888777756664 36889999988766666665 6665444
Q ss_pred EE
Q psy4876 559 NL 560 (609)
Q Consensus 559 ~l 560 (609)
.+
T Consensus 261 ~~ 262 (933)
T KOG2114|consen 261 VF 262 (933)
T ss_pred EE
Confidence 33
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0002 Score=75.48 Aligned_cols=254 Identities=16% Similarity=0.214 Sum_probs=140.9
Q ss_pred cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q psy4876 287 LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSA 366 (609)
Q Consensus 287 ~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~ 366 (609)
..+.++|||+++ +....+... ...+....|+|+|+.||.... +.|.+++..+
T Consensus 21 ~~~~y~i~d~~~-------------------------~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~ 72 (353)
T PF00930_consen 21 FKGDYYIYDIET-------------------------GEITPLTPP--PPKLQDAKWSPDGKYIAFVRD-NNLYLRDLAT 72 (353)
T ss_dssp EEEEEEEEETTT-------------------------TEEEESS-E--ETTBSEEEE-SSSTEEEEEET-TEEEEESSTT
T ss_pred cceeEEEEecCC-------------------------CceEECcCC--ccccccceeecCCCeeEEEec-CceEEEECCC
Confidence 346889999998 665555443 467889999999999998765 7899999887
Q ss_pred CeeEEEecCCC-----------------CceEEEEe--cCCEEEEEecC-C-----------------------------
Q psy4876 367 KKKCRTMDGHD-----------------VRVGALAW--NTYILSSGSRC-G----------------------------- 397 (609)
Q Consensus 367 ~~~~~~l~~h~-----------------~~V~~l~~--~~~~L~sgs~d-g----------------------------- 397 (609)
+...+...... ..-..+.| +++.|+....| .
T Consensus 73 ~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 73 GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCC
Confidence 75443222110 11233445 34554443221 1
Q ss_pred ------eEEEEEcCCCCee-EEEE---ccCCCCeEEEEEccCCCEEEEE--eCC---CcEEEEeCCCCCCCCCccceEee
Q psy4876 398 ------NIVHHDVRSRDHK-VALL---QNHTQEVCGLKWSPDGRYLASG--GND---NLLNIWSGVPGQHTFSTQPIHSL 462 (609)
Q Consensus 398 ------~I~iwd~~~~~~~-~~~~---~~h~~~V~~l~~spdg~~lasg--s~D---g~I~iwd~~~~~~~~~~~~~~~~ 462 (609)
.+.|+|+.++... +... ..-...+..+.|.+++..|+.. ..+ ..+.++|..++.. +.+..-
T Consensus 153 ~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~----~~~~~e 228 (353)
T PF00930_consen 153 DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET----RVVLEE 228 (353)
T ss_dssp S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC----EEEEEE
T ss_pred CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce----eEEEEe
Confidence 1344555554321 1111 1234568889999998844433 222 2467778876632 222211
Q ss_pred cCCcccE---EEEEEc-CCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEE-EEEcCCCCeEEEEEec---CCC
Q psy4876 463 SRHQAAV---KAIAWC-PWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCA-LLWNSDYKELVSAHGF---AQN 534 (609)
Q Consensus 463 ~~h~~~V---~~l~~s-p~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~s-l~~s~~g~~l~~~sG~---~dg 534 (609)
...+.| ..+.|. +++..++.....+.-.+|.+++...+.......+...|.. +.|+++++.++..+.. ...
T Consensus 229 -~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r 307 (353)
T PF00930_consen 229 -TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGER 307 (353)
T ss_dssp -ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSB
T ss_pred -cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCce
Confidence 122222 345554 7776666655322234566667766654422234446744 7788998888765432 133
Q ss_pred eEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEE
Q psy4876 535 QLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAG 573 (609)
Q Consensus 535 ~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s 573 (609)
.|+..++..+..+..|......-..+.|||+|++++-..
T Consensus 308 ~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 308 HLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred EEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 566666663445555554333336899999999887543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.9e-07 Score=88.43 Aligned_cols=147 Identities=20% Similarity=0.265 Sum_probs=111.9
Q ss_pred EEecCC--C-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEE
Q psy4876 275 IDWSHF--N-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLG 351 (609)
Q Consensus 275 l~wsp~--~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~La 351 (609)
++|+-+ + -+++|.+..|-|-|+++ +-.+. +.....|.++.|...++++.
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvet-------------------------g~~qs---f~sksDVfAlQf~~s~nLv~ 268 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVET-------------------------GHQQS---FQSKSDVFALQFAGSDNLVF 268 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeec-------------------------ccccc---cccchhHHHHHhcccCCeeE
Confidence 467654 2 35688888999999988 43332 22457899999999899999
Q ss_pred EEeCCCeEEEEeCCCC-----eeEEEecCCCCceEEEEe---cCCEEEEEecCCeEEEEEcCCCC--eeEEEEccCCCCe
Q psy4876 352 VGTSLGTVQLWDVSAK-----KKCRTMDGHDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRD--HKVALLQNHTQEV 421 (609)
Q Consensus 352 sgs~dg~I~iwd~~~~-----~~~~~l~~h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V 421 (609)
.|+.+|.|.++|+..+ .+...+ -|...|+++.. ++.+|++.+.+|.|.+||++... ..+..+.+|-..-
T Consensus 269 ~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~ 347 (425)
T KOG2695|consen 269 NGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLS 347 (425)
T ss_pred ecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccc
Confidence 9999999999999764 233334 38888888764 78999999999999999998653 2377788885433
Q ss_pred EEE--EEccCCCEEEEEeCCCcEEEEeCCCC
Q psy4876 422 CGL--KWSPDGRYLASGGNDNLLNIWSGVPG 450 (609)
Q Consensus 422 ~~l--~~spdg~~lasgs~Dg~I~iwd~~~~ 450 (609)
.-+ -..+....++++++|...+||.++.+
T Consensus 348 a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 348 AYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred cccccccccccceEEEccCeeEEEEEecccC
Confidence 333 34556678888999999999999988
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0015 Score=67.70 Aligned_cols=283 Identities=16% Similarity=0.150 Sum_probs=140.9
Q ss_pred ceeEEEEEecCCC--eEE-EEcC--CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEE
Q psy4876 269 DYYLNLIDWSHFN--VLA-VALG--GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAW 343 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla-~s~d--g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~ 343 (609)
..|.+-=+|.++| +|- +..| ..+++.|+++ +++.+|....+ .......+
T Consensus 35 ~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t-------------------------~~i~QLTdg~g-~~~~g~~~ 88 (386)
T PF14583_consen 35 RLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLAT-------------------------GEITQLTDGPG-DNTFGGFL 88 (386)
T ss_dssp ---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT--------------------------EEEE---SS--B-TTT-EE
T ss_pred ceeecCCCcCCCCCEEEEEeccCCCcceEEEEccc-------------------------CEEEECccCCC-CCccceEE
Confidence 3555556778886 443 4444 4788889988 77777776542 22225667
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe----cCCEEEEEec----------------------CC
Q psy4876 344 IQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW----NTYILSSGSR----------------------CG 397 (609)
Q Consensus 344 spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~----~~~~L~sgs~----------------------dg 397 (609)
+++++.|+-...+..|+-.|+++.+....+......+....| ++..++-.-. .+
T Consensus 89 s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~ 168 (386)
T PF14583_consen 89 SPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHC 168 (386)
T ss_dssp -TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---E
T ss_pred ecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCc
Confidence 788888776656678999999998876666666666665666 2444332211 13
Q ss_pred eEEEEEcCCCCeeEEEEccCCCCeEEEEEcc-CCCEEEEEeC---CC-cEEEEeCCCCCCCCCccceEeecCCcccEEEE
Q psy4876 398 NIVHHDVRSRDHKVALLQNHTQEVCGLKWSP-DGRYLASGGN---DN-LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI 472 (609)
Q Consensus 398 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~---Dg-~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l 472 (609)
.|...|+.+++ ...+..-...+..+.|+| |..+|+.|-+ |. .-+||-+++.... ..+++.-. ....+..=
T Consensus 169 ~i~~idl~tG~--~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~--~~~v~~~~-~~e~~gHE 243 (386)
T PF14583_consen 169 RIFTIDLKTGE--RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN--VKKVHRRM-EGESVGHE 243 (386)
T ss_dssp EEEEEETTT----EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS----TTEEEEEE
T ss_pred eEEEEECCCCc--eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc--ceeeecCC-CCcccccc
Confidence 45666777753 334433556778899999 5556666554 22 1255554432110 12222211 12345556
Q ss_pred EEcCCCCcEEEEEe--ccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecC--------------CCeE
Q psy4876 473 AWCPWSPNVLASGG--GTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFA--------------QNQL 536 (609)
Q Consensus 473 ~~sp~~~~llasgg--Gs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~--------------dg~I 536 (609)
-|.|+|..+...+. |..+..|.-+|..+++....... .....+.-+++|++++-=.+.. +--|
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i 322 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWI 322 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EE
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEE
Confidence 79999988877543 23566788899998875433222 2455666678888876432211 1246
Q ss_pred EEEECCCCceEEEEeCCC---------C--CEEEEEEeCCCCEEE-EEECCCCEEEEEcC
Q psy4876 537 IIWKYPSLVKVAELHGHS---------A--RVLNLAMSPDETTVL-SAGADETLRLWKIF 584 (609)
Q Consensus 537 ~Iwd~~~~~~~~~l~~h~---------~--~V~~l~~spdg~~L~-s~s~Dg~I~iWdl~ 584 (609)
++++...+.... +..|. . .=....|+|||++|+ ++...|...||-+.
T Consensus 323 ~~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 323 YLFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp EEEETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred EEeccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 678887665432 22221 1 125689999999665 56668888877654
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.2e-07 Score=98.57 Aligned_cols=200 Identities=19% Similarity=0.322 Sum_probs=135.7
Q ss_pred CCceeEEEEEecCCC---eEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEE
Q psy4876 267 QNDYYLNLIDWSHFN---VLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVA 342 (609)
Q Consensus 267 ~~~~~v~~l~wsp~~---lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~ 342 (609)
.+.-|+.|++|.-+. +++ |..+|.|.+-....... . ....+-.+..++++++
T Consensus 54 sdtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd----------------------S--s~E~tp~~ar~Ct~lA 109 (783)
T KOG1008|consen 54 SDTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD----------------------S--SAEVTPGYARPCTSLA 109 (783)
T ss_pred ccCCCceeehhhcCCchhhhhhccccCceEEeecCCccc----------------------c--cceecccccccccccc
Confidence 345678999998763 555 56689999988765110 0 0111222778999999
Q ss_pred Ecc-CCCEEEEEeC----CCeEEEEeCCCC----eeEEEecC-CCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCee
Q psy4876 343 WIQ-EGYMLGVGTS----LGTVQLWDVSAK----KKCRTMDG-HDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 343 ~sp-dg~~Lasgs~----dg~I~iwd~~~~----~~~~~l~~-h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
|++ |.+.||+|-. |..+.|||+.++ +.-..+.+ ......+++| +..++.+|.....+.++|++..-
T Consensus 110 wneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-- 187 (783)
T KOG1008|consen 110 WNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-- 187 (783)
T ss_pred cccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh--
Confidence 998 4578887743 467999999876 11122222 3445568888 56788899888899999998532
Q ss_pred EEEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEe-CCCCCCCCCccceEeecCCc----ccEEEEEEcCCCCcEEEE
Q psy4876 411 VALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWS-GVPGQHTFSTQPIHSLSRHQ----AAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 411 ~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd-~~~~~~~~~~~~~~~~~~h~----~~V~~l~~sp~~~~llas 484 (609)
.....-.+..|.++.+.| .+.++++-. ||.|.+|| .+.-+ .++..+.... ..+..++|+|....++++
T Consensus 188 ~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnie-----npl~~i~~~~N~~~~~l~~~aycPtrtglla~ 261 (783)
T KOG1008|consen 188 DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIE-----NPLQIILRNENKKPKQLFALAYCPTRTGLLAV 261 (783)
T ss_pred hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhc-----cHHHHHhhCCCCcccceeeEEeccCCcchhhh
Confidence 222222445678888999 888888766 89999999 33321 2333332222 348999999998878887
Q ss_pred EeccCCCeEEEEECC
Q psy4876 485 GGGTADRHIYFWNVS 499 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~ 499 (609)
.. -..++|+++|+.
T Consensus 262 l~-RdS~tIrlydi~ 275 (783)
T KOG1008|consen 262 LS-RDSITIRLYDIC 275 (783)
T ss_pred hc-cCcceEEEeccc
Confidence 74 467899999986
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00097 Score=67.92 Aligned_cols=209 Identities=13% Similarity=0.052 Sum_probs=131.2
Q ss_pred EEEEEccCCCEEEEEe--CCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEE--
Q psy4876 339 CSVAWIQEGYMLGVGT--SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALL-- 414 (609)
Q Consensus 339 ~~v~~spdg~~Lasgs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~-- 414 (609)
..++++.||+++++.- -.-.|.|-|+..++.+.++.- .+...-.-+.+.-|.+-|.||.+....+....+.....
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~ 176 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK 176 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecc
Confidence 3568889999888754 345799999999998887763 22222223345678899999999999998554333221
Q ss_pred --ccCCCCe-EEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC----------CcccEEEEEEcCCCCcE
Q psy4876 415 --QNHTQEV-CGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR----------HQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 415 --~~h~~~V-~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~----------h~~~V~~l~~sp~~~~l 481 (609)
.....++ ..-++...+..++.-+.+|.|+--|+..... .....+.. ..+.-.-+++++....|
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~----~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA----KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE----EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc----cccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 1112222 2334555555666678889999988876532 11222211 01222346777766555
Q ss_pred EEEEeccCC-------CeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC
Q psy4876 482 LASGGGTAD-------RHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 482 lasggGs~D-------g~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~ 552 (609)
++.-....+ ..|.++|+.+++.+..+....++.+|..+.+.+-++.+....++.|.|||..+++.+..+..
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 543210011 35888999999999999988888899999988755543333689999999999999988764
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00057 Score=73.17 Aligned_cols=116 Identities=15% Similarity=0.153 Sum_probs=82.5
Q ss_pred EEEEEcCCCCcEEEEEec--cCCCe----EEEEECCCCce----eEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEE
Q psy4876 470 KAIAWCPWSPNVLASGGG--TADRH----IYFWNVSSGAC----LDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIW 539 (609)
Q Consensus 470 ~~l~~sp~~~~llasggG--s~Dg~----I~iwd~~t~~~----~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iw 539 (609)
.++.|+-..++.+.+-.- +.+|. ..+|++..++. +.++...+.+.+++++|+...++. |..||.|.+|
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvl--GC~DgSiiLy 286 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVL--GCEDGSIILY 286 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEE--EecCCeEEEE
Confidence 456666544444433210 12232 35667665432 344567789999999999999999 5589999999
Q ss_pred ECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 540 KYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 540 d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
|...+... +..+.-.++.++|||+|..+++|+..|.|.+||+.-....
T Consensus 287 D~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 287 DTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred EcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence 98766433 3334556789999999999999999999999998765543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.8e-06 Score=58.32 Aligned_cols=38 Identities=34% Similarity=0.851 Sum_probs=35.9
Q ss_pred eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q psy4876 409 HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWS 446 (609)
Q Consensus 409 ~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd 446 (609)
+.+..+.+|.+.|.+|+|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00023 Score=75.48 Aligned_cols=244 Identities=18% Similarity=0.224 Sum_probs=139.4
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCee-------------------------------------------EEEe
Q psy4876 337 NVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKK-------------------------------------------CRTM 373 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~-------------------------------------------~~~l 373 (609)
.|+.|+|+++..-|++|...|.|.||.....+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 588999999988999999999999986532211 0112
Q ss_pred cCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEEE--cc------CCCCeEEEEEcc-----CC---CEEEEE
Q psy4876 374 DGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVALL--QN------HTQEVCGLKWSP-----DG---RYLASG 436 (609)
Q Consensus 374 ~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~~--~~------h~~~V~~l~~sp-----dg---~~lasg 436 (609)
....+.|++++. |=.+++.|..+|.+.|.|+|.. ..+..- .. ....|+++.|.- |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGP-avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGP-AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTT-EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCC-eEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 234578888888 5689999999999999999876 344331 12 234688888863 33 368999
Q ss_pred eCCCcEEEEeCCC-CCCCCCccceEeecCCcccEEEEE-EcCC-C-------------------CcEEEEEeccCCCeEE
Q psy4876 437 GNDNLLNIWSGVP-GQHTFSTQPIHSLSRHQAAVKAIA-WCPW-S-------------------PNVLASGGGTADRHIY 494 (609)
Q Consensus 437 s~Dg~I~iwd~~~-~~~~~~~~~~~~~~~h~~~V~~l~-~sp~-~-------------------~~llasggGs~Dg~I~ 494 (609)
++.|.+.+|.+.- ....+..+.......+.+.|..+. ++.+ | +.+++++ .+..++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv---Se~~ir 238 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV---SESDIR 238 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE----SSEEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE---cccceE
Confidence 9999999998752 222122223333334556666554 3221 0 1234443 489999
Q ss_pred EEECCCCceeEEEcCCC-CeEEEEEc-----CCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCC----CCEEEEEEeC
Q psy4876 495 FWNVSSGACLDSIDTKS-QVCALLWN-----SDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHS----ARVLNLAMSP 564 (609)
Q Consensus 495 iwd~~t~~~~~~~~~~~-~v~sl~~s-----~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~----~~V~~l~~sp 564 (609)
++...+.+..+...... ....+.+- ..+..|++.. .+|.|++|.++..+.+..+.-+. ..+...++++
T Consensus 239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~--~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~ 316 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF--NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR 316 (395)
T ss_dssp EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE--TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred EEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE--CCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence 99999888776655332 33344452 2455555544 79999999999999998876532 3455678899
Q ss_pred CCCEEEEEECCCCEEEEEcCCCc
Q psy4876 565 DETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 565 dg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
+|..++..+.. .+.++.+....
T Consensus 317 ~Gdi~~~~gps-E~~l~sv~~~~ 338 (395)
T PF08596_consen 317 NGDIFYWTGPS-EIQLFSVWGEG 338 (395)
T ss_dssp TS-EEEE-SSS-EEEEEEEES--
T ss_pred CCCEEEEeCcc-cEEEEEEEccC
Confidence 99977776544 45555554433
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00066 Score=74.78 Aligned_cols=233 Identities=12% Similarity=0.080 Sum_probs=138.2
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCc-----e-EEEEecCCEEEEEe---------cCCeEEEEEcCCCCeeEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVR-----V-GALAWNTYILSSGS---------RCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~-----V-~~l~~~~~~L~sgs---------~dg~I~iwd~~~~~~~~~ 412 (609)
..+++++.+|.|.-+|.++|+.+-.+...... + ....+.+..++.++ .+|.|..+|..+++ .+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~-~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGK-LLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCc-eee
Confidence 67888899999999999999988776643321 1 12223345555554 36789999998875 444
Q ss_pred EEccCCC--------------------Ce-EEEEEccCCCEEEEEeCCC------------------cEEEEeCCCCCCC
Q psy4876 413 LLQNHTQ--------------------EV-CGLKWSPDGRYLASGGNDN------------------LLNIWSGVPGQHT 453 (609)
Q Consensus 413 ~~~~h~~--------------------~V-~~l~~spdg~~lasgs~Dg------------------~I~iwd~~~~~~~ 453 (609)
.+..... .| ...++.+.+..++.++.++ .|.-+|..+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~-- 267 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK-- 267 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC--
Confidence 4432111 01 1234445566777777655 69999999984
Q ss_pred CCccceEeec--CCc--------ccE-EEEEEcCCCC--cEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcC
Q psy4876 454 FSTQPIHSLS--RHQ--------AAV-KAIAWCPWSP--NVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNS 520 (609)
Q Consensus 454 ~~~~~~~~~~--~h~--------~~V-~~l~~sp~~~--~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~ 520 (609)
.+-.+. .|. .++ ..+. .-++. .+++.+ +.+|.+...|..+|+.+-...... ..+..++
T Consensus 268 ----~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g--~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~ 338 (488)
T cd00216 268 ----VKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHA--PKNGFFYVLDRTTGKLISARPEVE--QPMAYDP 338 (488)
T ss_pred ----EEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEE--CCCceEEEEECCCCcEeeEeEeec--cccccCC
Confidence 333332 111 111 1111 01221 244444 489999999999999887765321 1123333
Q ss_pred CCCeEEEEE----------------ecCCCeEEEEECCCCceEEEEeCCC--------CCEEEEEEeCCCCEEEEEECCC
Q psy4876 521 DYKELVSAH----------------GFAQNQLIIWKYPSLVKVAELHGHS--------ARVLNLAMSPDETTVLSAGADE 576 (609)
Q Consensus 521 ~g~~l~~~s----------------G~~dg~I~Iwd~~~~~~~~~l~~h~--------~~V~~l~~spdg~~L~s~s~Dg 576 (609)
..+++.. ...+|.|.-.|..+++.+-...... .....-...-.+..|+.++.||
T Consensus 339 --~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG 416 (488)
T cd00216 339 --GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADG 416 (488)
T ss_pred --ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCC
Confidence 2222211 1136788888999998877664321 1111111112567899999999
Q ss_pred CEEEEEcCCCccchhhhh
Q psy4876 577 TLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 577 ~I~iWdl~~~~~~~k~~~ 594 (609)
.|+.+|..+++..-+.+.
T Consensus 417 ~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 417 YFRAFDATTGKELWKFRT 434 (488)
T ss_pred eEEEEECCCCceeeEEEC
Confidence 999999999887655443
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.5e-05 Score=75.48 Aligned_cols=254 Identities=14% Similarity=0.235 Sum_probs=151.8
Q ss_pred eeEEEEEecCCC-eEE-EEcCCeEEEEeCCCCCCCceE--EecCCccccccccccccccceeeeeeecCCCCeEEEEEcc
Q psy4876 270 YYLNLIDWSHFN-VLA-VALGGSIYLWNGESDSNSKYI--ICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQ 345 (609)
Q Consensus 270 ~~v~~l~wsp~~-lla-~s~dg~I~iWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~sp 345 (609)
-.|+++.|...| .++ |..+|.|.++.-+....+.|. .-|... ..+...+..++-...|..+.|..
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQsh-----------e~EFDYLkSleieEKin~I~w~~ 95 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSH-----------ELEFDYLKSLEIEEKINAIEWFD 95 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhccc-----------ccchhhhhhccHHHHhhheeeec
Confidence 357889998886 333 333589999976653222111 001110 01122222333346788999987
Q ss_pred CC--CEEEEEeCCCeEEEEeCCCCee-------------------------------------E-----EEe-cCCCCce
Q psy4876 346 EG--YMLGVGTSLGTVQLWDVSAKKK-------------------------------------C-----RTM-DGHDVRV 380 (609)
Q Consensus 346 dg--~~Lasgs~dg~I~iwd~~~~~~-------------------------------------~-----~~l-~~h~~~V 380 (609)
++ ..++..+.|.+|++|.+..... + +.+ ..|...|
T Consensus 96 ~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhi 175 (460)
T COG5170 96 DTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHI 175 (460)
T ss_pred CCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEe
Confidence 65 5666788899999998753200 0 011 2466778
Q ss_pred EEEEecC-CEEEEEecCCeEEEEEcCCCCee--EEEEccCC-----CCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCC
Q psy4876 381 GALAWNT-YILSSGSRCGNIVHHDVRSRDHK--VALLQNHT-----QEVCGLKWSPD-GRYLASGGNDNLLNIWSGVPGQ 451 (609)
Q Consensus 381 ~~l~~~~-~~L~sgs~dg~I~iwd~~~~~~~--~~~~~~h~-----~~V~~l~~spd-g~~lasgs~Dg~I~iwd~~~~~ 451 (609)
.+++|+. ...+....|=.|.+|++...+.. +..++.|. .-|++..|+|. ...|...+..|.|++-|++...
T Consensus 176 NSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 176 NSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 8888853 33334456778999998765433 33344453 45888999994 4567777788999999998542
Q ss_pred CCCCccc----------eEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC-CceeEEEcCCC---------
Q psy4876 452 HTFSTQP----------IHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS-GACLDSIDTKS--------- 511 (609)
Q Consensus 452 ~~~~~~~----------~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t-~~~~~~~~~~~--------- 511 (609)
....... ..-+.+-...|..+.|++.|+++++- .=-+|++||++. ..++.++..+.
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR----dyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~ 331 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR----DYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDV 331 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe----ccceEEEEecccccCCceeechHHHHHHHHHhh
Confidence 1110011 11122234568889999998655542 357899999984 45677664221
Q ss_pred -------CeEEEEEcCCCCeEEEEEecCCCeEEEEE
Q psy4876 512 -------QVCALLWNSDYKELVSAHGFAQNQLIIWK 540 (609)
Q Consensus 512 -------~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd 540 (609)
.-..+.|+.+.+.+++ |+..+..-||-
T Consensus 332 YEnDaifdkFeisfSgd~~~v~s--gsy~NNfgiyp 365 (460)
T COG5170 332 YENDAIFDKFEISFSGDDKHVLS--GSYSNNFGIYP 365 (460)
T ss_pred hhccceeeeEEEEecCCcccccc--cccccceeeec
Confidence 1245778888777776 33444444443
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00011 Score=80.64 Aligned_cols=183 Identities=19% Similarity=0.254 Sum_probs=132.8
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEE
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALL 414 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~ 414 (609)
.+.++|++++ +++|+.|+.+|.|++++.+.. . .+...|... .-.|.++++|+.||.|.|-.+.+.+ ....+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~-~~~~~ 109 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDD-EITQY 109 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc----ccCCceEEEecCCCcEEEeeccCCc-cceeE
Confidence 3566777775 579999999999999998643 3 444445544 4468999999999999999888764 33333
Q ss_pred ccCCCCeEEEEEccC-----CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC
Q psy4876 415 QNHTQEVCGLKWSPD-----GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA 489 (609)
Q Consensus 415 ~~h~~~V~~l~~spd-----g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~ 489 (609)
. ...++.+++++|+ .+.+++||.-| +.++.-+-... ..-..+....++|.++.|.. +++|.+ .
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn----k~~v~l~~~eG~I~~i~W~g---~lIAWa---n 177 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN----KDSVVLSEGEGPIHSIKWRG---NLIAWA---N 177 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC----ccceeeecCccceEEEEecC---cEEEEe---c
Confidence 3 5578999999997 56799999888 77775432211 11124556788999999964 678876 5
Q ss_pred CCeEEEEECCCCceeEEEcCCC-------CeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q psy4876 490 DRHIYFWNVSSGACLDSIDTKS-------QVCALLWNSDYKELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 490 Dg~I~iwd~~t~~~~~~~~~~~-------~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~ 542 (609)
|--|+|||+.+++.+..+.... -...+.|.++.+.++ | ...+|.|..++
T Consensus 178 d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI---G-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI---G-WGDSVKICSIK 233 (846)
T ss_pred CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE---e-cCCeEEEEEEe
Confidence 7789999999998887776432 346788888877665 3 45678887776
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00029 Score=76.43 Aligned_cols=278 Identities=16% Similarity=0.219 Sum_probs=159.3
Q ss_pred ceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 269 DYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 269 ~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
..+++|++-+.+-+..|+.-|.||+|+-.. +.... ...+ ..+.+..+..+++.
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~-------------------------~~~~~-~~~~~~~~~~~~~~vs~~e 88 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHT-------------------------GEMRK-LKNEGATGITCVRSVSSVE 88 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCc-------------------------hhhhc-ccccCccceEEEEEecchh
Confidence 345666666555577788889999999876 33322 2222 45667778889999
Q ss_pred CEEEEEeCCCeEEEEeCCCCee-----EEEe-cCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCC---eeEEEEcc
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKK-----CRTM-DGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRD---HKVALLQN 416 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~-----~~~l-~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~---~~~~~~~~ 416 (609)
.++|+|+..|.|.|+-++.+.. +... ..|...|++++| |+..+++|...|.|....++... ...+.+..
T Consensus 89 ~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~ 168 (726)
T KOG3621|consen 89 YLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILS 168 (726)
T ss_pred HhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeec
Confidence 9999999999999998876421 1111 237899999999 68899999999999998887621 12233334
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCC----CCcEEEEEeccCCCe
Q psy4876 417 HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW----SPNVLASGGGTADRH 492 (609)
Q Consensus 417 h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~----~~~llasggGs~Dg~ 492 (609)
..++|..|.... +.+|++... . ..+++.+.+.. +.+.+-....-.-...+|-|. .+-.|+++ ---
T Consensus 169 ~ds~IVQlD~~q-~~LLVStl~-r-~~Lc~tE~eti----~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca----RPG 237 (726)
T KOG3621|consen 169 EDSEIVQLDYLQ-SYLLVSTLT-R-CILCQTEAETI----TQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA----RPG 237 (726)
T ss_pred cCcceEEeeccc-ceehHhhhh-h-hheeecchhHH----HHhcCCCcCCccccceEEeeccccCCCceEEEe----cCC
Confidence 556777777653 333433332 2 33455554321 111111101101123344442 23344443 344
Q ss_pred EEEEECC-CCceeEEEcCC--------------C----------------CeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 493 IYFWNVS-SGACLDSIDTK--------------S----------------QVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 493 I~iwd~~-t~~~~~~~~~~--------------~----------------~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
.|+|..+ .|+.+.+.... + ....+.+-..+..|+. .+-.|+|+|.
T Consensus 238 ~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~----te~Giyv~d~ 313 (726)
T KOG3621|consen 238 LRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAW----TEVGIYVFDS 313 (726)
T ss_pred CceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEe----ecceEEEEEe
Confidence 6778765 45554443211 0 0111111112222222 2344888887
Q ss_pred CCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 542 PSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 542 ~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
.+...+.-.. -...|.+++- .|+-|+.--.|+.+++..+.......
T Consensus 314 ~~~~v~l~se-~~~DI~dVs~--~~neiFvL~~d~~l~~~sv~s~qr~l 359 (726)
T KOG3621|consen 314 NNSQVYLWSE-GGHDILDVSH--CGNEIFVLNLDRGLKVESVASRQRKL 359 (726)
T ss_pred ccceEEEeec-CCCceeEEee--cCceEEEEecCCceeEEEeehhHHHH
Confidence 7665554332 2345666654 56667777788888888888766543
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.3e-05 Score=82.01 Aligned_cols=209 Identities=13% Similarity=0.057 Sum_probs=146.8
Q ss_pred CCCceEEEEe-cCCEEEEEecCCeEEEEEcCC--CCeeEEEEccCCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCC
Q psy4876 376 HDVRVGALAW-NTYILSSGSRCGNIVHHDVRS--RDHKVALLQNHTQEVCGLKWSPDGRYLASGGN-DNLLNIWSGVPGQ 451 (609)
Q Consensus 376 h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~--~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~-Dg~I~iwd~~~~~ 451 (609)
|...|+.+.. -.+++.+++.||.++.|--.. +-..+..+..|-..|.+++.+-+|.++.+++. |..++++|+.+-.
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence 6677777766 468999999999999997653 22345566788899999999999999999888 9999999998753
Q ss_pred CCCCccceEeecCCcccEEEEEEcCCC-CcEEEEEeccCCCeEEEEECCCCceeEE-E--cCCCCeEEEEEcCCCCeEEE
Q psy4876 452 HTFSTQPIHSLSRHQAAVKAIAWCPWS-PNVLASGGGTADRHIYFWNVSSGACLDS-I--DTKSQVCALLWNSDYKELVS 527 (609)
Q Consensus 452 ~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~llasggGs~Dg~I~iwd~~t~~~~~~-~--~~~~~v~sl~~s~~g~~l~~ 527 (609)
-. ....+..-.+.+..+ .++.. -.+++++. ..++.+.++|-....|... + -+.++|..+.+.+.+..+++
T Consensus 88 mi----nmiKL~~lPg~a~wv-~skGd~~s~IAVs~-~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 88 MI----NMIKLVDLPGFAEWV-TSKGDKISLIAVSL-FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred hh----hhcccccCCCceEEe-cCCCCeeeeEEeec-ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence 11 111222222222221 22221 12444443 4789999999876553322 2 24469999999999999888
Q ss_pred EEecCCCeEEEEECCC------CceEEE---------EeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhh
Q psy4876 528 AHGFAQNQLIIWKYPS------LVKVAE---------LHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKK 592 (609)
Q Consensus 528 ~sG~~dg~I~Iwd~~~------~~~~~~---------l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~ 592 (609)
+...|.|.-|..+. .+.... +........++.|+|+|..+.+-+.|..|+++++.+++..+..
T Consensus 162 --iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 162 --IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred --ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 44679999998762 111111 1223356789999999999999999999999999998876544
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=4e-05 Score=83.89 Aligned_cols=261 Identities=15% Similarity=0.245 Sum_probs=152.9
Q ss_pred EEecCCC-eEEEEc-----CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 275 IDWSHFN-VLAVAL-----GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 275 l~wsp~~-lla~s~-----dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
.+|+|.. ++|++. +|+|-||- ++ |.... .+.-.-.+++++|+|..-
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dt-------------------------GEPqr--~Vt~P~hatSLCWHpe~~ 72 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DT-------------------------GEPQR--DVTYPVHATSLCWHPEEF 72 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cC-------------------------CCCCc--ccccceehhhhccChHHH
Confidence 6799975 666543 68888884 33 33222 222234467899999999
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEE--EccCC--CC--
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVAL--LQNHT--QE-- 420 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~--~~~h~--~~-- 420 (609)
.|+.|-.-|.+.+|...+.+.......|..+|..+.| +|..|+++..-|.+.+|.....+ .++. +-.|. ..
T Consensus 73 vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g-~~q~~~~~~hel~~~lt 151 (1416)
T KOG3617|consen 73 VLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG-EIQTSNIMQHELNDQLT 151 (1416)
T ss_pred HHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc-ccccchhhhhHhhceee
Confidence 9999999999999999887777777789999999999 58999999999999999887543 2222 22232 22
Q ss_pred eEEEEEccCCCE------EEEEeCCCcEE-EEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeE
Q psy4876 421 VCGLKWSPDGRY------LASGGNDNLLN-IWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHI 493 (609)
Q Consensus 421 V~~l~~spdg~~------lasgs~Dg~I~-iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I 493 (609)
.+|...++++.- .++.+.+.-+- .++.+.. ...... .|.+ .|+|-.+++++ .+|+|
T Consensus 152 l~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~------~a~rs~-~ksg-------v~~g~~F~~~~---~~GtV 214 (1416)
T KOG3617|consen 152 LWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKES------LAERSD-EKSG-------VPKGTEFLFAG---KSGTV 214 (1416)
T ss_pred EEEEecCCChHHhhhhhhhhccCchhhhcccccCccc------hhhccc-cccC-------CCCCcEEEEEc---CCceE
Confidence 344455666431 34444444332 3322211 000111 1111 34554455554 78999
Q ss_pred EEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC-CCC---------------ce---------EE
Q psy4876 494 YFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKY-PSL---------------VK---------VA 548 (609)
Q Consensus 494 ~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~-~~~---------------~~---------~~ 548 (609)
+..|- .|.+......++.| .+.|.+.-.-+++.. .+-.+.++-. .+| .. -.
T Consensus 215 yyvdq-~g~~~~V~k~dS~v-QmLf~~~~eai~~i~--e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssG 290 (1416)
T KOG3617|consen 215 YYVDQ-NGRQRTVHKLDSEV-QMLFMGYCEAISIII--EFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSG 290 (1416)
T ss_pred EEEcC-CCcEEEEEEccchH-HHHHhcccceEEEEe--eeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccc
Confidence 88874 45555554444331 222333222222211 1222222211 000 00 00
Q ss_pred EEe-------CCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 549 ELH-------GHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 549 ~l~-------~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
.+. .....++|++++..+..|..|...|.+.+|.-.+
T Consensus 291 vLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~ 334 (1416)
T KOG3617|consen 291 VLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVN 334 (1416)
T ss_pred cccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecC
Confidence 010 1235799999999999999999999999996443
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00085 Score=66.40 Aligned_cols=198 Identities=11% Similarity=0.134 Sum_probs=116.1
Q ss_pred CCCeEEEEEccCC-CEEEEEeCCCeEEEEeCCCCeeEEEecCC-CCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe-
Q psy4876 335 NENVCSVAWIQEG-YMLGVGTSLGTVQLWDVSAKKKCRTMDGH-DVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDH- 409 (609)
Q Consensus 335 ~~~V~~v~~spdg-~~Lasgs~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~- 409 (609)
...+..++|.|+. .++++....+.|..++.+ |+.++.+.-. .+..-.|++ ++.++++.-+++.+.++++.....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 4559999999985 566667777888888874 7888777543 356788888 345555555689999998843221
Q ss_pred ----eEEEEc-----cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccc-----eEeecCCcccEEEEEEc
Q psy4876 410 ----KVALLQ-----NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQP-----IHSLSRHQAAVKAIAWC 475 (609)
Q Consensus 410 ----~~~~~~-----~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~-----~~~~~~h~~~V~~l~~s 475 (609)
....+. .+...+-+|+|++.++.|+++-+..-..||.+........... ..........+.+++++
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD 179 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence 111111 3456789999999888777777776666666653100000000 00011234457899999
Q ss_pred CCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC----------CCeEEEEEcCCCCeEEEEEecCCCeEEEE
Q psy4876 476 PWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK----------SQVCALLWNSDYKELVSAHGFAQNQLIIW 539 (609)
Q Consensus 476 p~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~----------~~v~sl~~s~~g~~l~~~sG~~dg~I~Iw 539 (609)
|...++++.. ..++.|..+| .+|+.+..+... .+.-.|+|.++|+..++ + +-+..++|
T Consensus 180 p~t~~lliLS--~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv--s-EpNlfy~f 247 (248)
T PF06977_consen 180 PRTGHLLILS--DESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV--S-EPNLFYRF 247 (248)
T ss_dssp TTTTEEEEEE--TTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE--E-TTTEEEEE
T ss_pred CCCCeEEEEE--CCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE--c-CCceEEEe
Confidence 9988888876 3889999999 678877766432 27899999999977666 2 56665554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.7e-06 Score=93.04 Aligned_cols=194 Identities=16% Similarity=0.222 Sum_probs=141.6
Q ss_pred eeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCC--cEE
Q psy4876 368 KKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDN--LLN 443 (609)
Q Consensus 368 ~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg--~I~ 443 (609)
+..+++..|....+|++|. .+.|+.|+..|.|+++++.++. .......|.+.|+.+.-+.||..+++.+.-. ...
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-ccccccccccccccccccCCcceeeeeccccCchHH
Confidence 4456777888999999994 5899999999999999999984 6777889999999999999999877655432 478
Q ss_pred EEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC-----CCCeEEEEE
Q psy4876 444 IWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT-----KSQVCALLW 518 (609)
Q Consensus 444 iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~-----~~~v~sl~~ 518 (609)
+|++... ..+.+.+.+ -.++.|+.....-+ .| +......+||+.++..+.++-. ...-....|
T Consensus 1171 LW~~~s~-----~~~~Hsf~e----d~~vkFsn~~q~r~-~g--t~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1171 LWDASST-----GGPRHSFDE----DKAVKFSNSLQFRA-LG--TEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred Hhccccc-----cCccccccc----cceeehhhhHHHHH-hc--ccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence 9998753 256666654 35777876543222 22 3567889999999987766321 123467789
Q ss_pred cCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 519 NSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 519 s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
+|+..+++- || .+||++..+.+..|...+.. ..-.|||.|.-++.-+. |||+.+-.
T Consensus 1239 sP~D~LIln-----dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~ 1294 (1516)
T KOG1832|consen 1239 SPCDTLILN-----DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFK 1294 (1516)
T ss_pred CCCcceEee-----Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHH
Confidence 999988774 44 47999888777766544322 23468999998887664 78876543
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.2e-05 Score=81.95 Aligned_cols=182 Identities=14% Similarity=0.221 Sum_probs=129.0
Q ss_pred CCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCc
Q psy4876 377 DVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFST 456 (609)
Q Consensus 377 ~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~ 456 (609)
...++|++++++.|+-|+.+|.|++++.... . .....|... ..+|.++++|+.||.|.|-.+.+.
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~--~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~------ 103 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGN--P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTD------ 103 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCc--c-ccccccccc------ccCCceEEEecCCCcEEEeeccCC------
Confidence 3567778888999999999999999998753 2 344445443 668999999999999999988877
Q ss_pred cceEeecCCcccEEEEEEcCC----CCcEEEEEeccCCCeEEEEECC---CCceeEEEcCCCCeEEEEEcCCCCeEEEEE
Q psy4876 457 QPIHSLSRHQAAVKAIAWCPW----SPNVLASGGGTADRHIYFWNVS---SGACLDSIDTKSQVCALLWNSDYKELVSAH 529 (609)
Q Consensus 457 ~~~~~~~~h~~~V~~l~~sp~----~~~llasggGs~Dg~I~iwd~~---t~~~~~~~~~~~~v~sl~~s~~g~~l~~~s 529 (609)
+...++. -..++.+++++|+ ....+++|| .-| +.++.-. ....+..-...+.|.++.|. |.+++.+
T Consensus 104 ~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG--~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWa- 176 (846)
T KOG2066|consen 104 DEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGG--MAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWA- 176 (846)
T ss_pred ccceeEe-cCCcceeEEeccchhhhhhhheeecC--cce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEe-
Confidence 3444443 4568999999998 334567765 455 7776543 22223233456799999995 5677775
Q ss_pred ecCCCeEEEEECCCCceEEEEeCCCCC------EEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 530 GFAQNQLIIWKYPSLVKVAELHGHSAR------VLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 530 G~~dg~I~Iwd~~~~~~~~~l~~h~~~------V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
.|-.|+|||..+...+..+...... -..+.|.++.+++ .| ..-+|+|..+.
T Consensus 177 --nd~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-IG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 177 --NDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-IG-WGDSVKICSIK 233 (846)
T ss_pred --cCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE-Ee-cCCeEEEEEEe
Confidence 4778999999999888877543232 3467787665544 33 33479999888
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00096 Score=76.48 Aligned_cols=209 Identities=14% Similarity=0.162 Sum_probs=133.2
Q ss_pred CCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC----C
Q psy4876 376 HDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGV----P 449 (609)
Q Consensus 376 h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~----~ 449 (609)
.+..|.++.| ++.-++.+..+|.|.+.|..+.. ......-...|.+++|+||+++++..+.+++|.+-+-. .
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 3468889998 67888899999999999888763 33333456789999999999999999888877665421 0
Q ss_pred CCCC-----------C--CccceEeecCC---------------------cccEEEEEEcCCCCcEEEEEe--ccCCCeE
Q psy4876 450 GQHT-----------F--STQPIHSLSRH---------------------QAAVKAIAWCPWSPNVLASGG--GTADRHI 493 (609)
Q Consensus 450 ~~~~-----------~--~~~~~~~~~~h---------------------~~~V~~l~~sp~~~~llasgg--Gs~Dg~I 493 (609)
.+.. . -.+.-..+.+. ...-..|+|--||..+.++.- .+..+.|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 0000 0 00000011110 011235899999865554321 1223899
Q ss_pred EEEECCCCceeEEEcC-CCCeEEEEEcCCCCeEEEEEe-cCCCeEEEEECCC---CceEEEEeCCCCCEEEEEEeCCCCE
Q psy4876 494 YFWNVSSGACLDSIDT-KSQVCALLWNSDYKELVSAHG-FAQNQLIIWKYPS---LVKVAELHGHSARVLNLAMSPDETT 568 (609)
Q Consensus 494 ~iwd~~t~~~~~~~~~-~~~v~sl~~s~~g~~l~~~sG-~~dg~I~Iwd~~~---~~~~~~l~~h~~~V~~l~~spdg~~ 568 (609)
+|||-+ |..-..-.. ...-.+++|-|.|..+++.-. ..++.|.+|.-.. ++-...+......|..++|+.++..
T Consensus 225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdi 303 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDI 303 (1265)
T ss_pred EEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCc
Confidence 999987 443332222 235578999999999987632 3456788887432 2222222333445999999999999
Q ss_pred EEE---EECCCCEEEEEcCCCc
Q psy4876 569 VLS---AGADETLRLWKIFEKV 587 (609)
Q Consensus 569 L~s---~s~Dg~I~iWdl~~~~ 587 (609)
|++ ......|++|-+.+-.
T Consensus 304 LAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 304 LAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eeeeecccccceEEEEEecCeE
Confidence 987 4445559999887644
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00056 Score=75.67 Aligned_cols=202 Identities=17% Similarity=0.167 Sum_probs=135.1
Q ss_pred ceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCC-eEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCCC
Q psy4876 379 RVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQE-VCGLKWSPDGRYLASGGNDN-----LLNIWSGVPGQH 452 (609)
Q Consensus 379 ~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~-V~~l~~spdg~~lasgs~Dg-----~I~iwd~~~~~~ 452 (609)
.+.|+.-++..++.|+.+|.|.+.+-.- ..+..++.+... |..+....+..+|++.+.|+ .|+|||++..+.
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~--~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSF--QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccc--eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 6777777789999999999998887553 345667777777 44444333446788877765 489999987643
Q ss_pred CCCccce--EeecC-----CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC----CC-ceeEEEcCCCCeEEEEEcC
Q psy4876 453 TFSTQPI--HSLSR-----HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS----SG-ACLDSIDTKSQVCALLWNS 520 (609)
Q Consensus 453 ~~~~~~~--~~~~~-----h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~----t~-~~~~~~~~~~~v~sl~~s~ 520 (609)
....+++ +.+.. ...++.+++.+.+- ..+|+| -.+|.|..+.-+ .| +.........+|+.+++..
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~G--f~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCG--FTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEE--ecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence 3223344 22222 34578889998874 566665 589999988532 11 2223334567999999999
Q ss_pred CCCeEEEEEecCCCeEEEEECCCCc-eEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 521 DYKELVSAHGFAQNQLIIWKYPSLV-KVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 521 ~g~~l~~~sG~~dg~I~Iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
+++.++.+. ....|.+|.+.... ....+..|...+.|..|++....+++|+ +..|.+|+..+..+
T Consensus 182 d~~s~lFv~--Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 182 DGKSVLFVA--TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGP 247 (933)
T ss_pred CCceeEEEE--ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcce
Confidence 998843332 46889999987444 2445677888899999987655455443 45788888775443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0014 Score=70.54 Aligned_cols=228 Identities=14% Similarity=0.124 Sum_probs=126.0
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEE-EcCCCCeeE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHH-DVRSRDHKV 411 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iw-d~~~~~~~~ 411 (609)
.......++++|+|+++++ +.||...|+.....+.... +....+.| ..+.+++-...+.|.++ ++... ..
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~--~~ 102 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNE--VV 102 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE---TT
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCccEEEEECCCeEEEEEcCccc--cc
Confidence 4566889999999999998 5568888888554443332 22345667 34667777778889996 44321 21
Q ss_pred EEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 412 ALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
..+... ..+..|-. |.+|+..+.+ .|.+||..++ +.+..+... +|..+.|++++..+.+.+ +.
T Consensus 103 k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~------~~i~~i~v~--~vk~V~Ws~~g~~val~t----~~ 165 (443)
T PF04053_consen 103 KSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETG------KLIRRIDVS--AVKYVIWSDDGELVALVT----KD 165 (443)
T ss_dssp -----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--------EEEEESS---E-EEEEE-TTSSEEEEE-----S-
T ss_pred eEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHc------ceeeEEecC--CCcEEEEECCCCEEEEEe----CC
Confidence 222211 12333322 8888877754 8999999988 777777633 489999999986655553 66
Q ss_pred eEEEEECCCC-----------ceeEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEE
Q psy4876 492 HIYFWNVSSG-----------ACLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLN 559 (609)
Q Consensus 492 ~I~iwd~~t~-----------~~~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~ 559 (609)
.+.|++.... .....+.. ...|.+.+|..+ .++..+ .+.|+- +..|+. ..+..-..++.=
T Consensus 166 ~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT---~~~lkY--l~~Ge~-~~i~~ld~~~yl 237 (443)
T PF04053_consen 166 SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT---SNHLKY--LVNGET-GIIAHLDKPLYL 237 (443)
T ss_dssp SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE----TTEEEE--EETTEE-EEEEE-SS--EE
T ss_pred eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc---CCeEEE--EEcCCc-ceEEEcCCceEE
Confidence 7888776543 02333332 678999999887 444332 336665 333332 222222456777
Q ss_pred EEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 560 LAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 560 l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
+.+.++...|+....|+.|..+.+......-+...
T Consensus 238 lgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~av 272 (443)
T PF04053_consen 238 LGYLPKENRLYLIDRDGNVISYELDLSELEFKTAV 272 (443)
T ss_dssp EEEETTTTEEEEE-TT--EEEEE--HHHHHHHHHH
T ss_pred EEEEccCCEEEEEECCCCEEEEEECHHHHHHHHHH
Confidence 78888888999999999999998877665555444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.5e-06 Score=90.80 Aligned_cols=242 Identities=17% Similarity=0.213 Sum_probs=158.6
Q ss_pred CCCCeEEEEEccCC--CEEEEEeCCCeEEEEeCCCCe--eEEEecCCCCceEEEEec---CCEEEEEe----cCCeEEEE
Q psy4876 334 GNENVCSVAWIQEG--YMLGVGTSLGTVQLWDVSAKK--KCRTMDGHDVRVGALAWN---TYILSSGS----RCGNIVHH 402 (609)
Q Consensus 334 h~~~V~~v~~spdg--~~Lasgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~~---~~~L~sgs----~dg~I~iw 402 (609)
....+.|+++.-+. ..+++|..+|.|.+-.+.... ......+|...+++++|+ .+.|++|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 44678888887654 578899999999998876432 234556788999999995 46777774 35679999
Q ss_pred EcCCCCe---eEEEEc-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC
Q psy4876 403 DVRSRDH---KVALLQ-NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS 478 (609)
Q Consensus 403 d~~~~~~---~~~~~~-~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 478 (609)
|+.+.-. .-..+. +......+++|..+.+++.+|.....|.++|++.. ........+..+..+...|..
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs-------~~~~~svnTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS-------LDSVSSVNTKYVQGITVDPFS 207 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh-------hhhhhhhhhhhcccceecCCC
Confidence 9987511 111121 23345668899999999999999999999999853 122222234467788889977
Q ss_pred CcEEEEEeccCCCeEEEEEC-CCC-ceeEEEcC-----CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC-------
Q psy4876 479 PNVLASGGGTADRHIYFWNV-SSG-ACLDSIDT-----KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL------- 544 (609)
Q Consensus 479 ~~llasggGs~Dg~I~iwd~-~t~-~~~~~~~~-----~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~------- 544 (609)
...+++. .|+.|.+||. .+- .++..+.. ..++..++|+|...-+++....+.++|+++|+..-
T Consensus 208 ~nY~cs~---~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~n 284 (783)
T KOG1008|consen 208 PNYFCSN---SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSAN 284 (783)
T ss_pred CCceecc---ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccccc
Confidence 7788774 6999999994 322 22222222 23699999999876655554557888999987421
Q ss_pred -ceEEEEe-----CCC---CCEEEEEEeCCC--CEEEEEECCCCEEEEEcCC
Q psy4876 545 -VKVAELH-----GHS---ARVLNLAMSPDE--TTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 545 -~~~~~l~-----~h~---~~V~~l~~spdg--~~L~s~s~Dg~I~iWdl~~ 585 (609)
....... .|. ..|.+..||+.. ...+++...-++.-+++..
T Consensus 285 n~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e 336 (783)
T KOG1008|consen 285 NSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE 336 (783)
T ss_pred ccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccchh
Confidence 1111111 122 467778888754 3444555555555555544
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00031 Score=71.42 Aligned_cols=232 Identities=13% Similarity=0.105 Sum_probs=129.7
Q ss_pred eeEEEEEecCC--Ce-EEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHF--NV-LAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~--~l-la~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spd 346 (609)
..|..|++||. |+ ..++.+..|.|.|+++ ........ ....+++++|.-|
T Consensus 194 ~~IrdlafSp~~~GLl~~asl~nkiki~dlet-------------------------~~~vssy~--a~~~~wSC~wDld 246 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-------------------------SCVVSSYI--AYNQIWSCCWDLD 246 (463)
T ss_pred hhhhhhccCccccceeeeeccCceEEEEeccc-------------------------ceeeehee--ccCCceeeeeccC
Confidence 34778999996 44 4588899999999998 33333222 2388999999987
Q ss_pred C-CEEEEEeCCCeEEEEeCCCCe-eEEEecC--CCCceEEEEe--------cCCEEEEEecCCeEEEEEcCCCCe-eEEE
Q psy4876 347 G-YMLGVGTSLGTVQLWDVSAKK-KCRTMDG--HDVRVGALAW--------NTYILSSGSRCGNIVHHDVRSRDH-KVAL 413 (609)
Q Consensus 347 g-~~Lasgs~dg~I~iwd~~~~~-~~~~l~~--h~~~V~~l~~--------~~~~L~sgs~dg~I~iwd~~~~~~-~~~~ 413 (609)
. ++|+.|..+|.|.|||+...+ .+..+.+ ...+|..++. .+.+|+....+ +..|.+.-... ....
T Consensus 247 e~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~v 324 (463)
T KOG1645|consen 247 ERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCV 324 (463)
T ss_pred CcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcc
Confidence 6 788899999999999997543 2222222 2234444433 23444444332 44555542211 1111
Q ss_pred Ec-cCCCCeEEEEEccCCCEEEEEeCCC-----------------cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEc
Q psy4876 414 LQ-NHTQEVCGLKWSPDGRYLASGGNDN-----------------LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWC 475 (609)
Q Consensus 414 ~~-~h~~~V~~l~~spdg~~lasgs~Dg-----------------~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 475 (609)
+. +..+.+.++..++..+.++.....+ --.||-.+.+.- ......+ +.. .++.-.
T Consensus 325 lele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~---Gs~~~kl--~t~--~ai~~~ 397 (463)
T KOG1645|consen 325 LELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF---GSKQTKL--STT--QAIRAV 397 (463)
T ss_pred cccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc---CCccccc--ccc--cceecc
Confidence 11 1233444555555334433322210 012222221100 0000000 110 112123
Q ss_pred CCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCC--CCeEEEEEecCCCeEEEEECC
Q psy4876 476 PWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSD--YKELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 476 p~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~--g~~l~~~sG~~dg~I~Iwd~~ 542 (609)
++. ++++.-+ ...+.+.+||..+++.++.+....+|..++...- +.+|++. .|..++||..+
T Consensus 398 ~~n-n~iv~~g-d~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~L---Td~~v~Iyk~e 461 (463)
T KOG1645|consen 398 EDN-NYIVVVG-DSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALL---TDDRVHIYKNE 461 (463)
T ss_pred ccc-cEEEEec-CCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhe---ecceEEEEecC
Confidence 334 4444332 4789999999999999999999888888887643 4466654 48889988754
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00015 Score=77.43 Aligned_cols=124 Identities=19% Similarity=0.213 Sum_probs=87.9
Q ss_pred cceeeeeeecCCCCeEEEEEccCC-CEEEEE----eCCCe----EEEEeCCCCeeEEE---ecCCCCceEEEEec--CCE
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQEG-YMLGVG----TSLGT----VQLWDVSAKKKCRT---MDGHDVRVGALAWN--TYI 389 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~spdg-~~Lasg----s~dg~----I~iwd~~~~~~~~~---l~~h~~~V~~l~~~--~~~ 389 (609)
++.+.+..+..+....++.|+-.. ..+.+. +.+|. -.+|++..++..+. --.....|.+.+++ ...
T Consensus 194 ~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k 273 (545)
T PF11768_consen 194 GKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK 273 (545)
T ss_pred CcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccce
Confidence 456666666655666788888743 444442 33443 35677765432211 11467788999995 689
Q ss_pred EEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q psy4876 390 LSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPG 450 (609)
Q Consensus 390 L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~ 450 (609)
|+.|+.||.|.+||...+ +.......-.++.++|+|+|.+|++|+.-|.+.+||+.-.
T Consensus 274 LvlGC~DgSiiLyD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 274 LVLGCEDGSIILYDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEecCCeEEEEEcCCC---eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 999999999999999865 2223344566788999999999999999999999998754
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0034 Score=64.01 Aligned_cols=248 Identities=13% Similarity=0.145 Sum_probs=136.0
Q ss_pred CCeEEEEEccCCCEEEEEe----------CCCeEEEEeCCCCeeEEEecCCCC-ceE--------EEEecCCEEEEEe--
Q psy4876 336 ENVCSVAWIQEGYMLGVGT----------SLGTVQLWDVSAKKKCRTMDGHDV-RVG--------ALAWNTYILSSGS-- 394 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs----------~dg~I~iwd~~~~~~~~~l~~h~~-~V~--------~l~~~~~~L~sgs-- 394 (609)
+..-.+..+|+++.++++. ..-.|.+||..+-.....+.--.. +.. .+.-++++++...
T Consensus 36 g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T 115 (342)
T PF06433_consen 36 GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT 115 (342)
T ss_dssp ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES
T ss_pred ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccC
Confidence 4445577899999888743 334699999999877665442221 221 2222444444432
Q ss_pred cCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccE-EEE
Q psy4876 395 RCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAV-KAI 472 (609)
Q Consensus 395 ~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V-~~l 472 (609)
-.-.|.|.|+..+ ..+..+.. .+ |.+.+ | ..+-|.+-|.||.+.-..+....... .+.-..+.....++ ..-
T Consensus 116 Pa~SVtVVDl~~~-kvv~ei~~-PG--C~~iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~ 189 (342)
T PF06433_consen 116 PATSVTVVDLAAK-KVVGEIDT-PG--CWLIY-PSGNRGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHP 189 (342)
T ss_dssp SSEEEEEEETTTT-EEEEEEEG-TS--EEEEE-EEETTEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--
T ss_pred CCCeEEEEECCCC-ceeeeecC-CC--EEEEE-ecCCCceEEEecCCceEEEEECCCCCEe-EeeccccCCCCccccccc
Confidence 2234566666654 23333321 11 22222 3 22457788889999998888432111 01111121112222 233
Q ss_pred EEcCCCCcEEEEEeccCCCeEEEEECCCCcee--EEEcC-----------CCCeEEEEEcCCCCeEEEEE-ecCCC----
Q psy4876 473 AWCPWSPNVLASGGGTADRHIYFWNVSSGACL--DSIDT-----------KSQVCALLWNSDYKELVSAH-GFAQN---- 534 (609)
Q Consensus 473 ~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~--~~~~~-----------~~~v~sl~~s~~g~~l~~~s-G~~dg---- 534 (609)
++...+..++.. +..|.|+-.|+...... ..+.. .+...-+++++..+.|++.. ...++
T Consensus 190 ~~~~~~~~~~F~---Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKd 266 (342)
T PF06433_consen 190 AYSRDGGRLYFV---SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKD 266 (342)
T ss_dssp EEETTTTEEEEE---BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS
T ss_pred ceECCCCeEEEE---ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccC
Confidence 344444444443 47999999988765422 22221 12344577887666665542 21222
Q ss_pred ---eEEEEECCCCceEEEEeCCCCCEEEEEEeCCCC-EEEEEE-CCCCEEEEEcCCCccchhhh
Q psy4876 535 ---QLIIWKYPSLVKVAELHGHSARVLNLAMSPDET-TVLSAG-ADETLRLWKIFEKVKSKKKE 593 (609)
Q Consensus 535 ---~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~L~s~s-~Dg~I~iWdl~~~~~~~k~~ 593 (609)
.|.+||..+++.+..+.. ...+.+|+.+.|.+ +|++.+ .++.|.+||..+++..++.+
T Consensus 267 pgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 267 PGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp -EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 477889999999998863 24578999998776 666554 57899999999987665543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0011 Score=71.08 Aligned_cols=187 Identities=17% Similarity=0.229 Sum_probs=119.4
Q ss_pred CCCCeEEEEEccCCCEEEEE---eCC-CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCC-EEEEEecCCe--EEEEEc
Q psy4876 334 GNENVCSVAWIQEGYMLGVG---TSL-GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTY-ILSSGSRCGN--IVHHDV 404 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasg---s~d-g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~-~L~sgs~dg~--I~iwd~ 404 (609)
....+..-+|+|++..++.. ... ..+.++|+.+++....+. ..+.-...+| +|. ++++...||. |++.|+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 34567778999999665543 222 469999999887655554 2222233345 554 5556667776 566677
Q ss_pred CCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCC-C--cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcE
Q psy4876 405 RSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGND-N--LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 405 ~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~D-g--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 481 (609)
.... ...+....+.-+.-.|+|||++++..+.. | .|.++|.+... . ..+......-..-.|+|+|..+
T Consensus 270 ~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~------~-~riT~~~~~~~~p~~SpdG~~i 340 (425)
T COG0823 270 DGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ------V-TRLTFSGGGNSNPVWSPDGDKI 340 (425)
T ss_pred CCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc------e-eEeeccCCCCcCccCCCCCCEE
Confidence 7653 33344333333467899999998887653 3 47777777652 2 3333333333377899999888
Q ss_pred EEEEeccCCCe--EEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecC
Q psy4876 482 LASGGGTADRH--IYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFA 532 (609)
Q Consensus 482 lasggGs~Dg~--I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~ 532 (609)
+.... .+|. |.+.|+.++..++.+........-.|.+++..++..++..
T Consensus 341 ~~~~~--~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 341 VFESS--SGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred EEEec--cCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence 77762 3454 7777777766566666666666778899999988876533
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.015 Score=62.47 Aligned_cols=179 Identities=15% Similarity=0.083 Sum_probs=97.5
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe------eEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCC
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK------KCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRD 408 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~------~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~ 408 (609)
.+.|.++.|+.+.. |++-..||.+++||+.... .+.........+....+.+.-++.-..++.+.+..--...
T Consensus 80 ~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~ 158 (410)
T PF04841_consen 80 SGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEP 158 (410)
T ss_pred CCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCcccc
Confidence 38999999988654 4556788999999986323 1111122223333333321223333344555444322211
Q ss_pred eeEEEEc---c-----CCC-CeE-EEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC
Q psy4876 409 HKVALLQ---N-----HTQ-EVC-GLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS 478 (609)
Q Consensus 409 ~~~~~~~---~-----h~~-~V~-~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 478 (609)
.....+. . |.. .+. ...++.+....+....++.+.+.+-... ..+ ...+++..++.+|++
T Consensus 159 ~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~---------~~i-~~~~~i~~iavSpng 228 (410)
T PF04841_consen 159 VKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF---------KQI-DSDGPIIKIAVSPNG 228 (410)
T ss_pred chhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc---------ccc-cCCCCeEEEEECCCC
Confidence 1111110 0 000 000 0234445555555555566664443221 112 234689999999999
Q ss_pred CcEEEEEeccCCCeEEEEECCCCceeEEEcCC--CCeEEEEEcCCCCeEEE
Q psy4876 479 PNVLASGGGTADRHIYFWNVSSGACLDSIDTK--SQVCALLWNSDYKELVS 527 (609)
Q Consensus 479 ~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~--~~v~sl~~s~~g~~l~~ 527 (609)
+.+.+.. .+|.+.+....-.+.+..++.. .....+.|+-+.-.++.
T Consensus 229 ~~iAl~t---~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~ 276 (410)
T PF04841_consen 229 KFIALFT---DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLS 276 (410)
T ss_pred CEEEEEE---CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEE
Confidence 7554443 6899999988777777777665 57788889877544433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0034 Score=67.62 Aligned_cols=224 Identities=13% Similarity=0.114 Sum_probs=113.6
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
+.+...|.++|++ .++++.||...|+.... .. .. ..+....++|.+.+
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~-------------------------~r--~k----~~G~g~~~vw~~~n 80 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALA-------------------------WR--NK----AFGSGLSFVWSSRN 80 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTT-------------------------TE--EE----EEEE-SEEEE-TSS
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccC-------------------------Cc--cc----ccCceeEEEEecCc
Confidence 4557789999986 88889999999998543 11 11 12445678899855
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEc
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWS 427 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 427 (609)
.+|+-..++.|.|+.--+.+....+... ..+..|-. |.+|...+.+ .|.+||+.++ ..+..+... .|..+.|+
T Consensus 81 -~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~-G~LL~~~~~~-~i~~yDw~~~-~~i~~i~v~--~vk~V~Ws 153 (443)
T PF04053_consen 81 -RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG-GNLLGVKSSD-FICFYDWETG-KLIRRIDVS--AVKYVIWS 153 (443)
T ss_dssp -EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE--SSSEEEEETT-EEEEE-TTT---EEEEESS---E-EEEEE-
T ss_pred -cEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc-CcEEEEECCC-CEEEEEhhHc-ceeeEEecC--CCcEEEEE
Confidence 4666666888999743333332233321 23444433 7777766554 8999999987 466666533 38999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCC----CCC-CCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc
Q psy4876 428 PDGRYLASGGNDNLLNIWSGVPG----QHT-FSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA 502 (609)
Q Consensus 428 pdg~~lasgs~Dg~I~iwd~~~~----~~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~ 502 (609)
++|.++|..+.+ .++|++.... ... .....+..+..-...|.+.+|..+ .++.+. ..+|+. +-.|+
T Consensus 154 ~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT----~~~lkY--l~~Ge 224 (443)
T PF04053_consen 154 DDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT----SNHLKY--LVNGE 224 (443)
T ss_dssp TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-----TTEEEE--EETTE
T ss_pred CCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc----CCeEEE--EEcCC
Confidence 999999998865 6788765421 000 000123333322567899999875 445542 237766 33344
Q ss_pred eeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 503 CLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 503 ~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
.-..-....++.-+.+.+..+.++..- .++.|..+.+
T Consensus 225 ~~~i~~ld~~~yllgy~~~~~~ly~~D--r~~~v~~~~l 261 (443)
T PF04053_consen 225 TGIIAHLDKPLYLLGYLPKENRLYLID--RDGNVISYEL 261 (443)
T ss_dssp EEEEEE-SS--EEEEEETTTTEEEEE---TT--EEEEE-
T ss_pred cceEEEcCCceEEEEEEccCCEEEEEE--CCCCEEEEEE
Confidence 322222234555555555545555432 4555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.017 Score=62.31 Aligned_cols=249 Identities=11% Similarity=0.080 Sum_probs=133.6
Q ss_pred eEEEEEccCCCEEEEEe-CCC----eEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecC-----------CeE
Q psy4876 338 VCSVAWIQEGYMLGVGT-SLG----TVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRC-----------GNI 399 (609)
Q Consensus 338 V~~v~~spdg~~Lasgs-~dg----~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~d-----------g~I 399 (609)
+..++++|+|++||.+- ..| .|+++|+.+++.+...-.. .....+.| ++..|+....+ ..|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 33678999999998763 333 5999999999776532111 12223889 44555444322 237
Q ss_pred EEEEcCCCCee-EEEEccCCC-C-eEEEEEccCCCEEEEEeCC----CcEEEEeCCCCCCCCCccceEeecCCcccEE-E
Q psy4876 400 VHHDVRSRDHK-VALLQNHTQ-E-VCGLKWSPDGRYLASGGND----NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVK-A 471 (609)
Q Consensus 400 ~iwd~~~~~~~-~~~~~~h~~-~-V~~l~~spdg~~lasgs~D----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~-~ 471 (609)
+.|.+.+.... ...+..... . ...+..++|+++|+..... ..|++.|+..+. ........+......+. .
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~--~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG--SPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT--TSS-SEEEEEESSSS-EEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC--CCcCCcEEEeCCCCceEEE
Confidence 88888776433 334443332 2 6788999999997764432 357888887641 00023333333333343 3
Q ss_pred EEEcCCCCcEEEEEeccCCCeEEEEECCCCce---eEEE-cCCCCeEEEEEcCCCCeEEEEE-ecCCCeEEEEECCCCce
Q psy4876 472 IAWCPWSPNVLASGGGTADRHIYFWNVSSGAC---LDSI-DTKSQVCALLWNSDYKELVSAH-GFAQNQLIIWKYPSLVK 546 (609)
Q Consensus 472 l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~---~~~~-~~~~~v~sl~~s~~g~~l~~~s-G~~dg~I~Iwd~~~~~~ 546 (609)
+... .+..++.+..+...+.|...++..... ...+ .....+.-..+...+.+|+... -.....|+++++..+..
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 3333 333444554444568888889887653 2233 3333333333334444555432 22234688999884444
Q ss_pred EEEEeC-CCCCEEEEEEeCCCCEE-EEEEC---CCCEEEEEcCCCccch
Q psy4876 547 VAELHG-HSARVLNLAMSPDETTV-LSAGA---DETLRLWKIFEKVKSK 590 (609)
Q Consensus 547 ~~~l~~-h~~~V~~l~~spdg~~L-~s~s~---Dg~I~iWdl~~~~~~~ 590 (609)
...+.. -.+.|..+...+++..+ ++.+. -++|..||+.+++...
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 444433 33446666666666544 33332 3678888888877543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0039 Score=68.50 Aligned_cols=221 Identities=10% Similarity=0.065 Sum_probs=127.3
Q ss_pred EEEccCCCEEEE-EeCCCeEEEEeCCCCeeEEEecCCC-CceEEEEecCCEEEEEecC----CeEEEEEcCCCCeeEEEE
Q psy4876 341 VAWIQEGYMLGV-GTSLGTVQLWDVSAKKKCRTMDGHD-VRVGALAWNTYILSSGSRC----GNIVHHDVRSRDHKVALL 414 (609)
Q Consensus 341 v~~spdg~~Las-gs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~~~~~L~sgs~d----g~I~iwd~~~~~~~~~~~ 414 (609)
+=+.+||+.+.. .-..+.+.+.|.++.+...++.... .....+..++.++++.+.+ .++..-+..... .+..+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-~~vvf 276 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-WVVVF 276 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCc-eEEEE
Confidence 345667765533 2334677888888776665554322 2233333367777766532 223333332221 11111
Q ss_pred ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEE
Q psy4876 415 QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIY 494 (609)
Q Consensus 415 ~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~ 494 (609)
.... + -++.++|++...+ ++.|.+.|..+.... ....+..+. -......+.++|||+++++++. .+.++.
T Consensus 277 ni~~--i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~-~~~v~~yIP-VGKsPHGV~vSPDGkylyVank--lS~tVS 346 (635)
T PRK02888 277 NIAR--I--EEAVKAGKFKTIG--GSKVPVVDGRKAANA-GSALTRYVP-VPKNPHGVNTSPDGKYFIANGK--LSPTVT 346 (635)
T ss_pred chHH--H--HHhhhCCCEEEEC--CCEEEEEECCccccC-CcceEEEEE-CCCCccceEECCCCCEEEEeCC--CCCcEE
Confidence 1100 0 1334578876663 678999998871000 003333333 3345678999999998888874 899999
Q ss_pred EEECCCCc------------eeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC----------CceEEEEeC
Q psy4876 495 FWNVSSGA------------CLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS----------LVKVAELHG 552 (609)
Q Consensus 495 iwd~~t~~------------~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~----------~~~~~~l~~ 552 (609)
|.|+.+.+ .+..+...-.....+|.++|....+ =+-|.+|..|++.. ...+..+.-
T Consensus 347 VIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~ayts--lf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV 424 (635)
T PRK02888 347 VIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTT--LFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDV 424 (635)
T ss_pred EEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEe--EeecceeEEEehHHHHHHhccccCCcceecccC
Confidence 99998755 3455555556778899999875544 45799999999865 233333433
Q ss_pred CCCC-----EEEEEEeCCCCEEEEEEC
Q psy4876 553 HSAR-----VLNLAMSPDETTVLSAGA 574 (609)
Q Consensus 553 h~~~-----V~~l~~spdg~~L~s~s~ 574 (609)
|-.+ ...=.-.|||++|++...
T Consensus 425 ~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 425 HYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred CCccceeeecCCCcCCCCCCEEEEccc
Confidence 3222 111123578888887643
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.012 Score=56.97 Aligned_cols=130 Identities=12% Similarity=0.045 Sum_probs=90.7
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
..+++.|+..+.+.--|..+|+.+..-. -..++.+-+. -+++++.|+..|.+++.++.++. .+..+.....-=....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs-~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGS-QIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEEECCEEEEEEccCcEEEEEecchh-heeeeeehhhhccceE
Confidence 3678889999999999999988765433 2344444333 57889999999999999999985 4444443332223345
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 426 WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 426 ~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
..+++.++..|+.|+..+..|.++. ..+.+.+-..+...+-+..|-...|+++
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~------~cVykskcgG~~f~sP~i~~g~~sly~a 153 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTY------GCVYKSKCGGGTFVSPVIAPGDGSLYAA 153 (354)
T ss_pred EcCCCceEEEecCCCcEEEeccccc------ceEEecccCCceeccceecCCCceEEEE
Confidence 6778999999999999999999987 5666665444444455566633344443
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.02 Score=63.09 Aligned_cols=184 Identities=12% Similarity=0.113 Sum_probs=107.5
Q ss_pred CCCeEEEEeCCCCeeEEEecCCCC--------------------ce-EEEEec--CCEEEEEecCC--------------
Q psy4876 355 SLGTVQLWDVSAKKKCRTMDGHDV--------------------RV-GALAWN--TYILSSGSRCG-------------- 397 (609)
Q Consensus 355 ~dg~I~iwd~~~~~~~~~l~~h~~--------------------~V-~~l~~~--~~~L~sgs~dg-------------- 397 (609)
.+|.|..+|..+|+.+-.+..... .| ...+.+ +..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 367899999999988776643211 01 012232 46777776655
Q ss_pred ----eEEEEEcCCCCeeEEEEc-c-CCC----CeEEEEEc----cCCC---EEEEEeCCCcEEEEeCCCCCCCCCccceE
Q psy4876 398 ----NIVHHDVRSRDHKVALLQ-N-HTQ----EVCGLKWS----PDGR---YLASGGNDNLLNIWSGVPGQHTFSTQPIH 460 (609)
Q Consensus 398 ----~I~iwd~~~~~~~~~~~~-~-h~~----~V~~l~~s----pdg~---~lasgs~Dg~I~iwd~~~~~~~~~~~~~~ 460 (609)
.|.-+|..+++ .+..++ . |.. ......+. -+|. .++.++.+|.++..|.+++ +.+.
T Consensus 253 ~~~~~l~Ald~~tG~-~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG------~~~W 325 (488)
T cd00216 253 LYTDSIVALDADTGK-VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG------KLIS 325 (488)
T ss_pred CceeeEEEEcCCCCC-EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC------cEee
Confidence 78999998885 444433 1 110 00001111 1343 5778888999999999999 4443
Q ss_pred eecCCcccEEEEEEcCCCCcEEEEEe---------------ccCCCeEEEEECCCCceeEEEcCC---------CCeEEE
Q psy4876 461 SLSRHQAAVKAIAWCPWSPNVLASGG---------------GTADRHIYFWNVSSGACLDSIDTK---------SQVCAL 516 (609)
Q Consensus 461 ~~~~h~~~V~~l~~sp~~~~llasgg---------------Gs~Dg~I~iwd~~t~~~~~~~~~~---------~~v~sl 516 (609)
..... ...++..| ..+++... ...++.|.-.|+.+|+.+-..... .....-
T Consensus 326 ~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~ 400 (488)
T cd00216 326 ARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGG 400 (488)
T ss_pred EeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCc
Confidence 33211 11223333 12322110 124688999999999988777654 111110
Q ss_pred EEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC
Q psy4876 517 LWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 517 ~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~ 552 (609)
...-.+..+++ |..+|.|+.+|..+++.+..++-
T Consensus 401 ~~~~~g~~v~~--g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 401 SLATAGNLVFA--GAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred ceEecCCeEEE--ECCCCeEEEEECCCCceeeEEEC
Confidence 11124456666 44799999999999999988764
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.02 Score=61.53 Aligned_cols=197 Identities=10% Similarity=0.086 Sum_probs=105.4
Q ss_pred eEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCC-----eeEEEEccCCCCeEEEEEccCCC
Q psy4876 358 TVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRD-----HKVALLQNHTQEVCGLKWSPDGR 431 (609)
Q Consensus 358 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~-----~~~~~~~~h~~~V~~l~~spdg~ 431 (609)
.|+||+.. |+.+..+.-..+.+.++.| +...|++...||.++++|+.... ..+....-....+....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G- 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG- 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC-
Confidence 48999865 5666666555589999999 46788888999999999986331 0011111111222223333355
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-------CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee
Q psy4876 432 YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-------HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504 (609)
Q Consensus 432 ~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-------h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~ 504 (609)
++.-..++.|++.+-..... ..+....... +........++.+....+... .++.+.+.+-...
T Consensus 140 -ivvLt~~~~~~~v~n~~~~~--~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~---~g~~i~~i~~~~~--- 210 (410)
T PF04841_consen 140 -IVVLTGNNRFYVVNNIDEPV--KLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLA---NGETIYIIDENSF--- 210 (410)
T ss_pred -EEEECCCCeEEEEeCccccc--hhhccccCCCcccccccccccccceEeecCcceEEEEe---cCCEEEEEEcccc---
Confidence 33333445555443222100 0000000000 100000022333332222222 3455554443221
Q ss_pred EEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC-CCCEEEEEEeCCCC
Q psy4876 505 DSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH-SARVLNLAMSPDET 567 (609)
Q Consensus 505 ~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~ 567 (609)
..+...+++..++.||+|++++..+ .+|.+.|....-.+.+.++... ......|.|.-+..
T Consensus 211 ~~i~~~~~i~~iavSpng~~iAl~t--~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 211 KQIDSDGPIIKIAVSPNGKFIALFT--DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred ccccCCCCeEEEEECCCCCEEEEEE--CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 1134456899999999999999876 6899999887666666666433 34556777765543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0084 Score=63.19 Aligned_cols=243 Identities=16% Similarity=0.193 Sum_probs=125.6
Q ss_pred EEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEE
Q psy4876 272 LNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYML 350 (609)
Q Consensus 272 v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~L 350 (609)
+....|||++ .++...++.|++++..++ .....+-++...... |...-+.+-+--+.-..+-|||||++|
T Consensus 45 ~~~~~~sP~g~~~~~v~~~nly~~~~~~~----~~~~lT~dg~~~i~n-----G~~dwvyeEEv~~~~~~~~WSpd~~~l 115 (353)
T PF00930_consen 45 LQDAKWSPDGKYIAFVRDNNLYLRDLATG----QETQLTTDGEPGIYN-----GVPDWVYEEEVFDRRSAVWWSPDSKYL 115 (353)
T ss_dssp BSEEEE-SSSTEEEEEETTEEEEESSTTS----EEEESES--TTTEEE-----SB--HHHHHHTSSSSBSEEE-TTSSEE
T ss_pred cccceeecCCCeeEEEecCceEEEECCCC----CeEEeccccceeEEc-----CccceeccccccccccceEECCCCCEE
Confidence 4458899996 888889999999998763 222222222111111 100000000001123467888888888
Q ss_pred EEEeCC-Ce-----------------------------------EEEEeCCCCeeEE--Ee---cCCCCceEEEEe--cC
Q psy4876 351 GVGTSL-GT-----------------------------------VQLWDVSAKKKCR--TM---DGHDVRVGALAW--NT 387 (609)
Q Consensus 351 asgs~d-g~-----------------------------------I~iwd~~~~~~~~--~l---~~h~~~V~~l~~--~~ 387 (609)
|....| .. +.|+|+.+++... .. ..-..-+..+.| ++
T Consensus 116 a~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~ 195 (353)
T PF00930_consen 116 AFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG 195 (353)
T ss_dssp EEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT
T ss_pred EEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC
Confidence 765432 11 2334444443211 11 123345667777 34
Q ss_pred CEEEEE--ecCC---eEEEEEcCCCCeeEEEEccCCCC---eEEEEEc-cCCC-EEEEEeCCCc--EEEEeCCCCCCCCC
Q psy4876 388 YILSSG--SRCG---NIVHHDVRSRDHKVALLQNHTQE---VCGLKWS-PDGR-YLASGGNDNL--LNIWSGVPGQHTFS 455 (609)
Q Consensus 388 ~~L~sg--s~dg---~I~iwd~~~~~~~~~~~~~h~~~---V~~l~~s-pdg~-~lasgs~Dg~--I~iwd~~~~~~~~~ 455 (609)
..|+.. .++. .+.++|..++...+......... -..+.|. +++. +|.....||- |++++...+
T Consensus 196 ~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~----- 270 (353)
T PF00930_consen 196 KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG----- 270 (353)
T ss_dssp EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS-----
T ss_pred cEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc-----
Confidence 423322 2322 35666776654332222222222 2245554 6555 4444556665 555555544
Q ss_pred ccceEeecCCcccEEE-EEEcCCCCcEEEEEecc--CCCeEEEEECCCCceeEEEcCCCCe-EEEEEcCCCCeEEEEEe
Q psy4876 456 TQPIHSLSRHQAAVKA-IAWCPWSPNVLASGGGT--ADRHIYFWNVSSGACLDSIDTKSQV-CALLWNSDYKELVSAHG 530 (609)
Q Consensus 456 ~~~~~~~~~h~~~V~~-l~~sp~~~~llasggGs--~Dg~I~iwd~~t~~~~~~~~~~~~v-~sl~~s~~g~~l~~~sG 530 (609)
....+....-.|.. +.|++++..++.++.+. ....|+.-++..+..+..+...... ..+.|+|++++++..+.
T Consensus 271 --~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 271 --KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp --EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred --ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 34566666667744 78899888888887532 2456777777734555666555444 49999999999987653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0097 Score=63.28 Aligned_cols=248 Identities=12% Similarity=0.112 Sum_probs=127.4
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCc-------------cccccccccc-cc---cceeeeee
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPL-------------VQELTSKCIQ-DN---RAIDHLMD 331 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-~~---~~~~~l~~ 331 (609)
.|..+.++++. ++++...|.|.||.+..++.... ....+. ...+...... +. ..+..+.-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN-REQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc-cCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 46788898873 66677789999988876422210 000000 0111111100 00 11334444
Q ss_pred ec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEe--cC------CCCceEEEEe-------cC---CEEEE
Q psy4876 332 LE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTM--DG------HDVRVGALAW-------NT---YILSS 392 (609)
Q Consensus 332 ~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l--~~------h~~~V~~l~~-------~~---~~L~s 392 (609)
+. ..+.|++++.|.-| ++|+|..+|.+.|.|++....+..- .. ....|+++.| ++ -.|++
T Consensus 82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 44 57999999998544 9999999999999999877766542 22 3456888888 22 47889
Q ss_pred EecCCeEEEEEcCC-C-C-ee---EEEEccCCCCeEEEE-EccC-----------------C---CEEEEEeCCCcEEEE
Q psy4876 393 GSRCGNIVHHDVRS-R-D-HK---VALLQNHTQEVCGLK-WSPD-----------------G---RYLASGGNDNLLNIW 445 (609)
Q Consensus 393 gs~dg~I~iwd~~~-~-~-~~---~~~~~~h~~~V~~l~-~spd-----------------g---~~lasgs~Dg~I~iw 445 (609)
|...|.+.+|.+.- . + .. ......+.+.|..|. ++.+ | ..+++...+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 99999999998752 1 1 11 112224566666665 3221 0 123333446789999
Q ss_pred eCCCCCCCCCccceEeecCCcccEEEEEEcC----CCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCC-----CeEEE
Q psy4876 446 SGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP----WSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKS-----QVCAL 516 (609)
Q Consensus 446 d~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp----~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~-----~v~sl 516 (609)
..-+. +..++.....-....+.+-+ .+...|++- ..+|.|++|.+..-+.+..+.... .+...
T Consensus 241 ~~~~~------k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l--~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s 312 (395)
T PF08596_consen 241 KPPKS------KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCL--FNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS 312 (395)
T ss_dssp -TT---------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEE--ETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred eCCCC------cccceeeccccccceEEEEeecccCCceEEEEE--ECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence 98876 44444443322333444421 122334433 379999999999888887776532 34456
Q ss_pred EEcCCCCeEEEE
Q psy4876 517 LWNSDYKELVSA 528 (609)
Q Consensus 517 ~~s~~g~~l~~~ 528 (609)
.++++|..++..
T Consensus 313 sis~~Gdi~~~~ 324 (395)
T PF08596_consen 313 SISRNGDIFYWT 324 (395)
T ss_dssp EE-TTS-EEEE-
T ss_pred EECCCCCEEEEe
Confidence 678888766654
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.017 Score=57.26 Aligned_cols=203 Identities=13% Similarity=0.194 Sum_probs=113.0
Q ss_pred EEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccC-CCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q psy4876 371 RTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNH-TQEVCGLKWSPDGRYLASGGNDNLLNIWS 446 (609)
Q Consensus 371 ~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg~~lasgs~Dg~I~iwd 446 (609)
+.+.+-...+..|+|+ +.++++....+.|..++.. + ..+..+.-. .+..-+|++..++.++++--.++.+.+++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G-~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G-KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-C-CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 3555666679999995 3577777788888888875 3 355554433 36688999988887777666689999999
Q ss_pred CCCCCCCCCccceEee-----cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC---CceeEEEc---------C
Q psy4876 447 GVPGQHTFSTQPIHSL-----SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS---GACLDSID---------T 509 (609)
Q Consensus 447 ~~~~~~~~~~~~~~~~-----~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t---~~~~~~~~---------~ 509 (609)
+..............+ ..+...+..|+|++.+..++++- ...-..+|.+.. ...+.... .
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceeeccccccccccce
Confidence 8543211111111112 13456789999999988888765 344444554432 22222111 1
Q ss_pred CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCC---------CCEEEEEEeCCCCEEEEEECCCCEEE
Q psy4876 510 KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHS---------ARVLNLAMSPDETTVLSAGADETLRL 580 (609)
Q Consensus 510 ~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~---------~~V~~l~~spdg~~L~s~s~Dg~I~i 580 (609)
-..+.++.++|....+++.+ .....|.++| ..|+.+..+.-.. ...-.|+|.++|.+ +..+.-+..++
T Consensus 170 ~~d~S~l~~~p~t~~lliLS-~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L-YIvsEpNlfy~ 246 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILS-DESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL-YIVSEPNLFYR 246 (248)
T ss_dssp SS---EEEEETTTTEEEEEE-TTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E-EEEETTTEEEE
T ss_pred eccccceEEcCCCCeEEEEE-CCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE-EEEcCCceEEE
Confidence 23688999999987777765 3788899999 6777666553221 24789999999964 44556665554
Q ss_pred E
Q psy4876 581 W 581 (609)
Q Consensus 581 W 581 (609)
|
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 4
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.059 Score=57.40 Aligned_cols=243 Identities=14% Similarity=0.140 Sum_probs=157.4
Q ss_pred CeEEEEEccCCCEEEEEeC-CCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCC-EEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 337 NVCSVAWIQEGYMLGVGTS-LGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTY-ILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~-~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
....+...+++..+.+... ...+.+.+................-..++. .+. .++....+..|.+.|..... ...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~-~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT-VLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccc-eee
Confidence 5667888888855544432 224555554421111111111122233444 344 55566667899999977653 333
Q ss_pred EEccCCCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC
Q psy4876 413 LLQNHTQEVCGLKWSPDGRYLASGGN---DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA 489 (609)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~lasgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~ 489 (609)
... -......++++++++.+.++.. ++.+.+.|..+. ..+........+ ..+++.|+|..++++- +.
T Consensus 111 ~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~------~~~~~~~vG~~P-~~~a~~p~g~~vyv~~--~~ 180 (381)
T COG3391 111 SIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN------KVTATIPVGNTP-TGVAVDPDGNKVYVTN--SD 180 (381)
T ss_pred Eee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC------eEEEEEecCCCc-ceEEECCCCCeEEEEe--cC
Confidence 332 2226678999999987777665 688999988877 444444433344 8999999998787775 47
Q ss_pred CCeEEEEECCCCceeE-----EEcCCCCeEEEEEcCCCCeEEEEEecC-CCeEEEEECCCCceEEE-EeCCCCCEEEEEE
Q psy4876 490 DRHIYFWNVSSGACLD-----SIDTKSQVCALLWNSDYKELVSAHGFA-QNQLIIWKYPSLVKVAE-LHGHSARVLNLAM 562 (609)
Q Consensus 490 Dg~I~iwd~~t~~~~~-----~~~~~~~v~sl~~s~~g~~l~~~sG~~-dg~I~Iwd~~~~~~~~~-l~~h~~~V~~l~~ 562 (609)
++.|.+.|........ .+........+.++++|.++++..... ++.+.+.|..++..... +..-......+.+
T Consensus 181 ~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~ 260 (381)
T COG3391 181 DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAV 260 (381)
T ss_pred CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeE
Confidence 9999999977666553 233445678899999999887764322 36899999988877665 2211114567899
Q ss_pred eCCCCEEEEEECC-CCEEEEEcCCCccch
Q psy4876 563 SPDETTVLSAGAD-ETLRLWKIFEKVKSK 590 (609)
Q Consensus 563 spdg~~L~s~s~D-g~I~iWdl~~~~~~~ 590 (609)
+|+|..+.+.... +.+.+-|..+....+
T Consensus 261 ~p~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 261 DPAGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred CCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence 9999998888444 788888877755443
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.043 Score=55.44 Aligned_cols=198 Identities=12% Similarity=0.060 Sum_probs=115.9
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEE--------------ecCCCCceEEEE----ecCCEEEEEecCC
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRT--------------MDGHDVRVGALA----WNTYILSSGSRCG 397 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~--------------l~~h~~~V~~l~----~~~~~L~sgs~dg 397 (609)
..|..+...++-+.|++-+ |+.+.++++..-..... .......+..++ ..+...++.....
T Consensus 36 ~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk 114 (275)
T PF00780_consen 36 SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK 114 (275)
T ss_pred ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence 3499999999877776554 49999999875433221 111233455555 1233333344445
Q ss_pred eEEEEEcCCCC----eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC---------
Q psy4876 398 NIVHHDVRSRD----HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR--------- 464 (609)
Q Consensus 398 ~I~iwd~~~~~----~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~--------- 464 (609)
.|.+|...... .....+. ....+.+++|. ++.|+.|..+ ...+.|+.++.. ..+.....
T Consensus 115 ~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~----~~l~~~~~~~~~~~~~~ 186 (275)
T PF00780_consen 115 KILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSP----SELLDPSDSSSSFKSRN 186 (275)
T ss_pred EEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCc----eEEeCccCCcchhhhcc
Confidence 88888776531 1333333 34778899998 5678888764 588899987632 22221111
Q ss_pred -CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeE--EEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 465 -HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLD--SIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 465 -h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~--~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
...++..+.... + .+|++ .|..-.+.|. .|+..+ .+.-...+.++++ ...++++. .++.|.||++
T Consensus 187 ~~~~~~~~~~~~~-~-e~Ll~----~~~~g~fv~~-~G~~~r~~~i~W~~~p~~~~~--~~pyli~~---~~~~iEV~~~ 254 (275)
T PF00780_consen 187 SSSKPLGIFQLSD-N-EFLLC----YDNIGVFVNK-NGEPSRKSTIQWSSAPQSVAY--SSPYLIAF---SSNSIEVRSL 254 (275)
T ss_pred cCCCceEEEEeCC-c-eEEEE----ecceEEEEcC-CCCcCcccEEEcCCchhEEEE--ECCEEEEE---CCCEEEEEEC
Confidence 122344444433 3 34443 3555555555 344333 4444456666766 34566664 3677999999
Q ss_pred CCCceEEEEeCCC
Q psy4876 542 PSLVKVAELHGHS 554 (609)
Q Consensus 542 ~~~~~~~~l~~h~ 554 (609)
.+++.+..+....
T Consensus 255 ~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 255 ETGELVQTIPLPN 267 (275)
T ss_pred cCCcEEEEEECCC
Confidence 9999988887543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.037 Score=57.48 Aligned_cols=202 Identities=13% Similarity=0.133 Sum_probs=114.0
Q ss_pred cceeeeeeecCCCCeEEEEEcc-------CCCEEEEEeC---------C-CeEEEEeCCCC----eeEEEe--cCCCCce
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQ-------EGYMLGVGTS---------L-GTVQLWDVSAK----KKCRTM--DGHDVRV 380 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~sp-------dg~~Lasgs~---------d-g~I~iwd~~~~----~~~~~l--~~h~~~V 380 (609)
........+.....+.+++... ...+|++|+. . |.|.++++... ..+..+ ....+.|
T Consensus 12 ~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V 91 (321)
T PF03178_consen 12 FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPV 91 (321)
T ss_dssp SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-E
T ss_pred CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcc
Confidence 4444444555566666665433 2478888864 2 89999999884 122222 2357889
Q ss_pred EEEEecCCEEEEEecCCeEEEEEcCCCC-eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccce
Q psy4876 381 GALAWNTYILSSGSRCGNIVHHDVRSRD-HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPI 459 (609)
Q Consensus 381 ~~l~~~~~~L~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~ 459 (609)
.+++--+..|+++. .+.|.+|++.... -...........+.++... ++++++|.....|.++..+... ..+
T Consensus 92 ~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~-----~~l 163 (321)
T PF03178_consen 92 TAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEEN-----NKL 163 (321)
T ss_dssp EEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTT-----E-E
T ss_pred eEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccC-----CEE
Confidence 99887444444443 4789999998875 2222222233366666655 5699999988888877544321 112
Q ss_pred Eee--cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC-------Cc----eeEEEcCCCCeEEE---EEcC--C
Q psy4876 460 HSL--SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS-------GA----CLDSIDTKSQVCAL---LWNS--D 521 (609)
Q Consensus 460 ~~~--~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t-------~~----~~~~~~~~~~v~sl---~~s~--~ 521 (609)
..+ ......+.++.+-+++. .++.+ +.+|.|.++.... +. ....+..+..|+++ .+.+ .
T Consensus 164 ~~va~d~~~~~v~~~~~l~d~~-~~i~~--D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~ 240 (321)
T PF03178_consen 164 ILVARDYQPRWVTAAEFLVDED-TIIVG--DKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSG 240 (321)
T ss_dssp EEEEEESS-BEEEEEEEE-SSS-EEEEE--ETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SS
T ss_pred EEEEecCCCccEEEEEEecCCc-EEEEE--cCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCC
Confidence 222 22355688999987665 44444 4899999988762 22 23445566677777 4444 2
Q ss_pred CC------eEEEEEecCCCeEEE
Q psy4876 522 YK------ELVSAHGFAQNQLII 538 (609)
Q Consensus 522 g~------~l~~~sG~~dg~I~I 538 (609)
+. .++. ++.+|.|.+
T Consensus 241 ~~~~~~~~~i~~--~T~~G~Ig~ 261 (321)
T PF03178_consen 241 SSESPNRPQILY--GTVDGSIGV 261 (321)
T ss_dssp SS-TTEEEEEEE--EETTS-EEE
T ss_pred CCcccccceEEE--EecCCEEEE
Confidence 22 2444 336777763
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0013 Score=70.48 Aligned_cols=179 Identities=14% Similarity=0.148 Sum_probs=111.4
Q ss_pred eEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEe---CC-CcEEEEeCCCCCCCCCccceEeecCCcccEEEEE
Q psy4876 398 NIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGG---ND-NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473 (609)
Q Consensus 398 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs---~D-g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~ 473 (609)
.+.+-|.+ + .....+..-...+..-+|+|++..++... .. ..++++|+.++.. ..+..+.++ -...+
T Consensus 174 ~l~~~D~d-g-~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~----~~i~~~~g~---~~~P~ 244 (425)
T COG0823 174 ELALGDYD-G-YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR----PVILNFNGN---NGAPA 244 (425)
T ss_pred eEEEEccC-C-cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc----ceeeccCCc---cCCcc
Confidence 34444444 2 23344444556677789999998766542 22 3599999998843 233333333 35678
Q ss_pred EcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCe--EEEEECCCCceEEEEe
Q psy4876 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQ--LIIWKYPSLVKVAELH 551 (609)
Q Consensus 474 ~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~--I~Iwd~~~~~~~~~l~ 551 (609)
|+|||+.++.+......-.|++.|+.++.........+.-+.-.|+|+|+.++.++. ..|. |.+++.+.... ..+.
T Consensus 245 fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sd-r~G~p~I~~~~~~g~~~-~riT 322 (425)
T COG0823 245 FSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSD-RGGRPQIYLYDLEGSQV-TRLT 322 (425)
T ss_pred CCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeC-CCCCcceEEECCCCCce-eEee
Confidence 999999888887533344577788887774442233344457889999999998853 4554 55556555443 3333
Q ss_pred CCCCCEEEEEEeCCCCEEEEEECC-CC--EEEEEcCCCc
Q psy4876 552 GHSARVLNLAMSPDETTVLSAGAD-ET--LRLWKIFEKV 587 (609)
Q Consensus 552 ~h~~~V~~l~~spdg~~L~s~s~D-g~--I~iWdl~~~~ 587 (609)
.....-..-.|+|||++|+..+.. |. |.+.++.++.
T Consensus 323 ~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 323 FSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred ccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 333322377899999999877753 44 5555555444
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.044 Score=58.38 Aligned_cols=224 Identities=13% Similarity=0.067 Sum_probs=147.8
Q ss_pred CCeEEEEEccCCCEEEEE-eCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEec---CCeEEEEEcCCCCe
Q psy4876 336 ENVCSVAWIQEGYMLGVG-TSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSR---CGNIVHHDVRSRDH 409 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasg-s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~---dg~I~iwd~~~~~~ 409 (609)
..-..++.++.+..+++. ..+..|.+.|..+.+......... ....+++ ++..+..+.. ++.+.+.|..+..
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~- 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK- 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe-
Confidence 445678888888755544 445889999988777666654332 3344555 4655555544 6888888888764
Q ss_pred eEEEEccCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEecc
Q psy4876 410 KVALLQNHTQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGT 488 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs 488 (609)
.......-..+ ..+++.|+|+.+.++. .++.|.+.|........ .........+ ..-..+.+.|++..+.+...++
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccC-CCCceEEECCCCCEEEEEeccC
Confidence 44444333334 8899999999766655 68899999976552110 0000012222 2336789999998888877544
Q ss_pred CCCeEEEEECCCCceeEE-EcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCC---CCEEEEEEe
Q psy4876 489 ADRHIYFWNVSSGACLDS-IDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHS---ARVLNLAMS 563 (609)
Q Consensus 489 ~Dg~I~iwd~~t~~~~~~-~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~---~~V~~l~~s 563 (609)
.++.+...|..++..... ..... ....+..+|+|+.+.+... ..+.+.+.|..+......+.... ..+..+++.
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~-~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~ 307 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS-QGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAIS 307 (381)
T ss_pred CCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec-CCCeEEEEeCCCCceeeeecccccccccceeccce
Confidence 457999999998887665 22222 6788999999999999754 46899999998887776654332 234555555
Q ss_pred CC
Q psy4876 564 PD 565 (609)
Q Consensus 564 pd 565 (609)
+.
T Consensus 308 ~~ 309 (381)
T COG3391 308 PL 309 (381)
T ss_pred ee
Confidence 43
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0007 Score=73.50 Aligned_cols=137 Identities=13% Similarity=0.165 Sum_probs=91.2
Q ss_pred eEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccce
Q psy4876 380 VGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPI 459 (609)
Q Consensus 380 V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~ 459 (609)
.+|++-++.+++.|+.-|.+++|+-..+........+..+.++.+..|++..++|.|+..|.|.++.+....... ...+
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~-~~~~ 116 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD-LDYV 116 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc-ceee
Confidence 344555678888888888888888776654444444455667778899999999999999999999888743211 0111
Q ss_pred Eee-cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC-----ceeEEEcCCCCeEEEEEcC
Q psy4876 460 HSL-SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG-----ACLDSIDTKSQVCALLWNS 520 (609)
Q Consensus 460 ~~~-~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~-----~~~~~~~~~~~v~sl~~s~ 520 (609)
... ..|...|++++|++++..++ +| ...|+|..-.+.+. .....+...+.|..+.+..
T Consensus 117 t~~d~~~~~rVTal~Ws~~~~k~y-sG--D~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 117 TPCDKSHKCRVTALEWSKNGMKLY-SG--DSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ 180 (726)
T ss_pred ccccccCCceEEEEEecccccEEe-ec--CCCceEEEEEechhhhhccccceeeccCcceEEeeccc
Confidence 111 23678999999999996554 44 57899988877762 1112223345565555543
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.1 Score=50.79 Aligned_cols=137 Identities=14% Similarity=0.060 Sum_probs=85.4
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQL 361 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~i 361 (609)
++.++..+.+.--|..+ |++.--..+ ...|.+-+.- -|++++.|+..|.+.+
T Consensus 26 v~igSHs~~~~avd~~s-------------------------G~~~We~il--g~RiE~sa~v-vgdfVV~GCy~g~lYf 77 (354)
T KOG4649|consen 26 VVIGSHSGIVIAVDPQS-------------------------GNLIWEAIL--GVRIECSAIV-VGDFVVLGCYSGGLYF 77 (354)
T ss_pred EEEecCCceEEEecCCC-------------------------CcEEeehhh--CceeeeeeEE-ECCEEEEEEccCcEEE
Confidence 44566677777777777 444322222 2233332222 5788999999999999
Q ss_pred EeCCCCeeEEEecCCC--CceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEcc-CCCEEEEEeC
Q psy4876 362 WDVSAKKKCRTMDGHD--VRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSP-DGRYLASGGN 438 (609)
Q Consensus 362 wd~~~~~~~~~l~~h~--~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~ 438 (609)
.+..+|.....+.... ..-..+++++.++..|+.|++.+..|.++.. .+...+-..+...+-+..| ++.+.+ +..
T Consensus 78 l~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~f~sP~i~~g~~sly~-a~t 155 (354)
T KOG4649|consen 78 LCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGTFVSPVIAPGDGSLYA-AIT 155 (354)
T ss_pred EEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc-eEEecccCCceeccceecCCCceEEE-Eec
Confidence 9999997776665322 1123356789999999999999999999863 5555544433334445556 444333 333
Q ss_pred CCcEEEEeCC
Q psy4876 439 DNLLNIWSGV 448 (609)
Q Consensus 439 Dg~I~iwd~~ 448 (609)
.|.|.--...
T Consensus 156 ~G~vlavt~~ 165 (354)
T KOG4649|consen 156 AGAVLAVTKN 165 (354)
T ss_pred cceEEEEccC
Confidence 4544443333
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.002 Score=73.22 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=103.6
Q ss_pred CEEEEE-eCCCeEEEEeCCCCeeEEEecCCCCc-eEEEEec-------CCEEEEEecCCeEEEEEcCCCCeeEEEEc---
Q psy4876 348 YMLGVG-TSLGTVQLWDVSAKKKCRTMDGHDVR-VGALAWN-------TYILSSGSRCGNIVHHDVRSRDHKVALLQ--- 415 (609)
Q Consensus 348 ~~Lasg-s~dg~I~iwd~~~~~~~~~l~~h~~~-V~~l~~~-------~~~L~sgs~dg~I~iwd~~~~~~~~~~~~--- 415 (609)
++|+.. .....|+-.|++.|+.+..+..|... |..++-+ +.-.+.|-.+..|..||.|.....+..-.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 444443 24467999999999999999987755 7777652 34566788888999999997542222111
Q ss_pred -cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEE
Q psy4876 416 -NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIY 494 (609)
Q Consensus 416 -~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~ 494 (609)
.......|++-+.+| +||+|+.+|.|++||-- +. .....+.+-..+|..|..+.||.++|+++ +..|.
T Consensus 574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~-----~AKT~lp~lG~pI~~iDvt~DGkwilaTc----~tyLl 642 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GK-----RAKTALPGLGDPIIGIDVTADGKWILATC----KTYLL 642 (794)
T ss_pred cccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-ch-----hhhhcCCCCCCCeeEEEecCCCcEEEEee----cceEE
Confidence 234567788887777 79999999999999943 31 33334456678999999999999999986 78888
Q ss_pred EEECC
Q psy4876 495 FWNVS 499 (609)
Q Consensus 495 iwd~~ 499 (609)
++++.
T Consensus 643 Li~t~ 647 (794)
T PF08553_consen 643 LIDTL 647 (794)
T ss_pred EEEEe
Confidence 88863
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.19 Score=55.92 Aligned_cols=237 Identities=12% Similarity=0.060 Sum_probs=134.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCC--CC--ceEE--EEecCCEEEEEe------cCCeEEEEEcCCCCeeEEEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGH--DV--RVGA--LAWNTYILSSGS------RCGNIVHHDVRSRDHKVALL 414 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h--~~--~V~~--l~~~~~~L~sgs------~dg~I~iwd~~~~~~~~~~~ 414 (609)
+..+++++.|+.|.-.|..+|+.+-..... .. .+.+ +..++ .++.+. .+|.|..+|..+++ .+..+
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~-~lW~~ 197 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGK-LVWRR 197 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCc-eeEec
Confidence 346777888999999999999987765421 11 1111 12244 444543 26889999998875 33332
Q ss_pred ccCC-------------------------------CCe-EEEEEccCCCEEEEEeCC-----C-----------cEEEEe
Q psy4876 415 QNHT-------------------------------QEV-CGLKWSPDGRYLASGGND-----N-----------LLNIWS 446 (609)
Q Consensus 415 ~~h~-------------------------------~~V-~~l~~spdg~~lasgs~D-----g-----------~I~iwd 446 (609)
..-. ..+ ..+++.+...++..+... + .|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 2110 011 123566655566555411 1 577778
Q ss_pred CCCCCCCCCccceEeecC--Ccc-------cEEEEEEcCCCC--cEEEEEeccCCCeEEEEECCCCceeEE--------E
Q psy4876 447 GVPGQHTFSTQPIHSLSR--HQA-------AVKAIAWCPWSP--NVLASGGGTADRHIYFWNVSSGACLDS--------I 507 (609)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~--h~~-------~V~~l~~sp~~~--~llasggGs~Dg~I~iwd~~t~~~~~~--------~ 507 (609)
+++++. .-.++. |.. ...-+.+..+|. .+++.+ +.+|.+++.|-.+|+.+.. .
T Consensus 278 ~~TG~~------~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~--~K~G~~~vlDr~tG~~i~~~~~~~~~~w 349 (527)
T TIGR03075 278 PDTGKI------KWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHA--DRNGFFYVLDRTNGKLLSAEPFVDTVNW 349 (527)
T ss_pred cccCCE------EEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEe--CCCceEEEEECCCCceeccccccCCccc
Confidence 888843 333322 211 111122223554 355555 5999999999999988622 1
Q ss_pred ----cCCC--C----------------------------eEEEEEcCCCCeEEEEEec----------------------
Q psy4876 508 ----DTKS--Q----------------------------VCALLWNSDYKELVSAHGF---------------------- 531 (609)
Q Consensus 508 ----~~~~--~----------------------------v~sl~~s~~g~~l~~~sG~---------------------- 531 (609)
.... + -..++++|+...+++..+.
T Consensus 350 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~ 429 (527)
T TIGR03075 350 ATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAG 429 (527)
T ss_pred ccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccc
Confidence 0000 0 0125666666666553221
Q ss_pred ---------CCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 532 ---------AQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 532 ---------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
.-+.|.=+|+.+++.+-.........-.. +.-.+.+++.++.||.++.+|..+++..-+.+.
T Consensus 430 ~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 430 LTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred cccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 12457778888887776654322111111 222556788888899999999999988765544
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0014 Score=72.32 Aligned_cols=230 Identities=15% Similarity=0.150 Sum_probs=131.1
Q ss_pred CCeEEEEEccCCCEEEEEeC----CCeEEEEeCCCCeeEEEecCCCCceEEEEecC--CEEEEEecCCeEEEEEcCCCCe
Q psy4876 336 ENVCSVAWIQEGYMLGVGTS----LGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT--YILSSGSRCGNIVHHDVRSRDH 409 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~----dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~--~~L~sgs~dg~I~iwd~~~~~~ 409 (609)
+.-+-.+|+|...++|+++- .|.|.||- ++|+..+... ..-.+++++|++ -.|+.|-.-|.+.+|...+.+
T Consensus 16 avsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e- 92 (1416)
T KOG3617|consen 16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE- 92 (1416)
T ss_pred ccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCce-
Confidence 33445689999999998763 57888884 4455433222 233466799985 577788889999999988763
Q ss_pred eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccce--EeecCCcccEEEEEEcCCCCcE-----E
Q psy4876 410 KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPI--HSLSRHQAAVKAIAWCPWSPNV-----L 482 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~--~~~~~h~~~V~~l~~sp~~~~l-----l 482 (609)
.-.....|..+|..+.||++|..++++..-|.|.+|....-... ...++ +.+..| -...|...++++..+ .
T Consensus 93 ~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~-q~~~~~~hel~~~-ltl~cfRL~~~~Ee~~~laKa 170 (1416)
T KOG3617|consen 93 THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEI-QTSNIMQHELNDQ-LTLWCFRLSYDREEKFKLAKA 170 (1416)
T ss_pred eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccc-ccchhhhhHhhce-eeEEEEecCCChHHhhhhhhh
Confidence 44455679999999999999999999999999999987632110 01111 111111 123455556654322 1
Q ss_pred EEEeccCCCeEE-EEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEE
Q psy4876 483 ASGGGTADRHIY-FWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLA 561 (609)
Q Consensus 483 asggGs~Dg~I~-iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~ 561 (609)
++.| ++..+- .++.+....-.+.. + .=.|+|..++++. .+|+|+-.|- .+......+... . ..+-
T Consensus 171 aVtg--De~alD~~fnwk~~~a~rs~~-k------sgv~~g~~F~~~~--~~GtVyyvdq-~g~~~~V~k~dS-~-vQmL 236 (1416)
T KOG3617|consen 171 AVTG--DESALDEPFNWKESLAERSDE-K------SGVPKGTEFLFAG--KSGTVYYVDQ-NGRQRTVHKLDS-E-VQML 236 (1416)
T ss_pred hccC--chhhhcccccCccchhhcccc-c------cCCCCCcEEEEEc--CCceEEEEcC-CCcEEEEEEccc-h-HHHH
Confidence 2221 233222 33322111111111 1 1136677777753 7888887773 344333332211 1 2344
Q ss_pred EeCCCCEEEEEECCCCEEEEEcC
Q psy4876 562 MSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 562 ~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
|.+....|+..-.+-++.++-+.
T Consensus 237 f~~~~eai~~i~e~lr~~l~~v~ 259 (1416)
T KOG3617|consen 237 FMGYCEAISIIIEFLRDCLIFVL 259 (1416)
T ss_pred HhcccceEEEEeeeceeeEEEec
Confidence 55555555555555555554443
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.033 Score=57.86 Aligned_cols=138 Identities=14% Similarity=0.184 Sum_probs=91.8
Q ss_pred CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe
Q psy4876 289 GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK 368 (609)
Q Consensus 289 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~ 368 (609)
|.|+++++..... ...+++.+.+....+.|++++-- +| +|+++.. +.|.+|++...+
T Consensus 62 Gri~v~~i~~~~~--------------------~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~g-~~l~v~~l~~~~ 118 (321)
T PF03178_consen 62 GRILVFEISESPE--------------------NNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAVG-NKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEECSS-------------------------EEEEEEEEEESS-EEEEEEE-TT-EEEEEET-TEEEEEEEETTS
T ss_pred cEEEEEEEEcccc--------------------cceEEEEEEEEeecCcceEhhhh-CC-EEEEeec-CEEEEEEccCcc
Confidence 8899999887100 00245555555567899999877 33 4665554 789999998777
Q ss_pred -eEEEec-CCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEc--cCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q psy4876 369 -KCRTMD-GHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQ--NHTQEVCGLKWSPDGRYLASGGNDNLLNI 444 (609)
Q Consensus 369 -~~~~l~-~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~spdg~~lasgs~Dg~I~i 444 (609)
....-. .....+.++...+++++.|+....|.++.++.....+..+. .....++++.|-++++.++.+..+|.|.+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~ 198 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFV 198 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEE
T ss_pred cchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEE
Confidence 433322 23447888888888999999888888876554333233222 23556888899877779999999999999
Q ss_pred EeCCC
Q psy4876 445 WSGVP 449 (609)
Q Consensus 445 wd~~~ 449 (609)
+....
T Consensus 199 l~~~~ 203 (321)
T PF03178_consen 199 LRYNP 203 (321)
T ss_dssp EEE-S
T ss_pred EEECC
Confidence 98763
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.058 Score=55.35 Aligned_cols=218 Identities=17% Similarity=0.141 Sum_probs=131.5
Q ss_pred EEEEccCCC-EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-cC-CEEEEEecCCeEEEEEcCCCCeeEEEEc-
Q psy4876 340 SVAWIQEGY-MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NT-YILSSGSRCGNIVHHDVRSRDHKVALLQ- 415 (609)
Q Consensus 340 ~v~~spdg~-~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~-~~L~sgs~dg~I~iwd~~~~~~~~~~~~- 415 (609)
+..|.++.. ++.+--..+.|.-|+..+++. ..+. +...+.++.. +. ..|+++ ..| +.+++.+++.. +..+.
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~-~~g-~~~~~~~~~~~-~t~~~~ 103 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIAC-EHG-VRLLDPDTGGK-ITLLAE 103 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEE-ccc-cEEEeccCCce-eEEecc
Confidence 345777776 455556678899999876542 2222 2222333333 43 344443 333 55666654432 12221
Q ss_pred ---c-CCCCeEEEEEccCCCEEEEEeC-----------CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCc
Q psy4876 416 ---N-HTQEVCGLKWSPDGRYLASGGN-----------DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPN 480 (609)
Q Consensus 416 ---~-h~~~V~~l~~spdg~~lasgs~-----------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 480 (609)
+ -....+.+...|+|.+.++... -|.|+.+|. .+ ..+..+..+-..-+.|+|+||++.
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g------~~~~l~~~~~~~~NGla~SpDg~t 176 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG------GVVRLLDDDLTIPNGLAFSPDGKT 176 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC------CEEEeecCcEEecCceEECCCCCE
Confidence 1 1134567888999986665433 134555554 23 344555555555688999999988
Q ss_pred EEEEEeccCCCeEEEEECCC--Cce---e-EE-Ec-CCCCeEEEEEcCCCCeEEEEEecCC-CeEEEEECCCCceEEEEe
Q psy4876 481 VLASGGGTADRHIYFWNVSS--GAC---L-DS-ID-TKSQVCALLWNSDYKELVSAHGFAQ-NQLIIWKYPSLVKVAELH 551 (609)
Q Consensus 481 llasggGs~Dg~I~iwd~~t--~~~---~-~~-~~-~~~~v~sl~~s~~g~~l~~~sG~~d-g~I~Iwd~~~~~~~~~l~ 551 (609)
++++- +..+.|+-|++.. +.. . .. +. ..+..-.++...+|.+.+++. .+ +.|.+|+.. ++++..+.
T Consensus 177 ly~aD--T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~--~~g~~v~~~~pd-G~l~~~i~ 251 (307)
T COG3386 177 LYVAD--TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV--WGGGRVVRFNPD-GKLLGEIK 251 (307)
T ss_pred EEEEe--CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc--cCCceEEEECCC-CcEEEEEE
Confidence 87775 4678888888752 211 1 11 11 234566788888888886533 33 489999987 99999988
Q ss_pred CCCCCEEEEEEe-CCCCEEEEEEC
Q psy4876 552 GHSARVLNLAMS-PDETTVLSAGA 574 (609)
Q Consensus 552 ~h~~~V~~l~~s-pdg~~L~s~s~ 574 (609)
.....+++++|- ++.+.|+..+.
T Consensus 252 lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 252 LPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCCCCccceEeCCCcCEEEEEec
Confidence 887888999995 45565554444
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.088 Score=53.12 Aligned_cols=224 Identities=16% Similarity=0.137 Sum_probs=122.9
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC-eeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEE--------
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAK-KKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVAL-------- 413 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~-------- 413 (609)
..++.|++|+.+| |.+++.... +...... ...|..+..- -+.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578999999999 899998332 3333222 2237877773 34454443 499999998754322100
Q ss_pred -----EccCCCCeEEEE---EccCCCEEEEEeCCCcEEEEeCCCCCCCCCc-cceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 414 -----LQNHTQEVCGLK---WSPDGRYLASGGNDNLLNIWSGVPGQHTFST-QPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 414 -----~~~h~~~V~~l~---~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
.......+...+ -...+..|+++. ...|.+|........ . .....+. -...+.+++|.. ..++.
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~--f~~~~ke~~-lp~~~~~i~~~~---~~i~v 153 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNS--FSKLLKEIS-LPDPPSSIAFLG---NKICV 153 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCccc--ccceeEEEE-cCCCcEEEEEeC---CEEEE
Confidence 111223344444 112333455544 468888887764211 1 2334443 346788999984 34555
Q ss_pred EeccCCCeEEEEECCCCceeEEEcCCC------------CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE--EE
Q psy4876 485 GGGTADRHIYFWNVSSGACLDSIDTKS------------QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVA--EL 550 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t~~~~~~~~~~~------------~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~--~l 550 (609)
| ..+...+.|+.++.....+.... ....+.--+++.+|++ .++.-.+.|. .|+... .+
T Consensus 154 ~---~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~----~~~~g~fv~~-~G~~~r~~~i 225 (275)
T PF00780_consen 154 G---TSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLC----YDNIGVFVNK-NGEPSRKSTI 225 (275)
T ss_pred E---eCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEE----ecceEEEEcC-CCCcCcccEE
Confidence 4 36778999999776654442211 1222222333444443 1333333343 343332 22
Q ss_pred eCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 551 HGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 551 ~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
.- ...+..+++ ...+|+..+. +.|.||++.++...+.
T Consensus 226 ~W-~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 226 QW-SSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQT 262 (275)
T ss_pred Ec-CCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEE
Confidence 21 234556666 3557877766 4599999999976443
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00079 Score=44.11 Aligned_cols=38 Identities=37% Similarity=0.634 Sum_probs=33.8
Q ss_pred ceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEE
Q psy4876 545 VKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWK 582 (609)
Q Consensus 545 ~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWd 582 (609)
..+..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.059 Score=51.65 Aligned_cols=204 Identities=14% Similarity=0.147 Sum_probs=121.7
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEE-ecCCCCceEEEEe---c-CCEEEEEe-cCCeEEEEEcCCCCe-eEEEEc----
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRT-MDGHDVRVGALAW---N-TYILSSGS-RCGNIVHHDVRSRDH-KVALLQ---- 415 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~---~-~~~L~sgs-~dg~I~iwd~~~~~~-~~~~~~---- 415 (609)
+.++.+--..|.|.-||..+.+..+. +.+ ..+.++.+ + +..++++. ..-.|.-||...... ...++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 35666666667888899987554432 332 22333333 2 23444433 333456677443211 111111
Q ss_pred -cCCCCeEEEEEccCCCEEEEEeC---------CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEE
Q psy4876 416 -NHTQEVCGLKWSPDGRYLASGGN---------DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 416 -~h~~~V~~l~~spdg~~lasgs~---------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 485 (609)
......+.-..+|+|++++-.-. .|.++.|-... .+..+...-.--..++|+.+.+.+..+-
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--------~v~~i~~~v~IsNgl~Wd~d~K~fY~iD 176 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--------QVELIWNCVGISNGLAWDSDAKKFYYID 176 (310)
T ss_pred hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--------CceeeehhccCCccccccccCcEEEEEc
Confidence 01334566678999998543222 24566665432 2333333344457899998887777775
Q ss_pred eccCCCeEEEEE--CCCCcee-----EEEcC-----CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC
Q psy4876 486 GGTADRHIYFWN--VSSGACL-----DSIDT-----KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH 553 (609)
Q Consensus 486 gGs~Dg~I~iwd--~~t~~~~-----~~~~~-----~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h 553 (609)
+.+-.|.-|| ..+|... ..++. +-..-.++...+|++.+++ +..++|..+|..+|+.+.++.-.
T Consensus 177 --sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~--~ng~~V~~~dp~tGK~L~eiklP 252 (310)
T KOG4499|consen 177 --SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT--FNGGTVQKVDPTTGKILLEIKLP 252 (310)
T ss_pred --cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE--ecCcEEEEECCCCCcEEEEEEcC
Confidence 4778887787 5566432 22221 1123455667778777773 47899999999999999999988
Q ss_pred CCCEEEEEEeC
Q psy4876 554 SARVLNLAMSP 564 (609)
Q Consensus 554 ~~~V~~l~~sp 564 (609)
...|+++||--
T Consensus 253 t~qitsccFgG 263 (310)
T KOG4499|consen 253 TPQITSCCFGG 263 (310)
T ss_pred CCceEEEEecC
Confidence 99999999964
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.1 Score=53.59 Aligned_cols=187 Identities=19% Similarity=0.164 Sum_probs=106.3
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCC-----CceEEEEe--cCCEEEEEec-----------C
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHD-----VRVGALAW--NTYILSSGSR-----------C 396 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~-----~~V~~l~~--~~~~L~sgs~-----------d 396 (609)
.+.+.++.....+..|+++.. | +.+++.+++..+..+..-. .+...+.. +|.+.++... -
T Consensus 65 p~~~~~~~~~d~~g~Lv~~~~-g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~ 142 (307)
T COG3386 65 PGGFSSGALIDAGGRLIACEH-G-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPT 142 (307)
T ss_pred CCCcccceeecCCCeEEEEcc-c-cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCc
Confidence 345556655555555554433 3 6777776655533332111 22222333 3444333222 1
Q ss_pred CeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCC-CcEEEEeCCC--CCCCCCccceEeecCCcccEEEEE
Q psy4876 397 GNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGND-NLLNIWSGVP--GQHTFSTQPIHSLSRHQAAVKAIA 473 (609)
Q Consensus 397 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~D-g~I~iwd~~~--~~~~~~~~~~~~~~~h~~~V~~l~ 473 (609)
|.|+.+|. . ...+..+..+-..-++|+||||++.|..+... +.|+-|++.. +.... ......+....+..-.++
T Consensus 143 G~lyr~~p-~-g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~-~~~~~~~~~~~G~PDG~~ 219 (307)
T COG3386 143 GSLYRVDP-D-GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG-RRGFVDFDEEPGLPDGMA 219 (307)
T ss_pred ceEEEEcC-C-CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC-cceEEEccCCCCCCCceE
Confidence 33444443 2 34556666666667899999999887777654 7888888763 21111 112223333445566777
Q ss_pred EcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEc-CCCCeEEEEE
Q psy4876 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWN-SDYKELVSAH 529 (609)
Q Consensus 474 ~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s-~~g~~l~~~s 529 (609)
...+| ++.+++. ...+.|.+|+.. |+.+..+... ..+++++|- ++.+.|++++
T Consensus 220 vDadG-~lw~~a~-~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 220 VDADG-NLWVAAV-WGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EeCCC-CEEEecc-cCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 77777 4554432 122499999988 9999999877 688888885 4556666654
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.095 Score=52.09 Aligned_cols=160 Identities=14% Similarity=0.156 Sum_probs=107.4
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCC-CCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGH-DVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
...|.++.|+|+.+.|++......-.||=...|+.++++.-. -.....|.| ++.+.++--+++.+.++.+......+
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 345999999999999998888888888877889999887632 233445666 45666666678888888776543211
Q ss_pred E------EEc--cC-CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC-------cccEEEEEEc
Q psy4876 412 A------LLQ--NH-TQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH-------QAAVKAIAWC 475 (609)
Q Consensus 412 ~------~~~--~h-~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-------~~~V~~l~~s 475 (609)
. .+. .+ ....-+++|.|....|..+=+-+-+.||......... .++....+ -..|.++.|+
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l---~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSL---SVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccc---ccccccCcccccceEeeccccceec
Confidence 1 111 12 4567899999988888888877777777766432111 11111111 2357788899
Q ss_pred CCCCcEEEEEeccCCCeEEEEECC
Q psy4876 476 PWSPNVLASGGGTADRHIYFWNVS 499 (609)
Q Consensus 476 p~~~~llasggGs~Dg~I~iwd~~ 499 (609)
+....+++.+ .+++.+.-.|..
T Consensus 242 ~~~~~LLVLS--~ESr~l~Evd~~ 263 (316)
T COG3204 242 AITNSLLVLS--DESRRLLEVDLS 263 (316)
T ss_pred CCCCcEEEEe--cCCceEEEEecC
Confidence 8877888876 377777777764
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.56 Score=50.46 Aligned_cols=260 Identities=15% Similarity=0.076 Sum_probs=134.6
Q ss_pred cccccCCccCCce---eEEEEEecCCC-eEEE--EcCC----eEEEEeCCCCCCCceEEecCCcccccccccccccccee
Q psy4876 258 DRILDAPEIQNDY---YLNLIDWSHFN-VLAV--ALGG----SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAID 327 (609)
Q Consensus 258 ~~il~ap~~~~~~---~v~~l~wsp~~-lla~--s~dg----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (609)
+.+||.-.+..+. .+..+.+||++ .+|. +.+| .|+++|+++ +...
T Consensus 109 evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-------------------------g~~l 163 (414)
T PF02897_consen 109 EVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-------------------------GKFL 163 (414)
T ss_dssp EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT-------------------------TEEE
T ss_pred EEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCC-------------------------CcCc
Confidence 5566655554444 34468899987 5553 3444 599999998 5332
Q ss_pred eeeeecCCCCeEEEEEccCCCEEEEEeCCC-----------eEEEEeCCCCee--EEEecCCCCc--eEEEEe--cCCEE
Q psy4876 328 HLMDLEGNENVCSVAWIQEGYMLGVGTSLG-----------TVQLWDVSAKKK--CRTMDGHDVR--VGALAW--NTYIL 390 (609)
Q Consensus 328 ~l~~~~h~~~V~~v~~spdg~~Lasgs~dg-----------~I~iwd~~~~~~--~~~l~~h~~~--V~~l~~--~~~~L 390 (609)
.- .+. ......+.|.++++.|+....+. .|..|.+.+... ...+...... ...+.. ++++|
T Consensus 164 ~d-~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l 241 (414)
T PF02897_consen 164 PD-GIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYL 241 (414)
T ss_dssp EE-EEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEE
T ss_pred CC-ccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEE
Confidence 11 111 11223499999987766554332 378888876532 2444443333 344555 56766
Q ss_pred EEEecC----CeEEEEEcCCC---CeeEEEEccCCCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCCCCCCCCccceE
Q psy4876 391 SSGSRC----GNIVHHDVRSR---DHKVALLQNHTQEVCGLKWSPDGRYLASGGN---DNLLNIWSGVPGQHTFSTQPIH 460 (609)
Q Consensus 391 ~sgs~d----g~I~iwd~~~~---~~~~~~~~~h~~~V~~l~~spdg~~lasgs~---Dg~I~iwd~~~~~~~~~~~~~~ 460 (609)
+..... ..+.+.|+... ......+......+....-+..+.+++.... .+.|...++...... ....
T Consensus 242 ~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~---~~~~ 318 (414)
T PF02897_consen 242 FISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPA---EWWT 318 (414)
T ss_dssp EEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGG---GEEE
T ss_pred EEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccc---ccee
Confidence 654332 34778888764 2233444434434433333334434433322 356777787766310 1122
Q ss_pred eecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC--CCeEEEEEcCCCCeEEEEEec--CCCeE
Q psy4876 461 SLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK--SQVCALLWNSDYKELVSAHGF--AQNQL 536 (609)
Q Consensus 461 ~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~--~~v~sl~~s~~g~~l~~~sG~--~dg~I 536 (609)
.+..+...+.-..+...+..|++..--.....|+++|+..+.....+... +.|..+...+++..+.....+ .-+++
T Consensus 319 ~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~ 398 (414)
T PF02897_consen 319 VLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTV 398 (414)
T ss_dssp EEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEE
T ss_pred EEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEE
Confidence 44445553333333344556776653122356889999844555444433 345666666666666543221 24567
Q ss_pred EEEECCCCceE
Q psy4876 537 IIWKYPSLVKV 547 (609)
Q Consensus 537 ~Iwd~~~~~~~ 547 (609)
+.||+.+++..
T Consensus 399 y~~d~~t~~~~ 409 (414)
T PF02897_consen 399 YRYDLATGELT 409 (414)
T ss_dssp EEEETTTTCEE
T ss_pred EEEECCCCCEE
Confidence 78888777643
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.042 Score=46.79 Aligned_cols=99 Identities=13% Similarity=0.169 Sum_probs=68.6
Q ss_pred eEEEEEcc---CC-CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 338 VCSVAWIQ---EG-YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 338 V~~v~~sp---dg-~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
|++|++.. +| +.|++|+.|..|+||+-. ..+..+..+ ..|.++.- .+..|+.+..+|+|-+|+-.. .+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~---RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGGGRFAYALANGTVGVYDRSQ---RLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCCCEEEEEecCCEEEEEeCcc---eee
Confidence 56666654 44 789999999999999854 667777644 45555555 678899999999999998754 344
Q ss_pred EEccCCCCeEEEEEcc-C--CC-EEEEEeCCCcEE
Q psy4876 413 LLQNHTQEVCGLKWSP-D--GR-YLASGGNDNLLN 443 (609)
Q Consensus 413 ~~~~h~~~V~~l~~sp-d--g~-~lasgs~Dg~I~ 443 (609)
..+.. ..+.++++.. + |. .|++|-.+|.|-
T Consensus 76 RiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 44433 3366666544 3 22 588888888764
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.35 Score=48.06 Aligned_cols=269 Identities=12% Similarity=0.025 Sum_probs=145.1
Q ss_pred EEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEE
Q psy4876 274 LIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVG 353 (609)
Q Consensus 274 ~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasg 353 (609)
.+.++.+....+..+..++|.|+.+. .+..++-.+...+.-.++..+ |++..++
T Consensus 91 Dv~vse~yvyvad~ssGL~IvDIS~P------------------------~sP~~~~~lnt~gyaygv~vs--Gn~aYVa 144 (370)
T COG5276 91 DVRVSEEYVYVADWSSGLRIVDISTP------------------------DSPTLIGFLNTDGYAYGVYVS--GNYAYVA 144 (370)
T ss_pred eeEecccEEEEEcCCCceEEEeccCC------------------------CCcceeccccCCceEEEEEec--CCEEEEe
Confidence 35555555555666778999999883 233334344334555566554 7888888
Q ss_pred eCCCeEEEEeCCCC---eeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEc-cCCCCeEEEEEccC
Q psy4876 354 TSLGTVQLWDVSAK---KKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQ-NHTQEVCGLKWSPD 429 (609)
Q Consensus 354 s~dg~I~iwd~~~~---~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spd 429 (609)
..|.-+.+.|+.+. .+...+.........++.+|++-..+..|+-+.+.|+.....++..-. .....+.++..+++
T Consensus 145 dlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn 224 (370)
T COG5276 145 DLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN 224 (370)
T ss_pred eccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC
Confidence 86655778888654 444555555555677888899999999999999999987654433222 22336888888877
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCccc--EEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc---ee
Q psy4876 430 GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAA--VKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA---CL 504 (609)
Q Consensus 430 g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~--V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~---~~ 504 (609)
..+++...+ -+.+-|....... ..+... ....+ ++.+..+ ++...+.- .+.-+.+-|+.+.. ..
T Consensus 225 r~y~vvy~e--gvlivd~s~~ssp---~~~gsy-et~~p~~~s~v~Vs--~~~~Yvad---ga~gl~~idisnp~spfl~ 293 (370)
T COG5276 225 RAYLVVYDE--GVLIVDVSGPSSP---TVFGSY-ETSNPVSISTVPVS--GEYAYVAD---GAKGLPIIDISNPPSPFLS 293 (370)
T ss_pred eeEEEEccc--ceEEEecCCCCCc---eEeecc-ccCCcccccceecc--cceeeeec---cccCceeEeccCCCCCchh
Confidence 766666543 4777787765321 111111 12222 2222222 22333322 24445555554321 11
Q ss_pred EEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEc
Q psy4876 505 DSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKI 583 (609)
Q Consensus 505 ~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl 583 (609)
..+.+.+ +...+..+.. ++..+ ..+...+.+....+......+-...+.+.+.+-+.+.+.+...++-+.||+.
T Consensus 294 ss~~t~g~~a~gi~ay~~--y~yia---dkn~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 294 SSLDTAGYQAAGIRAYGN--YNYIA---DKNTGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred ccccCCCccccceEEecC--eeEec---cCCceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 2222222 2222222222 22221 1123333333222222222222223444455556678889999999999986
Q ss_pred C
Q psy4876 584 F 584 (609)
Q Consensus 584 ~ 584 (609)
.
T Consensus 369 ~ 369 (370)
T COG5276 369 L 369 (370)
T ss_pred c
Confidence 3
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.48 Score=50.51 Aligned_cols=88 Identities=13% Similarity=0.140 Sum_probs=58.2
Q ss_pred eecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCC--CeEEEEEcC----------------CC
Q psy4876 461 SLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKS--QVCALLWNS----------------DY 522 (609)
Q Consensus 461 ~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~--~v~sl~~s~----------------~g 522 (609)
.+.+....+.+++.+|++ .++++. ..-|.|.++|+.++..++.+++-. ++.-+.... ..
T Consensus 302 ~l~D~~R~~~~i~~sP~~-~laA~t--DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSG-RLAAVT--DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred eeccCCceEEEEEECCCC-CEEEEE--cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 344455568899999996 466654 367999999999998887776532 221111111 11
Q ss_pred CeEEEEEecCCCeEEEEECCCCceEEEEe
Q psy4876 523 KELVSAHGFAQNQLIIWKYPSLVKVAELH 551 (609)
Q Consensus 523 ~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~ 551 (609)
..+++...-..|.|.||.++++..+..+.
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 23444445578999999999888877664
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.026 Score=63.27 Aligned_cols=152 Identities=14% Similarity=0.120 Sum_probs=93.3
Q ss_pred CCeEEEEEccCCCEEEEEe------CCC--cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEec---
Q psy4876 419 QEVCGLKWSPDGRYLASGG------NDN--LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGG--- 487 (609)
Q Consensus 419 ~~V~~l~~spdg~~lasgs------~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggG--- 487 (609)
..+.+.+++|||+.+|... .|. .|++++.... ......+. ....-.|+|+|..+.+...+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-------~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~ 420 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-------AVQVLEGH--SLTRPSWSLDADAVWVVVDGNTV 420 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-------ceeeecCC--CCCCceECCCCCceEEEecCcce
Confidence 4678899999999887765 243 4556564221 21112222 37788999998766655311
Q ss_pred ------cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEE---EECCCCc-eE---EEEe-CC
Q psy4876 488 ------TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLII---WKYPSLV-KV---AELH-GH 553 (609)
Q Consensus 488 ------s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~I---wd~~~~~-~~---~~l~-~h 553 (609)
...+.+.+.++..+.... .....|..+.|+|||..++... +++|+| -....+. .+ ..+. +-
T Consensus 421 ~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~---~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l 495 (591)
T PRK13616 421 VRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII---GGKVYLAVVEQTEDGQYALTNPREVGPGL 495 (591)
T ss_pred EEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE---CCEEEEEEEEeCCCCceeecccEEeeccc
Confidence 123445555555544433 3355799999999999999876 478877 4544554 11 1122 23
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 554 SARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 554 ~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
...+.++.|..++.++ ++..++...+|.+.-
T Consensus 496 ~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~v 526 (591)
T PRK13616 496 GDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNL 526 (591)
T ss_pred CCccccceEecCCEEE-EEecCCCCceEEEec
Confidence 3446889999999855 555555555666543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.82 Score=50.85 Aligned_cols=61 Identities=5% Similarity=0.019 Sum_probs=41.8
Q ss_pred CeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC
Q psy4876 491 RHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH 553 (609)
Q Consensus 491 g~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h 553 (609)
+.|.-+|+.+|+.+-..........-...-.+..+++ +..+|.++.+|..+++.+..++-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~--g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFY--GTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEE--ECCCCeEEEEECCCCCEeEEEeCC
Confidence 5688889999988877664432211112224445555 557999999999999999888654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0034 Score=67.59 Aligned_cols=93 Identities=19% Similarity=0.326 Sum_probs=76.7
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceE-EEEe--cCCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVG-ALAW--NTYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~-~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
...|.-+.|+|.-..+|.+..+|.|.+..+. .+.+.++.-|...++ +++| +|+.|+.|-.||+|+++|+.++....
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3567889999999999999999999999988 678888887777777 9999 69999999999999999999985443
Q ss_pred EEEccCCCCeEEEEEcc
Q psy4876 412 ALLQNHTQEVCGLKWSP 428 (609)
Q Consensus 412 ~~~~~h~~~V~~l~~sp 428 (609)
.....-...|.++-|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 33334456677777763
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.057 Score=60.48 Aligned_cols=217 Identities=7% Similarity=0.131 Sum_probs=106.8
Q ss_pred eEEEEeCCCCeeEE--EecCCCCceEEEEecCCEEEEEecC------CeEEEEEcCCCCe-eEEEEccCCCCeEEEEEcc
Q psy4876 358 TVQLWDVSAKKKCR--TMDGHDVRVGALAWNTYILSSGSRC------GNIVHHDVRSRDH-KVALLQNHTQEVCGLKWSP 428 (609)
Q Consensus 358 ~I~iwd~~~~~~~~--~l~~h~~~V~~l~~~~~~L~sgs~d------g~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~sp 428 (609)
.+..||..+++-.. .+.........+..++.+++.|+.+ ..+..||..+..- .+..+....... +++ .-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EE
Confidence 57788887764322 2222222233444578888888854 3477888776521 111111111111 222 23
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC--------------
Q psy4876 429 DGRYLASGGNDN-----LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA-------------- 489 (609)
Q Consensus 429 dg~~lasgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~-------------- 489 (609)
+|.+.+.||.++ .|..||..+... ..+..+.........++. +..+++.||.+.
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W----~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~ 423 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKW----KMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSID 423 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeE----EECCCCCcccccccEEEE---CCEEEEEeCCCccccccccccccccc
Confidence 677888888754 488899876521 111122111111122222 346777775211
Q ss_pred -------CCeEEEEECCCCcee--EEEcCCCCeEEEEEcCCCCeEEEEEecCC-----CeEEEEECCC---CceEEEEeC
Q psy4876 490 -------DRHIYFWNVSSGACL--DSIDTKSQVCALLWNSDYKELVSAHGFAQ-----NQLIIWKYPS---LVKVAELHG 552 (609)
Q Consensus 490 -------Dg~I~iwd~~t~~~~--~~~~~~~~v~sl~~s~~g~~l~~~sG~~d-----g~I~Iwd~~~---~~~~~~l~~ 552 (609)
-..+..||..+.+-. ..+... ....-+..-++ .|++.+|..+ ..+..||..+ ++.+..+..
T Consensus 424 ~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~ 501 (557)
T PHA02713 424 MEEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIRPGVVSHKD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES 501 (557)
T ss_pred ccccccccceEEEECCCCCeEeecCCCCcc-cccCcEEEECC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc
Confidence 135777887765432 111111 11111112233 3444434322 3467888775 344444433
Q ss_pred CCCCEEEEEEeCCCCEEEEEECCC--CEEEEEcCCCc
Q psy4876 553 HSARVLNLAMSPDETTVLSAGADE--TLRLWKIFEKV 587 (609)
Q Consensus 553 h~~~V~~l~~spdg~~L~s~s~Dg--~I~iWdl~~~~ 587 (609)
.......+.+ +|++.++||.|+ ++..||..+.+
T Consensus 502 ~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 502 RLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 3333333333 788889999888 66667766544
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0029 Score=41.22 Aligned_cols=37 Identities=38% Similarity=0.787 Sum_probs=33.0
Q ss_pred eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q psy4876 410 KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWS 446 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd 446 (609)
....+..|...|.++.|++++.++++++.|+.|++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4556677889999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.068 Score=45.51 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=65.2
Q ss_pred EEecCCC---eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEE
Q psy4876 275 IDWSHFN---VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLG 351 (609)
Q Consensus 275 l~wsp~~---lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~La 351 (609)
++|..++ +++++.|..|++|+-+. .+.++...+.|++++-... ..++
T Consensus 8 ~d~d~dg~~eLlvGs~D~~IRvf~~~e-----------------------------~~~Ei~e~~~v~~L~~~~~-~~F~ 57 (111)
T PF14783_consen 8 FDFDGDGENELLVGSDDFEIRVFKGDE-----------------------------IVAEITETDKVTSLCSLGG-GRFA 57 (111)
T ss_pred EecCCCCcceEEEecCCcEEEEEeCCc-----------------------------EEEEEecccceEEEEEcCC-CEEE
Confidence 4455553 99999999999998544 5556666788888888766 5688
Q ss_pred EEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-c----C-CEEEEEecCCeEE
Q psy4876 352 VGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-N----T-YILSSGSRCGNIV 400 (609)
Q Consensus 352 sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~----~-~~L~sgs~dg~I~ 400 (609)
.+..+|+|-+|+-. ..+...+. ...+.++.+ + | .-|++|-.+|.|-
T Consensus 58 Y~l~NGTVGvY~~~--~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 58 YALANGTVGVYDRS--QRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEecCCEEEEEeCc--ceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 89999999999853 33333332 233666665 3 2 4788998888774
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.36 Score=47.81 Aligned_cols=114 Identities=18% Similarity=0.316 Sum_probs=71.6
Q ss_pred CEEEEEecCCe-EEEEEcCCCCeeEEEEccCC-CCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCCCCCCccceE
Q psy4876 388 YILSSGSRCGN-IVHHDVRSRDHKVALLQNHT-QEVCGLKWSPDGRYLASGGND-----NLLNIWSGVPGQHTFSTQPIH 460 (609)
Q Consensus 388 ~~L~sgs~dg~-I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~lasgs~D-----g~I~iwd~~~~~~~~~~~~~~ 460 (609)
.-++.+-+-|+ ..++|....+.++....... .-.-.-+|||||.+|...-+| |.|-|||.+.+ .+.+.
T Consensus 81 ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~-----fqrvg 155 (366)
T COG3490 81 RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG-----FQRVG 155 (366)
T ss_pred ceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc-----cceec
Confidence 44444444454 45778777653332211111 111123799999999876554 78999999865 36777
Q ss_pred eecCCcccEEEEEEcCCCCcEEEEEec---------------cCCCeEEEEECCCCceeEE
Q psy4876 461 SLSRHQAAVKAIAWCPWSPNVLASGGG---------------TADRHIYFWNVSSGACLDS 506 (609)
Q Consensus 461 ~~~~h~~~V~~l~~sp~~~~llasggG---------------s~Dg~I~iwd~~t~~~~~~ 506 (609)
.+..|.-.-..+.|.+||..+++..|| +..-.+.+.|..+|+.+..
T Consensus 156 E~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liek 216 (366)
T COG3490 156 EFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEK 216 (366)
T ss_pred ccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhh
Confidence 888888888899999999877666542 1123456667666665433
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.033 Score=63.51 Aligned_cols=139 Identities=11% Similarity=0.068 Sum_probs=90.7
Q ss_pred ecCCeEEEEEcCCCCeeEEEEccCCCC-eEEEEEcc-----CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcc
Q psy4876 394 SRCGNIVHHDVRSRDHKVALLQNHTQE-VCGLKWSP-----DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA 467 (609)
Q Consensus 394 s~dg~I~iwd~~~~~~~~~~~~~h~~~-V~~l~~sp-----dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 467 (609)
.....|+-.|+..+ ..+..+..|... |..++-.. .....+.|-.++.|..||.+-..........+.+ ....
T Consensus 501 ~~~~~ly~mDLe~G-KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~ 578 (794)
T PF08553_consen 501 NNPNKLYKMDLERG-KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKN 578 (794)
T ss_pred CCCCceEEEecCCC-cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCC
Confidence 35577888999987 577777776644 55443221 1334567778899999999864210000011122 2344
Q ss_pred cEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 468 AVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 468 ~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
...|++-..+| .+|+| +.+|.||+||--.......+.+ +.+|..|..+.||+++++.| +..|.+++.
T Consensus 579 ~Fs~~aTt~~G--~iavg--s~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc---~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDG--YIAVG--SNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC---KTYLLLIDT 646 (794)
T ss_pred CceEEEecCCc--eEEEE--eCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee---cceEEEEEE
Confidence 57788877766 45565 5899999999432222223333 57999999999999999876 777888775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0058 Score=65.85 Aligned_cols=93 Identities=20% Similarity=0.362 Sum_probs=76.8
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEE-EEEEcCCCCcEEEEEeccCCCeEEEE
Q psy4876 418 TQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVK-AIAWCPWSPNVLASGGGTADRHIYFW 496 (609)
Q Consensus 418 ~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~llasggGs~Dg~I~iw 496 (609)
...|.-+.|+|.-.++|.+..+|.|.+..+. . +.+.++..|...++ +++|.||| .++|.| -.||+|++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~------qRlwtip~p~~~v~~sL~W~~DG-kllaVg--~kdG~I~L~ 89 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-W------QRLWTIPIPGENVTASLCWRPDG-KLLAVG--FKDGTIRLH 89 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-c------ceeEeccCCCCccceeeeecCCC-CEEEEE--ecCCeEEEE
Confidence 3467789999999999999999999988877 3 56777776777776 99999997 688887 489999999
Q ss_pred ECCCCceeEE--EcCCCCeEEEEEcC
Q psy4876 497 NVSSGACLDS--IDTKSQVCALLWNS 520 (609)
Q Consensus 497 d~~t~~~~~~--~~~~~~v~sl~~s~ 520 (609)
|+.++..+.. +.....|.++.|.+
T Consensus 90 Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EccCCCceeccccccccchheeeccc
Confidence 9999998888 45556788888863
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.096 Score=58.67 Aligned_cols=206 Identities=13% Similarity=0.129 Sum_probs=111.4
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCC-C-----eEEEEeCCCCee--EEEecCCCCceEEEEecCCEEEEEec
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSL-G-----TVQLWDVSAKKK--CRTMDGHDVRVGALAWNTYILSSGSR 395 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~d-g-----~I~iwd~~~~~~--~~~l~~h~~~V~~l~~~~~~L~sgs~ 395 (609)
+....+..+.....-.+++.. ++...++|+.| | .+..||..+++- +..+............+|.+.++|+.
T Consensus 311 ~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~ 389 (571)
T KOG4441|consen 311 NEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGF 389 (571)
T ss_pred CcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEecc
Confidence 556666666544444455554 45677778888 3 577888877652 23344444555666678999999999
Q ss_pred CCe-----EEEEEcCCCCeeEEEEccCCCCeEEEEE-ccCCCEEEEEeCCC------cEEEEeCCCCCCCCCccceEeec
Q psy4876 396 CGN-----IVHHDVRSRDHKVALLQNHTQEVCGLKW-SPDGRYLASGGNDN------LLNIWSGVPGQHTFSTQPIHSLS 463 (609)
Q Consensus 396 dg~-----I~iwd~~~~~~~~~~~~~h~~~V~~l~~-spdg~~lasgs~Dg------~I~iwd~~~~~~~~~~~~~~~~~ 463 (609)
||. |-.||..+.. -...........+... .-+|.+.++||.|+ .|..||..+... ..+..+.
T Consensus 390 dg~~~l~svE~YDp~~~~--W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W----~~~~~M~ 463 (571)
T KOG4441|consen 390 DGEKSLNSVECYDPVTNK--WTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW----TLIAPMN 463 (571)
T ss_pred ccccccccEEEecCCCCc--ccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce----eecCCcc
Confidence 975 6778877653 1111112112222222 22688888888654 578888887632 2222222
Q ss_pred CCcccEEEEEEcCCCCcEEEEEeccCCC-----eEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCC----
Q psy4876 464 RHQAAVKAIAWCPWSPNVLASGGGTADR-----HIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQN---- 534 (609)
Q Consensus 464 ~h~~~V~~l~~sp~~~~llasggGs~Dg-----~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg---- 534 (609)
..........+ +..|++.|| .|+ +|..||..+.+-...-........+.....+..+++..| .+|
T Consensus 464 ~~R~~~g~a~~---~~~iYvvGG--~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG-~~~~~~l 537 (571)
T KOG4441|consen 464 TRRSGFGVAVL---NGKIYVVGG--FDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG-FDGNNNL 537 (571)
T ss_pred cccccceEEEE---CCEEEEECC--ccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec-ccCcccc
Confidence 22222222222 346888875 333 477788877654433222223333333334445555434 333
Q ss_pred -eEEEEECC
Q psy4876 535 -QLIIWKYP 542 (609)
Q Consensus 535 -~I~Iwd~~ 542 (609)
+|..||..
T Consensus 538 ~~ve~ydp~ 546 (571)
T KOG4441|consen 538 NTVECYDPE 546 (571)
T ss_pred ceeEEcCCC
Confidence 35555543
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.12 Score=57.86 Aligned_cols=230 Identities=14% Similarity=0.170 Sum_probs=120.5
Q ss_pred CCCEEEEEeCCC------eEEEEeCCCCee--EEEecCCCCceEEEEecCCEEEEEecC-C-----eEEEEEcCCCCeeE
Q psy4876 346 EGYMLGVGTSLG------TVQLWDVSAKKK--CRTMDGHDVRVGALAWNTYILSSGSRC-G-----NIVHHDVRSRDHKV 411 (609)
Q Consensus 346 dg~~Lasgs~dg------~I~iwd~~~~~~--~~~l~~h~~~V~~l~~~~~~L~sgs~d-g-----~I~iwd~~~~~~~~ 411 (609)
.+..+++|+.++ .+..||..++.- ...+......+.....++.+.++|+.| | ++..||.++.. -
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ--W 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc--e
Confidence 456777777763 578899887633 233333334445555588899999998 3 46778887653 1
Q ss_pred EEEccCCCCeEEEEEc-cCCCEEEEEeCCC-----cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEE
Q psy4876 412 ALLQNHTQEVCGLKWS-PDGRYLASGGNDN-----LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 412 ~~~~~h~~~V~~l~~s-pdg~~lasgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 485 (609)
.....-...-..+... -+|.+.|+||.|| .|-.||..+.+- ..+..+.. .........-+..+.++|
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W----~~va~m~~---~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKW----TPVAPMLT---RRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcc----cccCCCCc---ceeeeEEEEECCEEEEEc
Confidence 1111111111111111 2688889999886 477888876532 22222221 223333333355788887
Q ss_pred eccCC----CeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCC----CeEEEEECCCCce--EEEEeCCCC
Q psy4876 486 GGTAD----RHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQ----NQLIIWKYPSLVK--VAELHGHSA 555 (609)
Q Consensus 486 gGs~D----g~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~d----g~I~Iwd~~~~~~--~~~l~~h~~ 555 (609)
|.+.. ..+..||..+++-...-.....-......--+..|++++|+++ .+|..||..+.+- +..+.....
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs 514 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS 514 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc
Confidence 63222 4578888887654332221111111111122344555544332 2377788765433 322222223
Q ss_pred CEEEEEEeCCCCEEEEEECCC-----CEEEEEcCCC
Q psy4876 556 RVLNLAMSPDETTVLSAGADE-----TLRLWKIFEK 586 (609)
Q Consensus 556 ~V~~l~~spdg~~L~s~s~Dg-----~I~iWdl~~~ 586 (609)
.+..+.+ ++...+.|+.|| +|..||..+.
T Consensus 515 ~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 515 AVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred cccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 3322333 677778888876 4556655443
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.23 Score=55.76 Aligned_cols=180 Identities=14% Similarity=0.121 Sum_probs=98.7
Q ss_pred ceEEEEe--cCCEEEEEe------cCC--eEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCC---------
Q psy4876 379 RVGALAW--NTYILSSGS------RCG--NIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGND--------- 439 (609)
Q Consensus 379 ~V~~l~~--~~~~L~sgs------~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~D--------- 439 (609)
.+...+. ++..++..- .|. .|.+++... .......+. ....-.|+|||..|++....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG--VAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC--cceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 4555555 566655544 233 455556532 222223332 37888999998887776533
Q ss_pred ---CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEE---EECCCCce-e---EEEcC
Q psy4876 440 ---NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYF---WNVSSGAC-L---DSIDT 509 (609)
Q Consensus 440 ---g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~i---wd~~t~~~-~---~~~~~ 509 (609)
+.+++.+++.+ .... ...+.|..+.|+|||..+++.. ++.|++ -....|.. + ..+..
T Consensus 427 ~~~gql~~~~vd~g------e~~~---~~~g~Issl~wSpDG~RiA~i~----~g~v~Va~Vvr~~~G~~~l~~~~~l~~ 493 (591)
T PRK13616 427 PATGQLARTPVDAS------AVAS---RVPGPISELQLSRDGVRAAMII----GGKVYLAVVEQTEDGQYALTNPREVGP 493 (591)
T ss_pred CCCceEEEEeccCc------hhhh---ccCCCcCeEEECCCCCEEEEEE----CCEEEEEEEEeCCCCceeecccEEeec
Confidence 23333344333 1111 2345799999999999888875 467777 45445541 1 11222
Q ss_pred --CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC--CCCCEEEEEEeCCCCEEEEEECCCCEE
Q psy4876 510 --KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG--HSARVLNLAMSPDETTVLSAGADETLR 579 (609)
Q Consensus 510 --~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~L~s~s~Dg~I~ 579 (609)
...+.++.|..++.+++. ....+..+...++.... ...+.+ ....+..|+=+++ .|+....++.+.
T Consensus 494 ~l~~~~~~l~W~~~~~L~V~-~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 494 GLGDTAVSLDWRTGDSLVVG-RSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred ccCCccccceEecCCEEEEE-ecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 224688999999996543 32233334444443222 112222 2566777777763 455666666443
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.67 E-value=1.2 Score=47.61 Aligned_cols=273 Identities=11% Similarity=0.149 Sum_probs=147.9
Q ss_pred CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEcc-----CCCEEEEEeC
Q psy4876 281 NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQ-----EGYMLGVGTS 355 (609)
Q Consensus 281 ~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~sp-----dg~~Lasgs~ 355 (609)
.++.|+..|.++||+...... .....+.+.+-..+|..|+.-. +...||+-.
T Consensus 39 ~IivGS~~G~LrIy~P~~~~~----------------------~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLh- 95 (418)
T PF14727_consen 39 KIIVGSYSGILRIYDPSGNEF----------------------QPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLH- 95 (418)
T ss_pred EEEEeccccEEEEEccCCCCC----------------------CCccEEEEEecCCcEEEEEeccccCCCCcceEEEec-
Confidence 388899999999999865211 1113444545567888877643 235666543
Q ss_pred CCeEEEEeCCC--Ce-------eEEEecCCCCc--eEEE---Ee---c-CCEEEEEecCCeEEEEEcCCCCeeEEEEccC
Q psy4876 356 LGTVQLWDVSA--KK-------KCRTMDGHDVR--VGAL---AW---N-TYILSSGSRCGNIVHHDVRSRDHKVALLQNH 417 (609)
Q Consensus 356 dg~I~iwd~~~--~~-------~~~~l~~h~~~--V~~l---~~---~-~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h 417 (609)
-..+.||.+.. +. .+..+..|.-. ...+ .| . .+.+++-+.||.+.+++-+.-. ....+..
T Consensus 96 P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-f~~~lp~- 173 (418)
T PF14727_consen 96 PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-FSRFLPD- 173 (418)
T ss_pred CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE-EEEEcCC-
Confidence 46788887731 11 12222223221 2222 23 2 3788889999999999876531 1222222
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC-----------------CCccceEeecCCcc--cEEEEEEcCCC
Q psy4876 418 TQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHT-----------------FSTQPIHSLSRHQA--AVKAIAWCPWS 478 (609)
Q Consensus 418 ~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~-----------------~~~~~~~~~~~h~~--~V~~l~~sp~~ 478 (609)
.--...+++.+.-..|++++.+..|..|........ ....+-.++.-.+. .|..+.++...
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~ 253 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSE 253 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCC
Confidence 223345678888888999998888888864321100 00111122221111 22333343344
Q ss_pred CcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEE-EEcC----CCC---eEEEEEecCCCeEEEEECCCCceEEEE
Q psy4876 479 PNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCAL-LWNS----DYK---ELVSAHGFAQNQLIIWKYPSLVKVAEL 550 (609)
Q Consensus 479 ~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl-~~s~----~g~---~l~~~sG~~dg~I~Iwd~~~~~~~~~l 550 (609)
..+++.| .+.+.+.+- +|......+......++ .|.. .+. .+++ +..++++.||.-.+. +..-
T Consensus 254 ~~IvvLg----er~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV--~t~t~~LlVy~d~~L--~WsA 324 (418)
T PF14727_consen 254 SDIVVLG----ERSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLV--GTHTGTLLVYEDTTL--VWSA 324 (418)
T ss_pred ceEEEEe----cceEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEE--EecCCeEEEEeCCeE--EEec
Confidence 4566665 678888876 46665555544422222 2222 222 2444 447999999874332 2222
Q ss_pred eCCCCCEEEEEE---eCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 551 HGHSARVLNLAM---SPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 551 ~~h~~~V~~l~~---spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
.....+| ++.. ..-...|++-+.+|.|.+-=+-+...
T Consensus 325 ~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 325 QLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred CCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence 2222232 3332 22345788888899998876655543
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.032 Score=59.16 Aligned_cols=143 Identities=13% Similarity=0.190 Sum_probs=98.4
Q ss_pred cCCCEEEE-EeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---------CCEEEEEecCCeEEEEEcCCCCe-eEEE
Q psy4876 345 QEGYMLGV-GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---------TYILSSGSRCGNIVHHDVRSRDH-KVAL 413 (609)
Q Consensus 345 pdg~~Las-gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---------~~~L~sgs~dg~I~iwd~~~~~~-~~~~ 413 (609)
.+.++|+. +.....++=.|++.|+.+....-|.. |.-+.+. ...-+.|-.+..|.-||.+.... .+..
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 34444443 44445688889999999999887766 5555552 12334566788899999986543 2222
Q ss_pred EccC----CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC
Q psy4876 414 LQNH----TQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA 489 (609)
Q Consensus 414 ~~~h----~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~ 489 (609)
.++| .....|.+-..+| ++|+|+.+|.|++||-- +. .....+.+-..+|+.|..+.+|.++|+++
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~~-----~AKTAlPgLG~~I~hVdvtadGKwil~Tc---- 490 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRI-GR-----RAKTALPGLGDAIKHVDVTADGKWILATC---- 490 (644)
T ss_pred eeccccccccccceeeecCCc-eEEEeecCCcEEeehhh-hh-----hhhhcccccCCceeeEEeeccCcEEEEec----
Confidence 3333 2334555555566 89999999999999973 31 33345566778999999999999999986
Q ss_pred CCeEEEEECC
Q psy4876 490 DRHIYFWNVS 499 (609)
Q Consensus 490 Dg~I~iwd~~ 499 (609)
+..+.+-++.
T Consensus 491 ~tyLlLi~t~ 500 (644)
T KOG2395|consen 491 KTYLLLIDTL 500 (644)
T ss_pred ccEEEEEEEe
Confidence 7788877764
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=96.60 E-value=2 Score=49.35 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=76.9
Q ss_pred EEEEEcCCCCcEEEEEec--------cCCCeEEEEECCCCcee---EEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEE
Q psy4876 470 KAIAWCPWSPNVLASGGG--------TADRHIYFWNVSSGACL---DSIDTKSQVCALLWNSDYKELVSAHGFAQNQLII 538 (609)
Q Consensus 470 ~~l~~sp~~~~llasggG--------s~Dg~I~iwd~~t~~~~---~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~I 538 (609)
.++.|..|....+++|.| -..|.|.+|.+..+..+ .+....+.+.++.- -+|++++. -..+|++
T Consensus 778 ~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~----In~~vrL 852 (1096)
T KOG1897|consen 778 ISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAG----INQSVRL 852 (1096)
T ss_pred eeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEe----cCcEEEE
Confidence 344577775667777642 23578888887763333 23333444544432 24566655 3679999
Q ss_pred EECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 539 WKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 539 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
|++.+.+.+..-..|...+..+...-.|..++.|..-+.+.+-.....+
T Consensus 853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred EEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 9999887777667788889999999899999999988888776655444
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.56 E-value=1.3 Score=46.50 Aligned_cols=229 Identities=13% Similarity=0.124 Sum_probs=113.9
Q ss_pred CeEEEEEccCCCEEEEEeC-CC--eEEEEeCCCCeeEEEecCCCC-c-eEEEEecCCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 337 NVCSVAWIQEGYMLGVGTS-LG--TVQLWDVSAKKKCRTMDGHDV-R-VGALAWNTYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~-dg--~I~iwd~~~~~~~~~l~~h~~-~-V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
+.+.=+|.+||+.|+.++. || .+.+.|+.+++..+...+-.. . -..++-..+.++-......|.-.|+.+.+ ..
T Consensus 37 YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e-~~ 115 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE-ER 115 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EE
T ss_pred eecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc-EE
Confidence 3344567889966665554 44 577778888776555443211 1 23333345665555555688888998874 33
Q ss_pred EEEccCCCCeEEEEEc--cCCCEEEEEeC----------------------CCcEEEEeCCCCCCCCCccceEeecCCcc
Q psy4876 412 ALLQNHTQEVCGLKWS--PDGRYLASGGN----------------------DNLLNIWSGVPGQHTFSTQPIHSLSRHQA 467 (609)
Q Consensus 412 ~~~~~h~~~V~~l~~s--pdg~~lasgs~----------------------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 467 (609)
..+......+-...|. .|+..++-.-. ...|...|+.++ + ...+.....
T Consensus 116 ~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG------~-~~~v~~~~~ 188 (386)
T PF14583_consen 116 VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG------E-RKVVFEDTD 188 (386)
T ss_dssp EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---------EEEEEEESS
T ss_pred EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC------c-eeEEEecCc
Confidence 4444455555445664 35665543211 134666677776 2 233333456
Q ss_pred cEEEEEEcCCCCcEEEEEe-ccCCCe-EEEEECC-CCceeEEEcCC---CCeEEEEEcCCCCeEEEEEecC---CCeEEE
Q psy4876 468 AVKAIAWCPWSPNVLASGG-GTADRH-IYFWNVS-SGACLDSIDTK---SQVCALLWNSDYKELVSAHGFA---QNQLII 538 (609)
Q Consensus 468 ~V~~l~~sp~~~~llasgg-Gs~Dg~-I~iwd~~-t~~~~~~~~~~---~~v~sl~~s~~g~~l~~~sG~~---dg~I~I 538 (609)
.+..+.|+|..+.+++-|. |-.+.. -+||-++ .|.....+..+ ..+..=-|.+||..+....... +..|.-
T Consensus 189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~ 268 (386)
T PF14583_consen 189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAG 268 (386)
T ss_dssp -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEE
T ss_pred cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEe
Confidence 7888999999998888763 222331 2555544 23333333322 2455667899999887654323 335677
Q ss_pred EECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECC
Q psy4876 539 WKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGAD 575 (609)
Q Consensus 539 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D 575 (609)
+|..+++...... ......+-.++||++++-=|.|
T Consensus 269 ~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 269 YDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp E-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred eCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCC
Confidence 7888776543222 2245566778999988765554
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.95 Score=44.97 Aligned_cols=192 Identities=13% Similarity=0.100 Sum_probs=116.4
Q ss_pred ccccCCccCCceeEEEEEecCCCeEE--EEcCC--eEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecC
Q psy4876 259 RILDAPEIQNDYYLNLIDWSHFNVLA--VALGG--SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEG 334 (609)
Q Consensus 259 ~il~ap~~~~~~~v~~l~wsp~~lla--~s~dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h 334 (609)
.++..-......+-..+.|..++.+- .|.-| .|+.+|+.+ ++......++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t-------------------------g~~~~~~~l~~ 88 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLET-------------------------GKVLQSVPLPP 88 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTT-------------------------SSEEEEEE-TT
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCC-------------------------CcEEEEEECCc
Confidence 34433333345667888886666443 33333 799999998 76666666653
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEE
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALL 414 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~ 414 (609)
.----.++.. +++.....-.++...+||..+.+.+.++.- ...=+.++.++..|+.......|+++|..+.. ....+
T Consensus 89 ~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~-~~~~i 165 (264)
T PF05096_consen 89 RYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTSDGKRLIMSDGSSRLYFLDPETFK-EVRTI 165 (264)
T ss_dssp T--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEECSSCEEEE-SSSEEEEE-TTT-S-EEEEE
T ss_pred cccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEEcCCCEEEEECCccceEEECCcccc-eEEEE
Confidence 2222233333 234444566789999999999999888863 45667888888888888888899999987654 33333
Q ss_pred cc--CC---CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec---------------CCcccEEEEEE
Q psy4876 415 QN--HT---QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS---------------RHQAAVKAIAW 474 (609)
Q Consensus 415 ~~--h~---~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~---------------~h~~~V~~l~~ 474 (609)
.- .. ..++.+.|- +|...|=.=....|...|..+|.. +..+. ....-.+.|||
T Consensus 166 ~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V------~~~iDls~L~~~~~~~~~~~~~~dVLNGIAy 238 (264)
T PF05096_consen 166 QVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKV------VGWIDLSGLRPEVGRDKSRQPDDDVLNGIAY 238 (264)
T ss_dssp E-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BE------EEEEE-HHHHHHHTSTTST--TTS-EEEEEE
T ss_pred EEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeE------EEEEEhhHhhhcccccccccccCCeeEeEeE
Confidence 21 22 245566775 676666666667788888888832 22210 01345789999
Q ss_pred cCCCCcEEEEE
Q psy4876 475 CPWSPNVLASG 485 (609)
Q Consensus 475 sp~~~~llasg 485 (609)
+|....++++|
T Consensus 239 d~~~~~l~vTG 249 (264)
T PF05096_consen 239 DPETDRLFVTG 249 (264)
T ss_dssp ETTTTEEEEEE
T ss_pred eCCCCEEEEEe
Confidence 99999999997
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.029 Score=64.08 Aligned_cols=92 Identities=23% Similarity=0.327 Sum_probs=70.6
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQ 360 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~ 360 (609)
+++++..|.|-..|+.. .+..+..-+ ..++|++++|+.+|..++.|-.+|.|.
T Consensus 102 ivi~Ts~ghvl~~d~~~--------------------------nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~ 155 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTG--------------------------NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVT 155 (1206)
T ss_pred EEEEcCchhhhhhhhhc--------------------------ccchhhcCCccCCcceeeEecCCCceeccccCCCcEE
Confidence 44566667888877754 222222223 578999999999999999999999999
Q ss_pred EEeCCCCeeEEEecCCCCceEEEEe-----cCCEEEEEecCCeE
Q psy4876 361 LWDVSAKKKCRTMDGHDVRVGALAW-----NTYILSSGSRCGNI 399 (609)
Q Consensus 361 iwd~~~~~~~~~l~~h~~~V~~l~~-----~~~~L~sgs~dg~I 399 (609)
+||+..++.++.+..|..++..+-+ .+..++++...|.+
T Consensus 156 v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 156 VWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred EEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCce
Confidence 9999999999999888877766655 24568888888863
|
|
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.031 Score=64.20 Aligned_cols=147 Identities=13% Similarity=0.116 Sum_probs=91.7
Q ss_pred CCCeEEEEEccCCCEEEEEe--CCCeEEEEeCCCCeeE-----EEec------CCCCceEEEEecC---CEEEEEecCCe
Q psy4876 335 NENVCSVAWIQEGYMLGVGT--SLGTVQLWDVSAKKKC-----RTMD------GHDVRVGALAWNT---YILSSGSRCGN 398 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs--~dg~I~iwd~~~~~~~-----~~l~------~h~~~V~~l~~~~---~~L~sgs~dg~ 398 (609)
.-.|..+...+|+...++.. .+-.|..||+.+-..- +-+. ....-+.++.|++ ...+....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 34566666777775555433 3236888998753211 1111 2234456778864 45667778899
Q ss_pred EEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-CcccEEEEEEcCC
Q psy4876 399 IVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-HQAAVKAIAWCPW 477 (609)
Q Consensus 399 I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~ 477 (609)
|.+..+......+..+ .....+++++|+|.|+.++.|-+.|++.-|...-... ..+..... ....|.+|+|-..
T Consensus 180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik----~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK----SEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeeccccee----ecccCCCcCCCcceeEEEEecc
Confidence 9888776543333332 3456789999999999999999999998886543200 01111111 1467999999887
Q ss_pred CCcEEEEEe
Q psy4876 478 SPNVLASGG 486 (609)
Q Consensus 478 ~~~llasgg 486 (609)
..++++.+.
T Consensus 255 ~eflvvy~n 263 (1405)
T KOG3630|consen 255 QEFLVVYGN 263 (1405)
T ss_pred eeEEEEecc
Confidence 766666553
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.51 E-value=1.3 Score=46.13 Aligned_cols=235 Identities=16% Similarity=0.180 Sum_probs=122.0
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCee---EEEe----cCCCCceEEEEecC-----CEEEEEecC--------
Q psy4876 337 NVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKK---CRTM----DGHDVRVGALAWNT-----YILSSGSRC-------- 396 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~---~~~l----~~h~~~V~~l~~~~-----~~L~sgs~d-------- 396 (609)
..++|+|.|||++++ +...|.|++++ ..+.. +..+ .........+++++ ..|+.....
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 467899999997766 56689999999 44443 3333 23456778899965 344443331
Q ss_pred -CeEEEEEcCCCC-------eeEEEEcc---CCCCeEEEEEccCCCEEEEEeCCC-------------cEEEEeCCCCCC
Q psy4876 397 -GNIVHHDVRSRD-------HKVALLQN---HTQEVCGLKWSPDGRYLASGGNDN-------------LLNIWSGVPGQH 452 (609)
Q Consensus 397 -g~I~iwd~~~~~-------~~~~~~~~---h~~~V~~l~~spdg~~lasgs~Dg-------------~I~iwd~~~~~~ 452 (609)
..|.-|...... ..+..+.. ....-..|+|.|||.+.++.+..+ .|.-.+.... .
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~-~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS-I 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS-B
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCc-C
Confidence 235545544331 11122222 234567799999997766655432 2333333211 0
Q ss_pred CCC---------ccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC----------------------
Q psy4876 453 TFS---------TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG---------------------- 501 (609)
Q Consensus 453 ~~~---------~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~---------------------- 501 (609)
... ...+. -.++. -...++|+|....|+++-.| .+..=.|.-+..|
T Consensus 160 p~dnP~~~~~~~~~~i~-A~GlR-N~~~~~~d~~tg~l~~~d~G-~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIY-AYGLR-NPFGLAFDPNTGRLWAADNG-PDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp -TTSTTTTSTTSTTTEE-EE--S-EEEEEEEETTTTEEEEEEE--SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred CCCCccccCCCceEEEE-EeCCC-ccccEEEECCCCcEEEEccC-CCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 000 00111 11222 24689999984466665443 2222222212211
Q ss_pred -------ceeEEEcCCCCeEEEEEcCC-------CCeEEEEEecCCCeEEEEECCCCceEE---EE-eCCCCCEEEEEEe
Q psy4876 502 -------ACLDSIDTKSQVCALLWNSD-------YKELVSAHGFAQNQLIIWKYPSLVKVA---EL-HGHSARVLNLAMS 563 (609)
Q Consensus 502 -------~~~~~~~~~~~v~sl~~s~~-------g~~l~~~sG~~dg~I~Iwd~~~~~~~~---~l-~~h~~~V~~l~~s 563 (609)
.++..+..+..+..+.|... |.+++. ....+.|....+.....+. .+ .....++.+|++.
T Consensus 237 ~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~ 314 (331)
T PF07995_consen 237 PSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVA--DYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQG 314 (331)
T ss_dssp SS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEE--ETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEE
T ss_pred cCCCCcCccceeecCccccCceEEECCccCccccCcEEEe--cCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEc
Confidence 12333445566777777644 334444 3456778887776553332 22 2344589999999
Q ss_pred CCCCEEEEEECCCCEE
Q psy4876 564 PDETTVLSAGADETLR 579 (609)
Q Consensus 564 pdg~~L~s~s~Dg~I~ 579 (609)
|||.++++-..+|.|.
T Consensus 315 pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 315 PDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTSEEEEEE-TTTTEE
T ss_pred CCCeEEEEECCCCeEe
Confidence 9999999888888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.46 Score=50.20 Aligned_cols=193 Identities=15% Similarity=0.164 Sum_probs=90.8
Q ss_pred CEEEEEe-cCCeEEEEEcCCCC---eeEEEEcc---CC----CCeEEEEEccCCCEEEEEeC------CCcEEEEeCCCC
Q psy4876 388 YILSSGS-RCGNIVHHDVRSRD---HKVALLQN---HT----QEVCGLKWSPDGRYLASGGN------DNLLNIWSGVPG 450 (609)
Q Consensus 388 ~~L~sgs-~dg~I~iwd~~~~~---~~~~~~~~---h~----~~V~~l~~spdg~~lasgs~------Dg~I~iwd~~~~ 450 (609)
++|+..+ .++.|+|.|+.+.. ...+++.. +. .....+-.-|+|++++++-. -|-+.+.|-++.
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 4555544 66778888876432 22333321 11 11223344578888877532 245778887765
Q ss_pred CCCCCccceEeecCC---cccEEEEEEcCCCCcEEEEEe------------------ccCCCeEEEEECCCCceeEEEcC
Q psy4876 451 QHTFSTQPIHSLSRH---QAAVKAIAWCPWSPNVLASGG------------------GTADRHIYFWNVSSGACLDSIDT 509 (609)
Q Consensus 451 ~~~~~~~~~~~~~~h---~~~V~~l~~sp~~~~llasgg------------------Gs~Dg~I~iwd~~t~~~~~~~~~ 509 (609)
......... ...-..+-|.|.. +++++.. +....++.+||+.+.+.+++++.
T Consensus 168 ------~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL 240 (461)
T PF05694_consen 168 ------EVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL 240 (461)
T ss_dssp -------EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred ------cccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence 344444332 2234677788855 4555542 23467899999999999999987
Q ss_pred CC---CeEEEEEc--CCCCeEEEEEecCCCeEEEE-ECCCC----ceEEEEeCC-----------------CCCEEEEEE
Q psy4876 510 KS---QVCALLWN--SDYKELVSAHGFAQNQLIIW-KYPSL----VKVAELHGH-----------------SARVLNLAM 562 (609)
Q Consensus 510 ~~---~v~sl~~s--~~g~~l~~~sG~~dg~I~Iw-d~~~~----~~~~~l~~h-----------------~~~V~~l~~ 562 (609)
.. -...+.|. |+..+-++++. -..+|..| ....+ +++..+..- ..-|++|.+
T Consensus 241 g~~g~~pLEvRflH~P~~~~gFvg~a-Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 241 GEEGQMPLEVRFLHDPDANYGFVGCA-LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE---EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred CCCCCceEEEEecCCCCccceEEEEe-ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 63 35566665 45555555444 23444444 33333 223333211 234799999
Q ss_pred eCCCCEEEEEE-CCCCEEEEEcCCCcc
Q psy4876 563 SPDETTVLSAG-ADETLRLWKIFEKVK 588 (609)
Q Consensus 563 spdg~~L~s~s-~Dg~I~iWdl~~~~~ 588 (609)
|.|.++|...+ .+|.||.||+.....
T Consensus 320 SlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 320 SLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp -TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred ccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 99999997766 489999999988654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=2.9 Score=48.15 Aligned_cols=241 Identities=9% Similarity=0.065 Sum_probs=118.6
Q ss_pred CeEEEEEccCCCEEEEEeCC-----CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEE-ecC-----CeEEEEE
Q psy4876 337 NVCSVAWIQEGYMLGVGTSL-----GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSG-SRC-----GNIVHHD 403 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~d-----g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sg-s~d-----g~I~iwd 403 (609)
.+..+.|+|||++|+.+... ..|++.|+.++..+...-.... ..++| +++.|+.. ..+ ..|+.|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46678999999999876443 3688999988764322211111 45888 55544443 322 3688888
Q ss_pred cCCCCe-eEEEEccCCCCeE-EEEEccCCCEEEEEeC---CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC
Q psy4876 404 VRSRDH-KVALLQNHTQEVC-GLKWSPDGRYLASGGN---DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS 478 (609)
Q Consensus 404 ~~~~~~-~~~~~~~h~~~V~-~l~~spdg~~lasgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 478 (609)
+.+... ....+........ .+..+.++++++..+. ++.+.+|+...... .+...+.........+. +..+
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~ 280 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA----EPFVFLPRRKDHEYSLD-HYQH 280 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC----CceEEEECCCCCEEEEE-eCCC
Confidence 887631 2233332222233 3333448887665543 45788988543211 22211211122222222 2223
Q ss_pred CcEEEEEeccCCCeEEEEECC-CCceeEEEcC--CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceEEEEe-CC
Q psy4876 479 PNVLASGGGTADRHIYFWNVS-SGACLDSIDT--KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS-LVKVAELH-GH 553 (609)
Q Consensus 479 ~~llasggGs~Dg~I~iwd~~-t~~~~~~~~~--~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~-~~~~~~l~-~h 553 (609)
..++.+..+.....|...++. .++....+.. ...+..+.+. ++.|+.. ...++.-+++-+.. +..+..+. ..
T Consensus 281 ~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~-~~~~g~~~l~~~~~~~~~~~~l~~~~ 357 (686)
T PRK10115 281 RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVE-ERQRGLTSLRQINRKTREVIGIAFDD 357 (686)
T ss_pred EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEE-EEeCCEEEEEEEcCCCCceEEecCCC
Confidence 233333222233455555655 2322233333 2367778877 3344443 23566544443332 22344443 22
Q ss_pred CCCEEEEEEe--CCCC-EEEEEEC---CCCEEEEEcCCCc
Q psy4876 554 SARVLNLAMS--PDET-TVLSAGA---DETLRLWKIFEKV 587 (609)
Q Consensus 554 ~~~V~~l~~s--pdg~-~L~s~s~---Dg~I~iWdl~~~~ 587 (609)
...+..+.++ +++. ++++.+. -+.+..+|+.++.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 358 PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 2233334444 3433 4444443 3677778876653
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.14 Score=57.30 Aligned_cols=146 Identities=13% Similarity=0.113 Sum_probs=79.2
Q ss_pred CCCEEEEEeCCC-----eEEEEeCCCCeeE--EEecCCCCceEEEEecCCEEEEEecCC---------------------
Q psy4876 346 EGYMLGVGTSLG-----TVQLWDVSAKKKC--RTMDGHDVRVGALAWNTYILSSGSRCG--------------------- 397 (609)
Q Consensus 346 dg~~Lasgs~dg-----~I~iwd~~~~~~~--~~l~~h~~~V~~l~~~~~~L~sgs~dg--------------------- 397 (609)
+|+..++|+.++ .+..||..+.+-. ..+.........+..++.+.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 430 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHS 430 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccc
Confidence 577777787654 4888998875422 223222233344566888888888653
Q ss_pred --eEEEEEcCCCCe-eEEEEccCCCCeEEEEEccCCCEEEEEeCC------CcEEEEeCCC-CCCCCCccceEeecCCcc
Q psy4876 398 --NIVHHDVRSRDH-KVALLQNHTQEVCGLKWSPDGRYLASGGND------NLLNIWSGVP-GQHTFSTQPIHSLSRHQA 467 (609)
Q Consensus 398 --~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spdg~~lasgs~D------g~I~iwd~~~-~~~~~~~~~~~~~~~h~~ 467 (609)
.+..||..+..- .+..+...... .+++ .-+|++.+.||.+ ..|..||..+ .+- ..+..+.....
T Consensus 431 ~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W----~~~~~m~~~r~ 504 (557)
T PHA02713 431 SNKVIRYDTVNNIWETLPNFWTGTIR-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW----ELITTTESRLS 504 (557)
T ss_pred cceEEEECCCCCeEeecCCCCccccc-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCe----eEccccCcccc
Confidence 466788776421 11111111111 1222 2356777777754 2467899886 321 23333333333
Q ss_pred cEEEEEEcCCCCcEEEEEeccCCC--eEEEEECCCCc
Q psy4876 468 AVKAIAWCPWSPNVLASGGGTADR--HIYFWNVSSGA 502 (609)
Q Consensus 468 ~V~~l~~sp~~~~llasggGs~Dg--~I~iwd~~t~~ 502 (609)
....+.+ +..++++|| .++ .+..||..+.+
T Consensus 505 ~~~~~~~---~~~iyv~Gg--~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 505 ALHTILH---DNTIMMLHC--YESYMLQDTFNVYTYE 536 (557)
T ss_pred cceeEEE---CCEEEEEee--ecceeehhhcCccccc
Confidence 3333333 447888886 555 66777776654
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.75 Score=45.94 Aligned_cols=180 Identities=16% Similarity=0.146 Sum_probs=117.0
Q ss_pred CCCCCccccCCCccccccCCccCCceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCcccccccccccc
Q psy4876 245 GSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQD 322 (609)
Q Consensus 245 ~~~~~~r~i~~~p~~il~ap~~~~~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (609)
..+...++++..+.++-..|-....-.|.++.|+|+. ++++.....-.||=...
T Consensus 61 ~~r~~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~------------------------ 116 (316)
T COG3204 61 LSRYIARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKE------------------------ 116 (316)
T ss_pred ccchhhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecC------------------------
Confidence 3444677888888888777665556669999999984 77777766666665444
Q ss_pred ccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEE-------ec--CC-CCceEEEEec--CCEE
Q psy4876 323 NRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRT-------MD--GH-DVRVGALAWN--TYIL 390 (609)
Q Consensus 323 ~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~-------l~--~h-~~~V~~l~~~--~~~L 390 (609)
|++.....+..-...-.+.|..+|.++++--.++.+.++.+..+..+.. +. .+ ......++|+ .+.|
T Consensus 117 -GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l 195 (316)
T COG3204 117 -GDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRL 195 (316)
T ss_pred -CceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceE
Confidence 6655555554444556788888888888888888888887765532211 11 12 5677889995 4566
Q ss_pred EEEecCCeEEEEEcCCCCe--eEEEEccCC-------CCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCC
Q psy4876 391 SSGSRCGNIVHHDVRSRDH--KVALLQNHT-------QEVCGLKWSP-DGRYLASGGNDNLLNIWSGVP 449 (609)
Q Consensus 391 ~sgs~dg~I~iwd~~~~~~--~~~~~~~h~-------~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~ 449 (609)
+.+-+-.-+.||.+..... .+.....++ ..|.++.|++ .+.+|+-+.+++.|.-.|...
T Consensus 196 ~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 196 FVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred EEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 6666655666665553321 111111222 3577888887 566777777788888887764
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.024 Score=40.50 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=30.4
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCee
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKK 369 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~ 369 (609)
....|.+++|+|..++||+|+.+|.|.|+.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3467999999999999999999999999998 4443
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.018 Score=54.95 Aligned_cols=102 Identities=16% Similarity=0.207 Sum_probs=64.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCC-eeEEEecCCCCceEEEEe---cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCC-CCe
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAK-KKCRTMDGHDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHT-QEV 421 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~-~~V 421 (609)
+..|++|+.+|.|.+|...-. ............|.++-. ++.+.++++.||.|+.|++.-. ..+.....|+ ..+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN-KVLGYVGQHNFESG 148 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC-ceeeeeccccCCCc
Confidence 467889999999999987621 111111112223333333 3568899999999999999865 3455555566 455
Q ss_pred EEEEEccCCCEEEEE--eCCCcEEEEeCCC
Q psy4876 422 CGLKWSPDGRYLASG--GNDNLLNIWSGVP 449 (609)
Q Consensus 422 ~~l~~spdg~~lasg--s~Dg~I~iwd~~~ 449 (609)
..+..+..++.++.+ +.|..++.|++..
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchhh
Confidence 555555555666666 6666677776654
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.2 Score=54.27 Aligned_cols=152 Identities=20% Similarity=0.314 Sum_probs=88.5
Q ss_pred CCceEEEEe-cCCEEEEEe---cCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccC----C-CEEEEEeCCCcEEEEeC
Q psy4876 377 DVRVGALAW-NTYILSSGS---RCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPD----G-RYLASGGNDNLLNIWSG 447 (609)
Q Consensus 377 ~~~V~~l~~-~~~~L~sgs---~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd----g-~~lasgs~Dg~I~iwd~ 447 (609)
-.+|..++| ||+.++-.. .+|.+++=|-. .+ +.-..|.++.|.|- - .+||+- ....|.||.+
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~----vi----GqFEhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL 89 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSK----VI----GQFEHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQL 89 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCCcc----Ee----eccceeeeeeecCcccCCCCceEEEe-ccceEEEEEe
Confidence 357889999 776554332 23444433221 22 23346999999994 2 355554 4588999998
Q ss_pred CCCCCCCCccceEeecCC---ccc--EEEEEEcCCCCcEEEEEeccCCCeEEEEECCC--CceeEEEcCCCCeEEEEEcC
Q psy4876 448 VPGQHTFSTQPIHSLSRH---QAA--VKAIAWCPWSPNVLASGGGTADRHIYFWNVSS--GACLDSIDTKSQVCALLWNS 520 (609)
Q Consensus 448 ~~~~~~~~~~~~~~~~~h---~~~--V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t--~~~~~~~~~~~~v~sl~~s~ 520 (609)
....... .+.+.....+ .-+ -..+.|||... +|++-. ....-.+++++. ......+...+.|.+.+|.+
T Consensus 90 ~~s~~e~-~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT--~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~ 165 (671)
T PF15390_consen 90 CPSTTER-NKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLT--ARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK 165 (671)
T ss_pred ccCcccc-ccceeeeeeeccCCcccCCCcccccCCCc-eEEEEe--cCceeEeeeeeeCCceEEEeccCCceEEEEEecC
Confidence 6321111 1222111111 111 24578999775 444432 233334556653 33445567788999999999
Q ss_pred CCCeEEEEEecCCCeEEEEECC
Q psy4876 521 DYKELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 521 ~g~~l~~~sG~~dg~I~Iwd~~ 542 (609)
||+.|+++.| ..=.-+|||-.
T Consensus 166 DG~RLVVAvG-SsLHSyiWd~~ 186 (671)
T PF15390_consen 166 DGQRLVVAVG-SSLHSYIWDSA 186 (671)
T ss_pred cCCEEEEEeC-CeEEEEEecCc
Confidence 9999999876 34556788853
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.72 E-value=2.9 Score=42.80 Aligned_cols=233 Identities=14% Similarity=0.183 Sum_probs=107.1
Q ss_pred ceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeee-cCCCCeEEEEEccCC
Q psy4876 269 DYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL-EGNENVCSVAWIQEG 347 (609)
Q Consensus 269 ~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~h~~~V~~v~~spdg 347 (609)
++.++.|.+..+..++++..+.|..- ...+ ...+.+..- .-.+....+....++
T Consensus 61 ~~~l~~I~f~~~~g~ivG~~g~ll~T-~DgG------------------------~tW~~v~l~~~lpgs~~~i~~l~~~ 115 (302)
T PF14870_consen 61 DYHLNSISFDGNEGWIVGEPGLLLHT-TDGG------------------------KTWERVPLSSKLPGSPFGITALGDG 115 (302)
T ss_dssp --EEEEEEEETTEEEEEEETTEEEEE-SSTT------------------------SS-EE----TT-SS-EEEEEEEETT
T ss_pred eeeEEEEEecCCceEEEcCCceEEEe-cCCC------------------------CCcEEeecCCCCCCCeeEEEEcCCC
Confidence 45678888876655556666543332 2221 233333211 112333444444444
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEE-EecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCR-TMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGL 424 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 424 (609)
..++ ++..|.|..= .+.|+.-. ....-...+..+.- ++.+++++..-..+.-||--... -...-..-...|..|
T Consensus 116 ~~~l-~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r~~~~riq~~ 192 (302)
T PF14870_consen 116 SAEL-AGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNRNSSRRIQSM 192 (302)
T ss_dssp EEEE-EETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEE
T ss_pred cEEE-EcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEccCccceehhc
Confidence 3333 3444544321 22233322 23334456666665 57777777665555677765432 222233356889999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee
Q psy4876 425 KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504 (609)
Q Consensus 425 ~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~ 504 (609)
.|.|++.+.+.+ ..|.|+.=+.......+. +.+..+....-.+..++|.+++ .+.++|+ .|.+ +.....|+.-
T Consensus 193 gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~-~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg---~G~l-~~S~DgGktW 265 (302)
T PF14870_consen 193 GFSPDGNLWMLA-RGGQIQFSDDPDDGETWS-EPIIPIKTNGYGILDLAYRPPN-EIWAVGG---SGTL-LVSTDGGKTW 265 (302)
T ss_dssp EE-TTS-EEEEE-TTTEEEEEE-TTEEEEE----B-TTSS--S-EEEEEESSSS--EEEEES---TT-E-EEESSTTSS-
T ss_pred eecCCCCEEEEe-CCcEEEEccCCCCccccc-cccCCcccCceeeEEEEecCCC-CEEEEeC---CccE-EEeCCCCccc
Confidence 999998876654 788888877221100000 1111111223347899999875 6777764 4533 3445556554
Q ss_pred EEEcC----CCCeEEEEEcCCCCeEEEEEecCCCeEEEE
Q psy4876 505 DSIDT----KSQVCALLWNSDYKELVSAHGFAQNQLIIW 539 (609)
Q Consensus 505 ~~~~~----~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iw 539 (609)
..... .+.+..+.|..+.+-++. | .+|.|--|
T Consensus 266 ~~~~~~~~~~~n~~~i~f~~~~~gf~l--G-~~G~ll~~ 301 (302)
T PF14870_consen 266 QKDRVGENVPSNLYRIVFVNPDKGFVL--G-QDGVLLRY 301 (302)
T ss_dssp EE-GGGTTSSS---EEEEEETTEEEEE----STTEEEEE
T ss_pred eECccccCCCCceEEEEEcCCCceEEE--C-CCcEEEEe
Confidence 44432 346889999887777776 4 57776554
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.64 E-value=2.3 Score=48.82 Aligned_cols=95 Identities=17% Similarity=0.202 Sum_probs=59.4
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC-CeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSA-KKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
..-.|..|.++++|.+||..+..| |.|..+.. ......+.+....|.|= .+.+... .
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Cr-----------------t~~v~~~---~- 140 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCR-----------------TVPVDER---F- 140 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEE-----------------EEEechh---h-
Confidence 456799999999999999988866 54544432 11112233222222221 1222111 1
Q ss_pred EEccCCCCeEEEEEccC---CCEEEEEeCCCcEEEEeCCCC
Q psy4876 413 LLQNHTQEVCGLKWSPD---GRYLASGGNDNLLNIWSGVPG 450 (609)
Q Consensus 413 ~~~~h~~~V~~l~~spd---g~~lasgs~Dg~I~iwd~~~~ 450 (609)
....+...|..+.|+|. +.+|++-..|+++++||+...
T Consensus 141 ~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 141 FTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 12234567889999995 578999999999999999765
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.26 Score=52.55 Aligned_cols=121 Identities=16% Similarity=0.117 Sum_probs=82.3
Q ss_pred cceeeeeeecCCCCeEEEEEccCCC-------EEEEEeCCCeEEEEeCCCCe--eEEEecCCC----CceEEEEe-cCCE
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQEGY-------MLGVGTSLGTVQLWDVSAKK--KCRTMDGHD----VRVGALAW-NTYI 389 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~spdg~-------~Lasgs~dg~I~iwd~~~~~--~~~~l~~h~----~~V~~l~~-~~~~ 389 (609)
|++..-+.++ ..|.-+.+.|+.+ .-++|-.|..|.-||.+-.. .+...++|. ....|++- ...+
T Consensus 366 GKIVeEWk~~--~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~ 443 (644)
T KOG2395|consen 366 GKIVEEWKFE--DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGY 443 (644)
T ss_pred ceeeeEeecc--CCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCce
Confidence 5555555543 2377788888642 22357788889999986322 233333332 33455555 3578
Q ss_pred EEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q psy4876 390 LSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGV 448 (609)
Q Consensus 390 L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~ 448 (609)
+++|+.+|.|++||- .+......+.+...+|..|..+.||++|+..+ +..+.+.++.
T Consensus 444 IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 444 IVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred EEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 899999999999997 33345566788899999999999999887655 4677777754
|
|
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.17 Score=58.41 Aligned_cols=149 Identities=15% Similarity=0.126 Sum_probs=94.6
Q ss_pred CeEEEEEccCCCEEEEE--eCCCcEEEEeCCCCCCCCC--ccceE---eecCCcccEEEEEEcCCCCcEEEEEeccCCCe
Q psy4876 420 EVCGLKWSPDGRYLASG--GNDNLLNIWSGVPGQHTFS--TQPIH---SLSRHQAAVKAIAWCPWSPNVLASGGGTADRH 492 (609)
Q Consensus 420 ~V~~l~~spdg~~lasg--s~Dg~I~iwd~~~~~~~~~--~~~~~---~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~ 492 (609)
.+..+...+|+...++. +++-.|..||++.-..... ..++. ..........++.|.|.-....+.+ ..|+.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~--l~dls 179 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVD--LSDLS 179 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhh--ccccc
Confidence 45556666776654443 3445889999886532110 11111 1122234457889998765544544 37999
Q ss_pred EEEEECCCC-ceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC----CCCCEEEEEEeCCCC
Q psy4876 493 IYFWNVSSG-ACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG----HSARVLNLAMSPDET 567 (609)
Q Consensus 493 I~iwd~~t~-~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~----h~~~V~~l~~spdg~ 567 (609)
|++.-+... ..+..+......++++|+|.|+.+++ |...|++.-|.. +++....+.+ ...+|++|+|-....
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~i--G~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFI--GRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeE--ecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEeccee
Confidence 998877632 23344455668899999999999999 778888888874 4444444432 136899999988777
Q ss_pred EEEEEE
Q psy4876 568 TVLSAG 573 (609)
Q Consensus 568 ~L~s~s 573 (609)
+|++-+
T Consensus 257 flvvy~ 262 (1405)
T KOG3630|consen 257 FLVVYG 262 (1405)
T ss_pred EEEEec
Confidence 776543
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=95.51 E-value=2 Score=49.50 Aligned_cols=152 Identities=11% Similarity=0.097 Sum_probs=97.9
Q ss_pred CeEEEEEccC-CCEEEEEeC----------CCeEEEEeCCCCeeEEEecCC--CCceEEE-EecCCEEEEEecCCeEEEE
Q psy4876 337 NVCSVAWIQE-GYMLGVGTS----------LGTVQLWDVSAKKKCRTMDGH--DVRVGAL-AWNTYILSSGSRCGNIVHH 402 (609)
Q Consensus 337 ~V~~v~~spd-g~~Lasgs~----------dg~I~iwd~~~~~~~~~l~~h--~~~V~~l-~~~~~~L~sgs~dg~I~iw 402 (609)
.|.++.|..| +.++++|+. .|.|.||....++.++....+ .+.|.++ .|+|.+||.- ...|++|
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~I--n~~vrLy 853 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGI--NQSVRLY 853 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEec--CcEEEEE
Confidence 4555568877 688888863 588899988775444444332 3445554 3478877654 4589999
Q ss_pred EcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEe-ecCCcccEEEEEEcCCCCcE
Q psy4876 403 DVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHS-LSRHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 403 d~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~l 481 (609)
++.+. ..++.-..|...+..+...-.|..+++|.--+.|.+...+..+. ..... -.-+..+.+++.+-.+.. +
T Consensus 854 e~t~~-~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg----~f~evArD~~p~Wmtaveil~~d~-y 927 (1096)
T KOG1897|consen 854 EWTTE-RELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEG----NFEEVARDYNPNWMTAVEILDDDT-Y 927 (1096)
T ss_pred Ecccc-ceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCC----ceEEeehhhCccceeeEEEecCce-E
Confidence 99876 35556667778888999988999999998888777665554321 11111 123566777777766553 3
Q ss_pred EEEEeccCCCeEEEEECC
Q psy4876 482 LASGGGTADRHIYFWNVS 499 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~ 499 (609)
+.+ ..+|.+.+....
T Consensus 928 lga---e~~gNlf~v~~d 942 (1096)
T KOG1897|consen 928 LGA---ENSGNLFTVRKD 942 (1096)
T ss_pred Eee---cccccEEEEEec
Confidence 322 356776665443
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=6.5 Score=45.33 Aligned_cols=248 Identities=12% Similarity=0.009 Sum_probs=122.6
Q ss_pred ccccccCCcc---CCceeEEEEEecCCC-eEEEEcC------CeEEEEeCCCCCCCceEEecCCccccccccccccccce
Q psy4876 257 ADRILDAPEI---QNDYYLNLIDWSHFN-VLAVALG------GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAI 326 (609)
Q Consensus 257 p~~il~ap~~---~~~~~v~~l~wsp~~-lla~s~d------g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (609)
++.+||.-.+ ...+.+..+.|||++ +|+.+.| ..|++-|+.+ +..
T Consensus 111 ~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t-------------------------g~~ 165 (686)
T PRK10115 111 WETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET-------------------------GNW 165 (686)
T ss_pred CEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC-------------------------CCC
Confidence 3555554333 123668889999996 6665544 2688888877 431
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCC------CeEEEEeCCCC--eeEEEecCCCCceEEEEe---cCCEEEEEec
Q psy4876 327 DHLMDLEGNENVCSVAWIQEGYMLGVGTSL------GTVQLWDVSAK--KKCRTMDGHDVRVGALAW---NTYILSSGSR 395 (609)
Q Consensus 327 ~~l~~~~h~~~V~~v~~spdg~~Lasgs~d------g~I~iwd~~~~--~~~~~l~~h~~~V~~l~~---~~~~L~sgs~ 395 (609)
. ...+.. .-..++|.+|++.|+....+ ..|.++++.++ +....+...........+ ++.+++..+.
T Consensus 166 l-~~~i~~--~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~ 242 (686)
T PRK10115 166 Y-PELLDN--VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLA 242 (686)
T ss_pred C-CccccC--cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEE
Confidence 1 111111 11469999999877665442 36788888877 333444433333332222 5565554443
Q ss_pred ---CCeEEEEEcCCCCeeEEEEccCC-CCeEEEEEccCCCEEEEEeCC--C--cEEEEeCCCCCCCCCccceEeecCC-c
Q psy4876 396 ---CGNIVHHDVRSRDHKVALLQNHT-QEVCGLKWSPDGRYLASGGND--N--LLNIWSGVPGQHTFSTQPIHSLSRH-Q 466 (609)
Q Consensus 396 ---dg~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~lasgs~D--g--~I~iwd~~~~~~~~~~~~~~~~~~h-~ 466 (609)
++.+.+++..........+..+. .....+. +.. ..|..-++. . .|...++... .....+..+ .
T Consensus 243 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ly~~tn~~~~~~~l~~~~~~~~------~~~~~l~~~~~ 314 (686)
T PRK10115 243 SATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HRFYLRSNRHGKNFGLYRTRVRDE------QQWEELIPPRE 314 (686)
T ss_pred CCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CEEEEEEcCCCCCceEEEecCCCc------ccCeEEECCCC
Confidence 35688888532211111122222 2222222 222 333333332 2 3444444321 111233334 2
Q ss_pred -ccEEEEEEcCCCCcEEEEEeccCCCeEE--EEECCCCceeEEEcC--CCCeEEEEEc--CCCCeE-EEEEe-cCCCeEE
Q psy4876 467 -AAVKAIAWCPWSPNVLASGGGTADRHIY--FWNVSSGACLDSIDT--KSQVCALLWN--SDYKEL-VSAHG-FAQNQLI 537 (609)
Q Consensus 467 -~~V~~l~~sp~~~~llasggGs~Dg~I~--iwd~~t~~~~~~~~~--~~~v~sl~~s--~~g~~l-~~~sG-~~dg~I~ 537 (609)
..|..+.+. +..++++.. .++.-+ ++|..++ .+..+.. ...+..+.++ +++..+ +..++ ..-+.+.
T Consensus 315 ~~~i~~~~~~--~~~l~~~~~--~~g~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y 389 (686)
T PRK10115 315 NIMLEGFTLF--TDWLVVEER--QRGLTSLRQINRKTR-EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLF 389 (686)
T ss_pred CCEEEEEEEE--CCEEEEEEE--eCCEEEEEEEcCCCC-ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEE
Confidence 367888887 445666653 565544 4554433 3444432 2233333344 444433 33322 2356788
Q ss_pred EEECCCCc
Q psy4876 538 IWKYPSLV 545 (609)
Q Consensus 538 Iwd~~~~~ 545 (609)
.+|..+++
T Consensus 390 ~~d~~~~~ 397 (686)
T PRK10115 390 ELDMDTGE 397 (686)
T ss_pred EEECCCCc
Confidence 88887654
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.45 E-value=3.8 Score=47.47 Aligned_cols=201 Identities=11% Similarity=0.066 Sum_probs=112.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCc--------eEEEEe------------------cCCEEEEEecCCeEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVR--------VGALAW------------------NTYILSSGSRCGNIV 400 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~--------V~~l~~------------------~~~~L~sgs~dg~I~ 400 (609)
+..|++++.++.|.-.|..+|+.+-.+...... +..+++ .+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567777888899999999999887776532211 112222 234788888999999
Q ss_pred EEEcCCCCeeEEEEccCCCCeE-------------EEEEcc--CCCEEEEEeC----------CCcEEEEeCCCCCCCCC
Q psy4876 401 HHDVRSRDHKVALLQNHTQEVC-------------GLKWSP--DGRYLASGGN----------DNLLNIWSGVPGQHTFS 455 (609)
Q Consensus 401 iwd~~~~~~~~~~~~~h~~~V~-------------~l~~sp--dg~~lasgs~----------Dg~I~iwd~~~~~~~~~ 455 (609)
-.|.+++. .+..+. ..+.|. .+.-.| .+..+++|+. +|.|+-+|.++|+..+.
T Consensus 274 ALDA~TGk-~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 274 ALDADTGK-LCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEECCCCC-EEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 99999885 443332 111110 111122 2345666643 68899999999954322
Q ss_pred ccce-----------EeecCCcccE-EEEEEcCCCCcEEEEEec----------------cCCCeEEEEECCCCceeEEE
Q psy4876 456 TQPI-----------HSLSRHQAAV-KAIAWCPWSPNVLASGGG----------------TADRHIYFWNVSSGACLDSI 507 (609)
Q Consensus 456 ~~~~-----------~~~~~h~~~V-~~l~~sp~~~~llasggG----------------s~Dg~I~iwd~~t~~~~~~~ 507 (609)
.... ..+......+ ..+++++... ++..+.| ...+.|.-.|.++|+..-.+
T Consensus 352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g-lvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG-LVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF 430 (764)
T ss_pred EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCC-eEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence 1110 0000000111 2344555443 2222211 12456777888999887766
Q ss_pred cC-CC---------CeEEEEEcC-CCC-eEEEEEecCCCeEEEEECCCCceEEEE
Q psy4876 508 DT-KS---------QVCALLWNS-DYK-ELVSAHGFAQNQLIIWKYPSLVKVAEL 550 (609)
Q Consensus 508 ~~-~~---------~v~sl~~s~-~g~-~l~~~sG~~dg~I~Iwd~~~~~~~~~l 550 (609)
.. +. +..-+.+.. +|+ .=++..+..+|.++++|-.+++.+...
T Consensus 431 Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 431 QTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 53 21 122222333 553 113333668999999999999887653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.43 E-value=3.3 Score=43.99 Aligned_cols=183 Identities=9% Similarity=0.040 Sum_probs=85.1
Q ss_pred EEccCCCEEEEEeC------CCeEEEEeCCCCeeEEEecCCCC---ceEEEEec--CCEEEEEec---------------
Q psy4876 342 AWIQEGYMLGVGTS------LGTVQLWDVSAKKKCRTMDGHDV---RVGALAWN--TYILSSGSR--------------- 395 (609)
Q Consensus 342 ~~spdg~~Lasgs~------dg~I~iwd~~~~~~~~~l~~h~~---~V~~l~~~--~~~L~sgs~--------------- 395 (609)
-.-|+|+.++++-. -|-+.++|-++.+.......... --..+-|. .+.+++...
T Consensus 136 Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~ 215 (461)
T PF05694_consen 136 HCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDL 215 (461)
T ss_dssp EE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTH
T ss_pred eecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHh
Confidence 33467877776432 24688888887777666553221 12233333 345555432
Q ss_pred -----CCeEEEEEcCCCCeeEEEEccCC--CCeEEEEEcc--CCCE-EEEEeCCCcEEEEeC-CCCCCCCCccceEeecC
Q psy4876 396 -----CGNIVHHDVRSRDHKVALLQNHT--QEVCGLKWSP--DGRY-LASGGNDNLLNIWSG-VPGQHTFSTQPIHSLSR 464 (609)
Q Consensus 396 -----dg~I~iwd~~~~~~~~~~~~~h~--~~V~~l~~sp--dg~~-lasgs~Dg~I~iwd~-~~~~~~~~~~~~~~~~~ 464 (609)
..++.+||+.++ +.++++.--. ..+..|.|.. +..+ |+.+.-...|..|-- ..+. +..+.+..+..
T Consensus 216 ~~~~yG~~l~vWD~~~r-~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~--W~a~kVi~ip~ 292 (461)
T PF05694_consen 216 EAGKYGHSLHVWDWSTR-KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE--WAAEKVIDIPA 292 (461)
T ss_dssp HHH-S--EEEEEETTTT-EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE--EEEEEEEEE--
T ss_pred hcccccCeEEEEECCCC-cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC--eeeeEEEECCC
Confidence 357999999997 4666665332 2355677754 4444 333333445555533 3321 21122222211
Q ss_pred -----------------CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc---eeEEEcCC--------------
Q psy4876 465 -----------------HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA---CLDSIDTK-------------- 510 (609)
Q Consensus 465 -----------------h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~---~~~~~~~~-------------- 510 (609)
-..-|+.|..+.|.++|.+++ -.+|.|+.||+.... .+..+...
T Consensus 293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~--W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~ 370 (461)
T PF05694_consen 293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSN--WLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGK 370 (461)
T ss_dssp EE--SS---GGGGGG-EE------EEE-TTS-EEEEEE--TTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS---
T ss_pred cccCcccccccccccccCCCceEeEEEccCCCEEEEEc--ccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccc
Confidence 134578999999999888887 479999999998643 33333222
Q ss_pred ---CCeEEEEEcCCCCeEEEEE
Q psy4876 511 ---SQVCALLWNSDYKELVSAH 529 (609)
Q Consensus 511 ---~~v~sl~~s~~g~~l~~~s 529 (609)
+...-+..|.||+.|+++.
T Consensus 371 ~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 371 RLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ---S----EEE-TTSSEEEEE-
T ss_pred ccCCCCCeEEEccCCeEEEEEe
Confidence 2346788999999998854
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.58 Score=52.26 Aligned_cols=191 Identities=10% Similarity=0.125 Sum_probs=89.4
Q ss_pred EEEEecCCEEEEEecCC------eEEEEEcCCCCeeEEEEcc---CCCCeEEEEEccCCCEEEEEeCC-----CcEEEEe
Q psy4876 381 GALAWNTYILSSGSRCG------NIVHHDVRSRDHKVALLQN---HTQEVCGLKWSPDGRYLASGGND-----NLLNIWS 446 (609)
Q Consensus 381 ~~l~~~~~~L~sgs~dg------~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~lasgs~D-----g~I~iwd 446 (609)
.++..++.+++.|+.++ .+..||..+.. ...+.. ..... +++ .-++.+++.||.+ ..+..||
T Consensus 289 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~R~~~-~~~-~~~~~lyv~GG~~~~~~~~~v~~yd 364 (534)
T PHA03098 289 GSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKS--WNKVPELIYPRKNP-GVT-VFNNRIYVIGGIYNSISLNTVESWK 364 (534)
T ss_pred eEEEECCEEEEECCCcCCCCeeccEEEEeCCCCe--eeECCCCCcccccc-eEE-EECCEEEEEeCCCCCEecceEEEEc
Confidence 34555777777777543 46778877643 122211 11111 222 2367778888865 3577888
Q ss_pred CCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCC----CeEEEEECCCCceeEEEcCCC--CeEEEEEcC
Q psy4876 447 GVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD----RHIYFWNVSSGACLDSIDTKS--QVCALLWNS 520 (609)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~D----g~I~iwd~~t~~~~~~~~~~~--~v~sl~~s~ 520 (609)
..+... .....+....... +++.. +..+++.||-..+ ..+..||..+++-...-.... .-.+++ ..
T Consensus 365 ~~~~~W----~~~~~lp~~r~~~-~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~ 436 (534)
T PHA03098 365 PGESKW----REEPPLIFPRYNP-CVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YH 436 (534)
T ss_pred CCCCce----eeCCCcCcCCccc-eEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EE
Confidence 876532 1111111111111 12222 3467777752122 468889987654322111111 111122 22
Q ss_pred CCCeEEEEEecCC-------CeEEEEECCCCc--eEEEEeCCCCCEEEEEEeCCCCEEEEEECC-----CCEEEEEcCCC
Q psy4876 521 DYKELVSAHGFAQ-------NQLIIWKYPSLV--KVAELHGHSARVLNLAMSPDETTVLSAGAD-----ETLRLWKIFEK 586 (609)
Q Consensus 521 ~g~~l~~~sG~~d-------g~I~Iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~s~s~D-----g~I~iWdl~~~ 586 (609)
++ .+++.+|... ..+.+||..+.+ .+..+.........+.+ ++..++.||.+ ..|.+||..+.
T Consensus 437 ~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 437 DG-KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CC-EEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 33 4444434321 237888876543 22222111111112222 67777777654 46777777654
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.056 Score=61.88 Aligned_cols=112 Identities=16% Similarity=0.267 Sum_probs=77.4
Q ss_pred CCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q psy4876 376 HDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS 455 (609)
Q Consensus 376 h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~ 455 (609)
....+.+.+.-+..++.|+..|.+...|....-.....-..-.++|++++|+.+|..++.|-.+|.|.+||+..+
T Consensus 88 ~~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~----- 162 (1206)
T KOG2079|consen 88 IAAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA----- 162 (1206)
T ss_pred CCcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-----
Confidence 344555566667778888888999888887631111222234578999999999999999999999999999988
Q ss_pred ccceEeecCCcccEEEEE---EcCCCCcEEEEEeccCCCeEEEEEC
Q psy4876 456 TQPIHSLSRHQAAVKAIA---WCPWSPNVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 456 ~~~~~~~~~h~~~V~~l~---~sp~~~~llasggGs~Dg~I~iwd~ 498 (609)
..++.+..|..++.++- |..++. .+.++ ...|. +|.+
T Consensus 163 -k~l~~i~e~~ap~t~vi~v~~t~~nS-~llt~--D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 -KILKVITEHGAPVTGVIFVGRTSQNS-KLLTS--DTGGS--FWKL 202 (1206)
T ss_pred -cceeeeeecCCccceEEEEEEeCCCc-EEEEc--cCCCc--eEEE
Confidence 67777777777666554 334443 44443 23343 5554
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.25 E-value=4.9 Score=42.50 Aligned_cols=141 Identities=16% Similarity=0.209 Sum_probs=75.3
Q ss_pred CCeEEEEEccCCCEEEEEe-----------CCC-eEEEEeCCC--Ce--eEEEecCCCCceEEEEec-CCEEEEEecCCe
Q psy4876 336 ENVCSVAWIQEGYMLGVGT-----------SLG-TVQLWDVSA--KK--KCRTMDGHDVRVGALAWN-TYILSSGSRCGN 398 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs-----------~dg-~I~iwd~~~--~~--~~~~l~~h~~~V~~l~~~-~~~L~sgs~dg~ 398 (609)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+...-.....+++. +. |++++....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i 92 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI 92 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence 4567899999998877642 223 777776543 22 223443334455777773 33 555554433
Q ss_pred EEEEEcCCC-----C-eeE-EEEcc----CCCCeEEEEEccCCCEEEEEeCC-------------------CcEEEEeCC
Q psy4876 399 IVHHDVRSR-----D-HKV-ALLQN----HTQEVCGLKWSPDGRYLASGGND-------------------NLLNIWSGV 448 (609)
Q Consensus 399 I~iwd~~~~-----~-~~~-~~~~~----h~~~V~~l~~spdg~~lasgs~D-------------------g~I~iwd~~ 448 (609)
+++.|.... . +.+ ..+.. +......++|.|||.+.++-+.. |.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 334454321 1 111 12222 23447789999999876654421 345555554
Q ss_pred CCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEE
Q psy4876 449 PGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 449 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 485 (609)
.+ .+..+.........++|+++| .++++-
T Consensus 173 g~-------~~e~~a~G~rnp~Gl~~d~~G-~l~~td 201 (367)
T TIGR02604 173 GG-------KLRVVAHGFQNPYGHSVDSWG-DVFFCD 201 (367)
T ss_pred CC-------eEEEEecCcCCCccceECCCC-CEEEEc
Confidence 43 122222222334689999987 455553
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.14 E-value=3.9 Score=40.77 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=86.7
Q ss_pred CCeEEEEEccCCCEEEEEe---CCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEE-cCCCCe
Q psy4876 336 ENVCSVAWIQEGYMLGVGT---SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHD-VRSRDH 409 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs---~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd-~~~~~~ 409 (609)
..+.+.+++++|..+|... ....+.++.. +.....+. ....+..-.|+ +...+....+....++. ...+..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 3789999999998777655 2234555543 33333321 22266667774 45555555455555553 222222
Q ss_pred eEEEEccC--CCCeEEEEEccCCCEEEEEe---CCCcEEEEeCCCCCCC---CCccceEeecCCcccEEEEEEcCCCCcE
Q psy4876 410 KVALLQNH--TQEVCGLKWSPDGRYLASGG---NDNLLNIWSGVPGQHT---FSTQPIHSLSRHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 410 ~~~~~~~h--~~~V~~l~~spdg~~lasgs---~Dg~I~iwd~~~~~~~---~~~~~~~~~~~h~~~V~~l~~sp~~~~l 481 (609)
........ ...|..+.+||||..+|... .++.|++=-+...... ....++.........+.+++|.+++. |
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~-L 179 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST-L 179 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE-E
Confidence 22222211 12899999999999887766 3467777654432211 11123333334456889999999884 5
Q ss_pred EEEEeccCCCeEEE
Q psy4876 482 LASGGGTADRHIYF 495 (609)
Q Consensus 482 lasggGs~Dg~I~i 495 (609)
++.+. ..+..+..
T Consensus 180 ~V~~~-~~~~~~~~ 192 (253)
T PF10647_consen 180 VVLGR-SAGGPVVR 192 (253)
T ss_pred EEEeC-CCCCceeE
Confidence 55443 34554443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.66 Score=51.78 Aligned_cols=150 Identities=12% Similarity=0.044 Sum_probs=75.1
Q ss_pred cCCCEEEEEeCCC------eEEEEeCCCCeeEEE--ecCCCCceEEEEecCCEEEEEecCC-----eEEEEEcCCCCee-
Q psy4876 345 QEGYMLGVGTSLG------TVQLWDVSAKKKCRT--MDGHDVRVGALAWNTYILSSGSRCG-----NIVHHDVRSRDHK- 410 (609)
Q Consensus 345 pdg~~Lasgs~dg------~I~iwd~~~~~~~~~--l~~h~~~V~~l~~~~~~L~sgs~dg-----~I~iwd~~~~~~~- 410 (609)
.++..+++|+.++ .+..||..+.+-... +.........+..++.+++.|+.++ .+..||..+..-.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 3455666676542 577888877654221 1112223344556788888888653 4677887764311
Q ss_pred EEEEccCCCCeEEEEEccCCCEEEEEeCC------CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 411 VALLQNHTQEVCGLKWSPDGRYLASGGND------NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 411 ~~~~~~h~~~V~~l~~spdg~~lasgs~D------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
...+. +...-.+++ .-++.+.+.||.+ +.+..||..+..- ..+..+........++.. +..+++.
T Consensus 373 ~~~lp-~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W----~~~~~~p~~r~~~~~~~~---~~~iyv~ 443 (534)
T PHA03098 373 EPPLI-FPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKW----SKGSPLPISHYGGCAIYH---DGKIYVI 443 (534)
T ss_pred CCCcC-cCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCee----eecCCCCccccCceEEEE---CCEEEEE
Confidence 11111 111111122 2356777777732 4588899876532 111111111111112222 3467777
Q ss_pred EeccCC------CeEEEEECCCCce
Q psy4876 485 GGGTAD------RHIYFWNVSSGAC 503 (609)
Q Consensus 485 ggGs~D------g~I~iwd~~t~~~ 503 (609)
||.... ..+.+||..+++-
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCce
Confidence 752221 2388899887653
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.03 Score=53.50 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=66.7
Q ss_pred EEEEEeccCCCeEEEEECCC-CceeEEEcCC-CC-eEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCC-CC
Q psy4876 481 VLASGGGTADRHIYFWNVSS-GACLDSIDTK-SQ-VCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHS-AR 556 (609)
Q Consensus 481 llasggGs~Dg~I~iwd~~t-~~~~~~~~~~-~~-v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~-~~ 556 (609)
-+++| +.+|.|++|+... |.....+... .. .+.+.--.++.+.++ +..+|.|+.|++.-.+.+...-.|. ..
T Consensus 72 ~~~vG--~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~--~~~dg~ir~~n~~p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 72 KLMVG--TSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCV--GAQDGRIRACNIKPNKVLGYVGQHNFES 147 (238)
T ss_pred eEEee--cccceEEEecCCccchHHHhhhcccccceeccccccccceeEE--eccCCceeeeccccCceeeeeccccCCC
Confidence 44444 4899999998862 2211111111 12 222333334444555 5589999999998888887777777 66
Q ss_pred EEEEEEeCCCCEEEEE--ECCCCEEEEEcCCCc
Q psy4876 557 VLNLAMSPDETTVLSA--GADETLRLWKIFEKV 587 (609)
Q Consensus 557 V~~l~~spdg~~L~s~--s~Dg~I~iWdl~~~~ 587 (609)
+.....+..+.+|+.+ |.|..++.|++..-.
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 6666667777778877 888888888886533
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.99 E-value=4.6 Score=40.79 Aligned_cols=218 Identities=12% Similarity=0.127 Sum_probs=126.7
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEeCC-------CCeeEEEecC-----CCCceEEEEecC--------------CEE
Q psy4876 337 NVCSVAWIQEGYMLGVGTSLGTVQLWDVS-------AKKKCRTMDG-----HDVRVGALAWNT--------------YIL 390 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~dg~I~iwd~~-------~~~~~~~l~~-----h~~~V~~l~~~~--------------~~L 390 (609)
.-+.|+++|.+.+-++....+...+||.. ...++.++.. .....+.+.|++ ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45689999999888888888999999986 1233444442 234567777742 236
Q ss_pred EEEecCCeEEEEEcCCCCe----eEEEEc-cC-CCCeEEEEEccC--CCEEEEE-eCCCcEEEEeCCCCCCCCCccceEe
Q psy4876 391 SSGSRCGNIVHHDVRSRDH----KVALLQ-NH-TQEVCGLKWSPD--GRYLASG-GNDNLLNIWSGVPGQHTFSTQPIHS 461 (609)
Q Consensus 391 ~sgs~dg~I~iwd~~~~~~----~~~~~~-~h-~~~V~~l~~spd--g~~lasg-s~Dg~I~iwd~~~~~~~~~~~~~~~ 461 (609)
+.+++||+|.-|....... ....+. .. ..--..+++... +.+|..+ -..++|.|+|-.-.... .-..
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~----~~g~ 179 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP----LPGS 179 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc----CCCC
Confidence 7788999999998543322 122222 11 223345565532 4444433 35688888875432100 0001
Q ss_pred ecCC-----cccEEEEEEcCCCCcEEEEEe-----------ccCCCeEEEEECCCCceeEEEcCCC---CeEEEEEcC--
Q psy4876 462 LSRH-----QAAVKAIAWCPWSPNVLASGG-----------GTADRHIYFWNVSSGACLDSIDTKS---QVCALLWNS-- 520 (609)
Q Consensus 462 ~~~h-----~~~V~~l~~sp~~~~llasgg-----------Gs~Dg~I~iwd~~t~~~~~~~~~~~---~v~sl~~s~-- 520 (609)
+... -.+..-... +..|+++-. |.--|.|-+||+. |..++.+.... ..+.|+..|
T Consensus 180 F~DP~iPagyAPFnIqni---g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 180 FIDPALPAGYAPFNVQNL---GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred ccCCCCCCCCCCcceEEE---CCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhh
Confidence 1110 111110011 123333321 1235789999975 77888776543 455666644
Q ss_pred ----CCCeEEEEEecCCCeEEEEECCCCceEEEEeCCC------CCEEEEEEeC
Q psy4876 521 ----DYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHS------ARVLNLAMSP 564 (609)
Q Consensus 521 ----~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~------~~V~~l~~sp 564 (609)
.+.+|+- .+.||+|..||..+++.+..+.... ..++.|+|..
T Consensus 256 FG~~sg~lLVG--NFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 256 FGSLSGALLVG--NFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hCCCCCCeEEe--ecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 3555555 5679999999999999888876543 3568888875
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.91 E-value=2.1 Score=46.79 Aligned_cols=170 Identities=14% Similarity=0.203 Sum_probs=97.8
Q ss_pred CCeEEEEEccCCCEEE-EEe--CCCeEEEEeCCCCeeEEEecCCCCceEEEEec------CCEEEEEecCCeEEEEEcCC
Q psy4876 336 ENVCSVAWIQEGYMLG-VGT--SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN------TYILSSGSRCGNIVHHDVRS 406 (609)
Q Consensus 336 ~~V~~v~~spdg~~La-sgs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~------~~~L~sgs~dg~I~iwd~~~ 406 (609)
.+|..++|. ||+.++ +.- .+|.+++=| .+.+..| ..|..+.|. ...|++......|.||.+.-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 578889997 554443 322 234443322 2334443 458889993 22555666778999998862
Q ss_pred CC----eeEEEEcc-C----CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCC
Q psy4876 407 RD----HKVALLQN-H----TQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW 477 (609)
Q Consensus 407 ~~----~~~~~~~~-h----~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 477 (609)
.. +.+..... . .---.++.|+|....|++-.....=.+++++... ..+..-....+.|.|.+|.+|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~-----srVkaDi~~~G~IhCACWT~D 166 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDS-----SRVKADIKTSGLIHCACWTKD 166 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCC-----ceEEEeccCCceEEEEEecCc
Confidence 21 11111111 1 1123467899999988887765544556665442 233332346788999999999
Q ss_pred CCcEEEEEeccCCCeEEEEECCCCce-----eEEEcCCCCeEEEEEcC
Q psy4876 478 SPNVLASGGGTADRHIYFWNVSSGAC-----LDSIDTKSQVCALLWNS 520 (609)
Q Consensus 478 ~~~llasggGs~Dg~I~iwd~~t~~~-----~~~~~~~~~v~sl~~s~ 520 (609)
|.+|+++-| ..=.-++||-..... .-.|+.++.|+++.-.-
T Consensus 167 G~RLVVAvG--SsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~ 212 (671)
T PF15390_consen 167 GQRLVVAVG--SSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATV 212 (671)
T ss_pred CCEEEEEeC--CeEEEEEecCchhhhhhCCcceeecCCCceEEEEEec
Confidence 988877654 355678898653321 12344455555554433
|
|
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.032 Score=62.49 Aligned_cols=136 Identities=18% Similarity=0.254 Sum_probs=82.2
Q ss_pred CCCeEEEEEcc---CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe
Q psy4876 335 NENVCSVAWIQ---EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDH 409 (609)
Q Consensus 335 ~~~V~~v~~sp---dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~ 409 (609)
...+.-|.|.| +.-++..+-.+|.|++....+... ..+.+|..++..++| .|.+++.+
T Consensus 180 gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~---------------- 242 (1283)
T KOG1916|consen 180 GSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS---------------- 242 (1283)
T ss_pred CCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee----------------
Confidence 34455666665 557777788888888877665332 445568888887776 22211111
Q ss_pred eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcc-cEEEEEEcCC-------CCcE
Q psy4876 410 KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA-AVKAIAWCPW-------SPNV 481 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~-------~~~l 481 (609)
.||||..||.++.||.++.|.+.-.. .....+++..+.|.+ +-.|..++.. +.+.
T Consensus 243 ----------------lSpDGtv~a~a~~dG~v~f~Qiyi~g-~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~ 305 (1283)
T KOG1916|consen 243 ----------------LSPDGTVFAWAISDGSVGFYQIYITG-KIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWV 305 (1283)
T ss_pred ----------------eCCCCcEEEEeecCCccceeeeeeec-cccHhhhhccCCCCCCCceeeeeccccccCCccceeE
Confidence 78899999999999988888764221 111256666666763 3333332221 1222
Q ss_pred EEEEeccCCCeEEEEECCCCcee
Q psy4876 482 LASGGGTADRHIYFWNVSSGACL 504 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t~~~~ 504 (609)
+...+....+.+++|.....+|+
T Consensus 306 ~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 306 LRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred EEEecccCCcceeEeeccchhhh
Confidence 22222246678999998888777
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.87 E-value=1 Score=50.42 Aligned_cols=117 Identities=15% Similarity=0.203 Sum_probs=75.0
Q ss_pred eeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEec-CCCCceEEEEe----cCCEEEEEecCCeEEEEE
Q psy4876 330 MDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMD-GHDVRVGALAW----NTYILSSGSRCGNIVHHD 403 (609)
Q Consensus 330 ~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~----~~~~L~sgs~dg~I~iwd 403 (609)
.+++ .-..++-+.-+.-++..++-.....+.|||...+.....-. ...+.|.++.| ++..+++.+-...|.++-
T Consensus 23 ~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 23 STFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3443 33455555555555555555555689999999876443322 45788999999 577788888888888874
Q ss_pred cC-----CCC---eeEEE--EccCC-CCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q psy4876 404 VR-----SRD---HKVAL--LQNHT-QEVCGLKWSPDGRYLASGGNDNLLNIWSGV 448 (609)
Q Consensus 404 ~~-----~~~---~~~~~--~~~h~-~~V~~l~~spdg~~lasgs~Dg~I~iwd~~ 448 (609)
-. ... ..+.. +..|+ .+|.+..|.++|.+++.+ ++.+.|+|-.
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 31 111 11222 33444 689999999999655544 3678888743
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.84 E-value=4.8 Score=40.30 Aligned_cols=196 Identities=11% Similarity=0.039 Sum_probs=117.0
Q ss_pred CCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCC-CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q psy4876 377 DVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHT-QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS 455 (609)
Q Consensus 377 ~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~ 455 (609)
..-+..+.+.+++...+..+.-++|.|+.+...+...-.-.. +.-.++ .-.|++..++..|.-+.+.|+.+.+..
T Consensus 86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv--~vsGn~aYVadlddgfLivdvsdpssP-- 161 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGV--YVSGNYAYVADLDDGFLIVDVSDPSSP-- 161 (370)
T ss_pred hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEE--EecCCEEEEeeccCcEEEEECCCCCCc--
Confidence 345666777889999999999999999998764433322122 333343 445889988887777889999876422
Q ss_pred ccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc---eeEEEcCCCCeEEEEEcCCCCeEEEEEecC
Q psy4876 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA---CLDSIDTKSQVCALLWNSDYKELVSAHGFA 532 (609)
Q Consensus 456 ~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~---~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~ 532 (609)
+....+......-..++.+- +.-+++. .|+-+.+.|+.... .+...+....+.++..+++.-+++. -
T Consensus 162 -~lagrya~~~~d~~~v~ISG--n~AYvA~---~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vv----y 231 (370)
T COG5276 162 -QLAGRYALPGGDTHDVAISG--NYAYVAW---RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVV----Y 231 (370)
T ss_pred -eeeeeeccCCCCceeEEEec--CeEEEEE---eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEE----c
Confidence 34444444444445666654 3344443 68889999997543 4455556667888888888877776 2
Q ss_pred CCeEEEEECCCCceEEEEeC-CCCCEEEE-EEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 533 QNQLIIWKYPSLVKVAELHG-HSARVLNL-AMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 533 dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l-~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
+.-+.+-|.........+-. ....+.++ .+.-.|++...+..+.-+.+-|+.+.
T Consensus 232 ~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 232 DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCC
Confidence 44566666655443322211 11111111 22223445555555555555555543
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=94.78 E-value=7.9 Score=44.96 Aligned_cols=154 Identities=11% Similarity=0.080 Sum_probs=92.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccE-------------EEEEEcC--CCCcEEEEEec-------
Q psy4876 430 GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAV-------------KAIAWCP--WSPNVLASGGG------- 487 (609)
Q Consensus 430 g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V-------------~~l~~sp--~~~~llasggG------- 487 (609)
+..++.++.|+.|.-.|.++| +.+..+.. .+.| ..+.-.| .+ .++++|+.
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TG------k~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~-g~VIvG~~v~d~~~~ 331 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTG------KLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAG-TTVVIGGRVADNYST 331 (764)
T ss_pred CCEEEEecCCCeEEEEECCCC------CEEEEecC-CCceeeecccCcCCCcccccccCCEEEC-CEEEEEecccccccc
Confidence 447888889999999999998 44433321 1111 0011111 02 24444431
Q ss_pred -cCCCeEEEEECCCCceeEEEcCCC------------------Ce-EEEEEcCCCCeEEEEEec----------------
Q psy4876 488 -TADRHIYFWNVSSGACLDSIDTKS------------------QV-CALLWNSDYKELVSAHGF---------------- 531 (609)
Q Consensus 488 -s~Dg~I~iwd~~t~~~~~~~~~~~------------------~v-~sl~~s~~g~~l~~~sG~---------------- 531 (609)
..+|.|+-+|..+|+.+-.+.... .+ ..+++++....++...|.
T Consensus 332 ~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~ 411 (764)
T TIGR03074 332 DEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEK 411 (764)
T ss_pred cCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCccc
Confidence 126889999999999887765310 11 344566666666554331
Q ss_pred CCCeEEEEECCCCceEEEEeCCCCCEEE---------EEEeC-CCC---EEEEEECCCCEEEEEcCCCccchh
Q psy4876 532 AQNQLIIWKYPSLVKVAELHGHSARVLN---------LAMSP-DET---TVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 532 ~dg~I~Iwd~~~~~~~~~l~~h~~~V~~---------l~~sp-dg~---~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
..+.|.-.|..+++..-.++.....+++ +.+.- +|+ .|+.++.+|.+.+.|-.+++..-.
T Consensus 412 y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 412 YSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred ccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 1345667788899888777541111111 22322 563 889999999999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.15 Score=47.88 Aligned_cols=96 Identities=26% Similarity=0.368 Sum_probs=52.7
Q ss_pred eEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccc-----cccc-c---ccceeee--eee--c--CC
Q psy4876 271 YLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTS-----KCIQ-D---NRAIDHL--MDL--E--GN 335 (609)
Q Consensus 271 ~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~---~~~~~~l--~~~--~--h~ 335 (609)
+.++|+||.||.||+..+..|+|.+..+...........+....... .... . ....... ..+ . ..
T Consensus 6 ~~~~l~WS~Dg~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~ 85 (173)
T PF12657_consen 6 CPNALAWSEDGQLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISS 85 (173)
T ss_pred CCcCeeECCCCCEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceecccccccccccc
Confidence 35789999999999999999999955543200000000000000000 0000 0 0000000 000 0 12
Q ss_pred CCeEEEEEccCC------CEEEEEeCCCeEEEEeCCC
Q psy4876 336 ENVCSVAWIQEG------YMLGVGTSLGTVQLWDVSA 366 (609)
Q Consensus 336 ~~V~~v~~spdg------~~Lasgs~dg~I~iwd~~~ 366 (609)
..|.+++|||-| .+||+.+.+|.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 389999999954 5788899999999998653
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.62 E-value=2.9 Score=41.59 Aligned_cols=158 Identities=15% Similarity=0.201 Sum_probs=92.1
Q ss_pred EEEEccCCCEEEEEeCC-----CeEEEEeCCCC-eeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEE-E-------
Q psy4876 340 SVAWIQEGYMLGVGTSL-----GTVQLWDVSAK-KKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHH-D------- 403 (609)
Q Consensus 340 ~v~~spdg~~Lasgs~d-----g~I~iwd~~~~-~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iw-d------- 403 (609)
.=.|||||.+|+..-.| |.|-|||...+ +.+.++..|.-.-..+.| ||..++.+. |-|..+ |
T Consensus 118 HGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lN 195 (366)
T COG3490 118 HGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELN 195 (366)
T ss_pred ccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccc
Confidence 34699999999875443 78999999754 567778888777777777 777777653 334443 2
Q ss_pred cCCCCeeEE-------------EEc--cCCCCeEEEEEccCCCEEEEEeCCCc-----EEEEeCCCCCCCCCccceEeec
Q psy4876 404 VRSRDHKVA-------------LLQ--NHTQEVCGLKWSPDGRYLASGGNDNL-----LNIWSGVPGQHTFSTQPIHSLS 463 (609)
Q Consensus 404 ~~~~~~~~~-------------~~~--~h~~~V~~l~~spdg~~lasgs~Dg~-----I~iwd~~~~~~~~~~~~~~~~~ 463 (609)
++..+..+. ++. .+.-.|..++..+||..++-+-..|. -.+=-...+ +++.-+.
T Consensus 196 ldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g------~~l~~~~ 269 (366)
T COG3490 196 LDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKG------EPLEFLD 269 (366)
T ss_pred hhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCC------CcCcccC
Confidence 222111111 111 23345777788778776555433221 000001111 2222111
Q ss_pred -------CCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEE
Q psy4876 464 -------RHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI 507 (609)
Q Consensus 464 -------~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~ 507 (609)
.....|-+|+.+-+...+.++. -..+...+||..+|..+..-
T Consensus 270 ~pee~~~~~anYigsiA~n~~~glV~lTS--P~GN~~vi~da~tG~vv~~a 318 (366)
T COG3490 270 LPEEQTAAFANYIGSIAANRRDGLVALTS--PRGNRAVIWDAATGAVVSEA 318 (366)
T ss_pred CCHHHHHHHHhhhhheeecccCCeEEEec--CCCCeEEEEEcCCCcEEecc
Confidence 1234567788877665666665 36778899999999877553
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.1 Score=50.13 Aligned_cols=110 Identities=21% Similarity=0.332 Sum_probs=73.0
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEc--CCCCcEEEEEeccCCCeEEEEE
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWC--PWSPNVLASGGGTADRHIYFWN 497 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~llasggGs~Dg~I~iwd 497 (609)
...-+.-+.-++..++-+....+.|||.+.+.. +.-..+ ...+.|.++.|. |++..++++| ....|.+|-
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l----E~~~~f-~~~~~I~dLDWtst~d~qsiLaVG---f~~~v~l~~ 102 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVL----EYEESF-SEDDPIRDLDWTSTPDGQSILAVG---FPHHVLLYT 102 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEE----EEeeee-cCCCceeeceeeecCCCCEEEEEE---cCcEEEEEE
Confidence 334444444455444444456799999997731 122223 456789999985 6888889988 688888875
Q ss_pred CC---------CCceeEEEc----CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 498 VS---------SGACLDSID----TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 498 ~~---------t~~~~~~~~----~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
-. +...+..++ +..+|.+..|.++|..++.+ .+++.|+|-
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s----GNqlfv~dk 155 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS----GNQLFVFDK 155 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe----CCEEEEECC
Confidence 42 123444443 23579999999999888763 589999985
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.6 Score=46.22 Aligned_cols=148 Identities=11% Similarity=0.113 Sum_probs=82.0
Q ss_pred CCeEEEEEccCCCEEEEEe-----------CCC-cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 419 QEVCGLKWSPDGRYLASGG-----------NDN-LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 419 ~~V~~l~~spdg~~lasgs-----------~Dg-~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
.....|+|.++|+++++-. ..+ .|.+++-..+.... .....+.........+++.+++ ++++.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~--d~~~vfa~~l~~p~Gi~~~~~G--lyV~~- 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY--DKSNVFAEELSMVTGLAVAVGG--VYVAT- 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc--ceeEEeecCCCCccceeEecCC--EEEeC-
Confidence 3466789999999777643 223 67777654432111 2223343334456889998877 66653
Q ss_pred ccCCCeEEEE-ECCCC-----ce--e-EEEcC-----CCCeEEEEEcCCCCeEEEEEecC-----------------CCe
Q psy4876 487 GTADRHIYFW-NVSSG-----AC--L-DSIDT-----KSQVCALLWNSDYKELVSAHGFA-----------------QNQ 535 (609)
Q Consensus 487 Gs~Dg~I~iw-d~~t~-----~~--~-~~~~~-----~~~v~sl~~s~~g~~l~~~sG~~-----------------dg~ 535 (609)
...|..| |.... +. + ..+.. +.....+.|.|+|.+.++..... .+.
T Consensus 89 ---~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 89 ---PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred ---CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 3345444 54321 11 1 12222 23477899999997666542110 134
Q ss_pred EEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECC
Q psy4876 536 LIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGAD 575 (609)
Q Consensus 536 I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D 575 (609)
|.-++...++ +..+.........++|+++|.++++-..+
T Consensus 166 i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 166 LFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EEEEecCCCe-EEEEecCcCCCccceECCCCCEEEEccCC
Confidence 5555554433 22332222335789999999987765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=8 Score=40.33 Aligned_cols=151 Identities=14% Similarity=0.110 Sum_probs=84.8
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEE
Q psy4876 418 TQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWN 497 (609)
Q Consensus 418 ~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd 497 (609)
...+.++.+.+++.+++++.. |.+..- .+.+.. ....+ ...-...+.++.+.+++. ++++| ..|.+++=.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s-~~~gg~--tW~~~--~~~~~~~l~~i~~~~~g~-~~~vg---~~G~~~~~s 241 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYST-WEPGQT--AWTPH--QRNSSRRLQSMGFQPDGN-LWMLA---RGGQIRFND 241 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEE-cCCCCC--eEEEe--eCCCcccceeeeEcCCCC-EEEEe---cCCEEEEcc
Confidence 457889999999877766654 555432 111210 01111 223345788999999875 55555 456665323
Q ss_pred CCCCceeEEEcC-----CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe---CCCCCEEEEEEeCCCCEE
Q psy4876 498 VSSGACLDSIDT-----KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH---GHSARVLNLAMSPDETTV 569 (609)
Q Consensus 498 ~~t~~~~~~~~~-----~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~L 569 (609)
...|..-..... ...+.++.+.+++..+++ | .+|.|. .....++.-.... .-......+.|..++..+
T Consensus 242 ~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~--G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (334)
T PRK13684 242 PDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAG--G-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGF 317 (334)
T ss_pred CCCCCccccccCCccccccceeeEEEcCCCCEEEE--c-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceE
Confidence 444443222221 235788999998876665 3 466554 3344443333322 122357788887666654
Q ss_pred EEEECCCCEEEEEc
Q psy4876 570 LSAGADETLRLWKI 583 (609)
Q Consensus 570 ~s~s~Dg~I~iWdl 583 (609)
+ ++..|.|--|+-
T Consensus 318 ~-~G~~G~il~~~~ 330 (334)
T PRK13684 318 V-LGQRGVLLRYVG 330 (334)
T ss_pred E-ECCCceEEEecC
Confidence 4 567788877653
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.25 E-value=6.5 Score=39.18 Aligned_cols=188 Identities=11% Similarity=0.133 Sum_probs=116.1
Q ss_pred eeeeeecC--CCCeEEEEEccCCCEEEEEeCCC--eEEEEeCCCCeeEEEecCCC-CceEEEEe-cCCEEEEEecCCeEE
Q psy4876 327 DHLMDLEG--NENVCSVAWIQEGYMLGVGTSLG--TVQLWDVSAKKKCRTMDGHD-VRVGALAW-NTYILSSGSRCGNIV 400 (609)
Q Consensus 327 ~~l~~~~h--~~~V~~v~~spdg~~Lasgs~dg--~I~iwd~~~~~~~~~l~~h~-~~V~~l~~-~~~~L~sgs~dg~I~ 400 (609)
+.+.+++| ..-...+.|..+|.++-+.+.-| .|+.+|+.+++.+....-.. ---..++. ++.+....-.++...
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEE
Confidence 34445554 34556788878887777776666 79999999998766544222 11223333 455555566788999
Q ss_pred EEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC--Cc---ccEEEEEEc
Q psy4876 401 HHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR--HQ---AAVKAIAWC 475 (609)
Q Consensus 401 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~--h~---~~V~~l~~s 475 (609)
+||..+- +.+..+. ...+=.+++ .||+.|+.......|+++|..+. +....+.. .. ..++.+.|.
T Consensus 114 ~yd~~tl-~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f------~~~~~i~V~~~g~pv~~LNELE~i 183 (264)
T PF05096_consen 114 VYDPNTL-KKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETF------KEVRTIQVTDNGRPVSNLNELEYI 183 (264)
T ss_dssp EEETTTT-EEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-------SEEEEEE-EETTEE---EEEEEEE
T ss_pred EEccccc-eEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCccc------ceEEEEEEEECCEECCCcEeEEEE
Confidence 9999886 4555554 345667777 46677777666788999998876 33333322 22 245667776
Q ss_pred CCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC----------------CCCeEEEEEcCCCCeEEEE
Q psy4876 476 PWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT----------------KSQVCALLWNSDYKELVSA 528 (609)
Q Consensus 476 p~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~----------------~~~v~sl~~s~~g~~l~~~ 528 (609)
. | .++|-- -....|...|..+|+.+..++. ..-...|+|.+....+++.
T Consensus 184 ~-G-~IyANV--W~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 184 N-G-KIYANV--WQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp T-T-EEEEEE--TTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred c-C-EEEEEe--CCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 3 3 566654 3677888889999998887641 1247899999988887775
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=93.98 E-value=3.5 Score=39.93 Aligned_cols=140 Identities=14% Similarity=0.150 Sum_probs=84.5
Q ss_pred CCCeEEEEEccCCCEEEEEeCC----------CeEEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEE
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSL----------GTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVH 401 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~d----------g~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~i 401 (609)
......-..+|+|++.+ |... |.++.|-.. ..+..+...-.--..++|+ ..+.++-+.+-+|.-
T Consensus 108 knR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred hcccccCccCCCCceee-eeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 34455667789999844 4432 334444322 1222222222334567884 234556666777877
Q ss_pred EE--cCCCC----eeEEEEcc----CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEE
Q psy4876 402 HD--VRSRD----HKVALLQN----HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKA 471 (609)
Q Consensus 402 wd--~~~~~----~~~~~~~~----h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~ 471 (609)
|| ..++. ..+..++. .....-++++..+|++.+++-+.++|...|..+| +.+..+.-....|++
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG------K~L~eiklPt~qits 258 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG------KILLEIKLPTPQITS 258 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC------cEEEEEEcCCCceEE
Confidence 87 44432 12222222 1123345666778999999999999999999999 778888878889999
Q ss_pred EEEcCCCCcEEE
Q psy4876 472 IAWCPWSPNVLA 483 (609)
Q Consensus 472 l~~sp~~~~lla 483 (609)
++|---.-.++.
T Consensus 259 ccFgGkn~d~~y 270 (310)
T KOG4499|consen 259 CCFGGKNLDILY 270 (310)
T ss_pred EEecCCCccEEE
Confidence 999643223443
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.19 Score=35.93 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=28.7
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 554 SARVLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 554 ~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
...|..++|+|...+||.+..||.|.++++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999994
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=2.9 Score=45.98 Aligned_cols=145 Identities=11% Similarity=0.000 Sum_probs=71.7
Q ss_pred cCCCEEEEEeCC--CeEEEEeCCCCeeE--EEecCCCCceEEEEecCCEEEEEecCC---eEEEEEcCCCCeeE-EEEcc
Q psy4876 345 QEGYMLGVGTSL--GTVQLWDVSAKKKC--RTMDGHDVRVGALAWNTYILSSGSRCG---NIVHHDVRSRDHKV-ALLQN 416 (609)
Q Consensus 345 pdg~~Lasgs~d--g~I~iwd~~~~~~~--~~l~~h~~~V~~l~~~~~~L~sgs~dg---~I~iwd~~~~~~~~-~~~~~ 416 (609)
-+|...++|+.+ ..+..||..+++-. ..+.........+..++.+.+.|+.++ .+..||..+..-.. ..+..
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence 356677777754 35888887665332 222222223344556888888888654 36678877642111 01111
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC---CCeE
Q psy4876 417 HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA---DRHI 493 (609)
Q Consensus 417 h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~---Dg~I 493 (609)
..... +++ .-+|.+.+.|+ .+.+||..+..- ..+..+.........+.+ +..+++.||.+. -..+
T Consensus 397 ~r~~~-~~~-~~~~~IYv~GG---~~e~ydp~~~~W----~~~~~m~~~r~~~~~~v~---~~~IYviGG~~~~~~~~~v 464 (480)
T PHA02790 397 PHYKS-CAL-VFGRRLFLVGR---NAEFYCESSNTW----TLIDDPIYPRDNPELIIV---DNKLLLIGGFYRGSYIDTI 464 (480)
T ss_pred ccccc-eEE-EECCEEEEECC---ceEEecCCCCcE----eEcCCCCCCccccEEEEE---CCEEEEECCcCCCcccceE
Confidence 11111 222 23566666663 577898876532 222222211222222332 336777775211 1345
Q ss_pred EEEECCCC
Q psy4876 494 YFWNVSSG 501 (609)
Q Consensus 494 ~iwd~~t~ 501 (609)
..||..++
T Consensus 465 e~Yd~~~~ 472 (480)
T PHA02790 465 EVYNNRTY 472 (480)
T ss_pred EEEECCCC
Confidence 66666543
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=93.71 E-value=15 Score=41.46 Aligned_cols=163 Identities=14% Similarity=0.182 Sum_probs=89.1
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEE--EecC-CCC------ceEEEEe--cCCEEEEEec-CC---
Q psy4876 333 EGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCR--TMDG-HDV------RVGALAW--NTYILSSGSR-CG--- 397 (609)
Q Consensus 333 ~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~--~l~~-h~~------~V~~l~~--~~~~L~sgs~-dg--- 397 (609)
.-.+.|..|.|..+++.+++...+|.|.+||...+.... .+.. +.. -|..... ...++++.+. ++
T Consensus 127 kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 127 KLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred EcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence 357889999999999999999999999999994332211 2221 222 2222221 1345555544 32
Q ss_pred eEEEEEcCCCCeeEEEEc---cCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-----Cc-c
Q psy4876 398 NIVHHDVRSRDHKVALLQ---NHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-----HQ-A 467 (609)
Q Consensus 398 ~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-----h~-~ 467 (609)
..+++.+......+..+. .+........|.- +|.+..- .++.|.+|++-.. +..+++.- .. .
T Consensus 207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f------~~~~tI~l~~ii~~~~~ 278 (670)
T PF10395_consen 207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNF------QIQKTISLPSIIDKESD 278 (670)
T ss_pred EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCc------eEEEEEEechhhccccc
Confidence 356777722222232222 1222222223332 5554333 5689999998765 33332221 11 1
Q ss_pred cEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc
Q psy4876 468 AVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID 508 (609)
Q Consensus 468 ~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~ 508 (609)
.+.++. .|...++|.+ .+..|++.|+.-...+.+++
T Consensus 279 ~~vSl~-~~s~nRvLLs----~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 279 DLVSLK-PPSPNRVLLS----VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred cceEee-cCCCCeEEEE----cCCEEEEEeehhhhhhhhhh
Confidence 222322 2333456664 58999999998777766665
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=93.68 E-value=2.7 Score=47.09 Aligned_cols=181 Identities=9% Similarity=0.038 Sum_probs=95.1
Q ss_pred CeEEEEeCCCCeeEEEecCCCCceEEEEec-CCEEEEEecCCeEEEEEcCCCCeeE--EEEccCCCCeEEEEEccCCCEE
Q psy4876 357 GTVQLWDVSAKKKCRTMDGHDVRVGALAWN-TYILSSGSRCGNIVHHDVRSRDHKV--ALLQNHTQEVCGLKWSPDGRYL 433 (609)
Q Consensus 357 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~~~~~~--~~~~~h~~~V~~l~~spdg~~l 433 (609)
-.|+||+.. |..+..+.-....+..+.|+ ...|++...+|++++|++-...... .-.......|..+.+..+|-
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV-- 140 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV-- 140 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce--
Confidence 458888875 56555554444588899995 6889999999999999986532111 11122233455555555663
Q ss_pred EEEeCCCcEEEEe-CCCCCCCCCccceEeecC-CcccEEEEEEc--CCC--CcEE-EEEeccCC-CeEEEEECCCCceeE
Q psy4876 434 ASGGNDNLLNIWS-GVPGQHTFSTQPIHSLSR-HQAAVKAIAWC--PWS--PNVL-ASGGGTAD-RHIYFWNVSSGACLD 505 (609)
Q Consensus 434 asgs~Dg~I~iwd-~~~~~~~~~~~~~~~~~~-h~~~V~~l~~s--p~~--~~ll-asggGs~D-g~I~iwd~~t~~~~~ 505 (609)
++-..+|.|.+-. .... .+.++.. ......+-+|. +++ ..++ ...- .. -.+..-+....+...
T Consensus 141 avlt~~g~v~~i~~~~~~-------~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~--~v~~~~~q~~~~~~q~~~ 211 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEEP-------KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV--AVGLHICQVEESRVQLHA 211 (829)
T ss_pred EEEecCCcEEEEcCCCcc-------hhhhCCCCCCccCCCcceeEecCCCcceeEEeech--hhhhcccceecccccccc
Confidence 3333445554433 2221 1122211 11111112222 111 1111 1110 00 011111111122222
Q ss_pred EEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe
Q psy4876 506 SIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH 551 (609)
Q Consensus 506 ~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~ 551 (609)
-...++.+..+..|+++++|+.-+ ..|.|.+-+....+++.++.
T Consensus 212 ~~~~~~~~~ki~VS~n~~~laLyt--~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 212 LSWPNSSVVKISVSPNRRFLALYT--ETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred cCCCCceEEEEEEcCCcceEEEEe--cCCcEEEEecchhhhhhccC
Confidence 222347788999999999999865 78999998887777666654
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.29 E-value=1.6 Score=46.59 Aligned_cols=143 Identities=16% Similarity=0.204 Sum_probs=92.2
Q ss_pred ccCCCEEEE-EeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---------CCEEEEEecCCeEEEEEcCCCCeeEEE
Q psy4876 344 IQEGYMLGV-GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---------TYILSSGSRCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 344 spdg~~Las-gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---------~~~L~sgs~dg~I~iwd~~~~~~~~~~ 413 (609)
..+..+|+. |.....++-.|++.|+.+.....|...| +.|+ ...-+.|-.+..|.-.|.+..+..+..
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence 334455443 4444567777888999998888777663 4442 223345555666777777765433322
Q ss_pred EccCCCCeEEEEEcc----CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC
Q psy4876 414 LQNHTQEVCGLKWSP----DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA 489 (609)
Q Consensus 414 ~~~h~~~V~~l~~sp----dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~ 489 (609)
.. ....++.-.|+. ...++|+|+..|.|++||--.- .....+.+-..+|..+....+|.++|++|
T Consensus 554 ~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~------rAKtalP~lG~aIk~idvta~Gk~ilaTC---- 622 (776)
T COG5167 554 VE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGK------RAKTALPGLGDAIKHIDVTANGKHILATC---- 622 (776)
T ss_pred ee-ehhccccccccccccccCceEEEecCCCceeeehhhcc------hhhhcCcccccceeeeEeecCCcEEEEee----
Confidence 21 223333333332 3448999999999999996543 23334455667899999999999999987
Q ss_pred CCeEEEEECC
Q psy4876 490 DRHIYFWNVS 499 (609)
Q Consensus 490 Dg~I~iwd~~ 499 (609)
...|.+-|+.
T Consensus 623 k~yllL~d~~ 632 (776)
T COG5167 623 KNYLLLTDVP 632 (776)
T ss_pred cceEEEEecc
Confidence 6778887775
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=93.15 E-value=7.7 Score=37.28 Aligned_cols=109 Identities=15% Similarity=0.244 Sum_probs=66.9
Q ss_pred CEEEEEecCCeEEEEEcCCCC-eeEEEEccCCCCeEEEEEccCCCEEEEEeCCC------cEEEE---eCCCCCC-CC--
Q psy4876 388 YILSSGSRCGNIVHHDVRSRD-HKVALLQNHTQEVCGLKWSPDGRYLASGGNDN------LLNIW---SGVPGQH-TF-- 454 (609)
Q Consensus 388 ~~L~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg------~I~iw---d~~~~~~-~~-- 454 (609)
+.|+.+...+.|.+|++.... .....+. .-+.|..+.++..|++|++--.+. .+++| ....... ..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 666665677889999998433 3344444 347899999999999999964432 45554 2221100 00
Q ss_pred --------------CccceEeec-CCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 455 --------------STQPIHSLS-RHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 455 --------------~~~~~~~~~-~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
....+..++ .-...+.+++-+|-..+|++. .++.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg----~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG----CGNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE----cCCEEEEEEEEEE
Confidence 000011111 113466789999988888885 4789999987643
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=92.99 E-value=12 Score=38.31 Aligned_cols=226 Identities=13% Similarity=0.136 Sum_probs=105.1
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEec---CCCCceEEE-EecCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 337 NVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMD---GHDVRVGAL-AWNTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l-~~~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
...+|.|..+ ..+++| ..| +.+...+.|+.-..+. .-......+ +.+......++..|.|+.= .+.+..-..
T Consensus 63 ~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T-~DgG~tW~~ 138 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRT-TDGGKTWQA 138 (302)
T ss_dssp EEEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEE-SSTTSSEEE
T ss_pred eEEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEe-CCCCCCeeE
Confidence 4667777543 344444 445 4444444454433332 112222333 3344444444555654432 122222223
Q ss_pred EEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCe
Q psy4876 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH 492 (609)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~ 492 (609)
....-.+.+..+.-++||++++++.....+.-||--.. .-...-......|.+|.|.|++. +.+.+ ..+.
T Consensus 139 ~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~------~w~~~~r~~~~riq~~gf~~~~~-lw~~~---~Gg~ 208 (302)
T PF14870_consen 139 VVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT------TWQPHNRNSSRRIQSMGFSPDGN-LWMLA---RGGQ 208 (302)
T ss_dssp EE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S------S-EEEE--SSS-EEEEEE-TTS--EEEEE---TTTE
T ss_pred cccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc------cceEEccCccceehhceecCCCC-EEEEe---CCcE
Confidence 33445577889999999999999877666667875432 11112223457899999999974 54443 6788
Q ss_pred EEEEEC-CCCceeEE--Ec--C-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe---CCCCCEEEEEEe
Q psy4876 493 IYFWNV-SSGACLDS--ID--T-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH---GHSARVLNLAMS 563 (609)
Q Consensus 493 I~iwd~-~t~~~~~~--~~--~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~---~h~~~V~~l~~s 563 (609)
|++=+. ...+.-.. .. . ...+..++|.+++...++ | ..|.|. .....++.-..-. .-...+..|.|.
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~--g-g~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~ 284 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAV--G-GSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFV 284 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEE--E-STT-EE-EESSTTSS-EE-GGGTTSSS---EEEEE
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEE--e-CCccEE-EeCCCCccceECccccCCCCceEEEEEc
Confidence 888772 22222111 11 1 235899999998777765 3 244333 3333333322222 223457888887
Q ss_pred CCCCEEEEEECCCCEEEE
Q psy4876 564 PDETTVLSAGADETLRLW 581 (609)
Q Consensus 564 pdg~~L~s~s~Dg~I~iW 581 (609)
.+. .-+..+.||.|--|
T Consensus 285 ~~~-~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 285 NPD-KGFVLGQDGVLLRY 301 (302)
T ss_dssp ETT-EEEEE-STTEEEEE
T ss_pred CCC-ceEEECCCcEEEEe
Confidence 554 45555678877654
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=92.82 E-value=11 Score=37.51 Aligned_cols=143 Identities=15% Similarity=0.153 Sum_probs=84.2
Q ss_pred ceEEEEe--cCCEEEEEe---cCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEe-CCCCCC
Q psy4876 379 RVGALAW--NTYILSSGS---RCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWS-GVPGQH 452 (609)
Q Consensus 379 ~V~~l~~--~~~~L~sgs---~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd-~~~~~~ 452 (609)
.+...++ ++..++... ....++++..... ....+. ...+..-.|++++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 4555666 566555544 3334555554432 222222 23788889999988777777666667763 333311
Q ss_pred CCCccceEeecCCc-ccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC---CCc------eeEEE-cCCCCeEEEEEcCC
Q psy4876 453 TFSTQPIHSLSRHQ-AAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS---SGA------CLDSI-DTKSQVCALLWNSD 521 (609)
Q Consensus 453 ~~~~~~~~~~~~h~-~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~---t~~------~~~~~-~~~~~v~sl~~s~~ 521 (609)
..+..-.... ..|.++.++|||..+++......++.|.+--+. .+. .+... .....+..+.|.++
T Consensus 101 ----~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 101 ----EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred ----eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 1111111111 289999999999988776532346777776553 231 11111 12357899999999
Q ss_pred CCeEEEEE
Q psy4876 522 YKELVSAH 529 (609)
Q Consensus 522 g~~l~~~s 529 (609)
+.+++...
T Consensus 177 ~~L~V~~~ 184 (253)
T PF10647_consen 177 STLVVLGR 184 (253)
T ss_pred CEEEEEeC
Confidence 98877754
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=92.52 E-value=3.2 Score=47.69 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=26.1
Q ss_pred CCCCEEEEEEeCC---CCEEEEEECCCCEEEEEcCCCc
Q psy4876 553 HSARVLNLAMSPD---ETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 553 h~~~V~~l~~spd---g~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
+...|..+.|+|. +..|+.-..|+++|+||+....
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 4456788888885 4688888888888888886533
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=92.32 E-value=15 Score=37.86 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=54.8
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCee---EEEecC---CCCceEEEEecCCEEEEEecC-----CeEEEEEcCCCCe
Q psy4876 346 EGYMLGVGTSL-----GTVQLWDVSAKKK---CRTMDG---HDVRVGALAWNTYILSSGSRC-----GNIVHHDVRSRDH 409 (609)
Q Consensus 346 dg~~Lasgs~d-----g~I~iwd~~~~~~---~~~l~~---h~~~V~~l~~~~~~L~sgs~d-----g~I~iwd~~~~~~ 409 (609)
++.++++|+.+ ..+..||+.+.+. ...+.. ......+...++.+.+.|+.. ..+..||+.+..-
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 45666667654 3577777766543 122221 112233344577777777742 3578888876531
Q ss_pred e-EEEEccCCCCeEEEEEccCCCEEEEEeCCC----cEEEEeCCCC
Q psy4876 410 K-VALLQNHTQEVCGLKWSPDGRYLASGGNDN----LLNIWSGVPG 450 (609)
Q Consensus 410 ~-~~~~~~h~~~V~~l~~spdg~~lasgs~Dg----~I~iwd~~~~ 450 (609)
. +..+.. .......+...++++.+.|+.++ .+.+||..+.
T Consensus 152 ~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 152 FELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 1 111111 11122222334677788887654 3568888765
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG2377|consensus | Back alignment and domain information |
|---|
Probab=92.26 E-value=4.6 Score=42.71 Aligned_cols=152 Identities=13% Similarity=0.205 Sum_probs=91.8
Q ss_pred EEEEec-CCEEEEEecCCeEEEEEcCCCC--eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCcc
Q psy4876 381 GALAWN-TYILSSGSRCGNIVHHDVRSRD--HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQ 457 (609)
Q Consensus 381 ~~l~~~-~~~L~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~ 457 (609)
+.+-|| .+..+.+...|.+.-|-+.... .++..-....++|.++.||+|.+.||+--.|+.|.+++....+.. ..
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~--l~ 103 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ--LE 103 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh--hH
Confidence 345553 3444444455666666554332 233333345679999999999999999999999999998543210 12
Q ss_pred ceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC-CceeEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCe
Q psy4876 458 PIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS-GACLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQ 535 (609)
Q Consensus 458 ~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t-~~~~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~ 535 (609)
..++.+.....|....|.... .+... .+.-+-+|-+.. ...++..+. .-.|.-..|+++...++.++|-..++
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s~-e~A~i----~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~ 178 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSST-EIAFI----TDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENV 178 (657)
T ss_pred HHHHhccCcceeEEEEEecCe-eEEEE----ecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccc
Confidence 223333445568899998764 33333 244566665542 222333333 34788889999988888776644444
Q ss_pred EEEE
Q psy4876 536 LIIW 539 (609)
Q Consensus 536 I~Iw 539 (609)
+.=+
T Consensus 179 lnpf 182 (657)
T KOG2377|consen 179 LNPF 182 (657)
T ss_pred cccE
Confidence 4333
|
|
| >KOG4460|consensus | Back alignment and domain information |
|---|
Probab=92.24 E-value=3.3 Score=44.48 Aligned_cols=93 Identities=15% Similarity=0.074 Sum_probs=56.6
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec-CCEEEEEecCCeEEEEEcCCCCeeEEEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN-TYILSSGSRCGNIVHHDVRSRDHKVALL 414 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~~~~~~~~~ 414 (609)
-.|..|..++.|..++..+.+|.+..+=......-..+......|.|=.+. +..|++.+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-------------------- 163 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-------------------- 163 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC--------------------
Confidence 467888999999999999998865544322222223333333334433331 11111111
Q ss_pred ccCCCCeEEEEEccCC---CEEEEEeCCCcEEEEeCCCC
Q psy4876 415 QNHTQEVCGLKWSPDG---RYLASGGNDNLLNIWSGVPG 450 (609)
Q Consensus 415 ~~h~~~V~~l~~spdg---~~lasgs~Dg~I~iwd~~~~ 450 (609)
..-.+..++|+|+. ..|..-+.|++|++||+...
T Consensus 164 --~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 164 --TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred --CceeeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence 11235567899864 57888888999999999866
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.87 E-value=18 Score=37.70 Aligned_cols=151 Identities=12% Similarity=0.083 Sum_probs=82.7
Q ss_pred CCceEEEEec-CCEEEEEecCCeEEEEEcCCCCe-eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCC
Q psy4876 377 DVRVGALAWN-TYILSSGSRCGNIVHHDVRSRDH-KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTF 454 (609)
Q Consensus 377 ~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~ 454 (609)
...+..+.+. +..++..+..|.+..- .+.+.. -......-...+.++.+.++++.+++| ..|.+.+=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s-- 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES-- 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc--
Confidence 4567777773 3344455556765532 112211 122223345678999999999877765 457665323343321
Q ss_pred CccceEee-cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC----CCCeEEEEEcCCCCeEEEEE
Q psy4876 455 STQPIHSL-SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT----KSQVCALLWNSDYKELVSAH 529 (609)
Q Consensus 455 ~~~~~~~~-~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~----~~~v~sl~~s~~g~~l~~~s 529 (609)
.+.+..- ......+.++.+.+++ .++++| .+|.|. .....|+.-..... ......+.|..+++.+++
T Consensus 248 -W~~~~~~~~~~~~~l~~v~~~~~~-~~~~~G---~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 319 (334)
T PRK13684 248 -WSKPIIPEITNGYGYLDLAYRTPG-EIWAGG---GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-- 319 (334)
T ss_pred -cccccCCccccccceeeEEEcCCC-CEEEEc---CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE--
Confidence 1111110 0112357888999866 466665 466555 34444444333321 235778888888777776
Q ss_pred ecCCCeEEEEE
Q psy4876 530 GFAQNQLIIWK 540 (609)
Q Consensus 530 G~~dg~I~Iwd 540 (609)
| ..|.|..|+
T Consensus 320 G-~~G~il~~~ 329 (334)
T PRK13684 320 G-QRGVLLRYV 329 (334)
T ss_pred C-CCceEEEec
Confidence 4 577777665
|
|
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=91.66 E-value=8.7 Score=43.27 Aligned_cols=173 Identities=20% Similarity=0.240 Sum_probs=88.4
Q ss_pred eEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeee--c-CCCCeEEEEEccC
Q psy4876 271 YLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL--E-GNENVCSVAWIQE 346 (609)
Q Consensus 271 ~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~-h~~~V~~v~~spd 346 (609)
.+-.+.|+.+. ++.+..+|.+++|++.. ...+.. .+ + ....|..+.+..+
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~g-------------------------e~ie~~-svg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLG-------------------------EFIESN-SVGFESQMSDIVECRFFHN 138 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecch-------------------------hhhccc-ccccccccCceeEEEEecC
Confidence 35669999985 99999999999999875 222221 11 1 2223444444445
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecC-CCCceEEEEe---cC----CEEEEEecCCeEEEEEcCCCCeeEEEEccCC
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDG-HDVRVGALAW---NT----YILSSGSRCGNIVHHDVRSRDHKVALLQNHT 418 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~---~~----~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 418 (609)
|- ++-..+|.|.+-.-.....++.+.. ......+-+| .+ ..++-...--...++...........+....
T Consensus 139 GV--avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~ 216 (829)
T KOG2280|consen 139 GV--AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPN 216 (829)
T ss_pred ce--EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCC
Confidence 53 3333445554443222222333332 1111111233 11 2222111100011222222211222222223
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec--CCcccEEEEEEcCCC
Q psy4876 419 QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS--RHQAAVKAIAWCPWS 478 (609)
Q Consensus 419 ~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~ 478 (609)
+.+..+.+||++++|+--..+|.|.+-+.+.. +....+. .|. +-..++|+.+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~------~~lce~~~~~~~-~p~qm~Wcgnd 271 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLS------QILCEFNCTDHD-PPKQMAWCGND 271 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchh------hhhhccCCCCCC-chHhceeecCC
Confidence 56888999999999999999999999888765 3333333 232 23478887654
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.50 E-value=8.3 Score=42.45 Aligned_cols=186 Identities=10% Similarity=0.040 Sum_probs=84.3
Q ss_pred ecCCEEEEEecCC-----eEEEEEcCCCCe-eEEEEccCCCCeEEEEEccCCCEEEEEeCC--CcEEEEeCCCCCCCCCc
Q psy4876 385 WNTYILSSGSRCG-----NIVHHDVRSRDH-KVALLQNHTQEVCGLKWSPDGRYLASGGND--NLLNIWSGVPGQHTFST 456 (609)
Q Consensus 385 ~~~~~L~sgs~dg-----~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spdg~~lasgs~D--g~I~iwd~~~~~~~~~~ 456 (609)
.++.++++|+.++ .+..||..+..- .+..+....... +++ .-+|.+.+.||.+ ..+..||..+...
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W---- 343 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAW---- 343 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeE----
Confidence 3566667776543 466777776421 111111111111 222 2367777888754 3578888765421
Q ss_pred cceEeecCCcccEEEEEEcCCCCcEEEEEecc-CCCeEEEEECCCCceeEEEcCCCCe-EEEEEcCCCCeEEEEEecCCC
Q psy4876 457 QPIHSLSRHQAAVKAIAWCPWSPNVLASGGGT-ADRHIYFWNVSSGACLDSIDTKSQV-CALLWNSDYKELVSAHGFAQN 534 (609)
Q Consensus 457 ~~~~~~~~h~~~V~~l~~sp~~~~llasggGs-~Dg~I~iwd~~t~~~~~~~~~~~~v-~sl~~s~~g~~l~~~sG~~dg 534 (609)
..+..+.........+.. +..+.+.||.. ....+..||..+.+-...-....+. ...+..-++ .|++. | |
T Consensus 344 ~~~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~-~IYv~-G---G 415 (480)
T PHA02790 344 VNMPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGR-RLFLV-G---R 415 (480)
T ss_pred EECCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECC-EEEEE-C---C
Confidence 111122111111122222 34688887521 1245778888765432211111111 111112233 34433 3 3
Q ss_pred eEEEEECCCCc--eEEEEeCCCCCEEEEEEeCCCCEEEEEECC-----CCEEEEEcCCC
Q psy4876 535 QLIIWKYPSLV--KVAELHGHSARVLNLAMSPDETTVLSAGAD-----ETLRLWKIFEK 586 (609)
Q Consensus 535 ~I~Iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~s~s~D-----g~I~iWdl~~~ 586 (609)
.+.+||..+.+ .+..+.........+. -+|+..+.||.+ .+|..||..++
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 56788876543 2222221112222222 367777888764 34667776543
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=91.07 E-value=31 Score=38.96 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=87.3
Q ss_pred CCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe-eEEEEc-cCCCCeEEEEEcc------CCCEEEEEeC-C---CcE
Q psy4876 377 DVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDH-KVALLQ-NHTQEVCGLKWSP------DGRYLASGGN-D---NLL 442 (609)
Q Consensus 377 ~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~-~~~~~~-~h~~~V~~l~~sp------dg~~lasgs~-D---g~I 442 (609)
...|..+.+ ++..+++...+|.|.+||...... .+..+. .+...+.-=+|-+ ...++++.+. + -.+
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 567888888 478999999999999999932211 111111 1222111112222 1234444333 2 246
Q ss_pred EEEeCCCCCCCCCccceEeec---CCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC-------CC
Q psy4876 443 NIWSGVPGQHTFSTQPIHSLS---RHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK-------SQ 512 (609)
Q Consensus 443 ~iwd~~~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-------~~ 512 (609)
+++.+.... ..+..+. .+........|+-..+.+..- .++.|.+|++..-+..+++... ..
T Consensus 209 kL~~l~~~~-----~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l----~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~ 279 (670)
T PF10395_consen 209 KLISLSNES-----SSIFELSSTILENFGLEDSKFCYQFGKLYQL----SKKTISSYSIPNFQIQKTISLPSIIDKESDD 279 (670)
T ss_pred EEEEeccCC-----cceEEeehheeccCCcccceEEEeCCEEEEE----eCCEEEEEEcCCceEEEEEEechhhcccccc
Confidence 777772111 2233332 222233344444433344443 4789999999888877777644 23
Q ss_pred eEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEE
Q psy4876 513 VCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL 550 (609)
Q Consensus 513 v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l 550 (609)
+.++.--...+.|++ .++.|++.|+.-...+.++
T Consensus 280 ~vSl~~~s~nRvLLs----~~nkIyLld~~~~siLse~ 313 (670)
T PF10395_consen 280 LVSLKPPSPNRVLLS----VNNKIYLLDLKFESILSEF 313 (670)
T ss_pred ceEeecCCCCeEEEE----cCCEEEEEeehhhhhhhhh
Confidence 444443334444444 4899999998655554444
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >KOG2377|consensus | Back alignment and domain information |
|---|
Probab=90.88 E-value=3.6 Score=43.52 Aligned_cols=115 Identities=14% Similarity=0.217 Sum_probs=79.1
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeE----EEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKC----RTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRD 408 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~----~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~ 408 (609)
..++|.++.|++|.+.||+--.+.+|.+++....+.. ...+.....|....| +..-++.....| +-+|.+....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pek 143 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEK 143 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhh
Confidence 6679999999999999999999999999998543322 222334556888899 456666655544 5666655444
Q ss_pred eeEEEEccCCCCeEEEEEccCCCEEEEEe--CCCcEEEEeCCC
Q psy4876 409 HKVALLQNHTQEVCGLKWSPDGRYLASGG--NDNLLNIWSGVP 449 (609)
Q Consensus 409 ~~~~~~~~h~~~V~~l~~spdg~~lasgs--~Dg~I~iwd~~~ 449 (609)
..++..+.|.-.|.-..|.++.+.+.-++ ..+++.=+-+++
T Consensus 144 rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 144 RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 45666778888999999999887644333 344444444443
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=90.76 E-value=22 Score=37.72 Aligned_cols=92 Identities=12% Similarity=0.035 Sum_probs=42.8
Q ss_pred CCCEEEEEe-CCCeEEEEeCCCC-eeEE---EecC-CCCceEEEEecCCEEEEEecCC-----------eEEEEEcCCCC
Q psy4876 346 EGYMLGVGT-SLGTVQLWDVSAK-KKCR---TMDG-HDVRVGALAWNTYILSSGSRCG-----------NIVHHDVRSRD 408 (609)
Q Consensus 346 dg~~Lasgs-~dg~I~iwd~~~~-~~~~---~l~~-h~~~V~~l~~~~~~L~sgs~dg-----------~I~iwd~~~~~ 408 (609)
+++..+.|+ .+..+.++|+... .... .+.. .......+..++.+.+.|+... .+..||..+..
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence 343333333 3445777887532 1122 2211 1122234455777888877542 46778877642
Q ss_pred eeEEEEccC-CCCe--EEEEEccCCCEEEEEeCC
Q psy4876 409 HKVALLQNH-TQEV--CGLKWSPDGRYLASGGND 439 (609)
Q Consensus 409 ~~~~~~~~h-~~~V--~~l~~spdg~~lasgs~D 439 (609)
-..+... .... .+.+..-++.+.+.|+.+
T Consensus 118 --W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 118 --WQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred --EEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 1111111 1111 112221467777887754
|
|
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=90.66 E-value=0.04 Score=58.05 Aligned_cols=142 Identities=19% Similarity=0.310 Sum_probs=98.7
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 422 CGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 422 ~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
-...|-+.+.-++.++.+..|..||-... ..... ...+....++|..+++.+++.+. ..+.+.+||+.+.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq-------~~le~-n~tg~aldm~wDkegdvlavlAe--k~~piylwd~n~e 107 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ-------VILEL-NPTGKALDMAWDKEGDVLAVLAE--KTGPIYLWDVNSE 107 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcc-------eeccc-CCchhHhhhhhccccchhhhhhh--cCCCeeechhhhh
Confidence 34578887777888888899999986532 22222 23445567889888877766653 7899999999753
Q ss_pred cee-EEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCC
Q psy4876 502 ACL-DSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADE 576 (609)
Q Consensus 502 ~~~-~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg 576 (609)
.-. -.+.....-.-+.|++.+.+++. |...+.+.|++..+.+.+...-.|..++++++|.+.+. ++.++.|.
T Consensus 108 ytqqLE~gg~~s~sll~wsKg~~el~i--g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~ 180 (615)
T KOG2247|consen 108 YTQQLESGGTSSKSLLAWSKGTPELVI--GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDN 180 (615)
T ss_pred hHHHHhccCcchHHHHhhccCCccccc--cccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHH
Confidence 211 12222233334789999999998 66889999999887776655544999999999998765 44444444
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=90.17 E-value=2.1 Score=41.78 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=46.5
Q ss_pred ceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEE------Ec-------cCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q psy4876 379 RVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVAL------LQ-------NHTQEVCGLKWSPDGRYLASGGNDNLLNIW 445 (609)
Q Consensus 379 ~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~------~~-------~h~~~V~~l~~spdg~~lasgs~Dg~I~iw 445 (609)
.+..+..++++|++.+.+|.+++||+.+....... +. .....|..+.++.+|.-+++-++ |..+.|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEe
Confidence 44445556777777777777777777765321111 11 24567888888888877776654 788999
Q ss_pred eCCCC
Q psy4876 446 SGVPG 450 (609)
Q Consensus 446 d~~~~ 450 (609)
+..-+
T Consensus 93 ~~~L~ 97 (219)
T PF07569_consen 93 SPDLG 97 (219)
T ss_pred ccccc
Confidence 87654
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.1 Score=55.16 Aligned_cols=231 Identities=15% Similarity=0.134 Sum_probs=130.1
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--C-CEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--T-YILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~-~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
.......|-+.+.-+++++.+-.|..||-.. +..-... ..+....++|| + ..++.+-..+.+.+||+.+......
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL 112 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL 112 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence 3344567888887788888888899998543 3222222 34555667785 3 4455666788999999986532211
Q ss_pred EEcc-CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 413 LLQN-HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 413 ~~~~-h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
.+.+ |.... +.|++.+..++.|...|.+.|++..+. +.+-..-.|...+.+++|.+.+. .+.+ +.|.
T Consensus 113 E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgts------R~iiv~Gkh~RRgtq~av~lEd~--vil~--dcd~ 180 (615)
T KOG2247|consen 113 ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTS------RRIIVMGKHQRRGTQIAVTLEDY--VILC--DCDN 180 (615)
T ss_pred hccCcchHHH--HhhccCCccccccccccceEEEeccch------hhhhhhcccccceeEEEecccce--eeec--CcHH
Confidence 1111 22222 789999999999999999999998776 44444444889999999999763 3333 2455
Q ss_pred eEEEEECCCCceeEEEcCCCCeE--------EEEEcCCCCeEEEEEecCCCeEEEE--EC--CCCceEEEEeCCCCCEEE
Q psy4876 492 HIYFWNVSSGACLDSIDTKSQVC--------ALLWNSDYKELVSAHGFAQNQLIIW--KY--PSLVKVAELHGHSARVLN 559 (609)
Q Consensus 492 ~I~iwd~~t~~~~~~~~~~~~v~--------sl~~s~~g~~l~~~sG~~dg~I~Iw--d~--~~~~~~~~l~~h~~~V~~ 559 (609)
.+.+-... ++-....+.++... .=.|...|..+...- .+.+++. ++ ..+..-..++...+.+.|
T Consensus 181 ~L~v~~qe-geta~ltevggepdnm~~~y~k~n~w~kage~m~sVv---sgKkhl~yak~nE~D~pval~fq~~~gni~c 256 (615)
T KOG2247|consen 181 TLSVTTQE-GETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVV---SGKKHLMYAKYNELDEPVALQFQEKYGNIHC 256 (615)
T ss_pred HHHHhhhc-cceeeeeeccCccchhhhheeeeeccccccceeeeee---ecHHHHHHHhhcCCCCccceEeeecCCceeE
Confidence 44433322 22222222222111 112444444444432 1222221 11 111111245555677888
Q ss_pred EEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 560 LAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 560 l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
+.|--||..+. +-.-|.|..-...+
T Consensus 257 yrwylDg~i~i-gf~ag~iV~iS~h~ 281 (615)
T KOG2247|consen 257 YRWYLDGYILI-GFDAGYIVSISAHN 281 (615)
T ss_pred EEEeccccccc-cccceeEEEEeccc
Confidence 99988876443 33333343333333
|
|
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.37 Score=54.49 Aligned_cols=94 Identities=16% Similarity=0.204 Sum_probs=55.3
Q ss_pred ecCCCCceEEEEe-c---CCEEEEEecCCeEEEEEcCCCC------eeEEEEccCCCCeEEEEEcc---CCCEEEEEeCC
Q psy4876 373 MDGHDVRVGALAW-N---TYILSSGSRCGNIVHHDVRSRD------HKVALLQNHTQEVCGLKWSP---DGRYLASGGND 439 (609)
Q Consensus 373 l~~h~~~V~~l~~-~---~~~L~sgs~dg~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~sp---dg~~lasgs~D 439 (609)
+++..+.|..+.| + ++.. -.-|.+.|||++.-+ ..+.........+.-+.|.| +.-++..+-.+
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~---~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR---RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HhcCCCCcccccccccCChHHH---HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 3455667777777 2 2222 334678888876422 12333344445556666766 56678888888
Q ss_pred CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcC
Q psy4876 440 NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476 (609)
Q Consensus 440 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 476 (609)
+.|++...... ....+.+|...+..++|..
T Consensus 205 ~~i~lL~~~ra-------~~~l~rsHs~~~~d~a~~~ 234 (1283)
T KOG1916|consen 205 GEIRLLNINRA-------LRSLFRSHSQRVTDMAFFA 234 (1283)
T ss_pred CceeEeeechH-------HHHHHHhcCCCcccHHHHh
Confidence 89888777654 2234455776666665533
|
|
| >KOG1983|consensus | Back alignment and domain information |
|---|
Probab=89.68 E-value=8.9 Score=45.94 Aligned_cols=230 Identities=12% Similarity=0.090 Sum_probs=101.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCC-ceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDV-RVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~-~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
.....++|+|...++|.|+.+|.|+++-...-+.......... .+..+.| ..........+..+.+|...... .
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~---~ 112 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKT---G 112 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccc---e
Confidence 4566789999999999999999999997653332222211111 1121222 11222233344455555544321 1
Q ss_pred EEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCe
Q psy4876 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH 492 (609)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~ 492 (609)
. .+...+.+..-.+--.+ +-| ..+.+++||..-.... .-....+..+...+ ....++.-...... .+-.
T Consensus 113 ~--~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~s~~~~~~~~~----~~~~ 181 (993)
T KOG1983|consen 113 V--FLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLS--DLKYAGTESSNFVP-YESLSPTLSIEGLV----IDLD 181 (993)
T ss_pred e--ecCCcceeccCCCCcch-hcc-cCceeeEeeechhhhc--cceeccccccccce-eeeeccceeeeccc----cccc
Confidence 1 12333443333222223 444 7788888886532100 00000111111000 00000000000000 0111
Q ss_pred EEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEE
Q psy4876 493 IYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSA 572 (609)
Q Consensus 493 I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~ 572 (609)
-.+|-+.... .........+.+..+....+..+. +..+.+.+|+.........+. +....++.++..++++
T Consensus 182 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~ 252 (993)
T KOG1983|consen 182 TVLISLPDAY-LGLSLIEYESLQVLYYSPTKILIG---FNRGLVVIKDRASKYVQSAYL-----PNGQLESRDGSHFVSY 252 (993)
T ss_pred cceeeccccc-ccccccccccceeeeecCCCccee---eeeeeeeehhcccccchhhcc-----cccccCccCCceEEEE
Confidence 1111111001 000011223344444333333332 245666666654333322222 1222228899999999
Q ss_pred ECCCCEEEEEcCCCcc
Q psy4876 573 GADETLRLWKIFEKVK 588 (609)
Q Consensus 573 s~Dg~I~iWdl~~~~~ 588 (609)
-.||.+.+||+..+..
T Consensus 253 h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 253 HTDGSYAFWDVSSGKL 268 (993)
T ss_pred EecCCEEeeecCCCce
Confidence 9999999999998754
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=89.58 E-value=19 Score=41.01 Aligned_cols=112 Identities=13% Similarity=0.161 Sum_probs=70.2
Q ss_pred cEEEEEEcCCC-CcEEEEEeccCCCeEEEEECCC-------C-------------ceeEEEcCCCCeEEEEEc--CCCCe
Q psy4876 468 AVKAIAWCPWS-PNVLASGGGTADRHIYFWNVSS-------G-------------ACLDSIDTKSQVCALLWN--SDYKE 524 (609)
Q Consensus 468 ~V~~l~~sp~~-~~llasggGs~Dg~I~iwd~~t-------~-------------~~~~~~~~~~~v~sl~~s--~~g~~ 524 (609)
.|+.|.....| ..+|+.+ .+||.|.+|.+.+ . ++...+..+..+++++++ ...++
T Consensus 102 tIN~i~v~~lg~~EVLl~c--~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLC--TDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEE--ecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceE
Confidence 35555544433 3455555 4899999997621 0 012233455678999998 77788
Q ss_pred EEEEEecCCCeEEEEECCCC--ceEE-EEeCCCCCEEEEEEeCCC---C---EEEEEECCCCEEEEEc
Q psy4876 525 LVSAHGFAQNQLIIWKYPSL--VKVA-ELHGHSARVLNLAMSPDE---T---TVLSAGADETLRLWKI 583 (609)
Q Consensus 525 l~~~sG~~dg~I~Iwd~~~~--~~~~-~l~~h~~~V~~l~~spdg---~---~L~s~s~Dg~I~iWdl 583 (609)
+|+++ ....|.||-+... +... .-..|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 180 IAVSs--Ns~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSS--NSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEec--CCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88744 5566777655331 1111 111255678899997743 2 7888899999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG1898|consensus | Back alignment and domain information |
|---|
Probab=88.90 E-value=56 Score=38.57 Aligned_cols=102 Identities=24% Similarity=0.280 Sum_probs=60.5
Q ss_pred eEEEEECCCCceeEEEcCCC-----CeEEEEEcCCCCe-EEEEEec----------CCCeEEEEEC-CCCceEEEEeC--
Q psy4876 492 HIYFWNVSSGACLDSIDTKS-----QVCALLWNSDYKE-LVSAHGF----------AQNQLIIWKY-PSLVKVAELHG-- 552 (609)
Q Consensus 492 ~I~iwd~~t~~~~~~~~~~~-----~v~sl~~s~~g~~-l~~~sG~----------~dg~I~Iwd~-~~~~~~~~l~~-- 552 (609)
.|+++|..+++.+..+.... .++.+.|+..... ++.+.+. .+|.++.|+. ..++.+.-+..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 47888888887766665432 5777788765554 3333221 2445677765 34444433321
Q ss_pred CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhhhc
Q psy4876 553 HSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEIKN 596 (609)
Q Consensus 553 h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~~~ 596 (609)
-.+.|. ++.|-+.++.+| ....+++|++-.....++.+.+.
T Consensus 934 ~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~ 974 (1205)
T KOG1898|consen 934 IPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKF 974 (1205)
T ss_pred CCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhcc
Confidence 123443 445655544443 45699999998888777776654
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=88.62 E-value=2.5 Score=47.88 Aligned_cols=127 Identities=9% Similarity=0.145 Sum_probs=75.4
Q ss_pred eEEEEEec---CCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEc--
Q psy4876 271 YLNLIDWS---HFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWI-- 344 (609)
Q Consensus 271 ~v~~l~ws---p~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~s-- 344 (609)
.||.|... ... ++++..||.|.+|.++.--. .+.......... .....+.+...+.....+++++++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~-----~i~~~~~~~~~~--~~r~~i~P~f~~~v~~SaWGLdIh~~ 174 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIE-----AIERFSEDNDSG--FSRLKIKPFFHLRVGASAWGLDIHDY 174 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHH-----HHHhhccccccc--cccccCCCCeEeecCCceeEEEEEec
Confidence 35555433 333 66688899999998754100 000000000000 000122333444456789999998
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC--eeE-EEecCCCCceEEEEe-----cCC---EEEEEecCCeEEEEEc
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAK--KKC-RTMDGHDVRVGALAW-----NTY---ILSSGSRCGNIVHHDV 404 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~--~~~-~~l~~h~~~V~~l~~-----~~~---~L~sgs~dg~I~iwd~ 404 (609)
...++||+++....|.||-.... +.. ..-..|...|.+|+| ++. .|++++-.|.+.+|++
T Consensus 175 ~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 175 KKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred CcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 77899999999898988865432 111 111136778999999 222 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=88.59 E-value=34 Score=35.65 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=42.8
Q ss_pred CCEEEEEeC-CCeEEEEeCCC-C---eeEEEecC-CCCceEEEEecCCEEEEEecC-----------CeEEEEEcCCCCe
Q psy4876 347 GYMLGVGTS-LGTVQLWDVSA-K---KKCRTMDG-HDVRVGALAWNTYILSSGSRC-----------GNIVHHDVRSRDH 409 (609)
Q Consensus 347 g~~Lasgs~-dg~I~iwd~~~-~---~~~~~l~~-h~~~V~~l~~~~~~L~sgs~d-----------g~I~iwd~~~~~~ 409 (609)
++..++|+. ...+.++|+.. . ..+..+.. -......+..++.+.+.|+.+ ..+..||..+..
T Consensus 18 ~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~- 96 (346)
T TIGR03547 18 DKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS- 96 (346)
T ss_pred CEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCE-
Confidence 444444443 24567777632 1 22222221 112233445578888888753 246778877642
Q ss_pred eEEEEc-cCCCCeEEE-EE-ccCCCEEEEEeCC
Q psy4876 410 KVALLQ-NHTQEVCGL-KW-SPDGRYLASGGND 439 (609)
Q Consensus 410 ~~~~~~-~h~~~V~~l-~~-spdg~~lasgs~D 439 (609)
-..+. .......+. +. .-++++.+.|+.+
T Consensus 97 -W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 97 -WQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred -EecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 11111 111111111 11 3467788888764
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=88.27 E-value=68 Score=38.81 Aligned_cols=50 Identities=18% Similarity=0.023 Sum_probs=32.2
Q ss_pred CccccCCCccccccCCccCCceeEEEEEecCC--C-------eEEEEcCCeEEEEeCCC
Q psy4876 249 TSRYIPLTADRILDAPEIQNDYYLNLIDWSHF--N-------VLAVALGGSIYLWNGES 298 (609)
Q Consensus 249 ~~r~i~~~p~~il~ap~~~~~~~v~~l~wsp~--~-------lla~s~dg~I~iWd~~~ 298 (609)
..+++.+.|..+..+-+-.....|.|..+... + -||.+-||.++|=|.+-
T Consensus 327 ~n~~it~~Prvitt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfNy 385 (1899)
T KOG4659|consen 327 GNRLITEEPRVITTAMGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFNY 385 (1899)
T ss_pred cceEeecCCceEEEeccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccchh
Confidence 35778888877776665555555666655431 1 34577799999877643
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=87.97 E-value=62 Score=37.97 Aligned_cols=164 Identities=18% Similarity=0.291 Sum_probs=99.5
Q ss_pred cCCCCeEEEEEc---c----CCCEEEEEeCCCcEEEEeCCCCCC---------CCCccceEeecC---CcccEEEEEEcC
Q psy4876 416 NHTQEVCGLKWS---P----DGRYLASGGNDNLLNIWSGVPGQH---------TFSTQPIHSLSR---HQAAVKAIAWCP 476 (609)
Q Consensus 416 ~h~~~V~~l~~s---p----dg~~lasgs~Dg~I~iwd~~~~~~---------~~~~~~~~~~~~---h~~~V~~l~~sp 476 (609)
....+|..|+|. . ..++|++-. ...+.|+...-... .....++..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788888887 2 224666655 46677777221110 111234444432 234678999999
Q ss_pred CCCcEEEEEeccCCCeEEEEECCCCc-----ee-------EEE--c--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEE
Q psy4876 477 WSPNVLASGGGTADRHIYFWNVSSGA-----CL-------DSI--D--TKSQVCALLWNSDYKELVSAHGFAQNQLIIWK 540 (609)
Q Consensus 477 ~~~~llasggGs~Dg~I~iwd~~t~~-----~~-------~~~--~--~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd 540 (609)
+...-||+- ...|...|||+.... .+ ..+ + ..+....+.|..+...|+++ ....+.++|
T Consensus 156 ~~~~q~AiV--D~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~---~r~~l~~~d 230 (765)
T PF10214_consen 156 WDQRQFAIV--DEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC---NRSKLMLID 230 (765)
T ss_pred CccceEEEE--eccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE---cCCceEEEE
Confidence 887777766 478999999992111 11 111 0 11345588999888888875 478899999
Q ss_pred CCCCceEE--EEeCCCCCEEEEEEeCCCC-EEEEEECCCCEEEEEcCCC
Q psy4876 541 YPSLVKVA--ELHGHSARVLNLAMSPDET-TVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 541 ~~~~~~~~--~l~~h~~~V~~l~~spdg~-~L~s~s~Dg~I~iWdl~~~ 586 (609)
+.+..... .......+|.++.-+++.. +++.-+ ...|...++...
T Consensus 231 ~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 231 FESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred CCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence 98776533 1233457899999888722 222222 246777777764
|
These proteins are found in fungi. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=87.68 E-value=3.1 Score=40.53 Aligned_cols=73 Identities=15% Similarity=0.278 Sum_probs=48.9
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec--------CCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEE
Q psy4876 426 WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS--------RHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWN 497 (609)
Q Consensus 426 ~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~--------~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd 497 (609)
+..++.+|++.+.+|.+++||+.+++.......+..+- .....|..+.+..+|.-++.. .+|..+.||
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l----sng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL----SNGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE----eCCCEEEec
Confidence 44568899999999999999999886443321221111 345678888888777544433 367788888
Q ss_pred CCCCc
Q psy4876 498 VSSGA 502 (609)
Q Consensus 498 ~~t~~ 502 (609)
..-+.
T Consensus 94 ~~L~~ 98 (219)
T PF07569_consen 94 PDLGC 98 (219)
T ss_pred cccce
Confidence 76544
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=87.36 E-value=8.6 Score=41.16 Aligned_cols=90 Identities=13% Similarity=0.082 Sum_probs=58.4
Q ss_pred EEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEE-EE-cCCC------------
Q psy4876 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI-AW-CPWS------------ 478 (609)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l-~~-sp~~------------ 478 (609)
.+......+.+|+.+|++++.|+..+=|.|.++|+..+ ..++.+++..++-..- .. ....
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~------~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARG------IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC------hhhhhhccCccceEEEEEeecccccccccccccCCC
Confidence 34445567889999999999999888899999999988 5555555544321110 00 0100
Q ss_pred ---CcEEEEEeccCCCeEEEEECCCCceeEEEcC
Q psy4876 479 ---PNVLASGGGTADRHIYFWNVSSGACLDSIDT 509 (609)
Q Consensus 479 ---~~llasggGs~Dg~I~iwd~~t~~~~~~~~~ 509 (609)
..+|+.-. -.-|.|.||.+++|..+..+..
T Consensus 376 ~~~~l~LvIya-prRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 376 SRFALFLVIYA-PRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred CcceEEEEEEe-ccCCeEEEEecCCCCEEEEEEe
Confidence 11222221 3678999999999887776643
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=87.35 E-value=46 Score=35.79 Aligned_cols=220 Identities=11% Similarity=0.109 Sum_probs=114.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCe-----eEEEecCCCCceEEEEec------CCEEEEEecCCeEEEEEcCCCC-------
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKK-----KCRTMDGHDVRVGALAWN------TYILSSGSRCGNIVHHDVRSRD------- 408 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~-----~~~~l~~h~~~V~~l~~~------~~~L~sgs~dg~I~iwd~~~~~------- 408 (609)
...|++|+..|.++||+...+. .+-+. .-..+|..+... ....++.-.-..+.+|.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 3789999999999999986433 11111 244677777661 2223333444567777663211
Q ss_pred -eeEEEEccCC--CCeEEEEEcc----C-CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCc
Q psy4876 409 -HKVALLQNHT--QEVCGLKWSP----D-GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPN 480 (609)
Q Consensus 409 -~~~~~~~~h~--~~V~~l~~sp----d-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 480 (609)
..+..+..|. .....+++-| . ..+|++-+.||.+.+|+-+.. ...+.+.. .--...+++++..+.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~------~f~~~lp~-~llPgPl~Y~~~tDs 188 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF------AFSRFLPD-FLLPGPLCYCPRTDS 188 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE------EEEEEcCC-CCCCcCeEEeecCCE
Confidence 1222333332 2334444444 2 357888999999999997754 22222222 222245677776655
Q ss_pred EEEEEeccCCCeEEEEECCC--------------------Cc---eeEEEcCCCCeEEEE---EcCCCCeEEEEEecCCC
Q psy4876 481 VLASGGGTADRHIYFWNVSS--------------------GA---CLDSIDTKSQVCALL---WNSDYKELVSAHGFAQN 534 (609)
Q Consensus 481 llasggGs~Dg~I~iwd~~t--------------------~~---~~~~~~~~~~v~sl~---~s~~g~~l~~~sG~~dg 534 (609)
++++. .+..|..|.... ++ ...++..+..+..+. ++.....+++.+ ..
T Consensus 189 fvt~s---ss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg---er 262 (418)
T PF14727_consen 189 FVTAS---SSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG---ER 262 (418)
T ss_pred EEEec---CceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe---cc
Confidence 55543 566777776421 11 112233334443333 333334444442 56
Q ss_pred eEEEEECCCCceEEEEeCCCCCEEEEE-Ee----CCC---CEEEEEECCCCEEEEE
Q psy4876 535 QLIIWKYPSLVKVAELHGHSARVLNLA-MS----PDE---TTVLSAGADETLRLWK 582 (609)
Q Consensus 535 ~I~Iwd~~~~~~~~~l~~h~~~V~~l~-~s----pdg---~~L~s~s~Dg~I~iWd 582 (609)
.+.+.+. +|......+ ......+++ |. .++ ..++.++.++++.||.
T Consensus 263 ~Lf~l~~-~G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 263 SLFCLKD-NGSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred eEEEEcC-CCeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence 6777765 443333222 222222222 21 122 2488888899888775
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=87.29 E-value=40 Score=35.06 Aligned_cols=62 Identities=10% Similarity=0.054 Sum_probs=33.6
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeE--EEecC---CCCc--eEEEEecCCEEEEEecC-----------CeEEEE
Q psy4876 346 EGYMLGVGTSL-----GTVQLWDVSAKKKC--RTMDG---HDVR--VGALAWNTYILSSGSRC-----------GNIVHH 402 (609)
Q Consensus 346 dg~~Lasgs~d-----g~I~iwd~~~~~~~--~~l~~---h~~~--V~~l~~~~~~L~sgs~d-----------g~I~iw 402 (609)
++++++.|+.+ ..+.+||..+.+-. ..+.. ...+ -..+..++.+++.|+.+ ..|.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 45666667643 25788998775432 22210 1111 12233367777777754 247788
Q ss_pred EcCCC
Q psy4876 403 DVRSR 407 (609)
Q Consensus 403 d~~~~ 407 (609)
|..+.
T Consensus 165 d~~~~ 169 (341)
T PLN02153 165 NIADG 169 (341)
T ss_pred ECCCC
Confidence 88764
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=87.23 E-value=39 Score=34.84 Aligned_cols=114 Identities=11% Similarity=0.170 Sum_probs=54.5
Q ss_pred EEEEecCCEEEEEecCC-----eEEEEEcCCCCee--EEEEccCCCCe--EEEEEccCCCEEEEEeC-----CCcEEEEe
Q psy4876 381 GALAWNTYILSSGSRCG-----NIVHHDVRSRDHK--VALLQNHTQEV--CGLKWSPDGRYLASGGN-----DNLLNIWS 446 (609)
Q Consensus 381 ~~l~~~~~~L~sgs~dg-----~I~iwd~~~~~~~--~~~~~~h~~~V--~~l~~spdg~~lasgs~-----Dg~I~iwd 446 (609)
..+..++.+++.|+.++ .+..+|+.+.... ...+..-.... .+++. -++.+.+.|+. ...+..||
T Consensus 67 ~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd 145 (323)
T TIGR03548 67 ASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFN 145 (323)
T ss_pred EEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEc
Confidence 34455777778887643 4667777664321 11211111111 12222 25667777764 24688889
Q ss_pred CCCCCCCCCccceEeecCC-cccEEEEEEcCCCCcEEEEEeccCC--CeEEEEECCCCc
Q psy4876 447 GVPGQHTFSTQPIHSLSRH-QAAVKAIAWCPWSPNVLASGGGTAD--RHIYFWNVSSGA 502 (609)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~llasggGs~D--g~I~iwd~~t~~ 502 (609)
+.+.+- ..+..+... .....++.. +..+++.||.... ..+.+||..+.+
T Consensus 146 ~~~~~W----~~~~~~p~~~r~~~~~~~~---~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 146 LETQEW----FELPDFPGEPRVQPVCVKL---QNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCCCCe----eECCCCCCCCCCcceEEEE---CCEEEEEcCCCCccccceEEEecCCCe
Confidence 886532 122111111 111111222 3467777752111 235688887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=87.15 E-value=46 Score=35.60 Aligned_cols=145 Identities=14% Similarity=0.184 Sum_probs=81.3
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
...+..++||.+++++.....++-||--.. .-...-......+.++.|.+++. +++++ .+|.+.+ ....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~------~W~~~~~~~~~~l~~v~~~~dg~-l~l~g---~~G~l~~-S~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP------YWQPHNRASARRIQNMGWRADGG-LWLLT---RGGGLYV-SKGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCc------ceEEecCCCccceeeeeEcCCCC-EEEEe---CCceEEE-ecCC
Confidence 455667788888887765444444543211 00111122345688999998875 44444 4566543 3344
Q ss_pred Cc-----eeEEEcCC---CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe---CCCCCEEEEEEeCCCCEE
Q psy4876 501 GA-----CLDSIDTK---SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH---GHSARVLNLAMSPDETTV 569 (609)
Q Consensus 501 ~~-----~~~~~~~~---~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~L 569 (609)
+. ........ ..+.++.|.+++..+++ | ..|.+.... ..++.-.... .-......+.|.++++.+
T Consensus 310 G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~--G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~ 385 (398)
T PLN00033 310 GLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA--G-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGF 385 (398)
T ss_pred CCcccccceeecccCCCCcceEEEEEcCCCcEEEE--E-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceE
Confidence 43 22333222 35889999988887776 4 567666553 3333222222 224567899987776655
Q ss_pred EEEECCCCEEEE
Q psy4876 570 LSAGADETLRLW 581 (609)
Q Consensus 570 ~s~s~Dg~I~iW 581 (609)
++ +.+|.|.-|
T Consensus 386 ~~-G~~G~il~~ 396 (398)
T PLN00033 386 VL-GNDGVLLRY 396 (398)
T ss_pred EE-eCCcEEEEe
Confidence 54 467776544
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=86.72 E-value=3.1 Score=28.99 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=25.7
Q ss_pred ccEEEEEEcCCCC--cEEEEEeccCCCeEEEEECCC
Q psy4876 467 AAVKAIAWCPWSP--NVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 467 ~~V~~l~~sp~~~--~llasggGs~Dg~I~iwd~~t 500 (609)
++|.++.|+|... .||+... .-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E--~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAE--HQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEc--cCCeEEEEEccc
Confidence 4689999997654 6777763 679999999995
|
It contains a characteristic DLL sequence motif. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=86.25 E-value=23 Score=31.36 Aligned_cols=108 Identities=16% Similarity=0.211 Sum_probs=64.2
Q ss_pred EecC--CEEEEEecCCeEEEEEcCCCC-------eeEEEEccCCCCeEEEEEcc-----CCCEEEEEeCCCcEEEEeCCC
Q psy4876 384 AWNT--YILSSGSRCGNIVHHDVRSRD-------HKVALLQNHTQEVCGLKWSP-----DGRYLASGGNDNLLNIWSGVP 449 (609)
Q Consensus 384 ~~~~--~~L~sgs~dg~I~iwd~~~~~-------~~~~~~~~h~~~V~~l~~sp-----dg~~lasgs~Dg~I~iwd~~~ 449 (609)
.|+| ..|++++.-|.|.|++..... ..+..+. -...|++|+-.+ +...|+.|+. ..|..||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence 4543 467788888999999876432 1233333 456777776544 3456777775 6799999987
Q ss_pred CCCCCCccceEeecCCcccEEEEEEcC---CCCcEEEEEeccCCCeEEEEECCCCce
Q psy4876 450 GQHTFSTQPIHSLSRHQAAVKAIAWCP---WSPNVLASGGGTADRHIYFWNVSSGAC 503 (609)
Q Consensus 450 ~~~~~~~~~~~~~~~h~~~V~~l~~sp---~~~~llasggGs~Dg~I~iwd~~t~~~ 503 (609)
... +.. +.-...|.++.+-. ....++++|| +..|.-||..-.+.
T Consensus 83 N~d------~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGG---ncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 83 NSD------LFY-KEVPDGVNAIVIGKLGDIPSPLVIVGG---NCSIQGFDYEGNEI 129 (136)
T ss_pred Cch------hhh-hhCccceeEEEEEecCCCCCcEEEECc---eEEEEEeCCCCcEE
Confidence 632 211 12235566666632 2235677764 66676666554433
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=86.19 E-value=24 Score=31.34 Aligned_cols=118 Identities=15% Similarity=0.084 Sum_probs=71.5
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCC--CccceEeecCCcccEEEEEEcC----CCCcEEEEEeccCCCeEEEEE
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTF--STQPIHSLSRHQAAVKAIAWCP----WSPNVLASGGGTADRHIYFWN 497 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~--~~~~~~~~~~h~~~V~~l~~sp----~~~~llasggGs~Dg~I~iwd 497 (609)
-.|.....-|+.++.-|.|.|++........ ....+..+. -...|++|+-.+ ++..+|+.| ....|..||
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliG---t~t~llaYD 79 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIG---TQTSLLAYD 79 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEe---ccceEEEEE
Confidence 3555555578888888999999876542111 112333333 345677776554 345677777 588999999
Q ss_pred CCCCceeEEEcCCCCeEEEEEcCC---CCeEEEEEecCCCeEEEEECCCCceE
Q psy4876 498 VSSGACLDSIDTKSQVCALLWNSD---YKELVSAHGFAQNQLIIWKYPSLVKV 547 (609)
Q Consensus 498 ~~t~~~~~~~~~~~~v~sl~~s~~---g~~l~~~sG~~dg~I~Iwd~~~~~~~ 547 (609)
+.....+...+....+.++.+-.- ...++.+ | .+-.|.-||..-.+..
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~iv-G-Gncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIV-G-GNCSIQGFDYEGNEIF 130 (136)
T ss_pred cccCchhhhhhCccceeEEEEEecCCCCCcEEEE-C-ceEEEEEeCCCCcEEE
Confidence 998877666666677777776432 2233333 2 2455666665444433
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=86.01 E-value=3.2 Score=28.12 Aligned_cols=41 Identities=5% Similarity=0.116 Sum_probs=31.5
Q ss_pred CCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEE
Q psy4876 476 PWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLW 518 (609)
Q Consensus 476 p~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~ 518 (609)
|+++.++++.. .++.|.++|..+++.+..+........++|
T Consensus 1 pd~~~lyv~~~--~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNS--GSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeC--CCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 56777777763 689999999999998888877655555555
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=85.55 E-value=32 Score=37.67 Aligned_cols=101 Identities=9% Similarity=0.037 Sum_probs=53.6
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeEE--Eec---CCCCceEEEEecCCEEEEEecCC-----eEEEEEcCCCCee
Q psy4876 346 EGYMLGVGTSL-----GTVQLWDVSAKKKCR--TMD---GHDVRVGALAWNTYILSSGSRCG-----NIVHHDVRSRDHK 410 (609)
Q Consensus 346 dg~~Lasgs~d-----g~I~iwd~~~~~~~~--~l~---~h~~~V~~l~~~~~~L~sgs~dg-----~I~iwd~~~~~~~ 410 (609)
++.+.+.|+.+ ..+.+||+.+.+-.. .+. ........+..++.+++.|+.++ .+..||+.+..
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-- 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKK-- 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCE--
Confidence 45566666654 358889988754322 111 01111223344677777777643 46678877642
Q ss_pred EEEEcc------CCCCeEEEEEccCCCEEEEEeCC----CcEEEEeCCCC
Q psy4876 411 VALLQN------HTQEVCGLKWSPDGRYLASGGND----NLLNIWSGVPG 450 (609)
Q Consensus 411 ~~~~~~------h~~~V~~l~~spdg~~lasgs~D----g~I~iwd~~~~ 450 (609)
-..+.. ..... .++. -++++++.++.+ ..|.+||+.+.
T Consensus 306 W~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 306 WFHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred EEeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEEEECCCC
Confidence 111111 11111 1222 256777777755 46899998875
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=85.54 E-value=3.3 Score=28.84 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=26.3
Q ss_pred CCeEEEEEccC-C--CEEEEEeCCCeEEEEeCCC
Q psy4876 336 ENVCSVAWIQE-G--YMLGVGTSLGTVQLWDVSA 366 (609)
Q Consensus 336 ~~V~~v~~spd-g--~~Lasgs~dg~I~iwd~~~ 366 (609)
+.|.++.|+|+ + ++|+.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46889999985 3 6888888889999999985
|
It contains a characteristic DLL sequence motif. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.19 E-value=8.3 Score=40.84 Aligned_cols=159 Identities=15% Similarity=0.085 Sum_probs=95.5
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeE-EEecCC-CC----ceE-EEE--ecCCEEEEEecCCeEEEE-E
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKC-RTMDGH-DV----RVG-ALA--WNTYILSSGSRCGNIVHH-D 403 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~-~~l~~h-~~----~V~-~l~--~~~~~L~sgs~dg~I~iw-d 403 (609)
.-..|..+-..|||+.|++-+. .++.|+++.+.... +.+-.. .+ .|+ .+. -.+.-|..++.||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 4466778889999999888766 67899988764321 111111 11 122 111 135678888999998877 6
Q ss_pred cCCCCee----EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCC
Q psy4876 404 VRSRDHK----VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSP 479 (609)
Q Consensus 404 ~~~~~~~----~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 479 (609)
++..... ++.++-...++.-+.-..+.+-+++-+..|++.++..... +++ -+..-...+.-++++|++.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~------~~l-L~~~~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSE------KLL-LFERAYQAPQLVAMSPNQA 370 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccC------cce-ehhhhhcCcceeeeCcccc
Confidence 6554321 2222222344443333334456777788888887765443 222 2222223567789999998
Q ss_pred cEEEEEeccCCCeEEEEECCCCcee
Q psy4876 480 NVLASGGGTADRHIYFWNVSSGACL 504 (609)
Q Consensus 480 ~llasggGs~Dg~I~iwd~~t~~~~ 504 (609)
.++.- ..|.|+++.+++..+.
T Consensus 371 ~Ll~e----~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 371 YLLSE----DQGKIRLAQLENRNPE 391 (733)
T ss_pred hheee----cCCceEEEEecCCCCC
Confidence 77763 5789999998865543
|
|
| >KOG4460|consensus | Back alignment and domain information |
|---|
Probab=85.11 E-value=23 Score=38.36 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=25.2
Q ss_pred CEEEEEEeCCC---CEEEEEECCCCEEEEEcCCCccc
Q psy4876 556 RVLNLAMSPDE---TTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 556 ~V~~l~~spdg---~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
.+..++|+|+. ..|..-+.|++||+|++......
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 46677888864 57777788888888888766544
|
|
| >KOG1900|consensus | Back alignment and domain information |
|---|
Probab=84.80 E-value=8.8 Score=45.85 Aligned_cols=140 Identities=13% Similarity=0.172 Sum_probs=86.6
Q ss_pred eCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEE--------EcCCCCcEEEEEeccCCCeEEEEECC----CCcee
Q psy4876 437 GNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA--------WCPWSPNVLASGGGTADRHIYFWNVS----SGACL 504 (609)
Q Consensus 437 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~--------~sp~~~~llasggGs~Dg~I~iwd~~----t~~~~ 504 (609)
+.|+.+.+|+.+++ .....+.+-...|..|. |-|.=+++|+.+ .--.|.++-+. ++..-
T Consensus 96 TiDn~L~lWny~~~------~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva---T~~ei~ilgV~~~~~~~~~~ 166 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESD------NELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA---TPVEIVILGVSFDEFTGELS 166 (1311)
T ss_pred EeCCeEEEEEcCCC------CccccccchhhhheeeeeecCCCCcchhhhheeEEec---ccceEEEEEEEeccccCccc
Confidence 45789999999986 33444444444454443 334445666665 34555555332 22111
Q ss_pred -----EEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC--C------ce--------------EEEEe-CCCC
Q psy4876 505 -----DSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS--L------VK--------------VAELH-GHSA 555 (609)
Q Consensus 505 -----~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~--~------~~--------------~~~l~-~h~~ 555 (609)
.++.. +..|.++....+|+.+++ | .||.|+=+-+.. + .+ +..+. .+.+
T Consensus 167 ~f~~~~~i~~dg~~V~~I~~t~nGRIF~~--G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~d 243 (1311)
T KOG1900|consen 167 IFNTSFKISVDGVSVNCITYTENGRIFFA--G-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKD 243 (1311)
T ss_pred ccccceeeecCCceEEEEEeccCCcEEEe--e-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCC
Confidence 12222 347889998888988887 4 566444322221 1 00 11223 4677
Q ss_pred CEEEEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 556 RVLNLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 556 ~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
+|..++.......+.+-+..|+|.+|++.....
T Consensus 244 pI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~ 276 (1311)
T KOG1900|consen 244 PIRQITIDNSRNILYVLSEKGTVSAYDIGGNGL 276 (1311)
T ss_pred cceeeEeccccceeeeeccCceEEEEEccCCCc
Confidence 999999988888999999999999999988443
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=84.63 E-value=51 Score=33.79 Aligned_cols=233 Identities=13% Similarity=-0.002 Sum_probs=117.1
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEe-CCCeEE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGT-SLGTVQ 360 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs-~dg~I~ 360 (609)
.+..|.+..|++.+... .. .....+-+...|+++...+.-+.|++-+ ....++
T Consensus 15 ~lL~GTe~Gly~~~~~~-------------------------~~-~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~ 68 (302)
T smart00036 15 WLLVGTEEGLYVLNISD-------------------------QP-GTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLY 68 (302)
T ss_pred EEEEEeCCceEEEEccc-------------------------CC-CCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEE
Confidence 66777777777777654 11 1222222567899999998877666544 334599
Q ss_pred EEeCCCCee---------------EEEecCCCCceEEEEe-cC--CEEEEEecCCeEEEEEcCCCCeeEEEEc-------
Q psy4876 361 LWDVSAKKK---------------CRTMDGHDVRVGALAW-NT--YILSSGSRCGNIVHHDVRSRDHKVALLQ------- 415 (609)
Q Consensus 361 iwd~~~~~~---------------~~~l~~h~~~V~~l~~-~~--~~L~sgs~dg~I~iwd~~~~~~~~~~~~------- 415 (609)
++++..-.. ....-+|......+.. .+ ..++++....+|.++......+....+.
T Consensus 69 ~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~ 148 (302)
T smart00036 69 SHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPL 148 (302)
T ss_pred EEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccC
Confidence 999842211 0112233333333333 22 2344445556677664433211111111
Q ss_pred cCCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCC--CCCCCCccceEeecCCc-ccEEEEEEcCCCCcEEEEEeccCC
Q psy4876 416 NHTQEVCGLKWSPD--GRYLASGGNDNLLNIWSGVP--GQHTFSTQPIHSLSRHQ-AAVKAIAWCPWSPNVLASGGGTAD 490 (609)
Q Consensus 416 ~h~~~V~~l~~spd--g~~lasgs~Dg~I~iwd~~~--~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~llasggGs~D 490 (609)
.-..++..+..+++ ...+..|+..+...++++.. ... .....-....... .++....... + .++++ .|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~-~d~sl~~~~~~~~~~p~~i~~l~~-~-e~Llc----~~ 221 (302)
T smart00036 149 ISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSK-EDLSLPFLSEETSLKPISVVQVPR-D-EFLLC----YD 221 (302)
T ss_pred CCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccc-ccccccccccccccCceEEEEECC-C-eEEEE----EC
Confidence 01123333333333 45677777643345555543 110 0000000011111 3444444433 4 34443 46
Q ss_pred CeEEEEECCCCce--eEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC
Q psy4876 491 RHIYFWNVSSGAC--LDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 491 g~I~iwd~~t~~~--~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~ 552 (609)
....+-|...... ...+.-...+.++++.. .++++. .++.|.|+++.+++.+.++..
T Consensus 222 ~~~v~Vn~~G~~~~r~~~l~w~~~p~~~~~~~--pyll~~---~~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 222 EFGVFVNLYGKRRSRNPILHWEFMPESFAYHS--PYLLAF---HDNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred cEEEEEeCCCCccccceEEEcCCcccEEEEEC--CEEEEE---cCCcEEEEECCCCceEEEEec
Confidence 7777777653122 22344455667777763 566654 477899999999998888763
|
Unpublished observations. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=83.73 E-value=63 Score=34.18 Aligned_cols=186 Identities=14% Similarity=0.175 Sum_probs=104.7
Q ss_pred CEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEcc----CCCE--EEEEeC-C---CcEEEEeCCCCCCCCCcc
Q psy4876 388 YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSP----DGRY--LASGGN-D---NLLNIWSGVPGQHTFSTQ 457 (609)
Q Consensus 388 ~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp----dg~~--lasgs~-D---g~I~iwd~~~~~~~~~~~ 457 (609)
.+++....++-+.+||+... .++.+. .+.++.+..-. .|+. ||++++ + ..|++|.+.... .
T Consensus 69 SlIigTdK~~GL~VYdL~Gk--~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~-----g 139 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDGK--ELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT-----G 139 (381)
T ss_dssp -EEEEEETTTEEEEEETTS---EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT-----T
T ss_pred ceEEEEeCCCCEEEEcCCCc--EEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC-----C
Confidence 56777778888999999864 455543 23444444321 3433 444443 2 468999776321 1
Q ss_pred ceEeecC-------CcccEEEEEE--cCC-CCcEEEEEeccCCCeEEEEECC---CC----ceeEEEcCCCCeEEEEEcC
Q psy4876 458 PIHSLSR-------HQAAVKAIAW--CPW-SPNVLASGGGTADRHIYFWNVS---SG----ACLDSIDTKSQVCALLWNS 520 (609)
Q Consensus 458 ~~~~~~~-------h~~~V~~l~~--sp~-~~~llasggGs~Dg~I~iwd~~---t~----~~~~~~~~~~~v~sl~~s~ 520 (609)
.+..+.. ....+..+|+ ++. |...++.. ..+|.+..|-+. .+ +.++.+...+++..|....
T Consensus 140 ~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~--~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDD 217 (381)
T PF02333_consen 140 ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVN--GKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDD 217 (381)
T ss_dssp EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEE--ETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEET
T ss_pred cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEe--cCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEec
Confidence 2222211 1234666776 343 43333333 378988887764 33 3678888889999999999
Q ss_pred CCCeEEEEEecCCCeEEEEECC-----CCceEEEEeC--CCCCEEEEEEe--CCCC-EE-EEEECCCCEEEEEcCCC
Q psy4876 521 DYKELVSAHGFAQNQLIIWKYP-----SLVKVAELHG--HSARVLNLAMS--PDET-TV-LSAGADETLRLWKIFEK 586 (609)
Q Consensus 521 ~g~~l~~~sG~~dg~I~Iwd~~-----~~~~~~~l~~--h~~~V~~l~~s--pdg~-~L-~s~s~Dg~I~iWdl~~~ 586 (609)
....|+. |.++.-|.-|+.. .+..+....+ ....|..|++- .+++ || +|.-.+++..||+....
T Consensus 218 e~g~LYv--gEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 218 ETGRLYV--GEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TTTEEEE--EETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred ccCCEEE--ecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999 5577666666664 1223333322 34567888774 3443 44 44445789999998764
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=83.61 E-value=64 Score=34.13 Aligned_cols=51 Identities=14% Similarity=0.031 Sum_probs=26.9
Q ss_pred CCCEEEEEeCC-----------CeEEEEeCCCCeeEEEec--CCC-CceEEEE-ecCCEEEEEecC
Q psy4876 346 EGYMLGVGTSL-----------GTVQLWDVSAKKKCRTMD--GHD-VRVGALA-WNTYILSSGSRC 396 (609)
Q Consensus 346 dg~~Lasgs~d-----------g~I~iwd~~~~~~~~~l~--~h~-~~V~~l~-~~~~~L~sgs~d 396 (609)
++.+.+.|+.+ ..+..||..+.+-...-. ... .....+. .++++.+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 45666666643 247788887654322211 111 1122333 477888888754
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=83.17 E-value=65 Score=33.91 Aligned_cols=159 Identities=13% Similarity=0.153 Sum_probs=81.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCC-c-eEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccC---CCC
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDV-R-VGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNH---TQE 420 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~-~-V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h---~~~ 420 (609)
+|+ |++++.+|.+..+|..+|+.+........ . ..........+..++.+|.+...|..++. ........ ...
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~-~~W~~~~~~~~~~~ 188 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGT-LKWTYETPAPLSLS 188 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCc-EEEEEecCCccccc
Confidence 666 66788899999999988988887776551 1 11111133445555577888888888764 33332211 111
Q ss_pred eEEEEEccCCCEEEEEeC--CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEE---eccCCCeEEE
Q psy4876 421 VCGLKWSPDGRYLASGGN--DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASG---GGTADRHIYF 495 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg---gGs~Dg~I~i 495 (609)
+..-....++ .+..+.. ++.+.-.|..++...+........ +.. .+....... ...+.+.+ .++.++.+..
T Consensus 189 ~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~-~~~-~~~~~~~~~-~~~v~v~~~~~~~~~~g~~~~ 264 (370)
T COG1520 189 IYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQKVSQTI-GRT-AISTTPAVD-GGPVYVDGGVYAGSYGGKLLC 264 (370)
T ss_pred cccCceeecc-eEEEecCCCcceEEEEEccCCcEeeeeeeeccc-Ccc-ccccccccc-CceEEECCcEEEEecCCeEEE
Confidence 1111112233 3444444 556777777777432221111111 111 010000000 11111110 0236788999
Q ss_pred EECCCCceeEEEcCC
Q psy4876 496 WNVSSGACLDSIDTK 510 (609)
Q Consensus 496 wd~~t~~~~~~~~~~ 510 (609)
.|..+|+.+-.+...
T Consensus 265 l~~~~G~~~W~~~~~ 279 (370)
T COG1520 265 LDADTGELIWSFPAG 279 (370)
T ss_pred EEcCCCceEEEEecc
Confidence 999999988887764
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=83.15 E-value=57 Score=33.23 Aligned_cols=223 Identities=17% Similarity=0.142 Sum_probs=117.2
Q ss_pred CccCCceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec------CC
Q psy4876 264 PEIQNDYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE------GN 335 (609)
Q Consensus 264 p~~~~~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------h~ 335 (609)
|.+.+-|- |+++|.+ +++....+...+||........ -....+..+. ..
T Consensus 20 p~L~N~WG---ia~~p~~~~WVadngT~~~TlYdg~~~~~~g--------------------~~~~L~vtiP~~~~~~~~ 76 (336)
T TIGR03118 20 PGLRNAWG---LSYRPGGPFWVANTGTGTATLYVGNPDTQPL--------------------VQDPLVVVIPAPPPLAAE 76 (336)
T ss_pred ccccccce---eEecCCCCEEEecCCcceEEeecCCcccccC--------------------CccceEEEecCCCCCCCC
Confidence 44555554 8899987 5566666789999987210000 0111122222 23
Q ss_pred CCeEEEEEccCCC------------EEEEEeCCCeEEEEeCCCCee-----EEEec-CCCCce-EEEEe--c--CCEEEE
Q psy4876 336 ENVCSVAWIQEGY------------MLGVGTSLGTVQLWDVSAKKK-----CRTMD-GHDVRV-GALAW--N--TYILSS 392 (609)
Q Consensus 336 ~~V~~v~~spdg~------------~Lasgs~dg~I~iwd~~~~~~-----~~~l~-~h~~~V-~~l~~--~--~~~L~s 392 (609)
...+.+.|+.... .++.+++||+|.-|...-+.. ...+. .....| ..+++ + +.+|+.
T Consensus 77 ~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYa 156 (336)
T TIGR03118 77 GTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYA 156 (336)
T ss_pred CCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEE
Confidence 4677777764332 256688999999998533221 12222 112223 23444 2 344444
Q ss_pred E-ecCCeEEEEEcCCCCeeEEEEccCCCC-------------------eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q psy4876 393 G-SRCGNIVHHDVRSRDHKVALLQNHTQE-------------------VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQH 452 (609)
Q Consensus 393 g-s~dg~I~iwd~~~~~~~~~~~~~h~~~-------------------V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~ 452 (609)
+ -..++|-|+|-.-. .+..-....++ |+-..-.+++..=+.|..-|.|-+||+..
T Consensus 157 adF~~g~IDVFd~~f~--~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G--- 231 (336)
T TIGR03118 157 ANFRQGRIDVFKGSFR--PPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG--- 231 (336)
T ss_pred eccCCCceEEecCccc--cccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC---
Confidence 4 46788888876532 11110000110 11111112222222233347899999874
Q ss_pred CCCccceEeec--CCcccEEEEEEcCC-----CCcEEEEEeccCCCeEEEEECCCCceeEEEcCC-------CCeEEEEE
Q psy4876 453 TFSTQPIHSLS--RHQAAVKAIAWCPW-----SPNVLASGGGTADRHIYFWNVSSGACLDSIDTK-------SQVCALLW 518 (609)
Q Consensus 453 ~~~~~~~~~~~--~h~~~V~~l~~sp~-----~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-------~~v~sl~~ 518 (609)
..++++. +.-..-+.|+..|. ...||+-- --||+|..||..+|+.+..+... ..++.|.|
T Consensus 232 ----~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGN--FGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~f 305 (336)
T TIGR03118 232 ----QLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGN--FGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTF 305 (336)
T ss_pred ----cEEEEeccCCcccCCceeeeChhhhCCCCCCeEEee--cCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeee
Confidence 4566553 22234456666552 23455543 34999999999999988777543 24677777
Q ss_pred cC
Q psy4876 519 NS 520 (609)
Q Consensus 519 s~ 520 (609)
..
T Consensus 306 Gn 307 (336)
T TIGR03118 306 GN 307 (336)
T ss_pred CC
Confidence 65
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=82.72 E-value=80 Score=34.61 Aligned_cols=102 Identities=10% Similarity=-0.016 Sum_probs=55.3
Q ss_pred CCCEEEEEeCCC-----eEEEEeCCCCeeEEEec-----CCCCceEEEEecCCEEEEEecC----CeEEEEEcCCCCeeE
Q psy4876 346 EGYMLGVGTSLG-----TVQLWDVSAKKKCRTMD-----GHDVRVGALAWNTYILSSGSRC----GNIVHHDVRSRDHKV 411 (609)
Q Consensus 346 dg~~Lasgs~dg-----~I~iwd~~~~~~~~~l~-----~h~~~V~~l~~~~~~L~sgs~d----g~I~iwd~~~~~~~~ 411 (609)
++++++.|+.++ .+..||+.+.+-...-. ........+.+++.+++.++.+ ..+.+||+.+..-
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W-- 355 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKW-- 355 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEE--
Confidence 456666666543 46788887654322110 1112223344577888887765 3588999887531
Q ss_pred EEEccC-----CCCeEEEEEccCCCEEEEEeCC--------------CcEEEEeCCCC
Q psy4876 412 ALLQNH-----TQEVCGLKWSPDGRYLASGGND--------------NLLNIWSGVPG 450 (609)
Q Consensus 412 ~~~~~h-----~~~V~~l~~spdg~~lasgs~D--------------g~I~iwd~~~~ 450 (609)
..+... .....+++ .-++++++.|+.+ +.+.+||+.+.
T Consensus 356 ~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 356 TQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred EEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceeccEEEEEcCcC
Confidence 222111 11112222 2256777777753 25788888765
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=82.65 E-value=14 Score=30.39 Aligned_cols=43 Identities=9% Similarity=0.003 Sum_probs=32.5
Q ss_pred cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEe
Q psy4876 488 TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHG 530 (609)
Q Consensus 488 s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG 530 (609)
..+|.+..||..+++....++.-.-...++.++++..++++-.
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence 4578999999999887666666667899999999999988743
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=82.32 E-value=66 Score=33.40 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=14.8
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCC
Q psy4876 429 DGRYLASGGND-----NLLNIWSGVPG 450 (609)
Q Consensus 429 dg~~lasgs~D-----g~I~iwd~~~~ 450 (609)
++.+++.|+.+ ..+.+||+.+.
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCC
Confidence 46677777753 35788888764
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=82.04 E-value=72 Score=33.59 Aligned_cols=194 Identities=13% Similarity=0.008 Sum_probs=98.4
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCC--CceEEEE-ecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCC-CCeEEE
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHD--VRVGALA-WNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHT-QEVCGL 424 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~--~~V~~l~-~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~-~~V~~l 424 (609)
.++++..+|.|.-.|.+++..+.....-. ..+..-. .....++.++.+|.++.+|.++++ .+....... -.+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~-~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGT-LVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCc-EEEEEecCCCeEEecC
Confidence 44556788888888888877554322111 1111111 123447788889988888987764 555555444 112222
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCc---ccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 425 KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQ---AAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 425 ~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
..-.++ .+..++.++.+...|..++. .+....... ..+..-.... ...+++...+. ++.+.-.|..+|
T Consensus 149 ~v~~~~-~v~~~s~~g~~~al~~~tG~------~~W~~~~~~~~~~~~~~~~~~~-~~~vy~~~~~~-~~~~~a~~~~~G 219 (370)
T COG1520 149 PVVGDG-TVYVGTDDGHLYALNADTGT------LKWTYETPAPLSLSIYGSPAIA-SGTVYVGSDGY-DGILYALNAEDG 219 (370)
T ss_pred cEEcCc-EEEEecCCCeEEEEEccCCc------EEEEEecCCccccccccCceee-cceEEEecCCC-cceEEEEEccCC
Confidence 222244 34444467888888888773 332221111 0010000011 22233322101 557888888888
Q ss_pred ceeEEEcCCCCeEE-----EEEcCCCCeEEE----EEecCCCeEEEEECCCCceEEEEeCC
Q psy4876 502 ACLDSIDTKSQVCA-----LLWNSDYKELVS----AHGFAQNQLIIWKYPSLVKVAELHGH 553 (609)
Q Consensus 502 ~~~~~~~~~~~v~s-----l~~s~~g~~l~~----~sG~~dg~I~Iwd~~~~~~~~~l~~h 553 (609)
...........+.. ..... +..+.+ ..+..++.+...+..+++.+..+...
T Consensus 220 ~~~w~~~~~~~~~~~~~~~~~~~~-~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 220 TLKWSQKVSQTIGRTAISTTPAVD-GGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cEeeeeeeecccCccccccccccc-CceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 87766432211110 11111 111111 11345777888888888888777653
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=81.85 E-value=78 Score=33.88 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=66.1
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC--CcccEEEEEEcCCCCcEEEEEeccCCCeEE
Q psy4876 417 HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR--HQAAVKAIAWCPWSPNVLASGGGTADRHIY 494 (609)
Q Consensus 417 h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~llasggGs~Dg~I~ 494 (609)
....+.++.|.+++.+++++ .+|.+. |....+.... ......... ....+.++.|.+++ .++++| ..|.+.
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~-~~~f~~~~~~~~~~~l~~v~~~~d~-~~~a~G---~~G~v~ 351 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEE-DFDFEEADIKSRGFGILDVGYRSKK-EAWAAG---GSGILL 351 (398)
T ss_pred CccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccc-ccceeecccCCCCcceEEEEEcCCC-cEEEEE---CCCcEE
Confidence 34568899999999877765 556654 3333331100 001222211 12358889998876 577776 477666
Q ss_pred EEECCCCceeEEEc----CCCCeEEEEEcCCCCeEEEEEecCCCeEEEE
Q psy4876 495 FWNVSSGACLDSID----TKSQVCALLWNSDYKELVSAHGFAQNQLIIW 539 (609)
Q Consensus 495 iwd~~t~~~~~~~~----~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iw 539 (609)
... ..|+.-.... ....+..+.|.++++.+++ | .+|.|.-|
T Consensus 352 ~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~--G-~~G~il~~ 396 (398)
T PLN00033 352 RST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL--G-NDGVLLRY 396 (398)
T ss_pred EeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE--e-CCcEEEEe
Confidence 553 4444433322 2346889999888888777 4 57776554
|
|
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=81.49 E-value=1.2e+02 Score=35.63 Aligned_cols=73 Identities=14% Similarity=0.054 Sum_probs=45.0
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCc----cceE---eec------CCcccEEEEEEcCCCCcEEEEE
Q psy4876 419 QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFST----QPIH---SLS------RHQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 419 ~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~----~~~~---~~~------~h~~~V~~l~~sp~~~~llasg 485 (609)
..|.++....-+.+++..-.||+|.++|-.+.+..... .... .+. .+...+..++|+|.+..++...
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 45777777777889999999999999998876332211 1111 110 0111344578999886555553
Q ss_pred eccCCCeEE
Q psy4876 486 GGTADRHIY 494 (609)
Q Consensus 486 gGs~Dg~I~ 494 (609)
.++.+.
T Consensus 340 ---~~~~~~ 345 (753)
T PF11635_consen 340 ---EDGKTK 345 (753)
T ss_pred ---cCCCce
Confidence 566644
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=81.29 E-value=78 Score=33.51 Aligned_cols=190 Identities=15% Similarity=0.199 Sum_probs=107.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEE------ecCC---EEEEEecC---CeEEEEEcCCCCeeEEE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALA------WNTY---ILSSGSRC---GNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~------~~~~---~L~sgs~d---g~I~iwd~~~~~~~~~~ 413 (609)
...+|+....++-+.+||++ |+.+..+.. +++..+. +++. ++++..++ ..|.+|.+......+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 34677777778889999997 466666642 3344333 3443 34444443 46999988643223333
Q ss_pred Ecc-------CCCCeEEEEEc--c-CCC-EEEEEeCCCcEEEEeCCC-CCCCCCccceEeecCCcccEEEEEEcCCCCcE
Q psy4876 414 LQN-------HTQEVCGLKWS--P-DGR-YLASGGNDNLLNIWSGVP-GQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 414 ~~~-------h~~~V~~l~~s--p-dg~-~lasgs~Dg~I~iwd~~~-~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 481 (609)
+.. ....+.++|+- + +|. ++++...+|.+..|.+.. +......+.++.|.. ...+..+........|
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRL 222 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCE
Confidence 321 22457788874 3 455 566677889888887753 222223356777764 3468888888776555
Q ss_pred EEEEeccCCCeEEEEECCC--C---ceeEEEcCC---CCeEEEEEc--CCCC-eEEEEEecCCCeEEEEECCC
Q psy4876 482 LASGGGTADRHIYFWNVSS--G---ACLDSIDTK---SQVCALLWN--SDYK-ELVSAHGFAQNQLIIWKYPS 543 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t--~---~~~~~~~~~---~~v~sl~~s--~~g~-~l~~~sG~~dg~I~Iwd~~~ 543 (609)
++. -++.-|.-|+.+- + ..+...... ..+..|+.- .+++ ||+++ .-.+++..||+...
T Consensus 223 Yvg---EE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivS-sQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 223 YVG---EEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVS-SQGDNSFAVYDREG 291 (381)
T ss_dssp EEE---ETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEE-EGGGTEEEEEESST
T ss_pred EEe---cCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEE-cCCCCeEEEEecCC
Confidence 553 3777788888762 2 223222222 367777664 3444 45544 44688999999764
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.16 E-value=37 Score=32.53 Aligned_cols=131 Identities=12% Similarity=0.089 Sum_probs=72.2
Q ss_pred EeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCe---eEEEEccC-CCCeEEEEEcc
Q psy4876 353 GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDH---KVALLQNH-TQEVCGLKWSP 428 (609)
Q Consensus 353 gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~---~~~~~~~h-~~~V~~l~~sp 428 (609)
.-.+|.-.++|..+-+++..+. ..+.=+.++.++..|+.++...+++.-|..+-.. ...++.+. -..++.+.|-
T Consensus 107 Tw~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V- 184 (262)
T COG3823 107 TWKEGVAFKYDADTLEELGRFS-YEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV- 184 (262)
T ss_pred EeccceeEEEChHHhhhhcccc-cCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-
Confidence 4467888899998888777765 4455577777777777777667777777654321 11112111 1122333332
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCC------ccceEeecCCcccEEEEEEcCCCCcEEEEE
Q psy4876 429 DGRYLASGGNDNLLNIWSGVPGQHTFS------TQPIHSLSRHQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 429 dg~~lasgs~Dg~I~iwd~~~~~~~~~------~~~~~~~~~h~~~V~~l~~sp~~~~llasg 485 (609)
||...|-.=.+..|...|.++|+...- ...+..-..|..-...+++.|++..++++|
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 444444443344444444444421000 011111123445568899999998888886
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=80.59 E-value=27 Score=39.12 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=23.6
Q ss_pred CeEEEEEcc----CCCEEEEEeCCCcEEEEeCCCC
Q psy4876 420 EVCGLKWSP----DGRYLASGGNDNLLNIWSGVPG 450 (609)
Q Consensus 420 ~V~~l~~sp----dg~~lasgs~Dg~I~iwd~~~~ 450 (609)
.+..++++. +..++++.+.|+.+++||+.++
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~ 250 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETG 250 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTT
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCC
Confidence 345566655 6778999999999999999988
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=80.53 E-value=18 Score=38.99 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=48.7
Q ss_pred cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy4876 386 NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVP 449 (609)
Q Consensus 386 ~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~ 449 (609)
...+++++++.|.|++||--.. .....+.+....|..|..+.+|+++++.+. ..+.+-|+.-
T Consensus 572 esGyIa~as~kGDirLyDRig~-rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGK-RAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred cCceEEEecCCCceeeehhhcc-hhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 3578999999999999986543 234556778889999999999998877665 6788888753
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=80.50 E-value=76 Score=32.88 Aligned_cols=164 Identities=16% Similarity=0.164 Sum_probs=91.9
Q ss_pred CCeEEEEEccCCCEEEEEeCCCc------EEEEeCCCCCC-CC--CccceEeecCCc--------ccEEEEEEcCCCCcE
Q psy4876 419 QEVCGLKWSPDGRYLASGGNDNL------LNIWSGVPGQH-TF--STQPIHSLSRHQ--------AAVKAIAWCPWSPNV 481 (609)
Q Consensus 419 ~~V~~l~~spdg~~lasgs~Dg~------I~iwd~~~~~~-~~--~~~~~~~~~~h~--------~~V~~l~~sp~~~~l 481 (609)
+.+.+|.+.+++..+++.+.+|. ++.+++..... .. .......+.... ....+|++.+++ .+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence 56788899865556666677777 66666554110 00 001111111111 134578886665 45
Q ss_pred EEEEeccCC------CeEEEEECCCCceeEEEc----------------CCCCeEEEEEcCCCCeEEEEEecC---CC--
Q psy4876 482 LASGGGTAD------RHIYFWNVSSGACLDSID----------------TKSQVCALLWNSDYKELVSAHGFA---QN-- 534 (609)
Q Consensus 482 lasggGs~D------g~I~iwd~~t~~~~~~~~----------------~~~~v~sl~~s~~g~~l~~~sG~~---dg-- 534 (609)
+++.- .+ ..|+.++.. |..+..+. .+....+++++++|+.|+++.... |+
T Consensus 99 ~is~E--~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 99 WISSE--GGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred EEEeC--CccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 55542 34 678888866 66544441 223678999999999776654221 22
Q ss_pred -------eEEEEEC--CC-CceEEEE----eC-----CCCCEEEEEEeCCCCEEEEEE-----CCCCEEEEEcCCC
Q psy4876 535 -------QLIIWKY--PS-LVKVAEL----HG-----HSARVLNLAMSPDETTVLSAG-----ADETLRLWKIFEK 586 (609)
Q Consensus 535 -------~I~Iwd~--~~-~~~~~~l----~~-----h~~~V~~l~~spdg~~L~s~s-----~Dg~I~iWdl~~~ 586 (609)
.++|+.+ .+ +.....+ .. ....|..+.+-+++++|+-== ....++|+.+.-.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLS 251 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEcc
Confidence 1555544 33 2222222 21 346789999999999776422 3456677666543
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.16 E-value=1e+02 Score=34.12 Aligned_cols=270 Identities=16% Similarity=0.102 Sum_probs=137.9
Q ss_pred CceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 268 NDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 268 ~~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
.+..|..+-+...|.+=++.+..+..+|..+ ++..++.....+..|..+.-+-.|
T Consensus 163 ~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~-------------------------gkalql~s~~~dk~I~al~~d~qg 217 (671)
T COG3292 163 KDTPVVALVFDANGRLWVGTPDGLSYFDAGR-------------------------GKALQLASPPLDKAINALIADVQG 217 (671)
T ss_pred cCccceeeeeeccCcEEEecCCcceEEcccc-------------------------ceEEEcCCCcchhhHHHHHHHhcC
Confidence 3556777888888866677777778888777 555554444344666666666556
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecC-CCCceEEEEec-CCEEEEEecCCeEEEEEcCCCCeeEEEEccC--CCCeEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDG-HDVRVGALAWN-TYILSSGSRCGNIVHHDVRSRDHKVALLQNH--TQEVCG 423 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h--~~~V~~ 423 (609)
. |.+|+.+| |.+.+.+..+....... ....|..+.-| ...+-.|+..|-.+.---+. .-.......| -+.|.+
T Consensus 218 ~-LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq-~Lq~~~~~~~l~~S~vns 294 (671)
T COG3292 218 R-LWVGTDQG-VYLQEAEGWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQ-GLQIPLSKMHLGVSTVNS 294 (671)
T ss_pred c-EEEEeccc-eEEEchhhccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCC-CccccccccCCccccccc
Confidence 4 55688877 77777665222111111 22334444444 24566666666443322222 1111111112 245666
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCccc-EEEEEEcC--CCCcEEEEEeccCCCeEEEEECCC
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAA-VKAIAWCP--WSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp--~~~~llasggGs~Dg~I~iwd~~t 500 (609)
+-...+|. |-+++.++.+++-+.. - .....+....+. +..++..| .+..+... ..-+.+.+-+-.+
T Consensus 295 L~~D~dGs-LWv~t~~giv~~~~a~-w------~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~---ns~g~L~van~st 363 (671)
T COG3292 295 LWLDTDGS-LWVGTYGGIVRYLTAD-W------KRMAVINDSDGGVSQYEAVAPALLSWGVRQL---NSIGELMVANGST 363 (671)
T ss_pred eeeccCCC-EeeeccCceEEEecch-h------hheeeeecCCCchhhhhccCchhcccceeec---cccceEEEecCCC
Confidence 66666776 4455666665554322 1 111111111111 11111111 01011110 1223444455556
Q ss_pred CceeEEEcC--CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceEEEEeC-CCCCEEEEEEeCCCCEEEEEECCC
Q psy4876 501 GACLDSIDT--KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS-LVKVAELHG-HSARVLNLAMSPDETTVLSAGADE 576 (609)
Q Consensus 501 ~~~~~~~~~--~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~-~~~~~~l~~-h~~~V~~l~~spdg~~L~s~s~Dg 576 (609)
|..+.+... ...|+.+++..++..-+. +..+-+..|+..+ +..+.+..+ ..++|..|.=.|+++ |..|+.+|
T Consensus 364 G~~v~sv~q~Rg~nit~~~~d~~g~lWlg---s~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~G 439 (671)
T COG3292 364 GELVRSVHQLRGMNITTTLEDSRGRLWLG---SMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGG 439 (671)
T ss_pred CcEEEEeeeccccccchhhhccCCcEEEE---ecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCC
Confidence 666555322 235666777775554443 3465677777666 433333333 346788888888888 77788887
Q ss_pred CEEE
Q psy4876 577 TLRL 580 (609)
Q Consensus 577 ~I~i 580 (609)
.++.
T Consensus 440 lvk~ 443 (671)
T COG3292 440 LVKR 443 (671)
T ss_pred eEec
Confidence 6653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 609 | ||||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 1e-116 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-116 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-113 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 5e-80 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 3e-12 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 3e-10 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 3e-12 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 3e-10 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 4e-12 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-10 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 5e-12 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 3e-10 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 5e-12 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-10 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 6e-12 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 3e-10 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 6e-12 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-10 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 7e-12 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 4e-10 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 7e-12 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 4e-10 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 8e-12 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 4e-10 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 8e-12 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 4e-10 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 8e-12 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 4e-10 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 8e-12 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 4e-10 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 9e-12 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 4e-10 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-11 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 4e-10 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-11 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-11 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 9e-10 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 3e-11 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 9e-11 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 4e-10 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 1e-10 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-10 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-09 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 9e-07 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 1e-09 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-09 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 6e-07 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-09 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-06 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-07 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 4e-07 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 8e-07 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 2e-04 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 1e-06 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-05 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 1e-06 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-05 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 2e-06 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 2e-06 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 3e-05 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 3e-06 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 7e-06 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 8e-05 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 8e-06 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 9e-06 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-05 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 1e-05 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 1e-05 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 1e-05 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 1e-05 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 2e-05 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 5e-05 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 7e-05 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 1e-04 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 1e-04 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 1e-04 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 1e-04 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 2e-04 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 2e-04 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 2e-04 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-04 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 2e-04 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-04 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 2e-04 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 3e-04 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 4e-04 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 5e-04 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 5e-04 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 6e-04 |
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 609 | |||
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.98 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.98 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.98 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.98 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.98 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.98 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.98 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.98 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.95 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.95 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.94 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.93 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.92 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.92 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.92 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.92 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.91 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.91 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.91 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.9 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.89 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.89 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.87 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.87 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.87 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.86 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.86 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.86 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.85 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.85 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.85 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.84 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.84 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.84 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.84 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.83 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.82 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.81 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.81 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.8 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.8 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.79 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.78 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.77 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.77 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.75 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.74 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.74 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.72 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.71 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.7 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.7 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.68 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.68 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.67 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.67 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.63 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.63 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.62 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.62 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.62 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.61 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.61 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.61 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.59 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.58 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.57 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.57 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.56 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.54 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.53 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.53 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.52 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.52 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.51 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.5 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.5 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.47 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.46 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.44 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.44 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.44 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.42 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.41 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.4 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.39 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.39 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.38 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.37 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.37 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.35 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.32 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.31 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.29 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.28 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.27 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.24 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.21 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.21 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.2 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.16 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.15 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.14 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.12 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.12 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.09 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.07 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.05 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.04 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.03 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.01 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.01 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.01 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.0 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.96 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.92 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.89 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.87 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.83 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.83 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.82 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.79 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.79 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.78 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.77 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.74 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.73 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.71 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.7 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.67 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.65 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.64 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.63 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.61 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.6 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.59 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.58 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.57 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.56 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.53 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.51 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.51 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.49 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.49 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.46 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.45 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.43 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.41 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.4 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.39 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.38 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.35 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.33 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.31 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.29 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.29 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.28 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.27 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.25 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.24 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 98.22 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.21 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.21 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.19 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.18 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.18 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.09 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.99 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.97 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.94 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.88 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.86 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.86 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.85 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.84 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.82 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.81 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.8 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.73 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.64 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.59 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.56 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.56 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.46 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.46 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.45 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.45 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.39 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.39 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.33 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.33 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.31 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.26 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 97.25 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.22 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.19 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.19 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.14 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.01 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.85 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.84 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.77 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.75 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.7 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.62 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.6 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.49 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.46 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.45 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.42 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.41 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.29 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.21 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.16 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.16 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.6 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.52 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.36 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.28 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.19 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.18 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.1 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.95 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.54 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 94.45 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 94.43 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.3 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 94.17 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 93.76 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 92.88 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 91.06 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 83.51 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 81.08 |
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-65 Score=546.62 Aligned_cols=416 Identities=55% Similarity=0.991 Sum_probs=297.1
Q ss_pred cCCCCCCccccccccccCCCC-CCCCccHHHHHHHHHhHhcCCCCCCceEEeecCCCCCCCCCccchhhhhhhccccCCc
Q psy4876 108 PNRSAIDTELSHYLLTRDENM-EDLSPSEREKRKAMSELVHGKDIQKSRVLAFQNKAPPPPDGYQNSLKVALNSAITSSP 186 (609)
Q Consensus 108 p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (609)
|+|++||||.|+|+|++++.. +..+|.+.+|++++++.+++.+....|||+|+++|+.+|+++++.++++|
T Consensus 2 p~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------- 73 (420)
T 4gga_A 2 PHRSAAQMEVASFLLSKENQPENSQTPTKKEHQKAWALNLNGFDVEEAKILRLSGKPQNAPEGYQNRLKVLY-------- 73 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccCchhhhhccccccCCcccccCcchHHHHHHHHhhccccccccceEEeccCCCCCCCcccccCcceec--------
Confidence 899999999999999988766 66788899999999999988877788999999999999999999999888
Q ss_pred cceeeeeeeecccchhhhhhhhhhHHhhhhhhheeeeccCCcchhhhhhccCCCCCCCCCCCCccccCCCccccccCCcc
Q psy4876 187 EMKIWKISVHQNVKSVKLCQNLFMERIFKSLEYLLFKIKPLPHLMAIKILSNTSKTPMGSKPTSRYIPLTADRILDAPEI 266 (609)
Q Consensus 187 ~~~~~~~~v~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~r~i~~~p~~il~ap~~ 266 (609)
++ ...+...++..|+||..|+++|++|++
T Consensus 74 --------------------------------------------------~~-~~~~~~~~~~~r~i~~~p~~~l~ap~~ 102 (420)
T 4gga_A 74 --------------------------------------------------SQ-KATPGSSRKTCRYIPSLPDRILDAPEI 102 (420)
T ss_dssp ---------------------------------------------------------------CCCCCSSCSEEEECTTC
T ss_pred --------------------------------------------------cc-ccCCCCccCCCcccCCCCceEEECCCC
Confidence 33 234455667789999999999999999
Q ss_pred CCceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 267 QNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 267 ~~~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
.+|||+++|+||++++||+|.|++|+|||+.+ +++..+.++. |...|++|+|+|
T Consensus 103 ~~d~y~~~l~wS~~n~lAvgld~tV~lWd~~t-------------------------g~~~~~~~~~~~~~~V~sv~fsp 157 (420)
T 4gga_A 103 RNDYYLNLVDWSSGNVLAVALDNSVYLWSASS-------------------------GDILQLLQMEQPGEYISSVAWIK 157 (420)
T ss_dssp CCCTTCBCEEECTTSEEEEEETTEEEEEETTT-------------------------CCEEEEEECCSTTCCEEEEEECT
T ss_pred cccccceeEEECCCCEEEEEeCCEEEEEECCC-------------------------CCEEEEEEecCCCCcEEEEEECC
Confidence 99999999999999999999999999999999 8887777776 888999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
+|++||+|+.||.|+|||+.+++.+..+.+|...+.+++|++.+|++|+.|+.+.+||.......+..+.+|...++.+.
T Consensus 158 dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~ 237 (420)
T 4gga_A 158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 237 (420)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999988778888999999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeE
Q psy4876 426 WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLD 505 (609)
Q Consensus 426 ~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~ 505 (609)
|+|++.++++++.|+.|++||...+... ...+.....|...|.+++|+|++..++++++|+.|++|++||+.+++++.
T Consensus 238 ~~~~g~~l~s~~~D~~v~i~~~~~~~~~--~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 238 WAPDGRHLASGGNDNLVNVWPSAPGEGG--WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp ECTTSSEEEEEETTSCEEEEESSCCSSC--SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE
T ss_pred ecCCCCeeeeeeccccceEEeecccccc--ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce
Confidence 9999999999999999999999877432 24566778899999999999999999999888999999999999999999
Q ss_pred EEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 506 SIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 506 ~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
.+..+..+.++.|+++++.+++++|+.|+.|+|||+++++++..+.+|.+.|++++|+|||.+|+||+.|++|+|||+++
T Consensus 316 ~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 316 AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred eeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999999998
Q ss_pred Cccchhhhhh-cccccccccccCCC
Q psy4876 586 KVKSKKKEIK-NNASKFNSMFNSIR 609 (609)
Q Consensus 586 ~~~~~k~~~~-~~~~~~~~~~~~i~ 609 (609)
..+.++++.. ........++++||
T Consensus 396 ~~~~~~~~~~~~~~~~~s~~~~gir 420 (420)
T 4gga_A 396 LDPARRREREKASAAKSSLIHQGIR 420 (420)
T ss_dssp SSCC---------------------
T ss_pred CCccchhhhccCCccccccCCCCCC
Confidence 8777666553 33344455678887
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-53 Score=455.49 Aligned_cols=385 Identities=42% Similarity=0.789 Sum_probs=298.4
Q ss_pred CccccCCCCCCccccccccccCCCCCCCCccHHHHHHHHHhHhcCCCCCCceEEeecCCCCCCCCCccchhhhhhhcccc
Q psy4876 104 DRYIPNRSAIDTELSHYLLTRDENMEDLSPSEREKRKAMSELVHGKDIQKSRVLAFQNKAPPPPDGYQNSLKVALNSAIT 183 (609)
Q Consensus 104 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (609)
|||||+|+ |||.|||+++++. ...+|+++|++.+.-.- +.|||.|..+||... ....+...|
T Consensus 1 ~~~~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~r~l~~~~~~~~~~--~~~~~~~~~----- 62 (401)
T 4aez_A 1 DRFIPSRP--NTANAFVNSISSD-------VPFDYSESVAEACGFDL--NTRVLAFKLDAPEAK--KPVDLRTQH----- 62 (401)
T ss_dssp ----------------------------------------------C--CEEEEEECSCCCCCC--CCCC----------
T ss_pred CCcCCCch--hhhHHHHhhcCCc-------chHHHHHHHHHHcCCCc--cCcEEeeCCCCCCCc--Ccccchhhc-----
Confidence 89999999 9999999997763 23579999999985332 579999997665432 233344444
Q ss_pred CCccceeeeeeeecccchhhhhhhhhhHHhhhhhhheeeeccCCcchhhhhhccCCCCCCCCCCCCccccCCCccccccC
Q psy4876 184 SSPEMKIWKISVHQNVKSVKLCQNLFMERIFKSLEYLLFKIKPLPHLMAIKILSNTSKTPMGSKPTSRYIPLTADRILDA 263 (609)
Q Consensus 184 ~~~~~~~~~~~v~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~r~i~~~p~~il~a 263 (609)
.+ ...|.. ....|.++..|++++++
T Consensus 63 -----------------------------------------------------~~-~~~~~~-~~~~r~~~~~p~~~~~~ 87 (401)
T 4aez_A 63 -----------------------------------------------------NR-PQRPVV-TPAKRRFNTTPERVLDA 87 (401)
T ss_dssp -------------------------------------------------------------------CCCCCSCSEEEEC
T ss_pred -----------------------------------------------------cc-ccCCcc-ccccCcCCCCcceeeeC
Confidence 11 111211 24568899999999999
Q ss_pred CccCCceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEE
Q psy4876 264 PEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAW 343 (609)
Q Consensus 264 p~~~~~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~ 343 (609)
|+..+++++++++|+++.+++++.|+.|++||+.+ +.........|...|++++|
T Consensus 88 ~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~-------------------------~~~~~~~~~~~~~~v~~v~~ 142 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADS-------------------------GSVSALAETDESTYVASVKW 142 (401)
T ss_dssp TTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTT-------------------------CCEEEEEECCTTCCEEEEEE
T ss_pred CCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCC-------------------------CcEeEeeecCCCCCEEEEEE
Confidence 99999999999999999999999999999999998 77666666668899999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 344 IQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 344 spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|++++|++|+.||.|++||++.....+..+.+|...|.+
T Consensus 143 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 222 (401)
T 4aez_A 143 SHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCG 222 (401)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred CCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999666778889999999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC 503 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~ 503 (609)
++|+|++.+|++|+.|+.|++||++++ .++..+..|...|.+++|+|++..++++|+|+.|+.|++||+.++++
T Consensus 223 ~~~~~~~~~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~ 296 (401)
T 4aez_A 223 LAWRSDGLQLASGGNDNVVQIWDARSS------IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR 296 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTCS------SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE
T ss_pred EEEcCCCCEEEEEeCCCeEEEccCCCC------CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE
Confidence 999999999999999999999999987 77888889999999999999999999998777899999999999999
Q ss_pred eEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE--EEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEE
Q psy4876 504 LDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKV--AELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581 (609)
Q Consensus 504 ~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~--~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iW 581 (609)
+..+..+..+.+++|+++++++++++|+.||.|+|||+.++... ..+.+|...|.+++|+|+|.+|++++.||.|++|
T Consensus 297 ~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw 376 (401)
T 4aez_A 297 VNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376 (401)
T ss_dssp EEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEE
T ss_pred EEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 99999999999999999999999988889999999999986544 4567999999999999999999999999999999
Q ss_pred EcCCCccchhh
Q psy4876 582 KIFEKVKSKKK 592 (609)
Q Consensus 582 dl~~~~~~~k~ 592 (609)
++.+++...+.
T Consensus 377 ~~~~~~~~~~~ 387 (401)
T 4aez_A 377 RVYDGDHVKRP 387 (401)
T ss_dssp ECCC-------
T ss_pred ECCCCcccccc
Confidence 99988766543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-48 Score=395.38 Aligned_cols=315 Identities=63% Similarity=1.123 Sum_probs=290.9
Q ss_pred CCCccccCCCccccccCCccCCceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccce
Q psy4876 247 KPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAI 326 (609)
Q Consensus 247 ~~~~r~i~~~p~~il~ap~~~~~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (609)
++..|++|..|+++|++|++.+|||+++|+||++++||+|.|++|+|||+.+ ++.
T Consensus 3 ~~~~r~~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~t-------------------------g~~ 57 (318)
T 4ggc_A 3 RKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASS-------------------------GDI 57 (318)
T ss_dssp ---CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTT-------------------------CCE
T ss_pred CCCCcccCCCCCEEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECCC-------------------------CCE
Confidence 4567999999999999999999999999999999999999999999999998 777
Q ss_pred eeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcC
Q psy4876 327 DHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVR 405 (609)
Q Consensus 327 ~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~ 405 (609)
..+.++. |...|++++|+|++++||+|+.||.|+|||+.+++.+..+.+|...+.++.+++.++++++.++.+.+|+..
T Consensus 58 ~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~ 137 (318)
T 4ggc_A 58 LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVR 137 (318)
T ss_dssp EEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecC
Confidence 7777766 888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEE
Q psy4876 406 SRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 406 ~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 485 (609)
.....+..+.+|...+..+.|++++++|++++.|+.|++||+++++.. .........+.+.|.+++++|++..++.++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 215 (318)
T 4ggc_A 138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG--WVPLQTFTQHQGAVKAVAWCPWQSNVLATG 215 (318)
T ss_dssp SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB--SCCSEEECCCCSCEEEEEECTTSTTEEEEE
T ss_pred CCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc--ccceeeecccCCceEEEEecCCCCcEEEEE
Confidence 887788889999999999999999999999999999999999887432 134556667889999999999999998877
Q ss_pred eccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCC
Q psy4876 486 GGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPD 565 (609)
Q Consensus 486 gGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spd 565 (609)
+|+.++.|++||...............+..+.|++++..+++++|..|+.|+|||+.+++++..+.+|.+.|++++|+||
T Consensus 216 ~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spd 295 (318)
T 4ggc_A 216 GGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 295 (318)
T ss_dssp ECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred ecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 77899999999999999998888889999999999999999998889999999999999999999999999999999999
Q ss_pred CCEEEEEECCCCEEEEEcCCCcc
Q psy4876 566 ETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 566 g~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
|++|+||+.||+|+|||+++.++
T Consensus 296 g~~l~S~s~D~~v~iWd~~~~dP 318 (318)
T 4ggc_A 296 GATVASAAADETLRLWRCFELDP 318 (318)
T ss_dssp SSCEEEEETTTEEEEECCSCCCC
T ss_pred CCEEEEEecCCeEEEEECCCCCC
Confidence 99999999999999999987653
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-41 Score=360.56 Aligned_cols=278 Identities=24% Similarity=0.401 Sum_probs=252.4
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|++++|+|++ +++++.|+.|+|||+.+ +... ..+. |.+.|.+++|+|
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~-------------------------~~~~--~~l~~h~~~V~~v~~~~ 160 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYET-------------------------GDFE--RTLKGHTDSVQDISFDH 160 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTT-------------------------CCCC--EEECCCSSCEEEEEECT
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-------------------------CcEE--EEEeccCCcEEEEEEcC
Confidence 3469999999986 77788999999999988 5433 3445 899999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
+|++|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++|+.|++|++||++++ ..+..+.+|...|.+
T Consensus 161 ~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~-~~~~~~~~h~~~v~~ 239 (410)
T 1vyh_C 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-YCVKTFTGHREWVRM 239 (410)
T ss_dssp TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEeCCCccEEE
Confidence 9999999999999999999999999999999999999999 5789999999999999999987 478889999999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC-------------------CcEEEE
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS-------------------PNVLAS 484 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-------------------~~llas 484 (609)
++|+|+|.+|++|+.|+.|++||+.++ .....+.+|...|.+++|+|++ ..++++
T Consensus 240 ~~~~~~g~~l~s~s~D~~v~vwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s 313 (410)
T 1vyh_C 240 VRPNQDGTLIASCSNDQTVRVWVVATK------ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313 (410)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCC------ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence 999999999999999999999999987 6778889999999999999973 246777
Q ss_pred EeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEe
Q psy4876 485 GGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMS 563 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~s 563 (609)
|+ .|+.|++||++++.++..+..+ ..|.+++|+|++++|+++ +.|+.|+|||+.+++++..+.+|...|++++|+
T Consensus 314 gs--~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~--s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~ 389 (410)
T 1vyh_C 314 GS--RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC--ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 389 (410)
T ss_dssp EE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEE--ETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC
T ss_pred Ee--CCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEE--eCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc
Confidence 64 8999999999999999988765 479999999999999984 489999999999999999999999999999999
Q ss_pred CCCCEEEEEECCCCEEEEEcC
Q psy4876 564 PDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 564 pdg~~L~s~s~Dg~I~iWdl~ 584 (609)
|++.+|++|+.|++|+||++.
T Consensus 390 ~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 390 KTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SSSSCEEEEETTSEEEEEC--
T ss_pred CCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999863
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=343.86 Aligned_cols=278 Identities=22% Similarity=0.395 Sum_probs=252.5
Q ss_pred ceeEEEEEecCC----C--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEE
Q psy4876 269 DYYLNLIDWSHF----N--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSV 341 (609)
Q Consensus 269 ~~~v~~l~wsp~----~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v 341 (609)
+-.|.+|+|+++ + +++++.|++|+||++.. +.......+. |...|.++
T Consensus 32 ~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~-------------------------~~~~~~~~l~gh~~~v~~~ 86 (321)
T 3ow8_A 32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD-------------------------ERLDLQWSLEGHQLGVVSV 86 (321)
T ss_dssp SSCEEEEEEC-------CEEEEEETTSCEEEEEEET-------------------------TEEEEEEEECCCSSCEEEE
T ss_pred CCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCC-------------------------CCeeeeeeeccCCCCEEEE
Confidence 446899999874 2 77799999999999977 5555556666 99999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 342 AWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 342 ~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
+|++++.++++|+.|+.|+|||+.+++.+..+..|...+.+++| ++.+|++|+.||.|++||+..+. ....+..|..
T Consensus 87 ~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-~~~~~~~~~~ 165 (321)
T 3ow8_A 87 DISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK-KEYSLDTRGK 165 (321)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS-EEEEEECSSS
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc-eeEEecCCCc
Confidence 99999999999999999999999999999999999999999999 57899999999999999999874 6677888999
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS 499 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~ 499 (609)
.|.+++|+|+|++|++|+.||.|++||++++ +.+..+.+|...|.+++|+|++. +|++| +.|+.|++||++
T Consensus 166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~spd~~-~l~s~--s~dg~i~iwd~~ 236 (321)
T 3ow8_A 166 FILSIAYSPDGKYLASGAIDGIINIFDIATG------KLLHTLEGHAMPIRSLTFSPDSQ-LLVTA--SDDGYIKIYDVQ 236 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSCCCEEEECTTSC-EEEEE--CTTSCEEEEETT
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCC------cEEEEEcccCCceeEEEEcCCCC-EEEEE--cCCCeEEEEECC
Confidence 9999999999999999999999999999988 78889999999999999999885 66676 489999999999
Q ss_pred CCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCE
Q psy4876 500 SGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETL 578 (609)
Q Consensus 500 t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I 578 (609)
+++++..+..+ ..|.+++|+|++.+|+++ +.|+.|+|||+.+++++..+.+|.+.|.+++|+|++.+|++++.|++|
T Consensus 237 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~--s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i 314 (321)
T 3ow8_A 237 HANLAGTLSGHASWVLNVAFCPDDTHFVSS--SSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEI 314 (321)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSEEEEE--ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCE
T ss_pred CcceeEEEcCCCCceEEEEECCCCCEEEEE--eCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 99999888766 479999999999999984 489999999999999999999999999999999999999999999999
Q ss_pred EEEEc
Q psy4876 579 RLWKI 583 (609)
Q Consensus 579 ~iWdl 583 (609)
+|||+
T Consensus 315 ~vwd~ 319 (321)
T 3ow8_A 315 HIYDC 319 (321)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99997
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-40 Score=342.13 Aligned_cols=274 Identities=17% Similarity=0.363 Sum_probs=246.6
Q ss_pred eeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
..|.+++|+|++ +++++.|+.|+|||+.+ +.. +..+. |...|.+++|+|+
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~-------------------------~~~--~~~~~~~~~~v~~~~~s~~ 108 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYT-------------------------TNK--VHAIPLRSSWVMTCAYAPS 108 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTT-------------------------CCE--EEEEECSSSCEEEEEECTT
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCC-------------------------CCc--ceEeecCCccEEEEEECCC
Confidence 458999999986 77799999999999987 443 33444 8889999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCC----eeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCe
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAK----KKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEV 421 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 421 (609)
|++|++|+.|+.|++||+.++ .....+.+|...|.++.| ++..+++++.||.|++||+.++ ..+..+.+|...|
T Consensus 109 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~-~~~~~~~~h~~~v 187 (340)
T 1got_B 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDV 187 (340)
T ss_dssp SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCE
T ss_pred CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCC-cEEEEEcCCCCce
Confidence 999999999999999999865 456778899999999999 4567999999999999999987 5788899999999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 422 CGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 422 ~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
.+++|+|++++|++|+.|+.|++||++++ ..+..+.+|...|.+++|+|++. ++++|+ .|+.|++||++++
T Consensus 188 ~~~~~~~~~~~l~sg~~d~~v~~wd~~~~------~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s--~d~~v~iwd~~~~ 258 (340)
T 1got_B 188 MSLSLAPDTRLFVSGACDASAKLWDVREG------MCRQTFTGHESDINAICFFPNGN-AFATGS--DDATCRLFDLRAD 258 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTC------SEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTT
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCC------eeEEEEcCCcCCEEEEEEcCCCC-EEEEEc--CCCcEEEEECCCC
Confidence 99999999999999999999999999988 77888999999999999999884 666664 8999999999999
Q ss_pred ceeEEEcCCC---CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCE
Q psy4876 502 ACLDSIDTKS---QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETL 578 (609)
Q Consensus 502 ~~~~~~~~~~---~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I 578 (609)
+.+..+.+.. .|.+++|+|+++++++ |+.|+.|+|||+.++..+..+.+|.+.|.+++|+|+|.+|++|+.|++|
T Consensus 259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i 336 (340)
T 1got_B 259 QELMTYSHDNIICGITSVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336 (340)
T ss_dssp EEEEEECCTTCCSCEEEEEECTTSSEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred cEEEEEccCCcccceEEEEECCCCCEEEE--ECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccE
Confidence 8888776543 7999999999999999 5589999999999999999999999999999999999999999999999
Q ss_pred EEEE
Q psy4876 579 RLWK 582 (609)
Q Consensus 579 ~iWd 582 (609)
+|||
T Consensus 337 ~iWd 340 (340)
T 1got_B 337 KIWN 340 (340)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=337.89 Aligned_cols=290 Identities=17% Similarity=0.181 Sum_probs=232.9
Q ss_pred eeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 270 YYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 270 ~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
-.|.+++|+||| +|+++.|+++++||... ..+... ............+.+...|.+++|+|++
T Consensus 31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~-------~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~s~d~- 94 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGASSLSGRCWAGSL-------WLFKDP--------CAAPNEGFCSAGVQTEAGVADLTWVGER- 94 (344)
T ss_dssp SEEEEEEECTTSCEEEEEECCSSSCCCEEE-------EEESSG--------GGTTCGGGCSEEEEESSCEEEEEEETTT-
T ss_pred CCEEEEEECCCCCEEEEEeCCceEEeecee-------eeeccc--------cccCCcceeeeeeccCCCEEEEEEeCCC-
Confidence 358999999997 77777798999997432 000000 0000011112223367889999999985
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEE----ecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRT----MDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~----l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
.|++|+.||.|+|||+.+++.+.. +.+|...|.+++| ++.+|++|+.||+|++||+.++ ..+..+.+|...|.
T Consensus 95 ~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 95 GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-VVLSSYRAHAAQVT 173 (344)
T ss_dssp EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEE
T ss_pred eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-cEEEEEcCcCCceE
Confidence 678999999999999998875443 4589999999999 5799999999999999999987 58889999999999
Q ss_pred EEEEccCCC-EEEEEeCCCcEEEEeCCCCCCCCCccceEeec--CCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC
Q psy4876 423 GLKWSPDGR-YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS--RHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS 499 (609)
Q Consensus 423 ~l~~spdg~-~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~ 499 (609)
+++|++++. +|++|+.|+.|++||++++ +++..+. .|...+.+++|+|++..++++|+ .|+.|++||++
T Consensus 174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~--~dg~v~~wd~~ 245 (344)
T 4gqb_B 174 CVAASPHKDSVFLSCSEDNRILLWDTRCP------KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD--ENGTVSLVDTK 245 (344)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTSS------SCEEECC----CCCEEEEEECSSCTTEEEEEE--TTSEEEEEESC
T ss_pred EEEecCCCCCceeeecccccccccccccc------ceeeeeecceeeccceeeeecCCCCcceEEec--cCCcEEEEECC
Confidence 999999874 7899999999999999988 5555553 45567999999998888999874 89999999999
Q ss_pred CCceeEEEcCC-CCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCC-EEEEEECCC
Q psy4876 500 SGACLDSIDTK-SQVCALLWNSDYK-ELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET-TVLSAGADE 576 (609)
Q Consensus 500 t~~~~~~~~~~-~~v~sl~~s~~g~-~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~L~s~s~Dg 576 (609)
+++++..+..+ ..|.+++|+|++. +|++ |+.|++|+|||+.+++.+ .+.+|.+.|++++|+|++. +|++++.|+
T Consensus 246 ~~~~~~~~~~h~~~v~~v~fsp~g~~~las--gs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~ 322 (344)
T 4gqb_B 246 STSCVLSSAVHSQCVTGLVFSPHSVPFLAS--LSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDH 322 (344)
T ss_dssp C--CCEEEECCSSCEEEEEECSSSSCCEEE--EETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred CCcEEEEEcCCCCCEEEEEEccCCCeEEEE--EeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCC
Confidence 99999999866 5899999999985 5666 458999999999988755 5789999999999999986 677999999
Q ss_pred CEEEEEcCCCc
Q psy4876 577 TLRLWKIFEKV 587 (609)
Q Consensus 577 ~I~iWdl~~~~ 587 (609)
+|++|++.+..
T Consensus 323 ~v~~w~v~~~~ 333 (344)
T 4gqb_B 323 QVVHHVVPTEP 333 (344)
T ss_dssp CEEEEECCC--
T ss_pred eEEEEECCCCC
Confidence 99999997654
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=326.77 Aligned_cols=282 Identities=19% Similarity=0.315 Sum_probs=246.1
Q ss_pred ceeEEEEEecCCC---eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSHFN---VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp~~---lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~s 344 (609)
...|++|+|+|++ +++++.|++|++|++..... .....+..+. |...|.+++|+
T Consensus 17 ~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~----------------------~~~~~~~~~~~h~~~v~~~~~s 74 (319)
T 3frx_A 17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ----------------------KFGVPVRSFKGHSHIVQDCTLT 74 (319)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT----------------------EEEEEEEEEECCSSCEEEEEEC
T ss_pred cceEEEEEccCCCccEEEEecCCccEEEecCCCCCc----------------------cccccceEEeCCcccEEEEEEC
Confidence 3458999999853 67799999999999865100 1123455566 99999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
|+|++|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++|+.|++|++||++. ..+..+.+|...|.
T Consensus 75 ~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~ 152 (319)
T 3frx_A 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVS 152 (319)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--CEEEEECCCSSCEE
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEEeccCCcEE
Confidence 99999999999999999999999999999999999999999 468999999999999999975 36788899999999
Q ss_pred EEEEccC------CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEE
Q psy4876 423 GLKWSPD------GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496 (609)
Q Consensus 423 ~l~~spd------g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iw 496 (609)
+++|+|. +.+|++++.|+.|++||++.. +....+.+|...|.+++|+|++. +|++|+ .|+.|++|
T Consensus 153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~------~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~--~dg~i~iw 223 (319)
T 3frx_A 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF------QIEADFIGHNSNINTLTASPDGT-LIASAG--KDGEIMLW 223 (319)
T ss_dssp EEEECCC------CCEEEEEETTSCEEEEETTTT------EEEEEECCCCSCEEEEEECTTSS-EEEEEE--TTCEEEEE
T ss_pred EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc------hhheeecCCCCcEEEEEEcCCCC-EEEEEe--CCCeEEEE
Confidence 9999984 458999999999999999987 67788899999999999999985 666664 89999999
Q ss_pred ECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC--------CCCCEEEEEEeCCCCE
Q psy4876 497 NVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG--------HSARVLNLAMSPDETT 568 (609)
Q Consensus 497 d~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~--------h~~~V~~l~~spdg~~ 568 (609)
|+.+++++..+..+..+.+++|+|++.+++++. ++.+++|++.....+..+.. |...|.+++|+|||++
T Consensus 224 d~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 300 (319)
T 3frx_A 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT---ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQT 300 (319)
T ss_dssp ETTTTEEEEEEECCSCEEEEEECSSSSEEEEEE---TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSE
T ss_pred ECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEc---CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCE
Confidence 999999999999889999999999999998854 56799999988877776643 4567999999999999
Q ss_pred EEEEECCCCEEEEEcCCC
Q psy4876 569 VLSAGADETLRLWKIFEK 586 (609)
Q Consensus 569 L~s~s~Dg~I~iWdl~~~ 586 (609)
|++|+.||.|+|||+.+.
T Consensus 301 l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 301 LFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEETTSCEEEEEEEEC
T ss_pred EEEeecCceEEEEEEeec
Confidence 999999999999999763
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=332.63 Aligned_cols=276 Identities=20% Similarity=0.373 Sum_probs=244.2
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccC
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQE 346 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spd 346 (609)
...|++++|+|++ +++++.|+.|+|||..+ +........ |...|.+++|+|+
T Consensus 64 ~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~-------------------------~~~~~~~~~-~~~~v~~~~~sp~ 117 (354)
T 2pbi_B 64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT-------------------------TNKEHAVTM-PCTWVMACAYAPS 117 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTT-------------------------CCEEEEEEC-SSSCCCEEEECTT
T ss_pred CCeEEEEEECCCCCEEEEEeCCCeEEEEECCC-------------------------CCcceEEec-CCCCEEEEEECCC
Confidence 3458999999986 77799999999999887 443333222 7789999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCC------eeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCC
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAK------KKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHT 418 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~------~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 418 (609)
|.+||+|+.|+.|++|++... .....+.+|...|.+++| ++..|++++.||+|++||+.++ ..+..+.+|.
T Consensus 118 g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-~~~~~~~~h~ 196 (354)
T 2pbi_B 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG-QLLQSFHGHG 196 (354)
T ss_dssp SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-CEEEEEECCS
T ss_pred CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEcCCC
Confidence 999999999999999998643 345677789999999999 4679999999999999999987 4788899999
Q ss_pred CCeEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEE
Q psy4876 419 QEVCGLKWSP--DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496 (609)
Q Consensus 419 ~~V~~l~~sp--dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iw 496 (609)
..|.+++|+| +|.+|++|+.||.|++||++++ +++..+..|...|.+++|+|++. ++++|+ .|+.|++|
T Consensus 197 ~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~------~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s--~D~~v~lw 267 (354)
T 2pbi_B 197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG------QCVQAFETHESDVNSVRYYPSGD-AFASGS--DDATCRLY 267 (354)
T ss_dssp SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEE
T ss_pred CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC------cEEEEecCCCCCeEEEEEeCCCC-EEEEEe--CCCeEEEE
Confidence 9999999988 5789999999999999999988 77888999999999999999884 667764 89999999
Q ss_pred ECCCCceeEEEcCC---CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEE
Q psy4876 497 NVSSGACLDSIDTK---SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAG 573 (609)
Q Consensus 497 d~~t~~~~~~~~~~---~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s 573 (609)
|++++..+..+..+ ..+.+++|+|++.++++ |+.|+.|+|||+.++..+..+.+|.+.|.+++|+|||.+|++|+
T Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~--g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs 345 (354)
T 2pbi_B 268 DLRADREVAIYSKESIIFGASSVDFSLSGRLLFA--GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS 345 (354)
T ss_dssp ETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE--EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred ECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE--EECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEc
Confidence 99998887777544 36899999999999998 55899999999999999999999999999999999999999999
Q ss_pred CCCCEEEEE
Q psy4876 574 ADETLRLWK 582 (609)
Q Consensus 574 ~Dg~I~iWd 582 (609)
.|++|+||+
T Consensus 346 ~D~~v~vW~ 354 (354)
T 2pbi_B 346 WDHTLRVWA 354 (354)
T ss_dssp TTSEEEEEC
T ss_pred CCCCEEecC
Confidence 999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-38 Score=319.96 Aligned_cols=278 Identities=18% Similarity=0.286 Sum_probs=241.2
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
.|.+|+|+|++ +++++.||.|+|||+.+ +. .+..+. |...|.+++|+|++
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~-------------------------~~--~~~~~~~~~~~v~~~~~~~~~ 67 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYET-------------------------QV--EVRSIQVTETPVRAGKFIARK 67 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTT-------------------------TE--EEEEEECCSSCEEEEEEEGGG
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCC-------------------------Cc--eeEEeeccCCcEEEEEEeCCC
Confidence 58999999997 77789999999999987 43 334455 88899999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
++|++|+.|+.|+|||+.+++.+..+.+|...|.+++| ++.+|++|+.||+|++||+++.......+.+|...|.+++
T Consensus 68 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~ 147 (304)
T 2ynn_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147 (304)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEE
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEE
Confidence 99999999999999999999999999999999999999 4689999999999999999987667788899999999999
Q ss_pred Ecc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCC-CcEEEEEeccCCCeEEEEECCCCc
Q psy4876 426 WSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWS-PNVLASGGGTADRHIYFWNVSSGA 502 (609)
Q Consensus 426 ~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~-~~llasggGs~Dg~I~iwd~~t~~ 502 (609)
|+| ++.+|++|+.|+.|++||+... .+...+ ..|...+..++|+|.. ..++++|+ .|+.|++||+++++
T Consensus 148 ~~p~~~~~l~sgs~D~~v~iwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s--~D~~i~iWd~~~~~ 219 (304)
T 2ynn_A 148 FNPKDPSTFASGCLDRTVKVWSLGQS------TPNFTLTTGQERGVNYVDYYPLPDKPYMITAS--DDLTIKIWDYQTKS 219 (304)
T ss_dssp ECTTCTTEEEEEETTSEEEEEETTCS------SCSEEEECCCTTCEEEEEECCSTTCCEEEEEE--TTSEEEEEETTTTE
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCC------CccceeccCCcCcEEEEEEEEcCCCCEEEEEc--CCCeEEEEeCCCCc
Confidence 999 6889999999999999999876 333333 4566889999998842 35777764 89999999999999
Q ss_pred eeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCC--EEEEEECCCCEE
Q psy4876 503 CLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET--TVLSAGADETLR 579 (609)
Q Consensus 503 ~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~--~L~s~s~Dg~I~ 579 (609)
++..+..+ ..|.+++|+|++..|++ |+.|+.|+|||..+++.+..+..|...+.+++|+|++. +|++|+ |..+.
T Consensus 220 ~~~~~~~h~~~v~~~~~~p~~~~l~s--~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~ 296 (304)
T 2ynn_A 220 CVATLEGHMSNVSFAVFHPTLPIIIS--GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFT 296 (304)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEE--EETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEE-TTEEE
T ss_pred cceeeCCCCCCEEEEEECCCCCEEEE--EcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEec-CCceE
Confidence 99999866 58999999999999988 44899999999999999999999999999999999875 466665 55588
Q ss_pred EEEcCCC
Q psy4876 580 LWKIFEK 586 (609)
Q Consensus 580 iWdl~~~ 586 (609)
+|++...
T Consensus 297 ~~~~~~~ 303 (304)
T 2ynn_A 297 VLSLGND 303 (304)
T ss_dssp EEECC--
T ss_pred EEEeccC
Confidence 8887653
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=329.53 Aligned_cols=286 Identities=22% Similarity=0.348 Sum_probs=234.6
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeee-c-CCCCeEEEEEccC
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL-E-GNENVCSVAWIQE 346 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-h~~~V~~v~~spd 346 (609)
.|.+|+|+|++ +++++.|+.|+|||+.+ +.......+ . |...|.+++|+|+
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~-------------------------~~~~~~~~~~~~h~~~v~~~~~sp~ 72 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEG-------------------------DSWICKSVLSEGHQRTVRKVAWSPC 72 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEET-------------------------TEEEEEEEECSSCSSCEEEEEECTT
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCC-------------------------CcceeeeeeccccCCcEEEEEECCC
Confidence 57889999997 66788999999999977 433222222 3 8999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCC--eeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCC--eeEEEEccCCCC
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAK--KKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRD--HKVALLQNHTQE 420 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~--~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~ 420 (609)
|++||+|+.|+.|+|||+..+ +.+..+.+|...|.+++| ++.+|++|+.|+.|++||++... ..+..+.+|...
T Consensus 73 g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~ 152 (345)
T 3fm0_A 73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD 152 (345)
T ss_dssp SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC
T ss_pred CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC
Confidence 999999999999999999876 467889999999999999 57899999999999999998754 345678899999
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
|.+++|+|++.+|++|+.|+.|++||.+.+.. .....+.+|...|.+++|+|++. +|++|+ .|+.|++||...
T Consensus 153 v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~----~~~~~~~~h~~~v~~l~~sp~g~-~l~s~s--~D~~v~iW~~~~ 225 (345)
T 3fm0_A 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDW----VCCATLEGHESTVWSLAFDPSGQ-RLASCS--DDRTVRIWRQYL 225 (345)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEEEETTEE----EEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEEEEC
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEecCCCE----EEEEEecCCCCceEEEEECCCCC-EEEEEe--CCCeEEEecccc
Confidence 99999999999999999999999999886521 34577889999999999999985 666664 899999999632
Q ss_pred C---------------ceeEEEc--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc--------eE-EEEeCCC
Q psy4876 501 G---------------ACLDSID--TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV--------KV-AELHGHS 554 (609)
Q Consensus 501 ~---------------~~~~~~~--~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~--------~~-~~l~~h~ 554 (609)
. .++..+. +...|.+++|++++..+++++ .|+.|++|+..... .. ....+|.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~ 303 (345)
T 3fm0_A 226 PGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATAC--GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHS 303 (345)
T ss_dssp TTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEE--TTSCEEEEEECTTSCTTSCCEEEEEEETTSSS
T ss_pred CCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEe--CCCeEEEEEeCCCCCcceeeEEEEeeeccccc
Confidence 2 2334443 345899999999999999854 79999999986542 11 2235799
Q ss_pred CCEEEEEEeCCC-CEEEEEECCCCEEEEEcCCCccch
Q psy4876 555 ARVLNLAMSPDE-TTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 555 ~~V~~l~~spdg-~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
..|++++|+|++ .+|++|+.||+|+||++.......
T Consensus 304 ~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 304 QDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred CcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 999999999998 499999999999999998876544
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-39 Score=339.32 Aligned_cols=281 Identities=17% Similarity=0.349 Sum_probs=244.0
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|++++|+|++ +++++.|++|+|||+.+ +.. +..+. |...|.+++|+|
T Consensus 66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~-------------------------~~~--~~~~~~h~~~v~~~~~s~ 118 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALT-------------------------SQK--THAIKLHCPWVMECAFAP 118 (380)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEETTT-------------------------TEE--EEEEECCCTTCCCCEECT
T ss_pred ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-------------------------Ccc--ceEEecCCCCEEEEEECC
Confidence 3468999999986 77899999999999987 443 33444 889999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCe-------eEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEE-
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKK-------KCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALL- 414 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~-------~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~- 414 (609)
+|++||+|+.|+.|+|||+.+.. ....+.+|...|.++.|. +..|++|+.|++|++||+.++. .+..+
T Consensus 119 ~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~ 197 (380)
T 3iz6_a 119 NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ-RISIFG 197 (380)
T ss_dssp TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC-EEEEEC
T ss_pred CCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc-EEEEee
Confidence 99999999999999999987532 345678999999999994 4679999999999999999874 55555
Q ss_pred ----ccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC
Q psy4876 415 ----QNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA 489 (609)
Q Consensus 415 ----~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~ 489 (609)
.+|...|.+++|++ ++.+|++|+.|+.|++||++... ..+..+.+|...|.+++|+|++. +|++| +.
T Consensus 198 ~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-----~~~~~~~~h~~~v~~v~~~p~~~-~l~s~--s~ 269 (380)
T 3iz6_a 198 SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-----RAVRTYHGHEGDINSVKFFPDGQ-RFGTG--SD 269 (380)
T ss_dssp CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-----CCCEEECCCSSCCCEEEECTTSS-EEEEE--CS
T ss_pred cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-----cceEEECCcCCCeEEEEEecCCC-eEEEE--cC
Confidence 57999999999987 88999999999999999998442 57788899999999999999884 66676 48
Q ss_pred CCeEEEEECCCCceeEEEcCCC--------CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEE----eCCCCCE
Q psy4876 490 DRHIYFWNVSSGACLDSIDTKS--------QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL----HGHSARV 557 (609)
Q Consensus 490 Dg~I~iwd~~t~~~~~~~~~~~--------~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l----~~h~~~V 557 (609)
|+.|++||+++++++..+..+. .+.+++|+|+|+++++ |+.||.|+|||...++.+..+ .+|.+.|
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v 347 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFA--GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRI 347 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEE--ECTTSCEEEEETTTCCEEEEECCSCSSCCCCC
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEE--EECCCCEEEEECCCCceEEEEecccCCCCCce
Confidence 9999999999999988876432 3899999999999998 668999999999999988877 6799999
Q ss_pred EEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 558 LNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 558 ~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
.+++|+|||.+|++|+.|++|+||++....
T Consensus 348 ~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 348 SCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 999999999999999999999999998653
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=333.35 Aligned_cols=288 Identities=17% Similarity=0.263 Sum_probs=227.6
Q ss_pred ceeEEEEEecCCC-eE-EEEc------CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEE
Q psy4876 269 DYYLNLIDWSHFN-VL-AVAL------GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCS 340 (609)
Q Consensus 269 ~~~v~~l~wsp~~-ll-a~s~------dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~ 340 (609)
+..|++|+||||| +| +++. |+.|++|+..+... ..........|...|++
T Consensus 42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~----------------------~~~~~~~~~~~~~~V~~ 99 (357)
T 4g56_B 42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP----------------------NESLCTAGVQTEAGVTD 99 (357)
T ss_dssp CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC-------------------------CGGGCSEEEECSSCEEE
T ss_pred cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc----------------------ceeEecccCCCCCCEEE
Confidence 4569999999998 44 4554 67899998876210 00111122238889999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCCCCeeE----EEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEE
Q psy4876 341 VAWIQEGYMLGVGTSLGTVQLWDVSAKKKC----RTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALL 414 (609)
Q Consensus 341 v~~spdg~~Lasgs~dg~I~iwd~~~~~~~----~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~ 414 (609)
++|+|++.+| +++.||.|+|||+.+++.. ....+|...|.+++| ++.+|++|+.||.|++||+.++ ..+..+
T Consensus 100 ~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~-~~~~~~ 177 (357)
T 4g56_B 100 VAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-AVLKSY 177 (357)
T ss_dssp EEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT-EEEEEE
T ss_pred EEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-cEEEEE
Confidence 9999998655 5788999999999887644 344589999999999 5789999999999999999987 578889
Q ss_pred ccCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeE
Q psy4876 415 QNHTQEVCGLKWSPDGR-YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHI 493 (609)
Q Consensus 415 ~~h~~~V~~l~~spdg~-~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I 493 (609)
.+|...|.+++|++++. ++++++.|+.|++||+++++. .....+..|...+.+++|+|++..++++|+ .|+.|
T Consensus 178 ~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~----~~~~~~~~~~~~v~~v~~sp~~~~~la~g~--~d~~i 251 (357)
T 4g56_B 178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP----ATRIDFCASDTIPTSVTWHPEKDDTFACGD--ETGNV 251 (357)
T ss_dssp CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC----BCBCCCTTCCSCEEEEEECTTSTTEEEEEE--SSSCE
T ss_pred cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce----eeeeeeccccccccchhhhhcccceEEEee--cccce
Confidence 99999999999999875 789999999999999998732 122234457788999999999888999874 89999
Q ss_pred EEEECCCCceeEEEcCC-CCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeC-CCCEEE
Q psy4876 494 YFWNVSSGACLDSIDTK-SQVCALLWNSDYK-ELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP-DETTVL 570 (609)
Q Consensus 494 ~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~-~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~ 570 (609)
++||+++++++..+..+ ..|.+++|+|++. +|++ |+.|+.|+|||+.+++.+..+ +|.+.|++|+|+| |+.+|+
T Consensus 252 ~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~las--gs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 252 SLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLAS--ISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp EEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEE--EETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEE
T ss_pred eEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEE--EeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEE
Confidence 99999999999998765 5899999999985 5666 448999999999998877654 8999999999998 899999
Q ss_pred EEECCCCEEEEEcCCCccc
Q psy4876 571 SAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 571 s~s~Dg~I~iWdl~~~~~~ 589 (609)
+++.||+|++|++....+.
T Consensus 329 s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 329 TVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp EEETTSCEEEEECC-----
T ss_pred EEcCCCeEEEEECCCCCcc
Confidence 9999999999999765443
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=311.27 Aligned_cols=277 Identities=24% Similarity=0.422 Sum_probs=240.2
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|++++|+|++ +++++.|+.|+||++.+ +... ..+. |...|.+++|+|
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~-------------------------~~~~--~~~~~h~~~v~~~~~~~ 75 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-------------------------GKFE--KTISGHKLGISDVAWSS 75 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------------------------CCEE--EEECCCSSCEEEEEECT
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC-------------------------cccc--hhhccCCCceEEEEEcC
Confidence 3468999999986 67788999999999987 4433 3344 889999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
++++|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++|+.||.|++||++++ ..+..+..|...|.+
T Consensus 76 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~ 154 (312)
T 4ery_A 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSA 154 (312)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEE
T ss_pred CCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-EEEEEecCCCCcEEE
Confidence 9999999999999999999999999999999999999999 4789999999999999999987 477888999999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA 502 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~ 502 (609)
++|+|++++|++|+.||.|++||++++ +.+..+ ..+...+..++|+|++.. +++++ .|+.|++||+.+++
T Consensus 155 ~~~~~~~~~l~~~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~--~d~~i~iwd~~~~~ 225 (312)
T 4ery_A 155 VHFNRDGSLIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKY-ILAAT--LDNTLKLWDYSKGK 225 (312)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTC------CEEEEECCSSCCCEEEEEECTTSSE-EEEEE--TTTEEEEEETTTTE
T ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCC------ceeeEEeccCCCceEEEEECCCCCE-EEEEc--CCCeEEEEECCCCc
Confidence 999999999999999999999999987 455544 456678999999999864 45543 79999999999999
Q ss_pred eeEEEcCCC-C---eEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEE--CCC
Q psy4876 503 CLDSIDTKS-Q---VCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAG--ADE 576 (609)
Q Consensus 503 ~~~~~~~~~-~---v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s--~Dg 576 (609)
++..+..+. . +......+++.++++ |+.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++ .|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~ 303 (312)
T 4ery_A 226 CLKTYTGHKNEKYCIFANFSVTGGKWIVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 303 (312)
T ss_dssp EEEEECSSCCSSSCCCEEEECSSSCEEEE--CCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTC
T ss_pred EEEEEEecCCceEEEEEEEEeCCCcEEEE--ECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCc
Confidence 998887653 1 233333466777777 66899999999999999999999999999999999999999997 699
Q ss_pred CEEEEEcC
Q psy4876 577 TLRLWKIF 584 (609)
Q Consensus 577 ~I~iWdl~ 584 (609)
+|++|+..
T Consensus 304 ~i~~W~~d 311 (312)
T 4ery_A 304 TIKLWKSD 311 (312)
T ss_dssp CEEEEECC
T ss_pred cEEEecCC
Confidence 99999964
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-37 Score=315.27 Aligned_cols=252 Identities=20% Similarity=0.308 Sum_probs=226.6
Q ss_pred eeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCC
Q psy4876 330 MDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRS 406 (609)
Q Consensus 330 ~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~ 406 (609)
.++. |.+.|.+++|+|++.+|++|+.||.|+|||+.++..+..+..|...|.+++| ++++|++|+.|+.|++||+.+
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~ 86 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 3455 8999999999999999999999999999999999999999999999999999 679999999999999999998
Q ss_pred CCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 407 RDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 407 ~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
+ ..+..+.+|...|.+++|+|++.+|++|+.|++|++||++++. .....+.+|...|.+++|+|.+..++++|+
T Consensus 87 ~-~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-----~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 87 G-EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-----ALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp C-CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-----EEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred C-cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-----chhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 7 4778899999999999999999999999999999999998762 355678899999999999997667888875
Q ss_pred ccCCCeEEEEECCCCceeEEEcC--CCCeEEEEEcC--CCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEE
Q psy4876 487 GTADRHIYFWNVSSGACLDSIDT--KSQVCALLWNS--DYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAM 562 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t~~~~~~~~~--~~~v~sl~~s~--~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~ 562 (609)
.|+.|++||+.++.....+.. ...+..+.|++ ++.+|++ |+.|+.|+|||+.+++++..+.+|...|.+++|
T Consensus 161 --~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~ 236 (304)
T 2ynn_A 161 --LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT--ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236 (304)
T ss_dssp --TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEE--EETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred --CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEE--EcCCCeEEEEeCCCCccceeeCCCCCCEEEEEE
Confidence 899999999998877666643 35788999987 6678887 458999999999999999999999999999999
Q ss_pred eCCCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 563 SPDETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 563 spdg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
+|++.+|++|+.||+|+|||+.+....+.
T Consensus 237 ~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~ 265 (304)
T 2ynn_A 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKT 265 (304)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCceeee
Confidence 99999999999999999999988775544
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=323.57 Aligned_cols=297 Identities=20% Similarity=0.328 Sum_probs=234.9
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
...|++++|+|++ +|+.+.++.++||++.++.... .+....... .+...........+...|.+++|+|+|
T Consensus 64 ~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~---~l~~~~~~~-----~~~~~~~~~~~~~~~~~v~~v~~s~dg 135 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVA---RLSDDSAAN-----KDPENLNTSSSPSSDLYIRSVCFSPDG 135 (393)
T ss_dssp SSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEE---EECC----------------------CCCCBEEEEEECTTS
T ss_pred CCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEE---EecCccccc-----cccccccccccCCCceeEEEEEECCCC
Confidence 3458899999997 7777889999999998732110 000000000 000000000000134469999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
++||+|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++++.|++|++||++++. ....+. +...+.+++
T Consensus 136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-~~~~~~-~~~~v~~~~ 213 (393)
T 1erj_A 136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-CSLTLS-IEDGVTTVA 213 (393)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEEE-CSSCEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-eEEEEE-cCCCcEEEE
Confidence 99999999999999999999999999999999999999 57899999999999999999873 444444 667899999
Q ss_pred Ecc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-------cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEE
Q psy4876 426 WSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-------SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWN 497 (609)
Q Consensus 426 ~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-------~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd 497 (609)
|+| ++++|++|+.|+.|++||++++ ..+..+ .+|...|.+++|+|++. ++++|+ .|+.|++||
T Consensus 214 ~~~~~~~~l~~~s~d~~v~iwd~~~~------~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s--~d~~v~~wd 284 (393)
T 1erj_A 214 VSPGDGKYIAAGSLDRAVRVWDSETG------FLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGS--LDRSVKLWN 284 (393)
T ss_dssp ECSTTCCEEEEEETTSCEEEEETTTC------CEEEEEC------CCCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEE
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCC------cEEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEe--CCCEEEEEE
Confidence 999 9999999999999999999987 444444 57999999999999985 566663 899999999
Q ss_pred CCCC------------ceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeC
Q psy4876 498 VSSG------------ACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP 564 (609)
Q Consensus 498 ~~t~------------~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp 564 (609)
+++. .+...+..+ ..|.+++|++++.+|++ |+.|+.|++||..+++.+..+.+|...|.+++|++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s--gs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS--GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp C---------------CEEEEEECCSSCEEEEEECGGGCEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred CCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEE--EeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecC
Confidence 9763 344455444 57999999999999998 45899999999999999999999999999999986
Q ss_pred ------CCCEEEEEECCCCEEEEEcCCC
Q psy4876 565 ------DETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 565 ------dg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
++.+|++|+.||+|+||++...
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CcCcCCCCCEEEEECCCCcEEECccccc
Confidence 6889999999999999998653
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-37 Score=318.33 Aligned_cols=282 Identities=21% Similarity=0.306 Sum_probs=225.2
Q ss_pred eeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeee--c-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL--E-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~-h~~~V~~v~~spd 346 (609)
-.|.+++|+++-+++++.|+.|+|||+.. +....+..+ . |...|.+++|+|+
T Consensus 15 ~~v~~~~~s~~~las~~~D~~i~lw~~~~-------------------------~~~~~~~~~~~~~h~~~v~~v~~sp~ 69 (330)
T 2hes_X 15 EKIWSFDFSQGILATGSTDRKIKLVSVKY-------------------------DDFTLIDVLDETAHKKAIRSVAWRPH 69 (330)
T ss_dssp SCEEEEEEETTEEEEEESSSCEEEEECSS-------------------------SCCEEEEEECTTCCCSCEEEEEECTT
T ss_pred CceeeeccCCCEEEEEcCCCEEEEEEecC-------------------------CCeEEEEEEecCCccCCEEEEEECCC
Confidence 35889999999667788999999999987 433333333 3 8899999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCC-------CeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCC---eeEEEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSA-------KKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRD---HKVALL 414 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~-------~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~---~~~~~~ 414 (609)
+++||+|+.|+.|+|||+.. .+.+..+.+|...|.+++| ++.+|++|+.|++|++||++... ..+..+
T Consensus 70 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~ 149 (330)
T 2hes_X 70 TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVL 149 (330)
T ss_dssp SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEE
T ss_pred CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEe
Confidence 99999999999999999853 3567889999999999999 57899999999999999995332 456778
Q ss_pred ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCC-cEEEEEeccCCCeE
Q psy4876 415 QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSP-NVLASGGGTADRHI 493 (609)
Q Consensus 415 ~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~llasggGs~Dg~I 493 (609)
.+|...|.+++|+|++.+|++|+.|++|++||...+. ..++..+.+|...|.+++|+|++. .++++|+ .|+.|
T Consensus 150 ~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~D~~v 223 (330)
T 2hes_X 150 QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD----WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS--DDSTV 223 (330)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCSSSSCEEEEEE--TTSCE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC----eeEEEEccCCCCcEEEEEecCCCCeeEEEEEe--CCCeE
Confidence 8999999999999999999999999999999987542 146788899999999999999842 4677764 89999
Q ss_pred EEEECCCC--------ceeEEEc--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc--eEEE-EeCCCC-CEEE
Q psy4876 494 YFWNVSSG--------ACLDSID--TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV--KVAE-LHGHSA-RVLN 559 (609)
Q Consensus 494 ~iwd~~t~--------~~~~~~~--~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~--~~~~-l~~h~~-~V~~ 559 (609)
++||+..+ .+...+. +...|.+++|++++ .|++ ++.|+.|+||+..++. .+.. +.+|.. .|.+
T Consensus 224 ~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s--~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~ 300 (330)
T 2hes_X 224 RVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIAS--VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINV 300 (330)
T ss_dssp EEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEE--EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEE
T ss_pred EEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEE--EeCCCEEEEEEcCCCceEEEeccccccccceEEE
Confidence 99999754 3444443 34589999999665 6666 4489999999988774 3333 357887 8999
Q ss_pred EEEeC--CCCEEEEEECCCCEEEEEcCC
Q psy4876 560 LAMSP--DETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 560 l~~sp--dg~~L~s~s~Dg~I~iWdl~~ 585 (609)
++|+| ++.+|++|+.||+|+||++..
T Consensus 301 v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 301 VKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999 789999999999999999864
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=317.44 Aligned_cols=282 Identities=18% Similarity=0.249 Sum_probs=233.9
Q ss_pred eeEEEEEe-----cC-CC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEE
Q psy4876 270 YYLNLIDW-----SH-FN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCS 340 (609)
Q Consensus 270 ~~v~~l~w-----sp-~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~ 340 (609)
..|++++| ++ ++ +++++.|++|+|||+....... ........+. |...|.+
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~--------------------~~~~~~~~l~~h~~~V~~ 81 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG--------------------YFGIPHKALTGHNHFVSD 81 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS--------------------BSEEEEEEECCCSSCEEE
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc--------------------ccccccchhccCCCceEE
Confidence 46899999 66 54 7779999999999997621100 0123344555 8999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEc---
Q psy4876 341 VAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQ--- 415 (609)
Q Consensus 341 v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~--- 415 (609)
++|+|++.+|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++++.|+.|++||+... ......
T Consensus 82 ~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~ 159 (343)
T 2xzm_R 82 LALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE--CKFSSAEKE 159 (343)
T ss_dssp EEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC--EEEECCTTT
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC--ceeeeeccc
Confidence 999999999999999999999999999999999999999999999 5789999999999999999843 333333
Q ss_pred cCCCCeEEEEEccCC----------CEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEE
Q psy4876 416 NHTQEVCGLKWSPDG----------RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 416 ~h~~~V~~l~~spdg----------~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 485 (609)
.|...|.+++|+|++ .+|++++.|+.|++||.. . .....+.+|...|.+++|+|++. +|++|
T Consensus 160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~------~~~~~~~~h~~~v~~~~~s~~g~-~l~sg 231 (343)
T 2xzm_R 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-F------QIRYTFKAHESNVNHLSISPNGK-YIATG 231 (343)
T ss_dssp SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-T------EEEEEEECCSSCEEEEEECTTSS-EEEEE
T ss_pred CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-C------ceeEEEcCccccceEEEECCCCC-EEEEE
Confidence 788999999999987 799999999999999943 3 56678889999999999999985 66666
Q ss_pred eccCCCeEEEEECC-CCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE--EEe-----------
Q psy4876 486 GGTADRHIYFWNVS-SGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVA--ELH----------- 551 (609)
Q Consensus 486 gGs~Dg~I~iwd~~-t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~--~l~----------- 551 (609)
+ .|+.|++||+. .......+.....|.+++|+|++.++++ | .|+.|++|++.++.... .+.
T Consensus 232 s--~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~--~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (343)
T 2xzm_R 232 G--KDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAV--G-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK 306 (343)
T ss_dssp E--TTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEE--E-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred c--CCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEE--E-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence 4 89999999994 4555666666778999999999988765 3 48889999998765433 443
Q ss_pred CCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 552 GHSARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 552 ~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
+|...|.+++|+|+|++|++|+.||+|++|++.++
T Consensus 307 ~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 68889999999999999999999999999998764
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=309.93 Aligned_cols=285 Identities=22% Similarity=0.335 Sum_probs=246.2
Q ss_pred ceeEEEEEecCC-C--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSHF-N--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp~-~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~s 344 (609)
.-.|++|+|+|+ + +++++.|++|+|||+..... ........+. |...|.+++|+
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~----------------------~~~~~~~~l~~h~~~V~~~~~s 95 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET----------------------NYGIPQRALRGHSHFVSDVVIS 95 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS----------------------CSEEEEEEECCCSSCEEEEEEC
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc----------------------ccceeeEEEeCCCCCEEEEEEC
Confidence 446999999997 3 56689999999999986211 1123444555 89999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
|+|++|++|+.||.|++|+............+...+..+.+ ++.+|++|+.|+.+++||+...........+|...|.
T Consensus 96 ~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~ 175 (340)
T 4aow_A 96 SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVS 175 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEE
T ss_pred CCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCccc
Confidence 99999999999999999999999998888888888888888 5789999999999999999877555566778999999
Q ss_pred EEEEccCC--CEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 423 GLKWSPDG--RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 423 ~l~~spdg--~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
.++|++++ .++++++.|+.|++||++++ +.+..+.+|...|.+++|+|++. +|++|+ .|+.|++||+.+
T Consensus 176 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~------~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s--~Dg~i~iwd~~~ 246 (340)
T 4aow_A 176 CVRFSPNSSNPIIVSCGWDKLVKVWNLANC------KLKTNHIGHTGYLNTVTVSPDGS-LCASGG--KDGQAMLWDLNE 246 (340)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTCEEEEEETTT
T ss_pred ceEEccCCCCcEEEEEcCCCEEEEEECCCC------ceeeEecCCCCcEEEEEECCCCC-EEEEEe--CCCeEEEEEecc
Confidence 99999864 57899999999999999988 78888999999999999999885 666664 899999999999
Q ss_pred CceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe---------CCCCCEEEEEEeCCCCEEEE
Q psy4876 501 GACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH---------GHSARVLNLAMSPDETTVLS 571 (609)
Q Consensus 501 ~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~---------~h~~~V~~l~~spdg~~L~s 571 (609)
++++..+..+..+.++.|+|++.+++.+ .|+.|+|||+..+..+..+. +|...|++++|+|||++|++
T Consensus 247 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 323 (340)
T 4aow_A 247 GKHLYTLDGGDIINALCFSPNRYWLCAA---TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 323 (340)
T ss_dssp TEEEEEEECSSCEEEEEECSSSSEEEEE---ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred CceeeeecCCceEEeeecCCCCceeecc---CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence 9999999999999999999998766543 59999999999887766653 68889999999999999999
Q ss_pred EECCCCEEEEEcCCCc
Q psy4876 572 AGADETLRLWKIFEKV 587 (609)
Q Consensus 572 ~s~Dg~I~iWdl~~~~ 587 (609)
|+.||.|+|||+.++.
T Consensus 324 gs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 324 GYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EETTSCEEEEEEEC--
T ss_pred EeCCCEEEEEeCCCcC
Confidence 9999999999998875
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-36 Score=310.20 Aligned_cols=286 Identities=16% Similarity=0.222 Sum_probs=250.6
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|++++|+|++ +++++.|+.|+|||+.+ +. .+..+. |...|.+++|+|
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-------------------------~~--~~~~~~~h~~~v~~~~~~~ 84 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN-------------------------GE--RLGTLDGHTGTIWSIDVDC 84 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTT-------------------------CC--EEEEECCCSSCEEEEEECT
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-------------------------ch--hhhhhhhcCCcEEEEEEcC
Confidence 3458999999986 66688899999999987 44 344555 899999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecC-----CeEEEEEcCCCCe---------
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRC-----GNIVHHDVRSRDH--------- 409 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~d-----g~I~iwd~~~~~~--------- 409 (609)
++++|++++.||.|++||+.+++.+..+. |...|.+++| ++.+|++++.+ |.|.+||+.....
T Consensus 85 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 163 (369)
T 3zwl_B 85 FTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE 163 (369)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccc
Confidence 99999999999999999999999998888 8899999999 57899999998 9999999986531
Q ss_pred -eEEEEccCCC--CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 410 -KVALLQNHTQ--EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 410 -~~~~~~~h~~--~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
....+..|.. .+.+++|+|++++|++++.||.|++||+++.. ..+..+..|...|.+++|+|++. +|++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 237 (369)
T 3zwl_B 164 EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY-----EYVDSIDLHEKSISDMQFSPDLT-YFITSS 237 (369)
T ss_dssp SCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT-----EEEEEEECCSSCEEEEEECTTSS-EEEEEE
T ss_pred ceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc-----EeEEEEecCCCceeEEEECCCCC-EEEEec
Confidence 3445556666 99999999999999999999999999999831 67888889999999999999885 555553
Q ss_pred ccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCC--------------eEEEEECCCCceEEEEeC
Q psy4876 487 GTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQN--------------QLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg--------------~I~Iwd~~~~~~~~~l~~ 552 (609)
.|+.|++||+.+++.+..+.....+..++|+|+++++++++ .++ .+++||..+++.+..+.+
T Consensus 238 --~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 313 (369)
T 3zwl_B 238 --RDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGG--GQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG 313 (369)
T ss_dssp --TTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEE--CCC-------------CEEEEEETTTCCEEEEEEC
T ss_pred --CCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEee--cCCCceEEEEecCCCcceeEEEecCCCcchhheec
Confidence 79999999999999999999888999999999999999965 455 899999999999999999
Q ss_pred CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhh
Q psy4876 553 HSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKK 592 (609)
Q Consensus 553 h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~ 592 (609)
|...|.+++|+|++++|++++.||.|+||++..+....+.
T Consensus 314 ~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 314 HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence 9999999999999999999999999999999876544433
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=333.43 Aligned_cols=286 Identities=16% Similarity=0.249 Sum_probs=234.1
Q ss_pred ceeEEEEEecCCC---eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSHFN---VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp~~---lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~s 344 (609)
...|++++|+|++ +++++.|++|++||..+ ++ .+..+. |...|.+++|+
T Consensus 147 ~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~-------------------------~~--~~~~l~~H~~~V~~v~fs 199 (611)
T 1nr0_A 147 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-------------------------FK--FKSTFGEHTKFVHSVRYN 199 (611)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-------------------------BE--EEEEECCCSSCEEEEEEC
T ss_pred CCCceEEEECCCCCeEEEEEeCCCeEEEEECCC-------------------------Ce--EeeeeccccCceEEEEEC
Confidence 3468999999985 67799999999999876 43 344555 99999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeEEEec-------CCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe------
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKKCRTMD-------GHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDH------ 409 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~-------~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~------ 409 (609)
|+|++||+|+.||.|+|||+.+++.+..+. +|...|.+++| ++.+|++++.|++|++||+.++..
T Consensus 200 pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~ 279 (611)
T 1nr0_A 200 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV 279 (611)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecC
Confidence 999999999999999999999999988884 79999999999 578999999999999999986531
Q ss_pred ------------------------------------eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q psy4876 410 ------------------------------------KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHT 453 (609)
Q Consensus 410 ------------------------------------~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~ 453 (609)
....+.+|...|.+++|+|+|++|++++.|+.|++||+.++...
T Consensus 280 ~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 280 GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN 359 (611)
T ss_dssp CSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Confidence 12345689999999999999999999999999999999865321
Q ss_pred CCc-----cc----------------------------------------------------------------------
Q psy4876 454 FST-----QP---------------------------------------------------------------------- 458 (609)
Q Consensus 454 ~~~-----~~---------------------------------------------------------------------- 458 (609)
... ..
T Consensus 360 ~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~ 439 (611)
T 1nr0_A 360 RVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 439 (611)
T ss_dssp ECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEET
T ss_pred eecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeC
Confidence 000 00
Q ss_pred --eEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce--eEEEcCCCCeEEEEEcCCCCeEEEEEecCCC
Q psy4876 459 --IHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC--LDSIDTKSQVCALLWNSDYKELVSAHGFAQN 534 (609)
Q Consensus 459 --~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~--~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg 534 (609)
+..+ .|...+.+++|+|++. ++++|+ .|+.|++||+.++.. +....+...|.+++|+|+|++|+++ ..|+
T Consensus 440 ~~~~~~-~~~~~v~~va~spdg~-~lasgs--~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~--s~d~ 513 (611)
T 1nr0_A 440 GKLTEV-PISYNSSCVALSNDKQ-FVAVGG--QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT--DQSR 513 (611)
T ss_dssp TEEEEE-ECSSCEEEEEECTTSC-EEEEEE--TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEE--ETTS
T ss_pred Cceeee-ecCCCceEEEEeCCCC-EEEEeC--CCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEE--cCCC
Confidence 0000 1345678999999985 667764 899999999987654 3444566789999999999999985 4899
Q ss_pred eEEEEECCC-CceEEE--EeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 535 QLIIWKYPS-LVKVAE--LHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 535 ~I~Iwd~~~-~~~~~~--l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
.|++|++.+ ++.+.. +.+|...|++++|+|||++|++|+.|++|+||++..+.
T Consensus 514 ~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 514 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp CEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred CEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 999999987 555443 33499999999999999999999999999999998755
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-36 Score=318.63 Aligned_cols=245 Identities=20% Similarity=0.338 Sum_probs=226.1
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
|.+.|++++|+|++.+|++|+.||.|+|||+.+++....+.+|...|.+++| ++.+|++|+.||+|++||+.+. ..+
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~-~~~ 185 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF-ECI 185 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS-CEE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-cee
Confidence 8999999999999999999999999999999999999999999999999999 4789999999999999999886 477
Q ss_pred EEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 412 ALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
..+.+|...|.+++|+|++.+|++|+.|+.|++||++++ .++..+.+|...|.+++|+|++. ++++|+ .|+
T Consensus 186 ~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~------~~~~~~~~h~~~v~~~~~~~~g~-~l~s~s--~D~ 256 (410)
T 1vyh_C 186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG------YCVKTFTGHREWVRMVRPNQDGT-LIASCS--NDQ 256 (410)
T ss_dssp ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTS
T ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC------cEEEEEeCCCccEEEEEECCCCC-EEEEEc--CCC
Confidence 888999999999999999999999999999999999988 78889999999999999999884 666664 899
Q ss_pred eEEEEECCCCceeEEEcCC-CCeEEEEEcCC--------------------CCeEEEEEecCCCeEEEEECCCCceEEEE
Q psy4876 492 HIYFWNVSSGACLDSIDTK-SQVCALLWNSD--------------------YKELVSAHGFAQNQLIIWKYPSLVKVAEL 550 (609)
Q Consensus 492 ~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~--------------------g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l 550 (609)
.|++||+.++++...+..+ ..|.+++|+|+ +.++++ |+.|+.|++||+.++.++..+
T Consensus 257 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s--gs~D~~i~iwd~~~~~~~~~~ 334 (410)
T 1vyh_C 257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS--GSRDKTIKMWDVSTGMCLMTL 334 (410)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE--EETTSEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE--EeCCCeEEEEECCCCceEEEE
Confidence 9999999999999888765 58999999997 556777 558999999999999999999
Q ss_pred eCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 551 HGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 551 ~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
.+|...|.+++|+|+|.+|++|+.|++|++||+.++....
T Consensus 335 ~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~ 374 (410)
T 1vyh_C 335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 374 (410)
T ss_dssp ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE
T ss_pred ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 9999999999999999999999999999999998766443
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=335.66 Aligned_cols=281 Identities=24% Similarity=0.326 Sum_probs=239.8
Q ss_pred ceeEEEEEecCCC---eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSHFN---VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp~~---lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~s 344 (609)
...|++|+|++++ +++++.|++|+||++..... ........+. |...|.+++|+
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~----------------------~~~~~~~~~~~h~~~v~~v~~s 439 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK----------------------AYGVAQRRLTGHSHFVEDVVLS 439 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT----------------------CSCEEEEEEECCSSCEEEEEEC
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc----------------------ccccccceecCCCCcEEEEEEC
Confidence 3459999999864 66799999999999976210 0112233444 99999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEE---ccCCC
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALL---QNHTQ 419 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~---~~h~~ 419 (609)
|+|++|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++|+.|++|++||+.... ..... .+|..
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~~~h~~ 518 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC-KYTISEGGEGHRD 518 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-EEEECSSTTSCSS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc-ceeeccCCCCCCC
Confidence 99999999999999999999999999999999999999999 57899999999999999987542 22222 46889
Q ss_pred CeEEEEEccCC--CEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEE
Q psy4876 420 EVCGLKWSPDG--RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWN 497 (609)
Q Consensus 420 ~V~~l~~spdg--~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd 497 (609)
.|.+++|+|++ ..|++|+.|+.|++||++.+ +....+.+|...|.+++|+|++. ++++|+ .|+.|++||
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~------~~~~~~~~h~~~v~~v~~spdg~-~l~sg~--~Dg~i~iwd 589 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC------KLRSTLAGHTGYVSTVAVSPDGS-LCASGG--KDGVVLLWD 589 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSBCEEEE
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC------cEEEEEcCCCCCEEEEEEeCCCC-EEEEEe--CCCeEEEEE
Confidence 99999999986 58999999999999999987 67888999999999999999884 666764 899999999
Q ss_pred CCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCC-------------------CCEE
Q psy4876 498 VSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHS-------------------ARVL 558 (609)
Q Consensus 498 ~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~-------------------~~V~ 558 (609)
+.+++++..+..+..+.+++|+|++.+++++ .++.|+|||+.++..+..+..+. ..++
T Consensus 590 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (694)
T 3dm0_A 590 LAEGKKLYSLEANSVIHALCFSPNRYWLCAA---TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCT 666 (694)
T ss_dssp TTTTEEEECCBCSSCEEEEEECSSSSEEEEE---ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEE
T ss_pred CCCCceEEEecCCCcEEEEEEcCCCcEEEEE---cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEee
Confidence 9999999988888899999999999888774 36779999999998887775432 2378
Q ss_pred EEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 559 NLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 559 ~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
+++|+|||++|++|+.||+|+||++.
T Consensus 667 ~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 667 SLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 99999999999999999999999985
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=313.81 Aligned_cols=284 Identities=15% Similarity=0.204 Sum_probs=243.7
Q ss_pred ceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC-
Q psy4876 269 DYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE- 346 (609)
Q Consensus 269 ~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd- 346 (609)
...|++|+|+|+.+++++.||.|+|||+.+.... .....+..+. |...|.+++|+|+
T Consensus 16 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~---------------------~~~~~~~~~~~h~~~v~~~~~~~~~ 74 (397)
T 1sq9_A 16 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNE---------------------NPKDKSYSHFVHKSGLHHVDVLQAI 74 (397)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEESBCCTTC---------------------CGGGGEEEEECCTTCEEEEEEEEEE
T ss_pred hcCeEEEEecCCeEEEEcCCCEEEEEECCCcccc---------------------cCCCcceEEecCCCcEEEEEEeccc
Confidence 3468999999965788999999999999872100 0122334444 8999999999999
Q ss_pred ---C---CEEEEEeCCCeEEEEeCCCCee-----EEEecCC-----CCceEEEEec------CCE-EEEEecCCeEEEEE
Q psy4876 347 ---G---YMLGVGTSLGTVQLWDVSAKKK-----CRTMDGH-----DVRVGALAWN------TYI-LSSGSRCGNIVHHD 403 (609)
Q Consensus 347 ---g---~~Lasgs~dg~I~iwd~~~~~~-----~~~l~~h-----~~~V~~l~~~------~~~-L~sgs~dg~I~iwd 403 (609)
+ ++|++++.||.|++||+.+++. +..+..| ...|.+++|+ +.+ |++++.||.|++||
T Consensus 75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 154 (397)
T 1sq9_A 75 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 154 (397)
T ss_dssp ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEe
Confidence 9 9999999999999999998887 8889988 5999999998 578 99999999999999
Q ss_pred cCC------CCeeEE-----EE-------ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-
Q psy4876 404 VRS------RDHKVA-----LL-------QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR- 464 (609)
Q Consensus 404 ~~~------~~~~~~-----~~-------~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~- 464 (609)
+.. .. .+. .+ ..|...|.+++|+|++ +|++|+.|+.|++||++++ +.+..+..
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~------~~~~~~~~~ 226 (397)
T 1sq9_A 155 FHPFADESNSL-TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL------RPLYNFESQ 226 (397)
T ss_dssp EESSSSHHHHT-TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT------EEEEEEECC
T ss_pred CCccccccccc-eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC------ceeEEEecc
Confidence 987 43 233 45 4588999999999999 9999999999999999987 77888888
Q ss_pred --C---cccEEEEEEcCCCCcEEEEEeccCC---CeEEEEECCCCceeEEEcC--------------CCCeEEEEEcCCC
Q psy4876 465 --H---QAAVKAIAWCPWSPNVLASGGGTAD---RHIYFWNVSSGACLDSIDT--------------KSQVCALLWNSDY 522 (609)
Q Consensus 465 --h---~~~V~~l~~sp~~~~llasggGs~D---g~I~iwd~~t~~~~~~~~~--------------~~~v~sl~~s~~g 522 (609)
| ...|.+++|+|++. +|++++ .| +.|++||+.+++++..+.. ...|.+++|+|++
T Consensus 227 ~~h~~~~~~i~~i~~~~~~~-~l~~~~--~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 303 (397)
T 1sq9_A 227 HSMINNSNSIRSVKFSPQGS-LLAIAH--DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 303 (397)
T ss_dssp C---CCCCCEEEEEECSSTT-EEEEEE--EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred ccccccCCccceEEECCCCC-EEEEEe--cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCC
Confidence 8 99999999999985 555553 68 9999999999999998875 4689999999999
Q ss_pred CeEEEEEecCCCeEEEEECCCCceEEEEe------CC---------------CCCEEEEEEeCCC----------CEEEE
Q psy4876 523 KELVSAHGFAQNQLIIWKYPSLVKVAELH------GH---------------SARVLNLAMSPDE----------TTVLS 571 (609)
Q Consensus 523 ~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~------~h---------------~~~V~~l~~spdg----------~~L~s 571 (609)
++|+++ +.|+.|+|||+.+++.+..+. +| ...|.+++|+|+| .+|++
T Consensus 304 ~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s 381 (397)
T 1sq9_A 304 ETLCSA--GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCC 381 (397)
T ss_dssp SEEEEE--ETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEE
T ss_pred CEEEEE--eCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEE
Confidence 999984 489999999999999999999 88 9999999999998 79999
Q ss_pred EECCCCEEEEEcCCC
Q psy4876 572 AGADETLRLWKIFEK 586 (609)
Q Consensus 572 ~s~Dg~I~iWdl~~~ 586 (609)
++.||.|+||++.++
T Consensus 382 ~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 382 VCLDRSIRWFREAGG 396 (397)
T ss_dssp EETTTEEEEEEEEC-
T ss_pred ecCCCcEEEEEcCCC
Confidence 999999999999765
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=297.01 Aligned_cols=281 Identities=21% Similarity=0.287 Sum_probs=238.5
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
...|.+++|+|++ +++++.|+.|++||+.+.... .....+....|...|.+++|+|++
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~---------------------~~~~~~~~~~~~~~v~~~~~~~~~ 109 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNK---------------------SPVSQLDCLNRDNYIRSCKLLPDG 109 (337)
T ss_dssp SSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCC---------------------SCSEEEECSCTTSBEEEEEECTTS
T ss_pred CCceEEEEEecCCcEEEEcCCCeEEEEECCCCCce---------------------eeeecccccCCCCcEEEEEEcCCC
Confidence 3458899999986 666666999999999872110 111222222388999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCe--eEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKK--KCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
++|++++.||.|++||+.+++ ....+..|...|.+++| ++.+|++++.||.|++||+++. ..+..+..|...|.+
T Consensus 110 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~ 188 (337)
T 1gxr_A 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASC 188 (337)
T ss_dssp SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEE
T ss_pred CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceeeeeecccCceEE
Confidence 999999999999999999876 67778889999999999 5789999999999999999986 577888899999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC 503 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~ 503 (609)
++|+|++++|++++.|+.|++||++++ +.+..+ .+...+.+++|+|++. +++++ +.|+.|++||+.+++.
T Consensus 189 ~~~~~~~~~l~~~~~dg~i~~~d~~~~------~~~~~~-~~~~~v~~~~~s~~~~-~l~~~--~~~~~i~~~~~~~~~~ 258 (337)
T 1gxr_A 189 IDISNDGTKLWTGGLDNTVRSWDLREG------RQLQQH-DFTSQIFSLGYCPTGE-WLAVG--MESSNVEVLHVNKPDK 258 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTT------EEEEEE-ECSSCEEEEEECTTSS-EEEEE--ETTSCEEEEETTSSCE
T ss_pred EEECCCCCEEEEEecCCcEEEEECCCC------ceEeee-cCCCceEEEEECCCCC-EEEEE--cCCCcEEEEECCCCCe
Confidence 999999999999999999999999987 555555 4778899999999985 45555 3799999999999887
Q ss_pred eEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEc
Q psy4876 504 LDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKI 583 (609)
Q Consensus 504 ~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl 583 (609)
.....+...+.+++|+|++++++++ ..||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++|++
T Consensus 259 ~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 259 YQLHLHESCVLSLKFAYCGKWFVST--GKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEE--ETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEcCCccceeEEEECCCCCEEEEe--cCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 6655566799999999999999884 48999999999999888554 58899999999999999999999999999997
Q ss_pred C
Q psy4876 584 F 584 (609)
Q Consensus 584 ~ 584 (609)
.
T Consensus 336 ~ 336 (337)
T 1gxr_A 336 I 336 (337)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=329.57 Aligned_cols=278 Identities=21% Similarity=0.311 Sum_probs=238.7
Q ss_pred eeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
..|++++|+|++ +++++.|++|+|||+.+ +.......+. |.+.|.+++|+|+
T Consensus 60 ~~v~~~~~spdg~~lasg~~d~~v~lWd~~~-------------------------~~~~~~~~~~~~~~~v~~v~fs~d 114 (611)
T 1nr0_A 60 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ-------------------------TTHILKTTIPVFSGPVKDISWDSE 114 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEESSS-------------------------TTCCEEEEEECSSSCEEEEEECTT
T ss_pred CceEEEEECCCCcEEEEEeCCCCEEEeECCC-------------------------CcceeeEeecccCCceEEEEECCC
Confidence 358999999997 56688899999999976 4443444555 8899999999999
Q ss_pred CCEEEEEeCC----CeEEEEeCCCCeeEEEecCCCCceEEEEecC---CEEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 347 GYMLGVGTSL----GTVQLWDVSAKKKCRTMDGHDVRVGALAWNT---YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 347 g~~Lasgs~d----g~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~---~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
|++|++++.+ +.|++|| .++....+.+|...|.+++|++ ..|++|+.|++|++||.... .....+.+|..
T Consensus 115 g~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-~~~~~l~~H~~ 191 (611)
T 1nr0_A 115 SKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-KFKSTFGEHTK 191 (611)
T ss_dssp SCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-EEEEEECCCSS
T ss_pred CCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-eEeeeeccccC
Confidence 9999998865 4788887 4567778899999999999953 37999999999999998875 57788999999
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec-------CCcccEEEEEEcCCCCcEEEEEeccCCCe
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS-------RHQAAVKAIAWCPWSPNVLASGGGTADRH 492 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~llasggGs~Dg~ 492 (609)
.|.+++|+|+|++||+|+.|++|++||+.++ +.+..+. +|.+.|.+++|+|++. +|++++ .|++
T Consensus 192 ~V~~v~fspdg~~las~s~D~~i~lwd~~~g------~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s--~D~~ 262 (611)
T 1nr0_A 192 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDG------TKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASAS--ADKT 262 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTC------CEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEE--TTSE
T ss_pred ceEEEEECCCCCEEEEEECCCcEEEEECCCC------cEeeeeccccccccccCCCEEEEEECCCCC-EEEEEe--CCCe
Confidence 9999999999999999999999999999887 5555553 7999999999999985 566664 8999
Q ss_pred EEEEECCCCceeEEEcCC----CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCE
Q psy4876 493 IYFWNVSSGACLDSIDTK----SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETT 568 (609)
Q Consensus 493 I~iwd~~t~~~~~~~~~~----~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~ 568 (609)
|++||+.+++++..+..+ ..+..+.| ++..++++ ..|+.|++|+...+.....+.+|...|++++|+|||++
T Consensus 263 v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~--s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~ 338 (611)
T 1nr0_A 263 IKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSI--SANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT 338 (611)
T ss_dssp EEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEE--ETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEE--eCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE
Confidence 999999999999888654 24566677 67778774 48999999999999888889999999999999999999
Q ss_pred EEEEECCCCEEEEEcCCCcc
Q psy4876 569 VLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 569 L~s~s~Dg~I~iWdl~~~~~ 588 (609)
|++++.|++|++||+.++..
T Consensus 339 l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 339 LFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp EEEEETTSCEEEEETTTCCE
T ss_pred EEEEeCCCcEEEEECCCCce
Confidence 99999999999999987654
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-35 Score=323.39 Aligned_cols=268 Identities=25% Similarity=0.465 Sum_probs=237.6
Q ss_pred eeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
..|.+++|+|++ +++++.|+.|++||... ... ..+. |...|.+++|+|+
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-------------------------~~~---~~~~~~~~~v~~~~~s~~ 355 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNG-------------------------QHL---QTLTGHSSSVWGVAFSPD 355 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTS-------------------------CEE---EEECCCSSCEEEEEECTT
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-------------------------Cee---EEEeCCCCCEEEEEECCC
Confidence 358899999986 66788899999999876 332 2334 8899999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGL 424 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 424 (609)
|++|++|+.||.|++||. +++.+..+.+|...|.+++| ++.+|++++.|+.|++||... ..+..+.+|...|.++
T Consensus 356 g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~--~~~~~~~~~~~~v~~~ 432 (577)
T 2ymu_A 356 GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGV 432 (577)
T ss_dssp SSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC--CEEEEEECCSSCEEEE
T ss_pred CCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC--CEEEEecCCCCCeEEE
Confidence 999999999999999995 56888899999999999999 578999999999999999653 4678889999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee
Q psy4876 425 KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504 (609)
Q Consensus 425 ~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~ 504 (609)
+|+||+++|++++.|+.|++||.. + +.+..+.+|...|.+++|+|++. +|++++ .|+.|++||. +++++
T Consensus 433 ~~s~d~~~l~~~~~d~~v~~w~~~-~------~~~~~~~~~~~~v~~~~~spd~~-~las~~--~d~~i~iw~~-~~~~~ 501 (577)
T 2ymu_A 433 AFSPDDQTIASASDDKTVKLWNRN-G------QLLQTLTGHSSSVRGVAFSPDGQ-TIASAS--DDKTVKLWNR-NGQLL 501 (577)
T ss_dssp EECTTSSEEEEEETTSEEEEEETT-S------CEEEEEECCSSCEEEEEECTTSC-EEEEEE--TTSEEEEEET-TSCEE
T ss_pred EECCCCCEEEEEcCCCEEEEEECC-C------CEEEEEcCCCCCEEEEEEcCCCC-EEEEEe--CCCEEEEEcC-CCCEE
Confidence 999999999999999999999964 3 57788889999999999999985 566653 8999999995 67888
Q ss_pred EEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEE
Q psy4876 505 DSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWK 582 (609)
Q Consensus 505 ~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWd 582 (609)
..+..+ ..|.+++|+|++++|+++ +.|+.|+|||+ +++.+..+.+|.+.|++++|+|||++|+|++.|++|++||
T Consensus 502 ~~~~~h~~~v~~l~~s~dg~~l~s~--~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 502 QTLTGHSSSVRGVAFSPDGQTIASA--SDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEE--ETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEeCCCCCEEEEEEcCCCCEEEEE--ECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 888765 589999999999999984 48999999996 6788999999999999999999999999999999999997
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=293.54 Aligned_cols=280 Identities=18% Similarity=0.198 Sum_probs=238.9
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|++++| +++ +++++.||.|++||+.+ +.... .+. |...|.+++|+|
T Consensus 18 ~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~-------------------------~~~~~--~~~~~~~~v~~~~~~~ 69 (313)
T 3odt_A 18 DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD-------------------------QWLGT--VVYTGQGFLNSVCYDS 69 (313)
T ss_dssp SSCEEEEEE-EETTEEEEEETTSEEEEEEESS-------------------------SEEEE--EEEECSSCEEEEEEET
T ss_pred CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC-------------------------CEEEE--EeecCCccEEEEEECC
Confidence 345889999 654 77788999999999976 44332 333 889999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC---eeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAK---KKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~---~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
++++|++|+.||.|++|++... +.+..+.+|...|.+++|++.+|++++.||.|++|| . ......+..|...|.
T Consensus 70 ~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~-~~~~~~~~~~~~~v~ 146 (313)
T 3odt_A 70 EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--E-GSLVYNLQAHNASVW 146 (313)
T ss_dssp TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--T-TEEEEEEECCSSCEE
T ss_pred CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--C-CcEEEecccCCCcee
Confidence 9999999999999999998754 667888999999999999999999999999999999 3 357788889999999
Q ss_pred EEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 423 GLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 423 ~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
+++|+| ++.+|++++.|+.|++||.. .....+.. |...|.+++|+|++. +++++ .|+.|++||+++
T Consensus 147 ~~~~~~~~~~~l~~~~~d~~i~i~d~~--------~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~--~dg~i~i~d~~~ 214 (313)
T 3odt_A 147 DAKVVSFSENKFLTASADKTIKLWQND--------KVIKTFSGIHNDVVRHLAVVDDGH--FISCS--NDGLIKLVDMHT 214 (313)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETT--------EEEEEECSSCSSCEEEEEEEETTE--EEEEE--TTSEEEEEETTT
T ss_pred EEEEccCCCCEEEEEECCCCEEEEecC--------ceEEEEeccCcccEEEEEEcCCCe--EEEcc--CCCeEEEEECCc
Confidence 999998 99999999999999999943 45666666 899999999999885 55553 899999999999
Q ss_pred CceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEE
Q psy4876 501 GACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLR 579 (609)
Q Consensus 501 ~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~ 579 (609)
++++..+..+ ..+.+++|+|++ .+++ +..|+.|++||+.+++.+..+..|...|.+++|+|+++ +++++.||.|+
T Consensus 215 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~ 290 (313)
T 3odt_A 215 GDVLRTYEGHESFVYCIKLLPNG-DIVS--CGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVR 290 (313)
T ss_dssp CCEEEEEECCSSCEEEEEECTTS-CEEE--EETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEE
T ss_pred hhhhhhhhcCCceEEEEEEecCC-CEEE--EecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEE
Confidence 9999998754 589999999999 5666 44899999999999999999999999999999999998 66799999999
Q ss_pred EEEcCCCccchhhhhh
Q psy4876 580 LWKIFEKVKSKKKEIK 595 (609)
Q Consensus 580 iWdl~~~~~~~k~~~~ 595 (609)
+|++.++......+.+
T Consensus 291 iw~~~~~~~~~~~~~~ 306 (313)
T 3odt_A 291 IFSQEKSRWASEDEIK 306 (313)
T ss_dssp EEESCGGGCCC-----
T ss_pred EEeCCCCceeehhhhh
Confidence 9999987766655543
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=319.58 Aligned_cols=285 Identities=17% Similarity=0.362 Sum_probs=245.1
Q ss_pred eEEEEEecCCC--eEEE-----------EcCCeEEEEeCCCCCCCceEEecCCccccccccccccccce-eeeeeecCCC
Q psy4876 271 YLNLIDWSHFN--VLAV-----------ALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAI-DHLMDLEGNE 336 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~-----------s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~h~~ 336 (609)
.+.+++|+|++ ++++ +.|+.|+|||+.+ +.. ..+..+.|..
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~-------------------------~~~~~~~~~~~~~~ 68 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLA-------------------------ADSEKPIASLQVDS 68 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSS-------------------------GGGCSCSCCCCCSS
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccC-------------------------CCCCcEEEEEecCC
Confidence 47789999985 5554 4789999999987 332 2344445889
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEeCCC----CeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCC-
Q psy4876 337 NVCSVAWIQEGYMLGVGTSLGTVQLWDVSA----KKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRD- 408 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~dg~I~iwd~~~----~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~- 408 (609)
.|.+++|+|++.+|++|+.||.|+|||+.+ .+.+..+.+|...|.+++|+ +.+|++++.||.|++||+.+..
T Consensus 69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 148 (416)
T 2pm9_A 69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTE 148 (416)
T ss_dssp CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSS
T ss_pred ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcc
Confidence 999999999999999999999999999987 45888999999999999994 6899999999999999998864
Q ss_pred -----eeE--EEEccCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC------cccEEEEEE
Q psy4876 409 -----HKV--ALLQNHTQEVCGLKWSPD-GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH------QAAVKAIAW 474 (609)
Q Consensus 409 -----~~~--~~~~~h~~~V~~l~~spd-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h------~~~V~~l~~ 474 (609)
... .....|...|.+++|+|+ +.+|++++.|+.|++||++++ +.+..+..+ ...|.+++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~~~~~~~v~~~~~ 222 (416)
T 2pm9_A 149 SPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK------KEVIHLSYTSPNSGIKQQLSVVEW 222 (416)
T ss_dssp CTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT------EEEEEECCCCCSSCCCCCEEEEEE
T ss_pred ccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC------CcceEEeccccccccCCceEEEEE
Confidence 221 234679999999999998 789999999999999999987 667777665 789999999
Q ss_pred cCCCCcEEEEEeccCCC---eEEEEECCCC-ceeEEEc--CCCCeEEEEEcC-CCCeEEEEEecCCCeEEEEECCCCceE
Q psy4876 475 CPWSPNVLASGGGTADR---HIYFWNVSSG-ACLDSID--TKSQVCALLWNS-DYKELVSAHGFAQNQLIIWKYPSLVKV 547 (609)
Q Consensus 475 sp~~~~llasggGs~Dg---~I~iwd~~t~-~~~~~~~--~~~~v~sl~~s~-~g~~l~~~sG~~dg~I~Iwd~~~~~~~ 547 (609)
+|++..++++++ .|+ .|++||++++ .++..+. +...|.+++|+| ++.+|+++ ..|+.|++||+.+++.+
T Consensus 223 ~~~~~~~l~~~~--~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~--~~dg~v~~wd~~~~~~~ 298 (416)
T 2pm9_A 223 HPKNSTRVATAT--GSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSS--GRDNTVLLWNPESAEQL 298 (416)
T ss_dssp CSSCTTEEEEEE--CCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEE--ESSSEEEEECSSSCCEE
T ss_pred CCCCCCEEEEEE--CCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEE--eCCCCEEEeeCCCCccc
Confidence 999888888875 677 9999999986 5666666 446899999999 88898884 48999999999999999
Q ss_pred EEEeCCCCCEEEEEEeCCC-CEEEEEECCCCEEEEEcCCCccch
Q psy4876 548 AELHGHSARVLNLAMSPDE-TTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 548 ~~l~~h~~~V~~l~~spdg-~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
..+.+|...|.+++|+|++ .+|++++.|+.|+||++.......
T Consensus 299 ~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 299 SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 9999999999999999999 899999999999999998876443
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=305.74 Aligned_cols=242 Identities=17% Similarity=0.219 Sum_probs=204.6
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeee--ee-cCCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLM--DL-EGNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~-~h~~~V~~v~~s 344 (609)
+..|++++|+|++ +++++.||.|+|||+.+ ++..... .. .|.+.|++|+|+
T Consensus 82 ~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~-------------------------~~~~~~~~~~~~~H~~~V~~v~~s 136 (344)
T 4gqb_B 82 EAGVADLTWVGERGILVASDSGAVELWELDE-------------------------NETLIVSKFCKYEHDDIVSTVSVL 136 (344)
T ss_dssp SSCEEEEEEETTTEEEEEETTSEEEEEEECT-------------------------TSSCEEEEEEEECCSSCEEEEEEC
T ss_pred CCCEEEEEEeCCCeEEEEECCCEEEEEeccC-------------------------CCceeEeeccccCCCCCEEEEEEC
Confidence 3458999999987 77899999999999988 4332222 22 389999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--C-CEEEEEecCCeEEEEEcCCCCeeEEEE--ccCCC
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--T-YILSSGSRCGNIVHHDVRSRDHKVALL--QNHTQ 419 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~-~~L~sgs~dg~I~iwd~~~~~~~~~~~--~~h~~ 419 (609)
|+|++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+ + .+|++|+.||.|++||++++. ....+ ..|..
T Consensus 137 pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~ 215 (344)
T 4gqb_B 137 SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-PASQIGCSAPGY 215 (344)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-CEEECC----CC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc-eeeeeecceeec
Confidence 999999999999999999999999999999999999999994 3 689999999999999999874 44444 34667
Q ss_pred CeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEEC
Q psy4876 420 EVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 420 ~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~ 498 (609)
.+.+++|+| ++++|++|+.||.|++||++++ +++..+.+|...|.+++|+|++..+|++|+ .|+.|+|||+
T Consensus 216 ~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs--~D~~i~vwd~ 287 (344)
T 4gqb_B 216 LPTSLAWHPQQSEVFVFGDENGTVSLVDTKST------SCVLSSAVHSQCVTGLVFSPHSVPFLASLS--EDCSLAVLDS 287 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEESCC--------CCEEEECCSSCEEEEEECSSSSCCEEEEE--TTSCEEEECT
T ss_pred cceeeeecCCCCcceEEeccCCcEEEEECCCC------cEEEEEcCCCCCEEEEEEccCCCeEEEEEe--CCCeEEEEEC
Confidence 899999999 5678999999999999999988 788899999999999999999988888874 8999999999
Q ss_pred CCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc
Q psy4876 499 SSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV 545 (609)
Q Consensus 499 ~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~ 545 (609)
.+++++....+...|.+++|+|++..+++. ++.|++|++|++++..
T Consensus 288 ~~~~~~~~~~H~~~V~~v~~sp~~~~llas-~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 288 SLSELFRSQAHRDFVRDATWSPLNHSLLTT-VGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TCCEEEEECCCSSCEEEEEECSSSTTEEEE-EETTSCEEEEECCC--
T ss_pred CCCcEEEEcCCCCCEEEEEEeCCCCeEEEE-EcCCCeEEEEECCCCC
Confidence 999887665566799999999999876644 3489999999998654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=299.78 Aligned_cols=249 Identities=23% Similarity=0.386 Sum_probs=222.3
Q ss_pred eeec-CCCCeEEEEEccC----CCEEEEEeCCCeEEEEeCCCCee--EEEecCCCCceEEEEe--cCCEEEEEecCCeEE
Q psy4876 330 MDLE-GNENVCSVAWIQE----GYMLGVGTSLGTVQLWDVSAKKK--CRTMDGHDVRVGALAW--NTYILSSGSRCGNIV 400 (609)
Q Consensus 330 ~~~~-h~~~V~~v~~spd----g~~Lasgs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~ 400 (609)
.... |.+.|.+++|+++ +.+|++|+.|+.|+|||+..++. ...+.+|...|.+++| ++.++++++.|++|+
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 3344 9999999999985 57999999999999999987653 4578999999999999 468999999999999
Q ss_pred EEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCc
Q psy4876 401 HHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPN 480 (609)
Q Consensus 401 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 480 (609)
+||+.++ ..+..+..|...+.+++|+|++++|++|+.|+.|++||++++ .....+..|...|.+++|+|++.
T Consensus 106 lWd~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~------~~~~~~~~~~~~v~~~~~spdg~- 177 (321)
T 3ow8_A 106 LWDLENG-KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG------KKEYSLDTRGKFILSIAYSPDGK- 177 (321)
T ss_dssp EEETTTT-EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC------SEEEEEECSSSCEEEEEECTTSS-
T ss_pred EEECCCC-CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC------ceeEEecCCCceEEEEEECCCCC-
Confidence 9999987 577788889999999999999999999999999999999988 67778888999999999999985
Q ss_pred EEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEE
Q psy4876 481 VLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLN 559 (609)
Q Consensus 481 llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~ 559 (609)
+|++|+ .|+.|++||+++++++..+..+ ..|.+++|+|++++|++ |+.|+.|+|||+.++..+..+.+|...|.+
T Consensus 178 ~lasg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 253 (321)
T 3ow8_A 178 YLASGA--IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT--ASDDGYIKIYDVQHANLAGTLSGHASWVLN 253 (321)
T ss_dssp EEEEEE--TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEE--ECTTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred EEEEEc--CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEE--EcCCCeEEEEECCCcceeEEEcCCCCceEE
Confidence 566653 8999999999999999999865 48999999999999998 558999999999999999999999999999
Q ss_pred EEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 560 LAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 560 l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
++|+|++.+|++++.|++|+|||+.++....
T Consensus 254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 284 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH 284 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence 9999999999999999999999998876543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=306.42 Aligned_cols=288 Identities=13% Similarity=0.196 Sum_probs=238.3
Q ss_pred eeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
..|.+++|+|++ +++++.|+.|+|||+.+ +....+..+. |...|.+++|+|+
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~-------------------------~~~~~~~~~~~h~~~v~~~~~~~~ 63 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSG-------------------------NKWVQVHELKEHNGQVTGVDWAPD 63 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEET-------------------------TEEEEEEEEECCSSCEEEEEEETT
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-------------------------CcEEeeeeecCCCCcccEEEEeCC
Confidence 358899999996 44566899999999987 5555666666 8999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEE--ecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe---eEEEEccCCC
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRT--MDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDH---KVALLQNHTQ 419 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~--l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~---~~~~~~~h~~ 419 (609)
+++|++|+.||.|++||+.+++.... +..|...|.+++| ++.+|++++.||.|++||++.... .......|..
T Consensus 64 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 64 SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred CCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 99999999999999999988875444 4679999999999 578999999999999999998652 2333467899
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC------------CCccceEeecCCcccEEEEEEcCCCCcEEEEEec
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHT------------FSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~------------~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggG 487 (609)
.|.+++|+|++++|++|+.||.|++||++..... .....+..+..|...|.+++|+|++. ++++++
T Consensus 144 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~- 221 (372)
T 1k8k_C 144 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVS- 221 (372)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEE-
T ss_pred CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC-EEEEEe-
Confidence 9999999999999999999999999997522100 01267778889999999999999885 555653
Q ss_pred cCCCeEEEEECCCCceeEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCC--Cc-------------------
Q psy4876 488 TADRHIYFWNVSSGACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPS--LV------------------- 545 (609)
Q Consensus 488 s~Dg~I~iwd~~t~~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~--~~------------------- 545 (609)
.|+.|++||+++++++..+..+. .+.+++|+|++.++++ | .|+.|++|++.. +.
T Consensus 222 -~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (372)
T 1k8k_C 222 -HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA--G-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT 297 (372)
T ss_dssp -TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE--E-TTSSCEEEEEETTTTEEEECCCCCCC--------C
T ss_pred -CCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEE--E-eCCeEEEEEccCcCceEEEeeccCccccchhhhcc
Confidence 89999999999999999988664 8999999999998776 5 799999999977 32
Q ss_pred -------------eE------EEE-eCCCCCEEEEEEe-CCC---CEEEEEECCCCEEEEEcCCCcc
Q psy4876 546 -------------KV------AEL-HGHSARVLNLAMS-PDE---TTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 546 -------------~~------~~l-~~h~~~V~~l~~s-pdg---~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
.. ..+ .+|...|++++|+ ++| .+|++|+.||.|++|++.+.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 298 ARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp HHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred hhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 00 223 4899999999976 677 9999999999999999976543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=305.16 Aligned_cols=282 Identities=15% Similarity=0.234 Sum_probs=236.2
Q ss_pred ceeEEEEEecCCC--eEEEE-c---CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEE
Q psy4876 269 DYYLNLIDWSHFN--VLAVA-L---GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVA 342 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s-~---dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~ 342 (609)
...|.+++|+|++ +++++ . |+.|+|||+.+ +.........|...|.+++
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~-------------------------~~~~~~~~~~~~~~v~~~~ 72 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH-------------------------GDLKLLREIEKAKPIKCGT 72 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECS-------------------------SSEEEEEEEEESSCEEEEE
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCC-------------------------CcccceeeecccCcEEEEE
Confidence 4468999999986 55544 3 89999999998 6666666666899999999
Q ss_pred EccC---CCEEEEEeCCCeEEEEeCCCCe-eEEEecCCCCceEEEEe--------cCCEEEEEecCCeEEEEEcCCCCee
Q psy4876 343 WIQE---GYMLGVGTSLGTVQLWDVSAKK-KCRTMDGHDVRVGALAW--------NTYILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 343 ~spd---g~~Lasgs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~--------~~~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
|+|+ +.+|++|+.||.|++||+.+++ .+..+.+|...|.++.| ++.+|++++.||.|++||++.....
T Consensus 73 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~ 152 (357)
T 3i2n_A 73 FGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDP 152 (357)
T ss_dssp CTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSC
T ss_pred EcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCc
Confidence 9998 6999999999999999999888 88999999999999966 3679999999999999999987546
Q ss_pred EEEEccCCC----CeEEEE----EccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcC---CCC
Q psy4876 411 VALLQNHTQ----EVCGLK----WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP---WSP 479 (609)
Q Consensus 411 ~~~~~~h~~----~V~~l~----~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---~~~ 479 (609)
+..+..|.. .|.+++ |+|++.+|++++.||.|++||++++ +. .....|...|.+++|+| ++.
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~-~~~~~~~~~v~~~~~~~~~~~~~ 225 (357)
T 3i2n_A 153 VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM------AL-RWETNIKNGVCSLEFDRKDISMN 225 (357)
T ss_dssp SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT------EE-EEEEECSSCEEEEEESCSSSSCC
T ss_pred ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC------ce-eeecCCCCceEEEEcCCCCCCCC
Confidence 777766654 799998 7889999999999999999999987 33 33456889999999999 665
Q ss_pred cEEEEEeccCCCeEEEEECCCCceeEEEc------CCCCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCC--------
Q psy4876 480 NVLASGGGTADRHIYFWNVSSGACLDSID------TKSQVCALLWNSDYK-ELVSAHGFAQNQLIIWKYPSL-------- 544 (609)
Q Consensus 480 ~llasggGs~Dg~I~iwd~~t~~~~~~~~------~~~~v~sl~~s~~g~-~l~~~sG~~dg~I~Iwd~~~~-------- 544 (609)
++++++ .|+.|++||+++++.+..+. +...|.+++|+|++. ++++ |..||.|++||+..+
T Consensus 226 -~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~ 300 (357)
T 3i2n_A 226 -KLVATS--LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLT--AGGAGGLHLWKYEYPIQRSKKDS 300 (357)
T ss_dssp -EEEEEE--STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEE--EETTSEEEEEEEECCSCC--CCT
T ss_pred -EEEEEC--CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEE--EeCCCcEEEeecCCCcccccccC
Confidence 555553 89999999998877655443 456899999999999 5666 448999999998753
Q ss_pred -----------ceEEEEeCCCCCEEEEEEeCCCCEEE-EEECCCCEEEEEcCCCc
Q psy4876 545 -----------VKVAELHGHSARVLNLAMSPDETTVL-SAGADETLRLWKIFEKV 587 (609)
Q Consensus 545 -----------~~~~~l~~h~~~V~~l~~spdg~~L~-s~s~Dg~I~iWdl~~~~ 587 (609)
..+..+.+|...|.+++|+|++++|+ +++.||.|+|||+....
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 301 EGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp TSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 46778889999999999999999998 89999999999998654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-35 Score=304.16 Aligned_cols=284 Identities=19% Similarity=0.311 Sum_probs=234.4
Q ss_pred ceeEEEEEecCC----C--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec---CCCCeE
Q psy4876 269 DYYLNLIDWSHF----N--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE---GNENVC 339 (609)
Q Consensus 269 ~~~v~~l~wsp~----~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---h~~~V~ 339 (609)
...|.+++|+|+ . +++++.++.|+|||+.+. .....+..+. |...|+
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~------------------------~~~~~~~~~~~~~~~~~v~ 73 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ------------------------GEIRLLQSYVDADADENFY 73 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG------------------------GCEEEEEEEECSCTTCCEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC------------------------cEEEeeeeccccCCCCcEE
Confidence 346899999983 3 788888999999999861 2222333222 678999
Q ss_pred EEEEccC----CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe---cCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 340 SVAWIQE----GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 340 ~v~~spd----g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
+++|+|+ |.+|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++|+.||.|++||++++ ..+.
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~ 152 (366)
T 3k26_A 74 TCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD-TLVA 152 (366)
T ss_dssp EEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT-EEEE
T ss_pred EEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC-eEEE
Confidence 9999999 679999999999999999999999999999999999999 4589999999999999999987 4666
Q ss_pred EE---ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCC----------------------ccceEeecCCcc
Q psy4876 413 LL---QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS----------------------TQPIHSLSRHQA 467 (609)
Q Consensus 413 ~~---~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~----------------------~~~~~~~~~h~~ 467 (609)
.+ ..|...|.+++|+|++.+|++++.||.|++||++++..... .........|..
T Consensus 153 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 153 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp EECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred EecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 66 68999999999999999999999999999999987621100 011223334999
Q ss_pred cEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce--------------eEEEcCC-CCeEEEEEcCC--CCeEEEEEe
Q psy4876 468 AVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC--------------LDSIDTK-SQVCALLWNSD--YKELVSAHG 530 (609)
Q Consensus 468 ~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~--------------~~~~~~~-~~v~sl~~s~~--g~~l~~~sG 530 (609)
.|.+++|+ + .++++++ .|+.|++||+.++.. +..+..+ ..|.+++|+++ +++|++ |
T Consensus 233 ~v~~~~~~--~-~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~--~ 305 (366)
T 3k26_A 233 YVDCVRWL--G-DLILSKS--CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL--G 305 (366)
T ss_dssp CCCEEEEE--T-TEEEEEC--SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE--E
T ss_pred eEEEEEEc--C-CEEEEEe--cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE--E
Confidence 99999998 3 4777764 899999999987754 5555544 57999999999 999998 5
Q ss_pred cCCCeEEEEECCCCc----eEEEEeCC--CCCEEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 531 FAQNQLIIWKYPSLV----KVAELHGH--SARVLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 531 ~~dg~I~Iwd~~~~~----~~~~l~~h--~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
..||.|++||+.+++ ....+.+| ...|.+++|+|++++|++++.||.|+|||+.
T Consensus 306 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 306 NQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 589999999999875 44577777 7999999999999999999999999999985
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=307.12 Aligned_cols=275 Identities=17% Similarity=0.262 Sum_probs=242.9
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|.+++|+|++ +++++.|+.|++||... . .+..+. |...|.+++|+|
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~--------------------------~--~~~~~~~~~~~v~~~~~~~ 159 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKTG--------------------------A--LLNVLNFHRAPIVSVKWNK 159 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEETTS--------------------------C--EEEEECCCCSCEEEEEECT
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------------------------C--eeeeccCCCccEEEEEECC
Confidence 3468999999986 66688899999999432 2 233444 889999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCc---------------eEEEEe-cCCEEEEEecCCeEEEEEcCCCCe
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVR---------------VGALAW-NTYILSSGSRCGNIVHHDVRSRDH 409 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~---------------V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~ 409 (609)
++++|++++.||.|++||+.+++.+..+..+... +.+++| .+..+++++.+|.|++||+... .
T Consensus 160 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~-~ 238 (425)
T 1r5m_A 160 DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK-T 238 (425)
T ss_dssp TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS-S
T ss_pred CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC-c
Confidence 9999999999999999999999999999888777 889999 4678999999999999999987 4
Q ss_pred eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC
Q psy4876 410 KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA 489 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~ 489 (609)
.+..+..|...|.+++|+|++++|++++.|+.|++||+..+ ..+..+..|...|.+++|+|++ ++++++ .
T Consensus 239 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~--~l~~~~--~ 308 (425)
T 1r5m_A 239 PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG------NSQNCFYGHSQSIVSASWVGDD--KVISCS--M 308 (425)
T ss_dssp CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB------SCSEEECCCSSCEEEEEEETTT--EEEEEE--T
T ss_pred eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC------ccceEecCCCccEEEEEECCCC--EEEEEe--C
Confidence 67788899999999999999999999999999999999987 6778888899999999999988 666654 8
Q ss_pred CCeEEEEECCCCceeEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc--------------------eEE
Q psy4876 490 DRHIYFWNVSSGACLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV--------------------KVA 548 (609)
Q Consensus 490 Dg~I~iwd~~t~~~~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~--------------------~~~ 548 (609)
|+.|++||+.+++++..+.. ...+.+++|+|++++|+++ ..||.|+|||+.++. .+.
T Consensus 309 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (425)
T 1r5m_A 309 DGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVA--FMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYA 386 (425)
T ss_dssp TSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEE--ETTSCEEEEECHHHHC--------------CEECCEEE
T ss_pred CCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEE--ECCCeEEEEECCCCccceeeeecccccccCcccchhhh
Confidence 99999999999999988876 4589999999999999984 489999999999888 889
Q ss_pred EEeCCCC--CEEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 549 ELHGHSA--RVLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 549 ~l~~h~~--~V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
.+.+|.. .|.+++|+|++++|++++.||.|++|++.
T Consensus 387 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 387 SYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred hhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 9999976 99999999999999999999999999986
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=318.77 Aligned_cols=287 Identities=16% Similarity=0.236 Sum_probs=226.6
Q ss_pred ceeEEEEEecCC--C-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSHF--N-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp~--~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~s 344 (609)
+..|++|+|+|. + +++|+.||.|+|||+.+ +....+..+. |.+.|++|+|+
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~-------------------------~~~~~~~~~~gH~~~V~~l~f~ 173 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGI-------------------------KDKPTFIKGIGAGGSITGLKFN 173 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSC-------------------------CSCCEEECCCSSSCCCCEEEEC
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCC-------------------------CCceeEEEccCCCCCEEEEEEe
Confidence 345999999995 3 55588899999999987 5555555555 99999999999
Q ss_pred c-CCCEEEEEeCCCeEEEEeCCCCeeEEEecC--CCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 345 Q-EGYMLGVGTSLGTVQLWDVSAKKKCRTMDG--HDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 345 p-dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
| ++.+|++|+.||+|+|||++++........ +...+.+++| ++.+|++|+.||.|++||++.. .+..+.+|..
T Consensus 174 p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~ 251 (435)
T 4e54_B 174 PLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKK 251 (435)
T ss_dssp SSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSS
T ss_pred CCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccc
Confidence 8 689999999999999999987654444433 3445778888 5789999999999999999753 5677889999
Q ss_pred CeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEEC
Q psy4876 420 EVCGLKWSPDGR-YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 420 ~V~~l~~spdg~-~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~ 498 (609)
.|.+++|+|++. +|++|+.|+.|+|||++..... ..+....+|...|.+++|+|++. +|++++ .|+.|++||+
T Consensus 252 ~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~spdg~-~l~s~~--~D~~i~iwd~ 325 (435)
T 4e54_B 252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK---ASFLYSLPHRHPVNAACFSPDGA-RLLTTD--QKSEIRVYSA 325 (435)
T ss_dssp CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS---SCCSBCCBCSSCEEECCBCTTSS-EEEEEE--SSSCEEEEES
T ss_pred eEEeeeecCCCceEEEEecCcceeeEEeccccccc---ceEEEeeeccccccceeECCCCC-eeEEEc--CCCEEEEEEC
Confidence 999999999876 7889999999999999887422 23334467999999999999985 555653 8999999999
Q ss_pred CCCceeEEEcCCC-------CeEEEEEcCCCCeEEEEE----------ecCCCeEEEEECCCCceEEEEe-CCCCCEEEE
Q psy4876 499 SSGACLDSIDTKS-------QVCALLWNSDYKELVSAH----------GFAQNQLIIWKYPSLVKVAELH-GHSARVLNL 560 (609)
Q Consensus 499 ~t~~~~~~~~~~~-------~v~sl~~s~~g~~l~~~s----------G~~dg~I~Iwd~~~~~~~~~l~-~h~~~V~~l 560 (609)
.++.+...+..+. .+....|++++..++++. +..++.|++||..+++.+..+. +|...|.++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~ 405 (435)
T 4e54_B 326 SQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSL 405 (435)
T ss_dssp SSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCE
T ss_pred CCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEE
Confidence 9998877765332 244567888877776642 2234679999999999998875 688888887
Q ss_pred -EEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 561 -AMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 561 -~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
+|+|+|.+|++|+ |++|+||++.++...
T Consensus 406 ~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 406 NEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp EEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 6999999999875 889999999887543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=304.73 Aligned_cols=277 Identities=16% Similarity=0.191 Sum_probs=228.3
Q ss_pred eeEEEEEecCCC---eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 270 YYLNLIDWSHFN---VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 270 ~~v~~l~wsp~~---lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
..|++++|+|++ +++++.|+.|+|||+.+ +......... |...|.+++|+|
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-------------------------~~~~~~~~~~~h~~~v~~~~~~~ 128 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDV-------------------------QNKTSFIQGMGPGDAITGMKFNQ 128 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTS-------------------------TTCEEEECCCSTTCBEEEEEEET
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCC-------------------------cccceeeecCCcCCceeEEEeCC
Confidence 458999999986 66688899999999988 5555555543 899999999999
Q ss_pred -CCCEEEEEeCCCeEEEEeCCCCeeEEEecC---CCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 346 -EGYMLGVGTSLGTVQLWDVSAKKKCRTMDG---HDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 346 -dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~---h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
++.+|++++.||.|++||+.+ ..+..+.. |...|.+++| ++.+|++|+.||.|++||++. ..+..+.+|..
T Consensus 129 ~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~h~~ 205 (383)
T 3ei3_B 129 FNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG--HEIFKEKLHKA 205 (383)
T ss_dssp TEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS--CEEEEEECSSS
T ss_pred CCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC--CEEEEeccCCC
Confidence 779999999999999999986 55555544 4488999999 578999999999999999953 47888899999
Q ss_pred CeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcC-CCCcEEEEEeccCCCeEEEEE
Q psy4876 420 EVCGLKWSPDGR-YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP-WSPNVLASGGGTADRHIYFWN 497 (609)
Q Consensus 420 ~V~~l~~spdg~-~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~llasggGs~Dg~I~iwd 497 (609)
.|.+++|+|+++ +|++|+.|+.|++||+++.... ...+..+ +|...|.+++|+| ++. ++++++ .|+.|++||
T Consensus 206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~-~~~~~v~~~~~s~~~~~-~l~~~~--~d~~i~iwd 279 (383)
T 3ei3_B 206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK--NSYIAEM-PHEKPVNAAYFNPTDST-KLLTTD--QRNEIRVYS 279 (383)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST--TCEEEEE-ECSSCEEEEEECTTTSC-EEEEEE--SSSEEEEEE
T ss_pred cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc--cceEEEe-cCCCceEEEEEcCCCCC-EEEEEc--CCCcEEEEE
Confidence 999999999999 9999999999999999974221 1344555 6999999999999 775 555653 799999999
Q ss_pred CCCCceeEEEcCC------------------CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC--CCCCE
Q psy4876 498 VSSGACLDSIDTK------------------SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG--HSARV 557 (609)
Q Consensus 498 ~~t~~~~~~~~~~------------------~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~--h~~~V 557 (609)
+++++.+..+..+ ..+..++|++++++ +|+.|+.|+|||+.+++.+..+.+ |...+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~----s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~ 355 (383)
T 3ei3_B 280 SYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL----LLNDKRTIDIYDANSGGLVHQLRDPNAAGII 355 (383)
T ss_dssp TTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT----CTTCCCCEEEEETTTCCEEEEECBTTBCSCC
T ss_pred CCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc----ccCCCCeEEEEecCCCceeeeecCCCCCceE
Confidence 9998876665422 23444566666655 256899999999999999999987 45778
Q ss_pred EEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 558 LNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 558 ~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
..++|+|++.+|++|+ |+.|+|||+.+
T Consensus 356 ~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 356 SLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEEEecCccEEEEec-CCcEEEEecCC
Confidence 8889999999999997 99999999975
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=293.56 Aligned_cols=250 Identities=14% Similarity=0.268 Sum_probs=223.1
Q ss_pred eeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEc
Q psy4876 328 HLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDV 404 (609)
Q Consensus 328 ~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~ 404 (609)
...++. |.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+..|...|.+++| ++.+|++|+.|+.|++||+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 344565 9999999999999999999999999999999999999999999999999999 5789999999999999999
Q ss_pred CCCC---eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcE
Q psy4876 405 RSRD---HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 405 ~~~~---~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 481 (609)
.+.. .....+.+|...|.++.|++++. +++++.|+.|++||+.++ ..+..+.+|...|.+++|+|++. +
T Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~------~~~~~~~~h~~~v~~~~~~~~~~-~ 198 (340)
T 1got_B 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG------QQTTTFTGHTGDVMSLSLAPDTR-L 198 (340)
T ss_dssp TTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSS-E
T ss_pred ccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC------cEEEEEcCCCCceEEEEECCCCC-E
Confidence 8753 34567789999999999998875 889999999999999988 78889999999999999999874 6
Q ss_pred EEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC--CCCCEE
Q psy4876 482 LASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG--HSARVL 558 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~--h~~~V~ 558 (609)
+++|+ .|+.|++||++++.++..+..+ ..|.+++|+|++++|+++ +.|+.|+|||+.++..+..+.. +...|.
T Consensus 199 l~sg~--~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~--s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~ 274 (340)
T 1got_B 199 FVSGA--CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG--SDDATCRLFDLRADQELMTYSHDNIICGIT 274 (340)
T ss_dssp EEEEE--TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEE--ETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred EEEEe--CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEE--cCCCcEEEEECCCCcEEEEEccCCcccceE
Confidence 67764 8999999999999999998765 589999999999999984 4899999999999988877643 335799
Q ss_pred EEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 559 NLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 559 ~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
+++|+|+|++|++|+.|+.|++||+......
T Consensus 275 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~ 305 (340)
T 1got_B 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305 (340)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEECCCCCEEEEECCCCeEEEEEcccCcEe
Confidence 9999999999999999999999999876643
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=288.26 Aligned_cols=244 Identities=20% Similarity=0.325 Sum_probs=208.0
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC--CeeEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSA--KKKCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSR 407 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~--~~~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~ 407 (609)
|.+.|.+++|+|+|++||+|+.||.|+|||+.. .+.+..+.+|...|.+++|. +.+|++|+.||+|++||+.++
T Consensus 8 h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~ 87 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG 87 (297)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS
T ss_pred CcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC
Confidence 889999999999999999999999999999974 46788999999999999993 689999999999999999875
Q ss_pred C-eeEEEEccCCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC------
Q psy4876 408 D-HKVALLQNHTQEVCGLKWSPD--GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS------ 478 (609)
Q Consensus 408 ~-~~~~~~~~h~~~V~~l~~spd--g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~------ 478 (609)
. ..+..+.+|...|.+++|+|+ |.+|++|+.|+.|++||++.+.. .....+.+|...|.+++|+|++
T Consensus 88 ~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~----~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 163 (297)
T 2pm7_B 88 RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT----TSPIIIDAHAIGVNSASWAPATIEEDGE 163 (297)
T ss_dssp CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC----BCCEEEECCSSCEEEEEECCCC------
T ss_pred ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc----eeeeeeecccCccceEeecCCccccccc
Confidence 3 345677889999999999997 89999999999999999987521 1245677899999999999974
Q ss_pred ------CcEEEEEeccCCCeEEEEECCCCc----eeEEEcCC-CCeEEEEEcCCC---CeEEEEEecCCCeEEEEECCCC
Q psy4876 479 ------PNVLASGGGTADRHIYFWNVSSGA----CLDSIDTK-SQVCALLWNSDY---KELVSAHGFAQNQLIIWKYPSL 544 (609)
Q Consensus 479 ------~~llasggGs~Dg~I~iwd~~t~~----~~~~~~~~-~~v~sl~~s~~g---~~l~~~sG~~dg~I~Iwd~~~~ 544 (609)
..+|++|+ .|+.|++||++++. +...+..| ..|.+++|+|++ .+|++ ++.|+.|+|||+...
T Consensus 164 ~~~~~~~~~l~sgs--~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las--~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 164 HNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS--VSQDRTCIIWTQDNE 239 (297)
T ss_dssp ------CCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EETTSCEEEEEESST
T ss_pred CCCCCCcceEEEEc--CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE--EECCCcEEEEEeCCC
Confidence 35788874 89999999998776 55666655 589999999995 67777 448999999998764
Q ss_pred c---eEEEE--eCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 545 V---KVAEL--HGHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 545 ~---~~~~l--~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
. ....+ ..|...|.+++|+|+|++|++++.|++|+||+...
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 3 22233 46888999999999999999999999999999864
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-34 Score=305.06 Aligned_cols=281 Identities=12% Similarity=0.231 Sum_probs=229.1
Q ss_pred ceeEEEEEecC-CC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSH-FN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp-~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~sp 345 (609)
...|++|+|+| ++ +++++.|+.|+|||+.+.... ........+.|...|.+++|+|
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~---------------------~~~~~~~~~~h~~~v~~~~~~~ 121 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG---------------------EVYSSSLTYDCSSTVTQITMIP 121 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT---------------------CCCSCSEEEECSSCEEEEEECT
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccC---------------------cccceeeeccCCCCEEEEEEeC
Confidence 35699999999 75 677889999999998651000 1122233445899999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCC---CCeeEEEecC------------CCCceEEEEe----cCCEEEEEecCCeEEEEEcCC
Q psy4876 346 EGYMLGVGTSLGTVQLWDVS---AKKKCRTMDG------------HDVRVGALAW----NTYILSSGSRCGNIVHHDVRS 406 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~---~~~~~~~l~~------------h~~~V~~l~~----~~~~L~sgs~dg~I~iwd~~~ 406 (609)
++.+|++|+.||.|+|||+. +++.+..+.+ +...+.++.+ ++.+|++|+.||.|++||+++
T Consensus 122 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 201 (437)
T 3gre_A 122 NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT 201 (437)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT
T ss_pred CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 99999999999999999995 4444443322 5566777774 378999999999999999998
Q ss_pred CCeeEEEEcc--CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec-CCcccEEEEEEcCC---CCc
Q psy4876 407 RDHKVALLQN--HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS-RHQAAVKAIAWCPW---SPN 480 (609)
Q Consensus 407 ~~~~~~~~~~--h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~---~~~ 480 (609)
. ..+..+.. |...|.+++|+|++.+|++|+.||.|++||++.+ +++..+. .|...|.+++|+|. ...
T Consensus 202 ~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~s~~~~ 274 (437)
T 3gre_A 202 L-ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN------VLIRSWSFGDHAPITHVEVCQFYGKNSV 274 (437)
T ss_dssp C-CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT------EEEEEEBCTTCEEEEEEEECTTTCTTEE
T ss_pred C-eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc------cEEEEEecCCCCceEEEEeccccCCCcc
Confidence 7 46777777 8999999999999999999999999999999987 6777775 78889999988764 224
Q ss_pred EEEEEeccCCCeEEEEECCCCceeEEEcCC---------------------------CCeEEEEEcCCCCeEEEEEecCC
Q psy4876 481 VLASGGGTADRHIYFWNVSSGACLDSIDTK---------------------------SQVCALLWNSDYKELVSAHGFAQ 533 (609)
Q Consensus 481 llasggGs~Dg~I~iwd~~t~~~~~~~~~~---------------------------~~v~sl~~s~~g~~l~~~sG~~d 533 (609)
++++| +.|+.|++||+.+++++..+..+ ..|.+++|+ ++++|++ |+.|
T Consensus 275 ~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s--~~~d 349 (437)
T 3gre_A 275 IVVGG--SSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT--DEAT 349 (437)
T ss_dssp EEEEE--STTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE--EGGG
T ss_pred EEEEE--cCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe--cCCC
Confidence 67776 48999999999999988877632 248889999 7777777 5689
Q ss_pred CeEEEEECCCCceEEEEeC-------------------------------------CCCCEEEEEEeCC--CCEEEEEEC
Q psy4876 534 NQLIIWKYPSLVKVAELHG-------------------------------------HSARVLNLAMSPD--ETTVLSAGA 574 (609)
Q Consensus 534 g~I~Iwd~~~~~~~~~l~~-------------------------------------h~~~V~~l~~spd--g~~L~s~s~ 574 (609)
+.|++||+.+++.+..+.+ |.+.|++++|+++ +.+|++|+.
T Consensus 350 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~ 429 (437)
T 3gre_A 350 SSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDN 429 (437)
T ss_dssp TEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEET
T ss_pred CeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcC
Confidence 9999999999887777765 8899999999998 789999999
Q ss_pred CCCEEEEE
Q psy4876 575 DETLRLWK 582 (609)
Q Consensus 575 Dg~I~iWd 582 (609)
||.|+||+
T Consensus 430 dG~I~iw~ 437 (437)
T 3gre_A 430 SGLIGIFQ 437 (437)
T ss_dssp TSCEEEEC
T ss_pred CceEEEeC
Confidence 99999995
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=290.25 Aligned_cols=280 Identities=18% Similarity=0.207 Sum_probs=238.1
Q ss_pred eEEEEEecCCC-eEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 271 YLNLIDWSHFN-VLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 271 ~v~~l~wsp~~-lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
.|.+++|+|++ +++ +..++.+.+|.... ....+..+.|...|++++|+|+++
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~h~~~v~~~~~~~~~~ 64 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPR--------------------------HARQINTLNHGEVVCAVTISNPTR 64 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCS--------------------------EEEEEEEECCSSCCCEEEECSSSS
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCC--------------------------ccccceeccCCCceEEEEEecCCc
Confidence 47789999997 554 44455565564433 233444445999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCe---eEEEec--CCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe-eEEEEccCCCC
Q psy4876 349 MLGVGTSLGTVQLWDVSAKK---KCRTMD--GHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDH-KVALLQNHTQE 420 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~---~~~~l~--~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~ 420 (609)
+|++++ ||.|++||+.+++ .+..+. +|...|.+++| ++.+|++++.||.|++||+.+... ....+..|...
T Consensus 65 ~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 143 (337)
T 1gxr_A 65 HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 143 (337)
T ss_dssp EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSC
T ss_pred EEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCc
Confidence 999998 9999999998764 233333 79999999999 478999999999999999988642 45667889999
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
|.+++|+|++++|++++.||.|++||++++ +.+..+..|...|.+++|+|++. ++++++ .|+.|++||+++
T Consensus 144 i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~dg~i~~~d~~~ 214 (337)
T 1gxr_A 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQ------TLVRQFQGHTDGASCIDISNDGT-KLWTGG--LDNTVRSWDLRE 214 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEETTT
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCC------ceeeeeecccCceEEEEECCCCC-EEEEEe--cCCcEEEEECCC
Confidence 999999999999999999999999999987 77888889999999999999885 555553 899999999999
Q ss_pred CceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEE
Q psy4876 501 GACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRL 580 (609)
Q Consensus 501 ~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~i 580 (609)
++.+..+.....+.+++|+|+++.++++ ..++.|++||+.+.+.. .+..|...|.+++|+|++++|++++.||.|++
T Consensus 215 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 215 GRQLQQHDFTSQIFSLGYCPTGEWLAVG--MESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp TEEEEEEECSSCEEEEEECTTSSEEEEE--ETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CceEeeecCCCceEEEEECCCCCEEEEE--cCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEE
Confidence 9999999888899999999999999984 48999999999987754 66789999999999999999999999999999
Q ss_pred EEcCCCccc
Q psy4876 581 WKIFEKVKS 589 (609)
Q Consensus 581 Wdl~~~~~~ 589 (609)
|++..+...
T Consensus 292 ~~~~~~~~~ 300 (337)
T 1gxr_A 292 WRTPYGASI 300 (337)
T ss_dssp EETTTCCEE
T ss_pred EECCCCeEE
Confidence 999987765
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=308.07 Aligned_cols=271 Identities=25% Similarity=0.458 Sum_probs=236.7
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|++++|+|++ +++++.|+.|++|+... . .+..+. |...|.+++|+|
T Consensus 262 ~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-------------------------~---~~~~~~~h~~~v~~~~~~~ 313 (577)
T 2ymu_A 262 SSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-------------------------Q---LLQTLTGHSSSVWGVAFSP 313 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTS-------------------------C---EEEEECCCSSCEEEEEECT
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-------------------------c---EEEEEecCCCCeEEEEECC
Confidence 3458899999986 67788999999999754 2 223344 889999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
++.+|++++.||.|++||... ..+..+.+|...|.+++| ++.+|++|+.||.|++||... ..+..+.+|...|.+
T Consensus 314 ~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~--~~~~~~~~~~~~v~~ 390 (577)
T 2ymu_A 314 DGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRG 390 (577)
T ss_dssp TSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC--CEEEEEECCSSCEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC--CEEEEecCCCCCeEE
Confidence 999999999999999999864 567788899999999999 578999999999999999653 467888899999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC 503 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~ 503 (609)
++|+|+|++|++++.|+.|++||.. + +.+..+.+|...|.+++|+|++. ++++++ .|+.|++||. +++.
T Consensus 391 ~~~s~dg~~l~~~~~d~~v~~~~~~-~------~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~--~d~~v~~w~~-~~~~ 459 (577)
T 2ymu_A 391 VAFSPDGQTIASASDDKTVKLWNRN-G------QLLQTLTGHSSSVWGVAFSPDDQ-TIASAS--DDKTVKLWNR-NGQL 459 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECTT-C------CEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEET-TSCE
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCC-C------CEEEEecCCCCCeEEEEECCCCC-EEEEEc--CCCEEEEEEC-CCCE
Confidence 9999999999999999999999964 3 57788899999999999999985 556653 8999999996 4666
Q ss_pred eEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEE
Q psy4876 504 LDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWK 582 (609)
Q Consensus 504 ~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWd 582 (609)
+..+..+ ..|.+++|+|++++|+++ ..|+.|+|||. +++.+..+.+|...|++++|+|||++|++++.|+.|+|||
T Consensus 460 ~~~~~~~~~~v~~~~~spd~~~las~--~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 460 LQTLTGHSSSVRGVAFSPDGQTIASA--SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEE--ETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEE--eCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 7666654 589999999999999985 48999999994 6888999999999999999999999999999999999999
Q ss_pred cC
Q psy4876 583 IF 584 (609)
Q Consensus 583 l~ 584 (609)
..
T Consensus 537 ~~ 538 (577)
T 2ymu_A 537 RN 538 (577)
T ss_dssp TT
T ss_pred CC
Confidence 64
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=304.74 Aligned_cols=277 Identities=18% Similarity=0.199 Sum_probs=229.4
Q ss_pred EEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCE
Q psy4876 272 LNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYM 349 (609)
Q Consensus 272 v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~ 349 (609)
++.++|+|++ +++++.|+.|++||+.+ +... ..+.....+....|++++++
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~-------------------------~~~~--~~~~~~~~~~~~~~~~~~~~ 111 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTII-------------------------RDGS--KMLKRADYTAVDTAKLQMRR 111 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCS-------------------------EETT--TTSCSCCEEEEEEECSSSCE
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecc-------------------------ccee--eEEecCCceEEEEEecCCCE
Confidence 3468899985 78899999999999987 3322 22222345566678999999
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEc
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWS 427 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 427 (609)
||+|+.||.|+|||+.+++....+.+|...|.+++| ++.+|++|+.||.|++||+.++ ..+..+.+|...|.+++|+
T Consensus 112 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 112 FILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG-SNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp EEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CCCEEEECCSSCEEEEEEE
T ss_pred EEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC-cCceEEcCCCCcEEEEEEc
Confidence 999999999999999999999998999999999999 5789999999999999999987 4677888999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC---CcccEEEEEE---------------------cCCCCcEEE
Q psy4876 428 PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR---HQAAVKAIAW---------------------CPWSPNVLA 483 (609)
Q Consensus 428 pdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~---h~~~V~~l~~---------------------sp~~~~lla 483 (609)
|++++|++|+.|+.|++||++++ +.+..+.. |...|.+++| +|++. +++
T Consensus 191 ~~~~~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~ 263 (420)
T 3vl1_A 191 DRGRNVLSASLDGTIRLWECGTG------TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVI 263 (420)
T ss_dssp TTTTEEEEEETTSCEEEEETTTT------EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEE
T ss_pred CCCCEEEEEcCCCcEEEeECCCC------ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEE
Confidence 99999999999999999999987 56666653 4445555554 67664 566
Q ss_pred EEeccCCCeEEEEECCCCceeEEEcC--CCCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCCce-EEEEeC-CCCCEE
Q psy4876 484 SGGGTADRHIYFWNVSSGACLDSIDT--KSQVCALLWNSDYK-ELVSAHGFAQNQLIIWKYPSLVK-VAELHG-HSARVL 558 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t~~~~~~~~~--~~~v~sl~~s~~g~-~l~~~sG~~dg~I~Iwd~~~~~~-~~~l~~-h~~~V~ 558 (609)
+|+ .|+.|++||+++++.+..+.. ...+.+++|+|++. ++++ |+.||.|++||+.++.. +..+.+ |...|.
T Consensus 264 ~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~ 339 (420)
T 3vl1_A 264 AGH--VSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYA--GYENGMLAQWDLRSPECPVGEFLINEGTPIN 339 (420)
T ss_dssp EEE--TTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEE--EETTSEEEEEETTCTTSCSEEEEESTTSCEE
T ss_pred EEc--CCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEE--EeCCCeEEEEEcCCCcCchhhhhccCCCCce
Confidence 653 899999999999998887754 35899999999999 7777 45899999999998754 677766 667788
Q ss_pred EEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 559 NLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 559 ~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
++.| +++.+|++++.|+.|++|++.....
T Consensus 340 ~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 340 NVYF-AAGALFVSSGFDTSIKLDIISDPES 368 (420)
T ss_dssp EEEE-ETTEEEEEETTTEEEEEEEECCTTC
T ss_pred EEEe-CCCCEEEEecCCccEEEEeccCCCC
Confidence 8855 5788999999999999999987543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=307.49 Aligned_cols=281 Identities=15% Similarity=0.197 Sum_probs=216.9
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
.|++++|+|++ +++++.|+.|+|||+.+ +....+..+. |...|.+++|+|++
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~-------------------------~~~~~~~~~~~h~~~v~~~~~s~~~ 67 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDG-------------------------NGWKHARTFSDHDKIVTCVDWAPKS 67 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEET-------------------------TEEEECCCBCCCSSCEEEEEECTTT
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccC-------------------------CceEEEEEEecCCceEEEEEEeCCC
Confidence 58889999986 44466899999999987 5445566666 89999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCe---eEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe--eEEEEcc-CCC
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKK---KCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDH--KVALLQN-HTQ 419 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~---~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~--~~~~~~~-h~~ 419 (609)
++|++|+.||.|+|||+.+++ ....+.+|...|.+++| ++.+|++++.||.|++||++.... ....+.. |..
T Consensus 68 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 68 NRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp CCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred CEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 999999999999999999877 67788899999999999 578999999999999999998642 3667777 999
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCC------------CccceEeecCCcccEEEEEEcCCCCcEEEEEec
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTF------------STQPIHSLSRHQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~------------~~~~~~~~~~h~~~V~~l~~sp~~~~llasggG 487 (609)
.|.+++|+|++++|++|+.|+.|++||+....... ...++..+ .|...|.+++|+|++. +|++++
T Consensus 148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~- 224 (377)
T 3dwl_C 148 TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN-ALAYAG- 224 (377)
T ss_dssp CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS-CEEEEE-
T ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC-EEEEEe-
Confidence 99999999999999999999999999986432110 12455566 8999999999999986 555553
Q ss_pred cCCCeEEEEECCCCce----eEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-----------------
Q psy4876 488 TADRHIYFWNVSSGAC----LDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV----------------- 545 (609)
Q Consensus 488 s~Dg~I~iwd~~t~~~----~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~----------------- 545 (609)
.|+.|++||+.++++ +..+..+ ..|.+++|+|++++|++ |..++ +.+|+.....
T Consensus 225 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T 3dwl_C 225 -HDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAA--GYNYS-PILLQGNESGWAHTRDLDAGTSKTSFT 300 (377)
T ss_dssp -TTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEE--ESSSS-EEEECCCC---CCSBCCCSCCCCCCBS
T ss_pred -CCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEE--EcCCc-EEEEEeCCCceEEEeeecccccccccc
Confidence 899999999999987 6666655 47999999999998877 43455 4477654111
Q ss_pred -------------eE------EEE----------------eCCCCCEEEEEEeCCC-C---EEEEEECCCCEEEEEc
Q psy4876 546 -------------KV------AEL----------------HGHSARVLNLAMSPDE-T---TVLSAGADETLRLWKI 583 (609)
Q Consensus 546 -------------~~------~~l----------------~~h~~~V~~l~~spdg-~---~L~s~s~Dg~I~iWdl 583 (609)
.+ ..+ ..|...|+++++.+.+ . .|+|||.||.|+|||+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 301 HTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00 011 1299999999976643 3 6999999999999986
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=306.63 Aligned_cols=285 Identities=18% Similarity=0.304 Sum_probs=235.2
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|.+++|+|++ +++++.|+.|++||+.... .....+..+. |...|.+++|+|
T Consensus 67 ~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~-----------------------~~~~~~~~~~~h~~~v~~~~~~~ 123 (416)
T 2pm9_A 67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN-----------------------NAINSMARFSNHSSSVKTVKFNA 123 (416)
T ss_dssp SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTT-----------------------SCCCEEEECCCSSSCCCEEEECS
T ss_pred CCceEEEEECCCCCeEEEEccCCeEEEeeccccc-----------------------ccccchhhccCCccceEEEEEcC
Confidence 3458999999986 6667889999999997611 1122445555 899999999999
Q ss_pred C-CCEEEEEeCCCeEEEEeCCCCe------eEE---EecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 346 E-GYMLGVGTSLGTVQLWDVSAKK------KCR---TMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 346 d-g~~Lasgs~dg~I~iwd~~~~~------~~~---~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
+ +.+|++|+.||.|++||+.+++ ... .+..|...|.+++|+ +.+|++++.||.|++||+++. ..+.
T Consensus 124 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~ 202 (416)
T 2pm9_A 124 KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK-KEVI 202 (416)
T ss_dssp SSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-EEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-Ccce
Confidence 8 8999999999999999999876 333 346799999999994 579999999999999999987 4666
Q ss_pred EEccC------CCCeEEEEEccCC-CEEEEEeCCC---cEEEEeCCCCCCCCCccceEeec-CCcccEEEEEEcCCCCcE
Q psy4876 413 LLQNH------TQEVCGLKWSPDG-RYLASGGNDN---LLNIWSGVPGQHTFSTQPIHSLS-RHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 413 ~~~~h------~~~V~~l~~spdg-~~lasgs~Dg---~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l 481 (609)
.+..| ...|.+++|+|++ .+|++++.|+ .|++||++++. .++..+. +|...|.+++|+|++..+
T Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~~ 277 (416)
T 2pm9_A 203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-----TPLQTLNQGHQKGILSLDWCHQDEHL 277 (416)
T ss_dssp EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-----SCSBCCCSCCSSCEEEEEECSSCSSC
T ss_pred EEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-----CCcEEeecCccCceeEEEeCCCCCCe
Confidence 77666 7899999999997 6899999998 99999999863 4566677 899999999999944456
Q ss_pred EEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCC-CeEEEEEecCCCeEEEEECCCCceEEEEe--------
Q psy4876 482 LASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDY-KELVSAHGFAQNQLIIWKYPSLVKVAELH-------- 551 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g-~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~-------- 551 (609)
+++++ .|+.|++||+.+++++..+..+ ..|.+++|+|++ .++++ +..|+.|+||++.+........
T Consensus 278 l~s~~--~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s--~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 353 (416)
T 2pm9_A 278 LLSSG--RDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFAC--ASFDNKIEVQTLQNLTNTLDEQETETKQQE 353 (416)
T ss_dssp EEEEE--SSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEE--CCSSSEEEEEESCCCCCSSCC---------
T ss_pred EEEEe--CCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEE--EecCCcEEEEEccCCCCCcccccccccccC
Confidence 66664 7999999999999999998765 589999999999 67777 5589999999997765322111
Q ss_pred ---------------------------CCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 552 ---------------------------GHSARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 552 ---------------------------~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
.|...|.+++|+|||++|++++.|+.|+||++.+.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 354 SETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp -------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 16677889999999999999999999999999864
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-33 Score=283.98 Aligned_cols=252 Identities=21% Similarity=0.381 Sum_probs=223.1
Q ss_pred eeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEE
Q psy4876 327 DHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHD 403 (609)
Q Consensus 327 ~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd 403 (609)
.....+. |...|++++|+|++++|++|+.||.|+||++.+++....+.+|...|.+++| ++.+|++|+.||.|++||
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 3445555 9999999999999999999999999999999999999999999999999999 578999999999999999
Q ss_pred cCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEE
Q psy4876 404 VRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 404 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla 483 (609)
+.++ ..+..+.+|...|.+++|+|++++|++|+.|+.|++||++++ +.+..+..|...|.+++|+|++. +++
T Consensus 94 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~l~ 165 (312)
T 4ery_A 94 VSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG------KCLKTLPAHSDPVSAVHFNRDGS-LIV 165 (312)
T ss_dssp TTTC-CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSS-EEE
T ss_pred CCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------EEEEEecCCCCcEEEEEEcCCCC-EEE
Confidence 9987 477888999999999999999999999999999999999988 67888899999999999999885 566
Q ss_pred EEeccCCCeEEEEECCCCceeEEEcC--CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEE--
Q psy4876 484 SGGGTADRHIYFWNVSSGACLDSIDT--KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLN-- 559 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t~~~~~~~~~--~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~-- 559 (609)
+++ .|+.|++||+++++++..+.. ...+..++|+|++++++++ ..|+.|++||+.+++.+..+.+|...+.+
T Consensus 166 ~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 241 (312)
T 4ery_A 166 SSS--YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 241 (312)
T ss_dssp EEE--TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEE--ETTTEEEEEETTTTEEEEEECSSCCSSSCCC
T ss_pred EEe--CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEE--cCCCeEEEEECCCCcEEEEEEecCCceEEEE
Confidence 653 899999999999998887743 3579999999999999984 48999999999999999999888765332
Q ss_pred EEEe-CCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 560 LAMS-PDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 560 l~~s-pdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
..++ +++.+|++|+.||.|++||+.++....
T Consensus 242 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 273 (312)
T 4ery_A 242 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273 (312)
T ss_dssp EEEECSSSCEEEECCTTSCEEEEETTTCCEEE
T ss_pred EEEEeCCCcEEEEECCCCEEEEEECCCchhhh
Confidence 3344 678999999999999999998876543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-34 Score=297.40 Aligned_cols=244 Identities=16% Similarity=0.243 Sum_probs=203.2
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeee---eeecCCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHL---MDLEGNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~h~~~V~~v~~s 344 (609)
...|.+++|+|++ +++++.||.|+|||+.+ ++.... ....|...|++|+|+
T Consensus 94 ~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~-------------------------~~~~~~~~~~~~~h~~~V~~v~~s 148 (357)
T 4g56_B 94 EAGVTDVAWVSEKGILVASDSGAVELWEILE-------------------------KESLLVNKFAKYEHDDIVKTLSVF 148 (357)
T ss_dssp SSCEEEEEEETTTEEEEEETTSCEEEC---------------------------------CCCCEEECCCSSCEEEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEECCCEEEEeeccc-------------------------cceeEEEeeccCCCCCCEEEEEEC
Confidence 3458999999986 88899999999999987 332222 222388999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--C-CEEEEEecCCeEEEEEcCCCCeeE-EEEccCCCC
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--T-YILSSGSRCGNIVHHDVRSRDHKV-ALLQNHTQE 420 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~-~~L~sgs~dg~I~iwd~~~~~~~~-~~~~~h~~~ 420 (609)
|+|++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+ + .++++++.||.|++||++++.... .....|...
T Consensus 149 pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 228 (357)
T 4g56_B 149 SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTI 228 (357)
T ss_dssp SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecccccc
Confidence 999999999999999999999999999999999999999994 3 589999999999999999864222 223457788
Q ss_pred eEEEEEccC-CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC
Q psy4876 421 VCGLKWSPD-GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS 499 (609)
Q Consensus 421 V~~l~~spd-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~ 499 (609)
+.+++|+|+ +.+|++|+.|+.|++||++++ +.+..+.+|...|.+++|+|++..+|++|+ .|+.|+|||++
T Consensus 229 v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs--~D~~i~iwd~~ 300 (357)
T 4g56_B 229 PTSVTWHPEKDDTFACGDETGNVSLVNIKNP------DSAQTSAVHSQNITGLAYSYHSSPFLASIS--EDCTVAVLDAD 300 (357)
T ss_dssp EEEEEECTTSTTEEEEEESSSCEEEEESSCG------GGCEEECCCSSCEEEEEECSSSSCCEEEEE--TTSCEEEECTT
T ss_pred ccchhhhhcccceEEEeecccceeEEECCCC------cEeEEEeccceeEEEEEEcCCCCCEEEEEe--CCCEEEEEECC
Confidence 999999997 568999999999999999988 788899999999999999999988888874 89999999999
Q ss_pred CCceeEEEcCCCCeEEEEEcC-CCCeEEEEEecCCCeEEEEECCCCceE
Q psy4876 500 SGACLDSIDTKSQVCALLWNS-DYKELVSAHGFAQNQLIIWKYPSLVKV 547 (609)
Q Consensus 500 t~~~~~~~~~~~~v~sl~~s~-~g~~l~~~sG~~dg~I~Iwd~~~~~~~ 547 (609)
+++++..+.+...|.+++|+| ++.+|+++ +.|+.|++|++++....
T Consensus 301 ~~~~~~~~~H~~~V~~vafsP~d~~~l~s~--s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 301 FSEVFRDLSHRDFVTGVAWSPLDHSKFTTV--GWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp SCEEEEECCCSSCEEEEEECSSSTTEEEEE--ETTSCEEEEECC-----
T ss_pred CCcEeEECCCCCCEEEEEEeCCCCCEEEEE--cCCCeEEEEECCCCCcc
Confidence 999998887778999999998 78888884 48999999999765443
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=318.94 Aligned_cols=268 Identities=11% Similarity=0.115 Sum_probs=211.4
Q ss_pred EEEcCCeEEEEeCCCCCCCceEEecCCcccccccccccccccee--eeeeec-CCCCeEEEEEccC------CCEEEEEe
Q psy4876 284 AVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAID--HLMDLE-GNENVCSVAWIQE------GYMLGVGT 354 (609)
Q Consensus 284 a~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~-h~~~V~~v~~spd------g~~Lasgs 354 (609)
+++.|++|+|||+.+ +... ....+. |.+.|.+|+|+|+ +.+||+|+
T Consensus 178 S~s~D~tI~iWd~~~-------------------------~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s 232 (524)
T 2j04_B 178 KEKHSSCIQIFKMNT-------------------------STLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVS 232 (524)
T ss_dssp ----CEEEEEEEEET-------------------------TTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEE
T ss_pred cCCCCceEEEEEccC-------------------------CCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEe
Confidence 356788999999877 3321 123344 6789999999997 57999999
Q ss_pred CCCeEEEEeCCCCee-----------EEEecCCCCceEEEEec-CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 355 SLGTVQLWDVSAKKK-----------CRTMDGHDVRVGALAWN-TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 355 ~dg~I~iwd~~~~~~-----------~~~l~~h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
.||+|+|||+..+.. ...+.+|...|.+++|+ +..|++|+.||+|++||++++......+.+|...|.
T Consensus 233 ~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~ 312 (524)
T 2j04_B 233 QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYIL 312 (524)
T ss_dssp TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEE
T ss_pred cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEE
Confidence 999999999986632 24778899999999994 579999999999999999976555667889999999
Q ss_pred EE--EEccCC-CEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcc--cEEEEEEcCCCCcEEEEEeccCCCeEEEEE
Q psy4876 423 GL--KWSPDG-RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA--AVKAIAWCPWSPNVLASGGGTADRHIYFWN 497 (609)
Q Consensus 423 ~l--~~spdg-~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~~~~llasggGs~Dg~I~iwd 497 (609)
+| +|+++| .+||+|+.|++|+|||++++ +.+..+.+|.. .|.+++|+|++.. +++++ .|+.|++||
T Consensus 313 sv~~~~s~~g~~~laS~S~D~tvklWD~~~~------~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~--~d~tv~lwd 383 (524)
T 2j04_B 313 SVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI------ATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSD--GASSLRAVP 383 (524)
T ss_dssp EEEEECCTTSCCEEEEEETTSEEEEECGGGH------HHHCEEEEECSCCSCCCEEEETTTTE-EEEEC--SSSEEEEEE
T ss_pred EEEEEcCCCCCeEEEEeccCCeEEEEECCCC------CcccccccccccCcccceEeCCCcCe-EEEeC--CCCcEEEEE
Confidence 99 578888 89999999999999999876 55555656653 5789999999864 55553 799999999
Q ss_pred CCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC---------------------------------
Q psy4876 498 VSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS--------------------------------- 543 (609)
Q Consensus 498 ~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~--------------------------------- 543 (609)
++++.++..+..+ ..|.+++|+|+++.|++ |+.|++|+|||...
T Consensus 384 ~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~S--gs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~ 461 (524)
T 2j04_B 384 SRAAFAVHPLVSRETTITAIGVSRLHPMVLA--GSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRID 461 (524)
T ss_dssp TTCTTCCEEEEECSSCEEEEECCSSCCBCEE--EETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEEC
T ss_pred CcccccceeeecCCCceEEEEeCCCCCeEEE--EECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEcc
Confidence 9999987777654 58999999999999988 55899999887421
Q ss_pred -----------CceEEEEeCCCCCEEEEEEeCCCC---EEEEEECCCCEEEEEcCCCc
Q psy4876 544 -----------LVKVAELHGHSARVLNLAMSPDET---TVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 544 -----------~~~~~~l~~h~~~V~~l~~spdg~---~L~s~s~Dg~I~iWdl~~~~ 587 (609)
+..+..+.+|...|.+|+|+|++. +|++|+.||+|+||++....
T Consensus 462 ~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 462 SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp CCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred CCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 112334567889999999999964 99999999999999997654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-33 Score=294.08 Aligned_cols=283 Identities=13% Similarity=0.200 Sum_probs=235.4
Q ss_pred eEEEEEecCCC---eEEEEcCCeEEEEeC----CCCCCCceEEecCCccccccccccccccceeeeeee--------c-C
Q psy4876 271 YLNLIDWSHFN---VLAVALGGSIYLWNG----ESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL--------E-G 334 (609)
Q Consensus 271 ~v~~l~wsp~~---lla~s~dg~I~iWd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~-h 334 (609)
.|.+++|+|++ +++++.|+.|++|++ .++... +... ....... . |
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------------------~~~~-~~~~~~~~~~~~~~~~~~ 107 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKY------------------WKLT-IIAELRHPFALSASSGKT 107 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------C------------------EEEE-EEEEEECCCCCC------
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccc------------------cccc-ccccccccccccccccCC
Confidence 47889999984 455778899999999 662100 0000 1111111 1 4
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
.+.|++++|+|++++|++|+.||.|+||| .+++.+..+.+|...|.+++| ++.+|++++.||.|++||+.++ ..+.
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~ 185 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG-TVMQ 185 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT-EEEE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC-cEEE
Confidence 67999999999999999999999999999 677889999999999999999 5789999999999999999987 4677
Q ss_pred EEccCCCC---------------eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCC
Q psy4876 413 LLQNHTQE---------------VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW 477 (609)
Q Consensus 413 ~~~~h~~~---------------V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 477 (609)
.+..+... +.+++|++++ .+++++.||.|++||+..+ ..+..+..|...|.+++|+|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~------~~~~~~~~~~~~i~~~~~~~~ 258 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEK------TPTGKLIGHHGPISVLEFNDT 258 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCS------SCSEEECCCSSCEEEEEEETT
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCC------ceeeeeccCCCceEEEEECCC
Confidence 77777766 9999999985 5888999999999999987 677888899999999999998
Q ss_pred CCcEEEEEeccCCCeEEEEECCCCceeEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCC
Q psy4876 478 SPNVLASGGGTADRHIYFWNVSSGACLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSAR 556 (609)
Q Consensus 478 ~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~ 556 (609)
+. ++++++ .|+.|++||+.+++.+..+.. ...+.+++|+|++ .+++ +..|+.|++||+.+++.+..+..|...
T Consensus 259 ~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~ 332 (425)
T 1r5m_A 259 NK-LLLSAS--DDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVIS--CSMDGSVRLWSLKQNTLLALSIVDGVP 332 (425)
T ss_dssp TT-EEEEEE--TTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEE--EETTSEEEEEETTTTEEEEEEECTTCC
T ss_pred CC-EEEEEc--CCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEE--EeCCCcEEEEECCCCcEeEecccCCcc
Confidence 86 555653 799999999999998888874 4689999999999 7666 448999999999999999999999999
Q ss_pred EEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 557 VLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 557 V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
|.+++|+|++.+|++++.||.|++||+....
T Consensus 333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 9999999999999999999999999998765
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=287.85 Aligned_cols=251 Identities=17% Similarity=0.275 Sum_probs=223.3
Q ss_pred eeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcC
Q psy4876 329 LMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVR 405 (609)
Q Consensus 329 l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~ 405 (609)
..++. |.+.|++++|+|++.+||+|+.||.|+|||..+++....+..|...|.+++| ++..|++|+.|+.|.+|++.
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~ 136 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT 136 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence 34555 9999999999999999999999999999999999999999999999999999 57999999999999999986
Q ss_pred CCC-----eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC-C
Q psy4876 406 SRD-----HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS-P 479 (609)
Q Consensus 406 ~~~-----~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~ 479 (609)
... .....+.+|...|.+++|+|++..|++|+.|++|++||++++ +.+..+.+|...|.+++|+|.. .
T Consensus 137 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~g 210 (354)
T 2pbi_B 137 FDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG------QLLQSFHGHGADVLCLDLAPSETG 210 (354)
T ss_dssp CCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECCCSSC
T ss_pred ccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC------eEEEEEcCCCCCeEEEEEEeCCCC
Confidence 431 245667789999999999999999999999999999999988 7888999999999999999863 3
Q ss_pred cEEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC--CCC
Q psy4876 480 NVLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH--SAR 556 (609)
Q Consensus 480 ~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h--~~~ 556 (609)
.++++|+ .|+.|++||+++++++..+..+ ..|.+++|+|++.+++++ +.|+.|++||+.....+..+..+ ...
T Consensus 211 ~~l~sgs--~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~--s~D~~v~lwd~~~~~~~~~~~~~~~~~~ 286 (354)
T 2pbi_B 211 NTFVSGG--CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASG--SDDATCRLYDLRADREVAIYSKESIIFG 286 (354)
T ss_dssp CEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE--ETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred CEEEEEe--CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEE--eCCCeEEEEECCCCcEEEEEcCCCcccc
Confidence 6777774 8999999999999999998765 589999999999999984 48999999999998887777543 357
Q ss_pred EEEEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 557 VLNLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 557 V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
+.+++|+|+|.+|++|+.|++|++||+..+...
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~ 319 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV 319 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSEE
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCCceE
Confidence 899999999999999999999999999876644
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=300.41 Aligned_cols=274 Identities=21% Similarity=0.418 Sum_probs=233.7
Q ss_pred eEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCE
Q psy4876 271 YLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYM 349 (609)
Q Consensus 271 ~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~ 349 (609)
.|.+++|..+.+++++.||.|++||+.+ +.. +..+. |.+.|.+++| ++++
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~-------------------------~~~--~~~~~~h~~~v~~l~~--~~~~ 185 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNT-------------------------LEC--KRILTGHTGSVLCLQY--DERV 185 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSS-------------------------CCE--EEEECCCSSCEEEEEC--CSSE
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCC-------------------------CeE--EEEEcCCCCcEEEEEE--CCCE
Confidence 4778888655688899999999999987 443 34455 8999999999 7899
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCee--EEEEccCCCCeEEEEEc
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHK--VALLQNHTQEVCGLKWS 427 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~--~~~~~~h~~~V~~l~~s 427 (609)
|++|+.||.|++||+.+++.+..+.+|...|.+++|++..|++|+.||.|++||+.+.... ...+.+|...|.+++|
T Consensus 186 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp EEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence 9999999999999999999999999999999999999999999999999999999876532 2677899999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEE
Q psy4876 428 PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI 507 (609)
Q Consensus 428 pdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~ 507 (609)
++++|++|+.||.|++||++++ +.+..+.+|...|.+++|++ .++++|+ .|+.|++||+++++++..+
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~---~~l~~g~--~dg~i~iwd~~~~~~~~~~ 332 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTSTC------EFVRTLNGHKRGIACLQYRD---RLVVSGS--SDNTIRLWDIECGACLRVL 332 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEEET---TEEEEEE--TTSCEEEEETTTCCEEEEE
T ss_pred -CCCEEEEEeCCCeEEEEECCcC------cEEEEEcCCCCcEEEEEeCC---CEEEEEe--CCCeEEEEECCCCCEEEEE
Confidence 7889999999999999999988 78888999999999999953 4777764 8999999999999999999
Q ss_pred cCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc---------eEEEEeCCCCCEEEEEEeCCCCEEEEEECCCC
Q psy4876 508 DTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV---------KVAELHGHSARVLNLAMSPDETTVLSAGADET 577 (609)
Q Consensus 508 ~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~---------~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~ 577 (609)
..+ ..|.+++| ++.++++ |+.||.|+|||+.++. .+..+.+|.+.|.+++| ++.+|++++.||+
T Consensus 333 ~~h~~~v~~~~~--~~~~l~s--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 333 EGHEELVRCIRF--DNKRIVS--GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDT 406 (435)
T ss_dssp CCCSSCEEEEEC--CSSEEEE--EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSE
T ss_pred eCCcCcEEEEEe--cCCEEEE--EeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCE
Confidence 865 58999998 7788888 4589999999987655 78889999999999999 7889999999999
Q ss_pred EEEEEcCCCccchhh
Q psy4876 578 LRLWKIFEKVKSKKK 592 (609)
Q Consensus 578 I~iWdl~~~~~~~k~ 592 (609)
|++||+.+.......
T Consensus 407 i~iwd~~~~~~~~~~ 421 (435)
T 1p22_A 407 ILIWDFLNDPAAQAE 421 (435)
T ss_dssp EEEEC----------
T ss_pred EEEEECCCCCCcccC
Confidence 999999887655443
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-33 Score=288.22 Aligned_cols=255 Identities=21% Similarity=0.357 Sum_probs=214.1
Q ss_pred ceeeeeeec-CCC-CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEE---EecCCCCceEEEEe--cCCEEEEEecCC
Q psy4876 325 AIDHLMDLE-GNE-NVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCR---TMDGHDVRVGALAW--NTYILSSGSRCG 397 (609)
Q Consensus 325 ~~~~l~~~~-h~~-~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~---~l~~h~~~V~~l~~--~~~~L~sgs~dg 397 (609)
.+..+.++. |.+ .|.+++|+|+|++||+|+.||.|+|||+.++.... ...+|...|.+++| ++.+|++|+.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 345566666 766 99999999999999999999999999998876432 23689999999999 578999999999
Q ss_pred eEEEEEcCCCC-eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcC
Q psy4876 398 NIVHHDVRSRD-HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476 (609)
Q Consensus 398 ~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 476 (609)
.|++||+.... ..+..+.+|...|.+++|+|++++|++|+.|+.|++||+..+.. ...+..+.+|...|.+++|+|
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE---YECVSVLNSHTQDVKHVVWHP 160 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC---EEEEEEECCCCSCEEEEEECS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC---eEEEEEecCcCCCeEEEEECC
Confidence 99999998764 35678899999999999999999999999999999999987621 135667889999999999999
Q ss_pred CCCcEEEEEeccCCCeEEEEECCCCc--eeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC----------
Q psy4876 477 WSPNVLASGGGTADRHIYFWNVSSGA--CLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS---------- 543 (609)
Q Consensus 477 ~~~~llasggGs~Dg~I~iwd~~t~~--~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~---------- 543 (609)
++. +|++|+ .|+.|++||+.++. +...+..+ ..|.+++|+|++++|+++ +.|+.|+||+...
T Consensus 161 ~~~-~l~s~s--~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~--s~D~~v~iW~~~~~~~~~~~~~~ 235 (345)
T 3fm0_A 161 SQE-LLASAS--YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASC--SDDRTVRIWRQYLPGNEQGVACS 235 (345)
T ss_dssp SSS-CEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEE--ETTSCEEEEEEECTTCTTCCCCC
T ss_pred CCC-EEEEEe--CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEE--eCCCeEEEeccccCCCCccceee
Confidence 985 566653 89999999998875 34566554 589999999999999984 4899999999522
Q ss_pred -----CceEEEEeC-CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 544 -----LVKVAELHG-HSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 544 -----~~~~~~l~~-h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
..++..+.+ |...|.+++|+|++..|++++.|+.|++|++....
T Consensus 236 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 236 GSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp ---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred ccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 134455555 88999999999999999999999999999987654
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-33 Score=295.47 Aligned_cols=276 Identities=14% Similarity=0.172 Sum_probs=227.1
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
.+....|++++ +++++.|+.|+|||+.+ +.. ...+. |...|++++|+|++
T Consensus 99 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------------------------~~~--~~~~~~h~~~v~~~~~~~~~ 151 (420)
T 3vl1_A 99 YTAVDTAKLQMRRFILGTTEGDIKVLDSNF-------------------------NLQ--REIDQAHVSEITKLKFFPSG 151 (420)
T ss_dssp EEEEEEECSSSCEEEEEETTSCEEEECTTS-------------------------CEE--EEETTSSSSCEEEEEECTTS
T ss_pred ceEEEEEecCCCEEEEEECCCCEEEEeCCC-------------------------cce--eeecccccCccEEEEECCCC
Confidence 34556788875 66688899999999987 443 33444 89999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEcc---CCCCeE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQN---HTQEVC 422 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~---h~~~V~ 422 (609)
++|++|+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++++.||.|++||++++ ..+..+.. |...|.
T Consensus 152 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~v~ 230 (420)
T 3vl1_A 152 EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG-TTIHTFNRKENPHDGVN 230 (420)
T ss_dssp SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-EEEEEECBTTBTTCCEE
T ss_pred CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC-ceeEEeecCCCCCCCcc
Confidence 99999999999999999999999999999999999999 5789999999999999999987 46666664 334444
Q ss_pred ---------------------EEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCc
Q psy4876 423 ---------------------GLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPN 480 (609)
Q Consensus 423 ---------------------~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~ 480 (609)
+++|+|++++|++|+.||.|++||++++ ..+..+ ..|...|.+++|+|++..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~ 304 (420)
T 3vl1_A 231 SIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK------EQTIQLPSKFTCSCNSLTVDGNNAN 304 (420)
T ss_dssp EEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC------CEEEEECCTTSSCEEEEEECSSCTT
T ss_pred EEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC------ceeEEcccccCCCceeEEEeCCCCC
Confidence 4555789999999999999999999987 444444 458899999999999976
Q ss_pred EEEEEeccCCCeEEEEECCCCce-eEEEcC--CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC---------ceEE
Q psy4876 481 VLASGGGTADRHIYFWNVSSGAC-LDSIDT--KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL---------VKVA 548 (609)
Q Consensus 481 llasggGs~Dg~I~iwd~~t~~~-~~~~~~--~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~---------~~~~ 548 (609)
++++|+ .|+.|++||+++++. +..+.. ...+.++.| +++.+|++ ++.|+.|++|++... ....
T Consensus 305 ~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s--~~~d~~v~iw~~~~~~~~~~~~~~~~~~ 379 (420)
T 3vl1_A 305 YIYAGY--ENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVS--SGFDTSIKLDIISDPESERPAIEFETPT 379 (420)
T ss_dssp EEEEEE--TTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEE--ETTTEEEEEEEECCTTCCSCEECTTSCE
T ss_pred EEEEEe--CCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEE--ecCCccEEEEeccCCCCCccceeccCcc
Confidence 888874 899999999998754 566653 346777755 57777777 558999999998763 2233
Q ss_pred EEeCCCCCEEEEEEeCCCC---EEEEEECCCCEEEEEcCC
Q psy4876 549 ELHGHSARVLNLAMSPDET---TVLSAGADETLRLWKIFE 585 (609)
Q Consensus 549 ~l~~h~~~V~~l~~spdg~---~L~s~s~Dg~I~iWdl~~ 585 (609)
.+.+|.+.|.+++|+|++. .|++++.+|.+.+|++.+
T Consensus 380 ~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 380 FLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 4667889999999999999 888889999999999875
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=288.39 Aligned_cols=302 Identities=18% Similarity=0.231 Sum_probs=228.8
Q ss_pred ceeEEEEEecC-CC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSH-FN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp-~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~s 344 (609)
...|++++|+| ++ +++++.||.|+|||+.+............ ......... |...|.+++|+
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~v~~~~~~ 108 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV--------------CSIGRDHPDVHRYSVETVQWY 108 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE--------------EEECTTCTTCCSSCEEEEEEC
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc--------------ccccccccccCCCcEEEEEEc
Confidence 34689999999 75 66788899999999987322111000000 000000012 88999999999
Q ss_pred c-CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec-----CCEEEEEecCCeEEEEEcCCCCeeEEEEccCC
Q psy4876 345 Q-EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN-----TYILSSGSRCGNIVHHDVRSRDHKVALLQNHT 418 (609)
Q Consensus 345 p-dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~-----~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 418 (609)
| ++.+|++++.||.|++||+.+++.+..+. +...+.++.|. +.++++++.||.|++||++++ ..+..+..|.
T Consensus 109 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~~ 186 (408)
T 4a11_B 109 PHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-SCSHILQGHR 186 (408)
T ss_dssp TTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS-CCCEEECCCC
T ss_pred cCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc-ceeeeecCCC
Confidence 9 67899999999999999999999888887 77889999983 359999999999999999987 4678888999
Q ss_pred CCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCCCCC----------CccceEeecCCcccEEEEEEcCCCCcEEEEEec
Q psy4876 419 QEVCGLKWSPDGR-YLASGGNDNLLNIWSGVPGQHTF----------STQPIHSLSRHQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 419 ~~V~~l~~spdg~-~lasgs~Dg~I~iwd~~~~~~~~----------~~~~~~~~~~h~~~V~~l~~sp~~~~llasggG 487 (609)
..|.+++|+|++. +|++|+.||.|++||++.+.... ..........|...|.+++|+|++. ++++++
T Consensus 187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~- 264 (408)
T 4a11_B 187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-HLLTVG- 264 (408)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-EEEEEE-
T ss_pred CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC-EEEEec-
Confidence 9999999999998 59999999999999998763100 0011122257889999999999885 555553
Q ss_pred cCCCeEEEEECCCCceeEEEcCC------CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEE
Q psy4876 488 TADRHIYFWNVSSGACLDSIDTK------SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLA 561 (609)
Q Consensus 488 s~Dg~I~iwd~~t~~~~~~~~~~------~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~ 561 (609)
.|+.|++||+.+++....+... ..+........+..+++++ .++.|++||+.+++.+..+.+|...|.+++
T Consensus 265 -~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 341 (408)
T 4a11_B 265 -TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP--YGSTIAVYTVYSGEQITMLKGHYKTVDCCV 341 (408)
T ss_dssp -TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE--ETTEEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred -CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe--cCCEEEEEECcCCcceeeeccCCCeEEEEE
Confidence 7999999999998765544321 1222222233344555533 689999999999999999999999999999
Q ss_pred EeCCCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 562 MSPDETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 562 ~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
|+|++.+|++++.||.|++|++...+....
T Consensus 342 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 342 FQSNFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp EETTTTEEEEEETTSCEEEEEECC------
T ss_pred EcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 999999999999999999999998876544
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=280.14 Aligned_cols=250 Identities=19% Similarity=0.232 Sum_probs=218.5
Q ss_pred ceeeeeeec-CCCCeEEEEEccCC-CEEEEEeCCCeEEEEeCCC-----CeeEEEecCCCCceEEEEe--cCCEEEEEec
Q psy4876 325 AIDHLMDLE-GNENVCSVAWIQEG-YMLGVGTSLGTVQLWDVSA-----KKKCRTMDGHDVRVGALAW--NTYILSSGSR 395 (609)
Q Consensus 325 ~~~~l~~~~-h~~~V~~v~~spdg-~~Lasgs~dg~I~iwd~~~-----~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~ 395 (609)
.+....++. |.+.|++++|+|++ ++|++|+.|+.|++||+.. +..+..+.+|...|.+++| ++.+|++|+.
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 345556677 99999999999975 8999999999999999864 3457789999999999999 5789999999
Q ss_pred CCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEc
Q psy4876 396 CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWC 475 (609)
Q Consensus 396 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 475 (609)
|++|++||+.++ ..+..+.+|...|.+++|+|++.+|++|+.|+.|++||++. ..+..+.+|...|.+++|+
T Consensus 86 D~~v~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-------~~~~~~~~h~~~v~~~~~~ 157 (319)
T 3frx_A 86 DKTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-------QCLATLLGHNDWVSQVRVV 157 (319)
T ss_dssp TSEEEEEETTTT-EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-------CEEEEECCCSSCEEEEEEC
T ss_pred CCEEEEEECCCC-CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-------CeEEEEeccCCcEEEEEEc
Confidence 999999999987 57888999999999999999999999999999999999974 4678888999999999999
Q ss_pred CCCC-----cEEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE
Q psy4876 476 PWSP-----NVLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE 549 (609)
Q Consensus 476 p~~~-----~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~ 549 (609)
|... .++++++ .|+.|++||+.+++....+..+ ..|.+++|+|++++|+++ +.|+.|+|||+.+++.+..
T Consensus 158 ~~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~--~~dg~i~iwd~~~~~~~~~ 233 (319)
T 3frx_A 158 PNEKADDDSVTIISAG--NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA--GKDGEIMLWNLAAKKAMYT 233 (319)
T ss_dssp CC------CCEEEEEE--TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEE--ETTCEEEEEETTTTEEEEE
T ss_pred cCCCCCCCccEEEEEe--CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEE--eCCCeEEEEECCCCcEEEE
Confidence 9642 3677764 8999999999999988888755 589999999999999994 4899999999999999988
Q ss_pred EeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 550 LHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 550 l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
+..+ ..|.+++|+|++.+|++++.+ .+++|++.....
T Consensus 234 ~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~ 270 (319)
T 3frx_A 234 LSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYL 270 (319)
T ss_dssp EECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEE
T ss_pred ecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCee
Confidence 8754 689999999999999988765 599999976543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-32 Score=291.98 Aligned_cols=275 Identities=19% Similarity=0.283 Sum_probs=239.3
Q ss_pred EEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEE
Q psy4876 272 LNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYML 350 (609)
Q Consensus 272 v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~L 350 (609)
+.++.++++.+++++.||.|++||+.+ +. .+..+. |.+.|.+++|++++ +|
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~-------------------------~~--~~~~~~~h~~~V~~l~~~~~~-~l 176 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSIN-------------------------KK--FLLQLSGHDGGVWALKYAHGG-IL 176 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTT-------------------------TE--EEEEECCCSSCEEEEEECSTT-EE
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCC-------------------------Cc--EEEEEeCCCcCEEEEEEcCCC-EE
Confidence 567888777788899999999999987 44 444555 99999999999988 99
Q ss_pred EEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCCCe-----------------
Q psy4876 351 GVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSRDH----------------- 409 (609)
Q Consensus 351 asgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~~~----------------- 409 (609)
++|+.||.|++||+.+++.+..+.+|...|.+++|. +.+|++|+.||.|++||+.+...
T Consensus 177 ~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 256 (464)
T 3v7d_B 177 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 256 (464)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCG
T ss_pred EEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeecc
Confidence 999999999999999999999999999999999993 48999999999999999987642
Q ss_pred -----eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 410 -----KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 410 -----~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
.+..+.+|...|.++ ++++.+|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++. .+++
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~l~s 327 (464)
T 3v7d_B 257 EENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM------KCLYILSGHTDRIYSTIYDHERK-RCIS 327 (464)
T ss_dssp GGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEEETTTT-EEEE
T ss_pred CCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC------cEEEEecCCCCCEEEEEEcCCCC-EEEE
Confidence 255678899988877 577899999999999999999987 78889999999999999999885 5556
Q ss_pred EeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEe
Q psy4876 485 GGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMS 563 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~s 563 (609)
|+ .|+.|++||+.+++++..+..+ ..|.++.|+ +.++++ |+.||.|++||+.++.....+. |...+..++|+
T Consensus 328 g~--~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s--~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~ 400 (464)
T 3v7d_B 328 AS--MDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVS--AAADGSIRGWDANDYSRKFSYH-HTNLSAITTFY 400 (464)
T ss_dssp EE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEE--EETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEE
T ss_pred Ee--CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEE--EeCCCcEEEEECCCCceeeeec-CCCCccEEEEE
Confidence 53 8999999999999999999765 589999997 577777 4489999999999988776664 66778889999
Q ss_pred CCCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 564 PDETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 564 pdg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
+++.+|++++ ||.|++||+.+++...+
T Consensus 401 ~~~~~l~~~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 401 VSDNILVSGS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp ECSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred eCCCEEEEec-CCeEEEEECCCCcEEeh
Confidence 9999999998 99999999999887654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-32 Score=287.01 Aligned_cols=247 Identities=24% Similarity=0.421 Sum_probs=211.7
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCC------------------ceEEEEe--cCCEE
Q psy4876 331 DLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDV------------------RVGALAW--NTYIL 390 (609)
Q Consensus 331 ~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~------------------~V~~l~~--~~~~L 390 (609)
.+.|...|.+++|+|+|++||+|+ ++.++||++.+++.+..+..|.. .|.+++| ++.+|
T Consensus 60 ~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 60 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred ecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 345899999999999999999987 68999999999998888876542 4899999 57899
Q ss_pred EEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEE
Q psy4876 391 SSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVK 470 (609)
Q Consensus 391 ~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~ 470 (609)
++|+.||.|++||+.++ ..+..+.+|...|.+++|+|++.+|++|+.|+.|++||++++ +....+. +...+.
T Consensus 139 ~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~------~~~~~~~-~~~~v~ 210 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG------QCSLTLS-IEDGVT 210 (393)
T ss_dssp EEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------EEEEEEE-CSSCEE
T ss_pred EEEcCCCeEEEEECCCC-cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC------eeEEEEE-cCCCcE
Confidence 99999999999999986 577889999999999999999999999999999999999987 5555554 567799
Q ss_pred EEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc--------CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q psy4876 471 AIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID--------TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 471 ~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~--------~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~ 542 (609)
+++|+|....++++|+ .|+.|++||++++.++..+. +...|.+++|+|++++|++ |+.|+.|++||+.
T Consensus 211 ~~~~~~~~~~~l~~~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s--~s~d~~v~~wd~~ 286 (393)
T 1erj_A 211 TVAVSPGDGKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS--GSLDRSVKLWNLQ 286 (393)
T ss_dssp EEEECSTTCCEEEEEE--TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE--EETTSEEEEEEC-
T ss_pred EEEEECCCCCEEEEEc--CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE--EeCCCEEEEEECC
Confidence 9999995446777774 89999999999999887762 3358999999999999988 4589999999987
Q ss_pred CC------------ceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 543 SL------------VKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 543 ~~------------~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
+. .+...+.+|...|.+++|+|++.+|++|+.|+.|++||+.++....
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~ 346 (393)
T 1erj_A 287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 346 (393)
T ss_dssp --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 53 4456778999999999999999999999999999999998876543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-33 Score=296.39 Aligned_cols=291 Identities=11% Similarity=0.253 Sum_probs=224.6
Q ss_pred cCCceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CC-------
Q psy4876 266 IQNDYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GN------- 335 (609)
Q Consensus 266 ~~~~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~------- 335 (609)
+.+.-.|.+|+|+|++ +++++.||.|+|||+.+..... .........+..+. |.
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~----------------~~~~~~~~~~~~~~~h~~~~~~~~ 88 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQ----------------SHSRGEYNVYSTFQSHEPEFDYLK 88 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC---------------------CCCCCCEEEEEEEECCCCEEEGGG
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCC----------------cccccceeEecccccccccccccc
Confidence 3345679999999986 6668889999999998721000 00002223344454 66
Q ss_pred -----CCeEEEEEccCC--CEEEEEeCCCeEEEEeCCCCeeE--------------------------------------
Q psy4876 336 -----ENVCSVAWIQEG--YMLGVGTSLGTVQLWDVSAKKKC-------------------------------------- 370 (609)
Q Consensus 336 -----~~V~~v~~spdg--~~Lasgs~dg~I~iwd~~~~~~~-------------------------------------- 370 (609)
..|++++|+|++ .+|++++.||.|+|||+.++...
T Consensus 89 ~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (447)
T 3dw8_B 89 SLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASP 168 (447)
T ss_dssp TEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEE
T ss_pred cccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccc
Confidence 889999999998 89999999999999999764432
Q ss_pred -EE-ecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEE-------EccCCCCeEEEEEccCC-CEEEEEeC
Q psy4876 371 -RT-MDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVAL-------LQNHTQEVCGLKWSPDG-RYLASGGN 438 (609)
Q Consensus 371 -~~-l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~-------~~~h~~~V~~l~~spdg-~~lasgs~ 438 (609)
.. ..+|...|.+++| ++.+|++| .||.|++||++.....+.. +.+|...|.+++|+|++ .+|++|+.
T Consensus 169 ~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 247 (447)
T 3dw8_B 169 RRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS 247 (447)
T ss_dssp EEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET
T ss_pred eEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC
Confidence 12 3689999999999 57899998 7999999999854444442 55899999999999998 99999999
Q ss_pred CCcEEEEeCCCCCCCCCccceEeecCCcc------------cEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC-CceeE
Q psy4876 439 DNLLNIWSGVPGQHTFSTQPIHSLSRHQA------------AVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS-GACLD 505 (609)
Q Consensus 439 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~------------~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t-~~~~~ 505 (609)
||.|++||++++... ...+..+..|.. .|.+++|+|++. +|++++ . +.|++||+++ ++++.
T Consensus 248 dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~--~-~~v~iwd~~~~~~~~~ 321 (447)
T 3dw8_B 248 KGTIRLCDMRASALC--DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRD--Y-LSVKVWDLNMENRPVE 321 (447)
T ss_dssp TSCEEEEETTTCSSS--CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEE--S-SEEEEEETTCCSSCSC
T ss_pred CCeEEEEECcCCccc--cceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEee--C-CeEEEEeCCCCccccc
Confidence 999999999987311 012677777776 899999999885 555653 5 9999999997 88888
Q ss_pred EEcCCCC----------------eEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC-----------------
Q psy4876 506 SIDTKSQ----------------VCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG----------------- 552 (609)
Q Consensus 506 ~~~~~~~----------------v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~----------------- 552 (609)
.+..+.. +..++|+|++++|++ |+.||.|+|||+.+++.+. +.+
T Consensus 322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s--~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 398 (447)
T 3dw8_B 322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMT--GSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVC 398 (447)
T ss_dssp CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEE--ECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEE
T ss_pred eeeccccccccccccccccccccceEEEECCCCCEEEE--eccCCEEEEEEcCCCccee-eeecccccccccccCCcccc
Confidence 8876653 334999999999987 5689999999999887763 332
Q ss_pred ----------------CCCCEEEEEEeCCCCEEEEEECCCCEEEEEc
Q psy4876 553 ----------------HSARVLNLAMSPDETTVLSAGADETLRLWKI 583 (609)
Q Consensus 553 ----------------h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl 583 (609)
+...|.+++|+|++.+||+++.|+ +++|.-
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 399 ASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 345689999999999999998876 777764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=294.49 Aligned_cols=254 Identities=16% Similarity=0.259 Sum_probs=220.9
Q ss_pred eeeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEE
Q psy4876 326 IDHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHH 402 (609)
Q Consensus 326 ~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iw 402 (609)
......+. |.+.|++++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++| ++.+|++|+.|+.|++|
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF 135 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence 34455666 9999999999999999999999999999999999999999999999999999 57999999999999999
Q ss_pred EcCCCC------eeEEEEccCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-----cCCcccEE
Q psy4876 403 DVRSRD------HKVALLQNHTQEVCGLKWSPD-GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-----SRHQAAVK 470 (609)
Q Consensus 403 d~~~~~------~~~~~~~~h~~~V~~l~~spd-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-----~~h~~~V~ 470 (609)
|+.... .....+.+|...|.++.|+|+ +..|++|+.|++|++||+.++ +.+..+ .+|...|.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~------~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG------QRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC------CEEEEECCCSSSSCCSCEE
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC------cEEEEeecccCCCCccCeE
Confidence 997532 134567799999999999996 457999999999999999988 555555 67899999
Q ss_pred EEEEcCCCCcEEEEEeccCCCeEEEEECC-CCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE
Q psy4876 471 AIAWCPWSPNVLASGGGTADRHIYFWNVS-SGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVA 548 (609)
Q Consensus 471 ~l~~sp~~~~llasggGs~Dg~I~iwd~~-t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~ 548 (609)
+++|++.+..++++|+ .|+.|++||++ .+.++..+..+ ..|.+++|+|++.+|++ |+.|+.|+|||+.++..+.
T Consensus 210 ~~~~~~~~~~~l~sgs--~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s--~s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 210 SLSINSLNANMFISGS--CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT--GSDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp EEEECSSSCCEEEEEE--TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEE--ECSSSCEEEEETTTTEEEE
T ss_pred EEEeecCCCCEEEEEE--CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEE--EcCCCeEEEEECCCCcEEE
Confidence 9999986667888875 89999999998 55777777755 58999999999999998 5589999999999999988
Q ss_pred EEeCCCC-------CEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 549 ELHGHSA-------RVLNLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 549 ~l~~h~~-------~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
.+..+.. .|++++|+|+|.+|++|+.||.|++||+..++..
T Consensus 286 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~ 333 (380)
T 3iz6_a 286 VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV 333 (380)
T ss_dssp EECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEE
T ss_pred EecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceE
Confidence 8865432 4899999999999999999999999999876654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=295.80 Aligned_cols=285 Identities=18% Similarity=0.295 Sum_probs=234.3
Q ss_pred ceeEEEEEecCCC--eEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccce-eeeeeec-CCCCeEEEEE
Q psy4876 269 DYYLNLIDWSHFN--VLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAI-DHLMDLE-GNENVCSVAW 343 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~-h~~~V~~v~~ 343 (609)
.+..+.++++|+. +++ ++.||.|+||++... +.. ..+..+. |.+.|++++|
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~------------------------~~~~~~~~~~~~h~~~V~~~~~ 89 (402)
T 2aq5_A 34 TWDSGFCAVNPKFMALICEASGGGAFLVLPLGKT------------------------GRVDKNVPLVCGHTAPVLDIAW 89 (402)
T ss_dssp CCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCC------------------------EECCTTCCCBCCCSSCEEEEEE
T ss_pred ccCCCcEEECCCeEEEEEEEcCCCEEEEEECccC------------------------CCCCCCCceEecCCCCEEEEEe
Confidence 3445668899986 332 577999999999651 111 2233344 8999999999
Q ss_pred cc-CCCEEEEEeCCCeEEEEeCCCC-------eeEEEecCCCCceEEEEec--C-CEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 344 IQ-EGYMLGVGTSLGTVQLWDVSAK-------KKCRTMDGHDVRVGALAWN--T-YILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 344 sp-dg~~Lasgs~dg~I~iwd~~~~-------~~~~~l~~h~~~V~~l~~~--~-~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
+| ++++|++|+.||.|+|||+.++ +.+..+.+|...|.+++|+ + .+|++++.||.|++||++++ ..+.
T Consensus 90 ~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~ 168 (402)
T 2aq5_A 90 CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-AAVL 168 (402)
T ss_dssp CTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT-EEEE
T ss_pred CCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC-CccE
Confidence 99 8999999999999999999987 6688899999999999994 3 69999999999999999987 5677
Q ss_pred EE--ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-cCCccc-EEEEEEcCCCCcEEEEEe-c
Q psy4876 413 LL--QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQAA-VKAIAWCPWSPNVLASGG-G 487 (609)
Q Consensus 413 ~~--~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~-V~~l~~sp~~~~llasgg-G 487 (609)
.+ ..|...|.+++|+|++.+|++++.|+.|++||++++ +.+..+ ..|.+. +.+++|+|++ .++++|. +
T Consensus 169 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~ 241 (402)
T 2aq5_A 169 TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG------TVVAEKDRPHEGTRPVHAVFVSEG-KILTTGFSR 241 (402)
T ss_dssp EECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT------EEEEEEECSSCSSSCCEEEECSTT-EEEEEEECT
T ss_pred EEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC------ceeeeeccCCCCCcceEEEEcCCC-cEEEEeccC
Confidence 77 789999999999999999999999999999999987 677777 678776 8999999987 4666651 1
Q ss_pred cCCCeEEEEECCCCce---eEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce-EEEEeC--CCCCEEEEE
Q psy4876 488 TADRHIYFWNVSSGAC---LDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK-VAELHG--HSARVLNLA 561 (609)
Q Consensus 488 s~Dg~I~iwd~~t~~~---~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~-~~~l~~--h~~~V~~l~ 561 (609)
+.|+.|++||+++++. ...+.+...+.+++|+|++++++++ |..|+.|++||+.+++. +..+.. |...|.+++
T Consensus 242 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~ 320 (402)
T 2aq5_A 242 MSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLC-GKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMG 320 (402)
T ss_dssp TCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEE-ETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEE
T ss_pred CCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEE-EcCCCeEEEEEecCCCcceEeecccccCCcccceE
Confidence 3799999999998764 3333456789999999999999765 45799999999998874 444443 568999999
Q ss_pred EeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 562 MSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 562 ~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
|+|++.++++ .|+.+++|++.++..
T Consensus 321 ~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 321 YMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp ECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred Eeccccccee--cceeEEEEEcCCCcE
Confidence 9999998775 577999999987543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=288.23 Aligned_cols=245 Identities=20% Similarity=0.304 Sum_probs=204.7
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe--eEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK--KCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSR 407 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~ 407 (609)
|.+.|++++|+|+|++||+|+.|+.|+|||+.+++ .+..+.+|...|.+++|. +.+|++|+.|++|++||++++
T Consensus 12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~ 91 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG 91 (316)
T ss_dssp --CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS
T ss_pred ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC
Confidence 89999999999999999999999999999998774 567899999999999993 689999999999999999875
Q ss_pred C-eeEEEEccCCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC------
Q psy4876 408 D-HKVALLQNHTQEVCGLKWSPD--GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS------ 478 (609)
Q Consensus 408 ~-~~~~~~~~h~~~V~~l~~spd--g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~------ 478 (609)
. .....+.+|...|.+++|+|+ +.+|++|+.|+.|++||++.+.. ......+.+|...|.+++|+|+.
T Consensus 92 ~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 168 (316)
T 3bg1_A 92 TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ---WEVKKINNAHTIGCNAVSWAPAVVPGSLI 168 (316)
T ss_dssp CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC---EEECCBTTSSSSCBCCCEECCCCCC----
T ss_pred cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC---cceeeeeccccCCcceEEEccccCCcccc
Confidence 3 356678899999999999997 88999999999999999986521 12234567899999999999973
Q ss_pred ----------CcEEEEEeccCCCeEEEEECCCC---ceeEEEcCC-CCeEEEEEcCCC----CeEEEEEecCCCeEEEEE
Q psy4876 479 ----------PNVLASGGGTADRHIYFWNVSSG---ACLDSIDTK-SQVCALLWNSDY----KELVSAHGFAQNQLIIWK 540 (609)
Q Consensus 479 ----------~~llasggGs~Dg~I~iwd~~t~---~~~~~~~~~-~~v~sl~~s~~g----~~l~~~sG~~dg~I~Iwd 540 (609)
..+|++| +.|+.|++||++.+ +++..+..| ..|.+++|+|++ ..|++ ++.|+.|+||+
T Consensus 169 ~~~~~~~~~~~~~l~sg--s~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las--~s~D~~v~iw~ 244 (316)
T 3bg1_A 169 DHPSGQKPNYIKRFASG--GCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS--CSQDGRVFIWT 244 (316)
T ss_dssp --CCSCCCCCCCBEECC--BTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEE--EETTCEEEEEE
T ss_pred ccccccCccccceEEEe--cCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEE--EcCCCeEEEEE
Confidence 2467776 48999999999765 355556555 589999999987 67777 44899999999
Q ss_pred CCCCc----eEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 541 YPSLV----KVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 541 ~~~~~----~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
+.+.. ....+..|...|.+++|+|+|.+|++++.|++|+||+...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 245 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred ccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 87631 2234567899999999999999999999999999999864
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-32 Score=280.46 Aligned_cols=250 Identities=25% Similarity=0.413 Sum_probs=202.7
Q ss_pred eeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC--eeEEEe-cC-CCCceEEEEe--cCCEEEEEecCCeE
Q psy4876 327 DHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAK--KKCRTM-DG-HDVRVGALAW--NTYILSSGSRCGNI 399 (609)
Q Consensus 327 ~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~--~~~~~l-~~-h~~~V~~l~~--~~~~L~sgs~dg~I 399 (609)
..+..+. |.+.|.+++|+++ +||+|+.||.|+|||+..+ ..+..+ .+ |...|.+++| ++.+|++|+.|++|
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v 82 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV 82 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence 3455566 9999999999987 9999999999999999875 455666 44 9999999999 57899999999999
Q ss_pred EEEEcCCC------CeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEE
Q psy4876 400 VHHDVRSR------DHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473 (609)
Q Consensus 400 ~iwd~~~~------~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~ 473 (609)
++||+... ...+..+.+|...|.+++|+|+|++|++|+.|+.|++||++.... ..+.+..+.+|...|.+++
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~--~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE--EYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC--CCEEEEEECCCSSCEEEEE
T ss_pred EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC--CeEEEEEeccCCCceEEEE
Confidence 99998532 235677889999999999999999999999999999999954311 1245677889999999999
Q ss_pred EcCCCCcEEEEEeccCCCeEEEEECCCC--ceeEEEcCC-CCeEEEEEcCC--CCeEEEEEecCCCeEEEEECCCC----
Q psy4876 474 WCPWSPNVLASGGGTADRHIYFWNVSSG--ACLDSIDTK-SQVCALLWNSD--YKELVSAHGFAQNQLIIWKYPSL---- 544 (609)
Q Consensus 474 ~sp~~~~llasggGs~Dg~I~iwd~~t~--~~~~~~~~~-~~v~sl~~s~~--g~~l~~~sG~~dg~I~Iwd~~~~---- 544 (609)
|+|++. +|++|+ .|+.|++||+.++ +++..+..+ ..|.+++|+|+ +..|++ |+.|+.|+|||+..+
T Consensus 161 ~~p~~~-~l~s~s--~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s--~s~D~~v~iw~~~~~~~~~ 235 (330)
T 2hes_X 161 WHPSEA-LLASSS--YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCS--GSDDSTVRVWKYMGDDEDD 235 (330)
T ss_dssp ECSSSS-EEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEE--EETTSCEEEEEEEEECTTS
T ss_pred ECCCCC-EEEEEc--CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEE--EeCCCeEEEEEecCCCccc
Confidence 999874 667764 8999999999876 577777755 58999999999 556766 558999999998654
Q ss_pred ----ceEEEEeC-CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 545 ----VKVAELHG-HSARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 545 ----~~~~~l~~-h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
.....+.+ |...|.+++|++++ +|++++.||+|+||++.++
T Consensus 236 ~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 236 QQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp CEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred cceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 34445555 89999999999765 8999999999999998765
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-31 Score=285.31 Aligned_cols=272 Identities=21% Similarity=0.374 Sum_probs=238.8
Q ss_pred eEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCE
Q psy4876 271 YLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYM 349 (609)
Q Consensus 271 ~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~ 349 (609)
.+.++.++.+.+++++.||.|++||+.+ +. .+..+. |.+.|.+++|+ +++
T Consensus 121 v~~~~~~~g~~l~sg~~dg~i~vwd~~~-------------------------~~--~~~~~~~h~~~v~~~~~~--~~~ 171 (445)
T 2ovr_B 121 VITCLQFCGNRIVSGSDDNTLKVWSAVT-------------------------GK--CLRTLVGHTGGVWSSQMR--DNI 171 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTT-------------------------CC--EEEECCCCSSCEEEEEEE--TTE
T ss_pred cEEEEEEcCCEEEEEECCCcEEEEECCC-------------------------Cc--EEEEEcCCCCCEEEEEec--CCE
Confidence 3567888766688899999999999987 44 344555 89999999997 679
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccC
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPD 429 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 429 (609)
|++|+.||.|++||+.+++.+..+.+|...|.++.|++..|++|+.||.|++||+.++ ..+..+.+|...|.+++| +
T Consensus 172 l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~--~ 248 (445)
T 2ovr_B 172 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG-QCLHVLMGHVAAVRCVQY--D 248 (445)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSC-CEEEEEECCSSCEEEEEE--C
T ss_pred EEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCC-cEEEEEcCCcccEEEEEE--C
Confidence 9999999999999999999999999999999999999999999999999999999987 477888899999999999 7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC
Q psy4876 430 GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT 509 (609)
Q Consensus 430 g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~ 509 (609)
+.+|++|+.||.|++||++++ ..+..+.+|...|.+++| ++ ..+++|+ .|+.|++||+.+++++..+..
T Consensus 249 ~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~--~~-~~l~~~~--~d~~i~i~d~~~~~~~~~~~~ 317 (445)
T 2ovr_B 249 GRRVVSGAYDFMVKVWDPETE------TCLHTLQGHTNRVYSLQF--DG-IHVVSGS--LDTSIRVWDVETGNCIHTLTG 317 (445)
T ss_dssp SSCEEEEETTSCEEEEEGGGT------EEEEEECCCSSCEEEEEE--CS-SEEEEEE--TTSCEEEEETTTCCEEEEECC
T ss_pred CCEEEEEcCCCEEEEEECCCC------cEeEEecCCCCceEEEEE--CC-CEEEEEe--CCCeEEEEECCCCCEEEEEcC
Confidence 889999999999999999987 788889999999999999 44 4666664 899999999999999998876
Q ss_pred CC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC---CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 510 KS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG---HSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 510 ~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
+. .+.++.+ ++.++++ |+.||.|++||+.+++.+..+.+ |...|.+++|+ +.+|++|+.||.|++||+.+
T Consensus 318 ~~~~v~~~~~--~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 318 HQSLTSGMEL--KDNILVS--GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp CCSCEEEEEE--ETTEEEE--EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred CcccEEEEEE--eCCEEEE--EeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCC
Confidence 54 6777776 4667777 45899999999999999999986 88899999995 67999999999999999998
Q ss_pred Cccchh
Q psy4876 586 KVKSKK 591 (609)
Q Consensus 586 ~~~~~k 591 (609)
++....
T Consensus 392 ~~~~~~ 397 (445)
T 2ovr_B 392 GEFIRN 397 (445)
T ss_dssp CCEEEE
T ss_pred Cceeee
Confidence 876543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-32 Score=276.56 Aligned_cols=252 Identities=20% Similarity=0.334 Sum_probs=212.5
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC----eeEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAK----KKCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVR 405 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~ 405 (609)
|.+.|++++|+|++++||+|+.||.|+|||+.++ +....+.+|...|.+++|+ +.+|++|+.||.|++||++
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~ 89 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED 89 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC
Confidence 8999999999999999999999999999999876 5677888999999999993 7899999999999999998
Q ss_pred CCC--------eeEEEEccCCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCCCCCCccceE-------eecCCccc
Q psy4876 406 SRD--------HKVALLQNHTQEVCGLKWSPD--GRYLASGGNDNLLNIWSGVPGQHTFSTQPIH-------SLSRHQAA 468 (609)
Q Consensus 406 ~~~--------~~~~~~~~h~~~V~~l~~spd--g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~-------~~~~h~~~ 468 (609)
.+. ..+..+..|...|.+++|+|+ +.+|++++.||.|++||++++.......... ....|...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (351)
T 3f3f_A 90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQS 169 (351)
T ss_dssp TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCC
T ss_pred CCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccc
Confidence 763 457778899999999999999 9999999999999999999874322111100 11257888
Q ss_pred EEEEEEcCC--CCcEEEEEeccCCCeEEEEECCCCce--eEEEcC-CCCeEEEEEcCCC----CeEEEEEecCCCeEEEE
Q psy4876 469 VKAIAWCPW--SPNVLASGGGTADRHIYFWNVSSGAC--LDSIDT-KSQVCALLWNSDY----KELVSAHGFAQNQLIIW 539 (609)
Q Consensus 469 V~~l~~sp~--~~~llasggGs~Dg~I~iwd~~t~~~--~~~~~~-~~~v~sl~~s~~g----~~l~~~sG~~dg~I~Iw 539 (609)
+.+++|+|+ ...++++++ .|+.+.+|+...+.. +..+.. ...|.+++|+|++ .+|++ |+.||.|++|
T Consensus 170 ~~~~~~~p~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s--~~~dg~i~iw 245 (351)
T 3f3f_A 170 DFCLSWCPSRFSPEKLAVSA--LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT--GCKDGRIRIF 245 (351)
T ss_dssp CEEEEECCCSSSCCEEEEEE--TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE--EETTSCEEEE
T ss_pred eeEEEeccCCCCCcEEEEec--CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE--EcCCCeEEEE
Confidence 999999997 345676664 799998888887775 455554 4589999999998 67777 4489999999
Q ss_pred ECCCC----------------------------------------------ceEEEEeCCCCCEEEEEEeCCCCEEEEEE
Q psy4876 540 KYPSL----------------------------------------------VKVAELHGHSARVLNLAMSPDETTVLSAG 573 (609)
Q Consensus 540 d~~~~----------------------------------------------~~~~~l~~h~~~V~~l~~spdg~~L~s~s 573 (609)
|+..+ +.+..+.+|...|++++|+|++++|++++
T Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 325 (351)
T 3f3f_A 246 KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAG 325 (351)
T ss_dssp EEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEE
T ss_pred eCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEec
Confidence 98764 56777889999999999999999999999
Q ss_pred CCCCEEEEEcCCCccc
Q psy4876 574 ADETLRLWKIFEKVKS 589 (609)
Q Consensus 574 ~Dg~I~iWdl~~~~~~ 589 (609)
.||.|+||++..+...
T Consensus 326 ~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 326 DDGKVRLWKATYSNEF 341 (351)
T ss_dssp TTSCEEEEEECTTSCE
T ss_pred CCCcEEEEecCcCcch
Confidence 9999999999876543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-32 Score=311.29 Aligned_cols=279 Identities=18% Similarity=0.287 Sum_probs=243.6
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
.|.+++|+|++ +++++.||.|+|||+.+ +.. +..+. |...|.+++|+|++
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~-------------------------~~~--~~~~~~~~~~v~~~~~s~~~ 67 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYET-------------------------QVE--VRSIQVTETPVRAGKFIARK 67 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTT-------------------------TEE--EEEEECCSSCEEEEEEEGGG
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCC-------------------------Cce--EEEEecCCCcEEEEEEeCCC
Confidence 58999999997 66677899999999987 443 33444 89999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
++|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++++.||.|++||+.++......+.+|...|.+++
T Consensus 68 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~ 147 (814)
T 3mkq_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147 (814)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEE
Confidence 99999999999999999999999999999999999999 4789999999999999999987667788899999999999
Q ss_pred Ecc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC-cccEEEEEEcC--CCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 426 WSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH-QAAVKAIAWCP--WSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 426 ~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp--~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
|+| ++.+|++++.||.|++||+..+ .....+..+ ...+.+++|+| ++. +++++ +.|+.|++||+.++
T Consensus 148 ~~p~~~~~l~~~~~dg~v~vwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~--~~dg~i~~~d~~~~ 218 (814)
T 3mkq_A 148 FNPKDPSTFASGCLDRTVKVWSLGQS------TPNFTLTTGQERGVNYVDYYPLPDKP-YMITA--SDDLTIKIWDYQTK 218 (814)
T ss_dssp EETTEEEEEEEEETTSEEEEEETTCS------SCSEEEECCCTTCCCEEEECCSTTCC-EEEEE--CTTSEEEEEETTTT
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCC------cceeEEecCCCCCEEEEEEEECCCCC-EEEEE--eCCCEEEEEECCCC
Confidence 999 8999999999999999999877 445555544 48899999999 664 56665 38999999999999
Q ss_pred ceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCE-EEEEECCCCEE
Q psy4876 502 ACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETT-VLSAGADETLR 579 (609)
Q Consensus 502 ~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~-L~s~s~Dg~I~ 579 (609)
+++..+..+ ..|.+++|+|++.+++++ +.||.|++||..+++.+..+..|...|.+++|+|+|.. +++++.|+.+.
T Consensus 219 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 296 (814)
T 3mkq_A 219 SCVATLEGHMSNVSFAVFHPTLPIIISG--SEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFT 296 (814)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSEEEEE--ETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEE
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEEEEE--eCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEE
Confidence 999988755 589999999999999884 48999999999999999999999999999999999873 35555677899
Q ss_pred EEEcCCCc
Q psy4876 580 LWKIFEKV 587 (609)
Q Consensus 580 iWdl~~~~ 587 (609)
+|++....
T Consensus 297 ~~~~~~~~ 304 (814)
T 3mkq_A 297 VLSLGNDE 304 (814)
T ss_dssp EEECSCCS
T ss_pred EEEcCCCC
Confidence 99987654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-31 Score=285.51 Aligned_cols=270 Identities=20% Similarity=0.320 Sum_probs=240.3
Q ss_pred eeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCC
Q psy4876 270 YYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGY 348 (609)
Q Consensus 270 ~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~ 348 (609)
..|.+++|+++-+++++.|+.|++||+.+ +. .+..+. |...|.+++|+ +.
T Consensus 160 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~~-------------------------~~--~~~~~~~h~~~v~~~~~~--~~ 210 (445)
T 2ovr_B 160 GGVWSSQMRDNIIISGSTDRTLKVWNAET-------------------------GE--CIHTLYGHTSTVRCMHLH--EK 210 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTT-------------------------TE--EEEEECCCSSCEEEEEEE--TT
T ss_pred CCEEEEEecCCEEEEEeCCCeEEEEECCc-------------------------Cc--EEEEECCCCCcEEEEEec--CC
Confidence 35788999977788899999999999987 43 344555 88999999995 67
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEcc
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSP 428 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp 428 (609)
+|++|+.||.|++||+.+++.+..+.+|...|.+++|++.+|++|+.||.|++||+++. ..+..+.+|...|.+++|
T Consensus 211 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~-- 287 (445)
T 2ovr_B 211 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF-- 287 (445)
T ss_dssp EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT-EEEEEECCCSSCEEEEEE--
T ss_pred EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCC-cEeEEecCCCCceEEEEE--
Confidence 89999999999999999999999999999999999999999999999999999999986 578888999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc
Q psy4876 429 DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID 508 (609)
Q Consensus 429 dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~ 508 (609)
++.++++|+.|+.|++||++++ +.+..+.+|...+.++.+++ .++++|+ .|+.|++||+.+++++..+.
T Consensus 288 ~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~---~~l~~~~--~dg~i~vwd~~~~~~~~~~~ 356 (445)
T 2ovr_B 288 DGIHVVSGSLDTSIRVWDVETG------NCIHTLTGHQSLTSGMELKD---NILVSGN--ADSTVKIWDIKTGQCLQTLQ 356 (445)
T ss_dssp CSSEEEEEETTSCEEEEETTTC------CEEEEECCCCSCEEEEEEET---TEEEEEE--TTSCEEEEETTTCCEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEECCCC------CEEEEEcCCcccEEEEEEeC---CEEEEEe--CCCeEEEEECCCCcEEEEEc
Confidence 7899999999999999999988 78888999999999998854 4677764 89999999999999999987
Q ss_pred C----CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEE-----eCCCCCEEEEEEeCCCCEEEEEECCCC--
Q psy4876 509 T----KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL-----HGHSARVLNLAMSPDETTVLSAGADET-- 577 (609)
Q Consensus 509 ~----~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l-----~~h~~~V~~l~~spdg~~L~s~s~Dg~-- 577 (609)
. ...|.+++|+ +.++++ |+.||.|+|||+.+++.+..+ .+|.+.|++++|+|++.+|++|+.||+
T Consensus 357 ~~~~~~~~v~~~~~~--~~~l~s--~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~ 432 (445)
T 2ovr_B 357 GPNKHQSAVTCLQFN--KNFVIT--SSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 432 (445)
T ss_dssp STTSCSSCEEEEEEC--SSEEEE--EETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSC
T ss_pred cCCCCCCCEEEEEEC--CCEEEE--EeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCc
Confidence 4 4589999995 567777 458999999999999999888 468889999999999999999999998
Q ss_pred --EEEEEcCCC
Q psy4876 578 --LRLWKIFEK 586 (609)
Q Consensus 578 --I~iWdl~~~ 586 (609)
|.|||+...
T Consensus 433 ~~l~v~df~~~ 443 (445)
T 2ovr_B 433 TKLLVLDFDVD 443 (445)
T ss_dssp CEEEEEECCCC
T ss_pred cEEEEEECCCC
Confidence 999999865
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=323.94 Aligned_cols=277 Identities=21% Similarity=0.353 Sum_probs=243.9
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|.+++|+|++ +++++.||.|+|||+.+ +. .+..+. |.+.|.+++|+|
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~-------------------------~~--~~~~~~~h~~~v~~~~~s~ 667 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAET-------------------------GE--KLLDIKAHEDEVLCCAFSS 667 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------------------------CC--EEEEECCCSSCEEEEEECT
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCC-------------------------CC--EEEEeccCCCCEEEEEEec
Confidence 4569999999997 66688899999999987 44 344555 899999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCe
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEV 421 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 421 (609)
+|++||+|+.||.|+|||+.+++.+..+.+|...|.+++|. +.++++|+.||.|++||+.++ ..+..+.+|...|
T Consensus 668 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-~~~~~~~~h~~~v 746 (1249)
T 3sfz_A 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSV 746 (1249)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-SEEEEECCCSSCE
T ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc-chhheecCCCCCE
Confidence 99999999999999999999999999999999999999993 458999999999999999987 4778889999999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec-------------CCcccEEEEEEcCCCCcEEEEEecc
Q psy4876 422 CGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS-------------RHQAAVKAIAWCPWSPNVLASGGGT 488 (609)
Q Consensus 422 ~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-------------~h~~~V~~l~~sp~~~~llasggGs 488 (609)
.+++|+|++++|++|+.||.|++||+.++ .....+. .+...+.+++|+|++..+++ +
T Consensus 747 ~~~~~sp~~~~l~s~s~dg~v~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~--- 816 (1249)
T 3sfz_A 747 NHCRFSPDDELLASCSADGTLRLWDVRSA------NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV-A--- 816 (1249)
T ss_dssp EEEEECSSTTEEEEEESSSEEEEEEGGGT------EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEE-E---
T ss_pred EEEEEecCCCEEEEEECCCeEEEEeCCCC------cccceecccccccccCCccccccceEEEEEECCCCCEEEE-E---
Confidence 99999999999999999999999999877 3333221 12346889999999965554 4
Q ss_pred CCCeEEEEECCCCceeEEEc--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCC
Q psy4876 489 ADRHIYFWNVSSGACLDSID--TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDE 566 (609)
Q Consensus 489 ~Dg~I~iwd~~t~~~~~~~~--~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg 566 (609)
.++.+.+||+.++..+..+. +...+.+++|+|++..+++ +..++.|++||+.++..+..+.+|...|.+++|+|+|
T Consensus 817 ~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg 894 (1249)
T 3sfz_A 817 AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI--ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG 894 (1249)
T ss_dssp ETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEE--ECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred cCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEE--EeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCC
Confidence 27899999999999888775 3468999999999999998 5589999999999999999999999999999999999
Q ss_pred CEEEEEECCCCEEEEEcCC
Q psy4876 567 TTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 567 ~~L~s~s~Dg~I~iWdl~~ 585 (609)
.+|++++.||.|++|++..
T Consensus 895 ~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 895 SSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp SEEEEEETTSCEEEEEHHH
T ss_pred CEEEEEeCCCeEEEEEccc
Confidence 9999999999999999864
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-31 Score=276.25 Aligned_cols=248 Identities=21% Similarity=0.309 Sum_probs=206.0
Q ss_pred eeeeeec-CCCCeEEEEE-----cc-CCCEEEEEeCCCeEEEEeCCCC-------eeEEEecCCCCceEEEEe--cCCEE
Q psy4876 327 DHLMDLE-GNENVCSVAW-----IQ-EGYMLGVGTSLGTVQLWDVSAK-------KKCRTMDGHDVRVGALAW--NTYIL 390 (609)
Q Consensus 327 ~~l~~~~-h~~~V~~v~~-----sp-dg~~Lasgs~dg~I~iwd~~~~-------~~~~~l~~h~~~V~~l~~--~~~~L 390 (609)
.....+. |.+.|++++| ++ ++.+||+|+.|+.|+|||+... .....+.+|...|.+++| ++.+|
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 3445566 9999999999 76 8999999999999999999743 456788999999999999 47899
Q ss_pred EEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee---cCCcc
Q psy4876 391 SSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL---SRHQA 467 (609)
Q Consensus 391 ~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~---~~h~~ 467 (609)
++|+.|++|++||++++ ..+..+.+|...|.+++|+|++++|++|+.|+.|++||+... ..... ..|..
T Consensus 92 ~s~s~D~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-------~~~~~~~~~~~~~ 163 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTG-TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-------CKFSSAEKENHSD 163 (343)
T ss_dssp EEEETTSEEEEEETTSS-CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-------EEEECCTTTSCSS
T ss_pred EEEcCCCcEEEEECCCC-cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-------ceeeeecccCCCc
Confidence 99999999999999987 477888999999999999999999999999999999999743 22222 36889
Q ss_pred cEEEEEEcCCCC---------cEEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEE
Q psy4876 468 AVKAIAWCPWSP---------NVLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLI 537 (609)
Q Consensus 468 ~V~~l~~sp~~~---------~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~ 537 (609)
.|.+++|+|++. .++++++ .|+.|++||. .+.....+..+ ..|.+++|+|++++|++ |+.|+.|+
T Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s--gs~dg~v~ 238 (343)
T 2xzm_R 164 WVSCVRYSPIMKSANKVQPFAPYFASVG--WDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT--GGKDKKLL 238 (343)
T ss_dssp CEEEEEECCCCCSCSCCCSSCCEEEEEE--TTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEE--EETTCEEE
T ss_pred eeeeeeeccccccccccCCCCCEEEEEc--CCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEE--EcCCCeEE
Confidence 999999999873 4677764 8999999994 45666666544 58999999999999998 44899999
Q ss_pred EEECCC-CceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 538 IWKYPS-LVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 538 Iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
|||+.. ......+ .+...|.+++|+|++.+|+ ++.|+.|++|++.+....
T Consensus 239 iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~ 289 (343)
T 2xzm_R 239 IWDILNLTYPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKA 289 (343)
T ss_dssp EEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSC
T ss_pred EEECCCCcccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCC
Confidence 999944 3444444 3556799999999998776 456889999999876543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=286.86 Aligned_cols=286 Identities=14% Similarity=0.116 Sum_probs=209.1
Q ss_pred ceeEEEEEecCCC-eEE-EEcC-------CeEEEEeCCCCCCCceEEecCCccccccccccccccceee--eeeec-CCC
Q psy4876 269 DYYLNLIDWSHFN-VLA-VALG-------GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDH--LMDLE-GNE 336 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla-~s~d-------g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~-h~~ 336 (609)
.|.|.+++|+|++ +|+ ||.| +.|+||++........ ..... ...+. |..
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~ 74 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK-------------------EQFHILSEFALEDNDD 74 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHH-------------------HHEEEEEEEECCTTSC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCccee-------------------eeeeeeeEEEccCCCC
Confidence 4569999999997 444 4433 3599999876211100 11111 22344 777
Q ss_pred CeEEEEEccCCCEEEEEe-----------CCCeEEEEeCCCCee----EEEe-----cCCCCceEEEEe--cCCEEEEE-
Q psy4876 337 NVCSVAWIQEGYMLGVGT-----------SLGTVQLWDVSAKKK----CRTM-----DGHDVRVGALAW--NTYILSSG- 393 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs-----------~dg~I~iwd~~~~~~----~~~l-----~~h~~~V~~l~~--~~~~L~sg- 393 (609)
.|.+++++ ++.+++|. .|+.+++|++..... +... ..+...+.+++| +|.+|+++
T Consensus 75 ~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as 152 (365)
T 4h5i_A 75 SPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIAS 152 (365)
T ss_dssp CCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEE
T ss_pred ceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEE
Confidence 88887764 55676654 467899999865432 1222 124456888999 57776644
Q ss_pred -ecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEE
Q psy4876 394 -SRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI 472 (609)
Q Consensus 394 -s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l 472 (609)
+.|++|++||+.+.. .+..+. |...|.+++|+|||++|++++.| .+.+|+..++.. ........|...|.++
T Consensus 153 ~~~d~~i~iwd~~~~~-~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~----~~~~~~~~~~~~v~~v 225 (365)
T 4h5i_A 153 SKVPAIMRIIDPSDLT-EKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSC----IARKTDFDKNWSLSKI 225 (365)
T ss_dssp SCSSCEEEEEETTTTE-EEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCE----EEEECCCCTTEEEEEE
T ss_pred CCCCCEEEEeECCCCc-EEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcc----eeeeecCCCCCCEEEE
Confidence 478999999999874 555554 77889999999999999999865 566666666521 1223445688899999
Q ss_pred EEcCCCCcEEEEEeccCCC----eEEEEECCCCcee----EEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q psy4876 473 AWCPWSPNVLASGGGTADR----HIYFWNVSSGACL----DSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS 543 (609)
Q Consensus 473 ~~sp~~~~llasggGs~Dg----~I~iwd~~t~~~~----~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~ 543 (609)
+|+|++..+++.+ .|+ .+++||+..+... ..+.. ...|++++|+|+|++|++ |+.|+.|+|||+.+
T Consensus 226 ~fspdg~~l~~~s---~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las--gs~D~~V~iwd~~~ 300 (365)
T 4h5i_A 226 NFIADDTVLIAAS---LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL--ASNDNSIALVKLKD 300 (365)
T ss_dssp EEEETTEEEEEEE---ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE--EETTSCEEEEETTT
T ss_pred EEcCCCCEEEEEe---cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE--EcCCCEEEEEECCC
Confidence 9999986555443 343 6889998766542 23333 458999999999999998 45899999999999
Q ss_pred CceEEEE-eCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 544 LVKVAEL-HGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 544 ~~~~~~l-~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
++++..+ .+|...|++|+|+|||++||||+.|++|+||++....
T Consensus 301 ~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 301 LSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp TEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred CcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 9999886 7899999999999999999999999999999996543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=275.35 Aligned_cols=273 Identities=15% Similarity=0.129 Sum_probs=228.0
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccc--eeeeeeecCCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRA--IDHLMDLEGNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~h~~~V~~v~~s 344 (609)
.-.|.+++|+|++ +++++.|+.|+||++.+ +. ........|...|.+++|+
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~-------------------------~~~~~~~~~~~~~~~~v~~~~~~ 65 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDI-------------------------QAKNVDLLQSLRYKHPLLCCNFI 65 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEET-------------------------TTTEEEEEEEEECSSCEEEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCC-------------------------CCccccceeeeecCCceEEEEEC
Confidence 3458999999985 67788899999999987 33 1112222488999999999
Q ss_pred cCCC-EEEEEeCCCeEEEEeC-CCCeeEEEecC--CCCceEEEEec-CCEEEEEecCCeEEEEEcCC---------CCee
Q psy4876 345 QEGY-MLGVGTSLGTVQLWDV-SAKKKCRTMDG--HDVRVGALAWN-TYILSSGSRCGNIVHHDVRS---------RDHK 410 (609)
Q Consensus 345 pdg~-~Lasgs~dg~I~iwd~-~~~~~~~~l~~--h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~---------~~~~ 410 (609)
|+++ +|++|+.||.|++||+ .+++ ...+.+ |...|.+++|+ +.+|++++.||.|++||+++ .. .
T Consensus 66 ~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~ 143 (342)
T 1yfq_A 66 DNTDLQIYVGTVQGEILKVDLIGSPS-FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL-N 143 (342)
T ss_dssp ESSSEEEEEEETTSCEEEECSSSSSS-EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES-C
T ss_pred CCCCcEEEEEcCCCeEEEEEeccCCc-eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCC-e
Confidence 9999 9999999999999999 7764 477888 99999999997 79999999999999999986 42 3
Q ss_pred EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CCCCCCccceEeecCCcccEEEEEEcC-CCCcEEEEEecc
Q psy4876 411 VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVP-GQHTFSTQPIHSLSRHQAAVKAIAWCP-WSPNVLASGGGT 488 (609)
Q Consensus 411 ~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~-~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~llasggGs 488 (609)
+..+. |...|.+++|++++ +++++.|+.|++||++. +.. ........|...|.+++|+| ++. ++++++
T Consensus 144 ~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~-- 213 (342)
T 1yfq_A 144 SNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD----NGTIEESGLKYQIRDVALLPKEQE-GYACSS-- 213 (342)
T ss_dssp SSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC----CCEEEECSCSSCEEEEEECSGGGC-EEEEEE--
T ss_pred eeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc----cceeeecCCCCceeEEEECCCCCC-EEEEEe--
Confidence 33444 88999999999987 99999999999999997 521 23344556888999999999 875 566653
Q ss_pred CCCeEEEEECCCC------ceeEEEcCCC----------CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC
Q psy4876 489 ADRHIYFWNVSSG------ACLDSIDTKS----------QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 489 ~Dg~I~iwd~~t~------~~~~~~~~~~----------~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~ 552 (609)
.|+.|++||+... +....+..+. .|.+++|+|++++|+++ ..||.|++||+.+++.+..+.+
T Consensus 214 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~ 291 (342)
T 1yfq_A 214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA--GSDGIISCWNLQTRKKIKNFAK 291 (342)
T ss_dssp TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEE--ETTSCEEEEETTTTEEEEECCC
T ss_pred cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEe--cCCceEEEEcCccHhHhhhhhc
Confidence 7999999999876 7777776542 89999999999999984 4899999999999999999999
Q ss_pred C-CCCEEEEEEeCCCCEEEEEECCCC-EEEEE
Q psy4876 553 H-SARVLNLAMSPDETTVLSAGADET-LRLWK 582 (609)
Q Consensus 553 h-~~~V~~l~~spdg~~L~s~s~Dg~-I~iWd 582 (609)
| ...|.+++ |++.+|++++.||+ .+.|.
T Consensus 292 ~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 292 FNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred ccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 8 99999999 99999999999998 44444
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=278.15 Aligned_cols=245 Identities=21% Similarity=0.330 Sum_probs=209.7
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCC--CCeeEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVS--AKKKCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSR 407 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~--~~~~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~ 407 (609)
|.+.|++++|+|++++||+|+.||.|+|||+. +++.+..+.+|...|.+++|. +.+|++|+.||.|++||+.++
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 89 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 89 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT
T ss_pred CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC
Confidence 89999999999999999999999999999998 567788899999999999994 799999999999999999986
Q ss_pred C-eeEEEEccCCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCC-------
Q psy4876 408 D-HKVALLQNHTQEVCGLKWSPD--GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW------- 477 (609)
Q Consensus 408 ~-~~~~~~~~h~~~V~~l~~spd--g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~------- 477 (609)
. ..+..+..|...|.+++|+|+ +.+|++++.|+.|++||+..... .....+..|...|.+++|+|.
T Consensus 90 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 165 (379)
T 3jrp_A 90 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT----TSPIIIDAHAIGVNSASWAPATIEEDGE 165 (379)
T ss_dssp EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC----CCEEEEECCTTCEEEEEECCCC------
T ss_pred ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc----eeeEEecCCCCceEEEEEcCcccccccc
Confidence 4 256777889999999999999 99999999999999999987632 344567789999999999994
Q ss_pred -----CCcEEEEEeccCCCeEEEEECCCCc----eeEEEcC-CCCeEEEEEcCC---CCeEEEEEecCCCeEEEEECCCC
Q psy4876 478 -----SPNVLASGGGTADRHIYFWNVSSGA----CLDSIDT-KSQVCALLWNSD---YKELVSAHGFAQNQLIIWKYPSL 544 (609)
Q Consensus 478 -----~~~llasggGs~Dg~I~iwd~~t~~----~~~~~~~-~~~v~sl~~s~~---g~~l~~~sG~~dg~I~Iwd~~~~ 544 (609)
...++++++ .|+.|++||++++. ++..+.. ...|.+++|+|+ +.+|+++ +.|+.|+|||+.++
T Consensus 166 ~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~--~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 166 HNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV--SQDRTCIIWTQDNE 241 (379)
T ss_dssp ----CTTCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE--ETTSCEEEEEESST
T ss_pred ccCCCCCCEEEEEe--CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE--eCCCEEEEEeCCCC
Confidence 235666664 89999999998765 3344554 458999999999 7888884 48999999999886
Q ss_pred c---eEEEE--eCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 545 V---KVAEL--HGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 545 ~---~~~~l--~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
. ....+ ..|...|++++|+|+|++|++++.||.|++|++...
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 4 22222 348899999999999999999999999999999843
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=270.72 Aligned_cols=242 Identities=19% Similarity=0.341 Sum_probs=200.5
Q ss_pred eeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
..|++++|+|++ +++++.|+.|+|||+.. .....+..+. |.+.|.+++|+++
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~-------------------------~~~~~~~~l~gH~~~V~~v~~s~~ 64 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEG-------------------------ETHKLIDTLTGHEGPVWRVDWAHP 64 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCS-------------------------SCBCCCEEECCCSSCEEEEEECCG
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCC-------------------------CCcEEEEEEccccCCeEEEEecCC
Confidence 458999999986 77789999999999976 3334555666 9999999999864
Q ss_pred --CCEEEEEeCCCeEEEEeCCCCe--eEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCCCe-eEEEEccC
Q psy4876 347 --GYMLGVGTSLGTVQLWDVSAKK--KCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSRDH-KVALLQNH 417 (609)
Q Consensus 347 --g~~Lasgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~~~-~~~~~~~h 417 (609)
+++||+|+.||+|+|||+.+++ .+..+.+|...|.+++|+ +.+|++++.||.|++||++.... ....+.+|
T Consensus 65 ~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h 144 (297)
T 2pm7_B 65 KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (297)
T ss_dssp GGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECC
T ss_pred CcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecc
Confidence 8999999999999999998874 567788999999999994 57999999999999999987532 24667899
Q ss_pred CCCeEEEEEccC-------------CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC--CcEE
Q psy4876 418 TQEVCGLKWSPD-------------GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS--PNVL 482 (609)
Q Consensus 418 ~~~V~~l~~spd-------------g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~~ll 482 (609)
...|.+++|+|+ +++|++|+.|+.|++||++.+... ......+.+|...|.+++|+|++ ..+|
T Consensus 145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~--~~~~~~l~~H~~~V~~v~~sp~~~~~~~l 222 (297)
T 2pm7_B 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYM 222 (297)
T ss_dssp SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce--EEEEEEecCCCCceEEEEECCCCCCceEE
Confidence 999999999997 579999999999999999876210 12556788999999999999986 4678
Q ss_pred EEEeccCCCeEEEEECCCCc--e-eEEE---cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q psy4876 483 ASGGGTADRHIYFWNVSSGA--C-LDSI---DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~--~-~~~~---~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~ 542 (609)
++++ .|+.|++||+.++. . ...+ .+...|.+++|+|++++|++++ .|+.|+||+..
T Consensus 223 as~s--~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~--~D~~v~lw~~~ 284 (297)
T 2pm7_B 223 ASVS--QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG--GDNKVTLWKEN 284 (297)
T ss_dssp EEEE--TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE--TTSCEEEEEEC
T ss_pred EEEE--CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEc--CCCcEEEEEEC
Confidence 8874 89999999998653 1 2222 2345899999999999999854 79999999975
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-31 Score=294.42 Aligned_cols=280 Identities=15% Similarity=0.252 Sum_probs=242.8
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCcccccccccccccc--ceeeeeeec-CCCC-eEEEEE
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNR--AIDHLMDLE-GNEN-VCSVAW 343 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~-h~~~-V~~v~~ 343 (609)
...|.+++|+|++ +++++.++.|+|||+.+ + ....+..+. |... |++++|
T Consensus 18 ~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~-------------------------~~~~~~~~~~~~~h~~~~v~~~~~ 72 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDD-------------------------GDSKVPPVVQFTGHGSSVVTTVKF 72 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCS-------------------------SCCSSCSEEEECTTTTSCEEEEEE
T ss_pred cCceeEEEECCCCCEEEEecCCeEEEEECCC-------------------------CCCccccceEEecCCCceEEEEEE
Confidence 3458889999996 77777799999999987 3 112344555 8899 999999
Q ss_pred cc--CCCEEEEEeCCCeEEEEeCCCC--------eeEEEecCCCCceEEEEe--cCCEEEEEecC----CeEEEEEcCCC
Q psy4876 344 IQ--EGYMLGVGTSLGTVQLWDVSAK--------KKCRTMDGHDVRVGALAW--NTYILSSGSRC----GNIVHHDVRSR 407 (609)
Q Consensus 344 sp--dg~~Lasgs~dg~I~iwd~~~~--------~~~~~l~~h~~~V~~l~~--~~~~L~sgs~d----g~I~iwd~~~~ 407 (609)
+| ++++||+|+.||.|+|||+.++ +.+..+..|...|.+++| ++.+|++++.+ +.|.+||. +
T Consensus 73 sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~ 150 (615)
T 1pgu_A 73 SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--G 150 (615)
T ss_dssp CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--C
T ss_pred CcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--C
Confidence 99 9999999999999999999754 777888899999999999 57899999987 78999983 2
Q ss_pred CeeEEEEccCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcc---cEEEEEEcCC-CCcEE
Q psy4876 408 DHKVALLQNHTQEVCGLKWSPDGR-YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA---AVKAIAWCPW-SPNVL 482 (609)
Q Consensus 408 ~~~~~~~~~h~~~V~~l~~spdg~-~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~---~V~~l~~sp~-~~~ll 482 (609)
..+..+.+|...|.+++|+|++. +|++++.|+.|++||+.++ +.+..+..|.. .|.+++|+|+ + .++
T Consensus 151 -~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l 222 (615)
T 1pgu_A 151 -NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF------KFSASDRTHHKQGSFVRDVEFSPDSG-EFV 222 (615)
T ss_dssp -CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB------EEEEEECSSSCTTCCEEEEEECSTTC-CEE
T ss_pred -CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc------ceeeeecccCCCCceEEEEEECCCCC-CEE
Confidence 46788899999999999999998 8999999999999999887 78888999999 9999999999 6 566
Q ss_pred EEEeccCCCeEEEEECCCCceeEEE-----cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC----
Q psy4876 483 ASGGGTADRHIYFWNVSSGACLDSI-----DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH---- 553 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~~~~~~-----~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h---- 553 (609)
++++ .|+.|++||+.+++.+..+ .+...|.+++|+ ++.+++++ ..|+.|++||+.+++.+..+..|
T Consensus 223 ~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~--~~d~~i~~wd~~~~~~~~~~~~~~~~~ 297 (615)
T 1pgu_A 223 ITVG--SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATV--GADATIRVWDVTTSKCVQKWTLDKQQL 297 (615)
T ss_dssp EEEE--TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEE--ETTSEEEEEETTTTEEEEEEECCTTCG
T ss_pred EEEe--CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEE--cCCCcEEEEECCCCcEEEEEcCCCCcc
Confidence 6653 7999999999999999998 455699999999 99999985 48999999999999999998877
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 554 SARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 554 ~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
...+.++.|. ++.+|++++.|+.|++||+..+...
T Consensus 298 ~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~ 332 (615)
T 1pgu_A 298 GNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVL 332 (615)
T ss_dssp GGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEE
T ss_pred cCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEE
Confidence 3678888886 8999999999999999999875543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=281.79 Aligned_cols=270 Identities=18% Similarity=0.225 Sum_probs=233.7
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc-
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ- 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp- 345 (609)
...|.+++|++++ +++++.||.|++||+.+ +. .+..+. |...|.+++|++
T Consensus 162 ~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~-------------------------~~--~~~~~~~h~~~v~~l~~~~~ 214 (464)
T 3v7d_B 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKK-------------------------GC--CTHVFEGHNSTVRCLDIVEY 214 (464)
T ss_dssp SSCEEEEEECSTTEEEEEETTSCEEEEETTT-------------------------TE--EEEEECCCSSCEEEEEEEES
T ss_pred CcCEEEEEEcCCCEEEEEeCCCCEEEEECCC-------------------------Cc--EEEEECCCCCccEEEEEecC
Confidence 4468999999987 66789999999999987 44 344555 899999999994
Q ss_pred -CCCEEEEEeCCCeEEEEeCCCCe-----------------------eEEEecCCCCceEEEEecCCEEEEEecCCeEEE
Q psy4876 346 -EGYMLGVGTSLGTVQLWDVSAKK-----------------------KCRTMDGHDVRVGALAWNTYILSSGSRCGNIVH 401 (609)
Q Consensus 346 -dg~~Lasgs~dg~I~iwd~~~~~-----------------------~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~i 401 (609)
++.+|++|+.||.|++||+.++. .+..+.+|...|.++..++.+|++|+.||.|++
T Consensus 215 ~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~v 294 (464)
T 3v7d_B 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 294 (464)
T ss_dssp SSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEE
T ss_pred CCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEE
Confidence 77999999999999999998764 256788999999999999999999999999999
Q ss_pred EEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcE
Q psy4876 402 HDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 402 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 481 (609)
||+++. ..+..+.+|...|.+++|+|++++|++|+.||.|++||++++ +++..+.+|...|.+++|++ ..
T Consensus 295 wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~~---~~ 364 (464)
T 3v7d_B 295 WDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG------ELMYTLQGHTALVGLLRLSD---KF 364 (464)
T ss_dssp EETTTT-EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECS---SE
T ss_pred EECCCC-cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------cEEEEEeCCCCcEEEEEEcC---CE
Confidence 999986 578889999999999999999999999999999999999988 78899999999999999984 46
Q ss_pred EEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE-EeCCCCCEEEE
Q psy4876 482 LASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE-LHGHSARVLNL 560 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~-l~~h~~~V~~l 560 (609)
+++++ .|+.|++||+.++...........+..++|++++.+++++ . |+.|+|||+.+++.+.. +..|...|.++
T Consensus 365 l~s~s--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v 439 (464)
T 3v7d_B 365 LVSAA--ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG--S-ENQFNIYNLRSGKLVHANILKDADQIWSV 439 (464)
T ss_dssp EEEEE--TTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEE--E-TTEEEEEETTTCCEEESCTTTTCSEEEEE
T ss_pred EEEEe--CCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEe--c-CCeEEEEECCCCcEEehhhccCCCcEEEE
Confidence 77764 8999999999999888888777888999999999998884 3 89999999999999876 56789999999
Q ss_pred EEeCCCCEEEEEECCCCEEEE
Q psy4876 561 AMSPDETTVLSAGADETLRLW 581 (609)
Q Consensus 561 ~~spdg~~L~s~s~Dg~I~iW 581 (609)
+|+ ++.++++++.||.+.+|
T Consensus 440 ~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 440 NFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEE-TTEEEEEEEETTEEEEE
T ss_pred Eec-CCEEEEEEEeCCeEEEE
Confidence 997 33445555666655544
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-31 Score=309.78 Aligned_cols=177 Identities=10% Similarity=0.059 Sum_probs=139.3
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCC--------CCCceEEecCCcccccccc------ccccccceeeeeeecC
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESD--------SNSKYIICQSPLVQELTSK------CIQDNRAIDHLMDLEG 334 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~--------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~h 334 (609)
.|++|+|+|++ +++++.||.|+||+.... ......+.|+| +..+++. .+|+......+..+.|
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~ 97 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFV 97 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEEC
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcC
Confidence 48889999986 555777899999987653 22334567777 4434332 2344333344555557
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeE-----------EEecCCCCceEEEEecC---CEEEEEecCCeEE
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKC-----------RTMDGHDVRVGALAWNT---YILSSGSRCGNIV 400 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~-----------~~l~~h~~~V~~l~~~~---~~L~sgs~dg~I~ 400 (609)
.+.|++++|+|++++|++|+.||.|++||+.+++.. ..+.+|...|.+++|++ ..|++|+.||.|
T Consensus 98 ~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v- 176 (902)
T 2oaj_A 98 PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL- 176 (902)
T ss_dssp SSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-
T ss_pred CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-
Confidence 789999999999999999999999999999988754 23467999999999964 589999999999
Q ss_pred EEEcCCCCeeEEEEccC------------------CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q psy4876 401 HHDVRSRDHKVALLQNH------------------TQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPG 450 (609)
Q Consensus 401 iwd~~~~~~~~~~~~~h------------------~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~ 450 (609)
+||+++. ..+..+..| ...|.+++|+|+|.+||+|+.||.|++||++++
T Consensus 177 lWd~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 177 TYSLVEN-EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp EEETTTT-EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred EEECCCC-ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 9999986 466666655 577999999999999999999999999999765
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-31 Score=284.19 Aligned_cols=258 Identities=21% Similarity=0.426 Sum_probs=218.8
Q ss_pred cceeeeeeecCCCCeEEEEEccC-CCEEEEEeCCCeEEEEeCCC----------CeeEEEecCCCCceEEEEec--CC-E
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQE-GYMLGVGTSLGTVQLWDVSA----------KKKCRTMDGHDVRVGALAWN--TY-I 389 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~spd-g~~Lasgs~dg~I~iwd~~~----------~~~~~~l~~h~~~V~~l~~~--~~-~ 389 (609)
+.+.....+.|.+.|++++|+|+ +.+||+|+.||.|+|||+.. ...+..+.+|...|.+++|+ +. +
T Consensus 117 ~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 196 (430)
T 2xyi_A 117 GKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGY 196 (430)
T ss_dssp -CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTE
T ss_pred CceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCe
Confidence 34444455559999999999997 68999999999999999986 57788899999999999995 44 9
Q ss_pred EEEEecCCeEEEEEcCCCCe------eEEEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee
Q psy4876 390 LSSGSRCGNIVHHDVRSRDH------KVALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL 462 (609)
Q Consensus 390 L~sgs~dg~I~iwd~~~~~~------~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~ 462 (609)
|++|+.||.|++||+..... ....+.+|...|.+++|+| ++.+|++++.||.|++||++.+.. ..++..+
T Consensus 197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~---~~~~~~~ 273 (430)
T 2xyi_A 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT---SKPSHTV 273 (430)
T ss_dssp EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---SSCSEEE
T ss_pred EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---CcceeEe
Confidence 99999999999999987421 1456778999999999999 788999999999999999997631 1466777
Q ss_pred cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC-CceeEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEE
Q psy4876 463 SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS-GACLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWK 540 (609)
Q Consensus 463 ~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t-~~~~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd 540 (609)
..|...|.+++|+|++..++++|+ .|+.|++||+++ +.++..+.. ...|.+++|+|++..++++ +..|+.|+|||
T Consensus 274 ~~~~~~v~~i~~~p~~~~~l~tg~--~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s-~~~d~~i~iwd 350 (430)
T 2xyi_A 274 DAHTAEVNCLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS-SGTDRRLHVWD 350 (430)
T ss_dssp ECCSSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE-EETTSCCEEEE
T ss_pred ecCCCCeEEEEeCCCCCCEEEEEe--CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE-EeCCCcEEEEe
Confidence 789999999999999988898875 899999999997 566777764 4689999999999764443 34799999999
Q ss_pred CCC--------------CceEEEEeCCCCCEEEEEEeCCCC-EEEEEECCCCEEEEEcCCCc
Q psy4876 541 YPS--------------LVKVAELHGHSARVLNLAMSPDET-TVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 541 ~~~--------------~~~~~~l~~h~~~V~~l~~spdg~-~L~s~s~Dg~I~iWdl~~~~ 587 (609)
+.. ...+..+.+|...|.+++|+|++. +|++++.||.|+||++....
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 351 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp GGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred CCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 976 366777889999999999999999 99999999999999997644
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-31 Score=271.62 Aligned_cols=281 Identities=12% Similarity=0.159 Sum_probs=224.8
Q ss_pred ceeEEEEEecCC---C--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEE
Q psy4876 269 DYYLNLIDWSHF---N--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVA 342 (609)
Q Consensus 269 ~~~v~~l~wsp~---~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~ 342 (609)
...|++|+|+|+ + +++++.||.|+|||+.+ ........+. |...|++++
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~-------------------------~~~~~~~~~~~h~~~v~~~~ 93 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQD-------------------------SGQTIPKAQQMHTGPVLDVC 93 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECT-------------------------TSCEEEEEEEECSSCEEEEE
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCC-------------------------CCceeEEEeccccCCEEEEE
Confidence 446999999998 3 66688899999999986 2333324444 899999999
Q ss_pred EccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--c--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCC
Q psy4876 343 WIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--N--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHT 418 (609)
Q Consensus 343 ~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 418 (609)
|+|++++|++|+.||.|++||+.+++.+. +..|...|.+++| + +.+|++++.||.|++||++++. .+..+..|.
T Consensus 94 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~ 171 (368)
T 3mmy_A 94 WSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-PMMVLQLPE 171 (368)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-CSEEEECSS
T ss_pred ECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-EEEEEecCC
Confidence 99999999999999999999999988776 5569999999999 4 5789999999999999999874 666676554
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCc---EEEEEeccCCCeEE
Q psy4876 419 QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPN---VLASGGGTADRHIY 494 (609)
Q Consensus 419 ~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~---llasggGs~Dg~I~ 494 (609)
.+.++.+.+ ..+++++.|+.+.+||++... ...... ..+...+.++++.++... .++++ +.|+.|+
T Consensus 172 -~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dg~i~ 241 (368)
T 3mmy_A 172 -RCYCADVIY--PMAVVATAERGLIVYQLENQP-----SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG--SIEGRVA 241 (368)
T ss_dssp -CEEEEEEET--TEEEEEEGGGCEEEEECSSSC-----EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE--ETTSEEE
T ss_pred -CceEEEecC--CeeEEEeCCCcEEEEEecccc-----chhhhccccccCCCceEEEcccCCCCCCeEEEe--cCCCcEE
Confidence 566666664 578899999999999998763 122222 223445566666554432 25555 3899999
Q ss_pred EEECCCC---ceeEEEcCCC-------------CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEE
Q psy4876 495 FWNVSSG---ACLDSIDTKS-------------QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVL 558 (609)
Q Consensus 495 iwd~~t~---~~~~~~~~~~-------------~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~ 558 (609)
+||+... ..+..+..+. .|.+++|+|++++|+++ +.||.|+|||+.+++.+..+.+|...|.
T Consensus 242 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 319 (368)
T 3mmy_A 242 IHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATV--GSDGRFSFWDKDARTKLKTSEQLDQPIS 319 (368)
T ss_dssp EEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEE--ETTSCEEEEETTTTEEEEECCCCSSCEE
T ss_pred EEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEE--ccCCeEEEEECCCCcEEEEecCCCCCce
Confidence 9999987 4566666554 59999999999999984 4899999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 559 NLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 559 ~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
+++|+|+|.+|++++.|+..+.|++...+.
T Consensus 320 ~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~ 349 (368)
T 3mmy_A 320 ACCFNHNGNIFAYASSYDWSKGHEFYNPQK 349 (368)
T ss_dssp EEEECTTSSCEEEEECCCSTTCGGGCCTTS
T ss_pred EEEECCCCCeEEEEecccccccccccCCCc
Confidence 999999999999999999877777665443
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-31 Score=277.66 Aligned_cols=253 Identities=16% Similarity=0.208 Sum_probs=217.9
Q ss_pred eeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe------eEEEecCCCCceEEEEe--c----C---CEEEEE
Q psy4876 330 MDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK------KCRTMDGHDVRVGALAW--N----T---YILSSG 393 (609)
Q Consensus 330 ~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~------~~~~l~~h~~~V~~l~~--~----~---~~L~sg 393 (609)
..+. |.+.|++++|+| ++|++|+.||.|+|||+.+++ .+..+.+|...|.+++| + + .+|+++
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 3444 999999999998 799999999999999999887 78889999999999999 4 7 899999
Q ss_pred ecCCeEEEEEcCCCCee-----EEEEccC-----CCCeEEEEEc----cCCCE-EEEEeCCCcEEEEeCCC------CCC
Q psy4876 394 SRCGNIVHHDVRSRDHK-----VALLQNH-----TQEVCGLKWS----PDGRY-LASGGNDNLLNIWSGVP------GQH 452 (609)
Q Consensus 394 s~dg~I~iwd~~~~~~~-----~~~~~~h-----~~~V~~l~~s----pdg~~-lasgs~Dg~I~iwd~~~------~~~ 452 (609)
+.||.|++||+.+.. . ...+..| ...|.+++|+ |++.+ |++++.||.|++||+.. +..
T Consensus 88 ~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 88 SFSGDLLFYRITRED-ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp ETTSCEEEEEEEECT-TTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred cCCCCEEEEEccCCc-ccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence 999999999998764 3 7778888 5899999999 99999 99999999999999987 421
Q ss_pred CCCccceEee-------cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC-------CCCeEEEEE
Q psy4876 453 TFSTQPIHSL-------SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT-------KSQVCALLW 518 (609)
Q Consensus 453 ~~~~~~~~~~-------~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~-------~~~v~sl~~ 518 (609)
.. ..+...+ ..|...|.+++|+|++ +++++ +.|+.|++||+++++.+..+.. ...+.+++|
T Consensus 167 ~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 167 LN-WSPTLELQGTVESPMTPSQFATSVDISERG--LIATG--FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp TC-CCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEE--CTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred ee-ccCcceeeeeeccccCCCCCceEEEECCCc--eEEEE--eCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence 10 1111155 4588999999999988 66666 4899999999999999999887 679999999
Q ss_pred cCCCCeEEEEEecCC---CeEEEEECCCCceEEEEeC-------------CCCCEEEEEEeCCCCEEEEEECCCCEEEEE
Q psy4876 519 NSDYKELVSAHGFAQ---NQLIIWKYPSLVKVAELHG-------------HSARVLNLAMSPDETTVLSAGADETLRLWK 582 (609)
Q Consensus 519 s~~g~~l~~~sG~~d---g~I~Iwd~~~~~~~~~l~~-------------h~~~V~~l~~spdg~~L~s~s~Dg~I~iWd 582 (609)
+|++.+|++++ .| +.|++||+.+++.+..+.+ |...|.+++|+|++.+|++++.||.|+|||
T Consensus 242 ~~~~~~l~~~~--~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 242 SPQGSLLAIAH--DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp CSSTTEEEEEE--EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred CCCCCEEEEEe--cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 99999999854 68 9999999999999999998 999999999999999999999999999999
Q ss_pred cCCCccchhh
Q psy4876 583 IFEKVKSKKK 592 (609)
Q Consensus 583 l~~~~~~~k~ 592 (609)
+..+......
T Consensus 320 ~~~~~~~~~~ 329 (397)
T 1sq9_A 320 VKTKERITTL 329 (397)
T ss_dssp TTTTEEEEEE
T ss_pred cCCCceeEEE
Confidence 9887655443
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-32 Score=288.98 Aligned_cols=246 Identities=13% Similarity=0.230 Sum_probs=207.3
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe-----------eEEEecCCC------------CceEEEEec--C
Q psy4876 333 EGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK-----------KCRTMDGHD------------VRVGALAWN--T 387 (609)
Q Consensus 333 ~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~-----------~~~~l~~h~------------~~V~~l~~~--~ 387 (609)
.+.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|.+++|+ +
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367899999999999999999999999999998876 578899998 889999994 3
Q ss_pred --CEEEEEecCCeEEEEEcCCCCee--------------------------------------E-EEEccCCCCeEEEEE
Q psy4876 388 --YILSSGSRCGNIVHHDVRSRDHK--------------------------------------V-ALLQNHTQEVCGLKW 426 (609)
Q Consensus 388 --~~L~sgs~dg~I~iwd~~~~~~~--------------------------------------~-~~~~~h~~~V~~l~~ 426 (609)
..|++++.||.|++||+...... . ....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 68999999999999999763211 1 123689999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceE-------eecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC
Q psy4876 427 SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIH-------SLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS 499 (609)
Q Consensus 427 spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~-------~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~ 499 (609)
+|++++|++| .|+.|++||++... ..+. .+.+|...|.+++|+|++..++++|+ .|+.|++||++
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~ 257 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITD-----RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS--SKGTIRLCDMR 257 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEE-----EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE--TTSCEEEEETT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCC-----ceeeeeecccccccccCcceEEEEECCCCCcEEEEEe--CCCeEEEEECc
Confidence 9999999998 79999999998431 2333 36689999999999999867888874 89999999999
Q ss_pred CCce----eEEEcCCC-------------CeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceEEEEeCCCCC-----
Q psy4876 500 SGAC----LDSIDTKS-------------QVCALLWNSDYKELVSAHGFAQNQLIIWKYPS-LVKVAELHGHSAR----- 556 (609)
Q Consensus 500 t~~~----~~~~~~~~-------------~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~-~~~~~~l~~h~~~----- 556 (609)
+++. +..+..+. .|.+++|+|++++|++++ . +.|+|||+.. ++.+..+.+|...
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~ 334 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD--Y-LSVKVWDLNMENRPVETYQVHEYLRSKLC 334 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE--S-SEEEEEETTCCSSCSCCEESCGGGTTTHH
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee--C-CeEEEEeCCCCccccceeecccccccccc
Confidence 9887 67777654 799999999999999843 5 9999999997 8888888888642
Q ss_pred ----------EEEEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 557 ----------VLNLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 557 ----------V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
+..++|+|++++|++|+.||.|+|||+.++...
T Consensus 335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 334999999999999999999999999987653
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=274.62 Aligned_cols=250 Identities=17% Similarity=0.259 Sum_probs=212.4
Q ss_pred eeeeec-CCCCeEEEEEccCC-CEEEEEeCCCeEEEEeCCCCeeEEEec--CCCCceEEEEec---CCEEEEEecCCeEE
Q psy4876 328 HLMDLE-GNENVCSVAWIQEG-YMLGVGTSLGTVQLWDVSAKKKCRTMD--GHDVRVGALAWN---TYILSSGSRCGNIV 400 (609)
Q Consensus 328 ~l~~~~-h~~~V~~v~~spdg-~~Lasgs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~~---~~~L~sgs~dg~I~ 400 (609)
....+. |...|++++|+|++ ++||+|+.||.|+|||+.+++....+. +|...|.+++|+ +.+|++++.||.|+
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 344555 89999999999999 999999999999999999888777775 699999999995 47999999999999
Q ss_pred EEEcCCCCeeEEEEcc---CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCC
Q psy4876 401 HHDVRSRDHKVALLQN---HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW 477 (609)
Q Consensus 401 iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 477 (609)
+||+... .+..+.. |...|.+++|+|++++|++|+.|+.|++||++ + .++..+..|...|.+++|+|+
T Consensus 145 iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~------~~~~~~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 145 LRDFSGS--VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G------HEIFKEKLHKAKVTHAEFNPR 215 (383)
T ss_dssp EEETTSC--EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S------CEEEEEECSSSCEEEEEECSS
T ss_pred EEECCCC--ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C------CEEEEeccCCCcEEEEEECCC
Confidence 9999963 4555544 44889999999999999999999999999994 4 578888999999999999999
Q ss_pred CCcEEEEEeccCCCeEEEEECCC----CceeEEEcCCCCeEEEEEcC-CCCeEEEEEecCCCeEEEEECCCCceEEEEeC
Q psy4876 478 SPNVLASGGGTADRHIYFWNVSS----GACLDSIDTKSQVCALLWNS-DYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 478 ~~~llasggGs~Dg~I~iwd~~t----~~~~~~~~~~~~v~sl~~s~-~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~ 552 (609)
+..++++|+ .|+.|++||+++ +.++..+.+...|.+++|+| ++.+|+++ ..|+.|+|||+.++..+..+.+
T Consensus 216 ~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~ 291 (383)
T 3ei3_B 216 CDWLMATSS--VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTT--DQRNEIRVYSSYDWSKPDQIII 291 (383)
T ss_dssp CTTEEEEEE--TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEE--ESSSEEEEEETTBTTSCSEEEE
T ss_pred CCCEEEEEe--CCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEE--cCCCcEEEEECCCCcccccccc
Confidence 987888874 899999999998 77888887778999999999 99999985 4899999999999887777765
Q ss_pred CC-----------------CCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhh
Q psy4876 553 HS-----------------ARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKK 592 (609)
Q Consensus 553 h~-----------------~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~ 592 (609)
|. ..+..++|+|+|++ +++.|+.|+|||+.++......
T Consensus 292 ~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l 346 (383)
T 3ei3_B 292 HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQL 346 (383)
T ss_dssp CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEE
T ss_pred ccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeee
Confidence 53 33445666666666 7778999999999887765443
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-30 Score=290.27 Aligned_cols=270 Identities=18% Similarity=0.295 Sum_probs=232.7
Q ss_pred ee-EEEEEecC--CC--eEEEEcCCeEEEEeCCCCCCCceEEecCCcccccccccccccc------ceeeeeeec-CCCC
Q psy4876 270 YY-LNLIDWSH--FN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNR------AIDHLMDLE-GNEN 337 (609)
Q Consensus 270 ~~-v~~l~wsp--~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~-h~~~ 337 (609)
.. |.+++|+| ++ +++++.|+.|+|||+.+ + ....+..+. |...
T Consensus 64 ~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~ 118 (615)
T 1pgu_A 64 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF-------------------------DKESNSVEVNVKSEFQVLAGP 118 (615)
T ss_dssp TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE-------------------------EGGGTEEEEEEEEEEECCSSC
T ss_pred CceEEEEEECcCCCCCEEEEecCCCEEEEEeCCC-------------------------Ccccccccccccchhhccccc
Confidence 35 89999999 86 66688899999999975 3 344555666 8899
Q ss_pred eEEEEEccCCCEEEEEeCC----CeEEEEeCCCCeeEEEecCCCCceEEEEec--CC-EEEEEecCCeEEEEEcCCCCee
Q psy4876 338 VCSVAWIQEGYMLGVGTSL----GTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TY-ILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 338 V~~v~~spdg~~Lasgs~d----g~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~-~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
|.+++|+|++++|++++.+ +.|.+|| .++.+..+.+|...|.+++|+ +. .|++++.||.|++||+.+. ..
T Consensus 119 v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-~~ 195 (615)
T 1pgu_A 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-KF 195 (615)
T ss_dssp EEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-EE
T ss_pred EEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-ce
Confidence 9999999999999999988 6888888 567889999999999999995 33 8999999999999999886 57
Q ss_pred EEEEccCCC---CeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-c---CCcccEEEEEEcCCCCcEE
Q psy4876 411 VALLQNHTQ---EVCGLKWSPD-GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-S---RHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 411 ~~~~~~h~~---~V~~l~~spd-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~---~h~~~V~~l~~sp~~~~ll 482 (609)
+..+.+|.. .|.+++|+|+ +++|++++.|+.|++||+.++ +.+..+ . .|...|.+++|+ ++ .++
T Consensus 196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l 267 (615)
T 1pgu_A 196 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG------EFLKYIEDDQEPVQGGIFALSWL-DS-QKF 267 (615)
T ss_dssp EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC------CEEEECCBTTBCCCSCEEEEEES-SS-SEE
T ss_pred eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC------CEeEEecccccccCCceEEEEEc-CC-CEE
Confidence 788899999 9999999999 999999999999999999988 677777 5 899999999999 66 456
Q ss_pred EEEeccCCCeEEEEECCCCceeEEEcCC-----CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCE
Q psy4876 483 ASGGGTADRHIYFWNVSSGACLDSIDTK-----SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARV 557 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~~~~~~~~~-----~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V 557 (609)
++++ .|+.|++||+.+++++..+..+ ..+.++.|. ++.++++ +..++.|++||+.+++.+..+.+|...|
T Consensus 268 ~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~--~~~~g~i~~~d~~~~~~~~~~~~~~~~v 342 (615)
T 1pgu_A 268 ATVG--ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIIS--LSLDGTLNFYELGHDEVLKTISGHNKGI 342 (615)
T ss_dssp EEEE--TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEE--EETTSCEEEEETTEEEEEEEECCCSSCE
T ss_pred EEEc--CCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEE--EECCCCEEEEECCCCcEEEEEeCCCCCE
Confidence 6653 7999999999999999988766 578888886 8888888 4489999999999999999999999999
Q ss_pred EEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 558 LNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 558 ~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
.+++| |+ |++++.||.|++|++.
T Consensus 343 ~~~~~-~~---l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 343 TALTV-NP---LISGSYDGRIMEWSSS 365 (615)
T ss_dssp EEEET-TT---TEEEETTSCEEETTTT
T ss_pred EEEEe-cC---cEEECCCCeEEEEEch
Confidence 99888 77 6777777777777764
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-30 Score=271.25 Aligned_cols=244 Identities=14% Similarity=0.226 Sum_probs=212.2
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe--eEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK--KCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDH 409 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~ 409 (609)
|.+.|++++|+|++++||+|+.||.|+|||+.+++ .+..+.+|...|.+++| ++.+|++++.||.|++||+.+...
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 86 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence 78899999999999999999999999999999987 88999999999999999 478999999999999999987642
Q ss_pred -eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEecc
Q psy4876 410 -KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGT 488 (609)
Q Consensus 410 -~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs 488 (609)
....+..|...|.+++|+|++++|++|+.|+.|++||++.+.... ........|...|.+++|+|++. ++++++
T Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-- 161 (372)
T 1k8k_C 87 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW--VCKHIKKPIRSTVLSLDWHPNSV-LLAAGS-- 161 (372)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE--EEEEECTTCCSCEEEEEECTTSS-EEEEEE--
T ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce--eeeeeecccCCCeeEEEEcCCCC-EEEEEc--
Confidence 233346799999999999999999999999999999998763100 01233366889999999999885 566653
Q ss_pred CCCeEEEEEC------------------CCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE
Q psy4876 489 ADRHIYFWNV------------------SSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE 549 (609)
Q Consensus 489 ~Dg~I~iwd~------------------~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~ 549 (609)
.|+.|++||+ ..++++..+..+ ..+.+++|+|++.+++++ ..|+.|++||+.+++.+..
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~ 239 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV--SHDSTVCLADADKKMAVAT 239 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE--ETTTEEEEEEGGGTTEEEE
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEE--eCCCEEEEEECCCCceeEE
Confidence 8999999995 467888888654 589999999999999985 4899999999999999999
Q ss_pred EeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 550 LHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 550 l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
+..|...|.+++|+|++.+|+++ .|+.|++|++..
T Consensus 240 ~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 240 LASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred EccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 99999999999999999988877 999999999988
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.9e-30 Score=298.57 Aligned_cols=250 Identities=20% Similarity=0.308 Sum_probs=225.7
Q ss_pred eec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCC
Q psy4876 331 DLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSR 407 (609)
Q Consensus 331 ~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~ 407 (609)
.+. |.+.|++++|+|+|.+||+|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++|+.||.|++||+.++
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 87 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 444 8999999999999999999999999999999999999999999999999999 5789999999999999999987
Q ss_pred CeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEec
Q psy4876 408 DHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 408 ~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggG 487 (609)
..+..+.+|...|.+++|+|++.+|++|+.||.|++||+.++. .....+.+|...|.+++|+|.+..++++++
T Consensus 88 -~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-----~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~- 160 (814)
T 3mkq_A 88 -EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-----ALEQTFEGHEHFVMCVAFNPKDPSTFASGC- 160 (814)
T ss_dssp -CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-----EEEEEEECCSSCEEEEEEETTEEEEEEEEE-
T ss_pred -cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-----eEEEEEcCCCCcEEEEEEEcCCCCEEEEEe-
Confidence 4778888999999999999999999999999999999998752 456778889999999999994445777764
Q ss_pred cCCCeEEEEECCCCceeEEEcCC--CCeEEEEEcC--CCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEe
Q psy4876 488 TADRHIYFWNVSSGACLDSIDTK--SQVCALLWNS--DYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMS 563 (609)
Q Consensus 488 s~Dg~I~iwd~~t~~~~~~~~~~--~~v~sl~~s~--~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~s 563 (609)
.|+.|++||+.++.....+..+ ..+..++|+| ++.++++ |+.++.|++||+.++..+..+.+|...|.+++|+
T Consensus 161 -~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~--~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~ 237 (814)
T 3mkq_A 161 -LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT--ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237 (814)
T ss_dssp -TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEE--ECTTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred -CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEE--EeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 8999999999988877777644 6899999999 8999888 5589999999999999999999999999999999
Q ss_pred CCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 564 PDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 564 pdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
|++.+|++++.||.|++||+.++....
T Consensus 238 ~~~~~l~~~~~dg~v~vwd~~~~~~~~ 264 (814)
T 3mkq_A 238 PTLPIIISGSEDGTLKIWNSSTYKVEK 264 (814)
T ss_dssp SSSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 999999999999999999998765443
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-29 Score=260.95 Aligned_cols=254 Identities=19% Similarity=0.273 Sum_probs=217.9
Q ss_pred cceeeeeeec-CCCCeEEEEEccC-CCEEEEEeCCCeEEEEeCCCC-----eeEEEecCCCCceEEEEe--cCCEEEEEe
Q psy4876 324 RAIDHLMDLE-GNENVCSVAWIQE-GYMLGVGTSLGTVQLWDVSAK-----KKCRTMDGHDVRVGALAW--NTYILSSGS 394 (609)
Q Consensus 324 ~~~~~l~~~~-h~~~V~~v~~spd-g~~Lasgs~dg~I~iwd~~~~-----~~~~~l~~h~~~V~~l~~--~~~~L~sgs 394 (609)
.+.....++. |.+.|++|+|+|+ +++||+|+.||+|+|||+.+. .....+.+|...|.+++| ++.+|++++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 4555556777 9999999999998 589999999999999998764 356788999999999999 579999999
Q ss_pred cCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEE
Q psy4876 395 RCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAW 474 (609)
Q Consensus 395 ~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 474 (609)
.||.|++|+.... ........+...+..+.+++++.+|++|+.|+.+++||+.... .......+|...+..++|
T Consensus 106 ~d~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~-----~~~~~~~~~~~~v~~~~~ 179 (340)
T 4aow_A 106 WDGTLRLWDLTTG-TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC-----KYTVQDESHSEWVSCVRF 179 (340)
T ss_dssp TTSEEEEEETTTT-EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-----EEEECSSSCSSCEEEEEE
T ss_pred ccccceEEeeccc-ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc-----eEEEEeccccCcccceEE
Confidence 9999999999986 4666777788899999999999999999999999999987652 344556789999999999
Q ss_pred cCCCCc-EEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC
Q psy4876 475 CPWSPN-VLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 475 sp~~~~-llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~ 552 (609)
++++.. +++++ +.|+.|++||+.+++++..+..+ ..|.+++|+|++++|+++ +.|+.|+|||+.+.+.+..+..
T Consensus 180 ~~~~~~~~~~s~--~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~--s~Dg~i~iwd~~~~~~~~~~~~ 255 (340)
T 4aow_A 180 SPNSSNPIIVSC--GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG--GKDGQAMLWDLNEGKHLYTLDG 255 (340)
T ss_dssp CSCSSSCEEEEE--ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE--ETTCEEEEEETTTTEEEEEEEC
T ss_pred ccCCCCcEEEEE--cCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEE--eCCCeEEEEEeccCceeeeecC
Confidence 998755 45555 38999999999999999888765 589999999999999984 4899999999999999988875
Q ss_pred CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 553 HSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 553 h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
+ ..|.+++|+|++.+ ++++.|+.|+|||+.+....
T Consensus 256 ~-~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~ 290 (340)
T 4aow_A 256 G-DIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIV 290 (340)
T ss_dssp S-SCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEE
T ss_pred C-ceEEeeecCCCCce-eeccCCCEEEEEECCCCeEE
Confidence 5 68999999998865 55667999999999876543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.9e-30 Score=277.18 Aligned_cols=304 Identities=14% Similarity=0.128 Sum_probs=229.2
Q ss_pred eEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccc--------------ccccccc-------------
Q psy4876 271 YLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQEL--------------TSKCIQD------------- 322 (609)
Q Consensus 271 ~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~------------- 322 (609)
.+++++|++++ +++++.++.|++||+.++.....+..+....... ......+
T Consensus 6 p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred cEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 36789999997 8888889999999998754211222222111000 0000000
Q ss_pred ---ccceeeeeeec-CCCCeEEEEEccCCCEE-EEEeCCCeEEEEeCC--CCeeEEEec--CCCCceEEEEe--cCCEEE
Q psy4876 323 ---NRAIDHLMDLE-GNENVCSVAWIQEGYML-GVGTSLGTVQLWDVS--AKKKCRTMD--GHDVRVGALAW--NTYILS 391 (609)
Q Consensus 323 ---~~~~~~l~~~~-h~~~V~~v~~spdg~~L-asgs~dg~I~iwd~~--~~~~~~~l~--~h~~~V~~l~~--~~~~L~ 391 (609)
........... |.+.|.+++|+|+|++| ++|+.||.|+|||+. +++.+..+. .|...|.+++| ++.+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 165 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVI 165 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEE
Confidence 00000011112 55689999999999996 889999999999999 888888886 57789999999 578999
Q ss_pred EEecCCeEEEEEcCCCCe---eEEEEccCCCCeEEEEEccC---CCEEEEEeCCCcEEEEeCCCCCCCCCccceEe-ecC
Q psy4876 392 SGSRCGNIVHHDVRSRDH---KVALLQNHTQEVCGLKWSPD---GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHS-LSR 464 (609)
Q Consensus 392 sgs~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spd---g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~-~~~ 464 (609)
+|+.+|.|++|++..... ....+.+|...|.+++|+|+ +++|++|+.|+.|++||+.++ ..+.. +.+
T Consensus 166 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~------~~~~~~~~~ 239 (450)
T 2vdu_B 166 IADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC------FIVDKWLFG 239 (450)
T ss_dssp EEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT------TCEEEECCC
T ss_pred EEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC------ceeeeeecC
Confidence 999999999999987642 22366789999999999999 999999999999999999987 56666 568
Q ss_pred CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC--------------------------CCCeEEEEE
Q psy4876 465 HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT--------------------------KSQVCALLW 518 (609)
Q Consensus 465 h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~--------------------------~~~v~sl~~ 518 (609)
|...|.+++|+ ++ .+|++|+ .|+.|++||+.+++++..+.. ...+..++|
T Consensus 240 h~~~v~~~~~s-d~-~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 240 HKHFVSSICCG-KD-YLLLSAG--GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CSSCEEEEEEC-ST-TEEEEEE--SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred CCCceEEEEEC-CC-CEEEEEe--CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 99999999999 76 5666664 899999999999998888752 236899999
Q ss_pred cCCCCeEEEEEecCCCeEEEEEC--CCC---ceEEEEeCCCCCEEEEEEeCCCCEEEEEEC------CCCEEEEEcCCC
Q psy4876 519 NSDYKELVSAHGFAQNQLIIWKY--PSL---VKVAELHGHSARVLNLAMSPDETTVLSAGA------DETLRLWKIFEK 586 (609)
Q Consensus 519 s~~g~~l~~~sG~~dg~I~Iwd~--~~~---~~~~~l~~h~~~V~~l~~spdg~~L~s~s~------Dg~I~iWdl~~~ 586 (609)
+|++++++++++ .++.|+||++ ..+ ..+..+.+| +.|.+++|+|++.++++++. +..|.||.+...
T Consensus 316 ~~~~~~l~~~~~-~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 316 SKNLPFVAFFVE-ATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp CSSSSEEEEEET-TCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred eCCCCEEEEEEC-CCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 999999998642 6999999999 555 677778888 88999999996544443333 556899987654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.5e-32 Score=284.76 Aligned_cols=243 Identities=16% Similarity=0.189 Sum_probs=201.2
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC--eeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCC-
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAK--KKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRD- 408 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~--~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~- 408 (609)
+.+.|++++|+|+|++||+|+.||.|+|||+.++ +.+..+.+|...|.+++| ++.+|++++.||.|++||+.++.
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 5678999999999999999999999999999988 788889999999999999 46899999999999999998863
Q ss_pred -eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-CcccEEEEEEcCCCCcEEEEEe
Q psy4876 409 -HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-HQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 409 -~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~llasgg 486 (609)
.....+..|...|.+++|+|++++|++|+.|+.|++||++.+.. ......+.. |...|.+++|+|++. ++++++
T Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~ 165 (377)
T 3dwl_C 90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND---WWVSKHLKRPLRSTILSLDWHPNNV-LLAAGC 165 (377)
T ss_dssp CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC--------CCCCEEECSSCCSCEEEEEECTTSS-EEEEEE
T ss_pred eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc---ceeeeEeecccCCCeEEEEEcCCCC-EEEEEe
Confidence 24667788999999999999999999999999999999998731 124667777 999999999999884 666664
Q ss_pred ccCCCeEEEEECC------------------CCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce--
Q psy4876 487 GTADRHIYFWNVS------------------SGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK-- 546 (609)
Q Consensus 487 Gs~Dg~I~iwd~~------------------t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~-- 546 (609)
.|+.|++||+. .++++..+.+...|.+++|+|++++|+++ +.|+.|+|||+.+++.
T Consensus 166 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~~d~~i~iwd~~~~~~~~ 241 (377)
T 3dwl_C 166 --ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYA--GHDSSVTIAYPSAPEQPP 241 (377)
T ss_dssp --SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEE--ETTTEEC-CEECSTTSCE
T ss_pred --CCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEE--eCCCcEEEEECCCCCCcc
Confidence 89999999985 34455566455689999999999999985 4899999999999887
Q ss_pred --EEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 547 --VAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 547 --~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
+..+.+|...|.+++|+|+|++|++++.|+.+ +|+...
T Consensus 242 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 242 RALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp EECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 77889999999999999999999988766555 776653
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-29 Score=260.94 Aligned_cols=259 Identities=18% Similarity=0.263 Sum_probs=223.5
Q ss_pred cceeeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEE
Q psy4876 324 RAIDHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIV 400 (609)
Q Consensus 324 ~~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~ 400 (609)
|.......+. |.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++++.||.|+
T Consensus 20 G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 20 GSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp CCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred ccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 5555666666 9999999999999999999999999999999999999999999999999999 478999999999999
Q ss_pred EEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCCCCCC-----ccceEeecCCcc--c
Q psy4876 401 HHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGND-----NLLNIWSGVPGQHTFS-----TQPIHSLSRHQA--A 468 (609)
Q Consensus 401 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~D-----g~I~iwd~~~~~~~~~-----~~~~~~~~~h~~--~ 468 (609)
+||+.++. .+..+. |...|.+++|+|++++|++++.+ +.|++||+........ ...+..+..|.. .
T Consensus 100 iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 100 LWDVSNGQ-CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp EEETTTCC-EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred EEECCCCc-EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 99999874 555565 88999999999999999999999 9999999987642111 124455556666 8
Q ss_pred EEEEEEcCCCCcEEEEEeccCCCeEEEEECCC-CceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce
Q psy4876 469 VKAIAWCPWSPNVLASGGGTADRHIYFWNVSS-GACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK 546 (609)
Q Consensus 469 V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t-~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~ 546 (609)
+.+++|+|++. ++++++ .|+.|++||+.+ +..+..+..+ ..|.+++|+|++.+|+++ ..|+.|++||+.+++.
T Consensus 178 ~~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 178 ATVAGWSTKGK-YIIAGH--KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS--SRDTNSFLVDVSTLQV 252 (369)
T ss_dssp EEEEEECGGGC-EEEEEE--TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEE--ETTSEEEEEETTTCCE
T ss_pred eeEEEEcCCCC-EEEEEc--CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEe--cCCceEEEEECCCCce
Confidence 99999999886 555553 799999999998 7778777754 589999999999999985 4899999999999999
Q ss_pred EEEEeCCCCCEEEEEEeCCCCEEEEEECCC--------------CEEEEEcCCCccch
Q psy4876 547 VAELHGHSARVLNLAMSPDETTVLSAGADE--------------TLRLWKIFEKVKSK 590 (609)
Q Consensus 547 ~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg--------------~I~iWdl~~~~~~~ 590 (609)
+..+. +...+..++|+|++.++++++.++ .|++||+..+....
T Consensus 253 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 309 (369)
T 3zwl_B 253 LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG 309 (369)
T ss_dssp EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE
T ss_pred eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh
Confidence 98887 778899999999999999999998 89999998876544
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.98 E-value=6.2e-31 Score=270.86 Aligned_cols=242 Identities=21% Similarity=0.394 Sum_probs=198.8
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|++++|+|++ +++++.|++|+|||+.+ +....+..+. |.+.|.+++|++
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~-------------------------~~~~~~~~l~gH~~~V~~v~~~~ 67 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRN-------------------------GGQILIADLRGHEGPVWQVAWAH 67 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETTTEEEEEEEET-------------------------TEEEEEEEEECCSSCEEEEEECC
T ss_pred cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecC-------------------------CCcEEEEEEcCCCccEEEEEeCC
Confidence 3468999999986 67788999999999987 5444556666 999999999986
Q ss_pred --CCCEEEEEeCCCeEEEEeCCCC--eeEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCCCe--eEEEEc
Q psy4876 346 --EGYMLGVGTSLGTVQLWDVSAK--KKCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSRDH--KVALLQ 415 (609)
Q Consensus 346 --dg~~Lasgs~dg~I~iwd~~~~--~~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~~~--~~~~~~ 415 (609)
++++|++|+.|+.|+|||+.++ .....+.+|...|.+++|+ +.+|++|+.||.|++||++.... ....+.
T Consensus 68 ~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~ 147 (316)
T 3bg1_A 68 PMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN 147 (316)
T ss_dssp GGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTT
T ss_pred CCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeec
Confidence 4899999999999999999887 4667788999999999994 56899999999999999987532 234567
Q ss_pred cCCCCeEEEEEccC-----------------CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC
Q psy4876 416 NHTQEVCGLKWSPD-----------------GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS 478 (609)
Q Consensus 416 ~h~~~V~~l~~spd-----------------g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 478 (609)
+|...|.+++|+|+ +.+|++|+.|+.|++||++... ...++..+.+|...|.+++|+|++
T Consensus 148 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---~~~~~~~l~~h~~~V~~v~~sp~~ 224 (316)
T 3bg1_A 148 AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG---QWKEEQKLEAHSDWVRDVAWAPSI 224 (316)
T ss_dssp SSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS---CEEEEECCBCCSSCEEEEECCCCS
T ss_pred cccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC---ccceeeecccCCCceEEEEecCCC
Confidence 89999999999997 4789999999999999997541 113567788999999999999986
Q ss_pred ---CcEEEEEeccCCCeEEEEECCCC---c-eeEEE-cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q psy4876 479 ---PNVLASGGGTADRHIYFWNVSSG---A-CLDSI-DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 479 ---~~llasggGs~Dg~I~iwd~~t~---~-~~~~~-~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~ 542 (609)
..+|++++ .|++|++||+.+. . ....+ .+...|.+++|+|++++|++++ .|+.|+||+..
T Consensus 225 ~~~~~~las~s--~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~--~D~~v~lw~~~ 292 (316)
T 3bg1_A 225 GLPTSTIASCS--QDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSG--GDNKVTLWKES 292 (316)
T ss_dssp SCSCCEEEEEE--TTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEE--SSSCEEEEEEC
T ss_pred CCCCceEEEEc--CCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEc--CCCeEEEEEEC
Confidence 35788874 8999999999863 1 11222 2456899999999999999854 89999999965
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-31 Score=293.58 Aligned_cols=230 Identities=13% Similarity=0.145 Sum_probs=187.9
Q ss_pred CCEEEEEeCCCeEEEEeCCCCee----EEEecCCCCceEEEEecC--------CEEEEEecCCeEEEEEcCCCCe-----
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKK----CRTMDGHDVRVGALAWNT--------YILSSGSRCGNIVHHDVRSRDH----- 409 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~----~~~l~~h~~~V~~l~~~~--------~~L~sgs~dg~I~iwd~~~~~~----- 409 (609)
++.|++++.|++|+|||+.+++. ...+.+|.+.|.+++|++ .+|++++.||+|++||+.....
T Consensus 173 ~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~ 252 (524)
T 2j04_B 173 LEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF 252 (524)
T ss_dssp ---------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred hhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence 33444466789999999987654 244667889999999963 5999999999999999976531
Q ss_pred -----eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEE--EEcCCCCcEE
Q psy4876 410 -----KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI--AWCPWSPNVL 482 (609)
Q Consensus 410 -----~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l--~~sp~~~~ll 482 (609)
....+.+|...|.+++|++++ .|++|+.||+|++||++++. .+...+.+|...|.+| +|+|++..+|
T Consensus 253 ~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~-----~~~~~~~~H~~~V~sv~~~~s~~g~~~l 326 (524)
T 2j04_B 253 KMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE-----VPSFYDQVHDSYILSVSTAYSDFEDTVV 326 (524)
T ss_dssp ECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS-----SCSEEEECSSSCEEEEEEECCTTSCCEE
T ss_pred eeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC-----CceEEeecccccEEEEEEEcCCCCCeEE
Confidence 134678899999999999864 89999999999999998762 3556688999999999 5677665788
Q ss_pred EEEeccCCCeEEEEECCCCceeEEEcCC---CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEE
Q psy4876 483 ASGGGTADRHIYFWNVSSGACLDSIDTK---SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLN 559 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~~~~~~~~~---~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~ 559 (609)
++|+ .|++|+|||+++++++..+..+ ..|.+++|+|+++.+++ +..|++|+|||+.++.++..+.+|.+.|++
T Consensus 327 aS~S--~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s--~~~d~tv~lwd~~~~~~~~~l~gH~~~V~s 402 (524)
T 2j04_B 327 STVA--VDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIY--SDGASSLRAVPSRAAFAVHPLVSRETTITA 402 (524)
T ss_dssp EEEE--TTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEE--ECSSSEEEEEETTCTTCCEEEEECSSCEEE
T ss_pred EEec--cCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEE--eCCCCcEEEEECcccccceeeecCCCceEE
Confidence 8874 8999999999988877666543 24789999999999887 447999999999999988889999999999
Q ss_pred EEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 560 LAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 560 l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
|+|+|+|++|++|+.|++|++||+...
T Consensus 403 va~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 403 IGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp EECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred EEeCCCCCeEEEEECCCEEEEEechHh
Confidence 999999999999999999999998664
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6e-30 Score=310.02 Aligned_cols=281 Identities=17% Similarity=0.261 Sum_probs=240.0
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC-
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE- 346 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd- 346 (609)
.|.+++|+|++ +++++.|+.|+|||+.+ +.. +..+. |...|.+++|+|+
T Consensus 659 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-------------------------~~~--~~~~~~~~~~v~~~~~~~~~ 711 (1249)
T 3sfz_A 659 EVLCCAFSSDDSYIATCSADKKVKIWDSAT-------------------------GKL--VHTYDEHSEQVNCCHFTNKS 711 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTT-------------------------CCE--EEEEECCSSCEEEEEECSSS
T ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEECCC-------------------------Cce--EEEEcCCCCcEEEEEEecCC
Confidence 48899999996 66788899999999988 543 34444 8999999999994
Q ss_pred -CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeE------------
Q psy4876 347 -GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKV------------ 411 (609)
Q Consensus 347 -g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~------------ 411 (609)
+.++++|+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++++.||.|++||+.++....
T Consensus 712 ~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 791 (1249)
T 3sfz_A 712 NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSE 791 (1249)
T ss_dssp SCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC----
T ss_pred CceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccC
Confidence 578999999999999999999999999999999999999 57899999999999999987652110
Q ss_pred ------------------------------------------EEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy4876 412 ------------------------------------------ALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVP 449 (609)
Q Consensus 412 ------------------------------------------~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~ 449 (609)
....+|...|.+++|+|++.++++++.||.|++||+.+
T Consensus 792 ~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~ 871 (1249)
T 3sfz_A 792 DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS 871 (1249)
T ss_dssp ----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTT
T ss_pred CccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Confidence 11126788999999999999999999999999999998
Q ss_pred CCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce--------------------------
Q psy4876 450 GQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC-------------------------- 503 (609)
Q Consensus 450 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~-------------------------- 503 (609)
+ ..+..+.+|...|.+++|+|++. .+++++ .|+.|++||+.++..
T Consensus 872 ~------~~~~~~~~h~~~v~~v~~spdg~-~l~s~s--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1249)
T 3sfz_A 872 R------LKVADCRGHLSWVHGVMFSPDGS-SFLTAS--DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDN 942 (1249)
T ss_dssp T------EEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEES
T ss_pred C------ceeeecCCCccceEEEEECCCCC-EEEEEe--CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecC
Confidence 8 78888999999999999999986 455553 799999999753110
Q ss_pred ---e---------EEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEE
Q psy4876 504 ---L---------DSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571 (609)
Q Consensus 504 ---~---------~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s 571 (609)
+ ........+.+++|+|+++++++ |..+|.|++|++.++..+..+.+|...|.+++|+|+|++|++
T Consensus 943 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~--g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1020 (1249)
T 3sfz_A 943 IRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF--GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1020 (1249)
T ss_dssp SSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEE--EETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEE
T ss_pred CcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEE--EcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEE
Confidence 0 01112357899999999999998 558999999999999999999999999999999999999999
Q ss_pred EECCCCEEEEEcCCCccc
Q psy4876 572 AGADETLRLWKIFEKVKS 589 (609)
Q Consensus 572 ~s~Dg~I~iWdl~~~~~~ 589 (609)
++.||.|++||+.++...
T Consensus 1021 ~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 1021 SSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp ECSSSBEEEEETTTTEEE
T ss_pred EcCCCEEEEEECCCCceE
Confidence 999999999999887654
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=257.28 Aligned_cols=247 Identities=18% Similarity=0.272 Sum_probs=215.6
Q ss_pred eeeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEE
Q psy4876 326 IDHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHH 402 (609)
Q Consensus 326 ~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iw 402 (609)
.+.+..+. |.+.|++++| +++.+|++|+.||.|+|||+.+++....+..|...|.+++| ++.+|++++.||.|++|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 45556666 9999999999 99999999999999999999999999999999999999999 57899999999999999
Q ss_pred EcCCCC--eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCc
Q psy4876 403 DVRSRD--HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPN 480 (609)
Q Consensus 403 d~~~~~--~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 480 (609)
++.... ..+..+.+|...|.+++| ++.+|++++.|+.|++|| .+ ..+..+..|...|.+++|+|....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~------~~~~~~~~~~~~v~~~~~~~~~~~ 156 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EG------SLVYNLQAHNASVWDAKVVSFSEN 156 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TT------EEEEEEECCSSCEEEEEEEETTTT
T ss_pred EeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CC------cEEEecccCCCceeEEEEccCCCC
Confidence 997653 456778899999999999 578999999999999999 33 677888899999999999994446
Q ss_pred EEEEEeccCCCeEEEEECCCCceeEEEc--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEE
Q psy4876 481 VLASGGGTADRHIYFWNVSSGACLDSID--TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVL 558 (609)
Q Consensus 481 llasggGs~Dg~I~iwd~~t~~~~~~~~--~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~ 558 (609)
++++++ .|+.|++|| .++.+..+. +...+.+++|++++. +++ +..++.|++||+.+++.+..+.+|...|.
T Consensus 157 ~l~~~~--~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~i~ 229 (313)
T 3odt_A 157 KFLTAS--ADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FIS--CSNDGLIKLVDMHTGDVLRTYEGHESFVY 229 (313)
T ss_dssp EEEEEE--TTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEE--EETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEEEE--CCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEE--ccCCCeEEEEECCchhhhhhhhcCCceEE
Confidence 777764 899999999 455666665 456899999999998 666 45899999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 559 NLAMSPDETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 559 ~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
+++|+|++ .|++++.||.|++||+.++.....
T Consensus 230 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~ 261 (313)
T 3odt_A 230 CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQV 261 (313)
T ss_dssp EEEECTTS-CEEEEETTSEEEEECTTTCCEEEE
T ss_pred EEEEecCC-CEEEEecCCEEEEEECCCCceeEE
Confidence 99999999 599999999999999988765443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=264.77 Aligned_cols=240 Identities=13% Similarity=0.157 Sum_probs=207.4
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe---eEEEecCCCCceEEEEe--cCC-EEEEEecCCeEEEEEc-CC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK---KCRTMDGHDVRVGALAW--NTY-ILSSGSRCGNIVHHDV-RS 406 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~---~~~~l~~h~~~V~~l~~--~~~-~L~sgs~dg~I~iwd~-~~ 406 (609)
|.+.|++++|+|++.+|++|+.||.|+|||+.+++ ....+.+|...|.+++| ++. +|++|+.||.|++||+ ..
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 89 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS 89 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccC
Confidence 88999999999999999999999999999998776 34556689999999999 578 9999999999999999 77
Q ss_pred CCeeEEEEcc--CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC---------CCCCCCccceEeecCCcccEEEEEEc
Q psy4876 407 RDHKVALLQN--HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVP---------GQHTFSTQPIHSLSRHQAAVKAIAWC 475 (609)
Q Consensus 407 ~~~~~~~~~~--h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~---------~~~~~~~~~~~~~~~h~~~V~~l~~s 475 (609)
. ....+.+ |...|.+++|+| +.+|++++.|+.|++||+++ + +++..+. |...|.+++|+
T Consensus 90 ~--~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~-~~~~v~~~~~~ 159 (342)
T 1yfq_A 90 P--SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKN------LNSNNTK-VKNKIFTMDTN 159 (342)
T ss_dssp S--SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEE------SCSSSSS-SCCCEEEEEEC
T ss_pred C--ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccC------CeeeEEe-eCCceEEEEec
Confidence 5 3477788 999999999999 99999999999999999986 5 4455555 88999999999
Q ss_pred CCCCcEEEEEeccCCCeEEEEECCC-Ccee---EEEcCCCCeEEEEEcC-CCCeEEEEEecCCCeEEEEECCCC------
Q psy4876 476 PWSPNVLASGGGTADRHIYFWNVSS-GACL---DSIDTKSQVCALLWNS-DYKELVSAHGFAQNQLIIWKYPSL------ 544 (609)
Q Consensus 476 p~~~~llasggGs~Dg~I~iwd~~t-~~~~---~~~~~~~~v~sl~~s~-~g~~l~~~sG~~dg~I~Iwd~~~~------ 544 (609)
|++ ++++ +.|+.|++||+++ +... ....+...+.+++|+| ++.+++++ ..+|.|+||++...
T Consensus 160 ~~~---l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~--~~dg~i~i~~~~~~~~~~~~ 232 (342)
T 1yfq_A 160 SSR---LIVG--MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS--SIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp SSE---EEEE--ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE--ETTSEEEEEECCTTCCSTTC
T ss_pred CCc---EEEE--eCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEE--ecCCcEEEEEEcCCCccccc
Confidence 976 5555 3799999999998 5532 2223456899999999 99999984 48999999999887
Q ss_pred ceEEEEeCCCC---------CEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 545 VKVAELHGHSA---------RVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 545 ~~~~~l~~h~~---------~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
..+..+.+|.. .|.+++|+|++++|++++.||.|++||+.++....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 287 (342)
T 1yfq_A 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287 (342)
T ss_dssp TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred ccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhh
Confidence 77888888865 99999999999999999999999999998776543
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=287.73 Aligned_cols=251 Identities=17% Similarity=0.271 Sum_probs=213.4
Q ss_pred eeec-CCCCeEEEEEccCC-CEEEEEeCCCeEEEEeCCCC-----eeEEEecCCCCceEEEEe--cCCEEEEEecCCeEE
Q psy4876 330 MDLE-GNENVCSVAWIQEG-YMLGVGTSLGTVQLWDVSAK-----KKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIV 400 (609)
Q Consensus 330 ~~~~-h~~~V~~v~~spdg-~~Lasgs~dg~I~iwd~~~~-----~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~ 400 (609)
..+. |.+.|++|+|++++ ++|++|+.||.|+|||+.+. .....+.+|...|.+++| ++.+|++|+.||.|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 3455 99999999999875 89999999999999999753 456788999999999999 578999999999999
Q ss_pred EEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCC-
Q psy4876 401 HHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSP- 479 (609)
Q Consensus 401 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~- 479 (609)
+||+.++ ..+..+.+|...|.+++|+|++++|++|+.|++|++||+..... ........+|...|.+++|+|++.
T Consensus 456 vwd~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 456 LWDLAAG-VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK---YTISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp EEETTTT-EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE---EEECSSTTSCSSCEEEEEECSCSSS
T ss_pred EEECCCC-cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc---eeeccCCCCCCCcEEEEEEeCCCCc
Confidence 9999987 57788899999999999999999999999999999999865410 001112246888999999999874
Q ss_pred cEEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEE
Q psy4876 480 NVLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVL 558 (609)
Q Consensus 480 ~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~ 558 (609)
.++++|+ .|+.|++||++++++...+..| ..|.+++|+|++++|+++ +.|+.|+|||+.+++.+..+.. ...|.
T Consensus 532 ~~l~s~s--~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg--~~Dg~i~iwd~~~~~~~~~~~~-~~~v~ 606 (694)
T 3dm0_A 532 PTIVSAS--WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG--GKDGVVLLWDLAEGKKLYSLEA-NSVIH 606 (694)
T ss_dssp CEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE--ETTSBCEEEETTTTEEEECCBC-SSCEE
T ss_pred ceEEEEe--CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE--eCCCeEEEEECCCCceEEEecC-CCcEE
Confidence 4677764 8999999999999999888765 589999999999999984 4899999999999998887754 56799
Q ss_pred EEEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 559 NLAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 559 ~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
+++|+|++.+|++++ |+.|+|||+.++....
T Consensus 607 ~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~ 637 (694)
T 3dm0_A 607 ALCFSPNRYWLCAAT-EHGIKIWDLESKSIVE 637 (694)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred EEEEcCCCcEEEEEc-CCCEEEEECCCCCChh
Confidence 999999998887765 5669999998876543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=277.72 Aligned_cols=249 Identities=17% Similarity=0.226 Sum_probs=204.6
Q ss_pred eeeee-c-CCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCC---Ce---eEEEecCCCCceEEEEe--cCCEEEEEecC
Q psy4876 328 HLMDL-E-GNENVCSVAWIQ-EGYMLGVGTSLGTVQLWDVSA---KK---KCRTMDGHDVRVGALAW--NTYILSSGSRC 396 (609)
Q Consensus 328 ~l~~~-~-h~~~V~~v~~sp-dg~~Lasgs~dg~I~iwd~~~---~~---~~~~l~~h~~~V~~l~~--~~~~L~sgs~d 396 (609)
.+..+ . |.+.|++++|+| ++.+||+|+.||.|+|||+.+ +. ....+ .|...|.+++| ++.+|++|+.|
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence 44455 4 889999999999 999999999999999999876 33 23333 49999999999 47899999999
Q ss_pred CeEEEEEcC---CCCeeEEEEc----------c--CCCCeEEEE--EccCCCEEEEEeCCCcEEEEeCCCCCCCCCccce
Q psy4876 397 GNIVHHDVR---SRDHKVALLQ----------N--HTQEVCGLK--WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPI 459 (609)
Q Consensus 397 g~I~iwd~~---~~~~~~~~~~----------~--h~~~V~~l~--~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~ 459 (609)
|.|++||+. .+. ...... . +...+.++. +++++.+|++|+.|+.|++||++++ +.+
T Consensus 133 g~i~vwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~ 205 (437)
T 3gre_A 133 GQIIVLKVNHYQQES-EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL------ERL 205 (437)
T ss_dssp SEEEEEEEEEEEETT-EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC------CEE
T ss_pred CEEEEEEeccccCCc-eeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------eee
Confidence 999999995 332 222222 1 556677777 5688999999999999999999988 778
Q ss_pred EeecC--CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc--CCCCeEEEEEcC----CCCeEEEEEec
Q psy4876 460 HSLSR--HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID--TKSQVCALLWNS----DYKELVSAHGF 531 (609)
Q Consensus 460 ~~~~~--h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~--~~~~v~sl~~s~----~g~~l~~~sG~ 531 (609)
..+.. |...|.+++|+|++ .++++|+ .|+.|++||+++++++..+. ++..|.+++|+| ++.++++ |.
T Consensus 206 ~~~~~~~h~~~v~~~~~s~~~-~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s--~~ 280 (437)
T 3gre_A 206 QIIENSPRHGAVSSICIDEEC-CVLILGT--TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVG--GS 280 (437)
T ss_dssp EEEECCGGGCCEEEEEECTTS-CEEEEEE--TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEE--ES
T ss_pred EEEccCCCCCceEEEEECCCC-CEEEEEc--CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEE--Ec
Confidence 88887 88999999999997 4666663 89999999999999999875 455899997765 5667777 66
Q ss_pred CCCeEEEEECCCCceEEEEeCC--------------------------CCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 532 AQNQLIIWKYPSLVKVAELHGH--------------------------SARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 532 ~dg~I~Iwd~~~~~~~~~l~~h--------------------------~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
.|+.|+|||+.+++.+..+.+| ...|++++|+ ++.+|++|+.|+.|++||+.+
T Consensus 281 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 281 SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC
T ss_pred CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC
Confidence 8999999999999988888754 4558889999 789999999999999999998
Q ss_pred Cccch
Q psy4876 586 KVKSK 590 (609)
Q Consensus 586 ~~~~~ 590 (609)
++...
T Consensus 360 ~~~~~ 364 (437)
T 3gre_A 360 LSSSK 364 (437)
T ss_dssp GGGCE
T ss_pred cccce
Confidence 77554
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-30 Score=299.50 Aligned_cols=280 Identities=14% Similarity=0.117 Sum_probs=204.4
Q ss_pred eeEEEEEecCC--C-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeee---------------
Q psy4876 270 YYLNLIDWSHF--N-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMD--------------- 331 (609)
Q Consensus 270 ~~v~~l~wsp~--~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------- 331 (609)
..|.+|+|+|+ + +++++.|+.| |||+.+ +.......
T Consensus 152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~ 205 (902)
T 2oaj_A 152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE-------------------------NEIKQSFIYELPPFAPGGDFSEK 205 (902)
T ss_dssp CCCCEEEEETTEEEEEEEECSSCEE-EEETTT-------------------------TEEEEEECCCBCTTCCCSTTCCC
T ss_pred CCeEEEEEccCCCCEEEEEeCCCcE-EEECCC-------------------------CceEEEEecccCCcCCCcccccc
Confidence 35889999996 2 6667788999 999987 22211111
Q ss_pred -ec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEE--ec---C-------------CCCceEEEEe----cC
Q psy4876 332 -LE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRT--MD---G-------------HDVRVGALAW----NT 387 (609)
Q Consensus 332 -~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~--l~---~-------------h~~~V~~l~~----~~ 387 (609)
.. |...|.+++|+|+|.+||+|+.||.|+|||+.+++.+.. +. . |...|.+++| ++
T Consensus 206 ~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~p 285 (902)
T 2oaj_A 206 TNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNP 285 (902)
T ss_dssp TTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSST
T ss_pred cccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCC
Confidence 11 457899999999999999999999999999999887653 21 2 3457888888 22
Q ss_pred ---CEEEEEecC-----CeEEEEE--------------------------------------------------------
Q psy4876 388 ---YILSSGSRC-----GNIVHHD-------------------------------------------------------- 403 (609)
Q Consensus 388 ---~~L~sgs~d-----g~I~iwd-------------------------------------------------------- 403 (609)
.+|++|+.+ ..|.+|+
T Consensus 286 d~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~ 365 (902)
T 2oaj_A 286 EYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPG 365 (902)
T ss_dssp TEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCS
T ss_pred CCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCce
Confidence 456666443 1444444
Q ss_pred ---------------cCCCCeeEE----------------------------------------EEccCCCCeEEEEEcc
Q psy4876 404 ---------------VRSRDHKVA----------------------------------------LLQNHTQEVCGLKWSP 428 (609)
Q Consensus 404 ---------------~~~~~~~~~----------------------------------------~~~~h~~~V~~l~~sp 428 (609)
+.++..... .+.+|...+.+++|+|
T Consensus 366 ~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~sp 445 (902)
T 2oaj_A 366 LILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAE 445 (902)
T ss_dssp EEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCS
T ss_pred eEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccc
Confidence 322210000 0122333344455678
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEe--ec-----CCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 429 DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHS--LS-----RHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 429 dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~--~~-----~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
++++||+|+.|++|++||+..+.... ..... +. +|...|.+++|+|++. +||+|+ .|++|+|||+.++
T Consensus 446 dg~~laSgs~DgtVrlWd~~~g~~~~--~~~~~~~l~~~~~~~h~~~V~svafspdg~-~LAsgs--~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 446 YGTAFITGHSNGSVRIYDASHGDIQD--NASFEVNLSRTLNKAKELAVDKISFAAETL-ELAVSI--ETGDVVLFKYEVN 520 (902)
T ss_dssp EEEEEEEEETTSEEEEEESSCCTTTT--TBCEEEEHHHHTTCSSSCCEEEEEEETTTT-EEEEEE--TTSCEEEEEEEEC
T ss_pred cCcEEEEecCCCcEEEEECCCccccC--CceEEeechhhcCCCCCCceeEEEecCCCC-eEEEEe--cCcEEEEEEecCc
Confidence 99999999999999999998873210 01111 12 7889999999999985 677764 8999999999866
Q ss_pred c---------------------------------------------eeEEEc-CCCCeEEEEEcCCCCeEEEEEecCCCe
Q psy4876 502 A---------------------------------------------CLDSID-TKSQVCALLWNSDYKELVSAHGFAQNQ 535 (609)
Q Consensus 502 ~---------------------------------------------~~~~~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~ 535 (609)
+ ++..+. +...|++++|+|+| +|++ |+.|++
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAs--gs~D~t 597 (902)
T 2oaj_A 521 QFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGI--AYAAGS 597 (902)
T ss_dssp CC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEE--EETTSE
T ss_pred cccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEE--EeCCCc
Confidence 2 355665 44699999999999 8888 558999
Q ss_pred EEEEECCCCceEE--E---Ee-CCCCCEEEEEEe-----CCC---CEEEEEECCCCEEEEEc
Q psy4876 536 LIIWKYPSLVKVA--E---LH-GHSARVLNLAMS-----PDE---TTVLSAGADETLRLWKI 583 (609)
Q Consensus 536 I~Iwd~~~~~~~~--~---l~-~h~~~V~~l~~s-----pdg---~~L~s~s~Dg~I~iWdl 583 (609)
|+|||+.+...+. . +. +|.+.|++|+|+ ||| .+|++|+.|++|++||+
T Consensus 598 v~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 598 LMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred EEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 9999998877654 2 32 899999999999 886 89999999999999999
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-30 Score=265.54 Aligned_cols=246 Identities=16% Similarity=0.280 Sum_probs=206.1
Q ss_pred CCCCeEEEEEccCCCEE-EEEeC---CCeEEEEeCCCCeeEEEe-cCCCCceEEEEec-----CCEEEEEecCCeEEEEE
Q psy4876 334 GNENVCSVAWIQEGYML-GVGTS---LGTVQLWDVSAKKKCRTM-DGHDVRVGALAWN-----TYILSSGSRCGNIVHHD 403 (609)
Q Consensus 334 h~~~V~~v~~spdg~~L-asgs~---dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~~-----~~~L~sgs~dg~I~iwd 403 (609)
|...|.+++|+|++..+ ++|+. ||.|+|||+.+++..... .+|...|.+++|+ +.+|++|+.||.|++||
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 96 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN 96 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence 99999999999999655 55655 899999999988765443 3799999999993 48999999999999999
Q ss_pred cCCCCeeEEEEccCCCCeEEEEE------ccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcc----cEEEEE
Q psy4876 404 VRSRDHKVALLQNHTQEVCGLKW------SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA----AVKAIA 473 (609)
Q Consensus 404 ~~~~~~~~~~~~~h~~~V~~l~~------spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~----~V~~l~ 473 (609)
+.+....+..+.+|...|.+++| +|++++|++|+.||.|++||+..+. .++..+..|.+ .|.+++
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~-----~~~~~~~~~~~~~~~~v~~~~ 171 (357)
T 3i2n_A 97 LEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD-----DPVANMEPVQGENKRDCWTVA 171 (357)
T ss_dssp TTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS-----SCSEEECCCTTSCCCCEEEEE
T ss_pred CCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC-----CcceeccccCCCCCCceEEEE
Confidence 99875478889999999999955 6899999999999999999999873 25666655544 789998
Q ss_pred ----EcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcC---CCCeEEEEEecCCCeEEEEECCCCce
Q psy4876 474 ----WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNS---DYKELVSAHGFAQNQLIIWKYPSLVK 546 (609)
Q Consensus 474 ----~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~---~g~~l~~~sG~~dg~I~Iwd~~~~~~ 546 (609)
|+|++. ++++++ .|+.|++||+++++......+...+.+++|+| ++.+++++ ..|+.|++||+.++..
T Consensus 172 ~~~~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~ 246 (357)
T 3i2n_A 172 FGNAYNQEER-VVCAGY--DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVAT--SLEGKFHVFDMRTQHP 246 (357)
T ss_dssp EECCCC-CCC-EEEEEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEE--ESTTEEEEEEEEEEET
T ss_pred EEeccCCCCC-EEEEEc--cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEE--CCCCeEEEEeCcCCCc
Confidence 677774 566653 79999999999999888877888999999999 89999884 4899999999987655
Q ss_pred EEEE-----eCCCCCEEEEEEeCCCC-EEEEEECCCCEEEEEcCCCccc
Q psy4876 547 VAEL-----HGHSARVLNLAMSPDET-TVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 547 ~~~l-----~~h~~~V~~l~~spdg~-~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
+..+ .+|...|.+++|+|++. +|++++.||.|++||+......
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 4444 48999999999999998 8999999999999999876543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-29 Score=265.06 Aligned_cols=277 Identities=13% Similarity=0.078 Sum_probs=230.6
Q ss_pred EEEEEecCCC-eEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeee---ec-CCCCeEEEEEcc
Q psy4876 272 LNLIDWSHFN-VLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMD---LE-GNENVCSVAWIQ 345 (609)
Q Consensus 272 v~~l~wsp~~-lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~-h~~~V~~v~~sp 345 (609)
+.+++|+|++ +++ ++.++.|++||+.+ +....... +. |...|.+++|++
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~-------------------------g~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINS-------------------------GQTVRLSPPEKYKKKLGFVETISIPE 179 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTT-------------------------CCEEEECCCHHHHTTCCEEEEEEEGG
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCC-------------------------CeEeeecCcccccccCCceeEEEEcC
Confidence 4579999976 444 34467899999988 54443222 22 788999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEE-EEEecCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYIL-SSGSRCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
++.++++++.|+.|++||+.+++.+..+..|...+.+++|+ +..+ ++++.|+.|++||++++ ..+..+.. ...+.
T Consensus 180 ~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~-~~~~~~~~-~~~~~ 257 (433)
T 3bws_A 180 HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK-LEIRKTDK-IGLPR 257 (433)
T ss_dssp GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT-EEEEECCC-CSEEE
T ss_pred CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC-cEEEEecC-CCCce
Confidence 99999999999999999999999999999999999999994 5666 55558999999999986 45555554 45699
Q ss_pred EEEEccCCCEEEEEe--------CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEE
Q psy4876 423 GLKWSPDGRYLASGG--------NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIY 494 (609)
Q Consensus 423 ~l~~spdg~~lasgs--------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~ 494 (609)
+++|+|+|++|++++ .|+.|++||+.++ +.+..+ .|...+.+++|+|++..+++++ +.|+.|+
T Consensus 258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~------~~~~~~-~~~~~~~~~~~~~~g~~l~~~~--~~~~~v~ 328 (433)
T 3bws_A 258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE------KLIDTI-GPPGNKRHIVSGNTENKIYVSD--MCCSKIE 328 (433)
T ss_dssp EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT------EEEEEE-EEEECEEEEEECSSTTEEEEEE--TTTTEEE
T ss_pred EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC------cEEeec-cCCCCcceEEECCCCCEEEEEe--cCCCEEE
Confidence 999999999999988 5889999999977 444443 4566889999999998888876 4799999
Q ss_pred EEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecC-------------CCeEEEEECCCCceEEEEeCCCCCEEEEE
Q psy4876 495 FWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFA-------------QNQLIIWKYPSLVKVAELHGHSARVLNLA 561 (609)
Q Consensus 495 iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~-------------dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~ 561 (609)
+||+.+++.+..+.....+.+++|+|++++++++.... ||.|++||..+++.+..+.. ...+.+++
T Consensus 329 v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~ 407 (433)
T 3bws_A 329 VYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLD 407 (433)
T ss_dssp EEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEE
T ss_pred EEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEE
Confidence 99999999999998888999999999999998865322 57999999999999988876 45799999
Q ss_pred EeCCCCEEEEEEC-CCCEEEEEcCC
Q psy4876 562 MSPDETTVLSAGA-DETLRLWKIFE 585 (609)
Q Consensus 562 ~spdg~~L~s~s~-Dg~I~iWdl~~ 585 (609)
|+|+|++|++++. |+.|++|++.+
T Consensus 408 ~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 408 VSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp ECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EcCCCCEEEEEECCCCeEEEEEecC
Confidence 9999999998875 99999999864
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=261.39 Aligned_cols=246 Identities=19% Similarity=0.332 Sum_probs=206.0
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|.+++|+|++ +++++.|+.|+|||+.. .....+..+. |...|++++|++
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-------------------------~~~~~~~~~~~h~~~v~~~~~~~ 65 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEG-------------------------ETHKLIDTLTGHEGPVWRVDWAH 65 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEET-------------------------TEEEEEEEECCCSSCEEEEEECC
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCC-------------------------CcceeeeEecCCCCcEEEEEeCC
Confidence 3458999999986 66677899999999975 4555666666 999999999998
Q ss_pred C--CCEEEEEeCCCeEEEEeCCCCe--eEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCCC-eeEEEEcc
Q psy4876 346 E--GYMLGVGTSLGTVQLWDVSAKK--KCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSRD-HKVALLQN 416 (609)
Q Consensus 346 d--g~~Lasgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~~-~~~~~~~~ 416 (609)
+ +++|++|+.||.|+|||+.+++ .+..+..|...|.+++|+ +.+|++++.||.|++||++... .....+..
T Consensus 66 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 145 (379)
T 3jrp_A 66 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA 145 (379)
T ss_dssp GGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC
T ss_pred CCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC
Confidence 7 8999999999999999999987 788888999999999994 6799999999999999998763 24456778
Q ss_pred CCCCeEEEEEcc-------------CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC--CcE
Q psy4876 417 HTQEVCGLKWSP-------------DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS--PNV 481 (609)
Q Consensus 417 h~~~V~~l~~sp-------------dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~~l 481 (609)
|...|.+++|+| ++.+|++|+.|+.|++||++.+... ...+..+.+|...|.+++|+|++ ..+
T Consensus 146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~~ 223 (379)
T 3jrp_A 146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSY 223 (379)
T ss_dssp CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc--eeeEEEEecccCcEeEEEECCCCCCCCe
Confidence 999999999999 6999999999999999999876321 13556788899999999999994 467
Q ss_pred EEEEeccCCCeEEEEECCCCce---eEEEc---CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc
Q psy4876 482 LASGGGTADRHIYFWNVSSGAC---LDSID---TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV 545 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t~~~---~~~~~---~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~ 545 (609)
+++++ .|+.|++||+.++.. ...+. +...+.+++|+|++++|++++ .||.|+||++....
T Consensus 224 l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 224 LASVS--QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG--GDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEE--TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE--SSSSEEEEEEEETT
T ss_pred EEEEe--CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec--CCCcEEEEeCCCCC
Confidence 77764 899999999998742 22222 445899999999999999854 79999999987543
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-30 Score=265.97 Aligned_cols=242 Identities=16% Similarity=0.267 Sum_probs=207.4
Q ss_pred CCCCeEEEEEccC----CCEEEEEeCCCeEEEEeCCCCeeEEEecC-----CCCceEEEEec------CCEEEEEecCCe
Q psy4876 334 GNENVCSVAWIQE----GYMLGVGTSLGTVQLWDVSAKKKCRTMDG-----HDVRVGALAWN------TYILSSGSRCGN 398 (609)
Q Consensus 334 h~~~V~~v~~spd----g~~Lasgs~dg~I~iwd~~~~~~~~~l~~-----h~~~V~~l~~~------~~~L~sgs~dg~ 398 (609)
|.+.|++++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|.+++|+ +.+|++|+.||.
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~ 96 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGI 96 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCE
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCE
Confidence 8999999999984 45677777778999999998877766653 56789999994 459999999999
Q ss_pred EEEEEcCCCCeeEEEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee---cCCcccEEEEEE
Q psy4876 399 IVHHDVRSRDHKVALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL---SRHQAAVKAIAW 474 (609)
Q Consensus 399 I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~---~~h~~~V~~l~~ 474 (609)
|++||+.++ ..+..+.+|...|.+++|+| ++.+|++|+.||.|++||++++ +.+..+ ..|...|.+++|
T Consensus 97 i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 97 IRIINPITM-QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD------TLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp EEEECTTTC-CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT------EEEEEECSTTSCSSCEEEEEE
T ss_pred EEEEEchhc-eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC------eEEEEecccccccCceeEEEE
Confidence 999999987 46778889999999999999 9999999999999999999987 666666 689999999999
Q ss_pred cCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc-----------------------------CCCCeEEEEEcCCCCeE
Q psy4876 475 CPWSPNVLASGGGTADRHIYFWNVSSGACLDSID-----------------------------TKSQVCALLWNSDYKEL 525 (609)
Q Consensus 475 sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~-----------------------------~~~~v~sl~~s~~g~~l 525 (609)
+|++. ++++++ .|+.|++||+++++.+..+. +...|.+++|+ +.++
T Consensus 170 ~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 244 (366)
T 3k26_A 170 DLLGE-KIMSCG--MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLI 244 (366)
T ss_dssp CTTSS-EEEEEE--TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEE
T ss_pred CCCCC-EEEEec--CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEE
Confidence 99885 555553 79999999999876554333 45689999999 6777
Q ss_pred EEEEecCCCeEEEEECCCCce--------------EEEEeCCCCCEEEEEEeCC--CCEEEEEECCCCEEEEEcCCCccc
Q psy4876 526 VSAHGFAQNQLIIWKYPSLVK--------------VAELHGHSARVLNLAMSPD--ETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 526 ~~~sG~~dg~I~Iwd~~~~~~--------------~~~l~~h~~~V~~l~~spd--g~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
++ ++.|+.|++||+.++.. +..+.+|...|.+++|+|+ +.+|++++.||.|++||+..+...
T Consensus 245 ~~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 322 (366)
T 3k26_A 245 LS--KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH 322 (366)
T ss_dssp EE--ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred EE--EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc
Confidence 77 55899999999987644 7788899999999999999 999999999999999999987644
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-30 Score=275.79 Aligned_cols=246 Identities=17% Similarity=0.205 Sum_probs=202.0
Q ss_pred CCCCeEEEEEccC-CCEEEEEeCCCeEEEEeCCCCee--EEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCC
Q psy4876 334 GNENVCSVAWIQE-GYMLGVGTSLGTVQLWDVSAKKK--CRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSR 407 (609)
Q Consensus 334 h~~~V~~v~~spd-g~~Lasgs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~ 407 (609)
|...|++|+|+|. +++||+|+.||.|+|||+.+++. ...+.+|...|.+|+|+ +.+|++|+.||+|++||++..
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~ 197 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN 197 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence 7889999999994 68999999999999999987654 34456899999999994 689999999999999999875
Q ss_pred CeeEEEEc--cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEE
Q psy4876 408 DHKVALLQ--NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 408 ~~~~~~~~--~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 485 (609)
. ...... .+...+++++|+|++.+|++|+.||.|++||++. +.+..+.+|...|.+++|+|++..++++|
T Consensus 198 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-------~~~~~~~~h~~~v~~v~~~p~~~~~~~s~ 269 (435)
T 4e54_B 198 I-LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-------KELWNLRMHKKKVTHVALNPCCDWFLATA 269 (435)
T ss_dssp E-EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-------CBCCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred c-eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-------ceeEEEecccceEEeeeecCCCceEEEEe
Confidence 2 222222 2345678999999999999999999999999874 45677889999999999999998899887
Q ss_pred eccCCCeEEEEECCCCceeEEE----cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCC------
Q psy4876 486 GGTADRHIYFWNVSSGACLDSI----DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSA------ 555 (609)
Q Consensus 486 gGs~Dg~I~iwd~~t~~~~~~~----~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~------ 555 (609)
+ .|+.|++||+++++....+ .+...|.+++|+|++.+|+++ +.|+.|+|||+.++.....+..|..
T Consensus 270 s--~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~--~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 345 (435)
T 4e54_B 270 S--VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT--DQKSEIRVYSASQWDCPLGLIPHPHRHFQHL 345 (435)
T ss_dssp E--TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE--ESSSCEEEEESSSSSSEEEECCCCCCCCSSS
T ss_pred c--CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEE--cCCCEEEEEECCCCccceEEecccccccccc
Confidence 5 8999999999987654433 345689999999999999984 4899999999999998888876653
Q ss_pred CEEEEEEeCCCCEEEEEEC------------CCCEEEEEcCCCccchh
Q psy4876 556 RVLNLAMSPDETTVLSAGA------------DETLRLWKIFEKVKSKK 591 (609)
Q Consensus 556 ~V~~l~~spdg~~L~s~s~------------Dg~I~iWdl~~~~~~~k 591 (609)
.+..+.|+|++.++++++. ++.|++||+.++.....
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~ 393 (435)
T 4e54_B 346 TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ 393 (435)
T ss_dssp CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE
Confidence 2445678888877777653 35799999988775543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-29 Score=253.67 Aligned_cols=250 Identities=18% Similarity=0.294 Sum_probs=205.4
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
.-.|++|+|+|++ +++++.||.|+|||+.+.. .....+..+. |...|++++|+|
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----------------------~~~~~~~~~~~~~~~v~~~~~~~ 67 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT-----------------------SNWELSDSWRAHDSSIVAIDWAS 67 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS-----------------------CCEEEEEEEECCSSCEEEEEECC
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC-----------------------CcceecceeccCCCcEEEEEEcC
Confidence 3458999999986 6678889999999998621 2234455555 899999999999
Q ss_pred --CCCEEEEEeCCCeEEEEeCCCC---------eeEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCCCee
Q psy4876 346 --EGYMLGVGTSLGTVQLWDVSAK---------KKCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 346 --dg~~Lasgs~dg~I~iwd~~~~---------~~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
++.+|++|+.||.|+|||+.++ +.+..+..|...|.+++|+ +.+|++++.||.|++||+++...
T Consensus 68 ~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~- 146 (351)
T 3f3f_A 68 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD- 146 (351)
T ss_dssp GGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC-
T ss_pred CCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH-
Confidence 6999999999999999999887 6688899999999999994 77999999999999999987642
Q ss_pred EEEE-------------ccCCCCeEEEEEccC---CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEE
Q psy4876 411 VALL-------------QNHTQEVCGLKWSPD---GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAW 474 (609)
Q Consensus 411 ~~~~-------------~~h~~~V~~l~~spd---g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 474 (609)
+..+ ..|...+.+++|+|+ +.+|++++.|+.+.+|+...+.. ..+..+.+|...|.+++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~i~~~~~ 222 (351)
T 3f3f_A 147 LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL----HVAAKLPGHKSLIRSISW 222 (351)
T ss_dssp TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE----EEEEECCCCCSCEEEEEE
T ss_pred hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce----eeeeecCCCCcceeEEEE
Confidence 1111 257889999999997 99999999999998888776621 347788899999999999
Q ss_pred cCCCC---cEEEEEeccCCCeEEEEECCCC----------------------------------------------ceeE
Q psy4876 475 CPWSP---NVLASGGGTADRHIYFWNVSSG----------------------------------------------ACLD 505 (609)
Q Consensus 475 sp~~~---~llasggGs~Dg~I~iwd~~t~----------------------------------------------~~~~ 505 (609)
+|++. .++++|+ .|+.|++||++++ +.+.
T Consensus 223 ~p~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (351)
T 3f3f_A 223 APSIGRWYQLIATGC--KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLS 300 (351)
T ss_dssp CCCSSCSSEEEEEEE--TTSCEEEEEEEECC---------------------------------------CCSEEEEEEE
T ss_pred CCCCCCcceEEEEEc--CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEE
Confidence 99974 5777774 8999999999875 4455
Q ss_pred EEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEE
Q psy4876 506 SIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL 550 (609)
Q Consensus 506 ~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l 550 (609)
.+..+ ..|.+++|+|++++|+++ +.||.|+||++.++..+..+
T Consensus 301 ~~~~h~~~v~~~~~s~~~~~l~s~--~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 301 EHDDHNGEVWSVSWNLTGTILSSA--GDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EECTTSSCEEEEEECSSSCCEEEE--ETTSCEEEEEECTTSCEEEE
T ss_pred EEecccccEEEEEEcCCCCEEEEe--cCCCcEEEEecCcCcchhhe
Confidence 55544 589999999999999985 48999999999887655443
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=258.48 Aligned_cols=281 Identities=13% Similarity=0.082 Sum_probs=214.7
Q ss_pred eeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 270 YYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 270 ~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
..|++++|+|++ +++++.+..++||++.+ +.... ... ...+..++|.++++
T Consensus 20 ~~V~~v~fs~dg~~la~g~~~~~~iw~~~~-------------------------~~~~~--~~~-~~~~~~~~~~~~~~ 71 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTLKSFEIYNVHP-------------------------VAHIM--SQE-MRHLSKVRMLHRTN 71 (355)
T ss_dssp CCCCEEEECTTSSEEEEECSSEEEEEEETT-------------------------EEEEE--EEE-CSCCCEEEECTTSS
T ss_pred CceEEEEECCCCCEEEEEcCCEEEEEecCC-------------------------cceee--eee-cCCeEEEEEcCCCC
Confidence 458899999997 78888888899999876 33322 222 23578899999888
Q ss_pred EE-EEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEc
Q psy4876 349 ML-GVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWS 427 (609)
Q Consensus 349 ~L-asgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 427 (609)
.+ ++|+.|+.|+|||+.+++.+..+. |...|.++.|+++.++++. ++.|++||+.+....+..+.. ....++++
T Consensus 72 ~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s 146 (355)
T 3vu4_A 72 YVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCEFS 146 (355)
T ss_dssp EEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEEEE
T ss_pred EEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEecc---CCceEEEE
Confidence 77 457778999999999999999887 6779999999988777764 789999999886223333332 34455667
Q ss_pred cCCCEEEE--EeCCCcEEEEeCCCCCCC---------CCccc-eEeecCCcccEEEEEEcCCCCcEEEEEeccCCCe-EE
Q psy4876 428 PDGRYLAS--GGNDNLLNIWSGVPGQHT---------FSTQP-IHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH-IY 494 (609)
Q Consensus 428 pdg~~las--gs~Dg~I~iwd~~~~~~~---------~~~~~-~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~-I~ 494 (609)
+ .++++ |+.||.|++||+.++... ....+ +..+.+|...|.+++|+|++ .+|++|+ .|++ |+
T Consensus 147 ~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s--~d~~~v~ 221 (355)
T 3vu4_A 147 N--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCS--QDGTIIR 221 (355)
T ss_dssp T--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS-SEEEEEE--TTCSEEE
T ss_pred c--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEe--CCCCEEE
Confidence 6 56666 578999999999976310 00012 67889999999999999988 5677764 8998 99
Q ss_pred EEECCCCceeEEEc---CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce--EEEE-------------------
Q psy4876 495 FWNVSSGACLDSID---TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK--VAEL------------------- 550 (609)
Q Consensus 495 iwd~~t~~~~~~~~---~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~--~~~l------------------- 550 (609)
+||+++++++..+. +...|.+++|+|++++|+++ +.|+.|+|||+..... ...+
T Consensus 222 iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~--s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (355)
T 3vu4_A 222 VFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVV--SDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFK 299 (355)
T ss_dssp EEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEE--ETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEE
T ss_pred EEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEE--ECCCEEEEEEccCCCCcccccccceeeccccccccceeEEE
Confidence 99999999999997 45689999999999999995 4899999999975431 1111
Q ss_pred --eCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 551 --HGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 551 --~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
..+......++|++||++|++++.||.+++|++..++..+
T Consensus 300 ~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~~ 341 (355)
T 3vu4_A 300 LSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEME 341 (355)
T ss_dssp CCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTTT
T ss_pred eccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCCc
Confidence 0112234679999999999999999999999998766543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=264.20 Aligned_cols=235 Identities=20% Similarity=0.382 Sum_probs=208.5
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~ 413 (609)
|...|.+++| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|++.+|++|+.||.|++||+.++ ..+..
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~ 208 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG-EMLNT 208 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSC-CEEEE
T ss_pred CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCC-cEEEE
Confidence 6678998887 78999999999999999999999999999999999999999999999999999999999987 47888
Q ss_pred EccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeE
Q psy4876 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHI 493 (609)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I 493 (609)
+.+|...|.+++|+ +.+|++|+.||.|++||+.++... .....+.+|...|.+++| ++ .++++|+ .|+.|
T Consensus 209 ~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~~~~~v~~~~~--~~-~~l~s~~--~dg~i 278 (435)
T 1p22_A 209 LIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDI---TLRRVLVGHRAAVNVVDF--DD-KYIVSAS--GDRTI 278 (435)
T ss_dssp ECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCC---EEEEEECCCSSCEEEEEE--ET-TEEEEEE--TTSEE
T ss_pred EcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCc---eeeeEecCCCCcEEEEEe--CC-CEEEEEe--CCCeE
Confidence 99999999999997 459999999999999999887321 223677889999999999 34 4666664 79999
Q ss_pred EEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEE
Q psy4876 494 YFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSA 572 (609)
Q Consensus 494 ~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~ 572 (609)
++||+.+++++..+..+ ..+.++.| ++.++++ |+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++|
T Consensus 279 ~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~--g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg 352 (435)
T 1p22_A 279 KVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVS--GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG 352 (435)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEE--EETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred EEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEE--EeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence 99999999999998865 58999998 4677877 458999999999999999999999999999999 78899999
Q ss_pred ECCCCEEEEEcCCCc
Q psy4876 573 GADETLRLWKIFEKV 587 (609)
Q Consensus 573 s~Dg~I~iWdl~~~~ 587 (609)
+.||.|++||+..+.
T Consensus 353 ~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 353 AYDGKIKVWDLVAAL 367 (435)
T ss_dssp ETTSCEEEEEHHHHT
T ss_pred eCCCcEEEEECCCCC
Confidence 999999999997654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=9e-28 Score=253.18 Aligned_cols=270 Identities=14% Similarity=0.139 Sum_probs=222.4
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEE-EEEeCCCeEE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYML-GVGTSLGTVQ 360 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~L-asgs~dg~I~ 360 (609)
+++++.|+.|++||+.+ ++.. ..+.+...+.+++|+|+|++| ++++.|+.|+
T Consensus 5 ~vs~~~d~~v~v~d~~~-------------------------~~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~ 57 (391)
T 1l0q_A 5 YIANSESDNISVIDVTS-------------------------NKVT--ATIPVGSNPMGAVISPDGTKVYVANAHSNDVS 57 (391)
T ss_dssp EEEETTTTEEEEEETTT-------------------------TEEE--EEEECSSSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred EEEcCCCCEEEEEECCC-------------------------CeEE--EEeecCCCcceEEECCCCCEEEEECCCCCeEE
Confidence 45567799999999987 5433 344444669999999999877 5666899999
Q ss_pred EEeCCCCeeEEEecCCCCceEEEEec--CCEE-EEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEE-EEE
Q psy4876 361 LWDVSAKKKCRTMDGHDVRVGALAWN--TYIL-SSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYL-ASG 436 (609)
Q Consensus 361 iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-asg 436 (609)
+||+.+++.+..+..+. .+.+++|+ +..| ++++.++.|++||+.++ ..+..+.. ...+.+++|+|+|++| +++
T Consensus 58 v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~ 134 (391)
T 1l0q_A 58 IIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN-TVAGTVKT-GKSPLGLALSPDGKKLYVTN 134 (391)
T ss_dssp EEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEEC-SSSEEEEEECTTSSEEEEEE
T ss_pred EEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCC-eEEEEEeC-CCCcceEEECCCCCEEEEEe
Confidence 99999999999888665 89999994 6666 45557799999999987 45555554 4578999999999977 678
Q ss_pred eCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEE
Q psy4876 437 GNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCAL 516 (609)
Q Consensus 437 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl 516 (609)
+.|+.|++||+.++ +.+..+..+ ..+.+++|+|++..+++++ ..++.|++||+.+++++..+..+..+.++
T Consensus 135 ~~~~~v~~~d~~~~------~~~~~~~~~-~~~~~~~~~~dg~~l~~~~--~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 205 (391)
T 1l0q_A 135 NGDKTVSVINTVTK------AVINTVSVG-RSPKGIAVTPDGTKVYVAN--FDSMSISVIDTVTNSVIDTVKVEAAPSGI 205 (391)
T ss_dssp TTTTEEEEEETTTT------EEEEEEECC-SSEEEEEECTTSSEEEEEE--TTTTEEEEEETTTTEEEEEEECSSEEEEE
T ss_pred CCCCEEEEEECCCC------cEEEEEecC-CCcceEEECCCCCEEEEEe--CCCCEEEEEECCCCeEEEEEecCCCccce
Confidence 88999999999987 566666655 4579999999998777776 37899999999999999998888899999
Q ss_pred EEcCCCCeEEEEEec-CCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEE-EEEECCCCEEEEEcCCCccchh
Q psy4876 517 LWNSDYKELVSAHGF-AQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTV-LSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 517 ~~s~~g~~l~~~sG~-~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L-~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
+|+|++++++++... .++.|++||+.+++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++....
T Consensus 206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~ 281 (391)
T 1l0q_A 206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITAT 281 (391)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEE
Confidence 999999999886421 58999999999999998888765 57899999999987 5668899999999998765543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=291.36 Aligned_cols=246 Identities=20% Similarity=0.316 Sum_probs=211.0
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCC--CCeeEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVS--AKKKCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSR 407 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~--~~~~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~ 407 (609)
|.+.|++++|+|+|++|++|+.||.|+|||+. +++.+..+.+|...|.+++|+ +.+|++|+.||.|++||+.++
T Consensus 8 H~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~ 87 (753)
T 3jro_A 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 87 (753)
T ss_dssp CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT
T ss_pred CcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC
Confidence 89999999999999999999999999999998 557788999999999999994 789999999999999999986
Q ss_pred C-eeEEEEccCCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCC-------
Q psy4876 408 D-HKVALLQNHTQEVCGLKWSPD--GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW------- 477 (609)
Q Consensus 408 ~-~~~~~~~~h~~~V~~l~~spd--g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~------- 477 (609)
. ..+..+.+|...|.+++|+|+ +.+|++|+.||.|++||++.+.. .....+.+|...|.+++|+|.
T Consensus 88 ~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~----~~~~~~~~~~~~v~~l~~~p~~~~~~~~ 163 (753)
T 3jro_A 88 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT----TSPIIIDAHAIGVNSASWAPATIEEDGE 163 (753)
T ss_dssp EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC----CCCEEEECCSSCEEEEEECCCC------
T ss_pred cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC----cceeEeecCCCceEEEEecCcccccccc
Confidence 3 256778889999999999999 99999999999999999987632 344566789999999999995
Q ss_pred -----CCcEEEEEeccCCCeEEEEECCCC----ceeEEEcC-CCCeEEEEEcCC---CCeEEEEEecCCCeEEEEECCCC
Q psy4876 478 -----SPNVLASGGGTADRHIYFWNVSSG----ACLDSIDT-KSQVCALLWNSD---YKELVSAHGFAQNQLIIWKYPSL 544 (609)
Q Consensus 478 -----~~~llasggGs~Dg~I~iwd~~t~----~~~~~~~~-~~~v~sl~~s~~---g~~l~~~sG~~dg~I~Iwd~~~~ 544 (609)
+..++++|+ .||.|++||++++ .+...+.. ...|.+++|+|+ +.+++++ +.||.|++||+.++
T Consensus 164 ~~~~~d~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~--s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 164 HNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV--SQDRTCIIWTQDNE 239 (753)
T ss_dssp ---CGGGCCEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE--ESSSCEEEEEESSS
T ss_pred cccCCCCCEEEEEE--CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE--ecCCEEEEecCCCC
Confidence 235666664 7999999999877 34455554 458999999999 8888884 48999999999876
Q ss_pred c-----eEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 545 V-----KVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 545 ~-----~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
. .+.....|...|++++|+|+|.+|++++.||.|++|++....
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 4 333335688999999999999999999999999999998543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=260.06 Aligned_cols=246 Identities=9% Similarity=0.047 Sum_probs=175.3
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEE-----EecCCCCceEEEEe----------cCCEEEEEecCCeE
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCR-----TMDGHDVRVGALAW----------NTYILSSGSRCGNI 399 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~-----~l~~h~~~V~~l~~----------~~~~L~sgs~dg~I 399 (609)
...+....+.+++.+||+|+.|++|+|||+.+++... .+.+|...|.+++| ++++|++|+.|++|
T Consensus 89 ~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv 168 (393)
T 4gq1_A 89 DGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL 168 (393)
T ss_dssp --------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred CCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence 3344444555667899999999999999998876533 46789999999999 35799999999999
Q ss_pred EEEEcCCCCeeEEEEccCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCCCCCCc-------------------cce
Q psy4876 400 VHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR-YLASGGNDNLLNIWSGVPGQHTFST-------------------QPI 459 (609)
Q Consensus 400 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~lasgs~Dg~I~iwd~~~~~~~~~~-------------------~~~ 459 (609)
++||+.+.. .+..+..|...|.+++|+|++. +|++|+.|++|++||++++...... ...
T Consensus 169 ~~Wd~~~~~-~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 169 IIWRLTDEG-PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp EEEEEETTE-EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred EEEECCCCc-eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 999998864 5666777899999999999874 7999999999999999877431110 011
Q ss_pred EeecCCcccEEEEEEc-CCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC-------------------CCeEEEEEc
Q psy4876 460 HSLSRHQAAVKAIAWC-PWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK-------------------SQVCALLWN 519 (609)
Q Consensus 460 ~~~~~h~~~V~~l~~s-p~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-------------------~~v~sl~~s 519 (609)
....+|...|.++.|+ +++ ..++++ +.|+.+++||+.++.....+..+ .......|+
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg-~~l~s~--s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDG-SGILAM--CKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp ----CCSSSCSEEEEETTTT-CEEEEE--CTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eecccccccceeeeeecCCC-CEEEEE--eCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 1234677889999987 566 456665 48999999999887655444321 112233444
Q ss_pred CCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 520 SDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 520 ~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
+....+++++|..|+.|+|||+.++..+..+.+|...|.+++|+|||++||+++.|| +.+|++..
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence 443333344477899999999999999888889999999999999999999998765 66676643
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-27 Score=254.68 Aligned_cols=241 Identities=21% Similarity=0.344 Sum_probs=207.1
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecC-CCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDG-HDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
..+.+++|++ ..+++++.||.|+|||+.+++....+.. |...|.+++| ++.+|++|+.||.|++||+.++ ..+.
T Consensus 94 ~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~ 170 (401)
T 4aez_A 94 YYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ-TKLR 170 (401)
T ss_dssp TTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEE
T ss_pred ceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC-eEEE
Confidence 4466677775 4577888999999999999988887776 8899999999 5789999999999999999987 4778
Q ss_pred EEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCe
Q psy4876 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH 492 (609)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~ 492 (609)
.+.+|...|.+++| ++.+|++|+.||.|++||++... ..+..+.+|...|.+++|+|++. ++++|+ .|+.
T Consensus 171 ~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~--~d~~ 240 (401)
T 4aez_A 171 TMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN-----HQIGTLQGHSSEVCGLAWRSDGL-QLASGG--NDNV 240 (401)
T ss_dssp EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS-----CEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTSC
T ss_pred EecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc-----ceeeEEcCCCCCeeEEEEcCCCC-EEEEEe--CCCe
Confidence 88899999999999 46799999999999999998542 56788889999999999999874 666664 8999
Q ss_pred EEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEE-ecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEE
Q psy4876 493 IYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAH-GFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVL 570 (609)
Q Consensus 493 I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~s-G~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~ 570 (609)
|++||+++++++..+..+ ..|.+++|+|++..+++++ |..|+.|++||+.+++.+..+. |...|.+++|+|++.+|+
T Consensus 241 v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~ 319 (401)
T 4aez_A 241 VQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIM 319 (401)
T ss_dssp EEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEE
T ss_pred EEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEE
Confidence 999999999999888654 5899999999887666654 4579999999999999998886 667899999999999999
Q ss_pred EEE--CCCCEEEEEcCCCccch
Q psy4876 571 SAG--ADETLRLWKIFEKVKSK 590 (609)
Q Consensus 571 s~s--~Dg~I~iWdl~~~~~~~ 590 (609)
+++ .||.|++|++..+....
T Consensus 320 ~~~g~~dg~i~v~~~~~~~~~~ 341 (401)
T 4aez_A 320 STHGFPDNNLSIWSYSSSGLTK 341 (401)
T ss_dssp EEECTTTCEEEEEEEETTEEEE
T ss_pred EEeecCCCcEEEEecCCcccee
Confidence 965 89999999998865443
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-28 Score=256.71 Aligned_cols=243 Identities=19% Similarity=0.327 Sum_probs=202.0
Q ss_pred CeEEEEEccCCC-EEEEEeCCCeEEEEeCCCCe----eEEEecCCCCceEEEEe---cCCEEEEEecCCeEEEEEcCCCC
Q psy4876 337 NVCSVAWIQEGY-MLGVGTSLGTVQLWDVSAKK----KCRTMDGHDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRD 408 (609)
Q Consensus 337 ~V~~v~~spdg~-~Lasgs~dg~I~iwd~~~~~----~~~~l~~h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~~~ 408 (609)
....++++|+.. ++++++.||.|+||++.... .+..+.+|...|.+++| ++.+|++|+.||.|++||+.+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 344688888874 44457889999999996542 34567889999999999 46899999999999999998863
Q ss_pred ------eeEEEEccCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCCCCCccceEee--cCCcccEEEEEEcCCCC
Q psy4876 409 ------HKVALLQNHTQEVCGLKWSPDG-RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL--SRHQAAVKAIAWCPWSP 479 (609)
Q Consensus 409 ------~~~~~~~~h~~~V~~l~~spdg-~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~ 479 (609)
..+..+.+|...|.+++|+|++ .+|++|+.|+.|++||+.++ +.+..+ ..|...|.+++|+|++.
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~ 189 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG------AAVLTLGPDVHPDTIYSVDWSRDGA 189 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT------EEEEEECTTTCCSCEEEEEECTTSS
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC------CccEEEecCCCCCceEEEEECCCCC
Confidence 3577888999999999999998 69999999999999999988 677888 78999999999999886
Q ss_pred cEEEEEeccCCCeEEEEECCCCceeEEE-cCCC--CeEEEEEcCCCCeEEEEEe-cCCCeEEEEECCCCce-EEEE-eCC
Q psy4876 480 NVLASGGGTADRHIYFWNVSSGACLDSI-DTKS--QVCALLWNSDYKELVSAHG-FAQNQLIIWKYPSLVK-VAEL-HGH 553 (609)
Q Consensus 480 ~llasggGs~Dg~I~iwd~~t~~~~~~~-~~~~--~v~sl~~s~~g~~l~~~sG-~~dg~I~Iwd~~~~~~-~~~l-~~h 553 (609)
. |++++ .|+.|++||+++++.+..+ ..+. .+..+.|++++.+++++.. ..++.|++||+.++.. +... ..|
T Consensus 190 ~-l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 266 (402)
T 2aq5_A 190 L-ICTSC--RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT 266 (402)
T ss_dssp C-EEEEE--TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC
T ss_pred E-EEEEe--cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccC
Confidence 4 45543 7999999999999999888 4443 4899999999998887310 5799999999988664 3333 357
Q ss_pred CCCEEEEEEeCCCCEEEEEE-CCCCEEEEEcCCCcc
Q psy4876 554 SARVLNLAMSPDETTVLSAG-ADETLRLWKIFEKVK 588 (609)
Q Consensus 554 ~~~V~~l~~spdg~~L~s~s-~Dg~I~iWdl~~~~~ 588 (609)
...|.+++|+|++.+|++++ .||.|++|++.++..
T Consensus 267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 78899999999999997555 799999999998763
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-29 Score=269.51 Aligned_cols=259 Identities=12% Similarity=0.061 Sum_probs=202.2
Q ss_pred eeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 270 YYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
-.|.+|+||||| +++++.|++|+ |... +. .+ + .|...|.+|+|+|+|
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~-------------------------~~--~l-~-gh~~~v~~V~FsPdg 64 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPKY-------------------------AK--DI-N-CNSKNLFHVKEFPLE 64 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EECC-------------------------CS--CC-S-SBGGGTEEEEEECCC
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--cccc-------------------------cc--ee-c-CCCccEEEEEECCCC
Confidence 357889999998 55577899999 7554 22 12 1 289999999999998
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEec-CCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCC-----
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMD-GHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ----- 419 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~----- 419 (609)
.++.+.+|+.+ ....+. .|...|.+++| +|..|++++.||.|++||... .+..+. |..
T Consensus 65 -------~~~~~~~~~~~---~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~ 130 (588)
T 2j04_A 65 -------FENKLDFELAQ---QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSR 130 (588)
T ss_dssp -------CCCTTTTSCCC---SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTT
T ss_pred -------CcceEEEEeCC---CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccc
Confidence 45555555543 222333 46889999999 689999999999999999543 555566 665
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCC-CccceEee----cCCcccEEEEEEcCCCCcEEEEEeccCCCeEE
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTF-STQPIHSL----SRHQAAVKAIAWCPWSPNVLASGGGTADRHIY 494 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~-~~~~~~~~----~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~ 494 (609)
.|.+++|||||++||+|+.||+|+|||+..+.... ..-.+..+ .+|...|.+++|+|+| +++++ .|+.|+
T Consensus 131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass---~D~tVr 205 (588)
T 2j04_A 131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL---SNNSVF 205 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE---TTCCEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe---CCCeEE
Confidence 59999999999999999999999999998762100 00024565 6788899999999998 44443 699999
Q ss_pred EEECCCCce---eEEEc-CC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEE--eCCCC
Q psy4876 495 FWNVSSGAC---LDSID-TK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAM--SPDET 567 (609)
Q Consensus 495 iwd~~t~~~---~~~~~-~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~--spdg~ 567 (609)
+||+..+.. ..++. .+ ..|.+++|+ +..+++++ ++.|++||+.++.......+|.+.|.+++| +||+.
T Consensus 206 lWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~---~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~ 280 (588)
T 2j04_A 206 SMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC---PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKEST 280 (588)
T ss_dssp EECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC---SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCE
T ss_pred EEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe---CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCC
Confidence 999998774 34563 33 589999999 67887753 699999999988774444489999999999 99999
Q ss_pred EEEEEECCCCEEEEEcC
Q psy4876 568 TVLSAGADETLRLWKIF 584 (609)
Q Consensus 568 ~L~s~s~Dg~I~iWdl~ 584 (609)
.|++++.||+ ++|.+.
T Consensus 281 ~La~a~edG~-klw~~d 296 (588)
T 2j04_A 281 ILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEEECSSCEE-EEEESS
T ss_pred EEEEEcCCCC-EEEeec
Confidence 9999999999 999974
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-28 Score=251.67 Aligned_cols=258 Identities=11% Similarity=0.052 Sum_probs=201.3
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQL 361 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~i 361 (609)
+++++.||.|++||+.+ +....... ...|.++.|+|+ +++|+.|+.|++
T Consensus 51 l~sg~~Dg~v~iwd~~~-------------------------~~~~~~~~---~~~v~~~~~~~~---~~s~s~D~~i~~ 99 (343)
T 3lrv_A 51 CMCRCEDGALHFTQLKD-------------------------SKTITTIT---TPNPRTGGEHPA---IISRGPCNRLLL 99 (343)
T ss_dssp EEEEEETTEEEEEEESS-------------------------SSCEEEEE---EECCCTTCCCCS---EEEECSTTEEEE
T ss_pred EEEECCCCcEEEEECCC-------------------------CcEEEEEe---cCCceeeeeCCc---eEEecCCCeEEE
Confidence 77799999999999988 44332222 356778888888 899999999999
Q ss_pred EeCC---------CCeeEEEec-CCCCceEEEEec----CCEEEEEecCCeEEEEEcCCCCeeEEEE-ccCCCCeEEEEE
Q psy4876 362 WDVS---------AKKKCRTMD-GHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSRDHKVALL-QNHTQEVCGLKW 426 (609)
Q Consensus 362 wd~~---------~~~~~~~l~-~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~ 426 (609)
|+.. +++.+..+. +|...|.+++|+ +.+|++++.||.|++||++++. ..... ..|...|.+++|
T Consensus 100 w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~~i~~~~~ 178 (343)
T 3lrv_A 100 LYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-QYIVHSAKSDVEYSSGVL 178 (343)
T ss_dssp EETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-EEEEECCCSSCCCCEEEE
T ss_pred EEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-EEEEEecCCCCceEEEEE
Confidence 9765 444444444 677899999994 5799999999999999999875 44444 345668999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCCCCCCccce-EeecC-CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee
Q psy4876 427 SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPI-HSLSR-HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504 (609)
Q Consensus 427 spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~-~~~~~-h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~ 504 (609)
+|+|.+|++|+.||.|++||++++ ..+ ..+.. |...|.+++|+|++. +|++++ |+.|++||+++++++
T Consensus 179 ~pdg~~lasg~~dg~i~iwd~~~~------~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~---~~~v~iwd~~~~~~~ 248 (343)
T 3lrv_A 179 HKDSLLLALYSPDGILDVYNLSSP------DQASSRFPVDEEAKIKEVKFADNGY-WMVVEC---DQTVVCFDLRKDVGT 248 (343)
T ss_dssp CTTSCEEEEECTTSCEEEEESSCT------TSCCEECCCCTTSCEEEEEECTTSS-EEEEEE---SSBEEEEETTSSTTC
T ss_pred CCCCCEEEEEcCCCEEEEEECCCC------CCCccEEeccCCCCEEEEEEeCCCC-EEEEEe---CCeEEEEEcCCCCcc
Confidence 999999999999999999999988 444 67777 999999999999985 566653 459999999998876
Q ss_pred EEEcC---C-CCe--EEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeC---CCCEEEEEECC
Q psy4876 505 DSIDT---K-SQV--CALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP---DETTVLSAGAD 575 (609)
Q Consensus 505 ~~~~~---~-~~v--~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp---dg~~L~s~s~D 575 (609)
..+.. + ..+ .+++|+|++++|+++++ .++.|+||++......... ..+..++|++ ++..|++++.|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~-~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d 323 (343)
T 3lrv_A 249 LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN-ESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGD 323 (343)
T ss_dssp BSSCCCBC-----CCEEEEECTTSSEEEEEET-TTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEET
T ss_pred eeecccccccccccceEEEECCCCCEEEEecC-CCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecC
Confidence 55442 1 223 46999999999998642 3899999999766554433 5678888998 88999999999
Q ss_pred CCEEEEEcCCC
Q psy4876 576 ETLRLWKIFEK 586 (609)
Q Consensus 576 g~I~iWdl~~~ 586 (609)
+.+.++-....
T Consensus 324 ~~~~~~~~~~~ 334 (343)
T 3lrv_A 324 GGIAAILKTND 334 (343)
T ss_dssp TEEEEEEECSS
T ss_pred CceEEEEecCC
Confidence 99998865443
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-27 Score=242.27 Aligned_cols=282 Identities=10% Similarity=0.010 Sum_probs=186.0
Q ss_pred eeEEEEEecCCC----eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccc-cccceeeeeeec-CCCCeEEEEE
Q psy4876 270 YYLNLIDWSHFN----VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQ-DNRAIDHLMDLE-GNENVCSVAW 343 (609)
Q Consensus 270 ~~v~~l~wsp~~----lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~-h~~~V~~v~~ 343 (609)
..|.++-|-..+ -+.++....|++|+..+..+-.-...++.....++....- +...+.++.--. +...|.+++|
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 40 VDVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred EEEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 347778887653 5667888999999998831111111122221111111100 001111111111 3345555666
Q ss_pred ccC----CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEe--cCCeEEEEEcCCCCeeEEEEccC
Q psy4876 344 IQE----GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGS--RCGNIVHHDVRSRDHKVALLQNH 417 (609)
Q Consensus 344 spd----g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs--~dg~I~iwd~~~~~~~~~~~~~h 417 (609)
+|+ +..+++++. .+.||++.+ ++++.+++ .|+.|++|++......+..+.+|
T Consensus 120 spd~~~~~~~l~s~g~--~~~v~~l~~--------------------g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 120 SSDDESEKQVLLKSGN--IKAVLGLTK--------------------RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp ------CCEEEEEEEE--EEEEEEETT--------------------TEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred CCCccccccEEEeCCC--eEEEEecCC--------------------CcEEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 666 555555443 255554432 33333432 58899999996645677788899
Q ss_pred CCCeEEEEEcc---CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCc---ccEEEEEEcCCCCcEEEE-------
Q psy4876 418 TQEVCGLKWSP---DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQ---AAVKAIAWCPWSPNVLAS------- 484 (609)
Q Consensus 418 ~~~V~~l~~sp---dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~llas------- 484 (609)
...+..++|++ ++.+||+|+.|++|+|||+.++ +.++++.+|. ..+.+++|+|++..+++.
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG------k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w 251 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG------QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKE 251 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC------CEEEEEECCC---CCCEEEEEEETTEEEEEEC------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC------cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcc
Confidence 99999999999 7899999999999999999998 7888887654 467788999998654320
Q ss_pred --EeccCCCeEEEEECCCCceeEEEc-----CC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCC
Q psy4876 485 --GGGTADRHIYFWNVSSGACLDSID-----TK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSAR 556 (609)
Q Consensus 485 --ggGs~Dg~I~iwd~~t~~~~~~~~-----~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~ 556 (609)
..|+.|++|++||..+++++..+. .+ ..+.+..+ ++..+++ |+.|++|+|||+.+++++.++.+|...
T Consensus 252 ~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lAS--gS~DgTIkIWDl~tGk~l~tL~gH~~~ 327 (356)
T 2w18_A 252 SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAA--ILTSGTIAIWDLLLGQCTALLPPVSDQ 327 (356)
T ss_dssp ------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEE--EETTSCEEEEETTTCSEEEEECCC--C
T ss_pred eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEE--EcCCCcEEEEECCCCcEEEEecCCCCC
Confidence 124689999999999999887652 22 12333333 3666666 558999999999999999999999876
Q ss_pred EE-EEEEeCCCCEEEEEECCCCEEEEEc
Q psy4876 557 VL-NLAMSPDETTVLSAGADETLRLWKI 583 (609)
Q Consensus 557 V~-~l~~spdg~~L~s~s~Dg~I~iWdl 583 (609)
+. .++|+|||++|++|+.|++|+|||+
T Consensus 328 vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 328 HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 65 5899999999999999999999996
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-27 Score=244.72 Aligned_cols=248 Identities=16% Similarity=0.231 Sum_probs=201.9
Q ss_pred eeeeeec-CCCCeEEEEEccC---CCEEEEEeCCCeEEEEeCCC-CeeE-EEecCCCCceEEEEe--cCCEEEEEecCCe
Q psy4876 327 DHLMDLE-GNENVCSVAWIQE---GYMLGVGTSLGTVQLWDVSA-KKKC-RTMDGHDVRVGALAW--NTYILSSGSRCGN 398 (609)
Q Consensus 327 ~~l~~~~-h~~~V~~v~~spd---g~~Lasgs~dg~I~iwd~~~-~~~~-~~l~~h~~~V~~l~~--~~~~L~sgs~dg~ 398 (609)
..+..+. |.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|.+++| ++.+|++++.||.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 3444555 9999999999999 69999999999999999987 5444 788899999999999 5789999999999
Q ss_pred EEEEEcCCCCeeEEEEccCCCCeEEEEE--ccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcC
Q psy4876 399 IVHHDVRSRDHKVALLQNHTQEVCGLKW--SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476 (609)
Q Consensus 399 I~iwd~~~~~~~~~~~~~h~~~V~~l~~--spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 476 (609)
|++||+.+.. ...+..|...|.+++| ++++.+|++++.||.|++||++++ +.+..+..+. .+.++.+.+
T Consensus 110 v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~-~~~~~~~~~ 180 (368)
T 3mmy_A 110 AKMWDLSSNQ--AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS------NPMMVLQLPE-RCYCADVIY 180 (368)
T ss_dssp EEEEETTTTE--EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS------SCSEEEECSS-CEEEEEEET
T ss_pred EEEEEcCCCC--ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC------cEEEEEecCC-CceEEEecC
Confidence 9999999863 3346679999999999 899999999999999999999987 6677776554 566777765
Q ss_pred CCCcEEEEEeccCCCeEEEEECCCCceeEEEc---CCCCeEEEEEcCCCCe----EEEEEecCCCeEEEEECCCC---ce
Q psy4876 477 WSPNVLASGGGTADRHIYFWNVSSGACLDSID---TKSQVCALLWNSDYKE----LVSAHGFAQNQLIIWKYPSL---VK 546 (609)
Q Consensus 477 ~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~---~~~~v~sl~~s~~g~~----l~~~sG~~dg~I~Iwd~~~~---~~ 546 (609)
. .++ ++ +.++.+++||+.......... ....+..+.+.++... +++ +..|+.|++|++... ..
T Consensus 181 ~--~~~-~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dg~i~i~~~~~~~~~~~ 253 (368)
T 3mmy_A 181 P--MAV-VA--TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL--GSIEGRVAIHYINPPNPAKD 253 (368)
T ss_dssp T--EEE-EE--EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE--EETTSEEEEEESSCSCHHHH
T ss_pred C--eeE-EE--eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE--ecCCCcEEEEecCCCCcccc
Confidence 3 344 43 269999999998765543332 2235666666665544 666 558999999999887 66
Q ss_pred EEEEeCCCC------------CEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 547 VAELHGHSA------------RVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 547 ~~~l~~h~~------------~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
+..+.+|.. .|.+++|+|++++|++++.||.|+|||+.++....
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~ 309 (368)
T 3mmy_A 254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK 309 (368)
T ss_dssp SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred ceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE
Confidence 778888876 79999999999999999999999999999876544
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=256.13 Aligned_cols=248 Identities=19% Similarity=0.354 Sum_probs=201.9
Q ss_pred eeEEEEEecCC-C--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 270 YYLNLIDWSHF-N--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 270 ~~v~~l~wsp~-~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
..|++++|+|+ + +++++.+|.|+||++........ ..+....+..+. |...|++++|+|
T Consensus 129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------------~~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------------PSGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------------TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------------ccccCCCcEEecCCCCCeEEEEeCC
Confidence 45889999997 3 44567799999999975211000 002234455555 889999999999
Q ss_pred CCC-EEEEEeCCCeEEEEeCCCCee-------EEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCC--eeEE
Q psy4876 346 EGY-MLGVGTSLGTVQLWDVSAKKK-------CRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRD--HKVA 412 (609)
Q Consensus 346 dg~-~Lasgs~dg~I~iwd~~~~~~-------~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~--~~~~ 412 (609)
++. +|++|+.||.|+|||+..+.. ...+.+|...|.+++|+ +.+|++++.||.|++||++... ..+.
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~ 271 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSH 271 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSE
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCccee
Confidence 997 999999999999999987322 46777899999999994 5799999999999999999763 4567
Q ss_pred EEccCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 413 LLQNHTQEVCGLKWSPDGR-YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~-~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
.+..|...|.+++|+|++. +|++|+.||.|++||++... .++..+..|...|.+++|+|++..++++++ .|+
T Consensus 272 ~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-----~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~--~d~ 344 (430)
T 2xyi_A 272 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVQWSPHNETILASSG--TDR 344 (430)
T ss_dssp EEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-----SCSEEEECCSSCEEEEEECSSCTTEEEEEE--TTS
T ss_pred EeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-----CCeEEeecCCCCEEEEEECCCCCCEEEEEe--CCC
Confidence 7789999999999999887 79999999999999999742 578888899999999999999988888885 799
Q ss_pred eEEEEECCC--------------CceeEEEcCC-CCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCC
Q psy4876 492 HIYFWNVSS--------------GACLDSIDTK-SQVCALLWNSDYK-ELVSAHGFAQNQLIIWKYPS 543 (609)
Q Consensus 492 ~I~iwd~~t--------------~~~~~~~~~~-~~v~sl~~s~~g~-~l~~~sG~~dg~I~Iwd~~~ 543 (609)
.|++||+.. ...+..+..+ ..|.+++|+|++. .+++ +..||.|+||++..
T Consensus 345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s--~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS--VSEDNIMQVWQMAE 410 (430)
T ss_dssp CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE--EETTSEEEEEEECH
T ss_pred cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEE--EECCCCEEEeEccc
Confidence 999999986 2455555554 4799999999999 5555 34899999999864
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-26 Score=247.84 Aligned_cols=255 Identities=21% Similarity=0.406 Sum_probs=201.8
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
..+|++|+|+|++ +++++.|+.|+|||+.+ +. .+..+. |...|.+++|+
T Consensus 147 ~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~-------------------------~~--~~~~~~~h~~~v~~~s~~- 198 (420)
T 4gga_A 147 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-------------------------QK--RLRNMTSHSARVGSLSWN- 198 (420)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEETTT-------------------------TE--EEEEECCCSSCEEEEEEE-
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEcCC-------------------------Cc--EEEEEeCCCCceEEEeeC-
Confidence 4579999999996 66788999999999987 44 344455 88999988874
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-eeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCC---eeEEEEccCCC
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAK-KKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRD---HKVALLQNHTQ 419 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~ 419 (609)
+.+|++|+.|+.+++||.... ..+..+.+|...+..+.| ++.++++++.||.|++|+...+. ..+.....|..
T Consensus 199 -~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~ 277 (420)
T 4gga_A 199 -SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 277 (420)
T ss_dssp -TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSS
T ss_pred -CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCC
Confidence 679999999999999998864 566788999999999999 57999999999999999998754 24567788999
Q ss_pred CeEEEEEccCC-CEEEEE--eCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEE
Q psy4876 420 EVCGLKWSPDG-RYLASG--GNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496 (609)
Q Consensus 420 ~V~~l~~spdg-~~lasg--s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iw 496 (609)
.|.+++|+|++ .+++++ +.|++|++||+.++ ..+..+..| ..+.++.|++++..+++++ |..|+.|+||
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~------~~~~~~~~~-~~v~~~~~~~~~~~lv~~s-g~~d~~I~iw 349 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG------ACLSAVDAH-SQVCSILWSPHYKELISGH-GFAQNQLVIW 349 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT------EEEEEEECS-SCEEEEEEETTTTEEEEEE-CTTTCCEEEE
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc------ccceeeccc-cceeeeeecCCCCeEEEEE-ecCCCEEEEE
Confidence 99999999955 455554 47999999999988 666666644 5789999999987666554 4689999999
Q ss_pred ECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEE
Q psy4876 497 NVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAM 562 (609)
Q Consensus 497 d~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~ 562 (609)
|+.+++++..+..| ..|.+++|+|+|.+|+++ +.|++|+|||+....+......+...+....|
T Consensus 350 d~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~--s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 350 KYPTMAKVAELKGHTSRVLSLTMSPDGATVASA--AADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE--ETTTEEEEECCSCSSCC---------------
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE--ecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 99999999999866 589999999999999985 48999999999877666555555444433333
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=249.22 Aligned_cols=201 Identities=11% Similarity=0.077 Sum_probs=165.2
Q ss_pred CCCCeEEEEEccCCCEEEEEe--CCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe
Q psy4876 334 GNENVCSVAWIQEGYMLGVGT--SLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDH 409 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~ 409 (609)
++..+.+++|+|||++||+++ .|+.|+|||+.+++.+..+. |...|.+++| ++.+|++++.+ .+.+|+..++..
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~ 209 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSC 209 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCE
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcc
Confidence 556799999999999987655 68999999999999998886 7788999999 57899998865 466666665543
Q ss_pred eE-EEEccCCCCeEEEEEccCCCEEEEEeCCC----cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 410 KV-ALLQNHTQEVCGLKWSPDGRYLASGGNDN----LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 410 ~~-~~~~~h~~~V~~l~~spdg~~lasgs~Dg----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
.. .....|...|.+++|+|++.++++++.|+ .+++||+..... .......+.+|...|.+++|+|+| .+|++
T Consensus 210 ~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~V~~~~~Spdg-~~las 286 (365)
T 4h5i_A 210 IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT--SVLRSKQVTNRFKGITSMDVDMKG-ELAVL 286 (365)
T ss_dssp EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE--EEEEEEEEESSCSCEEEEEECTTS-CEEEE
T ss_pred eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee--cceeeeeecCCCCCeEeEEECCCC-CceEE
Confidence 33 34557889999999999999999999887 688899876521 112345677899999999999998 47777
Q ss_pred EeccCCCeEEEEECCCCceeEEE-cC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q psy4876 485 GGGTADRHIYFWNVSSGACLDSI-DT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS 543 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t~~~~~~~-~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~ 543 (609)
|+ .|+.|+|||+.+++++..+ .. ...|++++|+|+|++|+++ +.|++|+|||++.
T Consensus 287 gs--~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~--S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 287 AS--NDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASV--SAANTIHIIKLPL 343 (365)
T ss_dssp EE--TTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEE--ETTSEEEEEECCT
T ss_pred Ec--CCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEE--eCCCeEEEEEcCC
Confidence 64 8999999999999999886 44 4589999999999999994 4899999999964
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=275.25 Aligned_cols=246 Identities=19% Similarity=0.316 Sum_probs=206.6
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
.-.|++++|+|++ +++++.||.|+|||+.. +....+..+. |.+.|++++|++
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~-------------------------~~~~~~~~l~~h~~~V~~l~~s~ 63 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEG-------------------------ETHKLIDTLTGHEGPVWRVDWAH 63 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEET-------------------------TEEEEEEEECCCSSCEEEEEECC
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCC-------------------------CCCccceeccCCcCceEEEEecC
Confidence 3458999999986 77788999999999976 4556666776 999999999998
Q ss_pred C--CCEEEEEeCCCeEEEEeCCCCe--eEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCCC-eeEEEEcc
Q psy4876 346 E--GYMLGVGTSLGTVQLWDVSAKK--KCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSRD-HKVALLQN 416 (609)
Q Consensus 346 d--g~~Lasgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~~-~~~~~~~~ 416 (609)
+ +++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+ +.+|++|+.||.|++||++... .....+.+
T Consensus 64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~ 143 (753)
T 3jro_A 64 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA 143 (753)
T ss_dssp TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec
Confidence 8 9999999999999999999887 778888999999999994 7899999999999999998763 24556778
Q ss_pred CCCCeEEEEEcc-------------CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC--CcE
Q psy4876 417 HTQEVCGLKWSP-------------DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS--PNV 481 (609)
Q Consensus 417 h~~~V~~l~~sp-------------dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~~l 481 (609)
|...|.+++|+| ++.+|++|+.||.|++||++.+... ......+.+|...|.+++|+|++ ..+
T Consensus 144 ~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~~~~ 221 (753)
T 3jro_A 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSY 221 (753)
T ss_dssp CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc--ceeeeeecCCCCcEEEEEeccCCCCCCE
Confidence 999999999999 5899999999999999999876321 24556778999999999999994 467
Q ss_pred EEEEeccCCCeEEEEECCCCcee-----EE-EcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc
Q psy4876 482 LASGGGTADRHIYFWNVSSGACL-----DS-IDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV 545 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t~~~~-----~~-~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~ 545 (609)
+++|+ .||.|++||+.++... .. ..+...|.+++|+|++.++++ |+.||.|+||++..+.
T Consensus 222 l~s~s--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s--~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 222 LASVS--QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEEE--SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEE--ECSSSCEECCBCCSSS
T ss_pred EEEEe--cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEE--EcCCCEEEEEecCCCC
Confidence 77764 8999999999986421 11 123458999999999999998 4589999999998543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-26 Score=244.67 Aligned_cols=257 Identities=7% Similarity=0.025 Sum_probs=213.0
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEE-----EecCCCCceEEEEe--cCCEEEEEecC
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCR-----TMDGHDVRVGALAW--NTYILSSGSRC 396 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~-----~l~~h~~~V~~l~~--~~~~L~sgs~d 396 (609)
+....+..+.....+.+++|+|++.++++++.++.|++||+.+++.+. .+.+|...|.+++| ++.++++++.|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d 190 (433)
T 3bws_A 111 ITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA 190 (433)
T ss_dssp CSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred CcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence 444555566545667799999977888888888999999999998887 34578999999999 57899999999
Q ss_pred CeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEc
Q psy4876 397 GNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASG-GNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWC 475 (609)
Q Consensus 397 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 475 (609)
+.|++||+.++ ..+..+..|...+.+++|+|++++++++ +.|+.|++||++++ +.+..+..+ ..+.+++|+
T Consensus 191 ~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~------~~~~~~~~~-~~~~~~~~~ 262 (433)
T 3bws_A 191 NAVHVFDLKTL-AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK------LEIRKTDKI-GLPRGLLLS 262 (433)
T ss_dssp TEEEEEETTTC-CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT------EEEEECCCC-SEEEEEEEC
T ss_pred CEEEEEECCCc-eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC------cEEEEecCC-CCceEEEEc
Confidence 99999999986 4677777899999999999999988554 47999999999987 566666544 458999999
Q ss_pred CCCCcEEEEEecc-----CCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEE
Q psy4876 476 PWSPNVLASGGGT-----ADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL 550 (609)
Q Consensus 476 p~~~~llasggGs-----~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l 550 (609)
|++..+++++.+. .|+.|++||+.+++.+..+.....+..++|+|+++.++++ +..++.|++||+.+++.+..+
T Consensus 263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~~~~v~v~d~~~~~~~~~~ 341 (433)
T 3bws_A 263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVS-DMCCSKIEVYDLKEKKVQKSI 341 (433)
T ss_dssp TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEE-ETTTTEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEE-ecCCCEEEEEECCCCcEEEEe
Confidence 9997666654221 4889999999999988888766789999999999887765 458999999999999888877
Q ss_pred eCCCCCEEEEEEeCCCCEEEEEEC---------------CCCEEEEEcCCCccch
Q psy4876 551 HGHSARVLNLAMSPDETTVLSAGA---------------DETLRLWKIFEKVKSK 590 (609)
Q Consensus 551 ~~h~~~V~~l~~spdg~~L~s~s~---------------Dg~I~iWdl~~~~~~~ 590 (609)
. +...+.+++|+|+|++|++++. ||.|++||+.+++...
T Consensus 342 ~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 342 P-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE 395 (433)
T ss_dssp E-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred c-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE
Confidence 6 6788999999999999998887 5799999998876544
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-27 Score=243.88 Aligned_cols=237 Identities=13% Similarity=0.096 Sum_probs=183.7
Q ss_pred eec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEE-EEEecCCeEEEEEcCC
Q psy4876 331 DLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYIL-SSGSRCGNIVHHDVRS 406 (609)
Q Consensus 331 ~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L-~sgs~dg~I~iwd~~~ 406 (609)
+.. |...|.+++|+|||++||+|+.+| ++|||+.+++.......+. +..+++ +++.+ ++++.|+.|++||+.+
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRH--LSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSC--CCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCC--eEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence 344 889999999999999999998876 7899999877766554443 445555 56665 6778889999999998
Q ss_pred CCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 407 RDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 407 ~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
+ ..+..+. |...|.+++|++++ ++++. |+.|++||+.++. +.+..+.. ....+++++ .+++.++
T Consensus 91 ~-~~~~~~~-~~~~v~~v~~~~~~--~~~~~-~~~i~i~d~~~~~-----~~~~~~~~---~~~~~~~s~---~~la~~s 154 (355)
T 3vu4_A 91 K-QDVSRIK-VDAPVKDLFLSREF--IVVSY-GDVISVFKFGNPW-----KRITDDIR---FGGVCEFSN---GLLVYSN 154 (355)
T ss_dssp T-EEEEEEE-CSSCEEEEEECSSE--EEEEE-TTEEEEEESSTTC-----CBSSCCEE---EEEEEEEET---TEEEEEE
T ss_pred C-cEEEEEE-CCCceEEEEEcCCE--EEEEE-cCEEEEEECCCCc-----eeeEEecc---CCceEEEEc---cEEEEeC
Confidence 7 4566665 67799999999864 44443 7899999998761 22233322 344566666 4555543
Q ss_pred ccCCCeEEEEECCCCc----------------eeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCe-EEEEECCCCceEE
Q psy4876 487 GTADRHIYFWNVSSGA----------------CLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQ-LIIWKYPSLVKVA 548 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t~~----------------~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~-I~Iwd~~~~~~~~ 548 (609)
|+.||.|++||+.++. ++..+..| ..|.+++|+|++++|+++ +.|++ |+|||+.+++.+.
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~--s~d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC--SQDGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE--ETTCSEEEEEETTTCCEEE
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE--eCCCCEEEEEECCCCcEEE
Confidence 4689999999999876 25666655 589999999999999995 48998 9999999999999
Q ss_pred EEe-C-CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 549 ELH-G-HSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 549 ~l~-~-h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
.+. + |...|.+++|+|||++|++++.|++|+|||+.....
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~ 274 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD 274 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSC
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCC
Confidence 998 6 999999999999999999999999999999987653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-27 Score=251.33 Aligned_cols=238 Identities=10% Similarity=0.042 Sum_probs=197.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe---eEEEecC-------------------------------------
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK---KCRTMDG------------------------------------- 375 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~---~~~~l~~------------------------------------- 375 (609)
.++.+++|+++|++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468899999999977655 56899999999988 6655543
Q ss_pred -----------------CCCceEEEEe--cCCEE-EEEecCCeEEEEEcC--CCCeeEEEEc--cCCCCeEEEEEccCCC
Q psy4876 376 -----------------HDVRVGALAW--NTYIL-SSGSRCGNIVHHDVR--SRDHKVALLQ--NHTQEVCGLKWSPDGR 431 (609)
Q Consensus 376 -----------------h~~~V~~l~~--~~~~L-~sgs~dg~I~iwd~~--~~~~~~~~~~--~h~~~V~~l~~spdg~ 431 (609)
|...|.+++| ++.+| ++|+.||.|++||+. ++ ..+..+. .|...|++++|+|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK-NVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS-SCEEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC-ceeeeeecccCCCCceEEEEcCCCC
Confidence 3337999999 46775 899999999999998 55 3555554 6778999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCC---CCcEEEEEeccCCCeEEEEECCCCceeEEEc
Q psy4876 432 YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW---SPNVLASGGGTADRHIYFWNVSSGACLDSID 508 (609)
Q Consensus 432 ~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---~~~llasggGs~Dg~I~iwd~~t~~~~~~~~ 508 (609)
+|++|+.||.|++|++..+.... .....+.+|...|.+++|+|+ + .+|++|+ .|+.|++||+.+++++..+.
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~--~d~~i~vwd~~~~~~~~~~~ 237 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEK--FTQEPILGHVSMLTDVHLIKDSDGH-QFIITSD--RDEHIKISHYPQCFIVDKWL 237 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSS--CCCCCSEECSSCEEEEEEEECTTSC-EEEEEEE--TTSCEEEEEESCTTCEEEEC
T ss_pred EEEEEeCCCcEEEEecCCccccc--ccceeeecccCceEEEEEcCCCCCC-cEEEEEc--CCCcEEEEECCCCceeeeee
Confidence 99999999999999998773210 134467789999999999998 5 5666664 89999999999999887743
Q ss_pred --CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC-------------------------CCCEEEEE
Q psy4876 509 --TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH-------------------------SARVLNLA 561 (609)
Q Consensus 509 --~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h-------------------------~~~V~~l~ 561 (609)
+...|.+++|+ ++++|+++ +.|+.|+|||+.+++.+..+..+ ...|.+++
T Consensus 238 ~~h~~~v~~~~~s-d~~~l~s~--~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 314 (450)
T 2vdu_B 238 FGHKHFVSSICCG-KDYLLLSA--GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII 314 (450)
T ss_dssp CCCSSCEEEEEEC-STTEEEEE--ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEE
T ss_pred cCCCCceEEEEEC-CCCEEEEE--eCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEE
Confidence 44689999999 99999985 48999999999999988888632 35699999
Q ss_pred EeCCCCEEEEEE-CCCCEEEEEc
Q psy4876 562 MSPDETTVLSAG-ADETLRLWKI 583 (609)
Q Consensus 562 ~spdg~~L~s~s-~Dg~I~iWdl 583 (609)
|+|++++|++++ .|+.|+||++
T Consensus 315 ~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 315 KSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ECSSSSEEEEEETTCSEEEEEEE
T ss_pred EeCCCCEEEEEECCCCeEEEEEe
Confidence 999999999999 8999999999
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-26 Score=242.82 Aligned_cols=280 Identities=20% Similarity=0.308 Sum_probs=191.0
Q ss_pred ceeEEEEEecC-CC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSH-FN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp-~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~sp 345 (609)
...|.+++|+| ++ +++++.|+.|++||+.+ +.... .+.+...+.++.|++
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------------------------~~~~~--~~~~~~~~~~~~~~~ 151 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT-------------------------LQTAD--VFNFEETVYSHHMSP 151 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEEEEEETTT-------------------------TEEEE--EEECSSCEEEEEECS
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC-------------------------Cccce--eccCCCceeeeEeec
Confidence 44689999999 44 67788899999999987 44333 334678899999998
Q ss_pred CC---CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CC-EEEEEecCCeEEEEEcCCCCeeEEEE-----
Q psy4876 346 EG---YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TY-ILSSGSRCGNIVHHDVRSRDHKVALL----- 414 (609)
Q Consensus 346 dg---~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~-~L~sgs~dg~I~iwd~~~~~~~~~~~----- 414 (609)
.+ .+|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +. +|++|+.||.|++||++.....+..+
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 231 (408)
T 4a11_B 152 VSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG 231 (408)
T ss_dssp SCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT
T ss_pred CCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc
Confidence 54 599999999999999999999999999999999999994 44 79999999999999998875455555
Q ss_pred ----------ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 415 ----------QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 415 ----------~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
..|...|.+++|+|++++|++++.||.|++||+.++........ .........+........+..++++
T Consensus 232 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
T 4a11_B 232 KKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG-KVCNNSKKGLKFTVSCGCSSEFVFV 310 (408)
T ss_dssp CSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC-CCCCCCSSCCCCEECCSSSSCEEEE
T ss_pred ccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccc-cccccccccceeEEecCCCceEEEE
Confidence 57889999999999999999999999999999998742111000 0001111122222222333344544
Q ss_pred EeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEe
Q psy4876 485 GGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMS 563 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~s 563 (609)
+ .|+.|++||+.+++++..+..+ ..|.+++|+|++++|+++ +.||.|++||+.+++.+.....+.. ...+.
T Consensus 311 ~---~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~--~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~ 382 (408)
T 4a11_B 311 P---YGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG--SRDCNILAWVPSLYEPVPDDDETTT---KSQLN 382 (408)
T ss_dssp E---ETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEE--ETTSCEEEEEECC--------------------
T ss_pred e---cCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEE--CCCCeEEEEeCCCCCccCCCCceEe---ccccc
Confidence 3 6899999999999999999855 589999999999999984 4899999999999887765543322 22333
Q ss_pred C-CCCEEEEEECCCCEEEEEcC
Q psy4876 564 P-DETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 564 p-dg~~L~s~s~Dg~I~iWdl~ 584 (609)
+ +...+.+++.|+.+++|+..
T Consensus 383 ~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 383 PAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ----------------------
T ss_pred cccceeecccCccCceeecCCc
Confidence 3 34455677789999999864
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=247.23 Aligned_cols=231 Identities=9% Similarity=0.058 Sum_probs=185.6
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcC---------CCCeeEE
Q psy4876 342 AWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVR---------SRDHKVA 412 (609)
Q Consensus 342 ~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~---------~~~~~~~ 412 (609)
.+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|++. +++++.|++|++|+.. +......
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~ 119 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLRE 119 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEE
Confidence 345678899999999999999999998888876 456777788777 9999999999999765 3321223
Q ss_pred EEccCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCcEEEEEeccC
Q psy4876 413 LLQNHTQEVCGLKWSP--DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPNVLASGGGTA 489 (609)
Q Consensus 413 ~~~~h~~~V~~l~~sp--dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~llasggGs~ 489 (609)
...+|...|.+++|+| ++++|++|+.||.|++||++++ +.+... ..|...|.+++|+|++ .++++| +.
T Consensus 120 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~------~~~~~~~~~~~~~i~~~~~~pdg-~~lasg--~~ 190 (343)
T 3lrv_A 120 IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD------SQYIVHSAKSDVEYSSGVLHKDS-LLLALY--SP 190 (343)
T ss_dssp EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS------CEEEEECCCSSCCCCEEEECTTS-CEEEEE--CT
T ss_pred eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC------cEEEEEecCCCCceEEEEECCCC-CEEEEE--cC
Confidence 3346778999999999 9999999999999999999987 444444 3455689999999988 577776 48
Q ss_pred CCeEEEEECCCCcee-EEEcC--CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC---CCCCEE--EEE
Q psy4876 490 DRHIYFWNVSSGACL-DSIDT--KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG---HSARVL--NLA 561 (609)
Q Consensus 490 Dg~I~iwd~~t~~~~-~~~~~--~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~---h~~~V~--~l~ 561 (609)
|+.|++||+++++.+ ..+.. ...|.+++|+|++.+|++++ ++.|+|||+++++.+..+.. |...+. +++
T Consensus 191 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (343)
T 3lrv_A 191 DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC---DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYD 267 (343)
T ss_dssp TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE---SSBEEEEETTSSTTCBSSCCCBC-----CCEEEE
T ss_pred CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe---CCeEEEEEcCCCCcceeecccccccccccceEEE
Confidence 999999999999987 77765 56999999999999999854 45999999998876554433 434444 699
Q ss_pred EeCCCCEEEEEEC-CCCEEEEEcCCCc
Q psy4876 562 MSPDETTVLSAGA-DETLRLWKIFEKV 587 (609)
Q Consensus 562 ~spdg~~L~s~s~-Dg~I~iWdl~~~~ 587 (609)
|+|+|++|++++. |+.|+||++....
T Consensus 268 ~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 268 IDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred ECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 9999999999999 9999999997654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=255.48 Aligned_cols=255 Identities=8% Similarity=0.043 Sum_probs=197.6
Q ss_pred ceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 269 DYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 269 ~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
.-.|.+++|+|++ .++.+.+|+. ....+..+.|...|.+++|+|+|.
T Consensus 52 ~~~v~~V~FsPdg-----~~~~~~~~~~----------------------------~~~~~~~~~~~~~V~~vawSPdG~ 98 (588)
T 2j04_A 52 SKNLFHVKEFPLE-----FENKLDFELA----------------------------QQNGLLNSQPVCYPRVCKPSPIDD 98 (588)
T ss_dssp GGGTEEEEEECCC-----CCCTTTTSCC----------------------------CSSCSSTTSCSCCEEEEEECSSSS
T ss_pred CccEEEEEECCCC-----CcceEEEEeC----------------------------CCceEeecCCCCcEEEEEECCCCC
Confidence 4468889999988 3444444443 223344445678999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCC-----ceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe------eEEEE-
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDV-----RVGALAW--NTYILSSGSRCGNIVHHDVRSRDH------KVALL- 414 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~-----~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~------~~~~~- 414 (609)
+||+++.||.|+|||.+. ++..+. |.. .|.+++| +|++|++|+.||+|++||+..+.. .+..+
T Consensus 99 ~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~ 175 (588)
T 2j04_A 99 WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIR 175 (588)
T ss_dssp CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEE
T ss_pred EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeee
Confidence 999999999999999654 777777 665 5999999 689999999999999999998631 35665
Q ss_pred ---ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCcEEEEEeccCC
Q psy4876 415 ---QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPNVLASGGGTAD 490 (609)
Q Consensus 415 ---~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~llasggGs~D 490 (609)
.+|...|.+++|+||| +++++.|+.|++||+..+.. ......+ .+|...|.+++|+ + ..+++++ +
T Consensus 176 ~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~---~~~~~tL~~~h~~~V~svaFs--g-~~LASa~---~ 244 (588)
T 2j04_A 176 LSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH---QPVSRMIQNASRRKITDLKIV--D-YKVVLTC---P 244 (588)
T ss_dssp CSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS---CCCEEEEECCCSSCCCCEEEE--T-TEEEEEC---S
T ss_pred cccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc---ccceeeecccccCcEEEEEEE--C-CEEEEEe---C
Confidence 6778899999999999 88889999999999987621 0123456 4788999999999 4 5777763 6
Q ss_pred CeEEEEECCCCce-eEEEcCCCCeEEEEE--cCCCCeEEEEEecCCCeEEEEECCCC-----------------------
Q psy4876 491 RHIYFWNVSSGAC-LDSIDTKSQVCALLW--NSDYKELVSAHGFAQNQLIIWKYPSL----------------------- 544 (609)
Q Consensus 491 g~I~iwd~~t~~~-~~~~~~~~~v~sl~~--s~~g~~l~~~sG~~dg~I~Iwd~~~~----------------------- 544 (609)
+.|++||+.+++. ...+.+...+..++| ++++..+++ ++.+|+ ++|.....
T Consensus 245 ~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~--a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g 321 (588)
T 2j04_A 245 GYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLM--SNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIW 321 (588)
T ss_dssp SEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEE--CSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTT
T ss_pred CeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEE--EcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCC
Confidence 9999999998887 444455678999999 999988888 568999 99986421
Q ss_pred ceEEEEeCCCCCEEEEEEeCCCCEEEEEEC
Q psy4876 545 VKVAELHGHSARVLNLAMSPDETTVLSAGA 574 (609)
Q Consensus 545 ~~~~~l~~h~~~V~~l~~spdg~~L~s~s~ 574 (609)
..+..+. +...|.+++|+|||+.+|+++.
T Consensus 322 ~~l~~~~-~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 322 NEFNNYE-TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp TSSSSSC-CEEEEEEEEECTTSSEEEEEEE
T ss_pred Cceeeec-cceEEEEEEECCCCCEEEEEEe
Confidence 1111111 2345899999999999999875
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-25 Score=232.97 Aligned_cols=279 Identities=12% Similarity=0.061 Sum_probs=218.4
Q ss_pred EEEEEecCCC--eEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHFN--VLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~~--lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
+.+++|+|++ +++ ++.|+.|++||+.+ ++... .+.+...+.+++|+|+++
T Consensus 34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~-------------------------~~~~~--~~~~~~~v~~~~~spdg~ 86 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAHSNDVSIIDTAT-------------------------NNVIA--TVPAGSSPQGVAVSPDGK 86 (391)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEETTT-------------------------TEEEE--EEECSSSEEEEEECTTSS
T ss_pred cceEEECCCCCEEEEECCCCCeEEEEECCC-------------------------CeEEE--EEECCCCccceEECCCCC
Confidence 6889999997 333 44799999999987 55433 344445999999999999
Q ss_pred EEEEEe-CCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEE-EEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEE
Q psy4876 349 MLGVGT-SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYIL-SSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGL 424 (609)
Q Consensus 349 ~Lasgs-~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 424 (609)
+|++++ .++.|++||+.+++.+..+..| ..+.+++|+ +..| ++++.++.|++||+.++ ..+..+..| ..+.++
T Consensus 87 ~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~-~~~~~~ 163 (391)
T 1l0q_A 87 QVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-AVINTVSVG-RSPKGI 163 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECC-SSEEEE
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEEecC-CCcceE
Confidence 886554 6699999999999988888754 568999994 5655 78888999999999986 456666655 567999
Q ss_pred EEccCCCEE-EEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce
Q psy4876 425 KWSPDGRYL-ASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC 503 (609)
Q Consensus 425 ~~spdg~~l-asgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~ 503 (609)
+|+|++++| ++++.|+.|++||++++ +.+..+. +...+.+++|+|++..+++++.+..++.|++||+.+++.
T Consensus 164 ~~~~dg~~l~~~~~~~~~v~~~d~~~~------~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 164 AVTPDGTKVYVANFDSMSISVIDTVTN------SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTT------EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCC------eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE
Confidence 999999987 57778899999999987 5555554 556789999999997777665322589999999999999
Q ss_pred eEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEE---EEE------------EeCCC--
Q psy4876 504 LDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVL---NLA------------MSPDE-- 566 (609)
Q Consensus 504 ~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~---~l~------------~spdg-- 566 (609)
+..+..+..+.+++|+|++++++++ +..++.|++||+.+++.+..+..|..+.. .+. |+.+.
T Consensus 237 ~~~~~~~~~~~~~~~s~dg~~l~~s-~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~ 315 (391)
T 1l0q_A 237 TARIPVGPDPAGIAVTPDGKKVYVA-LSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITS 315 (391)
T ss_dssp EEEEECCSSEEEEEECTTSSEEEEE-ETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCS
T ss_pred EEEEecCCCccEEEEccCCCEEEEE-cCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccccccccccc
Confidence 9999888889999999999988665 45799999999999999988877654421 122 22221
Q ss_pred --------CEEEEEECCCCEEEEEcCCCcc
Q psy4876 567 --------TTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 567 --------~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
..+...+.|..+++|++.++..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 316 GYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp SEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred ccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 2455667789999999977654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-24 Score=218.06 Aligned_cols=241 Identities=21% Similarity=0.390 Sum_probs=200.3
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEec--CCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 337 NVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMD--GHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
++.+|+||+++ +||+|. |++|+|||+.+++.+..+. +|...|.+++| ++++|++|+.||+|++||+.++ ..+.
T Consensus 27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~-~~~~ 103 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-KRLR 103 (318)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEE
T ss_pred cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc-eeEE
Confidence 56789999886 787765 8999999999999888765 67788999999 5799999999999999999987 5788
Q ss_pred EEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCe
Q psy4876 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH 492 (609)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~ 492 (609)
.+.+|...+.++.+ ++.++++|+.++.+++|+..... ..+..+.+|...+..+.|++++. ++++++ .|+.
T Consensus 104 ~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~--~d~~ 173 (318)
T 4ggc_A 104 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE-----HHVATLSGHSQEVCGLRWAPDGR-HLASGG--NDNL 173 (318)
T ss_dssp EEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS-----CEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTSC
T ss_pred EecCccceEEEeec--CCCEEEEEecCCceEeeecCCCc-----eeEEEEcCccCceEEEEEcCCCC-EEEEEe--cCcc
Confidence 89999998876555 56799999999999999988763 56678889999999999999885 555653 8999
Q ss_pred EEEEECCCCcee----EE-EcCCCCeEEEEEcCCCCeEE-EEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCC
Q psy4876 493 IYFWNVSSGACL----DS-IDTKSQVCALLWNSDYKELV-SAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDE 566 (609)
Q Consensus 493 I~iwd~~t~~~~----~~-~~~~~~v~sl~~s~~g~~l~-~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg 566 (609)
|++||+.+++.. .. ......|..+.+++++..++ +++|..++.|++||.......... .|...+..+.|+|++
T Consensus 174 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~ 252 (318)
T 4ggc_A 174 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHY 252 (318)
T ss_dssp EEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTT
T ss_pred eeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccc
Confidence 999999987632 22 23456899999999876554 556778999999999988877665 467789999999999
Q ss_pred CEEEEEE--CCCCEEEEEcCCCccchh
Q psy4876 567 TTVLSAG--ADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 567 ~~L~s~s--~Dg~I~iWdl~~~~~~~k 591 (609)
..+++++ .|+.|+|||+.++.....
T Consensus 253 ~~~~~~sg~~d~~i~iwd~~~~~~~~~ 279 (318)
T 4ggc_A 253 KELISGHGFAQNQLVIWKYPTMAKVAE 279 (318)
T ss_dssp TEEEEEECTTTCCEEEEETTTCCEEEE
T ss_pred cceEEEEEcCCCEEEEEECCCCcEEEE
Confidence 9888765 799999999998776543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.2e-26 Score=239.59 Aligned_cols=225 Identities=12% Similarity=0.104 Sum_probs=165.7
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCcccccccccccccccee---eeeeec-CCCCeEEEEEcc--------CCCE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAID---HLMDLE-GNENVCSVAWIQ--------EGYM 349 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~-h~~~V~~v~~sp--------dg~~ 349 (609)
+++++.|++|+|||+.. +... .+..+. |.+.|.+|+|+| ||++
T Consensus 104 las~~~d~~v~lw~~~~-------------------------~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~ 158 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKN-------------------------ETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQV 158 (393)
T ss_dssp EEEEETTSCEEEEEEET-------------------------TEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEE
T ss_pred EEEEeCCCcEEEEECCC-------------------------CccceeeeecccCCCCCceEEEEEccccccccCCCCCE
Confidence 55688899999999987 4332 233455 999999999998 7899
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecC---CEEEEEecCCeEEEEEcCCCCeeE---------------
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT---YILSSGSRCGNIVHHDVRSRDHKV--------------- 411 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~---~~L~sgs~dg~I~iwd~~~~~~~~--------------- 411 (609)
||+|+.|++|+|||+.++..+..+..|...|.+++|++ .+|++|+.||+|++||++++....
T Consensus 159 las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s 238 (393)
T 4gq1_A 159 IASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT 238 (393)
T ss_dssp EEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEE
T ss_pred EEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEe
Confidence 99999999999999999888888888999999999953 589999999999999998764211
Q ss_pred ---------EEEccCCCCeEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEE----------
Q psy4876 412 ---------ALLQNHTQEVCGLKWS-PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKA---------- 471 (609)
Q Consensus 412 ---------~~~~~h~~~V~~l~~s-pdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~---------- 471 (609)
....+|...|.++.|+ +||+.|++++.|+.+++||+..+. ....+..|...+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~ 312 (393)
T 4gq1_A 239 LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN------DYNEISDSTMKLGPKNLLPNVQGI 312 (393)
T ss_dssp EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------------CCSCSEEEE
T ss_pred cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC------CCceEeeecCccccEEEccccccc
Confidence 1124677889999987 799999999999999999998762 23333333333322
Q ss_pred --------EEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 472 --------IAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 472 --------l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
..|+|....+++++| +.|+.|++||+.+++++..+. ++..|.+++|+|+|++|++++ ++.+.+|.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~sg-s~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as---~~Gv~lvrL 387 (393)
T 4gq1_A 313 SLFPSLLGACPHPRYMDYFATAH-SQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIAT---EGSVLLTRL 387 (393)
T ss_dssp CSSCCSSCCEECSSCTTEEEEEE-TTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEE---SSEEEEEEE
T ss_pred cccCcceeEEEccCCCCEEEEEE-CCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEe---CCCeEEEEE
Confidence 334443334444442 589999999999998776654 556999999999999999864 556777664
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-25 Score=234.69 Aligned_cols=277 Identities=15% Similarity=0.101 Sum_probs=211.5
Q ss_pred EEEEEecCCC--eE-EEE----cCC----eEEEEeC--CCCCCCceEEecCCccccccccccccccceeeeeeec-CCCC
Q psy4876 272 LNLIDWSHFN--VL-AVA----LGG----SIYLWNG--ESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNEN 337 (609)
Q Consensus 272 v~~l~wsp~~--ll-a~s----~dg----~I~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~ 337 (609)
++..+|++.+ ++ +++ .+| .|+|||+ .+ ++...-..+. |...
T Consensus 65 ~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~-------------------------~~~~~~~~~~~~~~~ 119 (415)
T 2hqs_A 65 VQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAP-------------------------GTVLAQNSYKVNKQW 119 (415)
T ss_dssp CCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSST-------------------------TCEEEEEEEEECGGG
T ss_pred cCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCC-------------------------CCEEeeeEEEcChhH
Confidence 5568898876 34 554 357 8999999 77 4432223344 6666
Q ss_pred eEEEEEcc--------------CCCEEEEEeCC------CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEec
Q psy4876 338 VCSVAWIQ--------------EGYMLGVGTSL------GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSR 395 (609)
Q Consensus 338 V~~v~~sp--------------dg~~Lasgs~d------g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~ 395 (609)
+..+++++ .+..|+.++.+ +.|++||+. +...+.+.+|...|.+++| ++..|++++.
T Consensus 120 ~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~ 198 (415)
T 2hqs_A 120 LRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTF 198 (415)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEe
Confidence 77776664 15566666554 799999997 4567778889999999999 5789999988
Q ss_pred CC---eEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEE-EEeCCCc--EEEEeCCCCCCCCCccceEeecCCcccE
Q psy4876 396 CG---NIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLA-SGGNDNL--LNIWSGVPGQHTFSTQPIHSLSRHQAAV 469 (609)
Q Consensus 396 dg---~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-sgs~Dg~--I~iwd~~~~~~~~~~~~~~~~~~h~~~V 469 (609)
++ .|++||+.++. ...+..|...+.+++|+|||++|+ +++.|+. |++||+.++ + ...+..|...+
T Consensus 199 ~~~~~~i~~~d~~tg~--~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~------~-~~~l~~~~~~~ 269 (415)
T 2hqs_A 199 ESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG------Q-IRQVTDGRSNN 269 (415)
T ss_dssp TTSSCEEEEEETTTCC--EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC------C-EEECCCCSSCE
T ss_pred cCCCcEEEEEECCCCc--EEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC------C-EEeCcCCCCcc
Confidence 75 99999999874 345677888999999999999888 6666554 999999876 3 35677788899
Q ss_pred EEEEEcCCCCcEEEEEeccCCC--eEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEec-CCCeEEEEECCCCce
Q psy4876 470 KAIAWCPWSPNVLASGGGTADR--HIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGF-AQNQLIIWKYPSLVK 546 (609)
Q Consensus 470 ~~l~~sp~~~~llasggGs~Dg--~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~-~dg~I~Iwd~~~~~~ 546 (609)
.+++|+|+|..+++++. .++ .|++||+.+++..........+.+++|+|+|++|++++.. .+..|++||+.+++.
T Consensus 270 ~~~~~spdg~~l~~~s~--~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~ 347 (415)
T 2hqs_A 270 TEPTWFPDSQNLAFTSD--QAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 347 (415)
T ss_dssp EEEEECTTSSEEEEEEC--TTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred cceEECCCCCEEEEEEC--CCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence 99999999976666652 344 7888899988754433344578899999999999987532 136899999998876
Q ss_pred EEEEeCCCCCEEEEEEeCCCCEEEEEECCC---CEEEEEcCCCc
Q psy4876 547 VAELHGHSARVLNLAMSPDETTVLSAGADE---TLRLWKIFEKV 587 (609)
Q Consensus 547 ~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg---~I~iWdl~~~~ 587 (609)
. .+..|. .+.+++|+|||++|++++.|+ .|++||+.+..
T Consensus 348 ~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 348 Q-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp E-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred E-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 4 455554 899999999999999998887 79999987554
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-23 Score=230.22 Aligned_cols=287 Identities=10% Similarity=0.060 Sum_probs=223.8
Q ss_pred EEEEEecCCC--eEEEEcCCeEEEEeC--CCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEcc--
Q psy4876 272 LNLIDWSHFN--VLAVALGGSIYLWNG--ESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQ-- 345 (609)
Q Consensus 272 v~~l~wsp~~--lla~s~dg~I~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~sp-- 345 (609)
+..++|+|++ +++++.|+.|++||+ .+ +. .+.++.+...+..++|+|
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t-------------------------~~--~~~~i~~g~~p~~va~sp~~ 233 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKE-------------------------PT--KVAEIKIGIEARSVESSKFK 233 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSS-------------------------CE--EEEEEECCSEEEEEEECCST
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCC-------------------------Cc--EEEEEecCCCcceEEeCCCc
Confidence 6789999997 677888999999999 55 33 344555567789999999
Q ss_pred --CCCEEEEEeC-CCeEEEEeCCCCeeEEEecCC-----------CCceEEEEec---CCEEEEEecCCeEEEEEcCCCC
Q psy4876 346 --EGYMLGVGTS-LGTVQLWDVSAKKKCRTMDGH-----------DVRVGALAWN---TYILSSGSRCGNIVHHDVRSRD 408 (609)
Q Consensus 346 --dg~~Lasgs~-dg~I~iwd~~~~~~~~~l~~h-----------~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~ 408 (609)
+|++|++++. ++.|.|||..+++.+..+..+ ...+..+.++ +.++++...++.|.+||+.+..
T Consensus 234 ~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 234 GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID 313 (543)
T ss_dssp TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred CCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence 9999999884 899999999999998887652 2378888884 4577788889999999998754
Q ss_pred eeEEEEccCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCCCccceEeecC----CcccEEEEEEcCCCCcEEE
Q psy4876 409 HKVALLQNHTQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVPGQHTFSTQPIHSLSR----HQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 409 ~~~~~~~~h~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~----h~~~V~~l~~sp~~~~lla 483 (609)
........+...+.++.|+|+|++|++++ .+++|.+||+.++ +.+..+.. |.+....+ ++|++..+++
T Consensus 314 ~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg------~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~ 386 (543)
T 1nir_A 314 NLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR------RLSALVDVGKTPHPGRGANF-VHPKYGPVWS 386 (543)
T ss_dssp SCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT------EEEEEEECSSSBCCTTCEEE-EETTTEEEEE
T ss_pred cceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC------eEEEeeccCCCCCCCCCccc-CCCCCccEEE
Confidence 32222224667788999999999877655 5899999999988 56665553 54433333 5787667888
Q ss_pred EEeccCCCeEEEEECCC-------CceeEEEcCCC-CeEEEEEcCCCCeEEEEE--ec---CCCeEEEEECCCCceE-EE
Q psy4876 484 SGGGTADRHIYFWNVSS-------GACLDSIDTKS-QVCALLWNSDYKELVSAH--GF---AQNQLIIWKYPSLVKV-AE 549 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t-------~~~~~~~~~~~-~v~sl~~s~~g~~l~~~s--G~---~dg~I~Iwd~~~~~~~-~~ 549 (609)
++. ..|++|.+||+.+ ++++.++..++ .+..+.++|++++|++.+ +. .+++|.|||+.+++.. ..
T Consensus 387 s~~-~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~ 465 (543)
T 1nir_A 387 TSH-LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV 465 (543)
T ss_dssp EEB-SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred ecc-CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEE
Confidence 763 2589999999998 89999998764 678999999999999843 11 1679999999998877 44
Q ss_pred E--------eCCCCCEEEEEEeCCCCEEEEEE-----CCCCEEEEEcCCCccchhhh
Q psy4876 550 L--------HGHSARVLNLAMSPDETTVLSAG-----ADETLRLWKIFEKVKSKKKE 593 (609)
Q Consensus 550 l--------~~h~~~V~~l~~spdg~~L~s~s-----~Dg~I~iWdl~~~~~~~k~~ 593 (609)
+ ..+..++.++.|+|||+.|+++. .|+.|.|||..+.+..+..+
T Consensus 466 ~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 466 LPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp ECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred eechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 3 35678899999999999888663 37999999999988765443
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-22 Score=208.77 Aligned_cols=274 Identities=11% Similarity=0.094 Sum_probs=204.7
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeC-CCeEE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTS-LGTVQ 360 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~-dg~I~ 360 (609)
+++.+.++.|++||..+ ++....... +...+ +++|+|+|++|++++. ++.|.
T Consensus 13 ~v~~~~~~~v~~~d~~~-------------------------~~~~~~~~~-~~~~~-~~~~s~dg~~l~~~~~~~~~i~ 65 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDT-------------------------LEILNQITL-GYDFV-DTAITSDCSNVVVTSDFCQTLV 65 (331)
T ss_dssp EEEEGGGTEEEEEETTT-------------------------CCEEEEEEC-CCCEE-EEEECSSSCEEEEEESTTCEEE
T ss_pred EEEecCCCeEEEEeCcc-------------------------cceeeeEEc-cCCcc-eEEEcCCCCEEEEEeCCCCeEE
Confidence 44566789999999988 665544443 44556 9999999997776665 88999
Q ss_pred EEeCCCCee-EEEecCCCCceEEEEe--cCCEEEEEecCC---eEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEE
Q psy4876 361 LWDVSAKKK-CRTMDGHDVRVGALAW--NTYILSSGSRCG---NIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLA 434 (609)
Q Consensus 361 iwd~~~~~~-~~~l~~h~~~V~~l~~--~~~~L~sgs~dg---~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (609)
+||+.+++. ...+..+.....+++| ++.+|+++..++ .|.+||+.++ ..+..+.. ...+.+++|+|+|++|+
T Consensus 66 ~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~-~~~~~~~~-~~~~~~~~~spdg~~l~ 143 (331)
T 3u4y_A 66 QIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN-KFISTIPI-PYDAVGIAISPNGNGLI 143 (331)
T ss_dssp EEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT-EEEEEEEC-CTTEEEEEECTTSSCEE
T ss_pred EEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC-CeEEEEEC-CCCccceEECCCCCEEE
Confidence 999999887 7777777666665888 577888555553 8999999886 45555553 45578999999998555
Q ss_pred E-EeCCCc-EEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce---eEEEcC
Q psy4876 435 S-GGNDNL-LNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC---LDSIDT 509 (609)
Q Consensus 435 s-gs~Dg~-I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~---~~~~~~ 509 (609)
+ +..++. |.+|++.......... ...+ .....+..++|+|++..+++++ ..++.|++||+.+++. +..+..
T Consensus 144 ~~~~~~~~~i~~~~~~~~g~~~~~~-~~~~-~~~~~~~~~~~spdg~~l~v~~--~~~~~v~v~d~~~~~~~~~~~~~~~ 219 (331)
T 3u4y_A 144 LIDRSSANTVRRFKIDADGVLFDTG-QEFI-SGGTRPFNITFTPDGNFAFVAN--LIGNSIGILETQNPENITLLNAVGT 219 (331)
T ss_dssp EEEETTTTEEEEEEECTTCCEEEEE-EEEE-CSSSSEEEEEECTTSSEEEEEE--TTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred EEecCCCceEEEEEECCCCcEeecC-Cccc-cCCCCccceEECCCCCEEEEEe--CCCCeEEEEECCCCcccceeeeccC
Confidence 4 455688 9999998642111001 1222 3445679999999998777776 3689999999999998 888888
Q ss_pred CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce--EEEEeCC----CCC---EEEEEEeCCCCEEEEEEC-CCCEE
Q psy4876 510 KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK--VAELHGH----SAR---VLNLAMSPDETTVLSAGA-DETLR 579 (609)
Q Consensus 510 ~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~--~~~l~~h----~~~---V~~l~~spdg~~L~s~s~-Dg~I~ 579 (609)
...+..++|+|+|++++++. ..++.|.+||..+++. +..+..+ ... +..++|+|||++|++++. ++.|.
T Consensus 220 ~~~~~~~~~spdg~~l~v~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~ 298 (331)
T 3u4y_A 220 NNLPGTIVVSRDGSTVYVLT-ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELK 298 (331)
T ss_dssp SSCCCCEEECTTSSEEEEEC-SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEE
T ss_pred CCCCceEEECCCCCEEEEEE-cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEE
Confidence 88889999999999887764 3578899999998876 4444333 222 355899999998876665 56999
Q ss_pred EEEcCCCccc
Q psy4876 580 LWKIFEKVKS 589 (609)
Q Consensus 580 iWdl~~~~~~ 589 (609)
+||+......
T Consensus 299 v~d~~~~~~~ 308 (331)
T 3u4y_A 299 VFTISGKVVG 308 (331)
T ss_dssp EEETTSCEEE
T ss_pred EEEecCCccc
Confidence 9999876543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-22 Score=224.67 Aligned_cols=276 Identities=12% Similarity=0.131 Sum_probs=213.9
Q ss_pred ecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEe
Q psy4876 277 WSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGT 354 (609)
Q Consensus 277 wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs 354 (609)
++|++ +++.+.|++|.+||..+ +++...... + ..+.+++|+|+|++|++++
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t-------------------------~~~~~~i~~-g-~~~~~v~~spdg~~l~v~~ 197 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDS-------------------------KKIVKVIDT-G-YAVHISRMSASGRYLLVIG 197 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTT-------------------------CCEEEEEEC-S-TTEEEEEECTTSCEEEEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCC-------------------------ceEEEEEec-C-cccceEEECCCCCEEEEEC
Confidence 56766 44456689999999988 554433332 2 2388999999999999999
Q ss_pred CCCeEEEEeC--CCCeeEEEecCCCCceEEEEec------CCEEEEEe-cCCeEEEEEcCCCCeeEEEEcc---------
Q psy4876 355 SLGTVQLWDV--SAKKKCRTMDGHDVRVGALAWN------TYILSSGS-RCGNIVHHDVRSRDHKVALLQN--------- 416 (609)
Q Consensus 355 ~dg~I~iwd~--~~~~~~~~l~~h~~~V~~l~~~------~~~L~sgs-~dg~I~iwd~~~~~~~~~~~~~--------- 416 (609)
.|+.|.+||+ .+++.+..+. +...+..++|+ +++|++++ .+++|.+||..+.. .+..+..
T Consensus 198 ~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~-~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 198 RDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDTQT 275 (543)
T ss_dssp TTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSSCC
T ss_pred CCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc-cceeecccCcccCccc
Confidence 9999999999 8888888887 45567888885 57888877 48999999998874 5565553
Q ss_pred -C-CCCeEEEEEccCCCE-EEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeE
Q psy4876 417 -H-TQEVCGLKWSPDGRY-LASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHI 493 (609)
Q Consensus 417 -h-~~~V~~l~~spdg~~-lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I 493 (609)
| ...+.++.++|++.. +++...++.|.+||+.+.+. ..+..+ .+...+.+++|+|+++++++++. .+++|
T Consensus 276 ~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~----l~~~~i-~~~~~~~~~~~spdg~~l~va~~--~~~~v 348 (543)
T 1nir_A 276 YHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN----LTVTSI-GAAPFLHDGGWDSSHRYFMTAAN--NSNKV 348 (543)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS----CEEEEE-ECCSSCCCEEECTTSCEEEEEEG--GGTEE
T ss_pred cccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc----ceeEEe-ccCcCccCceECCCCCEEEEEec--CCCeE
Confidence 2 237899999997665 56667789999999987631 111233 35566788999999987877763 68999
Q ss_pred EEEECCCCceeEEEcCC-----CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-------CceEEEEeCCCCCEEEEE
Q psy4876 494 YFWNVSSGACLDSIDTK-----SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS-------LVKVAELHGHSARVLNLA 561 (609)
Q Consensus 494 ~iwd~~t~~~~~~~~~~-----~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~-------~~~~~~l~~h~~~V~~l~ 561 (609)
.+||+.+++++..+... .....+ ++|++..++++....+++|.|||+.+ ++.+..+.+|...+..++
T Consensus 349 ~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~ 427 (543)
T 1nir_A 349 AVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK 427 (543)
T ss_dssp EEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE
T ss_pred EEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEE
Confidence 99999999999888742 122333 57875555544333689999999988 899999999999999999
Q ss_pred EeCCCCEEEEEE-------CCCCEEEEEcCCCccc
Q psy4876 562 MSPDETTVLSAG-------ADETLRLWKIFEKVKS 589 (609)
Q Consensus 562 ~spdg~~L~s~s-------~Dg~I~iWdl~~~~~~ 589 (609)
|+|||++|++++ .+++|.|||+.+.+..
T Consensus 428 ~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 428 THPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp CCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred cCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 999999999987 3789999999988755
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-23 Score=207.91 Aligned_cols=256 Identities=13% Similarity=0.135 Sum_probs=194.0
Q ss_pred EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEEEeC
Q psy4876 285 VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDV 364 (609)
Q Consensus 285 ~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~ 364 (609)
.+.++.|++||+.+ +....+.. |...|.+++|+|+|++|++++ ++.|.+||+
T Consensus 18 ~~~~~~i~~~d~~~-------------------------~~~~~~~~--~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~ 69 (297)
T 2ojh_A 18 GSMRSSIEIFNIRT-------------------------RKMRVVWQ--TPELFEAPNWSPDGKYLLLNS-EGLLYRLSL 69 (297)
T ss_dssp CCCCEEEEEEETTT-------------------------TEEEEEEE--ESSCCEEEEECTTSSEEEEEE-TTEEEEEES
T ss_pred CCcceeEEEEeCCC-------------------------Cceeeecc--CCcceEeeEECCCCCEEEEEc-CCeEEEEeC
Confidence 34678999999988 55544333 678999999999999999887 689999999
Q ss_pred CC-CeeEEEecCC-CCceEEEEe--cCCEEEEEe--cCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEE-EEe
Q psy4876 365 SA-KKKCRTMDGH-DVRVGALAW--NTYILSSGS--RCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLA-SGG 437 (609)
Q Consensus 365 ~~-~~~~~~l~~h-~~~V~~l~~--~~~~L~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-sgs 437 (609)
.+ ++.......+ ...+.+++| ++..|++++ .++.+.+|.++........+..+. .+..++|+|+|++|+ +++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~ 148 (297)
T 2ojh_A 70 AGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGI 148 (297)
T ss_dssp SSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEE
T ss_pred CCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEEC
Confidence 99 8777777666 367888999 578898888 334555554432222344444443 489999999999887 777
Q ss_pred CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC-CCceeEEEcCC-CCeEE
Q psy4876 438 NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS-SGACLDSIDTK-SQVCA 515 (609)
Q Consensus 438 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~-t~~~~~~~~~~-~~v~s 515 (609)
.|+.+.||+++... .....+..+...+.+++|+|++..+++++ ..++.+++|++. .+..+..+..+ ..+..
T Consensus 149 ~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 221 (297)
T 2ojh_A 149 RDQVFDIYSMDIDS-----GVETRLTHGEGRNDGPDYSPDGRWIYFNS--SRTGQMQIWRVRVDGSSVERITDSAYGDWF 221 (297)
T ss_dssp ETTEEEEEEEETTT-----CCEEECCCSSSCEEEEEECTTSSEEEEEE--CTTSSCEEEEEETTSSCEEECCCCSEEEEE
T ss_pred CCCceEEEEEECCC-----CcceEcccCCCccccceECCCCCEEEEEe--cCCCCccEEEECCCCCCcEEEecCCcccCC
Confidence 89999999864321 34456677888999999999997776665 358889999886 45555555544 47889
Q ss_pred EEEcCCCCeEEEEEec---------CCCeEEEEECCCCce--EEEEeCCCCCEEEEEEeCCCCEEEEEECCC
Q psy4876 516 LLWNSDYKELVSAHGF---------AQNQLIIWKYPSLVK--VAELHGHSARVLNLAMSPDETTVLSAGADE 576 (609)
Q Consensus 516 l~~s~~g~~l~~~sG~---------~dg~I~Iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg 576 (609)
+.|+|++++|++++.. .++.|++||+.+++. +..+.+|...+.+++|+|||++|++++.|.
T Consensus 222 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 222 PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 9999999999887543 126799999988765 445557888999999999999999888764
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-22 Score=208.35 Aligned_cols=266 Identities=12% Similarity=0.169 Sum_probs=194.1
Q ss_pred EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCC-CeEEEEe
Q psy4876 285 VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSL-GTVQLWD 363 (609)
Q Consensus 285 ~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~d-g~I~iwd 363 (609)
.+.++.|++|++... +....+..+.+...+.+++|+|+|++|++++.+ +.|.+|+
T Consensus 11 ~~~~~~v~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~ 66 (343)
T 1ri6_A 11 SPESQQIHVWNLNHE------------------------GALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 66 (343)
T ss_dssp EGGGTEEEEEEECTT------------------------SCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCCeEEEEEECCC------------------------CcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEE
Confidence 356899999998631 444555555577889999999999999988886 9999999
Q ss_pred CC--CCe--eEEEecCCCCceEEEEe--cCCEEEEEe-cCCeEEEEEcCCCC--eeEEEEccCCCCeEEEEEccCCCEEE
Q psy4876 364 VS--AKK--KCRTMDGHDVRVGALAW--NTYILSSGS-RCGNIVHHDVRSRD--HKVALLQNHTQEVCGLKWSPDGRYLA 434 (609)
Q Consensus 364 ~~--~~~--~~~~l~~h~~~V~~l~~--~~~~L~sgs-~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~spdg~~la 434 (609)
+. +++ .+..+..+. .+..++| ++..|++++ .++.|.+||+..+. .....+.. ...+.+++|+|+|++|+
T Consensus 67 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~ 144 (343)
T 1ri6_A 67 IAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLW 144 (343)
T ss_dssp ECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEE
T ss_pred ecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEE
Confidence 97 444 344555444 7888999 467666655 58899999995221 23344443 34688999999999888
Q ss_pred EEe-CCCcEEEEeCCC-CCCCCCccceE--eecC-CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC--Cce--eE
Q psy4876 435 SGG-NDNLLNIWSGVP-GQHTFSTQPIH--SLSR-HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS--GAC--LD 505 (609)
Q Consensus 435 sgs-~Dg~I~iwd~~~-~~~~~~~~~~~--~~~~-h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t--~~~--~~ 505 (609)
+++ .++.|++||+.. +.. ..+. .+.. ....+.+++|+|++..+++++ ..++.|.+||+.. ++. ..
T Consensus 145 ~~~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~--~~~~~i~~~~~~~~~g~~~~~~ 218 (343)
T 1ri6_A 145 VPALKQDRICLFTVSDDGHL----VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN--ELNSSVDVWELKDPHGNIECVQ 218 (343)
T ss_dssp EEEGGGTEEEEEEECTTSCE----EEEEEEEEECSTTCCEEEEEECTTSSEEEEEE--TTTTEEEEEESSCTTSCCEEEE
T ss_pred EecCCCCEEEEEEecCCCce----eeecccccccCCCCCcceEEECCCCCEEEEEe--CCCCEEEEEEecCCCCcEEEEe
Confidence 887 889999999986 421 1111 2222 344788999999998777775 3789999999953 433 22
Q ss_pred EEc---C----CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC----CCceEEEEeCCCCCEEEEEEeCCCCEEEEEE-
Q psy4876 506 SID---T----KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYP----SLVKVAELHGHSARVLNLAMSPDETTVLSAG- 573 (609)
Q Consensus 506 ~~~---~----~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~----~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s- 573 (609)
.+. . ...+..++|+|++++++++ +..++.|.+||+. ..+.+..+..+.. +.+++|+|+|++|++++
T Consensus 219 ~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~ 296 (343)
T 1ri6_A 219 TLDMMPENFSDTRWAADIHITPDGRHLYAC-DRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQ 296 (343)
T ss_dssp EEECSCTTCCSCCCEEEEEECTTSSEEEEE-ETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECT
T ss_pred eccccCccccccCCccceEECCCCCEEEEE-ecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecC
Confidence 222 1 1256789999999988865 3478999999998 3345555655544 88999999999988887
Q ss_pred CCCCEEEEEcC
Q psy4876 574 ADETLRLWKIF 584 (609)
Q Consensus 574 ~Dg~I~iWdl~ 584 (609)
.|+.|.+|++.
T Consensus 297 ~~~~v~v~~~d 307 (343)
T 1ri6_A 297 KSHHISVYEIV 307 (343)
T ss_dssp TTCEEEEEEEE
T ss_pred CCCeEEEEEEc
Confidence 58999999665
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.5e-23 Score=234.98 Aligned_cols=277 Identities=14% Similarity=0.078 Sum_probs=207.2
Q ss_pred eEEEEEecCCC--eEEEEc-CC-----eEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CC------
Q psy4876 271 YLNLIDWSHFN--VLAVAL-GG-----SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GN------ 335 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~-dg-----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~------ 335 (609)
.+..++||||| +++++. |+ .|++||+.+ +....+.... +.
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~-------------------------g~~~~~~~~~~~~~~~~~~ 92 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS-------------------------GQTRLLVDSKVVLPGTETL 92 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT-------------------------CCEEEEECGGGTC------
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCC-------------------------CceeEccchhhcccccccc
Confidence 47789999997 555666 77 899999988 3333333222 11
Q ss_pred ----------------CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe--eEEEecCCCCceEEEEe--cCCEEEEEec
Q psy4876 336 ----------------ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK--KCRTMDGHDVRVGALAW--NTYILSSGSR 395 (609)
Q Consensus 336 ----------------~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~--~~~~L~sgs~ 395 (609)
..|.+++|+|||++|++++. +.|.+||+.++. ....+..|...+..++| +|+.|+.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~- 170 (741)
T 2ecf_A 93 SDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR- 170 (741)
T ss_dssp --------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-
T ss_pred cchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-
Confidence 34889999999999999887 999999999873 45567778889999999 678888887
Q ss_pred CCeEEEEEcCCCCeeEEEEccCCCC----------------eEEEEEccCCCEEEEEeCCC-------------------
Q psy4876 396 CGNIVHHDVRSRDHKVALLQNHTQE----------------VCGLKWSPDGRYLASGGNDN------------------- 440 (609)
Q Consensus 396 dg~I~iwd~~~~~~~~~~~~~h~~~----------------V~~l~~spdg~~lasgs~Dg------------------- 440 (609)
++.|++||+.++. .......+... +.+++|+|||++|++++.|+
T Consensus 171 ~~~i~~~d~~~g~-~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~ 249 (741)
T 2ecf_A 171 GRNLWVIDLASGR-QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVI 249 (741)
T ss_dssp TTEEEEEETTTTE-EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred CCcEEEEecCCCC-EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccce
Confidence 4699999998863 33333333332 47799999999999998765
Q ss_pred --------------cEEEEeCCC-CCCCCCccceEeec--CCcccEEEEEEcCCCCcEEEEEe--ccCCCeEEEEECCCC
Q psy4876 441 --------------LLNIWSGVP-GQHTFSTQPIHSLS--RHQAAVKAIAWCPWSPNVLASGG--GTADRHIYFWNVSSG 501 (609)
Q Consensus 441 --------------~I~iwd~~~-~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~llasgg--Gs~Dg~I~iwd~~t~ 501 (609)
.|++||+.+ + +...... .|...+..++| |+|..+++++. +..+..|++||+.++
T Consensus 250 ~~~~~~~g~~~~~~~l~~~d~~~~~------~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 250 EQRYPAAGDANVQVKLGVISPAEQA------QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN 322 (741)
T ss_dssp EEECCBTTSCCCEEEEEEECSSTTC------CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC
T ss_pred EeecCCCCCCCCeeEEEEEECCCCC------ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC
Confidence 789999987 6 3322222 47788999999 99987776542 234688999999999
Q ss_pred ceeEEEcCCC-----CeEEEEEcCCCCeEEEEEecCCCeEEEEECC-CCceEEEEeCCCCCEEEE-EEeCCCCEEEEE-E
Q psy4876 502 ACLDSIDTKS-----QVCALLWNSDYKELVSAHGFAQNQLIIWKYP-SLVKVAELHGHSARVLNL-AMSPDETTVLSA-G 573 (609)
Q Consensus 502 ~~~~~~~~~~-----~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~-~~~~~~~l~~h~~~V~~l-~~spdg~~L~s~-s 573 (609)
++...+..+. .+..++|+|+|+.+++ +..++.+.||.+. .+. ...+..|...|..+ .|+|||+.|+.. +
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~--~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~ 399 (741)
T 2ecf_A 323 QQRVLAHETSPTWVPLHNSLRFLDDGSILWS--SERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAG 399 (741)
T ss_dssp CEEEEEEEECSSCCCCCSCCEECTTSCEEEE--ECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEEC
T ss_pred ceEEEEEcCCCCcCCcCCceEECCCCeEEEE--ecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEe
Confidence 8877665433 3568999999996655 4478877777765 344 77778888888887 599999977654 4
Q ss_pred CCC--CEEEEEcCC
Q psy4876 574 ADE--TLRLWKIFE 585 (609)
Q Consensus 574 ~Dg--~I~iWdl~~ 585 (609)
.|+ .++||++..
T Consensus 400 ~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 400 IESARESQIYAVPL 413 (741)
T ss_dssp SSCTTCBEEEEEET
T ss_pred CCCCceEEEEEEEc
Confidence 455 899999864
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-21 Score=201.16 Aligned_cols=266 Identities=15% Similarity=0.117 Sum_probs=209.0
Q ss_pred EEEEEecCCC-eEEEEc--------CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEE
Q psy4876 272 LNLIDWSHFN-VLAVAL--------GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVA 342 (609)
Q Consensus 272 v~~l~wsp~~-lla~s~--------dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~ 342 (609)
+..++|+|++ .+.++. ++.|++||..+ ++...... ....+.+++
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~-------------------------~~~~~~~~--~~~~~~~~~ 95 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT-------------------------LEVTQAIH--NDLKPFGAT 95 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT-------------------------CCEEEEEE--ESSCCCSEE
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC-------------------------CeEEEEEe--cCCCcceEE
Confidence 5679999986 444333 56899999988 55433333 334578899
Q ss_pred EccCCCEEEEE-eCCCeEEEEeCCCCeeEEEecCCCCc---------eEEEEe--cCCEEEEEe--cCCeEEEEEcCCCC
Q psy4876 343 WIQEGYMLGVG-TSLGTVQLWDVSAKKKCRTMDGHDVR---------VGALAW--NTYILSSGS--RCGNIVHHDVRSRD 408 (609)
Q Consensus 343 ~spdg~~Lasg-s~dg~I~iwd~~~~~~~~~l~~h~~~---------V~~l~~--~~~~L~sgs--~dg~I~iwd~~~~~ 408 (609)
|+|+|++++++ ..++.|.+||..+++.+..+..+... +.+++| +++.+++++ .++.|.+||..++
T Consensus 96 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~- 174 (353)
T 3vgz_A 96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI- 174 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT-
T ss_pred ECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC-
Confidence 99999866555 45799999999999988888765432 678888 567666665 4789999999986
Q ss_pred eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC----CcccEEEEEEcCCCCcEEEE
Q psy4876 409 HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR----HQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 409 ~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~----h~~~V~~l~~sp~~~~llas 484 (609)
..+..+..+...+.+++|+|+|++|++++.++.|.+||+.++ +.+..+.. +...+.+++|+|++..++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 175 KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN------KILSRKKLLDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT------EEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC------eEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence 466666656667889999999999999999999999999987 45544443 45568899999999877776
Q ss_pred EeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeC
Q psy4876 485 GGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP 564 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp 564 (609)
. ..++.|.+||+.+++.+..+..... ..++|++++++++++. ..++.|.+||..+++.+..+..+ ..+.+++|+|
T Consensus 249 ~--~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~-~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~ 323 (353)
T 3vgz_A 249 D--SKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTH-RQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSA 323 (353)
T ss_dssp E--SSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEE-TTTTEEEEEETTTTEEEEEEECC-SEEEEEEECT
T ss_pred e--CCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEE-CCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcC
Confidence 5 3679999999999999888876554 5799999999877753 46899999999999988887654 4689999999
Q ss_pred CCCEEEEEECCC
Q psy4876 565 DETTVLSAGADE 576 (609)
Q Consensus 565 dg~~L~s~s~Dg 576 (609)
||++|+++..++
T Consensus 324 dg~~l~v~~~~~ 335 (353)
T 3vgz_A 324 DGKTLYVSVKQK 335 (353)
T ss_dssp TSCEEEEEEECC
T ss_pred CCCEEEEEEccc
Confidence 999887776653
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.9e-22 Score=211.41 Aligned_cols=239 Identities=13% Similarity=0.063 Sum_probs=188.9
Q ss_pred CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCC---eEEEEeCC
Q psy4876 289 GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLG---TVQLWDVS 365 (609)
Q Consensus 289 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg---~I~iwd~~ 365 (609)
+.|++||+.. +....+.. |...|.+++|+|+|++||+++.++ .|++||+.
T Consensus 159 ~~i~i~d~~g-------------------------~~~~~l~~--~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~ 211 (415)
T 2hqs_A 159 YELRVSDYDG-------------------------YNQFVVHR--SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA 211 (415)
T ss_dssp EEEEEEETTS-------------------------CSCEEEEE--ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred ceEEEEcCCC-------------------------CCCEEEeC--CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECC
Confidence 7999999976 44333322 778999999999999999999875 99999999
Q ss_pred CCeeEEEecCCCCceEEEEe--cCCEEE-EEecCCe--EEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCC-
Q psy4876 366 AKKKCRTMDGHDVRVGALAW--NTYILS-SGSRCGN--IVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGND- 439 (609)
Q Consensus 366 ~~~~~~~l~~h~~~V~~l~~--~~~~L~-sgs~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~D- 439 (609)
+++.. .+..|...+.+++| ++..|+ +++.+|. |++||+.++. ...+..|...+.+++|+|||++|++++.+
T Consensus 212 tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~l~~~s~~~ 288 (415)
T 2hqs_A 212 NGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAFTSDQA 288 (415)
T ss_dssp TCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEECCCCSSCEEEEEECTTSSEEEEEECTT
T ss_pred CCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC--EEeCcCCCCcccceEECCCCCEEEEEECCC
Confidence 88765 56678889999999 567666 6666654 9999998763 46777888999999999999999988864
Q ss_pred C--cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEE
Q psy4876 440 N--LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALL 517 (609)
Q Consensus 440 g--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~ 517 (609)
+ .|++||+.++ + ...+..+...+.+++|+|+|..+++++....+..|++||+.+++.. .+..+..+.+++
T Consensus 289 g~~~i~~~d~~~~------~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~ 360 (415)
T 2hqs_A 289 GRPQVYKVNINGG------A-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPS 360 (415)
T ss_dssp SSCEEEEEETTSS------C-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEE
T ss_pred CCcEEEEEECCCC------C-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeE
Confidence 4 6888898876 2 3445567778999999999976666553112468999999998874 444445899999
Q ss_pred EcCCCCeEEEEEecCCC--eEEEEECCCCceEEEEeCCCCCEEEEEEeCCCC
Q psy4876 518 WNSDYKELVSAHGFAQN--QLIIWKYPSLVKVAELHGHSARVLNLAMSPDET 567 (609)
Q Consensus 518 ~s~~g~~l~~~sG~~dg--~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 567 (609)
|+|+|+.|++++. .++ .|++||+. +.....+.+|.+.|.+++|+|...
T Consensus 361 ~spdg~~l~~~s~-~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 361 LAPNGTMVIYSSS-QGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ECTTSSEEEEEEE-ETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred EcCCCCEEEEEEc-CCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 9999999988653 233 79999986 556778889999999999999643
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-23 Score=235.79 Aligned_cols=280 Identities=12% Similarity=0.159 Sum_probs=202.0
Q ss_pred EEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCC---CeEEEEEccCC
Q psy4876 272 LNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNE---NVCSVAWIQEG 347 (609)
Q Consensus 272 v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~---~V~~v~~spdg 347 (609)
...++|+||+ +++.+.|+.|++||+.+ +....+... +.. .|.+++|+|||
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~-------------------------g~~~~~~~~-~~~~~~~v~~~~~SpDg 72 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVET-------------------------NTSTVLIEG-KKIESLRAIRYEISPDR 72 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGG-------------------------CCCEEEECT-TTTTTTTCSEEEECTTS
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCC-------------------------CcEEEEecc-ccccccccceEEECCCC
Confidence 4568999997 66667899999999988 555444332 332 49999999999
Q ss_pred CEEEEEeCC---------CeEEEEeCCCCeeEEEec---CCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEE
Q psy4876 348 YMLGVGTSL---------GTVQLWDVSAKKKCRTMD---GHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 348 ~~Lasgs~d---------g~I~iwd~~~~~~~~~l~---~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~ 413 (609)
++||+++.+ +.|.+||+.+++. ..+. +|...+..++| +|+.|+.++. +.|++||+.++. ....
T Consensus 73 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-~~~~ 149 (723)
T 1xfd_A 73 EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-AIRV 149 (723)
T ss_dssp SEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-CEEE
T ss_pred CEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc-eEEE
Confidence 999999874 7889999998876 3343 34555888889 5788888876 799999998864 4444
Q ss_pred EccCCCCe------------------EEEEEccCCCEEEEEeCCC----------------------------------c
Q psy4876 414 LQNHTQEV------------------CGLKWSPDGRYLASGGNDN----------------------------------L 441 (609)
Q Consensus 414 ~~~h~~~V------------------~~l~~spdg~~lasgs~Dg----------------------------------~ 441 (609)
...+...+ .+++|+|||++|++++.|+ .
T Consensus 150 ~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 229 (723)
T 1xfd_A 150 VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSIS 229 (723)
T ss_dssp ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEE
T ss_pred ecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeE
Confidence 44433333 7899999999999987653 7
Q ss_pred EEEEeCCCCCCCCCccceEeecCC------cccEEEEEEcCCCCcEEEEEe-ccCCCeEEEEECCCCceeEEEcCC--CC
Q psy4876 442 LNIWSGVPGQHTFSTQPIHSLSRH------QAAVKAIAWCPWSPNVLASGG-GTADRHIYFWNVSSGACLDSIDTK--SQ 512 (609)
Q Consensus 442 I~iwd~~~~~~~~~~~~~~~~~~h------~~~V~~l~~sp~~~~llasgg-Gs~Dg~I~iwd~~t~~~~~~~~~~--~~ 512 (609)
|++||+.++ .....+..+ ...+..++|+|||..+++... +..+..|++||+.++++...+..+ ..
T Consensus 230 l~~~d~~~~------~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 303 (723)
T 1xfd_A 230 LHVIGLNGP------THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAW 303 (723)
T ss_dssp EEEEESSSS------CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred EEEEECCCC------ceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCE
Confidence 999999877 333444433 677899999999975434321 123578999999999877665422 22
Q ss_pred e----EEEEEcCCCCeEEEEEecCCC------eEEEEE-CCCCc--eEEEEeCCCCCEEE-EEEeCCCCEEEEEECC---
Q psy4876 513 V----CALLWNSDYKELVSAHGFAQN------QLIIWK-YPSLV--KVAELHGHSARVLN-LAMSPDETTVLSAGAD--- 575 (609)
Q Consensus 513 v----~sl~~s~~g~~l~~~sG~~dg------~I~Iwd-~~~~~--~~~~l~~h~~~V~~-l~~spdg~~L~s~s~D--- 575 (609)
+ ..++|+|+|+.|+.+++..++ .|.+|| ...+. +...+..+...+.. ++|+|||+.|+..+.+
T Consensus 304 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 383 (723)
T 1xfd_A 304 LHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLP 383 (723)
T ss_dssp CCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCT
T ss_pred EeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCC
Confidence 3 378999999998876444666 577777 34443 14445443444554 6999999999877665
Q ss_pred CCEEEEEcCCC
Q psy4876 576 ETLRLWKIFEK 586 (609)
Q Consensus 576 g~I~iWdl~~~ 586 (609)
+.++||++...
T Consensus 384 ~~~~l~~~~~~ 394 (723)
T 1xfd_A 384 RRRQLYSANTV 394 (723)
T ss_dssp TCCEEEEECSS
T ss_pred cceEEEEEeCC
Confidence 78999999754
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-22 Score=202.43 Aligned_cols=183 Identities=13% Similarity=0.137 Sum_probs=140.7
Q ss_pred cCCCEEEEEe--CCCeEEEEeC-CCCeeEEEecCCCCceEEEEe-----cCCEEEEEecCCeEEEEEcCCCCeeEEEEcc
Q psy4876 345 QEGYMLGVGT--SLGTVQLWDV-SAKKKCRTMDGHDVRVGALAW-----NTYILSSGSRCGNIVHHDVRSRDHKVALLQN 416 (609)
Q Consensus 345 pdg~~Lasgs--~dg~I~iwd~-~~~~~~~~l~~h~~~V~~l~~-----~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~ 416 (609)
++|+++.++. .|+.|++|++ .+++.+..+.+|...+..++| ++.+|++|+.|++|++||+.++ +.+.++.+
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g 221 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHI 221 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEEC
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcC
Confidence 4555555543 5889999999 457888888888888877777 3589999999999999999997 47777876
Q ss_pred CC---CCeEEEEEccCCCEE------------EEEeCCCcEEEEeCCCCCCCCCccceEee-----cCCcccEEEEEEcC
Q psy4876 417 HT---QEVCGLKWSPDGRYL------------ASGGNDNLLNIWSGVPGQHTFSTQPIHSL-----SRHQAAVKAIAWCP 476 (609)
Q Consensus 417 h~---~~V~~l~~spdg~~l------------asgs~Dg~I~iwd~~~~~~~~~~~~~~~~-----~~h~~~V~~l~~sp 476 (609)
|. ..+++++|+|+|.++ ++|+.|++|++||..++ ..+..+ .+|...+.+..++
T Consensus 222 ~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg------k~l~v~~~~~p~Gh~~~~lsg~~s- 294 (356)
T 2w18_A 222 DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT------LSVGVMLYCLPPGQAGRFLEGDVK- 294 (356)
T ss_dssp CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT------EEEEEEEECCCTTCCCCEEEEEEE-
T ss_pred CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC------EEEEEEEeeccCCCcceeEccccC-
Confidence 54 467888999999886 56888999999999987 444433 3565555544444
Q ss_pred CCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCC-C-eEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 477 WSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKS-Q-VCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 477 ~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~-~-v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
+ .++++| +.|++|+|||+.+++++.++..+. . +..++|+|+|++|++ |+.|++|+|||+
T Consensus 295 -g-~~lASg--S~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaS--GS~D~TIklWd~ 355 (356)
T 2w18_A 295 -D-HCAAAI--LTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLA--GQKDGNIFVYHY 355 (356)
T ss_dssp -T-TEEEEE--ETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEE--ECTTSCEEEEEE
T ss_pred -C-CEEEEE--cCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEE--EECCCcEEEecC
Confidence 3 467776 489999999999999999998664 4 446899999999998 569999999995
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-21 Score=197.30 Aligned_cols=269 Identities=13% Similarity=0.071 Sum_probs=202.0
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCC-CeEEEEEccCCCEEEE-EeCCCeE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNE-NVCSVAWIQEGYMLGV-GTSLGTV 359 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~-~V~~v~~spdg~~Las-gs~dg~I 359 (609)
+++++.++.|++||..+ ++......+.+.. .+.+++|+|+|+++++ +..++.|
T Consensus 4 ~v~~~~~~~v~~~d~~~-------------------------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v 58 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEK-------------------------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESL 58 (337)
T ss_dssp EEEEETTTEEEEEETTT-------------------------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEE
T ss_pred EEEcCCCCeEEEEECCC-------------------------CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeE
Confidence 56788899999999987 5544333332222 5889999999977654 5557899
Q ss_pred EEEeCCCCeeEEEecC-C----CCceEEEEe--cCCEEEEEe------------cCCeEEEEEcCCCCeeEEEEccCCCC
Q psy4876 360 QLWDVSAKKKCRTMDG-H----DVRVGALAW--NTYILSSGS------------RCGNIVHHDVRSRDHKVALLQNHTQE 420 (609)
Q Consensus 360 ~iwd~~~~~~~~~l~~-h----~~~V~~l~~--~~~~L~sgs------------~dg~I~iwd~~~~~~~~~~~~~h~~~ 420 (609)
.+||+.+++.+..+.. + ...+..++| ++..|++++ .++.|.+||+.++ ..+..+.. ...
T Consensus 59 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~-~~~ 136 (337)
T 1pby_B 59 VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL-SRRKAFEA-PRQ 136 (337)
T ss_dssp EEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT-EEEEEEEC-CSS
T ss_pred EEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC-cEEEEEeC-CCC
Confidence 9999999988877653 2 125667888 477888776 5799999999876 34555543 456
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC---------
Q psy4876 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR--------- 491 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg--------- 491 (609)
+.+++|+|+|++|+++ ++.|++||+.++ +.+..+..+.. ...+.|+|++..+++++. .++
T Consensus 137 ~~~~~~s~dg~~l~~~--~~~i~~~d~~~~------~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~--~~~~~~~~~~~~ 205 (337)
T 1pby_B 137 ITMLAWARDGSKLYGL--GRDLHVMDPEAG------TLVEDKPIQSW-EAETYAQPDVLAVWNQHE--SSGVMATPFYTA 205 (337)
T ss_dssp CCCEEECTTSSCEEEE--SSSEEEEETTTT------EEEEEECSTTT-TTTTBCCCBCCCCCCCCT--TTTEEEEEEEEE
T ss_pred cceeEECCCCCEEEEe--CCeEEEEECCCC------cEeeeeecccc-CCCceeCCCccEEeeecc--CCCceeeeeecc
Confidence 7889999999988887 689999999987 45555543331 112378999877766542 233
Q ss_pred --------------eEEEEECCCCceeEEEc---CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCC
Q psy4876 492 --------------HIYFWNVSSGACLDSID---TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHS 554 (609)
Q Consensus 492 --------------~I~iwd~~t~~~~~~~~---~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~ 554 (609)
.|.+||+.+++.. .+. ....+.+++|+|++++++++ ++.|.+||+.+++.+..+..+
T Consensus 206 ~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~----~~~v~~~d~~~~~~~~~~~~~- 279 (337)
T 1pby_B 206 RKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA----YNVLESFDLEKNASIKRVPLP- 279 (337)
T ss_dssp BTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE----ESEEEEEETTTTEEEEEEECS-
T ss_pred ccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe----CCeEEEEECCCCcCcceecCC-
Confidence 5799999998875 332 23478899999999999884 689999999999888877643
Q ss_pred CCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 555 ARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 555 ~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
..+.+++|+|||++|++++.|+.|++||+.+++.......
T Consensus 280 ~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 280 HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 4678999999999999999999999999998876554433
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=222.80 Aligned_cols=277 Identities=11% Similarity=0.106 Sum_probs=206.7
Q ss_pred eeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCE
Q psy4876 270 YYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYM 349 (609)
Q Consensus 270 ~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~ 349 (609)
..|..++|||++.++.+.++.|++||+.+ +....+.. +...+.+++|+|||++
T Consensus 82 ~~v~~~~~spd~~~~~~~~~~i~~~d~~~-------------------------~~~~~l~~--~~~~~~~~~~SpdG~~ 134 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLFTQGGLVGFDMLA-------------------------RKVTYLFD--TNEETASLDFSPVGDR 134 (706)
T ss_dssp CCCEEEEETTTTEEEEEETTEEEEEETTT-------------------------TEEEEEEC--CTTCCTTCEECTTSSE
T ss_pred cCceeEEECCCCeEEEEECCEEEEEECCC-------------------------CceEEccC--CcccccCCcCCCCCCE
Confidence 35788999999977777889999999987 55443332 5667889999999999
Q ss_pred EEEEeCCCeEEEEeCCC-----CeeEEEecCCCCc--------------eEEEEe--cCCEEEEEe--------------
Q psy4876 350 LGVGTSLGTVQLWDVSA-----KKKCRTMDGHDVR--------------VGALAW--NTYILSSGS-------------- 394 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~-----~~~~~~l~~h~~~--------------V~~l~~--~~~~L~sgs-------------- 394 (609)
||++ .++.|.+||+.+ ++.......+... +.++.| +++.|++++
T Consensus 135 la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~ 213 (706)
T 2z3z_A 135 VAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDY 213 (706)
T ss_dssp EEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEEC
T ss_pred EEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeecc
Confidence 9985 679999999998 7766655544443 478889 678888887
Q ss_pred -------------------cCCeEEEEEcCCCCeeEEEE--ccCCCCeEEEEEccCCCEEEEEeCCC-----cEEEEeCC
Q psy4876 395 -------------------RCGNIVHHDVRSRDHKVALL--QNHTQEVCGLKWSPDGRYLASGGNDN-----LLNIWSGV 448 (609)
Q Consensus 395 -------------------~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~lasgs~Dg-----~I~iwd~~ 448 (609)
.+..|.+||+.++. ..... ..|...+.+++|+|||++|++++.++ .|++||+.
T Consensus 214 ~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~ 292 (706)
T 2z3z_A 214 HPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK-TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAE 292 (706)
T ss_dssp CSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE-EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETT
T ss_pred CCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc-eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECC
Confidence 44679999998864 22222 24667899999999999999988775 89999998
Q ss_pred CCCCCCCccceEeec--CCcc---cEEEEEEcC--CCCcEEEEEeccCCCeEEEEECC-CCceeEEEcCC-CCeEE-EEE
Q psy4876 449 PGQHTFSTQPIHSLS--RHQA---AVKAIAWCP--WSPNVLASGGGTADRHIYFWNVS-SGACLDSIDTK-SQVCA-LLW 518 (609)
Q Consensus 449 ~~~~~~~~~~~~~~~--~h~~---~V~~l~~sp--~~~~llasggGs~Dg~I~iwd~~-t~~~~~~~~~~-~~v~s-l~~ 518 (609)
++. ....+. .+.. .+.+++|+| +|. +++++ ..|+.+++|++. ++..+..+..+ ..+.. ++|
T Consensus 293 ~g~------~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~--~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~ 363 (706)
T 2z3z_A 293 TGR------FVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQS--RRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGF 363 (706)
T ss_dssp TCC------EEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEE--CTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEE
T ss_pred CCc------eeeEEEEccCCCeECccCCceeecCCCCE-EEEEE--ccCCccEEEEEECCCCEEEecCCCCeEEEeeeEE
Confidence 872 222221 1222 246789999 886 55555 378888888876 66677776554 35666 799
Q ss_pred cCCCCeEEEEEecCCC----eEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECC----CCEEEEEcCCCc
Q psy4876 519 NSDYKELVSAHGFAQN----QLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGAD----ETLRLWKIFEKV 587 (609)
Q Consensus 519 s~~g~~l~~~sG~~dg----~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D----g~I~iWdl~~~~ 587 (609)
+|+++.|++++. .++ .|..||..++. +..+ .|...+.+++|+|||++|+.++.+ +.|++||+.++.
T Consensus 364 spdg~~l~~~~~-~~~~~~~~l~~~d~~~~~-~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 364 DPKGTRLYFEST-EASPLERHFYCIDIKGGK-TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CTTSSEEEEEES-SSCTTCBEEEEEETTCCC-CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred cCCCCEEEEEec-CCCCceEEEEEEEcCCCC-ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 999999887654 343 77788887765 3334 367789999999999988876554 459999998765
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-20 Score=193.89 Aligned_cols=253 Identities=14% Similarity=0.165 Sum_probs=181.3
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeC---CCeEEEEeCCCCe--eEEEecCCCCceEEEEe--cCCEEEEEe-c
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTS---LGTVQLWDVSAKK--KCRTMDGHDVRVGALAW--NTYILSSGS-R 395 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~---dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~--~~~~L~sgs-~ 395 (609)
+....+....+...+..++|+|+|+ |++++. ++.|.+||+.+++ .+..+..+...+..++| ++++|++++ .
T Consensus 28 g~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~ 106 (347)
T 3hfq_A 28 KTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH 106 (347)
T ss_dssp TEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT
T ss_pred CeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC
Confidence 4555544444567788999999999 555544 6899999997765 44455557778888888 577787777 7
Q ss_pred CCeEEEEEcCCCCe--eEEEEcc---------CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCCCCCCccceEeec
Q psy4876 396 CGNIVHHDVRSRDH--KVALLQN---------HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGV-PGQHTFSTQPIHSLS 463 (609)
Q Consensus 396 dg~I~iwd~~~~~~--~~~~~~~---------h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~-~~~~~~~~~~~~~~~ 463 (609)
++.|.+|++..... .+..+.. +...+.+++|+|+|+++++...++.|++||+. .+.. ..+..+.
T Consensus 107 ~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~----~~~~~~~ 182 (347)
T 3hfq_A 107 KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL----SEQSVLT 182 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCE----EEEEEEE
T ss_pred CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcE----EEeeeEE
Confidence 89999999964321 2222221 12348899999999966666678899999998 3311 1222222
Q ss_pred CC-cccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC--Cce--eEEEcCC-------CCeEEEEEcCCCCeEEEEEec
Q psy4876 464 RH-QAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS--GAC--LDSIDTK-------SQVCALLWNSDYKELVSAHGF 531 (609)
Q Consensus 464 ~h-~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t--~~~--~~~~~~~-------~~v~sl~~s~~g~~l~~~sG~ 531 (609)
.+ ...+..++|+|+|..+++++ ..++.|.+|++.. ++. +..+... ..+..++|+|+|++|+++. .
T Consensus 183 ~~~g~~p~~~~~spdg~~l~v~~--~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~-~ 259 (347)
T 3hfq_A 183 MEAGFGPRHLVFSPDGQYAFLAG--ELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSN-R 259 (347)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEE--TTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEE-E
T ss_pred cCCCCCCceEEECCCCCEEEEEe--CCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEe-C
Confidence 22 23678899999998777765 3689999999874 543 2222221 3588999999999887653 3
Q ss_pred CCCeEEEEECC---CCceEEEEeCCCCCEEEEEEeCCCCEEEEEECC-CCEEEEEcC
Q psy4876 532 AQNQLIIWKYP---SLVKVAELHGHSARVLNLAMSPDETTVLSAGAD-ETLRLWKIF 584 (609)
Q Consensus 532 ~dg~I~Iwd~~---~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D-g~I~iWdl~ 584 (609)
.++.|.+|++. ..+.+..+..+...+.+++|+|||++|++++.+ +.|.+|++.
T Consensus 260 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 260 GYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp TTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 68999999987 335566667777778999999999999888865 899999664
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-20 Score=189.62 Aligned_cols=264 Identities=11% Similarity=0.078 Sum_probs=184.4
Q ss_pred EEEEEecCCC--eEEEEcC-CeEEEEeCC--CCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccC
Q psy4876 272 LNLIDWSHFN--VLAVALG-GSIYLWNGE--SDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQE 346 (609)
Q Consensus 272 v~~l~wsp~~--lla~s~d-g~I~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spd 346 (609)
+..++|+|++ +++++.+ +.|.+|++. + +....+..+.....+.+++|+|+
T Consensus 40 ~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~s~d 94 (343)
T 1ri6_A 40 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD-------------------------GALTFAAESALPGSLTHISTDHQ 94 (343)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEEECTTT-------------------------CCEEEEEEEECSSCCSEEEECTT
T ss_pred CceEEECCCCCEEEEeecCCCeEEEEEecCCC-------------------------CceeeccccccCCCCcEEEEcCC
Confidence 5669999986 5556665 899999997 4 55555555553448899999999
Q ss_pred CCEEEEEeC-CCeEEEEeCC---CCeeEEEecCCCCceEEEEe--cCCEEEEEe-cCCeEEEEEcCCCCeeEE----EEc
Q psy4876 347 GYMLGVGTS-LGTVQLWDVS---AKKKCRTMDGHDVRVGALAW--NTYILSSGS-RCGNIVHHDVRSRDHKVA----LLQ 415 (609)
Q Consensus 347 g~~Lasgs~-dg~I~iwd~~---~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs-~dg~I~iwd~~~~~~~~~----~~~ 415 (609)
|++|++++. ++.|.+||+. ..+.+..+..+ ..+.+++| ++..|++++ .++.|.+||+........ .+.
T Consensus 95 g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 173 (343)
T 1ri6_A 95 GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT 173 (343)
T ss_dssp SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc
Confidence 998877665 8899999994 34455555544 45788888 466777776 899999999987322221 222
Q ss_pred -cCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCCCccceEeec---CC---cccEEEEEEcCCCCcEEEEEec
Q psy4876 416 -NHTQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVPGQHTFSTQPIHSLS---RH---QAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 416 -~h~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~---~h---~~~V~~l~~sp~~~~llasggG 487 (609)
.....+.+++|+|+|+++++++ .++.|.+||+...... ......+. .. ...+.+++|+|++..+++++
T Consensus 174 ~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~-- 249 (343)
T 1ri6_A 174 TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN--IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD-- 249 (343)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC--CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE--
T ss_pred cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc--EEEEeeccccCccccccCCccceEECCCCCEEEEEe--
Confidence 2345788999999999776555 7899999999642110 01122221 11 33577899999998777766
Q ss_pred cCCCeEEEEECC--C--CceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC--CCCc--eEEEEeCCCCCEEE
Q psy4876 488 TADRHIYFWNVS--S--GACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKY--PSLV--KVAELHGHSARVLN 559 (609)
Q Consensus 488 s~Dg~I~iwd~~--t--~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~--~~~~--~~~~l~~h~~~V~~ 559 (609)
..++.|.+||+. + .+.+..+.....+..++|+|++++|+++. ..++.|.+|++ .+++ .+..+... ....+
T Consensus 250 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~ 327 (343)
T 1ri6_A 250 RTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG-QKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMW 327 (343)
T ss_dssp TTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEEC-TTTCEEEEEEEETTTTEEEEEEEEECS-SSCCE
T ss_pred cCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEec-CCCCeEEEEEEcCCCceeeEccccccC-CCCee
Confidence 368999999998 3 34555566556689999999999988853 36899999954 4553 34444432 44667
Q ss_pred EEEeCCCC
Q psy4876 560 LAMSPDET 567 (609)
Q Consensus 560 l~~spdg~ 567 (609)
++|.++.+
T Consensus 328 i~~~~~~~ 335 (343)
T 1ri6_A 328 VVVNAHEG 335 (343)
T ss_dssp EEEEEEC-
T ss_pred EEEEcccC
Confidence 78877543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-19 Score=187.56 Aligned_cols=256 Identities=11% Similarity=0.098 Sum_probs=180.5
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCC----CeEEEEeCCC--Ce--eEEEecCCCCceEEEEecCCEEEEEe-
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSL----GTVQLWDVSA--KK--KCRTMDGHDVRVGALAWNTYILSSGS- 394 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~d----g~I~iwd~~~--~~--~~~~l~~h~~~V~~l~~~~~~L~sgs- 394 (609)
+....+... +...+..++|+|+|++|++++.+ +.|.+|++.. ++ .+.....+......+++++.+|++++
T Consensus 39 g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~ 117 (361)
T 3scy_A 39 GESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANY 117 (361)
T ss_dssp CCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEET
T ss_pred CCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEEC
Confidence 555555555 67788899999999999998886 7999998865 43 33444446667788888888777766
Q ss_pred cCCeEEEEEcCCCCee---EEEE--cc--------CCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCC--C-cc
Q psy4876 395 RCGNIVHHDVRSRDHK---VALL--QN--------HTQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVPGQHTF--S-TQ 457 (609)
Q Consensus 395 ~dg~I~iwd~~~~~~~---~~~~--~~--------h~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~~~~~~--~-~~ 457 (609)
.++.|.+|++...... .... .+ +...+.+++|+|+|++|++++ .++.|.+|++....... . ..
T Consensus 118 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~ 197 (361)
T 3scy_A 118 SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFL 197 (361)
T ss_dssp TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCE
T ss_pred CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccccee
Confidence 5789999999754321 1111 11 223468899999999776655 47899999987652100 0 00
Q ss_pred c----eEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce--eEEEcC----CCCeEEEEEcCCCCeEEE
Q psy4876 458 P----IHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC--LDSIDT----KSQVCALLWNSDYKELVS 527 (609)
Q Consensus 458 ~----~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~--~~~~~~----~~~v~sl~~s~~g~~l~~ 527 (609)
. ......+...+..++|+|+++.+++++ ..++.|.+||+.+++. +..+.. ......++|+|+|++|++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~--~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v 275 (361)
T 3scy_A 198 TKGTPEAFKVAPGSGPRHLIFNSDGKFAYLIN--EIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYA 275 (361)
T ss_dssp EEEEEEEEECCTTCCEEEEEECTTSSEEEEEE--TTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEE
T ss_pred ecccccceecCCCCCCeEEEEcCCCCEEEEEc--CCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEE
Confidence 0 111223445678999999998777765 3689999999987754 233322 235789999999999987
Q ss_pred EEecC-CCeEEEEECC--CCc--eEEEEeCCCCCEEEEEEeCCCCEEEEEE-CCCCEEEEEcC
Q psy4876 528 AHGFA-QNQLIIWKYP--SLV--KVAELHGHSARVLNLAMSPDETTVLSAG-ADETLRLWKIF 584 (609)
Q Consensus 528 ~sG~~-dg~I~Iwd~~--~~~--~~~~l~~h~~~V~~l~~spdg~~L~s~s-~Dg~I~iWdl~ 584 (609)
+.. . ++.|.+|++. ++. .+..+.. ...+.+++|+|||++|++++ .++.|.+|++.
T Consensus 276 ~~~-~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 276 SNR-LKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEC-SSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred ECC-CCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 643 4 6899999985 344 4445554 55788999999999998888 57899997665
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=216.37 Aligned_cols=274 Identities=11% Similarity=0.108 Sum_probs=201.2
Q ss_pred eEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCcccccccccccccc---ceeeeeeecCCCCeEEEEEccC
Q psy4876 271 YLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNR---AIDHLMDLEGNENVCSVAWIQE 346 (609)
Q Consensus 271 ~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~h~~~V~~v~~spd 346 (609)
.+..++||||+ .|+.+.++.|++||+.+ + ....+.. +...+.+++|+||
T Consensus 110 ~v~~~~~SpDg~~l~~~~~~~i~~~d~~~-------------------------~~~~~~~~l~~--~~~~~~~~~~SPD 162 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLGGELYLYDLKQ-------------------------EGKAAVRQLTH--GEGFATDAKLSPK 162 (741)
T ss_dssp ESCCCEECTTSSEEEEEETTEEEEEESSS-------------------------CSTTSCCBCCC--SSSCEEEEEECTT
T ss_pred CcceeEECCCCCEEEEEeCCcEEEEECCC-------------------------CCcceEEEccc--CCcccccccCCCC
Confidence 46789999997 66666679999999987 4 3332222 6678999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCc----------------eEEEEe--cCCEEEEEecCC-----------
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVR----------------VGALAW--NTYILSSGSRCG----------- 397 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~----------------V~~l~~--~~~~L~sgs~dg----------- 397 (609)
|++||+++. +.|.+||+.+++.......+... +..++| +++.|++++.|+
T Consensus 163 G~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~ 241 (741)
T 2ecf_A 163 GGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEV 241 (741)
T ss_dssp SSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEE
T ss_pred CCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCC
Confidence 999998875 68999999988776655544432 367888 578888887665
Q ss_pred ----------------------eEEEEEcCC-CCeeEEEEc--cCCCCeEEEEEccCCCEEEEEeC-----CCcEEEEeC
Q psy4876 398 ----------------------NIVHHDVRS-RDHKVALLQ--NHTQEVCGLKWSPDGRYLASGGN-----DNLLNIWSG 447 (609)
Q Consensus 398 ----------------------~I~iwd~~~-~~~~~~~~~--~h~~~V~~l~~spdg~~lasgs~-----Dg~I~iwd~ 447 (609)
.|.+||+.+ +. ...... .|...+..++| |||++|++++. +..|++||+
T Consensus 242 ~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~ 319 (741)
T 2ecf_A 242 YADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ-TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTL 319 (741)
T ss_dssp CSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC-CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEET
T ss_pred CCCcccceEeecCCCCCCCCeeEEEEEECCCCCc-eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEEC
Confidence 788999987 64 333222 47788999999 99999987764 568999999
Q ss_pred CCCCCCCCccceEeecCCcc----cEEEEEEcCCCCcEEEEEeccCCCeEEEEECC-CCceeEEEcCC-CCeEEE-EEcC
Q psy4876 448 VPGQHTFSTQPIHSLSRHQA----AVKAIAWCPWSPNVLASGGGTADRHIYFWNVS-SGACLDSIDTK-SQVCAL-LWNS 520 (609)
Q Consensus 448 ~~~~~~~~~~~~~~~~~h~~----~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~-t~~~~~~~~~~-~~v~sl-~~s~ 520 (609)
.++ +....+..+.. .+..++|+|+|. +++++. .|+.++||.+. .+. ...+..+ ..+..+ .|+|
T Consensus 320 ~~g------~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~--~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~ 389 (741)
T 2ecf_A 320 ASN------QQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSE--RTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE 389 (741)
T ss_dssp TTC------CEEEEEEEECSSCCCCCSCCEECTTSC-EEEEEC--TTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET
T ss_pred CCC------ceEEEEEcCCCCcCCcCCceEECCCCe-EEEEec--CCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC
Confidence 987 44444433332 346889999997 666653 68877777665 344 5555543 467777 5999
Q ss_pred CCCeEEEEEecCCC--eEEEEECCC-CceEEEEeCCCCCEEEEEEeCCCCEEEEEECC----CCEEEEEcCCC
Q psy4876 521 DYKELVSAHGFAQN--QLIIWKYPS-LVKVAELHGHSARVLNLAMSPDETTVLSAGAD----ETLRLWKIFEK 586 (609)
Q Consensus 521 ~g~~l~~~sG~~dg--~I~Iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D----g~I~iWdl~~~ 586 (609)
+++.+++.+. .++ .++||++.. +..+..+.. ...+..++|+|||++|+....+ ..+.+|+..+.
T Consensus 390 dg~~l~~~~~-~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 390 KAGLAYFRAG-IESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp TTTEEEEEEC-SSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred CCCEEEEEEe-CCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 9998876543 455 899999864 555666655 6678999999999988876544 46888887543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.87 E-value=8.2e-20 Score=196.47 Aligned_cols=296 Identities=14% Similarity=0.128 Sum_probs=192.2
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
...+++|+|++++ +++++....|+||+...... .......... . ........+.+...|.+++|+|+|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~------~~~~~~~~~~--~---~~~~~~~~~~~~~~v~~l~~spdg 104 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLI------QNKPGDDPNK--I---VDKVQGLLVPMKFPIHHLALSCDN 104 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCC------CCCTTCCTTC--E---EECCCCEEECCSSCEEEEEECTTS
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhh------hcccccCccc--c---cccCccccccCCCcccEEEEcCCC
Confidence 4468999999974 66655544599987643100 0000000000 0 001111233466789999999999
Q ss_pred CEEE----EEeCCCeEEEEeCCCC--------e---eEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCe
Q psy4876 348 YMLG----VGTSLGTVQLWDVSAK--------K---KCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDH 409 (609)
Q Consensus 348 ~~La----sgs~dg~I~iwd~~~~--------~---~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~ 409 (609)
++|| +|+.|+.|+|||+.++ + .+..+.+|...|.+++|+ +.+|++++.||+|++||++++ .
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~ 183 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-V 183 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-E
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-c
Confidence 9999 6788999999998654 1 256677899999999994 579999999999999999987 4
Q ss_pred eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-------CcccEEEEEEcCCCCcEE
Q psy4876 410 KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-------HQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-------h~~~V~~l~~sp~~~~ll 482 (609)
.+....+|...|.+++|+|+|++|++|+.||.|++||++ + .....+.. |...|.+++|++++..++
T Consensus 184 ~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~------~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~ 256 (434)
T 2oit_A 184 KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L------QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI 256 (434)
T ss_dssp EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C------CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C------cccccccCCcccCCCCceeEEEEEEecCceEEE
Confidence 555666789999999999999999999999999999998 4 23333322 334899999999775444
Q ss_pred EEEeccCCC------eEEEEECCCCc-----eeEEEc-C-----C--CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q psy4876 483 ASGGGTADR------HIYFWNVSSGA-----CLDSID-T-----K--SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS 543 (609)
Q Consensus 483 asggGs~Dg------~I~iwd~~t~~-----~~~~~~-~-----~--~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~ 543 (609)
+.+. .|| .+++||+.... ....+. . . .....+.+-++.++++++++ ..+.|.|+....
T Consensus 257 ~~~~--~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~-~s~dv~vl~~~~ 333 (434)
T 2oit_A 257 VYAA--ADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASA-ASTEVSILARQS 333 (434)
T ss_dssp EEEE--TTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEET-TCSBCEEEEECT
T ss_pred EEcc--CCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecC-CCCceeEEEecC
Confidence 4443 332 49999998642 111111 0 1 12233445577777777643 555566655322
Q ss_pred C---ceEEEEe------------CCCCCEEEEEEe---------------CCCCEEEEEECCCCEEEEEcCCC
Q psy4876 544 L---VKVAELH------------GHSARVLNLAMS---------------PDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 544 ~---~~~~~l~------------~h~~~V~~l~~s---------------pdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
. .....+. +.......+++. |-...|..-+.||.|..|.+...
T Consensus 334 ~~~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~~ 406 (434)
T 2oit_A 334 DQINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMINQ 406 (434)
T ss_dssp TSSCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEEC
T ss_pred CCCccEEEeccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEec
Confidence 1 1011110 011223333332 12357889999999999999873
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-19 Score=184.89 Aligned_cols=244 Identities=9% Similarity=0.054 Sum_probs=191.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeC-------CCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCC-EEEEEecCCeEEEEE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTS-------LGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTY-ILSSGSRCGNIVHHD 403 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~-------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~-~L~sgs~dg~I~iwd 403 (609)
....+..++|+|+|++|++++. ++.|.+||..+++.+..+... ..+..++| +++ ++++...++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 3467889999999999888874 568999999999888877643 34666777 566 455556689999999
Q ss_pred cCCCCeeEEEEccCCC---------CeEEEEEccCCCEEEEEe--CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEE
Q psy4876 404 VRSRDHKVALLQNHTQ---------EVCGLKWSPDGRYLASGG--NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI 472 (609)
Q Consensus 404 ~~~~~~~~~~~~~h~~---------~V~~l~~spdg~~lasgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l 472 (609)
..++. .+..+..+.. .+.+++|+|+|+++++++ .++.|.+||+.++ +.+..+..+...+.++
T Consensus 118 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~~~~~ 190 (353)
T 3vgz_A 118 AKTGE-VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI------KLKTAIQNTGKMSTGL 190 (353)
T ss_dssp TTTCC-EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT------EEEEEECCCCTTCCCC
T ss_pred CCCCe-eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC------ceEEEecCCCCccceE
Confidence 99874 5555554432 278899999999887776 4788999999987 5666666456668899
Q ss_pred EEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC-----CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE
Q psy4876 473 AWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT-----KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKV 547 (609)
Q Consensus 473 ~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~-----~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~ 547 (609)
+|+|++..++++. .++.|.+||+.+++.+..+.. ...+..++|+|++++++++. ..++.|.+||..+++.+
T Consensus 191 ~~s~dg~~l~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~v~~~d~~~~~~~ 266 (353)
T 3vgz_A 191 ALDSEGKRLYTTN---ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITD-SKAAEVLVVDTRNGNIL 266 (353)
T ss_dssp EEETTTTEEEEEC---TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEE-SSSSEEEEEETTTCCEE
T ss_pred EECCCCCEEEEEc---CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEe-CCCCEEEEEECCCCcEE
Confidence 9999997666653 589999999999998887764 23578899999999887764 35799999999999988
Q ss_pred EEEeCCCCCEEEEEEeCCCCEEEEEE-CCCCEEEEEcCCCccchh
Q psy4876 548 AELHGHSARVLNLAMSPDETTVLSAG-ADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 548 ~~l~~h~~~V~~l~~spdg~~L~s~s-~Dg~I~iWdl~~~~~~~k 591 (609)
..+..+.. .+++|+|+|++++.++ .++.|.+||+.+++....
T Consensus 267 ~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~ 309 (353)
T 3vgz_A 267 AKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT 309 (353)
T ss_dssp EEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence 88765432 5799999999766665 689999999988765443
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.8e-20 Score=216.97 Aligned_cols=202 Identities=8% Similarity=-0.029 Sum_probs=146.7
Q ss_pred EecCCCCceEEEEecCC-EEEEEecCCeEEEEEcCCCCeeEEEEccC---------------------------------
Q psy4876 372 TMDGHDVRVGALAWNTY-ILSSGSRCGNIVHHDVRSRDHKVALLQNH--------------------------------- 417 (609)
Q Consensus 372 ~l~~h~~~V~~l~~~~~-~L~sgs~dg~I~iwd~~~~~~~~~~~~~h--------------------------------- 417 (609)
.+.+|...+.++.|+++ ++++++.+|.+.+|.+.........+..|
T Consensus 198 ~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l 277 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKI 277 (1045)
T ss_dssp EEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCE
T ss_pred ECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEe
Confidence 34567777888888654 45566777888888764321122222222
Q ss_pred -----------------CCCeEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcc-cEEEEEEcCCC
Q psy4876 418 -----------------TQEVCGLKWS-PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA-AVKAIAWCPWS 478 (609)
Q Consensus 418 -----------------~~~V~~l~~s-pdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~ 478 (609)
...+.+++|+ |||++|++++ ++.|++|++..+ . ...+..|.. .+..++|+ ++
T Consensus 278 ~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~------~-~~~~~~~~~~~~~~~~~s-dg 348 (1045)
T 1k32_A 278 EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT------Y-VLKVPEPLRIRYVRRGGD-TK 348 (1045)
T ss_dssp EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS------B-EEECSCCSCEEEEEECSS-SE
T ss_pred eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC------c-eEEccCCCcceEEeeeEc-CC
Confidence 1245667777 7777666666 566777776654 2 334556666 88999999 88
Q ss_pred CcEEEEEeccCCCeEE-EEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCE
Q psy4876 479 PNVLASGGGTADRHIY-FWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARV 557 (609)
Q Consensus 479 ~~llasggGs~Dg~I~-iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V 557 (609)
..+++.+ .+..+. +||+.+++......+...+..++|+|+|++|++++ .++.|++||+.+++....+.+|...|
T Consensus 349 ~~l~~~s---~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~--~~~~v~~~d~~tg~~~~~~~~~~~~v 423 (1045)
T 1k32_A 349 VAFIHGT---REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN--DRFEIMTVDLETGKPTVIERSREAMI 423 (1045)
T ss_dssp EEEEEEE---TTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE--TTSEEEEEETTTCCEEEEEECSSSCC
T ss_pred CeEEEEE---CCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEEC--CCCeEEEEECCCCceEEeccCCCCCc
Confidence 6655543 478888 99998877654443346899999999999999854 78999999999999888877899999
Q ss_pred EEEEEeCCCCEEEEEECCC----------CEEEEEcCCCc
Q psy4876 558 LNLAMSPDETTVLSAGADE----------TLRLWKIFEKV 587 (609)
Q Consensus 558 ~~l~~spdg~~L~s~s~Dg----------~I~iWdl~~~~ 587 (609)
.+++|+|||++|++++.++ .|++||+.++.
T Consensus 424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 9999999999999887754 89999998765
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-20 Score=210.64 Aligned_cols=239 Identities=13% Similarity=0.109 Sum_probs=173.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCC-----CC
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRS-----RD 408 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~-----~~ 408 (609)
..|.+++|+|| ..++++. ++.|++||+.+++.... ..+...+.+++| +++.|+++ .++.|++||+.+ +.
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 57999999999 6666664 49999999998766544 446777888899 57888885 689999999987 53
Q ss_pred eeEEEEccCCCC--------------eEEEEEccCCCEEEEEe---------------------------------CCCc
Q psy4876 409 HKVALLQNHTQE--------------VCGLKWSPDGRYLASGG---------------------------------NDNL 441 (609)
Q Consensus 409 ~~~~~~~~h~~~--------------V~~l~~spdg~~lasgs---------------------------------~Dg~ 441 (609)
.......+... +.+++|+|||++|++++ .+..
T Consensus 158 -~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 158 -AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp -CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred -cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 33333333332 48899999999999987 4467
Q ss_pred EEEEeCCCCCCCCCccceEee--cCCcccEEEEEEcCCCCcEEEEEe--ccCCCeEEEEECCCCceeEEEc---CCC---
Q psy4876 442 LNIWSGVPGQHTFSTQPIHSL--SRHQAAVKAIAWCPWSPNVLASGG--GTADRHIYFWNVSSGACLDSID---TKS--- 511 (609)
Q Consensus 442 I~iwd~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~llasgg--Gs~Dg~I~iwd~~t~~~~~~~~---~~~--- 511 (609)
|++||+.++ ...... ..|...+.+++|+|+|..++++.. +.....|++||+.+++....+. ...
T Consensus 237 l~~~d~~~~------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~ 310 (706)
T 2z3z_A 237 VGIYHLATG------KTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVE 310 (706)
T ss_dssp EEEEETTTT------EEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCC
T ss_pred EEEEECCCC------ceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeEC
Confidence 999999877 322222 246678999999999976666542 0011389999999984433332 111
Q ss_pred CeEEEEEcC--CCCeEEEEEecCCCeEEEEECC-CCceEEEEeCCCCCEEE-EEEeCCCCEEEEEECC-C----CEEEEE
Q psy4876 512 QVCALLWNS--DYKELVSAHGFAQNQLIIWKYP-SLVKVAELHGHSARVLN-LAMSPDETTVLSAGAD-E----TLRLWK 582 (609)
Q Consensus 512 ~v~sl~~s~--~g~~l~~~sG~~dg~I~Iwd~~-~~~~~~~l~~h~~~V~~-l~~spdg~~L~s~s~D-g----~I~iWd 582 (609)
.+..+.|+| +|+++++ +..++.++||++. ++..+..+..|...+.. ++|+|||+.|+.++.+ + .|..||
T Consensus 311 ~~~~~~~sp~~dg~~l~~--~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQFIWQ--SRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp CCSCCEECTTCSSEEEEE--ECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred ccCCceeecCCCCEEEEE--EccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 246789999 9997776 4478888999876 67777888888878877 7999999988766654 3 566666
Q ss_pred cCCCc
Q psy4876 583 IFEKV 587 (609)
Q Consensus 583 l~~~~ 587 (609)
+.++.
T Consensus 389 ~~~~~ 393 (706)
T 2z3z_A 389 IKGGK 393 (706)
T ss_dssp TTCCC
T ss_pred cCCCC
Confidence 65543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-19 Score=182.55 Aligned_cols=236 Identities=12% Similarity=0.124 Sum_probs=179.6
Q ss_pred EEEccCCCE-EEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEec-CCeEEEEEcCCCCeeEEEEcc
Q psy4876 341 VAWIQEGYM-LGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSR-CGNIVHHDVRSRDHKVALLQN 416 (609)
Q Consensus 341 v~~spdg~~-Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~-dg~I~iwd~~~~~~~~~~~~~ 416 (609)
..|.+++.+ ++++..++.|.+||+.+++.+..+..+...+ .++| +++.+++++. ++.|.+||+.++......+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345565554 6677788999999999999988887776667 8999 5665655554 899999999987532666666
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCC---cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCe-
Q psy4876 417 HTQEVCGLKWSPDGRYLASGGNDN---LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH- 492 (609)
Q Consensus 417 h~~~V~~l~~spdg~~lasgs~Dg---~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~- 492 (609)
+.....+++|+|+|++|+++..++ .|.+||+.++ +.+..+.. .....+++|+|+++.+++++. .++.
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~------~~~~~~~~-~~~~~~~~~spdg~~l~~~~~--~~~~~ 152 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN------KFISTIPI-PYDAVGIAISPNGNGLILIDR--SSANT 152 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT------EEEEEEEC-CTTEEEEEECTTSSCEEEEEE--TTTTE
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC------CeEEEEEC-CCCccceEECCCCCEEEEEec--CCCce
Confidence 666665599999999999655553 8999999887 55555554 345689999999988887764 5577
Q ss_pred EEEEECCCCcee-----EEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce---EEEEeCCCCCEEEEEEeC
Q psy4876 493 IYFWNVSSGACL-----DSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK---VAELHGHSARVLNLAMSP 564 (609)
Q Consensus 493 I~iwd~~t~~~~-----~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~---~~~l~~h~~~V~~l~~sp 564 (609)
|.+|++.....+ ..+.....+..++|+|+|++++++. ..++.|.+||+.+++. +..+..+ ..+.+++|+|
T Consensus 153 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~-~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~sp 230 (331)
T 3u4y_A 153 VRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVAN-LIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSR 230 (331)
T ss_dssp EEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEE-TTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECT
T ss_pred EEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEe-CCCCeEEEEECCCCcccceeeeccCC-CCCceEEECC
Confidence 999999854432 3334456789999999999887763 4689999999999887 7777644 6678999999
Q ss_pred CCCEEEEEE-CCCCEEEEEcCCCcc
Q psy4876 565 DETTVLSAG-ADETLRLWKIFEKVK 588 (609)
Q Consensus 565 dg~~L~s~s-~Dg~I~iWdl~~~~~ 588 (609)
||++|+.++ .++.|.+||+.+++.
T Consensus 231 dg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 231 DGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp TSSEEEEECSSEEEEEEEETTTTEE
T ss_pred CCCEEEEEEcCCCEEEEEECCCCce
Confidence 999776655 578899999988765
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-19 Score=214.22 Aligned_cols=272 Identities=13% Similarity=0.034 Sum_probs=209.6
Q ss_pred eEEEEEec-CCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCC-CeEEEEEccCC
Q psy4876 271 YLNLIDWS-HFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNE-NVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~ws-p~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~-~V~~v~~spdg 347 (609)
.+..++|| |++ .++.+.++.|++|++.. +....+. .+.. .+.+++|+ +|
T Consensus 297 ~v~~~~~S~pdG~~la~~~~~~i~~~~~~~-------------------------~~~~~~~--~~~~~~~~~~~~s-dg 348 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVSRGQAFIQDVSG-------------------------TYVLKVP--EPLRIRYVRRGGD-TK 348 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEETTEEEEECTTS-------------------------SBEEECS--CCSCEEEEEECSS-SE
T ss_pred ccceeeecCCCCCEEEEEEcCEEEEEcCCC-------------------------CceEEcc--CCCcceEEeeeEc-CC
Confidence 46789999 997 56666699999999987 5433321 2555 89999999 99
Q ss_pred CEEEEEeCCCeEE-EEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEE
Q psy4876 348 YMLGVGTSLGTVQ-LWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGL 424 (609)
Q Consensus 348 ~~Lasgs~dg~I~-iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 424 (609)
+.|++++.++.|. +||+.+++.. .+.+|...+..++| +++.|++++.++.|++||+.++. ......+|...+.++
T Consensus 349 ~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~-~~~~~~~~~~~v~~~ 426 (1045)
T 1k32_A 349 VAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIERSREAMITDF 426 (1045)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCCE
T ss_pred CeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc-eEEeccCCCCCccce
Confidence 9999999888898 9999876654 44488889999999 58999999999999999999874 555666899999999
Q ss_pred EEccCCCEEEEEeCCC----------cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEE
Q psy4876 425 KWSPDGRYLASGGNDN----------LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIY 494 (609)
Q Consensus 425 ~~spdg~~lasgs~Dg----------~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~ 494 (609)
+|+|||++|++++.++ .|++||+.++ + +..+..|...+..++|+|+|..+++.+ .++...
T Consensus 427 ~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g------~-~~~l~~~~~~~~~~~~spdG~~l~~~s---~~~~~~ 496 (1045)
T 1k32_A 427 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR------K-IFAATTENSHDYAPAFDADSKNLYYLS---YRSLDP 496 (1045)
T ss_dssp EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT------E-EEECSCSSSBEEEEEECTTSCEEEEEE---SCCCCC
T ss_pred EECCCCCeEEEEecCccccccCCCCCeEEEEECCCC------c-EEEeeCCCcccCCceEcCCCCEEEEEe---cccCCc
Confidence 9999999999887654 8999999876 4 667778888899999999998666554 445445
Q ss_pred EEECCCCc-------------------------------------------eeEEEcCC-CCeEEEEEcCCCCeEEEE--
Q psy4876 495 FWNVSSGA-------------------------------------------CLDSIDTK-SQVCALLWNSDYKELVSA-- 528 (609)
Q Consensus 495 iwd~~t~~-------------------------------------------~~~~~~~~-~~v~sl~~s~~g~~l~~~-- 528 (609)
+|+..... .+..+..+ ..+..+.+++++..+++.
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~ 576 (1045)
T 1k32_A 497 SPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPV 576 (1045)
T ss_dssp EECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCC
T ss_pred CcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecc
Confidence 55432211 11222222 467899999999877751
Q ss_pred ---------EecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 529 ---------HGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 529 ---------sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
.......|.+||+.+++... +. ..+..++|+|||++|++++.| .|++||+.+++
T Consensus 577 ~g~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 577 HGEFAAYYQGAPEKGVLLKYDVKTRKVTE-VK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CCSHHHHHHCCCCCEEEEEEETTTCCEEE-EE---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred cCcccccccccCCCceEEEEECCCCcEEE-ee---cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 11235678999998877533 33 568899999999999999876 89999998766
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-19 Score=188.24 Aligned_cols=281 Identities=12% Similarity=0.099 Sum_probs=194.8
Q ss_pred eEEEEEecCCC--eEEEEc-CC--eEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEcc
Q psy4876 271 YLNLIDWSHFN--VLAVAL-GG--SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQ 345 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~-dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~sp 345 (609)
|+...+||||+ ++.++. ++ .|++||+.+ +....+... +...+.+++|+|
T Consensus 37 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-------------------------g~~~~lt~~-~~~~~~~~~~sp 90 (388)
T 3pe7_A 37 YFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNT-------------------------QVATQLTEG-RGDNTFGGFLSP 90 (388)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTT-------------------------CEEEECCCS-SCBCSSSCEECT
T ss_pred hhcCccCCCCCCEEEEEEcCCCCceEEEEeCCC-------------------------CceEEeeeC-CCCCccceEEcC
Confidence 44457899997 444555 45 488999887 655544332 444455678999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe----cCCEEEEE----------------------ecCCeE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW----NTYILSSG----------------------SRCGNI 399 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~----~~~~L~sg----------------------s~dg~I 399 (609)
||+.|+.+..++.|.+||+.+++....+..+...+....| ++..++.. ..++.|
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (388)
T 3pe7_A 91 DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL 170 (388)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence 9999999999999999999999877777767666655554 46666642 234679
Q ss_pred EEEEcCCCCeeEEEEccCCCCeEEEEEcc-CCCEEEEEeCC------CcEEEEeCCCCCCCCCccceEeecCCc--ccEE
Q psy4876 400 VHHDVRSRDHKVALLQNHTQEVCGLKWSP-DGRYLASGGND------NLLNIWSGVPGQHTFSTQPIHSLSRHQ--AAVK 470 (609)
Q Consensus 400 ~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~D------g~I~iwd~~~~~~~~~~~~~~~~~~h~--~~V~ 470 (609)
.+||+.++. ...+..+...+..++|+| ||+.|+.+..+ ..|+++|+..+ ....+..+. ..+.
T Consensus 171 ~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-------~~~~l~~~~~~~~~~ 241 (388)
T 3pe7_A 171 MRVDLKTGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT-------NMRKVKTHAEGESCT 241 (388)
T ss_dssp EEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC-------CCEESCCCCTTEEEE
T ss_pred EEEECCCCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC-------ceEEeeeCCCCcccc
Confidence 999999874 444555677899999999 99999887763 37888888755 233444444 3578
Q ss_pred EEEEcCCCCcEEEEEeccC--CCeEEEEECCCCceeEEEcCCC------CeEEEEEcCCCCeEEEEEe-------cCCCe
Q psy4876 471 AIAWCPWSPNVLASGGGTA--DRHIYFWNVSSGACLDSIDTKS------QVCALLWNSDYKELVSAHG-------FAQNQ 535 (609)
Q Consensus 471 ~l~~sp~~~~llasggGs~--Dg~I~iwd~~t~~~~~~~~~~~------~v~sl~~s~~g~~l~~~sG-------~~dg~ 535 (609)
.++|+|+|..+++.+.... +..|++||+.+++......... ....+.|+|+|+.|++... ..+..
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 321 (388)
T 3pe7_A 242 HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPF 321 (388)
T ss_dssp EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCE
T ss_pred cceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCE
Confidence 8999999987766543111 2349999999987543222111 0122379999999886431 35678
Q ss_pred EEEEECCCCceEEEEeCCCC-----------CEEEEEEeCCCCEEEEEE-CCCCEEEEEcCCCc
Q psy4876 536 LIIWKYPSLVKVAELHGHSA-----------RVLNLAMSPDETTVLSAG-ADETLRLWKIFEKV 587 (609)
Q Consensus 536 I~Iwd~~~~~~~~~l~~h~~-----------~V~~l~~spdg~~L~s~s-~Dg~I~iWdl~~~~ 587 (609)
|++||+.+++. ..+..|.. .+.+++|+|||+.|+.++ .+|...||.+.-..
T Consensus 322 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 322 LYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp EEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred EEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 99999988765 45555655 578899999999887665 47888888775443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=212.32 Aligned_cols=280 Identities=11% Similarity=0.109 Sum_probs=195.6
Q ss_pred EEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec--CCCCeEEEEEccCCCEE
Q psy4876 274 LIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE--GNENVCSVAWIQEGYML 350 (609)
Q Consensus 274 ~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--h~~~V~~v~~spdg~~L 350 (609)
.++|+|++ +++.+.|+.|++||+.+ +....+.... ....|.+++|||||++|
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~-------------------------g~~~~~~~~~~~~~~~~~~~~~SpDg~~l 74 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIET-------------------------GQSYTILSNRTMKSVNASNYGLSPDRQFV 74 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSS-------------------------CCEEEEECHHHHHTTTCSEEEECTTSSEE
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCC-------------------------CcEEEEEccccccccceeeEEECCCCCeE
Confidence 47899997 66667799999999988 6655444321 11248999999999999
Q ss_pred EEEeC---------CCeEEEEeCCCCeeE--EEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccC
Q psy4876 351 GVGTS---------LGTVQLWDVSAKKKC--RTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNH 417 (609)
Q Consensus 351 asgs~---------dg~I~iwd~~~~~~~--~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h 417 (609)
|+++. ++.|++||+.+++.+ ..+ ...+..++| +|+.|+.+. ++.|++||+.++........++
T Consensus 75 a~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~ 150 (719)
T 1z68_A 75 YLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGR 150 (719)
T ss_dssp EEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCB
T ss_pred EEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCC
Confidence 98876 789999999988762 222 246788899 678888875 7899999998764322112233
Q ss_pred CCCe-----------------EEEEEccCCCEEEEEeCCC----------------------------------cEEEEe
Q psy4876 418 TQEV-----------------CGLKWSPDGRYLASGGNDN----------------------------------LLNIWS 446 (609)
Q Consensus 418 ~~~V-----------------~~l~~spdg~~lasgs~Dg----------------------------------~I~iwd 446 (609)
...| .+++|||||++||+++.|. .|++||
T Consensus 151 ~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d 230 (719)
T 1z68_A 151 ENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID 230 (719)
T ss_dssp TTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred cCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence 3222 4899999999999988652 788999
Q ss_pred CCCCCCC--CCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC--CCeEEEEE----CCCCceeEEE----cC-CCCe
Q psy4876 447 GVPGQHT--FSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA--DRHIYFWN----VSSGACLDSI----DT-KSQV 513 (609)
Q Consensus 447 ~~~~~~~--~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~--Dg~I~iwd----~~t~~~~~~~----~~-~~~v 513 (609)
+.++... ........+.+|...+..++|+||+ .++++..... ...|.+|| +.++++...+ .. ...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~ 309 (719)
T 1z68_A 231 TTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWA 309 (719)
T ss_dssp SSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCS
T ss_pred CCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceE
Confidence 9876210 0000002234688889999999996 5666532112 24588999 8877765444 22 2345
Q ss_pred E-----EEEEcCCCCeEEEEEecCCC--eEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECC-----CCEEEE
Q psy4876 514 C-----ALLWNSDYKELVSAHGFAQN--QLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGAD-----ETLRLW 581 (609)
Q Consensus 514 ~-----sl~~s~~g~~l~~~sG~~dg--~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D-----g~I~iW 581 (609)
. .+.|+|+|+.++......++ .|.+||+.+++ ...+..+...|..+.++ +++.|+..+.+ +.+++|
T Consensus 310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~ 387 (719)
T 1z68_A 310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIY 387 (719)
T ss_dssp SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEE
T ss_pred ccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEE
Confidence 4 78999999987765443444 57777877666 45566666678888888 88888777665 889999
Q ss_pred EcCC
Q psy4876 582 KIFE 585 (609)
Q Consensus 582 dl~~ 585 (609)
.+..
T Consensus 388 ~~~~ 391 (719)
T 1z68_A 388 RISI 391 (719)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8864
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.3e-20 Score=208.86 Aligned_cols=269 Identities=11% Similarity=0.034 Sum_probs=190.8
Q ss_pred eEEEEEecCCC-eEE-EEcC---------CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCe
Q psy4876 271 YLNLIDWSHFN-VLA-VALG---------GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENV 338 (609)
Q Consensus 271 ~v~~l~wsp~~-lla-~s~d---------g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V 338 (609)
.|..++||||+ .|+ ++.+ +.|++||+.+ +....+.... +...+
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~-------------------------~~~~~l~~~~~~~~~~ 116 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH-------------------------GDPQSLDPPEVSNAKL 116 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS-------------------------CCCEECCCTTCCSCCC
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCC-------------------------CceEeccCCccccccc
Confidence 46789999997 444 4443 7899999988 5554444433 45568
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCce------------------EEEEe--cCCEEEEEecCC-
Q psy4876 339 CSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRV------------------GALAW--NTYILSSGSRCG- 397 (609)
Q Consensus 339 ~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V------------------~~l~~--~~~~L~sgs~dg- 397 (609)
.+++|+|||++||+++. +.|++||+.+++.......+...+ .+++| +++.|++++.++
T Consensus 117 ~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~ 195 (723)
T 1xfd_A 117 QYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDS 195 (723)
T ss_dssp SBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECT
T ss_pred cccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCC
Confidence 99999999999999887 799999999988777766544433 78999 578888887543
Q ss_pred ---------------------------------eEEEEEcCCCCeeEEEEccC------CCCeEEEEEccCCCEEEEEeC
Q psy4876 398 ---------------------------------NIVHHDVRSRDHKVALLQNH------TQEVCGLKWSPDGRYLASGGN 438 (609)
Q Consensus 398 ---------------------------------~I~iwd~~~~~~~~~~~~~h------~~~V~~l~~spdg~~lasgs~ 438 (609)
.|++||+.++. ....+..+ ...+..++|+|||++|++...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~ 274 (723)
T 1xfd_A 196 RVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT-HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLN 274 (723)
T ss_dssp TSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC-CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEE
T ss_pred ccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc-eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEc
Confidence 79999998764 33444443 567899999999998877653
Q ss_pred ----CCcEEEEeCCCCCCCCCccceEeecC-CcccE----EEEEEcCCCCcEEEEEeccCCC------eEEEEE-CCCCc
Q psy4876 439 ----DNLLNIWSGVPGQHTFSTQPIHSLSR-HQAAV----KAIAWCPWSPNVLASGGGTADR------HIYFWN-VSSGA 502 (609)
Q Consensus 439 ----Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V----~~l~~sp~~~~llasggGs~Dg------~I~iwd-~~t~~ 502 (609)
+..|++||+.++ +....+.. +...+ ..++|+|+|+.+++.++ ..++ .|++|| ...+.
T Consensus 275 ~~~~~~~i~~~d~~~g------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~-~~~~~~~~~~~l~~~d~~~~~~ 347 (723)
T 1xfd_A 275 RAQNVSILTLCDATTG------VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA-IPQGGRGKFYHITVSSSQPNSS 347 (723)
T ss_dssp TTSCEEEEEEEETTTC------CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE-ECCSSSSCEEEEEEECSSCCSS
T ss_pred CCCCeEEEEEEeCCCC------cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEe-cccCCCcceeEEEEEeccCCCC
Confidence 357999999887 33333322 33333 37899999988776522 3566 677788 44444
Q ss_pred --eeEEEc-CCCCeEE-EEEcCCCCeEEEEEecCC--CeEEEEECCCCc--eEEEEeC---CCCCEEEEEEeCCCCEEEE
Q psy4876 503 --CLDSID-TKSQVCA-LLWNSDYKELVSAHGFAQ--NQLIIWKYPSLV--KVAELHG---HSARVLNLAMSPDETTVLS 571 (609)
Q Consensus 503 --~~~~~~-~~~~v~s-l~~s~~g~~l~~~sG~~d--g~I~Iwd~~~~~--~~~~l~~---h~~~V~~l~~spdg~~L~s 571 (609)
+...+. .+..+.. ++|+|+|+.|++.+. .+ +.++||++.... ....+.. |...+..++|+|||++|+.
T Consensus 348 ~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~-~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~ 426 (723)
T 1xfd_A 348 NDNIQSITSGDWDVTKILAYDEKGNKIYFLST-EDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLL 426 (723)
T ss_dssp SCCCCBSCCSSSCEEEEEEEETTTTEEEEEES-SSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred ccceeEeecCCeEEEeeeEEcCCCCEEEEEEc-CCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEE
Confidence 144444 3345555 699999999987643 44 789999886432 3334443 6677899999999998876
Q ss_pred EEC
Q psy4876 572 AGA 574 (609)
Q Consensus 572 ~s~ 574 (609)
...
T Consensus 427 ~~~ 429 (723)
T 1xfd_A 427 KCE 429 (723)
T ss_dssp ECC
T ss_pred Ecc
Confidence 543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-19 Score=179.94 Aligned_cols=222 Identities=14% Similarity=0.115 Sum_probs=169.7
Q ss_pred EeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCC-CCeeEEEEccC-CCCeEEEEEcc
Q psy4876 353 GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRS-RDHKVALLQNH-TQEVCGLKWSP 428 (609)
Q Consensus 353 gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~-~~~~~~~~~~h-~~~V~~l~~sp 428 (609)
++.++.|++||+.+++... +..|...|.+++| ++.+|++++ ++.|.+||+.+ +. .......| ...+.+++|+|
T Consensus 18 ~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-PEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-CEECCCTTCCCBCSCCEECT
T ss_pred CCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-ceEeccccccccccceEECC
Confidence 4578899999999887664 4458899999999 578888876 78999999998 64 44444455 46789999999
Q ss_pred CCCEEEEEeC--CCc--EEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEEC--CCCc
Q psy4876 429 DGRYLASGGN--DNL--LNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV--SSGA 502 (609)
Q Consensus 429 dg~~lasgs~--Dg~--I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~--~t~~ 502 (609)
+|++|++++. ++. |++|++..+ ....+..+. .+..++|+|++..+++++. .++.+++|++ .++.
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~-~~~~~~~spdg~~l~~~~~--~~~~~~l~~~~~~~~~ 164 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGG-------TPRLMTKNL-PSYWHGWSPDGKSFTYCGI--RDQVFDIYSMDIDSGV 164 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCC-------CCEECCSSS-SEEEEEECTTSSEEEEEEE--ETTEEEEEEEETTTCC
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCC-------ceEEeecCC-CccceEECCCCCEEEEEEC--CCCceEEEEEECCCCc
Confidence 9999999983 344 445555544 233444333 4889999999987776663 6888888885 4454
Q ss_pred eeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC-CCceEEEEeCCCCCEEEEEEeCCCCEEEEEECC------
Q psy4876 503 CLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYP-SLVKVAELHGHSARVLNLAMSPDETTVLSAGAD------ 575 (609)
Q Consensus 503 ~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~-~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D------ 575 (609)
..........+.++.|+|+++.+++++ ..++.+.||++. .+..+..+..|...+.+++|+|+|++|++++.+
T Consensus 165 ~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 243 (297)
T 2ojh_A 165 ETRLTHGEGRNDGPDYSPDGRWIYFNS-SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDH 243 (297)
T ss_dssp EEECCCSSSCEEEEEECTTSSEEEEEE-CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred ceEcccCCCccccceECCCCCEEEEEe-cCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcc
Confidence 443334456899999999999988764 357889999886 566677788888889999999999999988876
Q ss_pred -----CCEEEEEcCCCcc
Q psy4876 576 -----ETLRLWKIFEKVK 588 (609)
Q Consensus 576 -----g~I~iWdl~~~~~ 588 (609)
+.|.+||+.+++.
T Consensus 244 ~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 244 PRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp CSSEEEEEEEEETTSCSC
T ss_pred cccCceEEEEEecCCCCc
Confidence 5699999987654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-19 Score=183.95 Aligned_cols=237 Identities=14% Similarity=0.129 Sum_probs=181.0
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCC-CceEEEEe--cCCEE-EEEecCCeEEEEEcCCCCeeEEEEc
Q psy4876 340 SVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHD-VRVGALAW--NTYIL-SSGSRCGNIVHHDVRSRDHKVALLQ 415 (609)
Q Consensus 340 ~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~--~~~~L-~sgs~dg~I~iwd~~~~~~~~~~~~ 415 (609)
.+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++| +++.+ +++..++.|.+||+.++. .+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~-~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK-NTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc-EEEEEE
Confidence 45678888999999999999999999999888887543 25677888 46654 555678999999998863 444444
Q ss_pred c-C-----CCCeEEEEEccCCCEEEEEeCC------------CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCC
Q psy4876 416 N-H-----TQEVCGLKWSPDGRYLASGGND------------NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW 477 (609)
Q Consensus 416 ~-h-----~~~V~~l~~spdg~~lasgs~D------------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 477 (609)
. + ...+.+++|+|||++|++++.+ +.|.+||+.++... ..+..+. +...+.+++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~-~~~~~~~~~~s~d 158 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA---KPVRTFP-MPRQVYLMRAADD 158 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB---CCSEEEE-CCSSCCCEEECTT
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc---ceeeecc-CCCcccceeECCC
Confidence 2 2 2337889999999999998865 89999999875211 2333333 3346889999999
Q ss_pred CCcEEEEEeccCCCeEEEEECCCCceeEEEcCCC----------------------------------------------
Q psy4876 478 SPNVLASGGGTADRHIYFWNVSSGACLDSIDTKS---------------------------------------------- 511 (609)
Q Consensus 478 ~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~---------------------------------------------- 511 (609)
+. +++. ++.|.+||+.+++.+..+....
T Consensus 159 g~-l~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 232 (349)
T 1jmx_B 159 GS-LYVA-----GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL 232 (349)
T ss_dssp SC-EEEE-----SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred Cc-EEEc-----cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccc
Confidence 97 6663 2339999999998877665331
Q ss_pred -----------------------CeEEEEEcC-CCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCC
Q psy4876 512 -----------------------QVCALLWNS-DYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET 567 (609)
Q Consensus 512 -----------------------~v~sl~~s~-~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 567 (609)
.+..++|+| ++++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|||+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~----~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~ 307 (349)
T 1jmx_B 233 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV----LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGD 307 (349)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE----ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSS
T ss_pred eeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE----cCeEEEEECccCeEEEEEcCC-CCccceEECCCCC
Confidence 244667789 99998884 789999999999988877643 4578999999999
Q ss_pred EEEEEECCCCEEEEEcCCCccchhh
Q psy4876 568 TVLSAGADETLRLWKIFEKVKSKKK 592 (609)
Q Consensus 568 ~L~s~s~Dg~I~iWdl~~~~~~~k~ 592 (609)
+|++++.++.|++||+.+.+.....
T Consensus 308 ~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 308 KLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp CEEEESBSSEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCeEEEEeccccceeeee
Confidence 9988888999999999887755443
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-19 Score=200.19 Aligned_cols=264 Identities=11% Similarity=0.015 Sum_probs=185.8
Q ss_pred eEEEEEecCCC--eEEEEc-CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHFN--VLAVAL-GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~-dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
.|.+++|+||| ++.++. ||++.||++.+ +....+... +...+.+++|+||
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~-------------------------g~~~~lt~~-~~~~~~~~~~spd- 75 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDG-------------------------GETVKLNRE-PINSVLDPHYGVG- 75 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEET-------------------------TEEEECCSS-CCSEECEECTTCS-
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcC-------------------------CCcEeeecc-cccccccccCCCC-
Confidence 48899999997 444555 99999999865 544433321 3368999999999
Q ss_pred CEEEEEeC---CCeEEEEeCCC---CeeEEEec-CCCCceEEEEecCC-EEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 348 YMLGVGTS---LGTVQLWDVSA---KKKCRTMD-GHDVRVGALAWNTY-ILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 348 ~~Lasgs~---dg~I~iwd~~~---~~~~~~l~-~h~~~V~~l~~~~~-~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
+.++++.. +....||.+.. +... .+. .+...+.+++++++ .+++.+.++.+.+||+.++. ...... +..
T Consensus 76 ~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~-~~~l~~-~~~ 152 (582)
T 3o4h_A 76 RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG-LRELAR-LPG 152 (582)
T ss_dssp EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE-EEEEEE-ESS
T ss_pred eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc-EEEeec-CCC
Confidence 77777765 44456654432 3333 333 23333555666764 44444455556699998863 333333 333
Q ss_pred CeEEEEEccCCCEEEEEeCC----CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC--eE
Q psy4876 420 EVCGLKWSPDGRYLASGGND----NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR--HI 493 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~D----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg--~I 493 (609)
.+++|+|||++|++++.| +.|++||+.++ + ...+..|...+..++|+|||+.++ ++ ..++ .|
T Consensus 153 --~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g------~-~~~l~~~~~~~~~~~~SpDG~~l~-~~--~~~~~~~i 220 (582)
T 3o4h_A 153 --FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSG------G-LRVFDSGEGSFSSASISPGMKVTA-GL--ETAREARL 220 (582)
T ss_dssp --CEEEEEEETTEEEEEEEEETTEEEEEEEETTTC------C-CEEECCSSCEEEEEEECTTSCEEE-EE--ECSSCEEE
T ss_pred --ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCC------C-ceEeecCCCccccceECCCCCEEE-Ec--cCCCeeEE
Confidence 789999999999988877 78999999887 3 346778888999999999997666 44 3577 89
Q ss_pred EEEECCCCceeEEEcCC-CCeEEEE--------EcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeC
Q psy4876 494 YFWNVSSGACLDSIDTK-SQVCALL--------WNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP 564 (609)
Q Consensus 494 ~iwd~~t~~~~~~~~~~-~~v~sl~--------~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp 564 (609)
++||+.+++.. .+..+ ..+..+. |+|+|..++++ ..++.++||++ ++.+. .+.+.|.+++|+
T Consensus 221 ~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~--~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s- 291 (582)
T 3o4h_A 221 VTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVA--RREGRSAVFID--GERVE---APQGNHGRVVLW- 291 (582)
T ss_dssp EEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEE--EETTEEEEEET--TEEEC---CCSSEEEEEEEE-
T ss_pred EEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEE--EcCCcEEEEEE--CCeec---cCCCceEEEEec-
Confidence 99999998887 54433 3455555 99999655553 47999999999 65443 345779999999
Q ss_pred CCCEEEEEECCCC---EEEEEcCC
Q psy4876 565 DETTVLSAGADET---LRLWKIFE 585 (609)
Q Consensus 565 dg~~L~s~s~Dg~---I~iWdl~~ 585 (609)
||+++++++.+.+ |.+|+..+
T Consensus 292 dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 292 RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp TTEEEEEEEETTEEEEEEEETTCC
T ss_pred CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 9999999888754 66666543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-18 Score=180.37 Aligned_cols=256 Identities=13% Similarity=0.047 Sum_probs=177.2
Q ss_pred cceeeeeeec--CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCC-CCeeEEEecCC-CCceEEEEe--cCCE--EEEEe-
Q psy4876 324 RAIDHLMDLE--GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVS-AKKKCRTMDGH-DVRVGALAW--NTYI--LSSGS- 394 (609)
Q Consensus 324 ~~~~~l~~~~--h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~-~~~~~~~l~~h-~~~V~~l~~--~~~~--L~sgs- 394 (609)
+.+..+.... ....+..++|+|+|++|++++.+ .|.+|++. +++........ .+.+.+++| +++. ++++.
T Consensus 26 g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~ 104 (365)
T 1jof_A 26 LTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQ 104 (365)
T ss_dssp TEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSS
T ss_pred CCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecC
Confidence 5554444432 33578899999999999998887 99999997 77665433211 122445677 4663 44543
Q ss_pred ------------cCCeEEEEEcCCCCeeEEEEc----cCCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCC-CCCCCCCc
Q psy4876 395 ------------RCGNIVHHDVRSRDHKVALLQ----NHTQEVCGLKWSPDGRYLASGGN-DNLLNIWSGV-PGQHTFST 456 (609)
Q Consensus 395 ------------~dg~I~iwd~~~~~~~~~~~~----~h~~~V~~l~~spdg~~lasgs~-Dg~I~iwd~~-~~~~~~~~ 456 (609)
.+|.+.+|++.........+. .+...+.+++|+|||++|++++. ++.|++||+. +++.
T Consensus 105 ~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~---- 180 (365)
T 1jof_A 105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV---- 180 (365)
T ss_dssp TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE----
T ss_pred CcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE----
Confidence 689999999974333332222 25567999999999998887764 6799999998 5521
Q ss_pred cceEeec--CCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC--CCcee---EEEc---CC----C-------CeEE
Q psy4876 457 QPIHSLS--RHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS--SGACL---DSID---TK----S-------QVCA 515 (609)
Q Consensus 457 ~~~~~~~--~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~--t~~~~---~~~~---~~----~-------~v~s 515 (609)
..+..+. .|...+..++|+|+|+.+++++ ..++.|.+|++. +++.. ..+. .. . .+..
T Consensus 181 ~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~--~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 258 (365)
T 1jof_A 181 ELVGSVDAPDPGDHPRWVAMHPTGNYLYALM--EAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRAD 258 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEE
T ss_pred EEeeeEecCCCCCCCCEeEECCCCCEEEEEE--CCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccccc
Confidence 2223333 2456789999999998776665 357899999865 56643 2222 11 2 4789
Q ss_pred EE-EcCCCCeEEEEEecCC----CeEEEEECC-CCceEE---EEeCCCCCEEEEEEeC---CCCEEEEEECC-CCEEEEE
Q psy4876 516 LL-WNSDYKELVSAHGFAQ----NQLIIWKYP-SLVKVA---ELHGHSARVLNLAMSP---DETTVLSAGAD-ETLRLWK 582 (609)
Q Consensus 516 l~-~s~~g~~l~~~sG~~d----g~I~Iwd~~-~~~~~~---~l~~h~~~V~~l~~sp---dg~~L~s~s~D-g~I~iWd 582 (609)
++ |+|+|++|+++....+ +.|.+|++. +++... .+..+...+..++|+| ||++|++++.+ +.|.+|+
T Consensus 259 i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 259 VCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp EEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred EEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence 99 9999999887643233 289999986 565433 2334555677899999 89999999875 8999999
Q ss_pred cCCC
Q psy4876 583 IFEK 586 (609)
Q Consensus 583 l~~~ 586 (609)
+...
T Consensus 339 ~~~~ 342 (365)
T 1jof_A 339 WKDE 342 (365)
T ss_dssp EETT
T ss_pred Echh
Confidence 9765
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-17 Score=173.32 Aligned_cols=246 Identities=12% Similarity=0.087 Sum_probs=171.9
Q ss_pred EEEEEecCCC-eEEEEc---CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 272 LNLIDWSHFN-VLAVAL---GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 272 v~~l~wsp~~-lla~s~---dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
...++|+|++ +++++. ++.|++|++.+ +....+..+. +...+..++|+|+
T Consensus 42 p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~-------------------------g~~~~~~~~~~~~~~p~~~a~spd 96 (347)
T 3hfq_A 42 PTYLALSAKDCLYSVDKEDDEGGIAAWQIDG-------------------------QTAHKLNTVVAPGTPPAYVAVDEA 96 (347)
T ss_dssp CCCEEECTTCEEEEEEEETTEEEEEEEEEET-------------------------TEEEEEEEEEEESCCCSEEEEETT
T ss_pred cceEEEccCCeEEEEEecCCCceEEEEEecC-------------------------CcEEEeeeeecCCCCCEEEEECCC
Confidence 3459999997 665555 58999999976 6665665544 6778899999999
Q ss_pred CCEEEEEe-CCCeEEEEeCCC-C--eeEEEecC---------CCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 347 GYMLGVGT-SLGTVQLWDVSA-K--KKCRTMDG---------HDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 347 g~~Lasgs-~dg~I~iwd~~~-~--~~~~~l~~---------h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
|++|++++ .++.|.+|++.. + ..+..+.. +...+.+++| +++++++...++.|.+|++.......
T Consensus 97 g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~ 176 (347)
T 3hfq_A 97 RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLS 176 (347)
T ss_dssp TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEE
T ss_pred CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEE
Confidence 99888887 679999999963 2 23333322 1234788999 56766666778899999998322222
Q ss_pred --EEEcc-CCCCeEEEEEccCCCEEEE-EeCCCcEEEEeCCCCCCCCCccceEeecCCc------ccEEEEEEcCCCCcE
Q psy4876 412 --ALLQN-HTQEVCGLKWSPDGRYLAS-GGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQ------AAVKAIAWCPWSPNV 481 (609)
Q Consensus 412 --~~~~~-h~~~V~~l~~spdg~~las-gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~------~~V~~l~~sp~~~~l 481 (609)
..+.. ....+..++|+|||++|++ +..++.|.+|++...... ...+..+.... ..+..++|+|+|+.+
T Consensus 177 ~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l 254 (347)
T 3hfq_A 177 EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA--FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFL 254 (347)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE--EEEEEEEESSCTTCCSCCEEEEEEECTTSCEE
T ss_pred EeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc--eEEeeeeeecCCCCCCCCcceeEEECCCCCEE
Confidence 22222 2346788999999996665 456889999998752110 01222332222 458899999999877
Q ss_pred EEEEeccCCCeEEEEECCC-C--ceeEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEE--ECCCCceE
Q psy4876 482 LASGGGTADRHIYFWNVSS-G--ACLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIW--KYPSLVKV 547 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t-~--~~~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iw--d~~~~~~~ 547 (609)
++++. .++.|.+||+.. + +.+..+.. ...+..++|+|+|++|+++. ..++.|.+| |..+++..
T Consensus 255 ~v~~~--~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~-~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 255 YVSNR--GYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVN-QNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEE--TTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEE-TTTTEEEEEEECTTTCCEE
T ss_pred EEEeC--CCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEE-cCCCcEEEEEEeCCCCeEE
Confidence 77763 689999999973 2 44555554 34688999999999988864 356899999 54556544
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.2e-18 Score=172.83 Aligned_cols=237 Identities=9% Similarity=0.018 Sum_probs=174.6
Q ss_pred EEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEE
Q psy4876 275 IDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGV 352 (609)
Q Consensus 275 l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Las 352 (609)
+++++++ +++++.++.|++||..+ +.............+..++|+|+|+++++
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~-------------------------~~~~~~~~~~~~~~~~~~~~s~dg~~~~v 59 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVAS-------------------------DTVYKSCVMPDKFGPGTAMMAPDNRTAYV 59 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTT-------------------------TEEEEEEECSSCCSSCEEEECTTSSEEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCC-------------------------CcEEEEEecCCCCCCceeEECCCCCEEEE
Confidence 4566665 55677899999999988 55444333322226789999999986654
Q ss_pred -EeCCCeEEEEeCCCCeeEEEecCCC------CceEEEEe--cCCEEEEEecC------------CeEEEEEcCCCC--e
Q psy4876 353 -GTSLGTVQLWDVSAKKKCRTMDGHD------VRVGALAW--NTYILSSGSRC------------GNIVHHDVRSRD--H 409 (609)
Q Consensus 353 -gs~dg~I~iwd~~~~~~~~~l~~h~------~~V~~l~~--~~~~L~sgs~d------------g~I~iwd~~~~~--~ 409 (609)
+..++.|.+||+.+++.+..+..+. ..+..++| ++++|++++.+ +.|.+||+.++. .
T Consensus 60 ~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 139 (349)
T 1jmx_B 60 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK 139 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred EeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccc
Confidence 4568999999999998887776432 23677888 57788888865 899999998742 1
Q ss_pred eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC------------------------
Q psy4876 410 KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH------------------------ 465 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h------------------------ 465 (609)
.+..+. +...+.+++|+|+|+ +++++. .|++||+.+++. +..+..+
T Consensus 140 ~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (349)
T 1jmx_B 140 PVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKY------TVALPLRNWNRKGYSAPDVLYFWPHQSPRHE 209 (349)
T ss_dssp CSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCE------EEEECSTTCCCTTBCCCBCCCCCCCCCTTCE
T ss_pred eeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCce------eccccccccCCccccCccceeeecCCCccee
Confidence 223333 334688999999999 555543 499999987732 2222111
Q ss_pred --------------------------------------------cccEEEEEEcC-CCCcEEEEEeccCCCeEEEEECCC
Q psy4876 466 --------------------------------------------QAAVKAIAWCP-WSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 466 --------------------------------------------~~~V~~l~~sp-~~~~llasggGs~Dg~I~iwd~~t 500 (609)
...+.+++|+| ++..++++ ++.|.+||+.+
T Consensus 210 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~ 284 (349)
T 1jmx_B 210 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQ 284 (349)
T ss_dssp EEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTT
T ss_pred EEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-----cCeEEEEECcc
Confidence 12456778889 88655543 68999999999
Q ss_pred CceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC
Q psy4876 501 GACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH 553 (609)
Q Consensus 501 ~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h 553 (609)
++.+..+.....+.+++|++++++|+++ ..++.|.+||..+++.+..+...
T Consensus 285 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 285 RKLIKAANLDHTYYCVAFDKKGDKLYLG--GTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp TEEEEEEECSSCCCEEEECSSSSCEEEE--SBSSEEEEEETTTTEEEEEEECS
T ss_pred CeEEEEEcCCCCccceEECCCCCEEEEe--cCCCeEEEEeccccceeeeeecC
Confidence 9998888877778899999999999883 46799999999999988887654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-18 Score=174.67 Aligned_cols=240 Identities=12% Similarity=0.035 Sum_probs=179.5
Q ss_pred EEEEEecCCC--eEEE-EcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecC----CCCeEEEEEc
Q psy4876 272 LNLIDWSHFN--VLAV-ALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEG----NENVCSVAWI 344 (609)
Q Consensus 272 v~~l~wsp~~--lla~-s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h----~~~V~~v~~s 344 (609)
+..++|+|++ ++++ ..++.|++||+.+ +.......+.+ ...+.+++|+
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~s 90 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVT-------------------------GETLGRIDLSTPEERVKSLFGAALS 90 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTT-------------------------CCEEEEEECCBTTEEEECTTCEEEC
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCC-------------------------CCeEeeEEcCCcccccccccceEEC
Confidence 4568999987 3333 3468999999987 54433333222 1267789999
Q ss_pred cCCCEEEEEe------------CCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCee
Q psy4876 345 QEGYMLGVGT------------SLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 345 pdg~~Lasgs------------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
|+|++|+++. .++.|.+||+.+++.+..+.. ...+.+++| +++.|+++ ++.|.+||+.++ ..
T Consensus 91 ~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~-~~ 166 (337)
T 1pby_B 91 PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAG-TL 166 (337)
T ss_dssp TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTT-EE
T ss_pred CCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCC-cE
Confidence 9999999886 579999999999888877764 455777888 56767776 689999999987 35
Q ss_pred EEEEccCCCCeEEEEEccCCCEEEEEeCCC------------------------cEEEEeCCCCCCCCCccceEeecCCc
Q psy4876 411 VALLQNHTQEVCGLKWSPDGRYLASGGNDN------------------------LLNIWSGVPGQHTFSTQPIHSLSRHQ 466 (609)
Q Consensus 411 ~~~~~~h~~~V~~l~~spdg~~lasgs~Dg------------------------~I~iwd~~~~~~~~~~~~~~~~~~h~ 466 (609)
...+..+.. ...+.|+|+|.+++..+.++ .|.+||+.+++. . ...+..+.
T Consensus 167 ~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~----~-~~~~~~~~ 240 (337)
T 1pby_B 167 VEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM----A-MREVRIMD 240 (337)
T ss_dssp EEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE----E-EEEEEECS
T ss_pred eeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc----e-EeecCCCC
Confidence 555554331 11337899998765554332 468999988732 1 33344566
Q ss_pred ccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce
Q psy4876 467 AAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK 546 (609)
Q Consensus 467 ~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~ 546 (609)
..+.+++|+|++..++++ ++.|++||+.+++.+..+.....+.+++|+|++++++++ ..++.|.+||+.+++.
T Consensus 241 ~~~~~~~~s~dg~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 241 VFYFSTAVNPAKTRAFGA-----YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG--GALGDLAAYDAETLEK 313 (337)
T ss_dssp SCEEEEEECTTSSEEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE--SBSSEEEEEETTTCCE
T ss_pred CceeeEEECCCCCEEEEe-----CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEE--cCCCcEEEEECcCCcE
Confidence 678899999999765553 689999999999999888877788999999999999885 4689999999999998
Q ss_pred EEEEeCC
Q psy4876 547 VAELHGH 553 (609)
Q Consensus 547 ~~~l~~h 553 (609)
+..+..+
T Consensus 314 ~~~~~~~ 320 (337)
T 1pby_B 314 KGQVDLP 320 (337)
T ss_dssp EEEEECG
T ss_pred EEEEEcC
Confidence 8888654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=194.21 Aligned_cols=234 Identities=11% Similarity=-0.002 Sum_probs=169.7
Q ss_pred CCCCeEEEEEccCCCEEEEEeC-CCeEEEEeCCCCeeEEEecCCC-CceEEEEecC-CEEEEEec---CCeEEEEEcCC-
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTS-LGTVQLWDVSAKKKCRTMDGHD-VRVGALAWNT-YILSSGSR---CGNIVHHDVRS- 406 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~-dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~~~-~~L~sgs~---dg~I~iwd~~~- 406 (609)
+...|.+++|+|||++||+++. ||.++||++.+++.. .+..|. ..+..++|++ .++++++. +....+|.+..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETT
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCCeEEEEeccCCCCcceEEEEEecc
Confidence 3567999999999999999887 999999999766554 444454 6899999964 45666654 44456655543
Q ss_pred -CCeeEEEEccCCCCeEEEEEccCCC--EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEE
Q psy4876 407 -RDHKVALLQNHTQEVCGLKWSPDGR--YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 407 -~~~~~~~~~~h~~~V~~l~~spdg~--~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla 483 (609)
..... .+..+ ..+...+|+|||+ .+++++. +.+.+||+.++ +... +..+.. .+++|+|||+.++.
T Consensus 99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g------~~~~-l~~~~~--~~~~~spDG~~la~ 166 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATE-DRVALYALDGG------GLRE-LARLPG--FGFVSDIRGDLIAG 166 (582)
T ss_dssp STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECS-SCEEEEEEETT------EEEE-EEEESS--CEEEEEEETTEEEE
T ss_pred CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCC-CCceEEEccCC------cEEE-eecCCC--ceEEECCCCCEEEE
Confidence 22222 33322 2344678888886 3444444 45569999877 3332 222333 78999999976665
Q ss_pred EEec-cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCC--eEEEEECCCCceEEEEeCCCCCEEEE
Q psy4876 484 SGGG-TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQN--QLIIWKYPSLVKVAELHGHSARVLNL 560 (609)
Q Consensus 484 sggG-s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg--~I~Iwd~~~~~~~~~l~~h~~~V~~l 560 (609)
++.. ...+.|++||+.+++......+...+..++|+|||+.|++ +..++ .|++||+.+++.. .+.+|...+..+
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~--~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~ 243 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAG--LETAREARLVTVDPRDGSVE-DLELPSKDFSSY 243 (582)
T ss_dssp EEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEE--EECSSCEEEEEECTTTCCEE-ECCCSCSHHHHH
T ss_pred EEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEE--ccCCCeeEEEEEcCCCCcEE-EccCCCcChhhh
Confidence 4420 0117899999999887654445567899999999999995 33677 8999999998887 777888777777
Q ss_pred E--------EeCCCCEEEEEECCCCEEEEEc
Q psy4876 561 A--------MSPDETTVLSAGADETLRLWKI 583 (609)
Q Consensus 561 ~--------~spdg~~L~s~s~Dg~I~iWdl 583 (609)
+ |+|||.++++++.|+++++|++
T Consensus 244 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 244 RPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 7 9999999999999999999999
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-18 Score=185.58 Aligned_cols=238 Identities=18% Similarity=0.191 Sum_probs=170.7
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC----------eeEEE-----ecCCCCceEEEEe--cCCEEE----EE
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAK----------KKCRT-----MDGHDVRVGALAW--NTYILS----SG 393 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~----------~~~~~-----l~~h~~~V~~l~~--~~~~L~----sg 393 (609)
...+..+++++++.+|++++.+| |+||+.... ..+.. ...+...|.+++| ++.+|+ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34678899999999999999988 888875311 01111 1135678999999 478888 78
Q ss_pred ecCCeEEEEEcCCC-----C-----eeEEEEccCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCCCCCCccceEee
Q psy4876 394 SRCGNIVHHDVRSR-----D-----HKVALLQNHTQEVCGLKWSPD-GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL 462 (609)
Q Consensus 394 s~dg~I~iwd~~~~-----~-----~~~~~~~~h~~~V~~l~~spd-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~ 462 (609)
+.|+.|++||+.+. . ..+..+.+|...|.+++|+|+ +.+|++++.||+|++||++++ ..+...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~------~~~~~~ 188 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET------VKVCAT 188 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS------EEEEEE
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC------cceeec
Confidence 88999999998653 1 124556679999999999997 889999999999999999987 455566
Q ss_pred cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC--------CCeEEEEEcCCCCeEEEEEecCCC
Q psy4876 463 SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK--------SQVCALLWNSDYKELVSAHGFAQN 534 (609)
Q Consensus 463 ~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~--------~~v~sl~~s~~g~~l~~~sG~~dg 534 (609)
.+|...|.+++|+|+|. +|++|+ .|+.|++||++ ++....+..+ ..+.++.|++++.++++... .+|
T Consensus 189 ~~~~~~v~~v~wspdg~-~lasgs--~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~-~dg 263 (434)
T 2oit_A 189 LPSTVAVTSVCWSPKGK-QLAVGK--QNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAA-ADG 263 (434)
T ss_dssp ECGGGCEEEEEECTTSS-CEEEEE--TTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEE-TTC
T ss_pred cCCCCceeEEEEcCCCC-EEEEEc--CCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEcc-CCC
Confidence 67889999999999985 455553 89999999998 6666555422 17899999998888766543 332
Q ss_pred ------eEEEEECCCCc-----eEEEEe-------CCCCCEEEEEEeCCCCEEEEEEC-CCCEEEEEcC
Q psy4876 535 ------QLIIWKYPSLV-----KVAELH-------GHSARVLNLAMSPDETTVLSAGA-DETLRLWKIF 584 (609)
Q Consensus 535 ------~I~Iwd~~~~~-----~~~~l~-------~h~~~V~~l~~spdg~~L~s~s~-Dg~I~iWdl~ 584 (609)
.+++|++.... ....+. +...+-..+.+.++.+++++++. .+.|.|....
T Consensus 264 ~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 264 TLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp CSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred ccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 48999997542 112221 11222233444477777766654 4456666654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-16 Score=165.39 Aligned_cols=260 Identities=12% Similarity=0.079 Sum_probs=176.5
Q ss_pred EEEEEecCCC--eEEEEcC----CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEc
Q psy4876 272 LNLIDWSHFN--VLAVALG----GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWI 344 (609)
Q Consensus 272 v~~l~wsp~~--lla~s~d----g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~s 344 (609)
...++|+|++ +++++.+ +.|.+|++.... +....+.... +...+..+++
T Consensus 52 p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~-----------------------g~~~~~~~~~~~~~~p~~~~~- 107 (361)
T 3scy_A 52 PSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK-----------------------GTLHLLNTQKTMGADPCYLTT- 107 (361)
T ss_dssp CCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT-----------------------TEEEEEEEEECSSSCEEEEEE-
T ss_pred CceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC-----------------------CcEEEeeEeccCCCCcEEEEE-
Confidence 3458999997 4455554 799999876510 3445555554 5567788888
Q ss_pred cCCCEEEEEe-CCCeEEEEeCCCCeeEEEe------cC--------CCCceEEEEe--cCCEEEEEe-cCCeEEEEEcCC
Q psy4876 345 QEGYMLGVGT-SLGTVQLWDVSAKKKCRTM------DG--------HDVRVGALAW--NTYILSSGS-RCGNIVHHDVRS 406 (609)
Q Consensus 345 pdg~~Lasgs-~dg~I~iwd~~~~~~~~~l------~~--------h~~~V~~l~~--~~~~L~sgs-~dg~I~iwd~~~ 406 (609)
++++|+++. .++.|.+|++.....+..+ .+ +...+.+++| ++++|++++ .++.|.+|++..
T Consensus 108 -dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~ 186 (361)
T 3scy_A 108 -NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINP 186 (361)
T ss_dssp -CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred -CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcC
Confidence 888777776 5789999999754332211 11 1234577888 567555554 588999999876
Q ss_pred CCe------e------EEEEccCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCCCccceEee---cCCcccEE
Q psy4876 407 RDH------K------VALLQNHTQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVPGQHTFSTQPIHSL---SRHQAAVK 470 (609)
Q Consensus 407 ~~~------~------~~~~~~h~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~~~~~---~~h~~~V~ 470 (609)
... . ......+...+.+++|+|||+++++++ .++.|.+||+.++.. ..+..+ ..+.....
T Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~----~~~~~~~~~~~~~~~~~ 262 (361)
T 3scy_A 187 NANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML----DEIQTVAADTVNAQGSG 262 (361)
T ss_dssp TCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE----EEEEEEESCSSCCCCEE
T ss_pred CCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce----EEeEEEecCCCCCCCcc
Confidence 432 1 122334556688999999999887777 589999999986521 122222 33345578
Q ss_pred EEEEcCCCCcEEEEEeccC-CCeEEEEECC--CCc--eeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC--CC
Q psy4876 471 AIAWCPWSPNVLASGGGTA-DRHIYFWNVS--SGA--CLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKY--PS 543 (609)
Q Consensus 471 ~l~~sp~~~~llasggGs~-Dg~I~iwd~~--t~~--~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~--~~ 543 (609)
+++|+|+|+.++++.. . ++.|.+|++. +++ .+..+.....+..++|+|+|++|+++. ..++.|.+|++ .+
T Consensus 263 ~i~~spdg~~l~v~~~--~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~-~~~~~v~v~~~d~~~ 339 (361)
T 3scy_A 263 DIHLSPDGKYLYASNR--LKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVAC-RDTNVIQIFERDQAT 339 (361)
T ss_dssp EEEECTTSSEEEEEEC--SSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEE-TTTTEEEEEEECTTT
T ss_pred cEEECCCCCEEEEECC--CCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEE-CCCCCEEEEEEECCC
Confidence 9999999987777653 4 6899999996 455 444555555788999999999998864 36789999654 46
Q ss_pred CceEEEE-eCCCCCEEEEEEe
Q psy4876 544 LVKVAEL-HGHSARVLNLAMS 563 (609)
Q Consensus 544 ~~~~~~l-~~h~~~V~~l~~s 563 (609)
++..... ..+...+.||.|.
T Consensus 340 g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 340 GLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CCEEECSCCEECSSEEEEEEE
T ss_pred CcEeecceeeeCCCCeEEEEc
Confidence 6554332 1244578899886
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.2e-18 Score=194.43 Aligned_cols=280 Identities=10% Similarity=0.026 Sum_probs=190.1
Q ss_pred EEEEEecCCC-eEE-EEc---------CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEE
Q psy4876 272 LNLIDWSHFN-VLA-VAL---------GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCS 340 (609)
Q Consensus 272 v~~l~wsp~~-lla-~s~---------dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~ 340 (609)
+..++||||+ .|+ ++. ++.|++||+.+ +.......+ ...+.+
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~-------------------------g~~~~~~~l--~~~~~~ 114 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN-------------------------GEFVRGNEL--PRPIQY 114 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-------------------------TEECCSSCC--CSSBCC
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC-------------------------Cccccceec--Cccccc
Confidence 6689999997 444 443 58999999988 544110122 246889
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEe-cCCCCce-----------------EEEEe--cCCEEEEEecCC---
Q psy4876 341 VAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTM-DGHDVRV-----------------GALAW--NTYILSSGSRCG--- 397 (609)
Q Consensus 341 v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l-~~h~~~V-----------------~~l~~--~~~~L~sgs~dg--- 397 (609)
++|||||+.||++. ++.|++||+.+++..+.. .++...| .+++| ||+.|++++.|.
T Consensus 115 ~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~ 193 (719)
T 1z68_A 115 LCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDI 193 (719)
T ss_dssp EEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTS
T ss_pred ceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCC
Confidence 99999999999886 689999999988765533 2333222 47889 678998887652
Q ss_pred -------------------------------eEEEEEcCCCCee--EE-----EEccCCCCeEEEEEccCCCEEEEEeCC
Q psy4876 398 -------------------------------NIVHHDVRSRDHK--VA-----LLQNHTQEVCGLKWSPDGRYLASGGND 439 (609)
Q Consensus 398 -------------------------------~I~iwd~~~~~~~--~~-----~~~~h~~~V~~l~~spdg~~lasgs~D 439 (609)
.|++||+.++... +. .+.+|...+.+++|+||++++++....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~ 273 (719)
T 1z68_A 194 PVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKR 273 (719)
T ss_dssp CEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEES
T ss_pred ceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecc
Confidence 7889999876321 11 123588889999999998877775433
Q ss_pred ----CcEEEEe----CCCCCCCCCccceEee----cCCcccEE-----EEEEcCCCCcEEEE-EeccCCCeEEEEECCCC
Q psy4876 440 ----NLLNIWS----GVPGQHTFSTQPIHSL----SRHQAAVK-----AIAWCPWSPNVLAS-GGGTADRHIYFWNVSSG 501 (609)
Q Consensus 440 ----g~I~iwd----~~~~~~~~~~~~~~~~----~~h~~~V~-----~l~~sp~~~~llas-ggGs~Dg~I~iwd~~t~ 501 (609)
..|++|| +.++ +....+ ..|...+. .++|+|+|..+++. +.......|.+||+.++
T Consensus 274 ~~~~~~l~~~d~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~ 347 (719)
T 1z68_A 274 VQNVSVLSICDFREDWQTW------DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE 347 (719)
T ss_dssp STTEEEEEEEEECSSSSSE------ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST
T ss_pred ccCeEEEEEEcccCCCCCC------ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC
Confidence 2488999 7766 233233 35666666 78999999877663 32122347888888877
Q ss_pred ceeEEEc-CCCCeEEEEEcCCCCeEEEEEec---CCCeEEEEECCC--Cc-eEEEEe----CCCCCEEEEEEeCCCCEEE
Q psy4876 502 ACLDSID-TKSQVCALLWNSDYKELVSAHGF---AQNQLIIWKYPS--LV-KVAELH----GHSARVLNLAMSPDETTVL 570 (609)
Q Consensus 502 ~~~~~~~-~~~~v~sl~~s~~g~~l~~~sG~---~dg~I~Iwd~~~--~~-~~~~l~----~h~~~V~~l~~spdg~~L~ 570 (609)
+. ..+. ....+..+.++ +++.++..+.. .++.++||.+.. +. ....+. +|...+..+.|+||+++|+
T Consensus 348 ~~-~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~ 425 (719)
T 1z68_A 348 NA-IQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYA 425 (719)
T ss_dssp TC-EECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEE
T ss_pred ce-EecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEE
Confidence 63 3443 33467788777 88888876531 147788887653 32 233333 2667788999999998776
Q ss_pred E-EECC--CCEEEEEcCCCc
Q psy4876 571 S-AGAD--ETLRLWKIFEKV 587 (609)
Q Consensus 571 s-~s~D--g~I~iWdl~~~~ 587 (609)
. ++.+ ..+.+||+.+++
T Consensus 426 ~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 426 LVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp EEECCBSSCEEEEECSSSCC
T ss_pred EEcCCCCCCeEEEEECCCCC
Confidence 4 3333 468899987665
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-17 Score=171.66 Aligned_cols=276 Identities=12% Similarity=0.052 Sum_probs=181.8
Q ss_pred eEEEEEecCCC-eEE-EEcC---CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEcc
Q psy4876 271 YLNLIDWSHFN-VLA-VALG---GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQ 345 (609)
Q Consensus 271 ~v~~l~wsp~~-lla-~s~d---g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~sp 345 (609)
++..++|||++ .|+ +... ..|++||+.+ +....+... +......+.|+|
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~-------------------------~~~~~l~~~-~~~~~~~~~~sp 90 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLET-------------------------QQAVQLTEG-KGDNTFGGFIST 90 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTT-------------------------TEEEECCCS-SCBCTTTCEECT
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCC-------------------------CcEEEeecC-CCCccccceECC
Confidence 35668899997 444 4332 3789999887 554433221 222233478999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEE---EEe------------------cCCEEEEE-----ecCCeE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGA---LAW------------------NTYILSSG-----SRCGNI 399 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~---l~~------------------~~~~L~sg-----s~dg~I 399 (609)
||++|+.++.++.|.+||+.+++.......+...... +++ ++..++.+ ..+..|
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l 170 (396)
T 3c5m_A 91 DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL 170 (396)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence 9999999999999999999988766666544442222 211 12222222 345689
Q ss_pred EEEEcCCCCeeEEEEccCCCCeEEEEEcc-CCCEEEEEeCC------CcEEEEeCCCCCCCCCccceEeecCC--cccEE
Q psy4876 400 VHHDVRSRDHKVALLQNHTQEVCGLKWSP-DGRYLASGGND------NLLNIWSGVPGQHTFSTQPIHSLSRH--QAAVK 470 (609)
Q Consensus 400 ~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~D------g~I~iwd~~~~~~~~~~~~~~~~~~h--~~~V~ 470 (609)
.+||+.++. . ..+..+...+..+.|+| ++..|+.++.+ ..|++||+..+ . ...+..+ ...+.
T Consensus 171 ~~~d~~~g~-~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~------~-~~~l~~~~~~~~~~ 241 (396)
T 3c5m_A 171 IKVDIETGE-L-EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS------N-VRKIKEHAEGESCT 241 (396)
T ss_dssp EEEETTTCC-E-EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC------C-CEESSCCCTTEEEE
T ss_pred EEEECCCCc-E-EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC------c-eeEeeccCCCcccc
Confidence 999998764 2 33335677899999999 88877776654 36889998755 2 2233223 23578
Q ss_pred EEEEcCCCCcEEEEEec--cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcC-CCCeEEEEEe--------------cCC
Q psy4876 471 AIAWCPWSPNVLASGGG--TADRHIYFWNVSSGACLDSIDTKSQVCALLWNS-DYKELVSAHG--------------FAQ 533 (609)
Q Consensus 471 ~l~~sp~~~~llasggG--s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~-~g~~l~~~sG--------------~~d 533 (609)
.++|+|+|..+++.+.. ..++.|++||+.+++......... .. +.|++ +|+.++++.+ ..+
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~ 319 (396)
T 3c5m_A 242 HEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND 319 (396)
T ss_dssp EEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred ceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence 89999999877766421 112559999999887654433322 33 89999 9998776431 134
Q ss_pred CeEEEEECCCCceEEEEeCCCC-----------CEEEEEEeCCCCEEEEEEC-CCCEEEEEcC
Q psy4876 534 NQLIIWKYPSLVKVAELHGHSA-----------RVLNLAMSPDETTVLSAGA-DETLRLWKIF 584 (609)
Q Consensus 534 g~I~Iwd~~~~~~~~~l~~h~~-----------~V~~l~~spdg~~L~s~s~-Dg~I~iWdl~ 584 (609)
..|++||..+++.. .+..|.. .+..++|+|||+.|+.++. ++...||.+.
T Consensus 320 ~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 320 PFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 78999999877643 3444443 2567899999998887765 5666666654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-16 Score=160.81 Aligned_cols=241 Identities=15% Similarity=0.152 Sum_probs=187.3
Q ss_pred CCCeEEEEEccCCCEEEEEeCC------------------------CeEEEEeCCCCeeEEEec-CCCCceEEEEe--cC
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSL------------------------GTVQLWDVSAKKKCRTMD-GHDVRVGALAW--NT 387 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~d------------------------g~I~iwd~~~~~~~~~l~-~h~~~V~~l~~--~~ 387 (609)
-+.+.+|+++++|+++++...+ +.|.+||..+++.+..+. ++-.....+++ ++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3679999999999999888777 479999999888877665 44567889999 47
Q ss_pred CEEEEEecCCeEEEEEcCCCCeeEEEE---------ccCCCCeEEEEEcc-CCCEEEEEe-CCCcEEEEeCCCCCCCCCc
Q psy4876 388 YILSSGSRCGNIVHHDVRSRDHKVALL---------QNHTQEVCGLKWSP-DGRYLASGG-NDNLLNIWSGVPGQHTFST 456 (609)
Q Consensus 388 ~~L~sgs~dg~I~iwd~~~~~~~~~~~---------~~h~~~V~~l~~sp-dg~~lasgs-~Dg~I~iwd~~~~~~~~~~ 456 (609)
+++++...++.|++||.......+..+ ..+-....+|+++| +|.++++.+ .++.|++||.. +
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g------ 175 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-G------ 175 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-S------
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-C------
Confidence 888888889999999986542244444 34455789999999 888888876 68999999943 4
Q ss_pred cceEeecC----------CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC---CCCeEEEEEcCCCC
Q psy4876 457 QPIHSLSR----------HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT---KSQVCALLWNSDYK 523 (609)
Q Consensus 457 ~~~~~~~~----------h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~---~~~v~sl~~s~~g~ 523 (609)
..+..+.. +......|+++|++..++++. ..++.|++||..+|+.+..+.. ...+..++|+| +
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d--~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g- 251 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVAD--RENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-G- 251 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEE--TTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-T-
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEE--CCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-C-
Confidence 34444421 223478999999866788876 3789999999999999988853 34788999999 2
Q ss_pred eEEEEEe------cCCCeEEEEECCCCceEEEE---eCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 524 ELVSAHG------FAQNQLIIWKYPSLVKVAEL---HGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 524 ~l~~~sG------~~dg~I~Iwd~~~~~~~~~l---~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
.++...| ..++.|++|++.+++.+..+ .++...+.+|+++|+|.++++...++.|++|++...
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 3333222 23568999999999998887 367778999999999988888888999999998753
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-16 Score=182.12 Aligned_cols=276 Identities=10% Similarity=0.089 Sum_probs=181.4
Q ss_pred EEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec----CCCCeEEEEEccCCC
Q psy4876 274 LIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE----GNENVCSVAWIQEGY 348 (609)
Q Consensus 274 ~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----h~~~V~~v~~spdg~ 348 (609)
.+.|+|++ +++.+ |+.|++||+.+ +....+.... ......+++|||||+
T Consensus 21 ~~~w~~dg~~~~~~-~~~i~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ-ENNILVFNAEY-------------------------GNSSVFLENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CEEECSSSEEEEEE-TTEEEEEETTT-------------------------CCEEEEECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccEECCCCcEEEEc-CCcEEEEECCC-------------------------CceEEEEechhhhhhcccccceEECCCCC
Confidence 58999998 44444 99999999998 5544443322 111234589999999
Q ss_pred EEEEEeCC---------CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccC
Q psy4876 349 MLGVGTSL---------GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNH 417 (609)
Q Consensus 349 ~Lasgs~d---------g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h 417 (609)
+|++++.+ +.+.+||+.+++.. .+..|...+...+| +|+.|+.+ .++.|++||+.++.....+..++
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~ 152 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGK 152 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCB
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCC
Confidence 99998876 56779999998754 46678888999999 57888877 46899999998764222222233
Q ss_pred CCCe-----------------EEEEEccCCCEEEEEeCCC------------------------------------cEEE
Q psy4876 418 TQEV-----------------CGLKWSPDGRYLASGGNDN------------------------------------LLNI 444 (609)
Q Consensus 418 ~~~V-----------------~~l~~spdg~~lasgs~Dg------------------------------------~I~i 444 (609)
...+ .++.|||||++||.++.|. .|++
T Consensus 153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v 232 (740)
T 4a5s_A 153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV 232 (740)
T ss_dssp TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE
Confidence 3222 3589999999999876332 4788
Q ss_pred EeCCC---CCCCCCccceEeec------CCcccEEEEEEcCCCCcEEEEEe-ccCCCeEEEEECCCCc----eeE--EE-
Q psy4876 445 WSGVP---GQHTFSTQPIHSLS------RHQAAVKAIAWCPWSPNVLASGG-GTADRHIYFWNVSSGA----CLD--SI- 507 (609)
Q Consensus 445 wd~~~---~~~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~llasgg-Gs~Dg~I~iwd~~t~~----~~~--~~- 507 (609)
||+.+ +.. .....+. +|...+..++|+|+|+.++.... +..+..|++||+.+++ |.. .+
T Consensus 233 ~d~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~ 308 (740)
T 4a5s_A 233 VNTDSLSSVTN----ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI 308 (740)
T ss_dssp EETTSCCSSSC----CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE
T ss_pred EECCCCCCCCc----ceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee
Confidence 88887 521 0222333 37778999999999974443321 1234579999999887 321 11
Q ss_pred -c-CCCC-----eEEEEEcCCCCeEE-EEEecCC--CeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECC--
Q psy4876 508 -D-TKSQ-----VCALLWNSDYKELV-SAHGFAQ--NQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGAD-- 575 (609)
Q Consensus 508 -~-~~~~-----v~sl~~s~~g~~l~-~~sG~~d--g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D-- 575 (609)
. +... ...+.|+|||+.++ ..+ ..+ ..|++||...+... .+......|..+.. +|++.|+..+..
T Consensus 309 ~~~~~~~v~~~~~~~p~fspDG~~l~~~~s-~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~ 385 (740)
T 4a5s_A 309 EMSTTGWVGRFRPSEPHFTLDGNSFYKIIS-NEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYK 385 (740)
T ss_dssp EECSSSCSSSSSCCCCEECTTSSEEEEEEE-CTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGG
T ss_pred eccCCceEccCcCCCceEcCCCCEEEEEEE-cCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCC
Confidence 2 2222 34789999999887 443 233 46888898776554 34333445655542 456655544432
Q ss_pred ---CCEEEEEcC
Q psy4876 576 ---ETLRLWKIF 584 (609)
Q Consensus 576 ---g~I~iWdl~ 584 (609)
+...||.+.
T Consensus 386 ~~~~~~~ly~v~ 397 (740)
T 4a5s_A 386 GMPGGRNLYKIQ 397 (740)
T ss_dssp GCTTCBEEEEEE
T ss_pred CCCceeEEEEEE
Confidence 345555543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=6.2e-15 Score=148.18 Aligned_cols=235 Identities=15% Similarity=0.153 Sum_probs=174.6
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEec------CCCCceEEEEe-c--CCEEEEEec-CCeEEEEEc
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMD------GHDVRVGALAW-N--TYILSSGSR-CGNIVHHDV 404 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~------~h~~~V~~l~~-~--~~~L~sgs~-dg~I~iwd~ 404 (609)
-..+.+++++++|+++++...++.|.+||.. ++.+..+. ++...+..+++ + +.++++... ++.|.+||.
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~ 107 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ 107 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC
Confidence 3568899999999988888888999999987 56666664 24457888998 2 344544433 789999994
Q ss_pred CCCCeeEEEEc-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec--CCcccEEEEEEcCCCCcE
Q psy4876 405 RSRDHKVALLQ-NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS--RHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 405 ~~~~~~~~~~~-~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~l 481 (609)
++ ..+..+. .+...+.+++++++|+++++...++.|.+||.. + ..+..+. .+...+.++++++++. +
T Consensus 108 -~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g------~~~~~~~~~~~~~~p~~i~~~~~g~-l 177 (286)
T 1q7f_A 108 -YG-QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-G------NVLHKFGCSKHLEFPNGVVVNDKQE-I 177 (286)
T ss_dssp -TS-CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S------CEEEEEECTTTCSSEEEEEECSSSE-E
T ss_pred -CC-cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-C------CEEEEeCCCCccCCcEEEEECCCCC-E
Confidence 33 3444443 344678999999999988887788999999965 3 3344442 3445689999999884 6
Q ss_pred EEEEeccCCCeEEEEECCCCceeEEEcCC---CCeEEEEEcCCCCeEEEEEecCCC-eEEEEECCCCceEEEEeCCC--C
Q psy4876 482 LASGGGTADRHIYFWNVSSGACLDSIDTK---SQVCALLWNSDYKELVSAHGFAQN-QLIIWKYPSLVKVAELHGHS--A 555 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t~~~~~~~~~~---~~v~sl~~s~~g~~l~~~sG~~dg-~I~Iwd~~~~~~~~~l~~h~--~ 555 (609)
+++. ..++.|++||. .++.+..+... ..+..++++++|..+++. ..++ .|.+|+. +++.+..+..+. .
T Consensus 178 ~v~~--~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~ 251 (286)
T 1q7f_A 178 FISD--NRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIAD--NHNNFNLTIFTQ-DGQLISALESKVKHA 251 (286)
T ss_dssp EEEE--GGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEE--CSSSCEEEEECT-TSCEEEEEEESSCCS
T ss_pred EEEE--CCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEe--CCCCEEEEEECC-CCCEEEEEcccCCCC
Confidence 6665 36899999997 46666676543 478999999999877663 3465 9999994 566777665543 3
Q ss_pred CEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 556 RVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 556 ~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
.+.+++++|+|+++++ +.|+.|++|++....
T Consensus 252 ~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 252 QCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp CEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred cceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 4789999999987776 679999999986543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=183.52 Aligned_cols=242 Identities=12% Similarity=0.126 Sum_probs=172.2
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCc-----eEEEEe--cCCEEEEEecC---------CeE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVR-----VGALAW--NTYILSSGSRC---------GNI 399 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~-----V~~l~~--~~~~L~sgs~d---------g~I 399 (609)
....+++|+|||.+|+++ ||.|++||+.+++....+.+|... ...++| |++.|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999999886 899999999999988888877643 223566 68888888876 667
Q ss_pred EEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceE-eecCCcccE---------
Q psy4876 400 VHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIH-SLSRHQAAV--------- 469 (609)
Q Consensus 400 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V--------- 469 (609)
.+||+.++. ...+..|...+...+|||||+.||.+. |+.|++||+.++. ... +..++...+
T Consensus 95 ~~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~------~~~lt~~g~~~~~~~g~~~~v~ 165 (740)
T 4a5s_A 95 DIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLP------SYRITWTGKEDIIYNGITDWVY 165 (740)
T ss_dssp EEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSC------CEECCSCCBTTTEEESBCCHHH
T ss_pred EEEECCCCc--EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCc------eEEEcCCCCccceecCcccccc
Confidence 899999873 445667788899999999999999985 6899999998773 221 112222222
Q ss_pred --------EEEEEcCCCCcEEEEEe-------------------------------cc--CCCeEEEEECCC---Cc--e
Q psy4876 470 --------KAIAWCPWSPNVLASGG-------------------------------GT--ADRHIYFWNVSS---GA--C 503 (609)
Q Consensus 470 --------~~l~~sp~~~~llasgg-------------------------------Gs--~Dg~I~iwd~~t---~~--~ 503 (609)
.++.|+|||+.|+.... |. ....|++||+.+ ++ .
T Consensus 166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~ 245 (740)
T 4a5s_A 166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT 245 (740)
T ss_dssp HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence 35899999987665431 00 012688999998 73 2
Q ss_pred eEEEc-------CCCCeEEEEEcCCCCeEEEEEecC--CCeEEEEECCCCc----eE--EEE--eCCCCCEE-----EEE
Q psy4876 504 LDSID-------TKSQVCALLWNSDYKELVSAHGFA--QNQLIIWKYPSLV----KV--AEL--HGHSARVL-----NLA 561 (609)
Q Consensus 504 ~~~~~-------~~~~v~sl~~s~~g~~l~~~sG~~--dg~I~Iwd~~~~~----~~--~~l--~~h~~~V~-----~l~ 561 (609)
...+. ....+..++|+|||+.++...... +..|.+||..+++ +. ..+ .+|...|. .++
T Consensus 246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~ 325 (740)
T 4a5s_A 246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPH 325 (740)
T ss_dssp EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCE
T ss_pred EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCce
Confidence 23333 334688999999999776654322 3479999998876 21 122 45666555 789
Q ss_pred EeCCCCEEE-EEEC-C--CCEEEEEcCCCcc
Q psy4876 562 MSPDETTVL-SAGA-D--ETLRLWKIFEKVK 588 (609)
Q Consensus 562 ~spdg~~L~-s~s~-D--g~I~iWdl~~~~~ 588 (609)
|+|||+.|+ ..+. + ..|++|++.++..
T Consensus 326 fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 326 FTLDGNSFYKIISNEEGYRHICYFQIDKKDC 356 (740)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred EcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence 999999877 6664 3 4678888876543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-16 Score=162.69 Aligned_cols=240 Identities=13% Similarity=0.050 Sum_probs=167.8
Q ss_pred EEEccCCCEEEEEeC-CC--eEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEc
Q psy4876 341 VAWIQEGYMLGVGTS-LG--TVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQ 415 (609)
Q Consensus 341 v~~spdg~~Lasgs~-dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~ 415 (609)
.+|+|||++|++++. +| .|.+||+.+++......++...+..+.| +++.|+.++.++.|++||+.++. ......
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~-~~~~~~ 119 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE-ENVVYQ 119 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC-EEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc-ceeeee
Confidence 889999999999887 66 4888999998887777777666656667 68899999999999999999874 444455
Q ss_pred cCCCCeEEEE--EccCCCEEEEEe----------------------CCCcEEEEeCCCCCCCCCccceEeecCCcccEEE
Q psy4876 416 NHTQEVCGLK--WSPDGRYLASGG----------------------NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKA 471 (609)
Q Consensus 416 ~h~~~V~~l~--~spdg~~lasgs----------------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~ 471 (609)
.+...+.... +++++.+++... .+..|++||+.++ + ...+..+...+..
T Consensus 120 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g------~-~~~l~~~~~~~~~ 192 (388)
T 3pe7_A 120 VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG------E-STVILQENQWLGH 192 (388)
T ss_dssp CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC------C-EEEEEEESSCEEE
T ss_pred chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC------c-eEEeecCCccccc
Confidence 5555554444 489999887432 3468999999987 2 3344456677899
Q ss_pred EEEcC-CCCcEEEEEeccC---CCeEEEEECCCCceeEEEcCC--CCeEEEEEcCCCCeEEEEEecCCC---eEEEEECC
Q psy4876 472 IAWCP-WSPNVLASGGGTA---DRHIYFWNVSSGACLDSIDTK--SQVCALLWNSDYKELVSAHGFAQN---QLIIWKYP 542 (609)
Q Consensus 472 l~~sp-~~~~llasggGs~---Dg~I~iwd~~t~~~~~~~~~~--~~v~sl~~s~~g~~l~~~sG~~dg---~I~Iwd~~ 542 (609)
++|+| ++..++++..+.. ...|.++|+..+......... ..+..+.|+|+|+.|+..+....+ .|++||+.
T Consensus 193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 272 (388)
T 3pe7_A 193 PIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPE 272 (388)
T ss_dssp EEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTT
T ss_pred cEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecC
Confidence 99999 9876666553111 347888898765543333333 247788999999988775432222 49999999
Q ss_pred CCce--EEEEeCCCCC---EEEEEEeCCCCEEEEE---------ECCCCEEEEEcCCCcc
Q psy4876 543 SLVK--VAELHGHSAR---VLNLAMSPDETTVLSA---------GADETLRLWKIFEKVK 588 (609)
Q Consensus 543 ~~~~--~~~l~~h~~~---V~~l~~spdg~~L~s~---------s~Dg~I~iWdl~~~~~ 588 (609)
+++. +..+.++... ...++|+|||+.|+.. ..+..|++||+.++..
T Consensus 273 ~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 273 TLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp TCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred CCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 8874 3333331110 1123799999988754 4567899999988654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-15 Score=157.36 Aligned_cols=245 Identities=11% Similarity=0.057 Sum_probs=163.6
Q ss_pred EEEEEecCCC--eEEEEcCCeEEEEeCC-CCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHFN--VLAVALGGSIYLWNGE-SDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~~--lla~s~dg~I~iWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
+..++|+|++ +++++.+ .|.+|++. + +....+......+.+.+++|+|+|+
T Consensus 42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~~-------------------------g~~~~~~~~~~~g~~~~~~~spdg~ 95 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMK-KWSSFAVKSP-------------------------TEIVHEASHPIGGHPRANDADTNTR 95 (365)
T ss_dssp CSEEEECTTSSEEEEEEBT-EEEEEEEEET-------------------------TEEEEEEEEECCSSGGGGCTTSCCE
T ss_pred CcEEEECCCCCEEEEEccc-eEEEEEECCC-------------------------CCEEEeeEeecCCCCccEEECCCCC
Confidence 4568999997 4455555 99999986 5 4443333322123366789999998
Q ss_pred E--EEEEe-------------CCCeEEEEeCC-CCeeEEEec----CCCCceEEEEe--cCCEEEEEec-CCeEEEEEcC
Q psy4876 349 M--LGVGT-------------SLGTVQLWDVS-AKKKCRTMD----GHDVRVGALAW--NTYILSSGSR-CGNIVHHDVR 405 (609)
Q Consensus 349 ~--Lasgs-------------~dg~I~iwd~~-~~~~~~~l~----~h~~~V~~l~~--~~~~L~sgs~-dg~I~iwd~~ 405 (609)
+ ++++. .+|.+.+|++. +++....+. .+...+.+++| ++++|++++. ++.|.+||+.
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~ 175 (365)
T 1jof_A 96 AIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKL 175 (365)
T ss_dssp EEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEEC
Confidence 4 44553 68999999997 455544443 25567899999 5777777654 6799999998
Q ss_pred -CCCee-EEEEc--cCCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCC--CCCCCCCccceEeec----CCcc------c
Q psy4876 406 -SRDHK-VALLQ--NHTQEVCGLKWSPDGRYLASGGN-DNLLNIWSGV--PGQHTFSTQPIHSLS----RHQA------A 468 (609)
Q Consensus 406 -~~~~~-~~~~~--~h~~~V~~l~~spdg~~lasgs~-Dg~I~iwd~~--~~~~~~~~~~~~~~~----~h~~------~ 468 (609)
++... +..+. .|...+..++|+|||++|++++. ++.|.+|++. ++........+..+. +|.. .
T Consensus 176 ~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 255 (365)
T 1jof_A 176 ASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLY 255 (365)
T ss_dssp TTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSE
T ss_pred CCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccc
Confidence 55321 22333 24667999999999999888775 6899999875 331100000111221 1222 5
Q ss_pred EEEEE-EcCCCCcEEEEEeccCC----CeEEEEECC-CCceeE---EEc-CCCCeEEEEEcC---CCCeEEEEEecCCCe
Q psy4876 469 VKAIA-WCPWSPNVLASGGGTAD----RHIYFWNVS-SGACLD---SID-TKSQVCALLWNS---DYKELVSAHGFAQNQ 535 (609)
Q Consensus 469 V~~l~-~sp~~~~llasggGs~D----g~I~iwd~~-t~~~~~---~~~-~~~~v~sl~~s~---~g~~l~~~sG~~dg~ 535 (609)
+..++ |+|+|+.++++..+ .+ +.|.+|++. +++... .+. ....+..++|+| +|++|+++. ..++.
T Consensus 256 ~~~i~~~spdG~~l~v~~~~-~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~-~~~~~ 333 (365)
T 1jof_A 256 RADVCALTFSGKYMFASSRA-NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD-DQEGW 333 (365)
T ss_dssp EEEEEEECTTSSEEEEEEEE-SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC-SSSCE
T ss_pred cccEEEECCCCCEEEEECCC-CCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE-cCCCe
Confidence 88999 99999877766532 22 289999996 666543 233 234567899999 899998863 34689
Q ss_pred EEEEECCCC
Q psy4876 536 LIIWKYPSL 544 (609)
Q Consensus 536 I~Iwd~~~~ 544 (609)
|.||++...
T Consensus 334 v~v~~~~~~ 342 (365)
T 1jof_A 334 LEIYRWKDE 342 (365)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEchh
Confidence 999998655
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.70 E-value=7.2e-15 Score=151.01 Aligned_cols=261 Identities=9% Similarity=0.092 Sum_probs=182.7
Q ss_pred EEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~ 348 (609)
|+++.|+++. ++.++.++.+++|.. .. ...+. +...+.+++|+++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~---~~~~~~~~~~~~~~~~~~~g~ 57 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTITA---------------------------EP---WLEISKKGLQLEGLNFDRQGQ 57 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEEEC---------------------------EE---EEEEESSCCCEEEEEECTTSC
T ss_pred cceeeecCCccceeEEeecccCccccc---------------------------ce---eEEEeccCccccCcEECCCCC
Confidence 5567777764 444566778888821 11 22222 556789999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecC----CeEEEEEcCCCCeeEEEEc--cCCCC
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRC----GNIVHHDVRSRDHKVALLQ--NHTQE 420 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~d----g~I~iwd~~~~~~~~~~~~--~h~~~ 420 (609)
+++++..++.|.+||..+++.......+...+.+++| ++.++++...+ +.|.+||..+.. ....+. .+...
T Consensus 58 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~ 136 (333)
T 2dg1_A 58 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN-LQDIIEDLSTAYC 136 (333)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS-CEEEECSSSSCCC
T ss_pred EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE-EEEEEccCccCCc
Confidence 8888888999999999887766555456778999999 46677766665 689999988764 222232 24467
Q ss_pred eEEEEEccCCCEEEEEeC------CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEE
Q psy4876 421 VCGLKWSPDGRYLASGGN------DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIY 494 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~ 494 (609)
+.+++++|+|+++++... .+.|+.||..++ + +..+..+...+..++|+|++..++++. +.++.|.
T Consensus 137 ~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~------~-~~~~~~~~~~~~~i~~~~dg~~l~v~~--~~~~~i~ 207 (333)
T 2dg1_A 137 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR------T-VTPIIQNISVANGIALSTDEKVLWVTE--TTANRLH 207 (333)
T ss_dssp EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC------C-EEEEEEEESSEEEEEECTTSSEEEEEE--GGGTEEE
T ss_pred ccceEECCCCCEEEEeccccccCCCceEEEEeCCCC------E-EEEeecCCCcccceEECCCCCEEEEEe--CCCCeEE
Confidence 999999999988777654 356777776544 1 222223334578999999987676665 3578999
Q ss_pred EEECCC-CceeEE--------EcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCC------CEEE
Q psy4876 495 FWNVSS-GACLDS--------IDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSA------RVLN 559 (609)
Q Consensus 495 iwd~~t-~~~~~~--------~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~------~V~~ 559 (609)
+||+.+ +..+.. +.....+..++++++|..+++.. .++.|.+||. .++.+..+..+.. .+.+
T Consensus 208 ~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~--~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~ 284 (333)
T 2dg1_A 208 RIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY--GQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTH 284 (333)
T ss_dssp EEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE--TTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCE
T ss_pred EEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEc--CCCEEEEECC-CCCEEEEEEcCCCccccccCcce
Confidence 999964 433321 11224678899999998776643 5789999997 5667777654433 6899
Q ss_pred EEEeCCCCEEEEEECC
Q psy4876 560 LAMSPDETTVLSAGAD 575 (609)
Q Consensus 560 l~~spdg~~L~s~s~D 575 (609)
++|+||+..|+.++.+
T Consensus 285 ~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 285 PQFIPGTNQLIICSND 300 (333)
T ss_dssp EEECTTSCEEEEEEEC
T ss_pred EEECCCCCEEEEEeCc
Confidence 9999998877766655
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-15 Score=157.14 Aligned_cols=259 Identities=7% Similarity=0.046 Sum_probs=181.9
Q ss_pred EEEecCCC-eEE-EE----------cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-----CCC
Q psy4876 274 LIDWSHFN-VLA-VA----------LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-----GNE 336 (609)
Q Consensus 274 ~l~wsp~~-lla-~s----------~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----h~~ 336 (609)
.++|+|++ .+. +. .++.|.+||..+ .+......+. +..
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t-------------------------~~~~~~i~~~~~~~~~g~ 108 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK-------------------------LTFEKEISLPPKRVQGLN 108 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT-------------------------CCEEEEEEECTTBCCBCC
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC-------------------------CcEEEEEEcCccccccCC
Confidence 68999997 333 33 256799999887 3333222221 234
Q ss_pred CeEEEEEccCCCEEEEEeC--CCeEEEEeCCCCeeEEE-ecCCCCceEEEEe-c-CCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 337 NVCSVAWIQEGYMLGVGTS--LGTVQLWDVSAKKKCRT-MDGHDVRVGALAW-N-TYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~--dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~-~-~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
....++|+|||++|+++.. ++.|.+||+.+++.+.. +.. ........+ + +..+++.+.||.+.+|++.......
T Consensus 109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~ 187 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA 187 (361)
T ss_dssp CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence 5778999999999998864 57999999999998887 553 222111222 2 3678889999999999987533333
Q ss_pred EE------EccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC------C----cccEEEEEEc
Q psy4876 412 AL------LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR------H----QAAVKAIAWC 475 (609)
Q Consensus 412 ~~------~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~------h----~~~V~~l~~s 475 (609)
.. +..+...+ .+.+++++..++..+.++.|+++|+..... ..+..+.. + ......++|+
T Consensus 188 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~----~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 188 SQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV----KVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp EEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC----EEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred eeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc----eecccccccCccccccccccCCeeEEEEe
Confidence 11 11222222 344567888888888899999999975421 11111110 0 0111237899
Q ss_pred CCCCcEEEEEe--cc------CCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC--c
Q psy4876 476 PWSPNVLASGG--GT------ADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL--V 545 (609)
Q Consensus 476 p~~~~llasgg--Gs------~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~--~ 545 (609)
|++..++++.. |. ..+.|.+||+.+++.+..+..+. +.+++|+|+|++|+++. . +.|.|||..++ +
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n--~-~~v~v~D~~t~~l~ 338 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLD--G-GNVNVYDISQPEPK 338 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEEC--S-SCEEEEECSSSSCE
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeC--C-CeEEEEECCCCcce
Confidence 99888877652 00 13589999999999999998888 99999999999888753 3 99999999999 9
Q ss_pred eEEEEeCCCCCEEEEEEeCCCC
Q psy4876 546 KVAELHGHSARVLNLAMSPDET 567 (609)
Q Consensus 546 ~~~~l~~h~~~V~~l~~spdg~ 567 (609)
.+..+..+......++++|+|.
T Consensus 339 ~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 339 LLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEETTSCSSEEEEEECCCSC
T ss_pred eeEEeccCCCCcEEEEecCCCC
Confidence 9988877778889999999986
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-14 Score=147.65 Aligned_cols=240 Identities=11% Similarity=0.132 Sum_probs=164.2
Q ss_pred CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCC---C--eEEEE
Q psy4876 288 GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSL---G--TVQLW 362 (609)
Q Consensus 288 dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~d---g--~I~iw 362 (609)
++.|++||+.+ +....+ ..+.+++|+|||++||.++.+ + .|.+|
T Consensus 42 ~~~l~~~d~~~-------------------------~~~~~l------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~ 90 (347)
T 2gop_A 42 ENTIVIENLKN-------------------------NARRFI------ENATMPRISPDGKKIAFMRANEEKKVSEIWVA 90 (347)
T ss_dssp EEEEEEEETTT-------------------------CCEEEE------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEE
T ss_pred cceEEEEeCCC-------------------------CceEEc------ccCCCeEECCCCCEEEEEEeccCCCcceEEEE
Confidence 56899999987 554443 457899999999999987654 3 48888
Q ss_pred eCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecC---------------------------CeEEEEEcCCCCeeEEE
Q psy4876 363 DVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRC---------------------------GNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 363 d~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~d---------------------------g~I~iwd~~~~~~~~~~ 413 (609)
|+.+++.......+ . +..++| +++.|+.++.+ ..|.+||+.++. .+..
T Consensus 91 ~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~-~~~~ 167 (347)
T 2gop_A 91 DLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE-VIEE 167 (347)
T ss_dssp ETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE-EEEE
T ss_pred ECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe-EEee
Confidence 98887766555433 3 899999 57777777632 579999998764 3233
Q ss_pred EccCCCCeEEEEEccCCCEEEEEeCCC-------cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 414 LQNHTQEVCGLKWSPDGRYLASGGNDN-------LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~lasgs~Dg-------~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
+.. . .+..++|+||| +++++..++ ...||.+.++ ....+..+ ..+..+ +|+|..+++.+.
T Consensus 168 l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-------~~~~l~~~-~~~~~~--spdg~~l~~~~~ 234 (347)
T 2gop_A 168 FEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-------KEEKMFEK-VSFYAV--DSDGERILLYGK 234 (347)
T ss_dssp EEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-------EEEEEEEE-ESEEEE--EECSSCEEEEEC
T ss_pred ecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-------ceEEeccC-cceeeE--CCCCCEEEEEEc
Confidence 433 3 78899999999 777776542 3344443333 23334334 455544 999987776653
Q ss_pred cc-----CCCeEEEEECCCCceeEEEcC-CCCeEE-EEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEE
Q psy4876 487 GT-----ADRHIYFWNVSSGACLDSIDT-KSQVCA-LLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLN 559 (609)
Q Consensus 487 Gs-----~Dg~I~iwd~~t~~~~~~~~~-~~~v~s-l~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~ 559 (609)
.. ....|.+|| +++....... ...+.. +.|+ ++ .+++ +..++.++|| +.+++. ..+..+...|.+
T Consensus 235 ~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~--~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~ 306 (347)
T 2gop_A 235 PEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFT--LFEEGSVNLY-IWDGEI-KPIAKGRHWIMG 306 (347)
T ss_dssp CSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEE--EEETTEEEEE-EESSSE-EEEECSSSEEEE
T ss_pred cccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEE--EecCCcEEEE-EcCCce-EEEecCCCeEEe
Confidence 11 135788888 5554433333 346775 8999 87 5555 3478899999 876654 444456788999
Q ss_pred EEEeCCCCEEEEEECCCCE-EEEEcC
Q psy4876 560 LAMSPDETTVLSAGADETL-RLWKIF 584 (609)
Q Consensus 560 l~~spdg~~L~s~s~Dg~I-~iWdl~ 584 (609)
++|+| .++++++.++.. .||.+.
T Consensus 307 ~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 307 FDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEESS--SEEEEEECSSSCCEEEEES
T ss_pred eeeeC--cEEEEEcCCCChHHheEeC
Confidence 99999 688888887776 888876
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=4.4e-15 Score=167.60 Aligned_cols=282 Identities=13% Similarity=0.031 Sum_probs=185.1
Q ss_pred eeEEEEEecCCCeEEEEc----CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeE------
Q psy4876 270 YYLNLIDWSHFNVLAVAL----GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVC------ 339 (609)
Q Consensus 270 ~~v~~l~wsp~~lla~s~----dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~------ 339 (609)
..+..++|++++++.+.. ++...||....+ +....+.. +...+.
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~------------------------~~~~~l~~--~~~~~~~~~~~~ 77 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD------------------------GAEESALP--APWNVRNRVFEY 77 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT------------------------SCEEESSC--TTCCBCCCGGGT
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEECCC------------------------CCcceeCC--CCcccccccccc
Confidence 357789999887554443 678999986331 22222211 333333
Q ss_pred ---EEEEc--cCCCE-EEEEeC-CCeEEEEeCC--CCeeEEEecC-----CCCceEEEEe--cCCEEEEEecC-------
Q psy4876 340 ---SVAWI--QEGYM-LGVGTS-LGTVQLWDVS--AKKKCRTMDG-----HDVRVGALAW--NTYILSSGSRC------- 396 (609)
Q Consensus 340 ---~v~~s--pdg~~-Lasgs~-dg~I~iwd~~--~~~~~~~l~~-----h~~~V~~l~~--~~~~L~sgs~d------- 396 (609)
.+.|+ |||+. |+.+.. +..|.+|++. .......+.. |...+..++| +++.|++++.+
T Consensus 78 ~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~ 157 (662)
T 3azo_A 78 SGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPS 157 (662)
T ss_dssp CCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTT
T ss_pred CCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCC
Confidence 55565 99988 776654 4567777765 2044555665 6778899999 57888888876
Q ss_pred ---CeEEEEEcCCCC----eeEEEEc-cCCCCeEEEEEccCCCEEEEEeCCC--------cEEEEeCC-CCCCCCCccce
Q psy4876 397 ---GNIVHHDVRSRD----HKVALLQ-NHTQEVCGLKWSPDGRYLASGGNDN--------LLNIWSGV-PGQHTFSTQPI 459 (609)
Q Consensus 397 ---g~I~iwd~~~~~----~~~~~~~-~h~~~V~~l~~spdg~~lasgs~Dg--------~I~iwd~~-~~~~~~~~~~~ 459 (609)
..|++||+.+.. .....+. .+...+..++|+|||++|+.++.++ .|++||+. ++.. ....
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~---~~~~ 234 (662)
T 3azo_A 158 DVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF---ADTR 234 (662)
T ss_dssp CEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE---EEEE
T ss_pred CceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc---cccE
Confidence 589999998720 1344555 5667788899999999999887553 79999998 3410 0122
Q ss_pred EeecCCcccEEEEEEcCCCCcEEEEEeccCCC--eEEEEECCCCceeEEEcCCCC---------eEEEEEcCCCCeEEEE
Q psy4876 460 HSLSRHQAAVKAIAWCPWSPNVLASGGGTADR--HIYFWNVSSGACLDSIDTKSQ---------VCALLWNSDYKELVSA 528 (609)
Q Consensus 460 ~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg--~I~iwd~~t~~~~~~~~~~~~---------v~sl~~s~~g~~l~~~ 528 (609)
.....|...+..++|+|+|. +++++. .++ .|.+||+.+++.......+.. +..++|+++++.++++
T Consensus 235 ~l~~~~~~~~~~~~~spdg~-l~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~ 311 (662)
T 3azo_A 235 TLLGGPEEAIAQAEWAPDGS-LIVATD--RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVH 311 (662)
T ss_dssp EEEEETTBCEEEEEECTTSC-EEEEEC--TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred EeCCCCCceEcceEECCCCe-EEEEEC--CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEE
Confidence 22334567899999999998 766653 566 778888777765544333221 4678999999988774
Q ss_pred EecCCCeEEEE--ECCCCceEEEEeCCCCCEEEE-EEeCCCCEEEEEECCCCEEE--EEcCCCc
Q psy4876 529 HGFAQNQLIIW--KYPSLVKVAELHGHSARVLNL-AMSPDETTVLSAGADETLRL--WKIFEKV 587 (609)
Q Consensus 529 sG~~dg~I~Iw--d~~~~~~~~~l~~h~~~V~~l-~~spdg~~L~s~s~Dg~I~i--Wdl~~~~ 587 (609)
. . +.++|| |..++. +..+..|...+..+ +++.+.-++++++.+....| ||+.+++
T Consensus 312 ~--~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 312 G--K-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp B--S-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred E--c-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 3 5 888888 555554 67777887778777 55444334445565654444 4554544
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-14 Score=152.61 Aligned_cols=261 Identities=10% Similarity=0.014 Sum_probs=182.1
Q ss_pred cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEEEEEeC----------
Q psy4876 287 LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYMLGVGTS---------- 355 (609)
Q Consensus 287 ~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~---------- 355 (609)
.|+.|++||..+ ++.. .++. +.. . .++|+|||++|+++..
T Consensus 29 ~d~~v~v~D~~t-------------------------~~~~--~~i~~g~~-p-~i~~spdg~~lyv~~~~~~~~~~g~~ 79 (361)
T 2oiz_A 29 TESRVHVYDYTN-------------------------GKFL--GMVPTAFN-G-HVQVSNDGKKIYTMTTYHERITRGKR 79 (361)
T ss_dssp GGCEEEEEETTT-------------------------CCEE--EEEECCEE-E-EEEECTTSSEEEEEEEEETTSSSSCE
T ss_pred ccCeEEEEECCC-------------------------CeEE--EEecCCCC-C-ceEECCCCCEEEEEEecccccccCCC
Confidence 367999999887 5443 3343 323 3 8999999999998863
Q ss_pred CCeEEEEeCCCCeeEEEecCC------CCceEEEEe--cCCEEEEEec--CCeEEEEEcCCCCeeEEE-EccCCCCeEEE
Q psy4876 356 LGTVQLWDVSAKKKCRTMDGH------DVRVGALAW--NTYILSSGSR--CGNIVHHDVRSRDHKVAL-LQNHTQEVCGL 424 (609)
Q Consensus 356 dg~I~iwd~~~~~~~~~l~~h------~~~V~~l~~--~~~~L~sgs~--dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l 424 (609)
++.|.+||+.+.+.+..+... ......+++ ++++|+++.. ++.|.+||+.+. ..+.. +. +.. ...+
T Consensus 80 ~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~-~~~~~~i~-~~~-~~~v 156 (361)
T 2oiz_A 80 SDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG-DYVEDVTA-AAG-CWSV 156 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT-EEEEEEGG-GTT-EEEE
T ss_pred CCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC-cEEEEEec-CCC-ccee
Confidence 567999999998888877532 234556777 6888888864 589999999987 45555 33 222 2335
Q ss_pred EEccCC-CEEEEEeCCCcEEEEeCCCCCCCCCccce------EeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEE
Q psy4876 425 KWSPDG-RYLASGGNDNLLNIWSGVPGQHTFSTQPI------HSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWN 497 (609)
Q Consensus 425 ~~spdg-~~lasgs~Dg~I~iwd~~~~~~~~~~~~~------~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd 497 (609)
.+.|++ ..+++.+.||.+.+|++.... +.. ..+..+..++ .+.+.+++..+++.. .++.|.++|
T Consensus 157 ~~~p~~~~~~~~~~~dg~~~~v~~~~~g-----~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~---~~~~v~v~d 227 (361)
T 2oiz_A 157 IPQPNRPRSFMTICGDGGLLTINLGEDG-----KVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVS---YYGNVYSAD 227 (361)
T ss_dssp EECTTSSSEEEEEETTSSEEEEEECTTS-----SEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEB---TTSEEEEEE
T ss_pred EEcCCCCeeEEEECCCCcEEEEEECCCC-----cEeeeccccceEcCCCCce-EEEecccCCEEEEEe---CCCeEEEEE
Confidence 677865 678888899999999986521 211 1122222222 233356665555543 688999999
Q ss_pred CCCCce--eEEEcCC-----------CCeEEEEEcCCCCeEEEEEe-c--------CCCeEEEEECCCCceEEEEeCCCC
Q psy4876 498 VSSGAC--LDSIDTK-----------SQVCALLWNSDYKELVSAHG-F--------AQNQLIIWKYPSLVKVAELHGHSA 555 (609)
Q Consensus 498 ~~t~~~--~~~~~~~-----------~~v~sl~~s~~g~~l~~~sG-~--------~dg~I~Iwd~~~~~~~~~l~~h~~ 555 (609)
+..+.. +..+... .....++|+++++.++++.. . ..+.|.+||..+++.+..+..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~- 306 (361)
T 2oiz_A 228 FSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD- 306 (361)
T ss_dssp CSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-
T ss_pred ecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-
Confidence 975542 2222211 11223789999999887643 0 14589999999999999998877
Q ss_pred CEEEEEEeCCCCEEEEEECCCCEEEEEcCCC--ccchh
Q psy4876 556 RVLNLAMSPDETTVLSAGADETLRLWKIFEK--VKSKK 591 (609)
Q Consensus 556 ~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~--~~~~k 591 (609)
+.+++|+|||++|++++. +.|.+||..++ +....
T Consensus 307 -p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~ 342 (361)
T 2oiz_A 307 -ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRT 342 (361)
T ss_dssp -CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEE
T ss_pred -eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEE
Confidence 899999999999998886 99999999988 55443
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-14 Score=163.38 Aligned_cols=243 Identities=10% Similarity=0.049 Sum_probs=174.5
Q ss_pred CCeEEEEEccCCCEEEEEeCCC-----eEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCe----------
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLG-----TVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGN---------- 398 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg-----~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~---------- 398 (609)
..+..++|||||++||.+..++ .|++||+.+++.+.....+ ..+..++| +++.|+.++.++.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccc
Confidence 4688999999999999876543 8999999999876643322 23667889 6788888887765
Q ss_pred ------EEEEEcCCCCee-EEEEc--cCCCCeEEEEEccCCCEEEEEeC-----CCcEEEEeCCC------CCCCCCccc
Q psy4876 399 ------IVHHDVRSRDHK-VALLQ--NHTQEVCGLKWSPDGRYLASGGN-----DNLLNIWSGVP------GQHTFSTQP 458 (609)
Q Consensus 399 ------I~iwd~~~~~~~-~~~~~--~h~~~V~~l~~spdg~~lasgs~-----Dg~I~iwd~~~------~~~~~~~~~ 458 (609)
|++|++.++... ...+. .|...+.++.|+|||++|+.++. +..|++||+.+ +. ..
T Consensus 204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-----~~ 278 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI-----LK 278 (710)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS-----CC
T ss_pred cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc-----cc
Confidence 999999876422 22223 34566889999999999988765 57899999976 31 13
Q ss_pred eEeecCCcccEEEEEEcCCCCcEEEEEec-cCCCeEEEEECCCCce--eEEE-cCCC--CeEEEEEcCCCCeEEEEEecC
Q psy4876 459 IHSLSRHQAAVKAIAWCPWSPNVLASGGG-TADRHIYFWNVSSGAC--LDSI-DTKS--QVCALLWNSDYKELVSAHGFA 532 (609)
Q Consensus 459 ~~~~~~h~~~V~~l~~sp~~~~llasggG-s~Dg~I~iwd~~t~~~--~~~~-~~~~--~v~sl~~s~~g~~l~~~sG~~ 532 (609)
...+..+...+.. .|+|+|..+++.+.. .....|.+||+.++.. ...+ .... .+..+.|++++..+++.. .
T Consensus 279 ~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~--~ 355 (710)
T 2xdw_A 279 WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL--H 355 (710)
T ss_dssp CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE--E
T ss_pred eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE--E
Confidence 4555566666554 488888877776531 1245799999988742 2333 3333 577899987666666643 5
Q ss_pred CC--eEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEE-E---CCCCEEEEEcCCCc
Q psy4876 533 QN--QLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSA-G---ADETLRLWKIFEKV 587 (609)
Q Consensus 533 dg--~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~-s---~Dg~I~iWdl~~~~ 587 (609)
++ .|.+|++.+++.+..+..+.+.|..++++|++..|+.. + ..++|.+||+.+++
T Consensus 356 ~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 356 DVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 65 46777877888888888888889999999999766533 3 24789999998765
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-13 Score=148.07 Aligned_cols=289 Identities=11% Similarity=0.054 Sum_probs=202.3
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEc----
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWI---- 344 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~s---- 344 (609)
.+..+.++||+ +++++.++.|.+||+.. .....+.++........++|+
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~-------------------------~t~~~v~~i~~G~~P~~ia~s~~~~ 252 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWM-------------------------KEPTTVAEIKIGSEARSIETSKMEG 252 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTS-------------------------SSCCEEEEEECCSEEEEEEECCSTT
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCC-------------------------CCCcEeEEEecCCCCceeEEccccC
Confidence 35578999997 56677889999999962 112334455444557899999
Q ss_pred cCCCEEEEEeC-CCeEEEEeCCCCeeEEEecCC-----------CCceEEEEec---CCEEEEEecCCeEEEEEcCCCCe
Q psy4876 345 QEGYMLGVGTS-LGTVQLWDVSAKKKCRTMDGH-----------DVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDH 409 (609)
Q Consensus 345 pdg~~Lasgs~-dg~I~iwd~~~~~~~~~l~~h-----------~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~ 409 (609)
|||++++++.. ++.|.|+|..+.+.+..+... ..++..+... +.+++....+|.|.++|......
T Consensus 253 pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~ 332 (567)
T 1qks_A 253 WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN 332 (567)
T ss_dssp CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred CCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc
Confidence 69998887765 489999999999888776521 2256777662 45666667789999999986542
Q ss_pred eEEEEccCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCCCccceEeecC-----CcccEEEEEEcCCCCcEEE
Q psy4876 410 KVALLQNHTQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVPGQHTFSTQPIHSLSR-----HQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~-----h~~~V~~l~~sp~~~~lla 483 (609)
.............++.|+|+|++|+++. .++.|.++|+.++ +.+..+.. |.+.-..+ ++|++..+++
T Consensus 333 ~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~------kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~ 405 (567)
T 1qks_A 333 LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG------KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWA 405 (567)
T ss_dssp EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT------EEEEEEECSSSSBCCTTCEEE-EETTTEEEEE
T ss_pred ceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC------cEEEEEeccCcCCCCccceee-ECCCCCcEEE
Confidence 2222223445677899999999987766 5789999999987 44433322 33222122 5887667777
Q ss_pred EEeccCCCeEEEEECCC-------CceeEEEcCCC-CeEEEEEcCCCCeEEEEEec-C----CCeEEEEECCCC-----c
Q psy4876 484 SGGGTADRHIYFWNVSS-------GACLDSIDTKS-QVCALLWNSDYKELVSAHGF-A----QNQLIIWKYPSL-----V 545 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t-------~~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~-~----dg~I~Iwd~~~~-----~ 545 (609)
++. -.++.|.++|..+ .+.+.++...+ .-.-+..+|+++++++.... . .++|.|||+.+. .
T Consensus 406 t~~-~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~ 484 (567)
T 1qks_A 406 TSH-MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD 484 (567)
T ss_dssp EEB-SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC
T ss_pred eCC-CCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccC
Confidence 653 2468999999987 66788887654 33557889999999985411 1 459999999876 2
Q ss_pred e-EEEEe--------CCCCCEEEEEEeCCCCEEEEEE-----CCCCEEEEEcCCCccchhh
Q psy4876 546 K-VAELH--------GHSARVLNLAMSPDETTVLSAG-----ADETLRLWKIFEKVKSKKK 592 (609)
Q Consensus 546 ~-~~~l~--------~h~~~V~~l~~spdg~~L~s~s-----~Dg~I~iWdl~~~~~~~k~ 592 (609)
. +..+. .-..++.++.|+++|+.|..+. .++.|.|+|..+.+..+..
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i 545 (567)
T 1qks_A 485 PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVI 545 (567)
T ss_dssp CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred CCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEe
Confidence 2 23332 1235799999999999877653 3799999999987765443
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-14 Score=162.44 Aligned_cols=239 Identities=10% Similarity=-0.052 Sum_probs=170.0
Q ss_pred CCCCeEEEEEccCCCEEEEE--eCCCeEEEEeCCCCeeEEEecCCCCceE---------EEEe----cCCE-EEEEe-cC
Q psy4876 334 GNENVCSVAWIQEGYMLGVG--TSLGTVQLWDVSAKKKCRTMDGHDVRVG---------ALAW----NTYI-LSSGS-RC 396 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasg--s~dg~I~iwd~~~~~~~~~l~~h~~~V~---------~l~~----~~~~-L~sgs-~d 396 (609)
|...+..++|++++-+++.. ..++...||....+...+.+..|...+. ...| +++. |+.++ .+
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~ 101 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD 101 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCC
Confidence 78899999999876666666 5578999999765666777777766655 5545 3666 55554 35
Q ss_pred CeEEEEEcC--C-CCeeEEEEcc-----CCCCeEEEEEccCCCEEEEEeCC----------CcEEEEeCCC------CCC
Q psy4876 397 GNIVHHDVR--S-RDHKVALLQN-----HTQEVCGLKWSPDGRYLASGGND----------NLLNIWSGVP------GQH 452 (609)
Q Consensus 397 g~I~iwd~~--~-~~~~~~~~~~-----h~~~V~~l~~spdg~~lasgs~D----------g~I~iwd~~~------~~~ 452 (609)
..|.++++. . + ....+.. |...+.+++|+|||+.|++++.| ..|++||+.+ +
T Consensus 102 ~~l~~~~~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-- 177 (662)
T 3azo_A 102 QRLYAFEPDAPGGA--VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS-- 177 (662)
T ss_dssp CCEEEECTTSTTCC--CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG--
T ss_pred CeEEEEcCCCCCCC--CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC--
Confidence 677777776 2 3 2444554 66788999999999999998877 5899999987 4
Q ss_pred CCCccceEeec-CCcccEEEEEEcCCCCcEEEEEecc-----CCCeEEEEECC-CC---ceeEEEcC-CCCeEEEEEcCC
Q psy4876 453 TFSTQPIHSLS-RHQAAVKAIAWCPWSPNVLASGGGT-----ADRHIYFWNVS-SG---ACLDSIDT-KSQVCALLWNSD 521 (609)
Q Consensus 453 ~~~~~~~~~~~-~h~~~V~~l~~sp~~~~llasggGs-----~Dg~I~iwd~~-t~---~~~~~~~~-~~~v~sl~~s~~ 521 (609)
. ...+. .+...+..++|+|||+.|+++.... ....|++||+. ++ +....... ...+..+.|+||
T Consensus 178 ----~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spd 252 (662)
T 3azo_A 178 ----A-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPD 252 (662)
T ss_dssp ----G-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTT
T ss_pred ----c-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCC
Confidence 2 23444 5566788899999998776655210 12589999999 57 44444443 468999999999
Q ss_pred CCeEEEEEecCCC--eEEEEECCCCceEEEEeCCCCC--------EEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 522 YKELVSAHGFAQN--QLIIWKYPSLVKVAELHGHSAR--------VLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 522 g~~l~~~sG~~dg--~I~Iwd~~~~~~~~~l~~h~~~--------V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
|+.+++ +..++ .|.+||..+++....+..+... +..++|+|++.++++++. +.++||.+.
T Consensus 253 g~l~~~--~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 253 GSLIVA--TDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp SCEEEE--ECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred CeEEEE--ECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 995444 33566 6777777666654333333222 567899999999999998 999999543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-13 Score=137.13 Aligned_cols=240 Identities=11% Similarity=0.003 Sum_probs=167.7
Q ss_pred CeEEEEEccCCCEEE-EEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEE
Q psy4876 337 NVCSVAWIQEGYMLG-VGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 337 ~V~~v~~spdg~~La-sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~ 413 (609)
...+++++++|++++ +...++.|.+||..+.........+...+.+++++ +.++++.. ++.|.+||..... ...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~--~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN--QTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC--CEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce--Eee
Confidence 788999999998666 44677899999986654332222344567788884 56555554 8899999987652 222
Q ss_pred Ec-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCe
Q psy4876 414 LQ-NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH 492 (609)
Q Consensus 414 ~~-~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~ 492 (609)
+. .....+.+++++++|+++++...++.|.+|+..+. ............+.++++++++. ++++.. .++.
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~------~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~~ 172 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK------TQTVLPFTGLNDPDGVAVDNSGN-VYVTDT--DNNR 172 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC------SCEECCCCSCCSCCCEEECTTCC-EEEEEG--GGTE
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCc------eeEeeccccCCCceeEEEeCCCC-EEEEEC--CCCE
Confidence 32 23367899999999998887777889999976544 22222222334578899999885 666652 5789
Q ss_pred EEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEE
Q psy4876 493 IYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571 (609)
Q Consensus 493 I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s 571 (609)
|.+||...+......... ..+..++++++|..+++ ...++.|.+|+............+...+.+++++++|.++++
T Consensus 173 i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~--~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 250 (270)
T 1rwi_B 173 VVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVT--EHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVA 250 (270)
T ss_dssp EEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEE--ETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEE
T ss_pred EEEEecCCCceEeecccCCCCceEEEECCCCCEEEE--ECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEE
Confidence 999998876654432222 57899999999965555 346889999998665443322234467899999999998888
Q ss_pred EECCCCEEEEEcCCCccch
Q psy4876 572 AGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 572 ~s~Dg~I~iWdl~~~~~~~ 590 (609)
...++.|+++++...+..+
T Consensus 251 ~~~~~~v~~~~~~~~~~~~ 269 (270)
T 1rwi_B 251 DRGNDRVVKLTSLEHHHHH 269 (270)
T ss_dssp EGGGTEEEEECCCGGGSCC
T ss_pred ECCCCEEEEEcCCCccccC
Confidence 8899999999998766543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-13 Score=135.35 Aligned_cols=223 Identities=10% Similarity=0.060 Sum_probs=165.8
Q ss_pred CCCCeEEEEEccCCC-EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCee
Q psy4876 334 GNENVCSVAWIQEGY-MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 334 h~~~V~~v~~spdg~-~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
+.....+++|+|+|+ +++++..++.|.+||..++ ...+..+...+.++++ ++.++++...++.|.+||..++. .
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~-~ 102 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE-W 102 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC-E
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc-E
Confidence 456788999999998 7788888999999999876 6667777888999999 46777776667899999997664 2
Q ss_pred EEEEccC----CCCeEEEEEccCCCEEEEE----e-------------CCCcEEEEeCCCCCCCCCccceEeecCCcccE
Q psy4876 411 VALLQNH----TQEVCGLKWSPDGRYLASG----G-------------NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAV 469 (609)
Q Consensus 411 ~~~~~~h----~~~V~~l~~spdg~~lasg----s-------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V 469 (609)
....... ...+..++++|+|+++++. + ..+.|+.++.. + .+..+..+....
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-------~~~~~~~~~~~~ 174 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-------TLSAPIRDRVKP 174 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-------CEEEEECCCSSE
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C-------CEEEeecCCCCC
Confidence 2222211 2346789999999988873 2 13456666655 3 233344566678
Q ss_pred EEEEEcCCCCcEEEEEeccCCCeEEEEECC-CCce---eEEEc-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q psy4876 470 KAIAWCPWSPNVLASGGGTADRHIYFWNVS-SGAC---LDSID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL 544 (609)
Q Consensus 470 ~~l~~sp~~~~llasggGs~Dg~I~iwd~~-t~~~---~~~~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~ 544 (609)
..++|+|++..+ ++. +.++.|.+||+. ++.. ...+. ....+..++++++|+.+++. ++.|.+|+.. +
T Consensus 175 ~gi~~s~dg~~l-v~~--~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~----~~~v~~~~~~-g 246 (296)
T 3e5z_A 175 NGLAFLPSGNLL-VSD--TGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA----GDGVHVLTPD-G 246 (296)
T ss_dssp EEEEECTTSCEE-EEE--TTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE----TTEEEEECTT-S
T ss_pred ccEEECCCCCEE-EEe--CCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc----CCeEEEECCC-C
Confidence 899999999766 655 468999999997 5655 33332 22356789999999866552 7899999976 7
Q ss_pred ceEEEEeCCCCCEEEEEE-eCCCCEEEEEECCC
Q psy4876 545 VKVAELHGHSARVLNLAM-SPDETTVLSAGADE 576 (609)
Q Consensus 545 ~~~~~l~~h~~~V~~l~~-spdg~~L~s~s~Dg 576 (609)
+.+..+..+.. +.+++| +|+++.|++++.++
T Consensus 247 ~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 247 DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp CEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence 78888887777 999999 58999999888764
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=152.54 Aligned_cols=240 Identities=12% Similarity=0.066 Sum_probs=162.2
Q ss_pred CeEEEEEccCCCEEEEEeCC---CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 337 NVCSVAWIQEGYMLGVGTSL---GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
.+.+++|+|||++|+.+... ..|.+||+.+++......++......+.| +++.|+.++.++.|++||+.++. ..
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~-~~ 115 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE-EQ 115 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC-EE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC-cE
Confidence 37788999999998877553 37889999888765544433333333667 68899999999999999998764 33
Q ss_pred EEEccCCCCeEE-------------------EEEccCCCEEEEE-----eCCCcEEEEeCCCCCCCCCccceEeecCCcc
Q psy4876 412 ALLQNHTQEVCG-------------------LKWSPDGRYLASG-----GNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA 467 (609)
Q Consensus 412 ~~~~~h~~~V~~-------------------l~~spdg~~lasg-----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 467 (609)
.....+...... +.|+|+++.++.+ ..+..|++||+.++ +.. .+..+..
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g------~~~-~~~~~~~ 188 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG------ELE-VIHQDTA 188 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC------CEE-EEEEESS
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCC------cEE-eeccCCc
Confidence 333334332222 3567777766654 35678999999876 322 3334667
Q ss_pred cEEEEEEcC-CCCcEEEEEeccCC----CeEEEEECCCCceeEEEcC--CCCeEEEEEcCCCCeEEEEEec-CC--CeEE
Q psy4876 468 AVKAIAWCP-WSPNVLASGGGTAD----RHIYFWNVSSGACLDSIDT--KSQVCALLWNSDYKELVSAHGF-AQ--NQLI 537 (609)
Q Consensus 468 ~V~~l~~sp-~~~~llasggGs~D----g~I~iwd~~t~~~~~~~~~--~~~v~sl~~s~~g~~l~~~sG~-~d--g~I~ 537 (609)
.+..+.|+| ++..++++..+ .. ..|.+||+..++....... ...+..+.|+|+|+.|+.++.. .. +.|+
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~-~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 189 WLGHPIYRPFDDSTVGFCHEG-PHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp CEEEEEEETTEEEEEEEEECS-CSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred ccccceECCCCCCEEEEEecC-CCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 789999999 67656555421 22 5799999876654333232 1257889999999988776421 12 4599
Q ss_pred EEECCCCceEEEEeCCCCCEEEEEEeC-CCCEEEEEE----------------CCCCEEEEEcCCCcc
Q psy4876 538 IWKYPSLVKVAELHGHSARVLNLAMSP-DETTVLSAG----------------ADETLRLWKIFEKVK 588 (609)
Q Consensus 538 Iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~s~s----------------~Dg~I~iWdl~~~~~ 588 (609)
+||+.+++....... .. .. +.|+| ||++|++++ .+..|++||+.++..
T Consensus 268 ~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 268 KANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp EECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred EEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 999988765433222 12 33 89999 999888765 347899999987653
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-11 Score=124.34 Aligned_cols=271 Identities=11% Similarity=0.007 Sum_probs=185.6
Q ss_pred eeEEEEEecCCC-eEEEEc-CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFN-VLAVAL-GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~-lla~s~-dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
..+.+|++++++ ++.+.. ++.|.+||... ..... .+. +...+.++++.++
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~--------------------------~~~~~-~~~~~~~~~~~i~~~~~ 67 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLDG--------------------------KITEY-PLPTPDAKVMCLTISSD 67 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC--------------------------CEEEE-ECSSTTCCEEEEEECTT
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCCC--------------------------CeEEe-cCCcccCceeeEEECCC
Confidence 357789999987 554554 68899999763 11111 112 4567899999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCee-EEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKK-CRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
|.++++...++.|..||.. ++. ...+......+..++++ +.++++...++.|.+||. ++.........+...+.+
T Consensus 68 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~ 145 (299)
T 2z2n_A 68 GEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSF 145 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred CCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCce
Confidence 9888777768899999986 332 22222345678889884 667777667889999998 443222223334567899
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceE-eecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIH-SLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA 502 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~ 502 (609)
+++.++|.++++...++.|.+||. ++ .... .+..+...+.++++++++. ++++. ..++.|.+||. +++
T Consensus 146 i~~~~~g~l~v~~~~~~~i~~~~~-~g------~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~--~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 146 ITLGSDNALWFTENQNNAIGRITE-SG------DITEFKIPTPASGPVGITKGNDDA-LWFVE--IIGNKIGRITT-SGE 214 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECT-TC------CEEEEECSSTTCCEEEEEECTTSS-EEEEE--TTTTEEEEECT-TCC
T ss_pred EEEcCCCCEEEEeCCCCEEEEEcC-CC------cEEEeeCCCCCCcceeEEECCCCC-EEEEc--cCCceEEEECC-CCc
Confidence 999999988887777789999998 55 2221 2333455688999999875 66554 25789999999 666
Q ss_pred eeEE-Ec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEE--eCCCCCEEEEEEeCCCCEEEEEECCCCE
Q psy4876 503 CLDS-ID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL--HGHSARVLNLAMSPDETTVLSAGADETL 578 (609)
Q Consensus 503 ~~~~-~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l--~~h~~~V~~l~~spdg~~L~s~s~Dg~I 578 (609)
.... .. ....+.+++++++|..+++ ...++.|.+||. ++. +..+ ..+...+.++++ ++|.++++.. .+.|
T Consensus 215 ~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l 288 (299)
T 2z2n_A 215 ITEFKIPTPNARPHAITAGAGIDLWFT--EWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKI 288 (299)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEE--ETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEE
T ss_pred EEEEECCCCCCCceeEEECCCCCEEEe--ccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcE
Confidence 4432 12 2357899999999985554 335789999998 443 3333 345567999999 8888776654 5667
Q ss_pred EEEEcCCC
Q psy4876 579 RLWKIFEK 586 (609)
Q Consensus 579 ~iWdl~~~ 586 (609)
..++..+.
T Consensus 289 ~~~~~~~~ 296 (299)
T 2z2n_A 289 GKLTLIKD 296 (299)
T ss_dssp EEEEEC--
T ss_pred EEEEcCcc
Confidence 77776543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-12 Score=135.23 Aligned_cols=235 Identities=13% Similarity=0.101 Sum_probs=168.9
Q ss_pred eEEEEEecCCC-eEEEEcCC-------------------------eEEEEeCCCCCCCceEEecCCcccccccccccccc
Q psy4876 271 YLNLIDWSHFN-VLAVALGG-------------------------SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNR 324 (609)
Q Consensus 271 ~v~~l~wsp~~-lla~s~dg-------------------------~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (609)
.+..|++++++ ++++..++ .|++||..+ +
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-------------------------g 79 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN-------------------------A 79 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT-------------------------C
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC-------------------------C
Confidence 47889999987 55554443 689999876 5
Q ss_pred ceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe-eEEEe---------cCCCCceEEEEec---CCEEE
Q psy4876 325 AIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK-KCRTM---------DGHDVRVGALAWN---TYILS 391 (609)
Q Consensus 325 ~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~-~~~~l---------~~h~~~V~~l~~~---~~~L~ 391 (609)
.+.......+-..+..|+++++|+++++...++.|++||..... .+..+ .++-.....++++ +.+++
T Consensus 80 ~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv 159 (329)
T 3fvz_A 80 EILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFV 159 (329)
T ss_dssp CEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEE
T ss_pred eEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEE
Confidence 54332221244578999999999988888888999999986542 55555 3445578899995 46666
Q ss_pred EEe-cCCeEEEEEcCCCCeeEEEEcc----------CCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCCCCCCccce
Q psy4876 392 SGS-RCGNIVHHDVRSRDHKVALLQN----------HTQEVCGLKWSPD-GRYLASGGNDNLLNIWSGVPGQHTFSTQPI 459 (609)
Q Consensus 392 sgs-~dg~I~iwd~~~~~~~~~~~~~----------h~~~V~~l~~spd-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~ 459 (609)
+.+ .++.|.+||.. + ..+..+.. +-....+|+++|+ +.++++...++.|++||..++ +.+
T Consensus 160 ~d~~~~~~I~~~~~~-g-~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G------~~~ 231 (329)
T 3fvz_A 160 SDGYCNSRIVQFSPS-G-KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK------EFV 231 (329)
T ss_dssp EECSSCCEEEEECTT-S-CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC------CEE
T ss_pred EeCCCCCeEEEEcCC-C-CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC------cEE
Confidence 765 68999999954 3 34444432 2234899999998 777777778899999999877 555
Q ss_pred Eee--cCCcccEEEEEEcCCCCcEEEEEe-----ccCCCeEEEEECCCCceeEEEc----CCCCeEEEEEcCCCCeEEEE
Q psy4876 460 HSL--SRHQAAVKAIAWCPWSPNVLASGG-----GTADRHIYFWNVSSGACLDSID----TKSQVCALLWNSDYKELVSA 528 (609)
Q Consensus 460 ~~~--~~h~~~V~~l~~sp~~~~llasgg-----Gs~Dg~I~iwd~~t~~~~~~~~----~~~~v~sl~~s~~g~~l~~~ 528 (609)
..+ ..+...+.+++|+| + .++++.+ ...+..|++||+.+++.+..+. ....+..++++++|..+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyva- 308 (329)
T 3fvz_A 232 REIKHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIG- 308 (329)
T ss_dssp EEECCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEE-
T ss_pred EEEeccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEE-
Confidence 555 34556788999999 3 3444332 1235689999999999998884 2346899999999954444
Q ss_pred EecCCCeEEEEECC
Q psy4876 529 HGFAQNQLIIWKYP 542 (609)
Q Consensus 529 sG~~dg~I~Iwd~~ 542 (609)
...++.|++|+..
T Consensus 309 -d~~~~~I~~~~~~ 321 (329)
T 3fvz_A 309 -DAHTNTVWKFTLT 321 (329)
T ss_dssp -ESSSCCEEEEEEE
T ss_pred -ECCCCEEEEEeCC
Confidence 4478899999864
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.3e-13 Score=132.92 Aligned_cols=232 Identities=11% Similarity=0.136 Sum_probs=163.9
Q ss_pred eEEEEEecCCC-eEEE-EcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeee----cCCCCeEEEEEc
Q psy4876 271 YLNLIDWSHFN-VLAV-ALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL----EGNENVCSVAWI 344 (609)
Q Consensus 271 ~v~~l~wsp~~-lla~-s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~h~~~V~~v~~s 344 (609)
....|++++++ ++++ ..++.|++||... .....+... .+...+.++++.
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-------------------------~~~~~~~~~~~~~~~~~~p~~i~~~ 85 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-------------------------RFKFQFGECGKRDSQLLYPNRVAVV 85 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTS-------------------------CEEEEECCBSSSTTCBSSEEEEEEE
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCCC-------------------------cEEEEecccCCCcccccCceEEEEE
Confidence 36778999986 4444 4578999999764 221111110 133568899994
Q ss_pred -cCCCEEEEEeC-CCeEEEEeCCCCeeEEEecC-CCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEc--cC
Q psy4876 345 -QEGYMLGVGTS-LGTVQLWDVSAKKKCRTMDG-HDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQ--NH 417 (609)
Q Consensus 345 -pdg~~Lasgs~-dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~--~h 417 (609)
+++.++++... ++.|.+|| .+++.+..+.. +...+..+++ +++++++...++.|.+||.... .+..+. .+
T Consensus 86 ~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~ 162 (286)
T 1q7f_A 86 RNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN--VLHKFGCSKH 162 (286)
T ss_dssp TTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEEEEECTTT
T ss_pred cCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC--EEEEeCCCCc
Confidence 67766665543 78999999 56677776643 4467889999 4677777778899999997532 444443 45
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC--cccEEEEEEcCCCCcEEEEEeccCCC-eEE
Q psy4876 418 TQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH--QAAVKAIAWCPWSPNVLASGGGTADR-HIY 494 (609)
Q Consensus 418 ~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~llasggGs~Dg-~I~ 494 (609)
...+.+|+++++|+++++...++.|++||... ..+..+..+ ...+..++++++| .++++.. .++ .|.
T Consensus 163 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-------~~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~--~~~~~i~ 232 (286)
T 1q7f_A 163 LEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-------QYLRQIGGEGITNYPIGVGINSNG-EILIADN--HNNFNLT 232 (286)
T ss_dssp CSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-------CEEEEESCTTTSCSEEEEEECTTC-CEEEEEC--SSSCEEE
T ss_pred cCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-------CEEEEEccCCccCCCcEEEECCCC-CEEEEeC--CCCEEEE
Confidence 56789999999999888877889999999753 344445333 3578999999988 5666653 454 999
Q ss_pred EEECCCCceeEEEcCC---CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q psy4876 495 FWNVSSGACLDSIDTK---SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL 544 (609)
Q Consensus 495 iwd~~t~~~~~~~~~~---~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~ 544 (609)
+||. +++.+..+..+ ..+.+++++++|+.+++ . .++.|++|++...
T Consensus 233 ~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~--~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 233 IFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-S--KDYRLYIYRYVQL 281 (286)
T ss_dssp EECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-E--TTTEEEEEECSCC
T ss_pred EECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-C--CCCeEEEEEcccc
Confidence 9995 56777666543 24789999999975555 3 5899999998654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-12 Score=141.50 Aligned_cols=268 Identities=10% Similarity=0.050 Sum_probs=193.3
Q ss_pred EEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q psy4876 283 LAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLW 362 (609)
Q Consensus 283 la~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iw 362 (609)
++...++.|.++|..+ +++. .++.....+..+.|+|||++|++++.++.|.+|
T Consensus 171 V~~~~~~~V~viD~~t-------------------------~~v~--~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~vi 223 (567)
T 1qks_A 171 VTLRDAGQIALIDGST-------------------------YEIK--TVLDTGYAVHISRLSASGRYLFVIGRDGKVNMI 223 (567)
T ss_dssp EEETTTTEEEEEETTT-------------------------CCEE--EEEECSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred EEeCCCCeEEEEECCC-------------------------CeEE--EEEeCCCCccceEECCCCCEEEEEcCCCeEEEE
Confidence 3445578999999988 5443 334434567799999999999999999999999
Q ss_pred eCC--CCeeEEEecCCCCceEEEEec------CCEEEEEe-cCCeEEEEEcCCCCeeEEEEcc----------C-CCCeE
Q psy4876 363 DVS--AKKKCRTMDGHDVRVGALAWN------TYILSSGS-RCGNIVHHDVRSRDHKVALLQN----------H-TQEVC 422 (609)
Q Consensus 363 d~~--~~~~~~~l~~h~~~V~~l~~~------~~~L~sgs-~dg~I~iwd~~~~~~~~~~~~~----------h-~~~V~ 422 (609)
|+. +++.+..+.... ....++|+ +++++++. .++.|.++|..+.+ .+..+.. | ...+.
T Consensus 224 D~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~-~~~~i~~~~~~~~~~~~~p~~rva 301 (567)
T 1qks_A 224 DLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVA 301 (567)
T ss_dssp ETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEE
T ss_pred ECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc-EEEEEeccccccccccccCCCceE
Confidence 996 778888777543 34667775 56666655 56999999998864 4544432 1 12678
Q ss_pred EEEEccCCCEE-EEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 423 GLKWSPDGRYL-ASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 423 ~l~~spdg~~l-asgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
.+..++++..+ +....+|.|.++|...... ..+..+ .......++.|+|++++++++.. .++.|.++|+.++
T Consensus 302 ~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~----~~v~~i-~~~~~~~d~~~~pdgr~~~va~~--~sn~V~ViD~~t~ 374 (567)
T 1qks_A 302 AILASHYRPEFIVNVKETGKILLVDYTDLNN----LKTTEI-SAERFLHDGGLDGSHRYFITAAN--ARNKLVVIDTKEG 374 (567)
T ss_dssp EEEECSSSSEEEEEETTTTEEEEEETTCSSE----EEEEEE-ECCSSEEEEEECTTSCEEEEEEG--GGTEEEEEETTTT
T ss_pred EEEEcCCCCEEEEEecCCCeEEEEecCCCcc----ceeeee-eccccccCceECCCCCEEEEEeC--CCCeEEEEECCCC
Confidence 89999976654 4445679999999876521 112222 23345678999999988888774 6889999999999
Q ss_pred ceeEEEcC-CCCe---EEEE-EcCCCCeEEEEEecCCCeEEEEECCC-------CceEEEEeCCCCCEEEEEEeCCCCEE
Q psy4876 502 ACLDSIDT-KSQV---CALL-WNSDYKELVSAHGFAQNQLIIWKYPS-------LVKVAELHGHSARVLNLAMSPDETTV 569 (609)
Q Consensus 502 ~~~~~~~~-~~~v---~sl~-~s~~g~~l~~~sG~~dg~I~Iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~L 569 (609)
+.+..+.. .... ..+. ++|++..++++....++.|.++|..+ ++.+..+......-..|.++|++++|
T Consensus 375 kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l 454 (567)
T 1qks_A 375 KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYL 454 (567)
T ss_dssp EEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEE
T ss_pred cEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeE
Confidence 98887766 3211 1222 58886666554434578999999987 77888887654444567899999999
Q ss_pred EEEEC-------CCCEEEEEcCCC
Q psy4876 570 LSAGA-------DETLRLWKIFEK 586 (609)
Q Consensus 570 ~s~s~-------Dg~I~iWdl~~~ 586 (609)
.+... .++|.++|+.+.
T Consensus 455 ~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 455 YVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEecCCCCCcccCceEEEEECCcc
Confidence 88763 359999999876
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.6e-14 Score=159.97 Aligned_cols=241 Identities=9% Similarity=-0.046 Sum_probs=165.6
Q ss_pred CCCCeEEEEEccCCCEEEEE-----eCCCeEEEEeCCCCeeEEEecCCCCce--EEEEe--cCCEEEEEecCCe------
Q psy4876 334 GNENVCSVAWIQEGYMLGVG-----TSLGTVQLWDVSAKKKCRTMDGHDVRV--GALAW--NTYILSSGSRCGN------ 398 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasg-----s~dg~I~iwd~~~~~~~~~l~~h~~~V--~~l~~--~~~~L~sgs~dg~------ 398 (609)
|...+.+++|||||++||.+ +.+..|++||+.+++.+. ..+...+ ..++| ++..|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 34468999999999999854 334689999999987641 1122222 67889 6788888888765
Q ss_pred -------EEEEEcCCCCe---eEEEEccCCCCeEEEEEccCCCEEEEEeCCC----cEEEEeCCCCCCCCCccceEeecC
Q psy4876 399 -------IVHHDVRSRDH---KVALLQNHTQEVCGLKWSPDGRYLASGGNDN----LLNIWSGVPGQHTFSTQPIHSLSR 464 (609)
Q Consensus 399 -------I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg----~I~iwd~~~~~~~~~~~~~~~~~~ 464 (609)
|++|++.++.. .+.....|...+.++.|+|||++|+.++.++ .|++||..++ ....+..
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~-------~~~~l~~ 269 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK-------DFRLLVK 269 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-------SCEEEEE
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-------ceEEeec
Confidence 99999987642 2223334556789999999999998887766 6777765544 2344445
Q ss_pred CcccEEEEEEcCCCCcEEEEEe-ccCCCeEEEEECCCCce---eEEEcCC--CCeEEEEEcCCCCeEEEEEecCCCeEEE
Q psy4876 465 HQAAVKAIAWCPWSPNVLASGG-GTADRHIYFWNVSSGAC---LDSIDTK--SQVCALLWNSDYKELVSAHGFAQNQLII 538 (609)
Q Consensus 465 h~~~V~~l~~sp~~~~llasgg-Gs~Dg~I~iwd~~t~~~---~~~~~~~--~~v~sl~~s~~g~~l~~~sG~~dg~I~I 538 (609)
+...+....| +++. +++... +..++.|.+||+.++.. ...+... ..+..++|+ ++..+++ ...++..+|
T Consensus 270 ~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~--~~~dg~~~l 344 (695)
T 2bkl_A 270 GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLE--YLKDATSEV 344 (695)
T ss_dssp CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEE--EEETTEEEE
T ss_pred CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEE--EEECCEEEE
Confidence 5556666667 6676 666542 11368999999987763 3334332 357888888 5555555 336888777
Q ss_pred EECC-CCceEEEEeCC-CCCEEEEEEeCCCCEEEEEE----CCCCEEEEEcCCCcc
Q psy4876 539 WKYP-SLVKVAELHGH-SARVLNLAMSPDETTVLSAG----ADETLRLWKIFEKVK 588 (609)
Q Consensus 539 wd~~-~~~~~~~l~~h-~~~V~~l~~spdg~~L~s~s----~Dg~I~iWdl~~~~~ 588 (609)
|.+. .+..+..+..+ .+.|..++++|++..|+... .+++|++||+.+++.
T Consensus 345 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 345 RVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 7654 45566666655 66788899999998776332 347899999987653
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-12 Score=148.14 Aligned_cols=241 Identities=11% Similarity=0.025 Sum_probs=168.6
Q ss_pred eeEEEEEecCCC-eEEEE-c-CC----eEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEE
Q psy4876 270 YYLNLIDWSHFN-VLAVA-L-GG----SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVA 342 (609)
Q Consensus 270 ~~v~~l~wsp~~-lla~s-~-dg----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~ 342 (609)
+.+..++||||+ .|+.+ . +| .|++||+.+ +..... .+. ...+.+++
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t-------------------------g~~~~~-~~~-~~~~~~~~ 177 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG-------------------------AKELPD-VLE-RVKFSCMA 177 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT-------------------------TEEEEE-EEE-EECSCCEE
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC-------------------------CCCCcc-ccc-CcccceEE
Confidence 568899999997 55533 2 23 899999998 554432 221 22367899
Q ss_pred EccCCCEEEEEeCCCe----------------EEEEeCCCCee--EEEe--cCCCCceEEEEe--cCCEEEEEec-----
Q psy4876 343 WIQEGYMLGVGTSLGT----------------VQLWDVSAKKK--CRTM--DGHDVRVGALAW--NTYILSSGSR----- 395 (609)
Q Consensus 343 ~spdg~~Lasgs~dg~----------------I~iwd~~~~~~--~~~l--~~h~~~V~~l~~--~~~~L~sgs~----- 395 (609)
|+|||+.|+.++.++. |.+|++.+++. ...+ ..|...+..+.| ++++|+.++.
T Consensus 178 wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 257 (710)
T 2xdw_A 178 WTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDP 257 (710)
T ss_dssp ECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSS
T ss_pred EEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCC
Confidence 9999999999888765 99999988652 2222 335566788888 5777777664
Q ss_pred CCeEEEEEcCC------CCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCC----cEEEEeCCCCCCCCCccceEeecCC
Q psy4876 396 CGNIVHHDVRS------RDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDN----LLNIWSGVPGQHTFSTQPIHSLSRH 465 (609)
Q Consensus 396 dg~I~iwd~~~------~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg----~I~iwd~~~~~~~~~~~~~~~~~~h 465 (609)
+..|++||+.+ +......+..+...+.. .|+++|..|+..+.++ .|.+||+.++.. .....+..|
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~----~~~~~l~~~ 332 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE----SKWKVLVPE 332 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG----GGCEEEECC
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc----ccceeccCC
Confidence 56899999986 43235556666666655 5889999888776643 599999987621 123444445
Q ss_pred cc--cEEEEEEcCCCCcEEEEEeccCCC--eEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEE--ecCCCeEEE
Q psy4876 466 QA--AVKAIAWCPWSPNVLASGGGTADR--HIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAH--GFAQNQLII 538 (609)
Q Consensus 466 ~~--~V~~l~~sp~~~~llasggGs~Dg--~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~s--G~~dg~I~I 538 (609)
.. .+..++|++++ .++++.. .|+ .|++||+.+|+.+..+..+ ..+..+.+++++..++... ....+.|++
T Consensus 333 ~~~~~~~~~~~~~~~-~lv~~~~--~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~ 409 (710)
T 2xdw_A 333 HEKDVLEWVACVRSN-FLVLCYL--HDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYH 409 (710)
T ss_dssp CSSCEEEEEEEETTT-EEEEEEE--ETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEE
T ss_pred CCCCeEEEEEEEcCC-EEEEEEE--ECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEE
Confidence 43 68889998644 5666653 566 5777888788877777654 4678899999998776542 234678999
Q ss_pred EECCCCc
Q psy4876 539 WKYPSLV 545 (609)
Q Consensus 539 wd~~~~~ 545 (609)
||+.+++
T Consensus 410 ~d~~tg~ 416 (710)
T 2xdw_A 410 CDLTKEE 416 (710)
T ss_dssp EETTSSS
T ss_pred EECCCCc
Confidence 9998876
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.3e-13 Score=138.25 Aligned_cols=229 Identities=10% Similarity=0.084 Sum_probs=150.4
Q ss_pred EEEEEecCCC-eEE-EEcC---C--eEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEc
Q psy4876 272 LNLIDWSHFN-VLA-VALG---G--SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWI 344 (609)
Q Consensus 272 v~~l~wsp~~-lla-~s~d---g--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~s 344 (609)
+..+.||||+ .|+ ++.+ + .|++|++.+ +....+... .. +.+++|+
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~-------------------------g~~~~l~~~--~~-~~~~~ws 112 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLET-------------------------LSSKKILEA--KN-IRSLEWN 112 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT-------------------------TEEEEEEEE--SE-EEEEEEC
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCC-------------------------CceEEEEcC--CC-ccceeEC
Confidence 5678999997 444 4432 3 488888877 555555443 23 9999999
Q ss_pred cCCCEEEEEeCC---------------------------CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEec
Q psy4876 345 QEGYMLGVGTSL---------------------------GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSR 395 (609)
Q Consensus 345 pdg~~Lasgs~d---------------------------g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~ 395 (609)
|||+.|+.++.+ ..|.+||+.+++.+..+.. . .+..+.| ++ +++++..
T Consensus 113 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~ 189 (347)
T 2gop_A 113 EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPH 189 (347)
T ss_dssp TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEEC
T ss_pred CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEec
Confidence 999999887642 5799999998877455554 3 7788888 45 6666655
Q ss_pred CC-------eEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCC--------CcEEEEeCCCCCCCCCccceE
Q psy4876 396 CG-------NIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGND--------NLLNIWSGVPGQHTFSTQPIH 460 (609)
Q Consensus 396 dg-------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~D--------g~I~iwd~~~~~~~~~~~~~~ 460 (609)
++ ...+|.+.++ . ...+..+ ..+..+ +|||++|+.++.+ ..|++|| ++ +...
T Consensus 190 ~~~~~~~~~~~~l~~~d~~-~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~------~~~~ 256 (347)
T 2gop_A 190 REIIPQYFKFWDIYIWEDG-K-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK------EVMG 256 (347)
T ss_dssp CCSSCCSSCCEEEEEEETT-E-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS------CEEE
T ss_pred ccccccccccccEEEeCCC-c-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC------ceEe
Confidence 42 3344444433 2 3334334 455544 9999999887754 3688888 44 3333
Q ss_pred eecCCcccEEE-EEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeE-EE
Q psy4876 461 SLSRHQAAVKA-IAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQL-II 538 (609)
Q Consensus 461 ~~~~h~~~V~~-l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I-~I 538 (609)
....+...+.. +.|+ ++ +++++. .++.+++| +.+++....+.....+.++.|++ ..+++.. .++.. .|
T Consensus 257 l~~~~~~~~~~~~~~s-dg--~~~~~~--~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~--~~~~~~~l 326 (347)
T 2gop_A 257 ILDEVDRGVGQAKIKD-GK--VYFTLF--EEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKE--TATRLREL 326 (347)
T ss_dssp SSTTCCSEEEEEEEET-TE--EEEEEE--ETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEE--CSSSCCEE
T ss_pred ccccCCcccCCccEEc-Cc--EEEEEe--cCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEc--CCCChHHh
Confidence 34456677886 9999 76 666653 78899999 87777655555666789999999 4555433 34433 66
Q ss_pred EECCCCceEEEEeCCCCC
Q psy4876 539 WKYPSLVKVAELHGHSAR 556 (609)
Q Consensus 539 wd~~~~~~~~~l~~h~~~ 556 (609)
|.+. ++ ...+..|...
T Consensus 327 ~~~~-g~-~~~lt~~n~~ 342 (347)
T 2gop_A 327 FTWD-GE-EKQLTDYNDP 342 (347)
T ss_dssp EEES-SS-EEECCCTTST
T ss_pred eEeC-Cc-EEEeccccHh
Confidence 6655 44 4456655543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5.4e-13 Score=136.88 Aligned_cols=237 Identities=10% Similarity=0.064 Sum_probs=171.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~ 413 (609)
..|.+++|++++..++....++.+++| .++....+..+...+.+++| ++.+++++..++.|.+||..++. ....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-~~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-IKRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-EEEE
Confidence 456778899988777777788899999 35667777778788899999 46777788889999999998764 3333
Q ss_pred EccCCCCeEEEEEccCCCEEEEEeCC----CcEEEEeCCCCCCCCCccceEeec--CCcccEEEEEEcCCCCcEEEEEec
Q psy4876 414 LQNHTQEVCGLKWSPDGRYLASGGND----NLLNIWSGVPGQHTFSTQPIHSLS--RHQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~lasgs~D----g~I~iwd~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~llasggG 487 (609)
...+...+.+++|+++|+++++...+ +.|.+||..++ .....+. .+...+.+++++|++. ++++..+
T Consensus 82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~ 154 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD------NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFR 154 (333)
T ss_dssp EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC------SCEEEECSSSSCCCEEEEEECTTSC-EEEEECC
T ss_pred eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC------EEEEEEccCccCCcccceEECCCCC-EEEEecc
Confidence 33566789999999999988877766 68999998876 2221221 2445789999999984 5554421
Q ss_pred ----cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceEEE--------EeCCC
Q psy4876 488 ----TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS-LVKVAE--------LHGHS 554 (609)
Q Consensus 488 ----s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~-~~~~~~--------l~~h~ 554 (609)
...+.|..||..+++..........+..++|+++++.++++. ..++.|.+|+..+ +..+.. +.++
T Consensus 155 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~-~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~- 232 (333)
T 2dg1_A 155 GYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE-TTANRLHRIALEDDGVTIQPFGATIPYYFTGH- 232 (333)
T ss_dssp CBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE-GGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-
T ss_pred ccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEe-CCCCeEEEEEecCCCcCcccccceEEEecCCC-
Confidence 013667777776665544333344688999999999776653 3578999999863 332221 1222
Q ss_pred CCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 555 ARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 555 ~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
..+..++++++|.++++...++.|.+|+...
T Consensus 233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g 263 (333)
T 2dg1_A 233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG 263 (333)
T ss_dssp SEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEECCCC
Confidence 4678899999999888888889999999843
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-12 Score=133.03 Aligned_cols=239 Identities=8% Similarity=-0.008 Sum_probs=166.7
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEe-cCCeEEEEEcCCCCeeEEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGS-RCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs-~dg~I~iwd~~~~~~~~~~ 413 (609)
....++.+. +++.+++...++.|.+||..+++.+..+. .......+++ .+..++++. .++.|.+||..+.. ....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~-~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYE-ITGY 120 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTE-EEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCe-EEEE
Confidence 446677774 34455555567899999999999988885 3466778888 333555555 78999999999863 4444
Q ss_pred EccCC-----CCeEEEEEccCCCEEEEEe--CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 414 LQNHT-----QEVCGLKWSPDGRYLASGG--NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 414 ~~~h~-----~~V~~l~~spdg~~lasgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
+.... .....+++ . +..|+++. .++.|.+||+.++ +.+..+... .....++++|+|. +++++.
T Consensus 121 i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~------~~~~~i~~g-~~p~~i~~~~dG~-l~v~~~ 190 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETD------KVVDELTIG-IQPTSLVMDKYNK-MWTITD 190 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTT------EEEEEEECS-SCBCCCEECTTSE-EEEEBC
T ss_pred EEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCC------eEEEEEEcC-CCccceEEcCCCC-EEEEEC
Confidence 44322 14567777 3 44555444 4889999999987 455555433 2346889999885 555543
Q ss_pred ccC--------CCeEEEEECCCCceeEEEcC--CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE--EeCCC
Q psy4876 487 GTA--------DRHIYFWNVSSGACLDSIDT--KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE--LHGHS 554 (609)
Q Consensus 487 Gs~--------Dg~I~iwd~~t~~~~~~~~~--~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~--l~~h~ 554 (609)
+.. .+.|.+||..+++....+.. ......++|+|+++.++++. +.|.+||..+++.... +..+.
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~----~~v~~~d~~t~~~~~~~~~~~~~ 266 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN----NDIWRMPVEADRVPVRPFLEFRD 266 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES----SSEEEEETTCSSCCSSCSBCCCS
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc----cEEEEEECCCCceeeeeeecCCC
Confidence 211 27899999999998877765 34789999999999998852 3899999988765321 12224
Q ss_pred CCEEEEEEeC-CCCEEEEE----ECCCCEEEEEcCCCccchhh
Q psy4876 555 ARVLNLAMSP-DETTVLSA----GADETLRLWKIFEKVKSKKK 592 (609)
Q Consensus 555 ~~V~~l~~sp-dg~~L~s~----s~Dg~I~iWdl~~~~~~~k~ 592 (609)
.....++++| ++.++++. ..++.|.+||.. ++.....
T Consensus 267 ~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 267 TKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp SCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred CceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 6789999999 45555555 568899999998 5544433
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.53 E-value=4e-12 Score=127.82 Aligned_cols=211 Identities=13% Similarity=0.018 Sum_probs=164.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCC-CceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccC-CCCe
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHD-VRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNH-TQEV 421 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h-~~~V 421 (609)
.+++|++++.++.|.+||.++++.+..+..+. ..+.++.+ ++++|+ +.++.|..||. ++ ..+..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G-~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DG-RELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TS-CEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CC-CEEEEEcCCCCccc
Confidence 46789999999999999999999999998776 46777777 678888 45778999999 55 467777654 3578
Q ss_pred EEEEEccCCCEEEEEeC-CCcEEEEeCCCCCCCCCccceEeec------CCcccEEEEEEcCCCCcEEEEEeccCCCeEE
Q psy4876 422 CGLKWSPDGRYLASGGN-DNLLNIWSGVPGQHTFSTQPIHSLS------RHQAAVKAIAWCPWSPNVLASGGGTADRHIY 494 (609)
Q Consensus 422 ~~l~~spdg~~lasgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~llasggGs~Dg~I~ 494 (609)
.++.+.++|+++++.+. ++.|..+|. .+ +.+..+. .+......+++.++|. ++++. ..++.|.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~G------k~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~--~~~~~v~ 149 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KG------EVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPL--FATSEVR 149 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TS------CEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEE--TTTTEEE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CC------CEEEEEeccCCCCcccccccCceECCCCC-EEEEe--cCCCEEE
Confidence 89999999999999887 778888876 44 3333332 1222345667888885 55554 4799999
Q ss_pred EEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCC------CCEEEEEEeCCCCE
Q psy4876 495 FWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHS------ARVLNLAMSPDETT 568 (609)
Q Consensus 495 iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~------~~V~~l~~spdg~~ 568 (609)
.||.. |+.+..+.....+.++...++++.+++ +..++.|..+|..+++.+.++..+. ..+..++..++|.+
T Consensus 150 ~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~--~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i 226 (276)
T 3no2_A 150 EIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVA--CGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL 226 (276)
T ss_dssp EECTT-SCEEEEEECSSCCCEEEECTTSCEEEE--CBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred EECCC-CCEEEEEECCCCccceeEcCCCCEEEE--eCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence 99998 999999988777778889999999887 4467899999999999999886432 23788899999998
Q ss_pred EEEEE
Q psy4876 569 VLSAG 573 (609)
Q Consensus 569 L~s~s 573 (609)
+++..
T Consensus 227 ~v~~~ 231 (276)
T 3no2_A 227 YICNW 231 (276)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88874
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.53 E-value=4.7e-12 Score=128.34 Aligned_cols=237 Identities=10% Similarity=0.093 Sum_probs=167.3
Q ss_pred CCCeEEEEEccCCCEEEE-------EeCCCeEEEEeCCCCeeEEEec----CCCCceEEEEecC--CEEEEEecCCeEEE
Q psy4876 335 NENVCSVAWIQEGYMLGV-------GTSLGTVQLWDVSAKKKCRTMD----GHDVRVGALAWNT--YILSSGSRCGNIVH 401 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Las-------gs~dg~I~iwd~~~~~~~~~l~----~h~~~V~~l~~~~--~~L~sgs~dg~I~i 401 (609)
-....+++|+++|.++++ +..++.|.+||..+++...... ++...+.+++++. ..|+.++..+.|.+
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~ 96 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEE
Confidence 346789999999988777 5778899999988776543322 2456788899943 35555555557999
Q ss_pred EEcCCCCeeEEEE-cc-----CCCCeEEEEEccCCCEEEEEeCC---------------CcEEEEeCCCCCCCCCccceE
Q psy4876 402 HDVRSRDHKVALL-QN-----HTQEVCGLKWSPDGRYLASGGND---------------NLLNIWSGVPGQHTFSTQPIH 460 (609)
Q Consensus 402 wd~~~~~~~~~~~-~~-----h~~~V~~l~~spdg~~lasgs~D---------------g~I~iwd~~~~~~~~~~~~~~ 460 (609)
||.. +. . ..+ .. ....+.+++++++|+++++...+ +.|..||.. + +. .
T Consensus 97 ~d~~-g~-~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g------~~-~ 165 (314)
T 1pjx_A 97 VQTD-GT-F-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G------QM-I 165 (314)
T ss_dssp EETT-SC-E-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S------CE-E
T ss_pred EeCC-CC-E-EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C------CE-E
Confidence 9988 43 2 222 11 12358899999999988777655 567777765 4 22 2
Q ss_pred eecCCcccEEEEEEc----CCCCcEEEEEeccCCCeEEEEECC-CCce-----eEEEcCC--CCeEEEEEcCCCCeEEEE
Q psy4876 461 SLSRHQAAVKAIAWC----PWSPNVLASGGGTADRHIYFWNVS-SGAC-----LDSIDTK--SQVCALLWNSDYKELVSA 528 (609)
Q Consensus 461 ~~~~h~~~V~~l~~s----p~~~~llasggGs~Dg~I~iwd~~-t~~~-----~~~~~~~--~~v~sl~~s~~g~~l~~~ 528 (609)
.+..+......++|+ |++..++++. ..++.|.+||+. +++. ...+..+ ..+..++++++|..+++.
T Consensus 166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~--~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~ 243 (314)
T 1pjx_A 166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAE--TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN 243 (314)
T ss_dssp EEEEEESSEEEEEEEECTTSCEEEEEEEE--TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred EeccCCCCcceEEEecccCCCCCEEEEEE--CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEE
Confidence 222233456889999 9887666665 367899999986 4542 2222222 457889999999877764
Q ss_pred EecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEE-ECCCCEEEEEcCCC
Q psy4876 529 HGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSA-GADETLRLWKIFEK 586 (609)
Q Consensus 529 sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~-s~Dg~I~iWdl~~~ 586 (609)
. .++.|.+||..+++.+..+..+...+.+++|+++|..|+.+ ..++.|..|++...
T Consensus 244 ~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 244 W--GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp E--TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred c--CCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 3 58899999988777777777777889999999999955544 45688999998753
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.6e-12 Score=129.32 Aligned_cols=248 Identities=8% Similarity=-0.075 Sum_probs=172.9
Q ss_pred EEEEEecCCCeEEEE-cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEE
Q psy4876 272 LNLIDWSHFNVLAVA-LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYML 350 (609)
Q Consensus 272 v~~l~wsp~~lla~s-~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~L 350 (609)
...+.+..+.++.+. .++.|.+||..+ ++... ++........+++++++ .|
T Consensus 46 ~~~i~~~~~~lyv~~~~~~~v~viD~~t-------------------------~~~~~--~i~~~~~p~~i~~~~~g-~l 97 (328)
T 3dsm_A 46 AQSMVIRDGIGWIVVNNSHVIFAIDINT-------------------------FKEVG--RITGFTSPRYIHFLSDE-KA 97 (328)
T ss_dssp EEEEEEETTEEEEEEGGGTEEEEEETTT-------------------------CCEEE--EEECCSSEEEEEEEETT-EE
T ss_pred ceEEEEECCEEEEEEcCCCEEEEEECcc-------------------------cEEEE--EcCCCCCCcEEEEeCCC-eE
Confidence 345666666555544 468999999988 44422 23345678899999998 45
Q ss_pred EEEe-CCCeEEEEeCCCCeeEEEecCCC-----CceEEEEecCCEEEEEe--cCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 351 GVGT-SLGTVQLWDVSAKKKCRTMDGHD-----VRVGALAWNTYILSSGS--RCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 351 asgs-~dg~I~iwd~~~~~~~~~l~~h~-----~~V~~l~~~~~~L~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
+++. .++.|.+||..+++....+.... .....+++++..|+++. .++.|.++|..++ ..+..+.. .....
T Consensus 98 yv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~-~~~~~i~~-g~~p~ 175 (328)
T 3dsm_A 98 YVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETD-KVVDELTI-GIQPT 175 (328)
T ss_dssp EEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTT-EEEEEEEC-SSCBC
T ss_pred EEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCC-eEEEEEEc-CCCcc
Confidence 5555 78999999999998887776433 14456667666666665 4889999999987 35555543 33467
Q ss_pred EEEEccCCCEEEEEeCC----------CcEEEEeCCCCCCCCCccceEeecCC-cccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 423 GLKWSPDGRYLASGGND----------NLLNIWSGVPGQHTFSTQPIHSLSRH-QAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 423 ~l~~spdg~~lasgs~D----------g~I~iwd~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
.++++++|++++++..+ +.|.+||..++ +....+... ......++|+|++..++++ ++
T Consensus 176 ~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~------~v~~~~~~~~g~~p~~la~~~d~~~lyv~-----~~ 244 (328)
T 3dsm_A 176 SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF------TVEKQFKFKLGDWPSEVQLNGTRDTLYWI-----NN 244 (328)
T ss_dssp CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT------EEEEEEECCTTCCCEEEEECTTSCEEEEE-----SS
T ss_pred ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC------eEEEEEecCCCCCceeEEEecCCCEEEEE-----cc
Confidence 88999999977776554 78999999877 444444322 2357899999998777765 23
Q ss_pred eEEEEECCCCceeEE--EcC-CCCeEEEEEcCCCCeEEEEEe---cCCCeEEEEECCCCceEEEEeCCCCCEEEEEE
Q psy4876 492 HIYFWNVSSGACLDS--IDT-KSQVCALLWNSDYKELVSAHG---FAQNQLIIWKYPSLVKVAELHGHSARVLNLAM 562 (609)
Q Consensus 492 ~I~iwd~~t~~~~~~--~~~-~~~v~sl~~s~~g~~l~~~sG---~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~ 562 (609)
.|.+||..+++.... +.. ......++++|++..++++.. ..++.|.+||.. ++.+..+..- .....++|
T Consensus 245 ~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~ 319 (328)
T 3dsm_A 245 DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCW 319 (328)
T ss_dssp SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEE
T ss_pred EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec-cCcceEEE
Confidence 899999998876421 122 357889999997666666531 357899999988 8888777532 22345554
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-12 Score=128.68 Aligned_cols=233 Identities=10% Similarity=0.053 Sum_probs=161.6
Q ss_pred eEEEEEecCCC--eEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHFN--VLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~~--lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
....++|+|++ ++. ...++.|++|+..+ + ...+. . +...+.+++++++|
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~-------------------------~-~~~~~-~-~~~~~~~l~~~~dg 80 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDG-------------------------Q-LSPEM-H-PSHHQNGHCLNKQG 80 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTS-------------------------C-EEEEE-S-SCSSEEEEEECTTC
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCC-------------------------C-eEEEE-C-CCCCcceeeECCCC
Confidence 35679999985 444 44578999999987 5 32221 1 56779999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCC----CCceEEEEe--cCCEEEEE----e-------------cCCeEEEEEc
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGH----DVRVGALAW--NTYILSSG----S-------------RCGNIVHHDV 404 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h----~~~V~~l~~--~~~~L~sg----s-------------~dg~I~iwd~ 404 (609)
+++++...++.|.+||..+++........ ...+..+++ ++.++++. + ..+.|..++.
T Consensus 81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence 98877767789999999887755443321 234566888 46777763 2 1345666665
Q ss_pred CCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCCCCCCccceEeecCCcccEEEEEEcCCCCcEEE
Q psy4876 405 RSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGV-PGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 405 ~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~-~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla 483 (609)
. + ....+..+.....+++|+|+|+.+++.+.++.|++||+. .+... .....+..+...+.+++++++|. +++
T Consensus 161 ~-g--~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~---~~~~~~~~~~~~p~~i~~d~~G~-l~v 233 (296)
T 3e5z_A 161 D-G--TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE---YQGVHFTVEPGKTDGLRVDAGGL-IWA 233 (296)
T ss_dssp T-S--CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE---EEEEEECCSSSCCCSEEEBTTSC-EEE
T ss_pred C-C--CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc---CCCeEeeCCCCCCCeEEECCCCC-EEE
Confidence 4 2 344455666778999999999998777778999999987 33100 00122233455667899999984 665
Q ss_pred EEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEE-cCCCCeEEEEEecCCCeEEEEECCCCce
Q psy4876 484 SGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLW-NSDYKELVSAHGFAQNQLIIWKYPSLVK 546 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~-s~~g~~l~~~sG~~dg~I~Iwd~~~~~~ 546 (609)
+. ++.|.+||.. ++.+..+..+..+.+++| .++++.|++++ .+.|..++..+...
T Consensus 234 ~~----~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t---~~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 234 SA----GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTV---STEFWSIETNVRGL 289 (296)
T ss_dssp EE----TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEE---TTEEEEEECSCCBC
T ss_pred Ec----CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEc---CCeEEEEEcccccc
Confidence 43 6889999986 778777776545899999 58999888864 35666667665543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-12 Score=125.36 Aligned_cols=236 Identities=11% Similarity=-0.022 Sum_probs=159.6
Q ss_pred eEEEEEecCCC-eEE-E-EcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHFN-VLA-V-ALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~~-lla-~-s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
....|++++++ +++ + ..++.|++|+..+ ...... ...+...+.+++++++|
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~-------------------------~~~~~~-~~~~~~~p~~i~~~~~g 78 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGS-------------------------TGTTVL-PFNGLYQPQGLAVDGAG 78 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------------------------------EEC-CCCSCCSCCCEEECTTC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCC-------------------------cccceE-eeCCcCCcceeEECCCC
Confidence 56789999986 444 3 4578999999765 222111 11233567889999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
+++++.. ++.|.+||................+..++++ +.++++...++.|.+|+..+.. ...........+.+++
T Consensus 79 ~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~p~~i~ 156 (270)
T 1rwi_B 79 TVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-QTVLPFTGLNDPDGVA 156 (270)
T ss_dssp CEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS-CEECCCCSCCSCCCEE
T ss_pred CEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce-eEeeccccCCCceeEE
Confidence 8665554 8899999987654432222333678889984 6777777778899999765542 2222223334678999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeE
Q psy4876 426 WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLD 505 (609)
Q Consensus 426 ~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~ 505 (609)
++++|+++++...++.|.+||.... ........+...+.+++++++| .++++. ..++.|.+||........
T Consensus 157 ~~~~g~l~v~~~~~~~i~~~~~~~~------~~~~~~~~~~~~p~~i~~d~~g-~l~v~~--~~~~~v~~~~~~~~~~~~ 227 (270)
T 1rwi_B 157 VDNSGNVYVTDTDNNRVVKLEAESN------NQVVLPFTDITAPWGIAVDEAG-TVYVTE--HNTNQVVKLLAGSTTSTV 227 (270)
T ss_dssp ECTTCCEEEEEGGGTEEEEECTTTC------CEEECCCSSCCSEEEEEECTTC-CEEEEE--TTTSCEEEECTTCSCCEE
T ss_pred EeCCCCEEEEECCCCEEEEEecCCC------ceEeecccCCCCceEEEECCCC-CEEEEE--CCCCcEEEEcCCCCccee
Confidence 9999997777777889999998765 2222222333668899999988 677765 357899999987654433
Q ss_pred EEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc
Q psy4876 506 SIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV 545 (609)
Q Consensus 506 ~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~ 545 (609)
.... ...+.+++++++|+.+++ ...++.|.+|+....+
T Consensus 228 ~~~~~~~~p~~i~~~~~g~l~v~--~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 228 LPFTGLNTPLAVAVDSDRTVYVA--DRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CCCCSCSCEEEEEECTTCCEEEE--EGGGTEEEEECCCGGG
T ss_pred eccCCCCCceeEEECCCCCEEEE--ECCCCEEEEEcCCCcc
Confidence 2222 247899999999985555 4478999999986544
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-10 Score=115.13 Aligned_cols=269 Identities=10% Similarity=-0.012 Sum_probs=181.5
Q ss_pred eEEEEEecCCC-eEEEE-cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHFN-VLAVA-LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~~-lla~s-~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
.+..|.+++++ +..+. .++.|.+||... .... ..+. ....+.++++.++|
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~--------------------------~~~~-~~~~~~~~~~~~i~~~~~g 73 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQSG--------------------------RIKE-FEVPTPDAKVMCLIVSSLG 73 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTS--------------------------CEEE-EECSSTTCCEEEEEECTTS
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCCC--------------------------ceEE-EECCCCCCcceeEEECCCC
Confidence 46778898887 44444 468999998762 1111 1122 34678999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEE-EecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCR-TMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGL 424 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 424 (609)
.++++...++.|.+||.. ++... .+......+.+++++ +.++++...++.|..+|.. +......+......+.++
T Consensus 74 ~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 74 DIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred CEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 877776667899999988 55432 223344678888884 6677766668899999987 432222233345678999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee
Q psy4876 425 KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504 (609)
Q Consensus 425 ~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~ 504 (609)
++.++|+++++...++.|..||. .+. ........+...+.++++++++ .++++. ...+.|.+||. +++..
T Consensus 152 ~~d~~g~l~v~~~~~~~i~~~~~-~g~-----~~~~~~~~~~~~~~~i~~d~~g-~l~v~~--~~~~~i~~~~~-~g~~~ 221 (300)
T 2qc5_A 152 TLGSDNALWFTENQNNSIGRITN-TGK-----LEEYPLPTNAAAPVGITSGNDG-ALWFVE--IMGNKIGRITT-TGEIS 221 (300)
T ss_dssp EECTTSSEEEEETTTTEEEEECT-TCC-----EEEEECSSTTCCEEEEEECTTS-SEEEEE--TTTTEEEEECT-TCCEE
T ss_pred EECCCCCEEEEecCCCeEEEECC-CCc-----EEEeeCCCCCCCcceEEECCCC-CEEEEc--cCCCEEEEEcC-CCcEE
Confidence 99999997776666788999998 442 1112222344568899999987 566654 24678999998 55544
Q ss_pred EE-Ec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE-EEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEE
Q psy4876 505 DS-ID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVA-ELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581 (609)
Q Consensus 505 ~~-~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iW 581 (609)
.. +. ....+.+++++++|...++ ...++.|.+|+. ++.... .+......+.+++++++|.++++.. . .|..+
T Consensus 222 ~~~~~~~~~~~~~i~~d~~g~l~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 222 EYDIPTPNARPHAITAGKNSEIWFT--EWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEE--ETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred EEECCCCCCCceEEEECCCCCEEEe--ccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 33 22 2357899999999985555 335789999998 444332 2333456689999999998666554 4 56666
Q ss_pred Ec
Q psy4876 582 KI 583 (609)
Q Consensus 582 dl 583 (609)
+.
T Consensus 297 ~p 298 (300)
T 2qc5_A 297 NL 298 (300)
T ss_dssp EE
T ss_pred CC
Confidence 54
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-11 Score=129.63 Aligned_cols=283 Identities=13% Similarity=0.099 Sum_probs=181.2
Q ss_pred eEEEEEecCC-CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCE
Q psy4876 271 YLNLIDWSHF-NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYM 349 (609)
Q Consensus 271 ~v~~l~wsp~-~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~ 349 (609)
.++.|++++. ++++++....+.+|+++... .......+..+......+.. |+.|+| ++++
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~----------------~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~ 99 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLR----------------DHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQ 99 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHH----------------HHHHSSSCCCCCSEEEECTT-EEEEEE--ETTE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhh----------------hhhccccccccceEEeeCCC-eeEEEE--CCCE
Confidence 4789999997 57777776788889976510 00000001122222333455 999999 9999
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccC
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPD 429 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 429 (609)
|+++ .+|.|++||+.+.........|...+.++.+....+++++.||.|.+||+..+.. .. +...|+|++|||+
T Consensus 100 L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~-~~----~~~~Vs~v~WSpk 173 (388)
T 1xip_A 100 VLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKST-KQ----LAQNVTSFDVTNS 173 (388)
T ss_dssp EEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE-EE----EEESEEEEEECSS
T ss_pred EEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcc-cc----ccCCceEEEEcCC
Confidence 9999 7799999999877666667778888999888554588899999999999997642 22 4568999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCCccc--eEee------c---CCcccEEEEEEcCCCCcEEEEEecc---C-----C
Q psy4876 430 GRYLASGGNDNLLNIWSGVPGQHTFSTQP--IHSL------S---RHQAAVKAIAWCPWSPNVLASGGGT---A-----D 490 (609)
Q Consensus 430 g~~lasgs~Dg~I~iwd~~~~~~~~~~~~--~~~~------~---~h~~~V~~l~~sp~~~~llasggGs---~-----D 490 (609)
| ++.|..||.|++|+...+ .. ...+ . +|...|.+|.|.+++..+++-+... . +
T Consensus 174 G--~~vg~~dg~i~~~~~~~~------~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~~ 245 (388)
T 1xip_A 174 Q--LAVLLKDRSFQSFAWRNG------EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYD 245 (388)
T ss_dssp E--EEEEETTSCEEEEEEETT------EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCC
T ss_pred c--eEEEEcCCcEEEEcCCCc------cccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCCc
Confidence 9 788999999999988765 22 3334 2 3778899999999886665544211 1 2
Q ss_pred CeEEEEECCCCcee-EEE-c----CC----C----CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe-----
Q psy4876 491 RHIYFWNVSSGACL-DSI-D----TK----S----QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH----- 551 (609)
Q Consensus 491 g~I~iwd~~t~~~~-~~~-~----~~----~----~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~----- 551 (609)
-.++|.+...+... ..+ + .. . ...--.|.|+.+.|+.++....-.|-|++-. ..+..+.
T Consensus 246 ~~~~ii~~~~~~~~f~~~~d~~~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~Ss~S~di~il~~~--~~~~~~~Ds~Ra 323 (388)
T 1xip_A 246 QKMYIIKHIDGSASFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWDSK--QVIEPSQDSERA 323 (388)
T ss_dssp EEEEEEEEETTEEEEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEECSS--SEEEESSGGGCC
T ss_pred ceEEEEEcCCCCceeEccccCcCCcCCccCCceeeeeehhcccccCCcEEEEeCCCCcceEEeccc--cEEeecCccccc
Confidence 25677663233221 112 1 00 0 1222357777777776655555566666532 1111111
Q ss_pred --------CCCCCEEEEEEeCC-----------------CCEEEEEECCCCEEEEEcCCCcc
Q psy4876 552 --------GHSARVLNLAMSPD-----------------ETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 552 --------~h~~~V~~l~~spd-----------------g~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
+.......+++.-. -..|.+-+.||.+..|.+...+.
T Consensus 324 ~lPl~~~~~~Dt~piG~alD~ss~~~v~~p~~g~e~~~plP~l~~L~~~G~L~~~~~~~~~~ 385 (388)
T 1xip_A 324 VLPISEETDKDTNPIGVAVDVVTSGTILEPCSGVDTIERLPLVYILNNEGSLQIVGLFHVAA 385 (388)
T ss_dssp BCCBCTTTCCBCCEEEEEEECSCCC--------------CCEEEEEETTSEEEEEEEEC---
T ss_pred eeccCCCCCCCCcceEEEEEcccCceecCCCCCcccCCCCCEEEEEcCCceEEEEEEEchhh
Confidence 11122344444321 23578888999999999876553
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-10 Score=113.57 Aligned_cols=236 Identities=11% Similarity=0.014 Sum_probs=168.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEE-ecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCee
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRT-MDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
+...+.++++.++|+++++...++.|.+||.. ++.... +..+...+.+++++ +.++++...++.|..||... ...
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~ 90 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-IIK 90 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cEE
Confidence 45689999999999877766667899999988 554332 23355778899984 67776666688999999863 222
Q ss_pred EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCC
Q psy4876 411 VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD 490 (609)
Q Consensus 411 ~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~D 490 (609)
...+......+.++++.++|.++++...++.|.+||. ++. ........+...+.++++.+++ .++++. ..+
T Consensus 91 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-----~~~~~~~~~~~~~~~i~~~~~g-~l~v~~--~~~ 161 (299)
T 2z2n_A 91 EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK-----IREYELPNKGSYPSFITLGSDN-ALWFTE--NQN 161 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC-----EEEEECSSTTCCEEEEEECTTS-CEEEEE--TTT
T ss_pred EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC-----EEEecCCCCCCCCceEEEcCCC-CEEEEe--CCC
Confidence 2222234567899999999998888777889999998 442 1112223345578999999988 566654 357
Q ss_pred CeEEEEECCCCceeEE-Ec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE-EeCCCCCEEEEEEeCCCC
Q psy4876 491 RHIYFWNVSSGACLDS-ID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE-LHGHSARVLNLAMSPDET 567 (609)
Q Consensus 491 g~I~iwd~~t~~~~~~-~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~ 567 (609)
+.|..||. +++.... .. ....+..+++++++..+++ ...++.|.+||. ++..... +..+...+.+++++++|.
T Consensus 162 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~ 237 (299)
T 2z2n_A 162 NAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFV--EIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGID 237 (299)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE--ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC
T ss_pred CEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEE--ccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCC
Confidence 89999999 6665543 22 2346889999999886555 335789999998 6654332 233557799999999999
Q ss_pred EEEEEECCCCEEEEEcC
Q psy4876 568 TVLSAGADETLRLWKIF 584 (609)
Q Consensus 568 ~L~s~s~Dg~I~iWdl~ 584 (609)
++++...++.|.+||..
T Consensus 238 l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 238 LWFTEWGANKIGRLTSN 254 (299)
T ss_dssp EEEEETTTTEEEEEETT
T ss_pred EEEeccCCceEEEECCC
Confidence 77666578899999983
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.1e-12 Score=144.85 Aligned_cols=243 Identities=12% Similarity=0.076 Sum_probs=160.3
Q ss_pred CCeEEEEEccCCCEEEEEeCC-----CeEEEEeCCCCeeEEEecCCCCceEEEEecC-CEEEEEecCCe-----------
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSL-----GTVQLWDVSAKKKCRTMDGHDVRVGALAWNT-YILSSGSRCGN----------- 398 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~d-----g~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~-~~L~sgs~dg~----------- 398 (609)
..+..++|||||++||.+..+ ..|++||+.+++.+... .+...+..++|.+ +.|+.++.++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------CCC
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCcccccccccCCC
Confidence 468899999999999987654 46999999998875532 1222235678832 77777776543
Q ss_pred ---EEEEEcCCCCee-EEEEc--cCCCCeEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCCCCCCccc-eEeecCCc
Q psy4876 399 ---IVHHDVRSRDHK-VALLQ--NHTQEVCGLKWSPDGRYLASGGNDN-----LLNIWSGVPGQHTFSTQP-IHSLSRHQ 466 (609)
Q Consensus 399 ---I~iwd~~~~~~~-~~~~~--~h~~~V~~l~~spdg~~lasgs~Dg-----~I~iwd~~~~~~~~~~~~-~~~~~~h~ 466 (609)
|++|++.++... ...+. .+...+.++.|+|||++|+..+.++ .|++||+.++. .. ...+..+.
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~-----~~~~~~l~~~~ 316 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGK-----IGPVTALIPDL 316 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTE-----ECCCEEEECSS
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCC-----CcccEEecCCC
Confidence 899999776421 22333 3334588999999999988877554 89999987651 12 34455555
Q ss_pred ccEEEEEEcCCCCcEEEEEe-ccCCCeEEEEECCCC--ceeEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q psy4876 467 AAVKAIAWCPWSPNVLASGG-GTADRHIYFWNVSSG--ACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 467 ~~V~~l~~sp~~~~llasgg-Gs~Dg~I~iwd~~t~--~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~ 542 (609)
..+.... .|++..+++... +..++.|.+||+.++ .....+.... .+..+.|+ ++..+++. ..++..+||.+.
T Consensus 317 ~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~--~~dg~~~l~~~~ 392 (741)
T 1yr2_A 317 KAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASY--IHDAKSQVLAFD 392 (741)
T ss_dssp SSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEE--EETTEEEEEEEE
T ss_pred CceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEE--EECCEEEEEEEe
Confidence 5555554 488877776652 112567999999875 3333343333 45677777 44444443 367776666543
Q ss_pred -CCceEEEEeC-CCCCEEEEEEeCCCCEEE-EEE---CCCCEEEEEcCCCcc
Q psy4876 543 -SLVKVAELHG-HSARVLNLAMSPDETTVL-SAG---ADETLRLWKIFEKVK 588 (609)
Q Consensus 543 -~~~~~~~l~~-h~~~V~~l~~spdg~~L~-s~s---~Dg~I~iWdl~~~~~ 588 (609)
.+..+..+.. +.+.|..++++|++..|+ +.+ ..++|++||+.+++.
T Consensus 393 ~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 393 LDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4556666654 367789999999988555 332 347899999987653
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-10 Score=117.55 Aligned_cols=257 Identities=10% Similarity=-0.032 Sum_probs=174.7
Q ss_pred eEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEe----------CCCeE
Q psy4876 290 SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGT----------SLGTV 359 (609)
Q Consensus 290 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs----------~dg~I 359 (609)
.|.+||..+ ++. +.++.....- .++++|||++|+++. .++.|
T Consensus 48 ~v~v~D~~t-------------------------~~~--~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v 99 (373)
T 2mad_H 48 QQWVLDAGS-------------------------GSI--LGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYV 99 (373)
T ss_pred EEEEEECCC-------------------------CeE--EEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeE
Confidence 789999987 443 3344422223 999999999999886 36789
Q ss_pred EEEeCCCCeeEEEecCC-------CCceEEEEe--cCCEEEEEec--CCeEEEEEcCCCCeeEEE-EccCCCCeEEEEEc
Q psy4876 360 QLWDVSAKKKCRTMDGH-------DVRVGALAW--NTYILSSGSR--CGNIVHHDVRSRDHKVAL-LQNHTQEVCGLKWS 427 (609)
Q Consensus 360 ~iwd~~~~~~~~~l~~h-------~~~V~~l~~--~~~~L~sgs~--dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~s 427 (609)
.+||..+.+.+..+... ......+.| ++++|+++.. ++.|.++| .++. .+.. +.. .. ++.+.
T Consensus 100 ~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~-~~~~~i~~-~~---~~~~~ 173 (373)
T 2mad_H 100 EVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS-SDDQLLSS-PT---CYHIH 173 (373)
T ss_pred EEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC-EEeEEcCC-Cc---eEEEE
Confidence 99999988887766432 122345666 6888888774 57899999 8763 4544 432 22 24455
Q ss_pred cCC-CEEEEEeCCCcEEEEeCCCCCCCCCccceEeec-----CCccc-EEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 428 PDG-RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS-----RHQAA-VKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 428 pdg-~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-----~h~~~-V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
|++ +.+++.+.||.+.++|. +++ .+.... ....+ .....+.+++..+++.. ..+.+.+.|+.+
T Consensus 174 ~~~~~~~~~~~~dg~~~~vd~-~g~------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~v~vid~~~ 243 (373)
T 2mad_H 174 PGAPSTFYLLCAQGGLAKTDH-AGG------AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV---YSGKILQADISA 243 (373)
T ss_pred eCCCceEEEEcCCCCEEEEEC-CCc------EEEEEeccccccCCcceeecceeEecCCEEEEEc---CCceEEEEeccC
Confidence 654 45666778999999999 663 221111 11122 12345666666666553 578999999976
Q ss_pred Cc--eeEEEcC-----------CCCeEEEEEcCCCCeEEEEEec--------CCCeEEEEECCCCceEEEEeCCCCCEEE
Q psy4876 501 GA--CLDSIDT-----------KSQVCALLWNSDYKELVSAHGF--------AQNQLIIWKYPSLVKVAELHGHSARVLN 559 (609)
Q Consensus 501 ~~--~~~~~~~-----------~~~v~sl~~s~~g~~l~~~sG~--------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~ 559 (609)
+. .+..+.. ......+.++++++.++++... ..+.|.++|..+++.+..+.. .....+
T Consensus 244 ~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~ 322 (373)
T 2mad_H 244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDA 322 (373)
T ss_pred CcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCe
Confidence 53 2233321 1224457899999988886421 246899999999999988853 335899
Q ss_pred EEEeCCCC-EEEEEE-CCCCEEEEEcCCCccchh
Q psy4876 560 LAMSPDET-TVLSAG-ADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 560 l~~spdg~-~L~s~s-~Dg~I~iWdl~~~~~~~k 591 (609)
++|+|||+ .++++. .++.|.+||+.+.+..+.
T Consensus 323 i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 323 ISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 99999999 777777 589999999999887765
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-11 Score=120.88 Aligned_cols=209 Identities=11% Similarity=0.054 Sum_probs=154.4
Q ss_pred cCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CC-CCeEEEEEccCCCEEEEEe
Q psy4876 278 SHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GN-ENVCSVAWIQEGYMLGVGT 354 (609)
Q Consensus 278 sp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~-~~V~~v~~spdg~~Lasgs 354 (609)
+|++ +++++.++.|++||.++ ++. +.++. +. ..+.++.++|+|++|+ +
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~t-------------------------G~~--~w~~~~~~~~~~~~~~~~pdG~ilv--s 53 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDT-------------------------KEI--VWEYPLEKGWECNSVAATKAGEILF--S 53 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTT-------------------------TEE--EEEEECCTTCCCCEEEECTTSCEEE--E
T ss_pred CCCcEEEeeCCCCEEEEEECCC-------------------------CeE--EEEeCCCccCCCcCeEECCCCCEEE--e
Confidence 4666 44566789999999977 554 34444 33 4789999999999888 4
Q ss_pred CCCeEEEEeCCCCeeEEEecCCC-CceEEEEe--cCCEEEEEec-CCeEEEEEcCCCCeeEEEEc------cCCCCeEEE
Q psy4876 355 SLGTVQLWDVSAKKKCRTMDGHD-VRVGALAW--NTYILSSGSR-CGNIVHHDVRSRDHKVALLQ------NHTQEVCGL 424 (609)
Q Consensus 355 ~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~--~~~~L~sgs~-dg~I~iwd~~~~~~~~~~~~------~h~~~V~~l 424 (609)
.++.|..||. +++.+..+..+. ..+.++.+ +++++++.+. ++.|..+|.. + ..+..+. .+......+
T Consensus 54 ~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-G-k~l~~~~~~~~~~~~~~~~~~v 130 (276)
T 3no2_A 54 YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-G-EVLSKTEFETGIERPHAQFRQI 130 (276)
T ss_dssp CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-S-CEEEEEEECCSCSSGGGSCSCC
T ss_pred CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-C-CEEEEEeccCCCCcccccccCc
Confidence 5678999999 889998888653 46777777 7889988887 7788888763 3 3444433 122245567
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee
Q psy4876 425 KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504 (609)
Q Consensus 425 ~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~ 504 (609)
++.++|+++++...++.|.+||.. + +.+.++..+ ..+.++...+++. +++++ ..++.|..+|..+|+.+
T Consensus 131 ~~~~~G~~lv~~~~~~~v~~~d~~-G------~~~w~~~~~-~~~~~~~~~~~g~-~~v~~--~~~~~v~~~d~~tG~~~ 199 (276)
T 3no2_A 131 NKNKKGNYLVPLFATSEVREIAPN-G------QLLNSVKLS-GTPFSSAFLDNGD-CLVAC--GDAHCFVQLNLESNRIV 199 (276)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-S------CEEEEEECS-SCCCEEEECTTSC-EEEEC--BTTSEEEEECTTTCCEE
T ss_pred eECCCCCEEEEecCCCEEEEECCC-C------CEEEEEECC-CCccceeEcCCCC-EEEEe--CCCCeEEEEeCcCCcEE
Confidence 889999999999999999999998 7 566666544 3455677888875 55554 25778999999999999
Q ss_pred EEEcCC-------CCeEEEEEcCCCCeEEEEE
Q psy4876 505 DSIDTK-------SQVCALLWNSDYKELVSAH 529 (609)
Q Consensus 505 ~~~~~~-------~~v~sl~~s~~g~~l~~~s 529 (609)
..+... ..+..++..++|..+++..
T Consensus 200 w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 200 RRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 888532 1377888888888887753
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-10 Score=118.82 Aligned_cols=243 Identities=9% Similarity=-0.092 Sum_probs=163.5
Q ss_pred EEEecCCC-eEEEE-----------cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec------CC
Q psy4876 274 LIDWSHFN-VLAVA-----------LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE------GN 335 (609)
Q Consensus 274 ~l~wsp~~-lla~s-----------~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------h~ 335 (609)
.+.+|||+ .+.++ .++.|.+||..+ .+......+. +.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t-------------------------~~~~~~i~~~~~~~~~~g 124 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT-------------------------FLPIADIELPDAPRFDVG 124 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC-------------------------CcEEEEEECCCccccccC
Confidence 58899997 44433 267899999987 3322222111 12
Q ss_pred CCeEEEEEccCCCEEEEEeC--CCeEEEEeCCCCeeEEE-ecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTS--LGTVQLWDVSAKKKCRT-MDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~--dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
.....++|+|||++|+++.. ++.|.++| .+++.+.. +... ..+....+....+++.+.||.+.++|. ++. ...
T Consensus 125 ~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~-~~~ 200 (373)
T 2mad_H 125 PYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGG-AAG 200 (373)
T ss_pred CCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-ceEEEEeCCCceEEEEcCCCCEEEEEC-CCc-EEE
Confidence 34568999999999998874 47899999 99988877 6532 223323334567778889999999999 654 332
Q ss_pred EEc-----cCCCC-eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC----------CcccEEEEEEcC
Q psy4876 413 LLQ-----NHTQE-VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR----------HQAAVKAIAWCP 476 (609)
Q Consensus 413 ~~~-----~h~~~-V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~----------h~~~V~~l~~sp 476 (609)
... ..... .....+.+++..++..+.++.|.+.|+..... ..+..+.. .......+.++|
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~----~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~ 276 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA----TNKAPIDALSGGRKADTWRPGGWQQVAYLK 276 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc----eEeeeeeecCCcccccceecCceEeEEECC
Confidence 211 11122 12345667666555555778999999975421 11111110 122344578999
Q ss_pred CCCcEEEEEecc-------CCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceEE
Q psy4876 477 WSPNVLASGGGT-------ADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYK-ELVSAHGFAQNQLIIWKYPSLVKVA 548 (609)
Q Consensus 477 ~~~~llasggGs-------~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~-~l~~~sG~~dg~I~Iwd~~~~~~~~ 548 (609)
++..++++.... .++.|.++|+.+++.+..+........++|++||+ .+++ +...++.|.+||..+++.+.
T Consensus 277 d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v-~~~~~~~V~ViD~~t~~vv~ 355 (373)
T 2mad_H 277 SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYA-LSAGTEVLHIYDAGAGDQDQ 355 (373)
T ss_pred CCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEE-EcCCCCeEEEEECCCCCEEe
Confidence 998888764210 14689999999999999998888899999999999 5555 34458999999999999988
Q ss_pred EE
Q psy4876 549 EL 550 (609)
Q Consensus 549 ~l 550 (609)
.+
T Consensus 356 ~i 357 (373)
T 2mad_H 356 ST 357 (373)
T ss_pred ee
Confidence 74
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-10 Score=123.20 Aligned_cols=235 Identities=10% Similarity=0.012 Sum_probs=164.4
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCC--eEEEEEcCCCCeeE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCG--NIVHHDVRSRDHKV 411 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg--~I~iwd~~~~~~~~ 411 (609)
.....|+|+++|+++++...++.|++||..++............ . ++| ++..|+++..++ .|.+++...... .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence 46789999999997777777899999999987776655543332 2 777 567888888766 799998876532 2
Q ss_pred EEE----ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEe--ecCCcccE--EEEEEcCCCCcEEE
Q psy4876 412 ALL----QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHS--LSRHQAAV--KAIAWCPWSPNVLA 483 (609)
Q Consensus 412 ~~~----~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~--~~~h~~~V--~~l~~sp~~~~lla 483 (609)
..+ ......+.+++++|++..|+++..++.|+.||..++.. ..+.. ..++...- ..++|+|++..+++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~----~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV----TLIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE----EEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE----EEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 233 22456788999999555555577788999999987621 11100 11222222 38999997667887
Q ss_pred EEeccCCCeEEEEECCCCceeEEEcC---------------CCCeEEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceE
Q psy4876 484 SGGGTADRHIYFWNVSSGACLDSIDT---------------KSQVCALLWNSDYKELVSAHGF-AQNQLIIWKYPSLVKV 547 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t~~~~~~~~~---------------~~~v~sl~~s~~g~~l~~~sG~-~dg~I~Iwd~~~~~~~ 547 (609)
+. ..++.|+.||.... ....... -.....++++++|..+++ .. .++.|+.|+..++..
T Consensus 284 ~d--~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva--d~~~~~~I~~~~~~~G~v- 357 (409)
T 3hrp_A 284 SD--QNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV--DGFKGYCLRKLDILDGYV- 357 (409)
T ss_dssp EE--TTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE--ETTTTCEEEEEETTTTEE-
T ss_pred Ee--CCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE--eCCCCCEEEEEECCCCEE-
Confidence 76 36889999997643 2222211 134789999999995554 55 688999999877764
Q ss_pred EEEeCC---------------CCCEEEEEEeCCCCEEEEEECCCCEEEEEc
Q psy4876 548 AELHGH---------------SARVLNLAMSPDETTVLSAGADETLRLWKI 583 (609)
Q Consensus 548 ~~l~~h---------------~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl 583 (609)
..+.++ -.....|+++++|.++++-..++.|+.+++
T Consensus 358 ~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 358 STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 444444 245889999999888888888888988776
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-09 Score=108.79 Aligned_cols=236 Identities=9% Similarity=-0.031 Sum_probs=167.8
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEE-EecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCee
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCR-TMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
....+.++++.++|+.+++...++.|.+||.. ++... .+..+...+..++++ +.++++...++.|..+|.. +...
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 45688999999999988777678999999988 55443 233344678889884 5666666667899999987 4322
Q ss_pred EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCC
Q psy4876 411 VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD 490 (609)
Q Consensus 411 ~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~D 490 (609)
..........+.++++.++|+++++...++.|..||.. +. .....+......+.++++.+++. ++++. ..+
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-----~~~~~~~~~~~~~~~i~~d~~g~-l~v~~--~~~ 166 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT-----IYEYDLPNKGSYPAFITLGSDNA-LWFTE--NQN 166 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-----EEEEECSSTTCCEEEEEECTTSS-EEEEE--TTT
T ss_pred EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC-----EEEccCCCCCCCceeEEECCCCC-EEEEe--cCC
Confidence 22233344678999999999988877768899999987 42 11122333455789999999885 66654 257
Q ss_pred CeEEEEECCCCceeEEEc--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE-EeCCCCCEEEEEEeCCCC
Q psy4876 491 RHIYFWNVSSGACLDSID--TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE-LHGHSARVLNLAMSPDET 567 (609)
Q Consensus 491 g~I~iwd~~t~~~~~~~~--~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~ 567 (609)
+.|..||. +++...... ....+..+++++++...++ ....+.|.+|+. ++..... +..+...+.+++++++|.
T Consensus 167 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~ 242 (300)
T 2qc5_A 167 NSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFV--EIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSE 242 (300)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE--ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC
T ss_pred CeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEE--ccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCC
Confidence 88999998 565543221 2346889999999876655 335678999998 4443332 334556789999999999
Q ss_pred EEEEEECCCCEEEEEcC
Q psy4876 568 TVLSAGADETLRLWKIF 584 (609)
Q Consensus 568 ~L~s~s~Dg~I~iWdl~ 584 (609)
+.++...++.|..|+..
T Consensus 243 l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 243 IWFTEWGANQIGRITND 259 (300)
T ss_dssp EEEEETTTTEEEEECTT
T ss_pred EEEeccCCCeEEEECCC
Confidence 77766667899999984
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.3e-11 Score=136.36 Aligned_cols=239 Identities=10% Similarity=-0.008 Sum_probs=159.2
Q ss_pred eeEEEEEecCCC-eEEEEc--C----CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEE
Q psy4876 270 YYLNLIDWSHFN-VLAVAL--G----GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVA 342 (609)
Q Consensus 270 ~~v~~l~wsp~~-lla~s~--d----g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~ 342 (609)
+.+..++||||+ .|+.+. + ..|++||+.+ +..... .+ +...+..++
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~t-------------------------g~~~~~-~~-~~~~~~~~~ 215 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVAD-------------------------GKPLAD-EL-KWVKFSGLA 215 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTT-------------------------CCEEEE-EE-EEEESCCCE
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCC-------------------------CCCCCc-cC-CCceeccEE
Confidence 578899999997 555332 2 3699999998 554332 11 122235789
Q ss_pred EccCCCEEEEEeCCCe--------------EEEEeCCCCee--EEEec--CCCCceEEEEe--cCCEEEEEecCC-----
Q psy4876 343 WIQEGYMLGVGTSLGT--------------VQLWDVSAKKK--CRTMD--GHDVRVGALAW--NTYILSSGSRCG----- 397 (609)
Q Consensus 343 ~spdg~~Lasgs~dg~--------------I~iwd~~~~~~--~~~l~--~h~~~V~~l~~--~~~~L~sgs~dg----- 397 (609)
|+|| +.|+.+..++. |.+|++.++.. ...+. .+...+..+.| +|++|+..+.++
T Consensus 216 wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~ 294 (741)
T 1yr2_A 216 WLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVN 294 (741)
T ss_dssp ESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCC
T ss_pred EECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcc
Confidence 9999 99998887654 89999977652 22333 34445888888 577777776544
Q ss_pred eEEEEEcCCCCee-EEEEccCCCCeEEEEEccCCCEEEEEeCC----CcEEEEeCCCCCCCCCccceEeecCCcccEEEE
Q psy4876 398 NIVHHDVRSRDHK-VALLQNHTQEVCGLKWSPDGRYLASGGND----NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI 472 (609)
Q Consensus 398 ~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~spdg~~lasgs~D----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l 472 (609)
.|++||+.++... ...+..+...+.... +|+|+.|+..+++ +.|.+||+.++. ......+..+...+..+
T Consensus 295 ~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~----~~~~~l~~~~~~~l~~~ 369 (741)
T 1yr2_A 295 TVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST----PRFDTVVPESKDNLESV 369 (741)
T ss_dssp EEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS----CEEEEEECCCSSEEEEE
T ss_pred eEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc----cccEEEecCCCCeEEEE
Confidence 8999999876323 445555555555553 4899998888764 459999987641 02223334444556777
Q ss_pred EEcCCCCcEEEEEeccCCCeEEEEECC-CCceeEEEcC--CCCeEEEEEcCCCCeEEEEE--ecCCCeEEEEECCCCc
Q psy4876 473 AWCPWSPNVLASGGGTADRHIYFWNVS-SGACLDSIDT--KSQVCALLWNSDYKELVSAH--GFAQNQLIIWKYPSLV 545 (609)
Q Consensus 473 ~~sp~~~~llasggGs~Dg~I~iwd~~-t~~~~~~~~~--~~~v~sl~~s~~g~~l~~~s--G~~dg~I~Iwd~~~~~ 545 (609)
+|. +..++++.. .|+..+||.+. ++.....+.. ...+..+.++++++.++... ....++|++||+.+++
T Consensus 370 ~~~--~~~lv~~~~--~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 370 GIA--GNRLFASYI--HDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEE--BTEEEEEEE--ETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEE--CCEEEEEEE--ECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 887 446777663 67776666544 4666666654 35688899999998776542 2345789999998776
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-10 Score=119.87 Aligned_cols=257 Identities=11% Similarity=0.032 Sum_probs=173.7
Q ss_pred EEecCCC--eEEEE----------cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecC------CC
Q psy4876 275 IDWSHFN--VLAVA----------LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEG------NE 336 (609)
Q Consensus 275 l~wsp~~--lla~s----------~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h------~~ 336 (609)
+.++||+ ++++. .++.|.+||..+ .+......+.. ..
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t-------------------------~~v~~~I~v~~g~r~~~g~ 137 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT-------------------------LLPTADIELPDAPRFLVGT 137 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-------------------------CCEEEEEEETTCCCCCBSC
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-------------------------CeEEEEEECCCccccccCC
Confidence 7889986 33332 357899999988 44333333221 23
Q ss_pred CeEEEEEccCCCEEEEEeC--CCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEE
Q psy4876 337 NVCSVAWIQEGYMLGVGTS--LGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~--dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~ 413 (609)
....++|+|||++|+++.. ++.|.|+|+.+++.+.++.... +..+.- ..+.+++.+.||.+.+.++.........
T Consensus 138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~ 215 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT 215 (386)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEE
T ss_pred CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--cceeecCCCceeEEECCCCCEEEEECCCCCeEEEe
Confidence 5667999999999998864 6899999999999999886422 112212 4677889999999999999763333222
Q ss_pred EccCC----CCeE-EEEEc-cCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec----------CCcccEEEEEEcCC
Q psy4876 414 LQNHT----QEVC-GLKWS-PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS----------RHQAAVKAIAWCPW 477 (609)
Q Consensus 414 ~~~h~----~~V~-~l~~s-pdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~----------~h~~~V~~l~~sp~ 477 (609)
...+. ..+. ...|. ++|++++ .+.+|.|++.|+..... ..+..+. ........++++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~----~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~ 290 (386)
T 3sjl_D 216 HTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA----KFLPAVEALTEAERADGWRPGGWQQVAYHRA 290 (386)
T ss_dssp ECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC----EECCCEESSCHHHHHTTEEECSSSCEEEETT
T ss_pred ecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc----eeecceeccccccccccccCCCcceeeECCC
Confidence 21111 2221 24664 5775544 56689999999976521 1111111 01223345777999
Q ss_pred CCcEEEEEec----c---CCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceEEE
Q psy4876 478 SPNVLASGGG----T---ADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYK-ELVSAHGFAQNQLIIWKYPSLVKVAE 549 (609)
Q Consensus 478 ~~~llasggG----s---~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~-~l~~~sG~~dg~I~Iwd~~~~~~~~~ 549 (609)
+..++++... + ..+.|.++|+.+++.+..+.....+.+++++++++ +|+++. ..++.|.++|..+++.+..
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn-~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALS-TGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEE-TTTTEEEEEETTTCCEEEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEc-CCCCeEEEEECCCCcEEEE
Confidence 9888876420 0 12679999999999999999888899999999997 566654 3689999999999999998
Q ss_pred EeCCCCCEEEEEEeCC
Q psy4876 550 LHGHSARVLNLAMSPD 565 (609)
Q Consensus 550 l~~h~~~V~~l~~spd 565 (609)
+..- +.-+.|.+++|
T Consensus 370 i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 370 VNQL-GHGPQVITTAD 384 (386)
T ss_dssp ECCC-CSSCCEEEECC
T ss_pred ecCC-CCCceeEECCc
Confidence 8543 23355666666
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-10 Score=121.63 Aligned_cols=272 Identities=11% Similarity=0.061 Sum_probs=179.5
Q ss_pred CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEEEEEe----------CC
Q psy4876 288 GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYMLGVGT----------SL 356 (609)
Q Consensus 288 dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs----------~d 356 (609)
++.|.+.|..+ .+.. .++. ...+ .++++|||++|+++. .+
T Consensus 58 ~~~V~ViD~~t-------------------------~~v~--~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 58 VTQQFVIDGEA-------------------------GRVI--GMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp SEEEEEEETTT-------------------------TEEE--EEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CCEEEEEECCC-------------------------CeEE--EEEECCCCC--cEEECCCCCEEEEEcccccccccCCCC
Confidence 46899999987 4433 3343 3333 499999999888875 35
Q ss_pred CeEEEEeCCCCeeEEEecCCC-------CceEEEEe--cCCEEEEEec--CCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 357 GTVQLWDVSAKKKCRTMDGHD-------VRVGALAW--NTYILSSGSR--CGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 357 g~I~iwd~~~~~~~~~l~~h~-------~~V~~l~~--~~~~L~sgs~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
+.|.+||..+.+.+..+.... .....+.+ ++++|+++.. ++.|.++|+.+. ..+..+.... +...
T Consensus 109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~-~vv~tI~v~g---~~~~ 184 (386)
T 3sjl_D 109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK-AFKRMLDVPD---CYHI 184 (386)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-EEEEEEECCS---EEEE
T ss_pred CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC-cEEEEEECCC---ccee
Confidence 789999999999888775321 13345666 6888887764 689999999997 4666664321 1233
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCC-CCCCCCccceEeecCCcccEE-EEEEc-CCCCcEEEEEeccCCCeEEEEECCCCc
Q psy4876 426 WSPDGRYLASGGNDNLLNIWSGVP-GQHTFSTQPIHSLSRHQAAVK-AIAWC-PWSPNVLASGGGTADRHIYFWNVSSGA 502 (609)
Q Consensus 426 ~spdg~~lasgs~Dg~I~iwd~~~-~~~~~~~~~~~~~~~h~~~V~-~l~~s-p~~~~llasggGs~Dg~I~iwd~~t~~ 502 (609)
+....+.+++.+.||.+.+.++.. ++.. ... ...+.....++. ...|. ++|..+++ +.++.|++.|+.++.
T Consensus 185 ~P~g~~~~~~~~~DG~~~~v~~~~~g~v~-~~~-~~~~~~~~~~~~~~~~~~~~dG~~~~v----s~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 185 FPTAPDTFFMHCRDGSLAKVAFGTEGTPE-ITH-TEVFHPEDEFLINHPAYSQKAGRLVWP----TYTGKIHQIDLSSGD 258 (386)
T ss_dssp EEEETTEEEEEETTSCEEEEECCSSSCCE-EEE-CCCCSCTTSCBCSCCEEETTTTEEEEE----BTTSEEEEEECTTSS
T ss_pred ecCCCceeEEECCCCCEEEEECCCCCeEE-Eee-cceeccccccccccceeEcCCCcEEEE----eCCCEEEEEECCCCc
Confidence 433456777888899999999876 4210 000 001111112221 23554 56643443 268999999997664
Q ss_pred --eeEEEc--------C---CCCeEEEEEcCCCCeEEEEEec--------CCCeEEEEECCCCceEEEEeCCCCCEEEEE
Q psy4876 503 --CLDSID--------T---KSQVCALLWNSDYKELVSAHGF--------AQNQLIIWKYPSLVKVAELHGHSARVLNLA 561 (609)
Q Consensus 503 --~~~~~~--------~---~~~v~sl~~s~~g~~l~~~sG~--------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~ 561 (609)
.+..+. . ......++++++++.++++... ..+.|.++|..+++.+..+..- ..++.|+
T Consensus 259 ~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~la 337 (386)
T 3sjl_D 259 AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSIN 337 (386)
T ss_dssp CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEE
T ss_pred ceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEE
Confidence 333332 0 1234457779999999987531 1367999999999999887532 3688999
Q ss_pred EeCCCC-EEEEE-ECCCCEEEEEcCCCccchhhhhhcccc
Q psy4876 562 MSPDET-TVLSA-GADETLRLWKIFEKVKSKKKEIKNNAS 599 (609)
Q Consensus 562 ~spdg~-~L~s~-s~Dg~I~iWdl~~~~~~~k~~~~~~~~ 599 (609)
+++|++ +|+++ ..++.|.++|..+++..+.........
T Consensus 338 vs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~ 377 (386)
T 3sjl_D 338 VSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGP 377 (386)
T ss_dssp ECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSC
T ss_pred ECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCc
Confidence 999997 66665 458999999999888766655544433
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.1e-11 Score=135.48 Aligned_cols=232 Identities=9% Similarity=-0.015 Sum_probs=154.4
Q ss_pred cCCCEEEEEeCCC-----eEEEEeCCCCeeEEEec------CCCCceEEEEe--cCCEEEE-----EecCCeEEEEEcCC
Q psy4876 345 QEGYMLGVGTSLG-----TVQLWDVSAKKKCRTMD------GHDVRVGALAW--NTYILSS-----GSRCGNIVHHDVRS 406 (609)
Q Consensus 345 pdg~~Lasgs~dg-----~I~iwd~~~~~~~~~l~------~h~~~V~~l~~--~~~~L~s-----gs~dg~I~iwd~~~ 406 (609)
|+|.+++....++ .|.+.+...++....+. +|...+..++| +|++|+. |+.+..|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 7888877766543 34444554554433332 45557888999 5777773 33446899999998
Q ss_pred CCeeEEEEccCCCCe--EEEEEccCCCEEEEEeCCCc-------------EEEEeCCCCCCCCCccceEeecCCcccEEE
Q psy4876 407 RDHKVALLQNHTQEV--CGLKWSPDGRYLASGGNDNL-------------LNIWSGVPGQHTFSTQPIHSLSRHQAAVKA 471 (609)
Q Consensus 407 ~~~~~~~~~~h~~~V--~~l~~spdg~~lasgs~Dg~-------------I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~ 471 (609)
+... . ..+...+ ..++|+|||+.|+.++.|.. |++|++.++... ...+.....+...+..
T Consensus 157 g~~~-~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~--~~lv~~~~~~~~~~~~ 231 (695)
T 2bkl_A 157 GEWS-K--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK--DTVVHERTGDPTTFLQ 231 (695)
T ss_dssp CCBC-S--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG--CEEEECCCCCTTCEEE
T ss_pred CCCc-C--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh--ceEEEecCCCCEEEEE
Confidence 7532 0 1122222 67899999999999998776 999999877310 1234444456668899
Q ss_pred EEEcCCCCcEEEEEecc-CCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEec--CCCeEEEEECCCCce--
Q psy4876 472 IAWCPWSPNVLASGGGT-ADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGF--AQNQLIIWKYPSLVK-- 546 (609)
Q Consensus 472 l~~sp~~~~llasggGs-~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~--~dg~I~Iwd~~~~~~-- 546 (609)
+.|+|+|+.++++.... ....|++||..+++..........+....| ++|. +++.+.. .++.|.+||+.++..
T Consensus 232 ~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~ 309 (695)
T 2bkl_A 232 SDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS 309 (695)
T ss_dssp EEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred EEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC
Confidence 99999998887765311 123788887766665544444455666666 6666 6554421 368899999987653
Q ss_pred EEEEeCC--CCCEEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 547 VAELHGH--SARVLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 547 ~~~l~~h--~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
...+..| ...|..++|+ ++.++++...|+..+||.+.
T Consensus 310 ~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 310 WKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp CEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred CeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 2334333 4568889998 77888999999999888765
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.37 E-value=4.4e-10 Score=113.70 Aligned_cols=223 Identities=12% Similarity=0.109 Sum_probs=153.6
Q ss_pred CCCeEEEEEccCC-CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 335 NENVCSVAWIQEG-YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 335 ~~~V~~v~~spdg-~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
..-..+..|++++ .++++...++.|..||..+++. ..+. ....+.++++ ++.+++ +. ++.|.+||..++. ..
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~-~~ 86 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQS-AV 86 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTE-EE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEE-EE-CCeEEEEECCCCc-EE
Confidence 3455689999965 5566666788999999987654 3332 4567899999 466544 44 5689999998763 22
Q ss_pred EEEcc----CCCCeEEEEEccCCCEEEEEeCC-----------CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcC
Q psy4876 412 ALLQN----HTQEVCGLKWSPDGRYLASGGND-----------NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476 (609)
Q Consensus 412 ~~~~~----h~~~V~~l~~spdg~~lasgs~D-----------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 476 (609)
..... ....+..++++|+|+++++...+ +.|+.+|.. + .+..+..+......++|+|
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g-------~~~~~~~~~~~pngi~~sp 158 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-H-------HVKKYFDQVDISNGLDWSL 158 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-S-------CEEEEEEEESBEEEEEECT
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-C-------CEEEEeeccccccceEEcC
Confidence 22211 12357889999999976654321 344444433 2 1222333344568999999
Q ss_pred CCCcEEEEEeccCCCeEEEEEC--CCCcee--EEE---c-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE
Q psy4876 477 WSPNVLASGGGTADRHIYFWNV--SSGACL--DSI---D-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVA 548 (609)
Q Consensus 477 ~~~~llasggGs~Dg~I~iwd~--~t~~~~--~~~---~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~ 548 (609)
++..++++. +.++.|.+||+ .++... ..+ . ....+..++++++|...++. ...+.|.+||..+++.+.
T Consensus 159 dg~~lyv~~--~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~--~~~~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 159 DHKIFYYID--SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVAC--YNGGRVIRLDPVTGKRLQ 234 (297)
T ss_dssp TSCEEEEEE--GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEE--ETTTEEEEECTTTCCEEE
T ss_pred CCCEEEEec--CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEE--cCCCEEEEEcCCCceEEE
Confidence 998777776 36789999997 456532 112 1 12467899999999766663 357889999999999999
Q ss_pred EEeCCCCCEEEEEEe-CCCCEEEEEEC
Q psy4876 549 ELHGHSARVLNLAMS-PDETTVLSAGA 574 (609)
Q Consensus 549 ~l~~h~~~V~~l~~s-pdg~~L~s~s~ 574 (609)
.+..+...+++++|. ||++.|+.++.
T Consensus 235 ~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 235 TVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 988887889999998 88887766654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.37 E-value=4e-10 Score=114.01 Aligned_cols=237 Identities=8% Similarity=0.023 Sum_probs=157.4
Q ss_pred EEEEEecCCC-eEEE--------EcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeee--ec-CCCCeE
Q psy4876 272 LNLIDWSHFN-VLAV--------ALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMD--LE-GNENVC 339 (609)
Q Consensus 272 v~~l~wsp~~-lla~--------s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~-h~~~V~ 339 (609)
...++|++++ ++.+ ..++.|++||..+ +....+.. .. +...+.
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~-------------------------g~~~~~~~~~~~~~~~~~~ 74 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT-------------------------GKKTVICKPEVNGYGGIPA 74 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT-------------------------CCEEEEECCEETTEECCEE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC-------------------------CcEEEEEecccCCCCCCCc
Confidence 4568999886 4444 5688999999877 44433321 01 235689
Q ss_pred EEEEccC-CCEEEEEeCCCeEEEEeCCCCeeEEE-ecC----CCCceEEEEec--CCEEEEEecC---------------
Q psy4876 340 SVAWIQE-GYMLGVGTSLGTVQLWDVSAKKKCRT-MDG----HDVRVGALAWN--TYILSSGSRC--------------- 396 (609)
Q Consensus 340 ~v~~spd-g~~Lasgs~dg~I~iwd~~~~~~~~~-l~~----h~~~V~~l~~~--~~~L~sgs~d--------------- 396 (609)
+++++++ |++++ ++..+.|.+||.. ++.... ... ....+.+++++ +.++++...+
T Consensus 75 ~i~~~~~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 152 (314)
T 1pjx_A 75 GCQCDRDANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF 152 (314)
T ss_dssp EEEECSSSSEEEE-EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred eEEEecCCCcEEE-EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCC
Confidence 9999999 66554 4444579999988 665433 221 12457888884 6677666554
Q ss_pred CeEEEEEcCCCCeeEEEEccCCCCeEEEEEc----cCCCEEEEE-eCCCcEEEEeCC-CCCCCCCccceEeecCCc-ccE
Q psy4876 397 GNIVHHDVRSRDHKVALLQNHTQEVCGLKWS----PDGRYLASG-GNDNLLNIWSGV-PGQHTFSTQPIHSLSRHQ-AAV 469 (609)
Q Consensus 397 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s----pdg~~lasg-s~Dg~I~iwd~~-~~~~~~~~~~~~~~~~h~-~~V 469 (609)
+.|..||.. +. . ..+..+.....+++|+ ++|+.|+++ ..++.|.+||+. .+.. ........+..+. ..+
T Consensus 153 ~~l~~~~~~-g~-~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~-~~~~~~~~~~~~~~~~p 228 (314)
T 1pjx_A 153 GSIYCFTTD-GQ-M-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI-ENKKVWGHIPGTHEGGA 228 (314)
T ss_dssp EEEEEECTT-SC-E-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE-EEEEEEEECCCCSSCEE
T ss_pred CeEEEECCC-CC-E-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc-ccceEEEECCCCCCCCC
Confidence 567777765 32 2 2233344557899999 999765555 467899999976 3310 0001223333343 567
Q ss_pred EEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q psy4876 470 KAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS 543 (609)
Q Consensus 470 ~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~ 543 (609)
..++++++| .++++.. .++.|.+||..+++.+..+..+ ..+.+++|+++++.|+++. ..++.|..|+...
T Consensus 229 ~~i~~d~~G-~l~v~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~-~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 229 DGMDFDEDN-NLLVANW--GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE-HENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEBTTC-CEEEEEE--TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEE-TTTTEEEEEECSS
T ss_pred CceEECCCC-CEEEEEc--CCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEe-CCCCeEEEEeCCC
Confidence 899999988 4655542 5789999999878877777655 5799999999999776653 3567899999764
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.5e-11 Score=135.20 Aligned_cols=243 Identities=13% Similarity=0.154 Sum_probs=162.7
Q ss_pred CCCCeEEEEEccCCCEEEEEeC-----CCeEEEEeCCCCeeEEE-ecCCCCceEEEEe-cCCEEEEEecCC---------
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTS-----LGTVQLWDVSAKKKCRT-MDGHDVRVGALAW-NTYILSSGSRCG--------- 397 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~-----dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~-~~~~L~sgs~dg--------- 397 (609)
+...+..++|||||++||.+.. ...|+|||+.+++.+.. +... ....++| |++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~WsDg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWLGNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEETTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEeCCCEEEEEEecCccccccccc
Confidence 3446888999999999986432 25799999999886543 2211 1234556 788888877764
Q ss_pred ----eEEEEEcCCCCee-EEEEc--c-CCCCeEEEEEccCCCEEEEEeC----CCcEEEEeCCCCCCCCCccceEeecCC
Q psy4876 398 ----NIVHHDVRSRDHK-VALLQ--N-HTQEVCGLKWSPDGRYLASGGN----DNLLNIWSGVPGQHTFSTQPIHSLSRH 465 (609)
Q Consensus 398 ----~I~iwd~~~~~~~-~~~~~--~-h~~~V~~l~~spdg~~lasgs~----Dg~I~iwd~~~~~~~~~~~~~~~~~~h 465 (609)
.|++|++.+.... ...+. . |...+.++.|+|||++|+.... ++.|++||+.++. .....+..+
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~-----~~~~~l~~~ 279 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN-----APLLTVQGD 279 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT-----CCCEEEECS
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC-----CceEEEeCC
Confidence 3999999876421 22232 3 4455788999999998865443 3589999998763 234555556
Q ss_pred cccEEEEEEcCCCCcEEEEEec-cCCCeEEEEECCCCce--eEEE-cCCCCeEEEEEcCCCCeEEEEEecCCC--eEEEE
Q psy4876 466 QAAVKAIAWCPWSPNVLASGGG-TADRHIYFWNVSSGAC--LDSI-DTKSQVCALLWNSDYKELVSAHGFAQN--QLIIW 539 (609)
Q Consensus 466 ~~~V~~l~~sp~~~~llasggG-s~Dg~I~iwd~~t~~~--~~~~-~~~~~v~sl~~s~~g~~l~~~sG~~dg--~I~Iw 539 (609)
....... |++++..+++.... ...+.|..+|+.++.. ...+ .+...+. .|+++++.|+.... .++ .|++|
T Consensus 280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~-~~g~~~l~~~ 355 (693)
T 3iuj_A 280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM-VDATARVEQF 355 (693)
T ss_dssp SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE-ETTEEEEEEE
T ss_pred CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE-ECCeeEEEEE
Confidence 6655555 67777777776531 1247899999998765 2333 3333444 89999998887642 344 68899
Q ss_pred ECCCCceEEEEe-CCCCCEEEEEEeCCCCEEEEEECC----CCEEEEEcCCCcc
Q psy4876 540 KYPSLVKVAELH-GHSARVLNLAMSPDETTVLSAGAD----ETLRLWKIFEKVK 588 (609)
Q Consensus 540 d~~~~~~~~~l~-~h~~~V~~l~~spdg~~L~s~s~D----g~I~iWdl~~~~~ 588 (609)
++..+ ....+. .+.+.+..+.+++++..|+....+ ++|..||+.+++.
T Consensus 356 d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 356 DYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp CTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred ECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 98744 444443 344567788888888876655544 7899999877653
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-09 Score=109.41 Aligned_cols=219 Identities=11% Similarity=0.036 Sum_probs=149.7
Q ss_pred eEEEEEccCC-CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEE
Q psy4876 338 VCSVAWIQEG-YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALL 414 (609)
Q Consensus 338 V~~v~~spdg-~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~ 414 (609)
..++.|+|++ .++++...++.|.+||..+++.. .+. ....+.+++| ++.+++ ++.+ .|.+||..++. . ..+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v-~~~~-gl~~~d~~~g~-~-~~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLI-ASDD-GLFLRDTATGV-L-TLH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEE-EETT-EEEEEETTTCC-E-EEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEE-EECC-CEEEEECCCCc-E-EEE
Confidence 4578899975 55666667889999999887643 333 3467899998 455555 4444 49999988764 2 222
Q ss_pred ccC-----CCCeEEEEEccCCCEEEEEeC------CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEE
Q psy4876 415 QNH-----TQEVCGLKWSPDGRYLASGGN------DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 415 ~~h-----~~~V~~l~~spdg~~lasgs~------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla 483 (609)
... ...+..++++|+|+++++... .+.|+.++ ++ + +..+..+......++|+|++..+++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g------~-~~~~~~~~~~~~~i~~s~dg~~lyv 195 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG------K-VTKLFADISIPNSICFSPDGTTGYF 195 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT------E-EEEEEEEESSEEEEEECTTSCEEEE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC------c-EEEeeCCCcccCCeEEcCCCCEEEE
Confidence 211 235889999999997765542 24566666 33 2 2222223345679999999977777
Q ss_pred EEeccCCCeEEEEECC--CC-ce-----eEEEc-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCC
Q psy4876 484 SGGGTADRHIYFWNVS--SG-AC-----LDSID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHS 554 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~--t~-~~-----~~~~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~ 554 (609)
+. +.++.|.+||+. ++ .. ...+. ....+..++++++|.+.++.. .++.|.+|+. +++.+..+..+.
T Consensus 196 ~~--~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~--~~~~v~~~d~-~g~~~~~i~~~~ 270 (326)
T 2ghs_A 196 VD--TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW--GEGAVDRYDT-DGNHIARYEVPG 270 (326)
T ss_dssp EE--TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE--TTTEEEEECT-TCCEEEEEECSC
T ss_pred EE--CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe--CCCEEEEECC-CCCEEEEEECCC
Confidence 65 367899999986 56 32 22222 234577899999998766633 5689999997 677777787777
Q ss_pred CCEEEEEEe-CCCCEEEEEECCC
Q psy4876 555 ARVLNLAMS-PDETTVLSAGADE 576 (609)
Q Consensus 555 ~~V~~l~~s-pdg~~L~s~s~Dg 576 (609)
..+.+++|+ +++..|+.++..+
T Consensus 271 ~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 271 KQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp SBEEEEEEESTTSCEEEEEEBCT
T ss_pred CCcEEEEEecCCCCEEEEEecCC
Confidence 789999998 8988776655443
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.31 E-value=7.2e-11 Score=123.70 Aligned_cols=172 Identities=9% Similarity=-0.050 Sum_probs=134.3
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe-----------eEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEc
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK-----------KCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDV 404 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~-----------~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~ 404 (609)
..+..+++++...++++|+.++ +.||++.+.. ..... .+.. |..++|++.+|+++ .+|.|++||+
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCFHGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEEETTEEEEE-ESSEEEEEES
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEECCCEEEEE-cCCcEEEEEc
Confidence 3689999999999999999975 6669865332 11222 3556 99999988999998 8899999999
Q ss_pred CCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 405 RSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 405 ~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
++.. .......|...+.++.+.+. .+++++.||.|.+||+..+ .... +...|+|++|+|.| + +.
T Consensus 114 ~sl~-~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~------~~~~----~~~~Vs~v~WSpkG--~-~v 177 (388)
T 1xip_A 114 EELS-EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTK------STKQ----LAQNVTSFDVTNSQ--L-AV 177 (388)
T ss_dssp SSTT-CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTC------CEEE----EEESEEEEEECSSE--E-EE
T ss_pred hhhh-ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCC------cccc----ccCCceEEEEcCCc--e-EE
Confidence 8865 45556678888998888764 3888999999999999976 2222 44689999999998 3 34
Q ss_pred EeccCCCeEEEEECCCCce--eEEE------c----CCCCeEEEEEcCCCCeEEEEE
Q psy4876 485 GGGTADRHIYFWNVSSGAC--LDSI------D----TKSQVCALLWNSDYKELVSAH 529 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t~~~--~~~~------~----~~~~v~sl~~s~~g~~l~~~s 529 (609)
| ..||.+++|+...+.+ ..++ . +...|.++.|.+++.++++-.
T Consensus 178 g--~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 178 L--LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp E--ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred E--EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 4 3799999999888776 5666 2 345899999999999998754
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-09 Score=108.80 Aligned_cols=224 Identities=12% Similarity=0.116 Sum_probs=149.0
Q ss_pred EEEEEecCC-C-eEEEE-cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHF-N-VLAVA-LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~-~-lla~s-~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
-....|+++ + ++.+. .++.|+.||..+ +... .+.....+.+++++++|+
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~-------------------------~~~~---~~~~~~~~~~i~~~~dG~ 66 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFT-------------------------KQVQ---RVTMDAPVSSVALRQSGG 66 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTT-------------------------CCEE---EEECSSCEEEEEEBTTSS
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCC-------------------------CcEE---EEeCCCceEEEEECCCCC
Confidence 456889985 4 44444 468999999987 4432 222457799999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecC----CCCceEEEEec--CCEEEEEecC---------CeEEEEEcCCCCeeEEE
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDG----HDVRVGALAWN--TYILSSGSRC---------GNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~----h~~~V~~l~~~--~~~L~sgs~d---------g~I~iwd~~~~~~~~~~ 413 (609)
+++ +. ++.|.+||..+++....... ....+..++++ ++++++.... ....+|.+..... ...
T Consensus 67 l~v-~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~ 143 (297)
T 3g4e_A 67 YVA-TI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKK 143 (297)
T ss_dssp EEE-EE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEE
T ss_pred EEE-EE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEE
Confidence 554 44 46799999988765433322 12457788884 6665544321 2234444443222 222
Q ss_pred EccCCCCeEEEEEccCCCEEEE-EeCCCcEEEEeCC--CCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCC
Q psy4876 414 LQNHTQEVCGLKWSPDGRYLAS-GGNDNLLNIWSGV--PGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD 490 (609)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~las-gs~Dg~I~iwd~~--~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~D 490 (609)
+..+......++|+||++.|+. .+.++.|.+||+. ++.. ...+....+..+......++++++| +++++.. .+
T Consensus 144 ~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~-~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~--~~ 219 (297)
T 3g4e_A 144 YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI-SNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACY--NG 219 (297)
T ss_dssp EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE-EEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEE--TT
T ss_pred EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc-cCcEEEEECCCCCCCCCeeEECCCC-CEEEEEc--CC
Confidence 3334456789999999987654 4557889999874 4421 0011223333344667899999998 5666543 57
Q ss_pred CeEEEEECCCCceeEEEcCC-CCeEEEEEc-CCCCeEEEEEe
Q psy4876 491 RHIYFWNVSSGACLDSIDTK-SQVCALLWN-SDYKELVSAHG 530 (609)
Q Consensus 491 g~I~iwd~~t~~~~~~~~~~-~~v~sl~~s-~~g~~l~~~sG 530 (609)
+.|.+||..+++.+..+... ..+++++|. |+++.|++++.
T Consensus 220 ~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 88999999999999988876 589999998 89888887664
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.6e-10 Score=118.46 Aligned_cols=264 Identities=9% Similarity=0.058 Sum_probs=177.2
Q ss_pred CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEe----------CCCe
Q psy4876 289 GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGT----------SLGT 358 (609)
Q Consensus 289 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs----------~dg~ 358 (609)
+.|.++|..+ .+....... ...+ .++++|||++|+++. .++.
T Consensus 99 ~~VsVID~~t-------------------------~~vv~~I~v-G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~ 150 (426)
T 3c75_H 99 TQQFVIDGST-------------------------GRILGMTDG-GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDY 150 (426)
T ss_dssp EEEEEEETTT-------------------------TEEEEEEEE-CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred CeEEEEECCC-------------------------CEEEEEEEC-CCCC--ceEECCCCCEEEEEeccccccccCCCCCE
Confidence 6899999988 444333333 3334 899999999888876 3678
Q ss_pred EEEEeCCCCeeEEEecCC-------CCceEEEEe--cCCEEEEEec--CCeEEEEEcCCCCeeEEEEccCCCCeEEEEEc
Q psy4876 359 VQLWDVSAKKKCRTMDGH-------DVRVGALAW--NTYILSSGSR--CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWS 427 (609)
Q Consensus 359 I~iwd~~~~~~~~~l~~h-------~~~V~~l~~--~~~~L~sgs~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 427 (609)
|.++|..+++.+..+.-. ......+.+ ++++|+++.. ++.|.+.|+.+. ..+..+.-.. . ....
T Consensus 151 VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~-kvv~~I~v~g--~--~~~~ 225 (426)
T 3c75_H 151 VEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK-TFDRMLDVPD--C--YHIF 225 (426)
T ss_dssp EEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT-EEEEEEECCS--E--EEEE
T ss_pred EEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC-eEEEEEEcCC--c--eeec
Confidence 999999999988877521 122345566 6788888764 578999999987 4555554321 1 2334
Q ss_pred cCC-CEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccE-EEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee-
Q psy4876 428 PDG-RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAV-KAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL- 504 (609)
Q Consensus 428 pdg-~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V-~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~- 504 (609)
|+| ..+++.+.||.+.+.++..++...... ..+.....++ ..+.+.+++..++++. ..+.|.+.|+..+...
T Consensus 226 p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~--~~~~v~~~p~~~~~~~~~dg~~~~~~s---~~g~V~ViD~~~~~~~v 300 (426)
T 3c75_H 226 PASPTVFYMNCRDGSLARVDFADGETKVTNT--EVFHTEDELLINHPAFSLRSGRLVWPT---YTGKIFQADLTAEGATF 300 (426)
T ss_dssp EEETTEEEEEETTSSEEEEECCTTCCEEEEC--CCCSCTTSCBCSCCEECTTTCEEEEEB---TTSEEEEEEECSSCEEE
T ss_pred cCCCcEEEEEcCCCCEEEEECCCCcEEEEee--eeeccCCCceeeEeeecCCCCEEEEEe---CCCcEEEEeccCCceEE
Confidence 433 556667778888888885442110000 1111111121 2356788888777764 5789999998755422
Q ss_pred -EEEcC-----------CCCeEEEEEcCCCCeEEEEEec--------CCCeEEEEECCCCceEEEEeCCCCCEEEEEEeC
Q psy4876 505 -DSIDT-----------KSQVCALLWNSDYKELVSAHGF--------AQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP 564 (609)
Q Consensus 505 -~~~~~-----------~~~v~sl~~s~~g~~l~~~sG~--------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp 564 (609)
..+.. ......++++++++.++++... ..+.|.++|..+.+.+..+... ....+|+|+|
T Consensus 301 ~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~sp 379 (426)
T 3c75_H 301 RAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQ 379 (426)
T ss_dssp CCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECC
T ss_pred eeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEcc
Confidence 11111 0122237899999988886431 1368999999999999988632 2578999999
Q ss_pred CCC-EEEEEE-CCCCEEEEEcCCCccchh
Q psy4876 565 DET-TVLSAG-ADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 565 dg~-~L~s~s-~Dg~I~iWdl~~~~~~~k 591 (609)
||+ +++++. .++.|.++|+.+.+..+.
T Consensus 380 Dg~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 380 DAEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp SSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 999 888888 599999999999887655
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-09 Score=110.42 Aligned_cols=226 Identities=10% Similarity=0.032 Sum_probs=154.0
Q ss_pred CCCCeEEEEEccCCC-EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCee
Q psy4876 334 GNENVCSVAWIQEGY-MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 334 h~~~V~~v~~spdg~-~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
.........|+++|+ +++++..++.|..|+. +++ ...+..+...+..++++ ++++++...++.|.+|+.. +.
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-- 117 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-- 117 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC--
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC--
Confidence 445677899999998 5666777899999998 444 44555566778899994 6766655556789999986 32
Q ss_pred EEEEccC-----CCCeEEEEEccCCCEEEE----EeC-------------CCcEEEEeCCCCCCCCCccceEeecCCccc
Q psy4876 411 VALLQNH-----TQEVCGLKWSPDGRYLAS----GGN-------------DNLLNIWSGVPGQHTFSTQPIHSLSRHQAA 468 (609)
Q Consensus 411 ~~~~~~h-----~~~V~~l~~spdg~~las----gs~-------------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 468 (609)
...+..+ ...+..++++++|+++++ |.. .+.|+.||..++. ... +. ....
T Consensus 118 ~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~------~~~-~~-~~~~ 189 (305)
T 3dr2_A 118 AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP------LQR-MA-DLDH 189 (305)
T ss_dssp EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC------CEE-EE-EESS
T ss_pred EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc------EEE-Ee-cCCC
Confidence 2222111 134678999999998886 332 2568888876662 222 22 3345
Q ss_pred EEEEEEcCCCCcEEEEEeccC-----CCeEEEEECCCCcee--EEEc--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEE
Q psy4876 469 VKAIAWCPWSPNVLASGGGTA-----DRHIYFWNVSSGACL--DSID--TKSQVCALLWNSDYKELVSAHGFAQNQLIIW 539 (609)
Q Consensus 469 V~~l~~sp~~~~llasggGs~-----Dg~I~iwd~~t~~~~--~~~~--~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iw 539 (609)
...++|+|++..++++.. . .+.|.+||+..+... ..+. .......++++++|+..++ + .+.|.+|
T Consensus 190 p~gl~~spdg~~lyv~~~--~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~---~~gv~~~ 263 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQT--PEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-S---GTGVCVF 263 (305)
T ss_dssp EEEEEECTTSSEEEEEEC--CC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-C---SSEEEEE
T ss_pred CcceEEcCCCCEEEEEec--CCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-c---CCcEEEE
Confidence 688999999976766642 2 378999998765411 1111 1234567899999995443 1 3459999
Q ss_pred ECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEE
Q psy4876 540 KYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRL 580 (609)
Q Consensus 540 d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~i 580 (609)
+. .++.+..+..+. .+.+++|+++++.|+.++.++..++
T Consensus 264 ~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 264 DS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp CT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred CC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 97 677777776555 5899999999998988887654443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-09 Score=115.39 Aligned_cols=247 Identities=12% Similarity=0.037 Sum_probs=168.2
Q ss_pred EEEecCCC--eEEEE----------cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec------CC
Q psy4876 274 LIDWSHFN--VLAVA----------LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE------GN 335 (609)
Q Consensus 274 ~l~wsp~~--lla~s----------~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------h~ 335 (609)
.+.++||+ ++++. .++.|.++|..+ .+......+. ..
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t-------------------------~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT-------------------------FLPIADIELPDAPRFLVG 176 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-------------------------CCEEEEEEETTCCCCCBS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-------------------------CcEEEEEECCCccccccC
Confidence 48889986 33332 367899999988 4443333221 12
Q ss_pred CCeEEEEEccCCCEEEEEeC--CCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTS--LGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~--dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
.....++|+|||++|+++.. ++.|.+.|+.+++.+..+..... ..+.. ....+++.+.||.+.+.+...+ ....
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~-~v~~ 253 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNCRDGSLARVDFADG-ETKV 253 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSSEEEEECCTT-CCEE
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEcCCCCEEEEECCCC-cEEE
Confidence 34567899999999999874 57899999999999888874221 22222 3477778888999999998544 2332
Q ss_pred EE----ccCCCCe-EEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-------CcccEEEEEEcCCCCc
Q psy4876 413 LL----QNHTQEV-CGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-------HQAAVKAIAWCPWSPN 480 (609)
Q Consensus 413 ~~----~~h~~~V-~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-------h~~~V~~l~~sp~~~~ 480 (609)
.. .....++ ..+.|.+++..++..+..+.|.+.|+....... ......... .......++++|++..
T Consensus 254 ~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v-~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~r 332 (426)
T 3c75_H 254 TNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF-RAPIEALTEAERADDWRPGGWQQTAYHRQSDR 332 (426)
T ss_dssp EECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE-CCCEESSCTTTGGGTEEECSSSCEEEEGGGTE
T ss_pred EeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE-eeeeeeccccccccccccCCceeeEEcCCCCE
Confidence 21 1111111 235789998888887888999999987542100 000000000 0111223689999988
Q ss_pred EEEEEecc-------CCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceEEEE
Q psy4876 481 VLASGGGT-------ADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYK-ELVSAHGFAQNQLIIWKYPSLVKVAEL 550 (609)
Q Consensus 481 llasggGs-------~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~-~l~~~sG~~dg~I~Iwd~~~~~~~~~l 550 (609)
++++.... .++.|.++|+.+.+.+..+........+.|+++++ .++++ ...++.|.|+|..+++.+..+
T Consensus 333 lyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~-n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 333 IYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYAL-SAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEE-ETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEE-cCCCCeEEEEECCCCCEEEEe
Confidence 88764210 13689999999999999998877899999999999 67665 346899999999999999887
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.7e-09 Score=110.82 Aligned_cols=230 Identities=10% Similarity=-0.038 Sum_probs=152.9
Q ss_pred eEEEEEecCCC-eEEEEc-CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 271 YLNLIDWSHFN-VLAVAL-GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 271 ~v~~l~wsp~~-lla~s~-dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
....|+|++++ ++++.. ++.|++||..+ +.+..+... ..... ++|+++++
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~-------------------------g~~~~~~~~--~~~~~-ia~~~~g~ 183 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDD-------------------------NKVTTVHPG--FKGGK-PAVTKDKQ 183 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTT-------------------------TEEEEEEET--CCBCB-CEECTTSS
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCC-------------------------CEEEEeecc--CCCCc-eeEecCCC
Confidence 35669999987 444443 58999999987 555444332 22233 99999999
Q ss_pred EEEEEeCCC--eEEEEeCCCCeeEEEe----cCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEE---EccC
Q psy4876 349 MLGVGTSLG--TVQLWDVSAKKKCRTM----DGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVAL---LQNH 417 (609)
Q Consensus 349 ~Lasgs~dg--~I~iwd~~~~~~~~~l----~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~---~~~h 417 (609)
.|+++..++ .|.+|+...+.....+ ......+.+++++ ...|+.+..++.|+.||..+....... ..++
T Consensus 184 ~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~ 263 (409)
T 3hrp_A 184 RVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS 263 (409)
T ss_dssp EEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC
T ss_pred cEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC
Confidence 999888766 7999998766544444 2245667788885 355666777889999999876422210 1122
Q ss_pred CCCe--EEEEEccC-CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC---------------cccEEEEEEcCCCC
Q psy4876 418 TQEV--CGLKWSPD-GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH---------------QAAVKAIAWCPWSP 479 (609)
Q Consensus 418 ~~~V--~~l~~spd-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h---------------~~~V~~l~~sp~~~ 479 (609)
...- ..++|+|+ +.++++-..++.|+.|+.... +..+.++ -.....++++++|.
T Consensus 264 ~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~ 335 (409)
T 3hrp_A 264 LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN 335 (409)
T ss_dssp CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC
T ss_pred CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC
Confidence 2222 39999995 656666666789999987642 1222222 23478999999986
Q ss_pred cEEEEEecc-CCCeEEEEECCCCceeEEEcC---------------CCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 480 NVLASGGGT-ADRHIYFWNVSSGACLDSIDT---------------KSQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 480 ~llasggGs-~Dg~I~iwd~~t~~~~~~~~~---------------~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
++++. + .++.|+.||+.++........ -.....+++++++..+++ ...++.|+.+++
T Consensus 336 -lyvad--~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa--d~~n~~Ir~i~~ 408 (409)
T 3hrp_A 336 -FYIVD--GFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIA--EAWGKAIRKYAV 408 (409)
T ss_dssp -EEEEE--TTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE--ESTTCEEEEEEE
T ss_pred -EEEEe--CCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEE--ECCCCeEEEEEe
Confidence 66664 4 588999999887765433322 135889999999765555 446777777654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.21 E-value=9.6e-10 Score=119.58 Aligned_cols=305 Identities=10% Similarity=0.045 Sum_probs=206.2
Q ss_pred cccCCccCCceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccc------cc------------
Q psy4876 260 ILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKC------IQ------------ 321 (609)
Q Consensus 260 il~ap~~~~~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~------~~------------ 321 (609)
...+|+-.|+|| ++.++|..|.|+|+-+-+....+++-+|+++...-+... +.
T Consensus 5 ~~~~~g~~d~~~---------~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~ 75 (595)
T 1fwx_A 5 GSVAPGQLDDYY---------GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLA 75 (595)
T ss_dssp CCCCTTCCCSEE---------EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHH
T ss_pred ccCCCCCcccEE---------EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhh
Confidence 445677788888 345688899999999999888888888888766555421 10
Q ss_pred cccceeeeeeecCCCCeEEEEE---ccCCCEEEEEeC-CCeEEEEeCCCCeeEEEecC-CCCceEEEEe----cCCEEEE
Q psy4876 322 DNRAIDHLMDLEGNENVCSVAW---IQEGYMLGVGTS-LGTVQLWDVSAKKKCRTMDG-HDVRVGALAW----NTYILSS 392 (609)
Q Consensus 322 ~~~~~~~l~~~~h~~~V~~v~~---spdg~~Lasgs~-dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~----~~~~L~s 392 (609)
..+.. .... .+..--.+++ .+||++|++... ++.|.+.|+.+.++...+.- .......+++ ++.++++
T Consensus 76 ~~g~~--~~~~-gd~hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~ 152 (595)
T 1fwx_A 76 ANGKR--IHDN-GDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFC 152 (595)
T ss_dssp HTTCS--SCCC-CCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEE
T ss_pred ccCce--eccc-CCCCccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEE
Confidence 01110 0011 1111233444 238888888765 45799999999998885542 2244666665 5778877
Q ss_pred Ee------------------cCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCC--------------
Q psy4876 393 GS------------------RCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDN-------------- 440 (609)
Q Consensus 393 gs------------------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg-------------- 440 (609)
++ .++.+.+.|..+. .....+.--. ....++++|+|+++++.+.+.
T Consensus 153 ~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~-~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~ 230 (595)
T 1fwx_A 153 NGEDETPLVNDGTNMEDVANYVNVFTAVDADKW-EVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM 230 (595)
T ss_dssp EECSCEESSCSSSSTTCGGGEEEEEEEEETTTT-EEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred ecccccccCCCCcccccccccCceEEEEECCCC-eEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence 74 3467999999986 3555544222 456788999999998888543
Q ss_pred ------------------------cEEEEeCCCCCCCCCccc-eEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEE
Q psy4876 441 ------------------------LLNIWSGVPGQHTFSTQP-IHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYF 495 (609)
Q Consensus 441 ------------------------~I~iwd~~~~~~~~~~~~-~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~i 495 (609)
.|.|.|..+... .. +..+... ....++.++|||+++++++. .+.+|.+
T Consensus 231 d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~----~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~--~s~~VsV 303 (595)
T 1fwx_A 231 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS----SLFTRYIPIA-NNPHGCNMAPDKKHLCVAGK--LSPTVTV 303 (595)
T ss_dssp EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGC----CSSEEEEEEE-SSCCCEEECTTSSEEEEECT--TSSBEEE
T ss_pred ceEEEeeccceeEeccCCCeeEECcEEEEeCcccCC----ceeEEEEecC-CCceEEEEcCCCCEEEEeCC--CCCeEEE
Confidence 366666665100 22 2333221 23467999999998888874 7899999
Q ss_pred EECCCCc------------eeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC----------CceEEEEeCC
Q psy4876 496 WNVSSGA------------CLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS----------LVKVAELHGH 553 (609)
Q Consensus 496 wd~~t~~------------~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~----------~~~~~~l~~h 553 (609)
+|+.+.+ .+..+........++|+++| .++++ -+-+++|.+||+.. ...+..+..|
T Consensus 304 id~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t-~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~ 381 (595)
T 1fwx_A 304 LDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTS-LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH 381 (595)
T ss_dssp EEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEE-ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS
T ss_pred EECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEE-EecCCcEEEEEhhHhhhhhcccccceeEEEeecc
Confidence 9999653 45566677789999999999 66555 56899999999976 5667777666
Q ss_pred CCCE-----EEEEEeCCCCEEEEEEC---CCCE----------EEEEcCCCc
Q psy4876 554 SARV-----LNLAMSPDETTVLSAGA---DETL----------RLWKIFEKV 587 (609)
Q Consensus 554 ~~~V-----~~l~~spdg~~L~s~s~---Dg~I----------~iWdl~~~~ 587 (609)
-.+- .++.++|||++|+++.. |..+ .++|+.+++
T Consensus 382 yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 382 YQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp SCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 4422 22345799999998864 4432 788996544
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=3e-08 Score=101.72 Aligned_cols=220 Identities=11% Similarity=-0.028 Sum_probs=144.5
Q ss_pred EEEEEecCC-C-eEEEE-cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHF-N-VLAVA-LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~-~-lla~s-~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
.....|+++ + ++.++ .++.|++||..+ +.... +.....+.+++|+++|+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~-------------------------~~~~~---~~~~~~v~~i~~~~dg~ 102 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLAS-------------------------GRKTV---HALPFMGSALAKISDSK 102 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTT-------------------------TEEEE---EECSSCEEEEEEEETTE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCC-------------------------CcEEE---EECCCcceEEEEeCCCe
Confidence 456899996 4 44444 578999999887 44332 22346799999999998
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecC----CCCceEEEEec--CCEEEEEec------CCeEEEEEcCCCCeeEEEEcc
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDG----HDVRVGALAWN--TYILSSGSR------CGNIVHHDVRSRDHKVALLQN 416 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~----h~~~V~~l~~~--~~~L~sgs~------dg~I~iwd~~~~~~~~~~~~~ 416 (609)
++++ +.+ .|.+||..+++....... ....+..+.++ +.++++... .+.|..++ ++ . ...+..
T Consensus 103 l~v~-~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~-~~~~~~ 176 (326)
T 2ghs_A 103 QLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-K-VTKLFA 176 (326)
T ss_dssp EEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-E-EEEEEE
T ss_pred EEEE-ECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-c-EEEeeC
Confidence 7765 444 499999988765433321 12457888884 566554432 24566666 33 2 223333
Q ss_pred CCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCC--CC-CCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCe
Q psy4876 417 HTQEVCGLKWSPDGRYLASG-GNDNLLNIWSGV--PG-QHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH 492 (609)
Q Consensus 417 h~~~V~~l~~spdg~~lasg-s~Dg~I~iwd~~--~~-~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~ 492 (609)
+.....+++|+|||+.|+.+ +.++.|.+||+. ++ ... ....+..+......+..++++++|. ++++.. .++.
T Consensus 177 ~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~-~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~--~~~~ 252 (326)
T 2ghs_A 177 DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG-KAEVFIDSTGIKGGMDGSVCDAEGH-IWNARW--GEGA 252 (326)
T ss_dssp EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS-CCEEEEECTTSSSEEEEEEECTTSC-EEEEEE--TTTE
T ss_pred CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc-CceEEEECCCCCCCCCeeEECCCCC-EEEEEe--CCCE
Confidence 33457899999999877555 456899999986 33 211 0112223333445678899999884 555432 4688
Q ss_pred EEEEECCCCceeEEEcCCC-CeEEEEEc-CCCCeEEEEEe
Q psy4876 493 IYFWNVSSGACLDSIDTKS-QVCALLWN-SDYKELVSAHG 530 (609)
Q Consensus 493 I~iwd~~t~~~~~~~~~~~-~v~sl~~s-~~g~~l~~~sG 530 (609)
|.+||. +++.+..+.... .+.+++|+ +++..|++++.
T Consensus 253 v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 253 VDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 999998 677777776554 79999998 88888877653
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.2e-09 Score=119.67 Aligned_cols=239 Identities=13% Similarity=0.045 Sum_probs=158.2
Q ss_pred eeEEEEEecCCC-eEEEEc--C----CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEE
Q psy4876 270 YYLNLIDWSHFN-VLAVAL--G----GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVA 342 (609)
Q Consensus 270 ~~v~~l~wsp~~-lla~s~--d----g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~ 342 (609)
+.+..++||||+ .||.+. + ..|++||+.+ +..... .+ +......++
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t-------------------------g~~~~~-~~-~~~k~~~~~ 181 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES-------------------------KQPLET-PL-KDVKFSGIS 181 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT-------------------------CSEEEE-EE-EEEESCCCE
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC-------------------------CCCCcc-cc-CCceeccEE
Confidence 468889999997 555332 2 4799999998 554332 22 111135789
Q ss_pred EccCCCEEEEEeCCC-------------eEEEEeCCCCe----eEEEecC-CCCceEEEEe--cCCEEEEEec----CCe
Q psy4876 343 WIQEGYMLGVGTSLG-------------TVQLWDVSAKK----KCRTMDG-HDVRVGALAW--NTYILSSGSR----CGN 398 (609)
Q Consensus 343 ~spdg~~Lasgs~dg-------------~I~iwd~~~~~----~~~~l~~-h~~~V~~l~~--~~~~L~sgs~----dg~ 398 (609)
|+ ||+.|+.++.+. .|.+|++.++. ++..... |...+..+.| ++++|+.... ...
T Consensus 182 Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 260 (693)
T 3iuj_A 182 WL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNR 260 (693)
T ss_dssp EE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCE
T ss_pred Ee-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcE
Confidence 99 999999888774 39999998754 2333333 4556778888 5776654432 248
Q ss_pred EEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeC-C---CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEE
Q psy4876 399 IVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGN-D---NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAW 474 (609)
Q Consensus 399 I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~-D---g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 474 (609)
|+++|+.++......+..+....... |+++|..|+..++ + +.|.++|+.++.. .....+..|...+. .|
T Consensus 261 i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~----~~~~~l~~~~~~~~--~~ 333 (693)
T 3iuj_A 261 LYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP----AHWRDLIPERQQVL--TV 333 (693)
T ss_dssp EEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG----GGCEEEECCCSSCE--EE
T ss_pred EEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc----cccEEEecCCCCEE--EE
Confidence 99999987644455666666666555 6677776655554 3 5799999987631 12344555665554 88
Q ss_pred cCCCCcEEEEEeccCCC--eEEEEECCCCceeEEEcC--CCCeEEEEEcCCCCeEEEEEec--CCCeEEEEECCCCce
Q psy4876 475 CPWSPNVLASGGGTADR--HIYFWNVSSGACLDSIDT--KSQVCALLWNSDYKELVSAHGF--AQNQLIIWKYPSLVK 546 (609)
Q Consensus 475 sp~~~~llasggGs~Dg--~I~iwd~~t~~~~~~~~~--~~~v~sl~~s~~g~~l~~~sG~--~dg~I~Iwd~~~~~~ 546 (609)
++++..|+++.. .++ .|++||+..+ ....+.. ...+..+.+++++..++....+ .-+.|+.||+.+++.
T Consensus 334 s~~g~~lv~~~~--~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 334 HSGSGYLFAEYM--VDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEETTEEEEEEE--ETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEECCEEEEEEE--ECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 999887777653 444 7899998744 4455543 3457778888898888765421 237899999877653
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=7.8e-09 Score=116.95 Aligned_cols=239 Identities=10% Similarity=0.052 Sum_probs=164.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCC-C----Cce-EEEEecCCEEEEEec------CCeEEEEEcCCCCeeEEE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGH-D----VRV-GALAWNTYILSSGSR------CGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h-~----~~V-~~l~~~~~~L~sgs~------dg~I~iwd~~~~~~~~~~ 413 (609)
++..|++++.|+.|..+|..+|+.+..+..+ . ..+ ......+..+++++. +|.|+.+|..++. .+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~-~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGE-RKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC-EEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCc-EEEE
Confidence 4668888999999999999999998887754 2 111 112223455555553 6899999999985 4544
Q ss_pred EccCCC--------------------------------CeEEEEEccCCCEEEEEeCCC-------------------cE
Q psy4876 414 LQNHTQ--------------------------------EVCGLKWSPDGRYLASGGNDN-------------------LL 442 (609)
Q Consensus 414 ~~~h~~--------------------------------~V~~l~~spdg~~lasgs~Dg-------------------~I 442 (609)
+..... ....++++|++.+++.++.++ .|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 432211 113578889888888887664 49
Q ss_pred EEEeCCCCCCCCCccceEeecC--Cc-------ccEEEEEEcCCCC--cEEEEEeccCCCeEEEEECCCCceeEEEcCCC
Q psy4876 443 NIWSGVPGQHTFSTQPIHSLSR--HQ-------AAVKAIAWCPWSP--NVLASGGGTADRHIYFWNVSSGACLDSIDTKS 511 (609)
Q Consensus 443 ~iwd~~~~~~~~~~~~~~~~~~--h~-------~~V~~l~~sp~~~--~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~ 511 (609)
..+|..++ +.+..+.. |. .....+....+|. .+++.+ +.+|.|+++|..+|+.+..+....
T Consensus 286 ~AlD~~TG------~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~--~~~G~l~~lD~~tG~~l~~~~~~~ 357 (677)
T 1kb0_A 286 VALDPDTG------KYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHA--PKNGFFFVLDRTNGKFISAKNFVP 357 (677)
T ss_dssp EEECTTTC------CEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEEC--CTTSEEEEEETTTCCEEEEEESSC
T ss_pred EEEECCCC------CEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEE--CCCCEEEEEECCCCCEeccccccc
Confidence 99999998 44443322 21 1122223333553 455554 589999999999999987665321
Q ss_pred ------------Ce------------------------EEEEEcCCCCeEEEEEec------------------------
Q psy4876 512 ------------QV------------------------CALLWNSDYKELVSAHGF------------------------ 531 (609)
Q Consensus 512 ------------~v------------------------~sl~~s~~g~~l~~~sG~------------------------ 531 (609)
.+ ..++|+|+...+++....
T Consensus 358 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 437 (677)
T 1kb0_A 358 VNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSG 437 (677)
T ss_dssp CSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGG
T ss_pred cCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccc
Confidence 01 156889998888875431
Q ss_pred -----------------CCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 532 -----------------AQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 532 -----------------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
..+.|..||..+++.+..+. +..++....+..++.+++.++.||.|++||..+++...+...
T Consensus 438 ~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 438 TGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp GTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 12789999999999988875 334455666777888999999999999999999987765543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.14 E-value=7.8e-08 Score=100.20 Aligned_cols=264 Identities=10% Similarity=0.016 Sum_probs=167.4
Q ss_pred CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecC--------CCCeEEEEEccCCCEEEE
Q psy4876 281 NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEG--------NENVCSVAWIQEGYMLGV 352 (609)
Q Consensus 281 ~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h--------~~~V~~v~~spdg~~Las 352 (609)
.+++++.++.|+.+|.++ ++..-...+.. ...+.+ ....++..|++
T Consensus 55 ~v~~~~~~g~v~a~d~~t-------------------------G~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v 108 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADD-------------------------GKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYI 108 (376)
T ss_dssp EEEEECTTSEEEEEETTT-------------------------CCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEE
T ss_pred EEEEEcCCCeEEEEEccC-------------------------CceeeeecCccccccccccCccccc-CceEeCCEEEE
Confidence 366677788999999987 44332222211 222322 22234567888
Q ss_pred EeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCe-----EEEEEc
Q psy4876 353 GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEV-----CGLKWS 427 (609)
Q Consensus 353 gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----~~l~~s 427 (609)
++.++.|..+|..+++.+................+..++.++.++.|..+|..++. .+.......... ......
T Consensus 109 ~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~-~~W~~~~~~~~~~~~~~~~~~~~ 187 (376)
T 3q7m_A 109 GSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGA-VKWTVNLDMPSLSLRGESAPTTA 187 (376)
T ss_dssp EETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCC-EEEEEECCC-----CCCCCCEEE
T ss_pred EcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCc-EEEEEeCCCCceeecCCCCcEEE
Confidence 99999999999999998877665433333334456788889999999999998874 444443322111 112222
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcc--c--------E-EEEEEcCCCCcEEEEEeccCCCeEEEE
Q psy4876 428 PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA--A--------V-KAIAWCPWSPNVLASGGGTADRHIYFW 496 (609)
Q Consensus 428 pdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~--~--------V-~~l~~sp~~~~llasggGs~Dg~I~iw 496 (609)
+..+++++.++.|..+|..++ +.+........ . + ...... +..+++ + +.++.|..+
T Consensus 188 --~~~v~~g~~~g~l~~~d~~tG------~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~v~~-~--~~~g~l~~~ 254 (376)
T 3q7m_A 188 --FGAAVVGGDNGRVSAVLMEQG------QMIWQQRISQATGSTEIDRLSDVDTTPVVV--NGVVFA-L--AYNGNLTAL 254 (376)
T ss_dssp --TTEEEECCTTTEEEEEETTTC------CEEEEEECCC-----------CCCCCCEEE--TTEEEE-E--CTTSCEEEE
T ss_pred --CCEEEEEcCCCEEEEEECCCC------cEEEEEecccCCCCcccccccccCCCcEEE--CCEEEE-E--ecCcEEEEE
Confidence 446778888999999999988 34333321110 0 0 001111 233444 3 368999999
Q ss_pred ECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC-CCCCEEEEEEeCCCCEEEEEECC
Q psy4876 497 NVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG-HSARVLNLAMSPDETTVLSAGAD 575 (609)
Q Consensus 497 d~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~s~s~D 575 (609)
|..+|+.+....... ...+.. ++..+++++ .++.|..+|..+++.+..... ....+..... .+..|+.++.+
T Consensus 255 d~~tG~~~w~~~~~~-~~~~~~--~~~~l~~~~--~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~ 327 (376)
T 3q7m_A 255 DLRSGQIMWKRELGS-VNDFIV--DGNRIYLVD--QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSE 327 (376)
T ss_dssp ETTTCCEEEEECCCC-EEEEEE--ETTEEEEEE--TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTT
T ss_pred ECCCCcEEeeccCCC-CCCceE--ECCEEEEEc--CCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCC
Confidence 999999887766443 333433 355666643 689999999999998877652 2222333333 35678889999
Q ss_pred CCEEEEEcCCCccchh
Q psy4876 576 ETLRLWKIFEKVKSKK 591 (609)
Q Consensus 576 g~I~iWdl~~~~~~~k 591 (609)
|.|.++|..+++..-+
T Consensus 328 g~l~~~d~~tG~~~~~ 343 (376)
T 3q7m_A 328 GYLHWINVEDGRFVAQ 343 (376)
T ss_dssp SEEEEEETTTCCEEEE
T ss_pred CeEEEEECCCCcEEEE
Confidence 9999999988876543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-08 Score=104.69 Aligned_cols=241 Identities=9% Similarity=-0.005 Sum_probs=152.3
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEe--CCCeEEEEeCCCCeeEEEec-------CCCCceEEEEec--CCEEEE
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGT--SLGTVQLWDVSAKKKCRTMD-------GHDVRVGALAWN--TYILSS 392 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs--~dg~I~iwd~~~~~~~~~l~-------~h~~~V~~l~~~--~~~L~s 392 (609)
+.++.+.++. ..+..|+++++|+.+++.. .++.++||.+.+++. ..+. .|-..+..++++ +.++++
T Consensus 7 g~~~~v~~~~--~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~ 83 (343)
T 2qe8_A 7 DRLEVVAELS--LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWML 83 (343)
T ss_dssp -CCEEEEEES--SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEE
T ss_pred ceeEEEEEcC--CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEE
Confidence 4556666653 6899999999999888764 234355565545543 3221 345678999995 444444
Q ss_pred Eec-----CCeEEEEEcCCCCeeEEEEcc------CCCCeEEEEEccCCCEE-EEEe---CCCcEEEEeCCCCCCCCCcc
Q psy4876 393 GSR-----CGNIVHHDVRSRDHKVALLQN------HTQEVCGLKWSPDGRYL-ASGG---NDNLLNIWSGVPGQHTFSTQ 457 (609)
Q Consensus 393 gs~-----dg~I~iwd~~~~~~~~~~~~~------h~~~V~~l~~spdg~~l-asgs---~Dg~I~iwd~~~~~~~~~~~ 457 (609)
-.. ++.|.+||+.++. .+..+.. +...+..+++++++..+ ++.. .++.|.+||+.++.
T Consensus 84 D~g~~~~~~~~i~~~d~~tg~-~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~------ 156 (343)
T 2qe8_A 84 DNGNQSKSVPKLVAWDTLNNQ-LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL------ 156 (343)
T ss_dssp ECHHHHTSCCEEEEEETTTTE-EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC------
T ss_pred cCCCCcCCCCeEEEEECCCCe-EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC------
Confidence 333 5789999998763 4444432 22456899999865454 5444 57899999998763
Q ss_pred ceEeecCC-----------------------------cccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC---CCc---
Q psy4876 458 PIHSLSRH-----------------------------QAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS---SGA--- 502 (609)
Q Consensus 458 ~~~~~~~h-----------------------------~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~---t~~--- 502 (609)
....+..| ...+..|+|+|++..++++. .....|..++.. .+.
T Consensus 157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~--~~~~~l~~~~~~~~~~~~~~~ 234 (343)
T 2qe8_A 157 AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP--MHSTSMYRIKSADLSNLQLTD 234 (343)
T ss_dssp EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE--SSCSEEEEEEHHHHTCTTCCH
T ss_pred EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe--CCCCeEEEEEHHHhcCCCCCh
Confidence 22211111 12368899999997676664 244566666642 111
Q ss_pred -----eeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC-CCCCEEEEEEeCCCCEEEEEECCC
Q psy4876 503 -----CLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG-HSARVLNLAMSPDETTVLSAGADE 576 (609)
Q Consensus 503 -----~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~s~s~Dg 576 (609)
.+...........++++++|..+++ ...++.|.+||..+++....... +...+.+++|.++|.++++.+..+
T Consensus 235 ~~~~~~~~~~g~~g~pdgia~d~~G~l~va--~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 235 AELGSKIERYSEKPICDGISIDKDHNIYVG--DLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp HHHHTTCEEEEECCSCSCEEECTTCCEEEE--EGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred hhhhcceEecccCCCCceEEECCCCCEEEE--ccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence 0111222335678999999987766 45789999999856654333322 245689999999998888876544
Q ss_pred CE
Q psy4876 577 TL 578 (609)
Q Consensus 577 ~I 578 (609)
.+
T Consensus 313 ~~ 314 (343)
T 2qe8_A 313 HS 314 (343)
T ss_dssp GS
T ss_pred cc
Confidence 33
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-08 Score=102.61 Aligned_cols=225 Identities=12% Similarity=0.088 Sum_probs=146.4
Q ss_pred EEEEEecCCC--eEEEE-cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHFN--VLAVA-LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~~--lla~s-~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
.....|++++ ++.++ .++.|+.|+. + +....+.. +...+..++++++|+
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~-~-------------------------g~~~~~~~--~~~~~~gl~~d~dG~ 98 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRE-D-------------------------GTVDVLLD--ATAFTNGNAVDAQQR 98 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEET-T-------------------------SCEEEEEE--SCSCEEEEEECTTSC
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeC-C-------------------------CCEEEEeC--CCCccceeeECCCCC
Confidence 5678999985 44444 4689999987 3 33322221 556789999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCC----CCceEEEEe--cCCEEEE----Eec-------------CCeEEEEEcC
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGH----DVRVGALAW--NTYILSS----GSR-------------CGNIVHHDVR 405 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h----~~~V~~l~~--~~~~L~s----gs~-------------dg~I~iwd~~ 405 (609)
++++...++.|.+|+.. ++........ ...+..+++ ++.++++ |.. .+.|..+|..
T Consensus 99 l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 99 LVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 77665566789999986 5433222111 134566778 4677765 332 2567788876
Q ss_pred CCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCC------CcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCC
Q psy4876 406 SRDHKVALLQNHTQEVCGLKWSPDGRYLASGGND------NLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWS 478 (609)
Q Consensus 406 ~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~D------g~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~ 478 (609)
++. ... +. .......++|+||++.|+++... +.|++|++..+. . .....+ .........++++++|
T Consensus 178 ~g~-~~~-~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l---~~~~~~~~~~~~~pdgi~~d~~G 250 (305)
T 3dr2_A 178 GSP-LQR-MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-L---HDRRHFASVPDGLPDGFCVDRGG 250 (305)
T ss_dssp SCC-CEE-EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-E---EEEEEEECCSSSCCCSEEECTTS
T ss_pred CCc-EEE-Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-c---cCCeEEEECCCCCCCeEEECCCC
Confidence 553 222 22 34567899999999988777665 689999987541 0 001111 1123345678899988
Q ss_pred CcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 479 PNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 479 ~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
. ++++. .+.|.+||. .++.+..+.....+.+++|+++++.|++++ .+.|..+++
T Consensus 251 ~-lwv~~----~~gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~---~~~l~~~~~ 304 (305)
T 3dr2_A 251 W-LWSSS----GTGVCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITG---GPCLWMLPL 304 (305)
T ss_dssp C-EEECC----SSEEEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEE---TTEEEEEEC
T ss_pred C-EEEec----CCcEEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEc---CCeEEEEEC
Confidence 5 55542 345999998 577888887766789999999999888864 345554443
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-07 Score=99.07 Aligned_cols=259 Identities=12% Similarity=0.021 Sum_probs=163.1
Q ss_pred EecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeC
Q psy4876 276 DWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTS 355 (609)
Q Consensus 276 ~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~ 355 (609)
....+.+++++.++.|+.+|..+ ++..-...+. ......... .+..+++++.
T Consensus 100 ~~~~~~v~v~~~~g~l~a~d~~t-------------------------G~~~W~~~~~-~~~~~~p~~--~~~~v~v~~~ 151 (376)
T 3q7m_A 100 TVSGGHVYIGSEKAQVYALNTSD-------------------------GTVAWQTKVA-GEALSRPVV--SDGLVLIHTS 151 (376)
T ss_dssp EEETTEEEEEETTSEEEEEETTT-------------------------CCEEEEEECS-SCCCSCCEE--ETTEEEEECT
T ss_pred eEeCCEEEEEcCCCEEEEEECCC-------------------------CCEEEEEeCC-CceEcCCEE--ECCEEEEEcC
Confidence 33344577788899999999988 5543322222 111111122 2457888999
Q ss_pred CCeEEEEeCCCCeeEEEecCCCCce-----EEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCC-------CeEE
Q psy4876 356 LGTVQLWDVSAKKKCRTMDGHDVRV-----GALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ-------EVCG 423 (609)
Q Consensus 356 dg~I~iwd~~~~~~~~~l~~h~~~V-----~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-------~V~~ 423 (609)
++.|..+|..+++.+.......... ......+..++.+..+|.|..+|..++. .+........ .+..
T Consensus 152 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~ 230 (376)
T 3q7m_A 152 NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQ-MIWQQRISQATGSTEIDRLSD 230 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCC-EEEEEECCC-----------C
T ss_pred CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCc-EEEEEecccCCCCcccccccc
Confidence 9999999999998887766433221 2233346678888889999999998874 4444332110 0000
Q ss_pred EEEcc--CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 424 LKWSP--DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 424 l~~sp--dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
+.-.| .+..++.++.++.|..+|..++ +.+.... ......+... +..+++.. .++.|..+|..+|
T Consensus 231 ~~~~p~~~~~~v~~~~~~g~l~~~d~~tG------~~~w~~~--~~~~~~~~~~--~~~l~~~~---~~g~l~~~d~~tG 297 (376)
T 3q7m_A 231 VDTTPVVVNGVVFALAYNGNLTALDLRSG------QIMWKRE--LGSVNDFIVD--GNRIYLVD---QNDRVMALTIDGG 297 (376)
T ss_dssp CCCCCEEETTEEEEECTTSCEEEEETTTC------CEEEEEC--CCCEEEEEEE--TTEEEEEE---TTCCEEEEETTTC
T ss_pred cCCCcEEECCEEEEEecCcEEEEEECCCC------cEEeecc--CCCCCCceEE--CCEEEEEc---CCCeEEEEECCCC
Confidence 11111 2457788888999999999988 4444433 2234444443 34455543 6899999999999
Q ss_pred ceeEEEcC-C-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEE-EEEeCCCCEEEEEECCCCE
Q psy4876 502 ACLDSIDT-K-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLN-LAMSPDETTVLSAGADETL 578 (609)
Q Consensus 502 ~~~~~~~~-~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~-l~~spdg~~L~s~s~Dg~I 578 (609)
+.+..... . ..+..... .+..+++ +..+|.|+++|..+++.+.........+.. ... .+..|+.++.||.|
T Consensus 298 ~~~w~~~~~~~~~~~~~~~--~~~~l~v--~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l 371 (376)
T 3q7m_A 298 VTLWTQSDLLHRLLTSPVL--YNGNLVV--GDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTV 371 (376)
T ss_dssp CEEEEECTTTTSCCCCCEE--ETTEEEE--ECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCE
T ss_pred cEEEeecccCCCcccCCEE--ECCEEEE--EeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEE
Confidence 98877652 2 22222333 2456666 447899999999999988877654333322 222 25578889999999
Q ss_pred EEEE
Q psy4876 579 RLWK 582 (609)
Q Consensus 579 ~iWd 582 (609)
..|+
T Consensus 372 ~~~~ 375 (376)
T 3q7m_A 372 YSIT 375 (376)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9987
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.9e-08 Score=111.46 Aligned_cols=238 Identities=12% Similarity=0.065 Sum_probs=158.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCC--C---CceE-EEEecCCEEEEEe------cCCeEEEEEcCCCCeeEEE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGH--D---VRVG-ALAWNTYILSSGS------RCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h--~---~~V~-~l~~~~~~L~sgs------~dg~I~iwd~~~~~~~~~~ 413 (609)
.+..|++++.|+.|..+|..+|+.+-.+... . ..+. +....+..++.++ .+|.|+.||..++. .+..
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~-~~W~ 198 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGK-EAWR 198 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC-EEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCc-EEEE
Confidence 3568888999999999999999988776542 1 1111 1112234444443 36899999999985 4444
Q ss_pred EccC-------------------------------CCCeEEEEEccCCCEEEEEeCCCc-------------------EE
Q psy4876 414 LQNH-------------------------------TQEVCGLKWSPDGRYLASGGNDNL-------------------LN 443 (609)
Q Consensus 414 ~~~h-------------------------------~~~V~~l~~spdg~~lasgs~Dg~-------------------I~ 443 (609)
+... ......++++|++.++++++.++. |.
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 4310 011125788898889999887763 99
Q ss_pred EEeCCCCCCCCCccceEeecC--Cc-------ccEEEEEEcCCCC--cEEEEEeccCCCeEEEEECCCCceeEEEcCCC-
Q psy4876 444 IWSGVPGQHTFSTQPIHSLSR--HQ-------AAVKAIAWCPWSP--NVLASGGGTADRHIYFWNVSSGACLDSIDTKS- 511 (609)
Q Consensus 444 iwd~~~~~~~~~~~~~~~~~~--h~-------~~V~~l~~sp~~~--~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~- 511 (609)
.||..++ +.+..+.. |. ..+.......+|. .+++.+ +.+|.++++|..+|+.+.......
T Consensus 279 AlD~~TG------~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~--~~~G~l~~lD~~tG~~l~~~~~~~~ 350 (689)
T 1yiq_A 279 AVNADTG------EYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQA--PKNGFFYVIDRATGELLSAKGIVPQ 350 (689)
T ss_dssp EEETTTC------CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC--CTTSEEEEEETTTCCEEEEEESSCC
T ss_pred EEEccCC------ceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEE--CCCCeEEEEECCCCCEecccccccc
Confidence 9999999 44444432 21 1121122222342 245554 589999999999999875432211
Q ss_pred ---------------------------------------CeEEEEEcCCCCeEEEEEec---------------------
Q psy4876 512 ---------------------------------------QVCALLWNSDYKELVSAHGF--------------------- 531 (609)
Q Consensus 512 ---------------------------------------~v~sl~~s~~g~~l~~~sG~--------------------- 531 (609)
....++|+|+...+++....
T Consensus 351 ~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (689)
T 1yiq_A 351 SWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMY 430 (689)
T ss_dssp SSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSC
T ss_pred ccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccccc
Confidence 11236888888888775321
Q ss_pred ----------------------CCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 532 ----------------------AQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 532 ----------------------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
.+|.|..||+.+++.+..+..+. .+....+...+.+|+.++.||.|+.||..+++..
T Consensus 431 ~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 431 QLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp CCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 03789999999999988876553 3344466678889999999999999999999876
Q ss_pred hhhh
Q psy4876 590 KKKE 593 (609)
Q Consensus 590 ~k~~ 593 (609)
-+.+
T Consensus 510 w~~~ 513 (689)
T 1yiq_A 510 WEQP 513 (689)
T ss_dssp EEEE
T ss_pred eeee
Confidence 5443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-08 Score=101.93 Aligned_cols=219 Identities=10% Similarity=-0.014 Sum_probs=150.6
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec-CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN-TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
+..|.+++.++.|..+|.. ++.......+...+.++..+ ...|+.++.++.|..+|.. + .....+......+.++.
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g-~~~~~~~~~~~~~~~~~ 183 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-G-TEKWRFKTNDAITSAAS 183 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-S-CEEEEEECSSCCCSCCE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-C-CEeEEEecCCCceeeeE
Confidence 5567788888999999998 77776666555556666664 5567778888999999998 4 35555555556677788
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeE
Q psy4876 426 WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLD 505 (609)
Q Consensus 426 ~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~ 505 (609)
+.++|.+++. + +.|..|| .++ ..+..+......+.++...+++ .+++.. .++.|..+|. +++.+.
T Consensus 184 ~d~~g~l~v~-t--~~l~~~d-~~g------~~~~~~~~~~~~~~~~~~~~~g-~l~v~t---~~~gl~~~~~-~g~~~~ 248 (330)
T 3hxj_A 184 IGKDGTIYFG-S--DKVYAIN-PDG------TEKWNFYAGYWTVTRPAISEDG-TIYVTS---LDGHLYAINP-DGTEKW 248 (330)
T ss_dssp ECTTCCEEEE-S--SSEEEEC-TTS------CEEEEECCSSCCCSCCEECTTS-CEEEEE---TTTEEEEECT-TSCEEE
T ss_pred EcCCCEEEEE-e--CEEEEEC-CCC------cEEEEEccCCcceeceEECCCC-eEEEEc---CCCeEEEECC-CCCEeE
Confidence 8888875544 4 7899999 555 4444554455667788888876 455532 5788888874 566666
Q ss_pred EEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 506 SIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 506 ~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
.+.... .+..+...+++.. .+ +..++.|..+|. +++.+..+......+.++....+|. |..++.+|.+++....
T Consensus 249 ~~~~~~~~~~~~~~~~~g~l-~v--~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 249 RFKTGKRIESSPVIGNTDTI-YF--GSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp EEECSSCCCSCCEECTTSCE-EE--ECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC-
T ss_pred EeeCCCCccccceEcCCCeE-EE--ecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecc
Confidence 665443 3445566656654 44 336789999995 7777777765566677788878886 5668899999998876
Q ss_pred CCcc
Q psy4876 585 EKVK 588 (609)
Q Consensus 585 ~~~~ 588 (609)
..++
T Consensus 324 ~~~~ 327 (330)
T 3hxj_A 324 EHHH 327 (330)
T ss_dssp ----
T ss_pred cccc
Confidence 5443
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=5.9e-07 Score=88.88 Aligned_cols=219 Identities=10% Similarity=0.032 Sum_probs=146.3
Q ss_pred CCeEEEEEccCCCEEEEEe-CCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CC-EEEEEecCCeEEEEEcCCCCeeE
Q psy4876 336 ENVCSVAWIQEGYMLGVGT-SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TY-ILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs-~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~-~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
..+.+++|++++..|+.+. .++.|.+++.........+.........++++ +. ++++-...+.|.++++.... ..
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~ 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RR 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EE
Confidence 4578999999776665554 56899999997655444443333567788884 34 44455567889999987543 22
Q ss_pred EEEccCCCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCcEEEEEec
Q psy4876 412 ALLQNHTQEVCGLKWSPDGRYLASGGN---DNLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~lasgs~---Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~llasggG 487 (609)
............++++|++..|..+.. .+.|..+++... ....+ .........+++++++..++++..
T Consensus 115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-------~~~~~~~~~~~~P~gia~d~~~~~lyv~d~- 186 (267)
T 1npe_A 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-------NRRILAQDNLGLPNGLTFDAFSSQLCWVDA- 186 (267)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-------CCEEEECTTCSCEEEEEEETTTTEEEEEET-
T ss_pred EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-------CcEEEEECCCCCCcEEEEcCCCCEEEEEEC-
Confidence 222222256789999997666655554 368888888643 11122 123345789999998878877763
Q ss_pred cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCC-CCEEEEEEeCCC
Q psy4876 488 TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHS-ARVLNLAMSPDE 566 (609)
Q Consensus 488 s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~spdg 566 (609)
..+.|.++|+........+........++.. +..++++ ....+.|.++|..+++.+..+.... .....+++.|++
T Consensus 187 -~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva-~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 187 -GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYT-DWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp -TTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEE-ETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred -CCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEE-ECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 6789999999865444444444455677654 5566665 3467899999999999888885432 347788888886
Q ss_pred C
Q psy4876 567 T 567 (609)
Q Consensus 567 ~ 567 (609)
.
T Consensus 263 ~ 263 (267)
T 1npe_A 263 C 263 (267)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=6.9e-09 Score=108.20 Aligned_cols=251 Identities=11% Similarity=-0.056 Sum_probs=161.9
Q ss_pred EEEecCCC-eEEEE-----------cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-C-----C
Q psy4876 274 LIDWSHFN-VLAVA-----------LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-G-----N 335 (609)
Q Consensus 274 ~l~wsp~~-lla~s-----------~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h-----~ 335 (609)
.+.++||+ .+.++ .++.|.+||..+ ++......+. . .
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-------------------------~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-------------------------FLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-------------------------CCEEEEEEETTSCSCCBS
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-------------------------CCEEEEEECCCccccccC
Confidence 47888986 33333 268899999998 4443333331 0 1
Q ss_pred CCeEEEEEccCCCEEEEEeC--CCeEEE--EeCCCCeeEEEecCCCCceEEEEec-CCEEEEEecCCeEEEEEcCC----
Q psy4876 336 ENVCSVAWIQEGYMLGVGTS--LGTVQL--WDVSAKKKCRTMDGHDVRVGALAWN-TYILSSGSRCGNIVHHDVRS---- 406 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~--dg~I~i--wd~~~~~~~~~l~~h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~---- 406 (609)
.....++++|||++|+++.. +..|.+ +|+.+ +..+..... ..+..+ ...+++.+.||.+.+.|+.+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~ 198 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC--FHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC--CCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc--eEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence 34568999999999998874 457888 99877 444432111 112233 45666777899998889876
Q ss_pred CCeeEEE----EccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-------C---cccEEEE
Q psy4876 407 RDHKVAL----LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-------H---QAAVKAI 472 (609)
Q Consensus 407 ~~~~~~~----~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-------h---~~~V~~l 472 (609)
..+.... +.-...+. . ++++..++..+. +.|.+.|+..... ..+..+.. + ......+
T Consensus 199 ~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~----~v~~~~~~~~~~~~~~~~~p~g~~~v 269 (368)
T 1mda_H 199 AGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGA----TMKAAIDGNESGRKADNFRSAGFQMV 269 (368)
T ss_dssp CEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCC----EEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred CCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcc----eEEEEEEeccccccccccccCcceee
Confidence 2222110 11112233 3 666666666667 9999999875421 11111110 0 1111226
Q ss_pred EEcCCCCcEEEEEecc-C-----CCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce
Q psy4876 473 AWCPWSPNVLASGGGT-A-----DRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK 546 (609)
Q Consensus 473 ~~sp~~~~llasggGs-~-----Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~ 546 (609)
+++|++..++++.... . ++.+.++|+.+++.+..+..+.....++|+++|+.++++.+..++.|.++|..+++.
T Consensus 270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred EEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 8999998888764200 1 235669999999999998877789999999999987776554589999999999999
Q ss_pred EEEEeCCCCCEEEEEEeC
Q psy4876 547 VAELHGHSARVLNLAMSP 564 (609)
Q Consensus 547 ~~~l~~h~~~V~~l~~sp 564 (609)
+..+..... ...+++.+
T Consensus 350 v~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 350 QSSVELDKG-PESLSVQN 366 (368)
T ss_dssp EEECCCCSC-CCEEECCC
T ss_pred EEEEECCCC-CCEEEeec
Confidence 998875543 35666543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=8.6e-09 Score=107.45 Aligned_cols=260 Identities=8% Similarity=-0.047 Sum_probs=167.0
Q ss_pred eEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEe----------CCCeE
Q psy4876 290 SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGT----------SLGTV 359 (609)
Q Consensus 290 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs----------~dg~I 359 (609)
.|.+.|..+ ++....... ...+ .+.++|||++++++. .++.|
T Consensus 47 ~vsvID~~t-------------------------~~v~~~i~v-G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~V 98 (368)
T 1mda_H 47 ENWVSCAGC-------------------------GVTLGHSLG-AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYV 98 (368)
T ss_dssp EEEEEETTT-------------------------TEEEEEEEE-CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEE
T ss_pred eEEEEECCC-------------------------CeEEEEEeC-CCCC--ceEECCCCCEEEEEcccccccccCCCCCEE
Confidence 788999988 554433333 3344 799999999999886 36789
Q ss_pred EEEeCCCCeeEEEecCC-------CCceEEEEe--cCCEEEEEec--CCeEEE--EEcCCCCeeEEEEccCCCCeEEEEE
Q psy4876 360 QLWDVSAKKKCRTMDGH-------DVRVGALAW--NTYILSSGSR--CGNIVH--HDVRSRDHKVALLQNHTQEVCGLKW 426 (609)
Q Consensus 360 ~iwd~~~~~~~~~l~~h-------~~~V~~l~~--~~~~L~sgs~--dg~I~i--wd~~~~~~~~~~~~~h~~~V~~l~~ 426 (609)
.+||+.+++.+.++..+ ......+++ ++++++++.. +..|.+ +|..+ +..+.. .+. +.+
T Consensus 99 sviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~~---~~~ 170 (368)
T 1mda_H 99 EVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKS-ASC---FHI 170 (368)
T ss_dssp EEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEEC-SSC---CCC
T ss_pred EEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEEC-CCc---eEE
Confidence 99999999999988643 122345566 6788887764 456888 88865 233321 111 123
Q ss_pred ccCC-CEEEEEeCCCcEEEEeCCC-----CCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 427 SPDG-RYLASGGNDNLLNIWSGVP-----GQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 427 spdg-~~lasgs~Dg~I~iwd~~~-----~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
.|+| ..+++.+.||.+.+.|+.. ++...... ..+.....+. . .+++..++.+. . +.+.+.|+.+
T Consensus 171 ~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t--~~i~vg~~P~---~-~~~~~~~~~vs---~-~~V~viD~~~ 240 (368)
T 1mda_H 171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT--GAQNCSSQAA---Q-ANYPGMLVWAV---A-SSILQGDIPA 240 (368)
T ss_dssp EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC--TTSCBCSCCE---E-ETTTTEEEECB---S-SCCEEEECCS
T ss_pred ccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee--eeeeCCCCcc---c-cccCCEEEEEc---C-CEEEEEECCC
Confidence 3544 3455566788888888876 31100000 0111122333 3 55565666553 5 8999999875
Q ss_pred Cc--eeEEEcCC-----------CCeEEEEEcCCCCeEEEEEe-c-C-----CCeEEEEECCCCceEEEEeCCCCCEEEE
Q psy4876 501 GA--CLDSIDTK-----------SQVCALLWNSDYKELVSAHG-F-A-----QNQLIIWKYPSLVKVAELHGHSARVLNL 560 (609)
Q Consensus 501 ~~--~~~~~~~~-----------~~v~sl~~s~~g~~l~~~sG-~-~-----dg~I~Iwd~~~~~~~~~l~~h~~~V~~l 560 (609)
+. .+..+... .....++++++++.++++.. . . .+.+.++|..+.+.+..+.... ...+|
T Consensus 241 ~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi 319 (368)
T 1mda_H 241 AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAI 319 (368)
T ss_dssp SCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEE
T ss_pred CcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceE
Confidence 43 22222211 11122789999999988643 2 1 2356699999999988876443 58899
Q ss_pred EEeCCCC-EEEEEE-CCCCEEEEEcCCCccchhhhhhc
Q psy4876 561 AMSPDET-TVLSAG-ADETLRLWKIFEKVKSKKKEIKN 596 (609)
Q Consensus 561 ~~spdg~-~L~s~s-~Dg~I~iWdl~~~~~~~k~~~~~ 596 (609)
+|+|||+ .+++.. .++.|.++|+.+.+..+......
T Consensus 320 ~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~ 357 (368)
T 1mda_H 320 IAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred EECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC
Confidence 9999998 556666 59999999999988776554433
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.4e-08 Score=110.31 Aligned_cols=213 Identities=14% Similarity=0.139 Sum_probs=136.9
Q ss_pred CCeEEEEeCCCCeeEEEecCC--C-----------------------------CceEEEEec--CCEEEEEecCCe----
Q psy4876 356 LGTVQLWDVSAKKKCRTMDGH--D-----------------------------VRVGALAWN--TYILSSGSRCGN---- 398 (609)
Q Consensus 356 dg~I~iwd~~~~~~~~~l~~h--~-----------------------------~~V~~l~~~--~~~L~sgs~dg~---- 398 (609)
+|.|..||..+|+.+-.+... . .....++++ ..+++.+..++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~ 261 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP 261 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence 689999999999988766421 0 001135553 578888887764
Q ss_pred ---------------EEEEEcCCCCeeEEEEcc--CC-------CCeEEEEEccCCC---EEEEEeCCCcEEEEeCCCCC
Q psy4876 399 ---------------IVHHDVRSRDHKVALLQN--HT-------QEVCGLKWSPDGR---YLASGGNDNLLNIWSGVPGQ 451 (609)
Q Consensus 399 ---------------I~iwd~~~~~~~~~~~~~--h~-------~~V~~l~~spdg~---~lasgs~Dg~I~iwd~~~~~ 451 (609)
|..+|..++. .+..++. |. ..+.......+|+ .++.++.+|.|+++|..+++
T Consensus 262 ~~~~~~~gd~~y~~~v~AlD~~TG~-~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 262 KWRSQAKGDNLFLSSIVAVNADTGE-YVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp HHHHTTCSCCTTTTEEEEEETTTCC-EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCCCCCCCCceeeeeEEEEEccCCc-eeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 9999999985 5555543 21 1222223333665 78899999999999999984
Q ss_pred CCCCccc-----eEe-----------------ecCCcc-----------cEEEEEEcCCCCcEEEEEe------------
Q psy4876 452 HTFSTQP-----IHS-----------------LSRHQA-----------AVKAIAWCPWSPNVLASGG------------ 486 (609)
Q Consensus 452 ~~~~~~~-----~~~-----------------~~~h~~-----------~V~~l~~sp~~~~llasgg------------ 486 (609)
....... ... +..... .-..++++|+...+++...
T Consensus 341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 420 (689)
T 1yiq_A 341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA 420 (689)
T ss_dssp EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence 3210000 000 000000 0112678887654443211
Q ss_pred ------------c------------------cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeE
Q psy4876 487 ------------G------------------TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQL 536 (609)
Q Consensus 487 ------------G------------------s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I 536 (609)
| ..++.|+.||+.+|+.+..+..+..+..-.+...+..+++ |..|+.|
T Consensus 421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~--gt~dg~l 498 (689)
T 1yiq_A 421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFE--GSADGRV 498 (689)
T ss_dssp CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEE
T ss_pred ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEE--ECCCCcE
Confidence 0 0148899999999999988877665555566777888887 5589999
Q ss_pred EEEECCCCceEEEEeCCCCC-EEEEEEeCCCCEEEE
Q psy4876 537 IIWKYPSLVKVAELHGHSAR-VLNLAMSPDETTVLS 571 (609)
Q Consensus 537 ~Iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~L~s 571 (609)
+.||..+++.+..+....+. ..-+.|..+|+.+++
T Consensus 499 ~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 499 IAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 99999999999988754322 244677788874443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.7e-07 Score=97.19 Aligned_cols=218 Identities=17% Similarity=0.138 Sum_probs=145.4
Q ss_pred cCCCEEEE-EeCCCeEEEEeCCCC----eeEEEecC-------CCCceEEEEe--cCCEEEEEecC------CeEEEEEc
Q psy4876 345 QEGYMLGV-GTSLGTVQLWDVSAK----KKCRTMDG-------HDVRVGALAW--NTYILSSGSRC------GNIVHHDV 404 (609)
Q Consensus 345 pdg~~Las-gs~dg~I~iwd~~~~----~~~~~l~~-------h~~~V~~l~~--~~~~L~sgs~d------g~I~iwd~ 404 (609)
+++++|++ |..++.|.|+|+.+. +..+++.. ....-..+.. ++ +++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77877776 455678999999765 66666630 1112222333 45 66666555 78999999
Q ss_pred CCCCeeEEEEccCC---CCeEEEEEccCCCEEEEEe-------------------CCCcEEEEeCCCCCCCCCccceEee
Q psy4876 405 RSRDHKVALLQNHT---QEVCGLKWSPDGRYLASGG-------------------NDNLLNIWSGVPGQHTFSTQPIHSL 462 (609)
Q Consensus 405 ~~~~~~~~~~~~h~---~~V~~l~~spdg~~lasgs-------------------~Dg~I~iwd~~~~~~~~~~~~~~~~ 462 (609)
.+.+ .+..+.... ..-..+.|+|+++.+++.. .+..|.+||+.++ +.+.++
T Consensus 172 ~T~~-v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~------k~~~tI 244 (462)
T 2ece_A 172 YSFE-PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR------KRIHSL 244 (462)
T ss_dssp TTCC-EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT------EEEEEE
T ss_pred CCCe-EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC------cEeeEE
Confidence 9874 666665221 1233578899999888874 3689999999976 555555
Q ss_pred cCC--cccEEEEEE--cCCCCcEEEEEecc-----CCCeEEEEECCCCce--eEEE--cC-----------------CCC
Q psy4876 463 SRH--QAAVKAIAW--CPWSPNVLASGGGT-----ADRHIYFWNVSSGAC--LDSI--DT-----------------KSQ 512 (609)
Q Consensus 463 ~~h--~~~V~~l~~--sp~~~~llasggGs-----~Dg~I~iwd~~t~~~--~~~~--~~-----------------~~~ 512 (609)
... ......+.| +|+++..++++ . .+++|.+|....++. ...+ .. ...
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~--e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINM--VVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEE--EEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEE--eeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence 442 123445655 99998777765 3 567888776654431 1111 11 245
Q ss_pred eEEEEEcCCCCeEEEEEecCCCeEEEEECCC---CceEEEEeCCC--------------CCEEEEEEeCCCCEEEEEE
Q psy4876 513 VCALLWNSDYKELVSAHGFAQNQLIIWKYPS---LVKVAELHGHS--------------ARVLNLAMSPDETTVLSAG 573 (609)
Q Consensus 513 v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~---~~~~~~l~~h~--------------~~V~~l~~spdg~~L~s~s 573 (609)
...|.+++||++|+++.. ..+.|.+||+.. .+.+..+.... +.-..++++|||++|+++.
T Consensus 323 pa~I~lS~DGrfLYVSnr-g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLW-GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSCEEEEEET-TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eeEEEECCCCCEEEEEeC-CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 788999999999998754 578999999852 34555553220 1357899999999999988
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=7.4e-08 Score=108.93 Aligned_cols=271 Identities=11% Similarity=0.056 Sum_probs=173.5
Q ss_pred CCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCC----CCeEEEEEccCCCEEEEEeC
Q psy4876 280 FNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGN----ENVCSVAWIQEGYMLGVGTS 355 (609)
Q Consensus 280 ~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~----~~V~~v~~spdg~~Lasgs~ 355 (609)
+.+++++.|+.|+.+|..+ ++..-....... ..+.+.-.. .+..+++++.
T Consensus 129 ~~v~v~~~dg~l~alD~~t-------------------------G~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~ 182 (677)
T 1kb0_A 129 GKVYVGAWDGRLIALDAAT-------------------------GKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNG 182 (677)
T ss_dssp TEEEEECTTSEEEEEETTT-------------------------CCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCB
T ss_pred CEEEEEcCCCEEEEEECCC-------------------------CCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEec
Confidence 4466777899999999988 443222222100 111111111 2345555553
Q ss_pred ------CCeEEEEeCCCCeeEEEecCCCCc--------------------------------eEEEEe--cCCEEEEEec
Q psy4876 356 ------LGTVQLWDVSAKKKCRTMDGHDVR--------------------------------VGALAW--NTYILSSGSR 395 (609)
Q Consensus 356 ------dg~I~iwd~~~~~~~~~l~~h~~~--------------------------------V~~l~~--~~~~L~sgs~ 395 (609)
+|.|+.||..+|+.+..+...... ...+++ ++..++.+..
T Consensus 183 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~ 262 (677)
T 1kb0_A 183 GAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTG 262 (677)
T ss_dssp CTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred ccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECC
Confidence 689999999999988776542211 123455 4577887776
Q ss_pred CC-------------------eEEEEEcCCCCeeEEEEcc--CC-------CCeEEEEEccCC---CEEEEEeCCCcEEE
Q psy4876 396 CG-------------------NIVHHDVRSRDHKVALLQN--HT-------QEVCGLKWSPDG---RYLASGGNDNLLNI 444 (609)
Q Consensus 396 dg-------------------~I~iwd~~~~~~~~~~~~~--h~-------~~V~~l~~spdg---~~lasgs~Dg~I~i 444 (609)
++ .|..+|..++. .+..++. |. ....-+....+| ..+++++.+|.|++
T Consensus 263 ~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~-~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~ 341 (677)
T 1kb0_A 263 NGSPWSHKVRSPKGGDNLYLASIVALDPDTGK-YKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFV 341 (677)
T ss_dssp CEESSCHHHHSTTCCCCTTTTEEEEECTTTCC-EEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEE
T ss_pred CCccccCCCCCccCCCCeeeEEEEEEECCCCC-EEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEE
Confidence 64 59999999985 5555442 21 122233444477 68999999999999
Q ss_pred EeCCCCCCCCCccceEeecCC-----------cccE------------------------EEEEEcCCCCcEEEEEe---
Q psy4876 445 WSGVPGQHTFSTQPIHSLSRH-----------QAAV------------------------KAIAWCPWSPNVLASGG--- 486 (609)
Q Consensus 445 wd~~~~~~~~~~~~~~~~~~h-----------~~~V------------------------~~l~~sp~~~~llasgg--- 486 (609)
+|..+++ .+..+... ..++ ..++++|++..+++...
T Consensus 342 lD~~tG~------~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~ 415 (677)
T 1kb0_A 342 LDRTNGK------FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVP 415 (677)
T ss_dssp EETTTCC------EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECC
T ss_pred EECCCCC------EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcc
Confidence 9999984 33322211 0011 14678887765554321
Q ss_pred -----------c--------------------------cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEE
Q psy4876 487 -----------G--------------------------TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAH 529 (609)
Q Consensus 487 -----------G--------------------------s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~s 529 (609)
| ...+.|..||+.+++.+..+.....+....+...+..+++
T Consensus 416 ~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~-- 493 (677)
T 1kb0_A 416 VNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQ-- 493 (677)
T ss_dssp CEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--
T ss_pred eeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEE--
Confidence 0 0127899999999999988877666666667778888887
Q ss_pred ecCCCeEEEEECCCCceEEEEeCCC-CCEEEEEEeCCCCEEEEE-EC----------------CCCEEEEEcCC
Q psy4876 530 GFAQNQLIIWKYPSLVKVAELHGHS-ARVLNLAMSPDETTVLSA-GA----------------DETLRLWKIFE 585 (609)
Q Consensus 530 G~~dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~L~s~-s~----------------Dg~I~iWdl~~ 585 (609)
+..++.+++||..+++.+..+.... ....-+.|..+|+.++.. +. .+.+.+|.+..
T Consensus 494 g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 494 GTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred ECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 4589999999999999999886433 233445667888755443 22 36888888874
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.7e-10 Score=119.38 Aligned_cols=201 Identities=12% Similarity=0.020 Sum_probs=112.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCC-CeE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ-EVC 422 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-~V~ 422 (609)
++..|++++.||.|..||..+|+.+..+.. ..+.+..+ ++.++++++.||.|+.||..+++ .+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~-~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE-GLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----C-CSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCc-eeeeeeccCccccc
Confidence 567899999999999999999999888876 33333222 56677778899999999998764 3444432211 110
Q ss_pred -EEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 423 -GLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 423 -~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
+..+. ++..+++|+.|+.|+.||..++ +.+..+..+. ...++|++..+++ + +.|+.|+.||..+|
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG------~~~w~~~~~~----~~~~~p~~~~v~~-~--~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTG------EKQQTLSSAF----ADSLSPSTSLLYL-G--RTEYTITMYDTKTR 150 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC--------------------------------EEE-E--EEEEEEECCCSSSS
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCC------cEEEEecCCC----cccccccCCEEEE-E--ecCCEEEEEECCCC
Confidence 01111 3456788888999999999998 4444444332 2345666654444 4 36899999999999
Q ss_pred ceeEEEcCCCCeEEEEEcCCC---CeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEE-EEEeCCCC
Q psy4876 502 ACLDSIDTKSQVCALLWNSDY---KELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLN-LAMSPDET 567 (609)
Q Consensus 502 ~~~~~~~~~~~v~sl~~s~~g---~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~-l~~spdg~ 567 (609)
+.+..+.... ....++..+. ..+++ +..+|.|+.||..+++.+..+.. ..++.. ..++++|.
T Consensus 151 ~~~W~~~~~~-~~~~~~~~~~~~~~~v~~--~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 151 ELRWNATYFD-YAASLPEDDVDYKMSHFV--SNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGL 216 (369)
T ss_dssp SCCCEEEEEE-ECCBCCCCCTTCCCCEEE--EETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSC
T ss_pred CEEEeEeccc-ccCccccCCccccceEEE--ECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCce
Confidence 8776654221 1222333332 45555 34799999999999998887763 344433 34455664
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.6e-07 Score=89.02 Aligned_cols=203 Identities=13% Similarity=0.056 Sum_probs=142.3
Q ss_pred eeeeeeecCCC--CeEEEEEccCCCEEEEEeC---CCeEEEEeCCCCeeEEEecCCC-CceEEEEecCCEEEEE-ecCCe
Q psy4876 326 IDHLMDLEGNE--NVCSVAWIQEGYMLGVGTS---LGTVQLWDVSAKKKCRTMDGHD-VRVGALAWNTYILSSG-SRCGN 398 (609)
Q Consensus 326 ~~~l~~~~h~~--~V~~v~~spdg~~Lasgs~---dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~~~~~L~sg-s~dg~ 398 (609)
.+.+.++.|.. ....++|++++ .|++++. ++.|.++|+.+++.+..+.-.. .....+++++..|+.+ -.++.
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~ 87 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNI 87 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSE
T ss_pred ceEEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCE
Confidence 34555666553 46899999986 5555542 5799999999999988875322 2334577766555544 46789
Q ss_pred EEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCc-----ccEEEEE
Q psy4876 399 IVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQ-----AAVKAIA 473 (609)
Q Consensus 399 I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-----~~V~~l~ 473 (609)
+.++|..+. ..+..+...... ...+++||+.++++..++.|.++|..+. +.+..+.... ..+..+.
T Consensus 88 v~viD~~t~-~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~------~v~~~I~Vg~~~~p~~~~nele 158 (266)
T 2iwa_A 88 GFIYDRRTL-SNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTF------KLIKKHNVKYNGHRVIRLNELE 158 (266)
T ss_dssp EEEEETTTT-EEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTC------CEEEEEECEETTEECCCEEEEE
T ss_pred EEEEECCCC-cEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCC------cEEEEEEECCCCcccccceeEE
Confidence 999999987 456666422122 2345668887777777899999999887 4444443221 2367888
Q ss_pred EcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC--------------CCeEEEEEcCCCCeEEEEEecCCCeEEEE
Q psy4876 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK--------------SQVCALLWNSDYKELVSAHGFAQNQLIIW 539 (609)
Q Consensus 474 ~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~--------------~~v~sl~~s~~g~~l~~~sG~~dg~I~Iw 539 (609)
|. ++ .+++.. ..++.|.+.|..+++.+..+... .....|+|+++++.++++. ...+.|.+.
T Consensus 159 ~~-dg-~lyvn~--~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg-k~~~~v~~i 233 (266)
T 2iwa_A 159 YI-NG-EVWANI--WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG-KLWPKLFEI 233 (266)
T ss_dssp EE-TT-EEEEEE--TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE-TTCSEEEEE
T ss_pred EE-CC-EEEEec--CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC-CCCCeEEEE
Confidence 88 55 566665 36789999999999999988753 3568999999999888874 467888888
Q ss_pred ECCC
Q psy4876 540 KYPS 543 (609)
Q Consensus 540 d~~~ 543 (609)
++..
T Consensus 234 ~l~~ 237 (266)
T 2iwa_A 234 KLHL 237 (266)
T ss_dssp EEEE
T ss_pred EEec
Confidence 7643
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-07 Score=96.48 Aligned_cols=190 Identities=13% Similarity=0.066 Sum_probs=123.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeC-----CCeEEEEeCCCCeeEEEecCC------CCceEEEEec--C-CEEEEEe---cC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTS-----LGTVQLWDVSAKKKCRTMDGH------DVRVGALAWN--T-YILSSGS---RC 396 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~-----dg~I~iwd~~~~~~~~~l~~h------~~~V~~l~~~--~-~~L~sgs---~d 396 (609)
+-..+.+|+++++|+++++-.. ++.|.+||+.+++.+..+... ...+..++++ + ..+++.. .+
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence 4568999999999876665543 578999999999877766532 2356788885 3 3445544 67
Q ss_pred CeEEEEEcCCCCeeEEEEccCC-----------------------------CCeEEEEEccCCCEEEEEeCCC-cEEEEe
Q psy4876 397 GNIVHHDVRSRDHKVALLQNHT-----------------------------QEVCGLKWSPDGRYLASGGNDN-LLNIWS 446 (609)
Q Consensus 397 g~I~iwd~~~~~~~~~~~~~h~-----------------------------~~V~~l~~spdg~~lasgs~Dg-~I~iwd 446 (609)
+.|.+||+.++. ....+.+|. ..+.+|+|+|||+.|+++..++ .|+.++
T Consensus 145 ~~i~v~d~~~g~-~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 145 AALIRVDLQTGL-AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp CEEEEEETTTCC-EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred CeEEEEECCCCC-EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 899999998653 334333321 2368899999999888887765 555555
Q ss_pred CC---CCCCCCCccceE--eecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC--CCCeEEEEEc
Q psy4876 447 GV---PGQHTFSTQPIH--SLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT--KSQVCALLWN 519 (609)
Q Consensus 447 ~~---~~~~~~~~~~~~--~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~--~~~v~sl~~s 519 (609)
.. .+.. ...+... ...++......++++++| .++++. ..++.|.+||..+++....... ...+.+++|.
T Consensus 224 ~~~~~~~~~-~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~--~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~ 299 (343)
T 2qe8_A 224 SADLSNLQL-TDAELGSKIERYSEKPICDGISIDKDH-NIYVGD--LAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG 299 (343)
T ss_dssp HHHHTCTTC-CHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEE--GGGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC
T ss_pred HHHhcCCCC-ChhhhhcceEecccCCCCceEEECCCC-CEEEEc--cCCCeEEEEECCCCCEEEEEECCceecCCeeEEC
Confidence 32 1100 0000000 111233345678999987 566665 3689999999866764433332 2468899999
Q ss_pred CCCCeEEEE
Q psy4876 520 SDYKELVSA 528 (609)
Q Consensus 520 ~~g~~l~~~ 528 (609)
+++.++++.
T Consensus 300 ~~g~l~v~~ 308 (343)
T 2qe8_A 300 SDGYLYFDC 308 (343)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEe
Confidence 998776664
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.7e-09 Score=113.28 Aligned_cols=254 Identities=14% Similarity=0.037 Sum_probs=133.5
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQL 361 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~i 361 (609)
+++++.|+.|+.||..+ ++..- ++.. +.+.+..+..++..+++++.||.|..
T Consensus 12 v~~gs~dg~v~a~d~~t-------------------------G~~~W--~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a 63 (369)
T 2hz6_A 12 LFVSTLDGSLHAVSKRT-------------------------GSIKW--TLKE-DPVLQVPTHVEEPAFLPDPNDGSLYT 63 (369)
T ss_dssp EEEEETTSEEEEEETTT-------------------------CCEEE--EEEC-CCSCCCC-----CCEEECTTTCCEEE
T ss_pred EEEEcCCCEEEEEECCC-------------------------CCEEE--EecC-CCceecceEcCCCEEEEeCCCCEEEE
Confidence 66788899999999988 55433 2222 44555556667878888889999999
Q ss_pred EeCCCCeeEEEecCCCCc-e-EEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeC
Q psy4876 362 WDVSAKKKCRTMDGHDVR-V-GALAW-NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGN 438 (609)
Q Consensus 362 wd~~~~~~~~~l~~h~~~-V-~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~ 438 (609)
||..+++.+..+..+... + .+... .+..+++++.++.|+.||..++. .+..+..+. ...++|++..+++++.
T Consensus 64 ~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~-~~w~~~~~~----~~~~~p~~~~v~~~~~ 138 (369)
T 2hz6_A 64 LGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGE-KQQTLSSAF----ADSLSPSTSLLYLGRT 138 (369)
T ss_dssp C-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEE
T ss_pred EECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCc-EEEEecCCC----cccccccCCEEEEEec
Confidence 999998877666543211 1 01112 45677888899999999999874 555554443 2345678889999999
Q ss_pred CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC---CcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEE
Q psy4876 439 DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS---PNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCA 515 (609)
Q Consensus 439 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~s 515 (609)
|+.|+.||.++++ .+..+..+. ....++.++. ..+++. +.|+.|+.||..+|+.+..+...+++..
T Consensus 139 dg~v~a~d~~tG~------~~W~~~~~~--~~~~~~~~~~~~~~~v~~~---~~dg~v~a~d~~tG~~~W~~~~~~pv~~ 207 (369)
T 2hz6_A 139 EYTITMYDTKTRE------LRWNATYFD--YAASLPEDDVDYKMSHFVS---NGDGLVVTVDSESGDVLWIQNYASPVVA 207 (369)
T ss_dssp EEEEECCCSSSSS------CCCEEEEEE--ECCBCCCCCTTCCCCEEEE---ETSCEEEEECTTTCCEEEEEECSSCEEE
T ss_pred CCEEEEEECCCCC------EEEeEeccc--ccCccccCCccccceEEEE---CCCCEEEEEECCCCcEEEEecCCCceEE
Confidence 9999999999884 333322111 1222333321 345543 3799999999999999988877766554
Q ss_pred -EEEcCCCCeEEEEEecCCCeEEEEECCCCc----eEEEEeCCCCCEEEEEEeC--CCCEEEEEECCCCEEEEEcC
Q psy4876 516 -LLWNSDYKELVSAHGFAQNQLIIWKYPSLV----KVAELHGHSARVLNLAMSP--DETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 516 -l~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~----~~~~l~~h~~~V~~l~~sp--dg~~L~s~s~Dg~I~iWdl~ 584 (609)
..++.++...+......++.++.+|..+++ .+..+.. .+.+. +| .+..|+.++.||.|+.++..
T Consensus 208 ~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~-~~~~~----sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 208 FYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYPF-PKETE----AKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp EEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCCC-CCHHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred EEEecCCceEeccceeecccceeeeehhcCCcccceeeeecc-Ccccc----ccccccceEEEecccCCEEecCcc
Confidence 344455543211000013344555554444 2222211 01110 22 24467777888888877765
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.9e-08 Score=99.90 Aligned_cols=254 Identities=14% Similarity=0.091 Sum_probs=163.1
Q ss_pred ecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeC
Q psy4876 277 WSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTS 355 (609)
Q Consensus 277 wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~ 355 (609)
...++ +.+++.++.|+.|| .+ +.......+ ....+.++...++|. |.+++.
T Consensus 27 ~d~~g~l~v~t~~~~l~~~d-~~-------------------------g~~~~~~~~-~~~~~~~~~~~~~g~-l~v~t~ 78 (330)
T 3hxj_A 27 LAKNGTIYLGSSNKNLYAIN-TD-------------------------GSVKWFFKS-GEIIECRPSIGKDGT-IYFGSD 78 (330)
T ss_dssp ECTTSCEECSSTTTTTEEEC-TT-------------------------SCEEESSCG-GGEEEECCEETTTTE-ECCSSC
T ss_pred EccCCeEEEEcCCCEEEEEC-CC-------------------------CcEEEEEec-CCCcccceEEecCCc-EEEecC
Confidence 33344 55566688899999 66 443221111 334456777776665 445555
Q ss_pred CCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEE
Q psy4876 356 LGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLAS 435 (609)
Q Consensus 356 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 435 (609)
+ |..+|. +++.+..+.............+..|..++.++.|..+|.. +. .......+...+.++...++|. +..
T Consensus 79 ~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~-~~~~~~~~~~~~~~~~~~~~g~-l~v 152 (330)
T 3hxj_A 79 K--VYAINP-DGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-GT-EKWRFKTKKAIYATPIVSEDGT-IYV 152 (330)
T ss_dssp E--EEEECC-CGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTT-SC-EEEEEECSSCCCSCCEECTTSC-EEE
T ss_pred c--EEEECC-CCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCC-CC-EEEEEcCCCceeeeeEEcCCCE-EEE
Confidence 4 888886 5554433332222223333347778888889999999988 43 4555555555667777877776 556
Q ss_pred EeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeE
Q psy4876 436 GGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVC 514 (609)
Q Consensus 436 gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~ 514 (609)
++.++.|..||.. + ..+..+......+.++...+++ .+++ + + +.|..|| .+++.+..+... ..+.
T Consensus 153 gt~~~~l~~~d~~-g------~~~~~~~~~~~~~~~~~~d~~g-~l~v-~--t--~~l~~~d-~~g~~~~~~~~~~~~~~ 218 (330)
T 3hxj_A 153 GSNDNYLYAINPD-G------TEKWRFKTNDAITSAASIGKDG-TIYF-G--S--DKVYAIN-PDGTEKWNFYAGYWTVT 218 (330)
T ss_dssp ECTTSEEEEECTT-S------CEEEEEECSSCCCSCCEECTTC-CEEE-E--S--SSEEEEC-TTSCEEEEECCSSCCCS
T ss_pred EcCCCEEEEECCC-C------CEeEEEecCCCceeeeEEcCCC-EEEE-E--e--CEEEEEC-CCCcEEEEEccCCccee
Confidence 7778999999988 6 4444444445556677777766 3444 2 3 8899999 777777666544 4677
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEc
Q psy4876 515 ALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKI 583 (609)
Q Consensus 515 sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl 583 (609)
++...++|...+. ..++.|..++ .++..+..+......+..+.+.+++ .|..++.+|.|..+|.
T Consensus 219 ~~~~~~~g~l~v~---t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 219 RPAISEDGTIYVT---SLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp CCEECTTSCEEEE---ETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred ceEECCCCeEEEE---cCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 8888888765553 2578888887 5666666665554445556666566 4667778888988885
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.83 E-value=5.5e-07 Score=97.99 Aligned_cols=228 Identities=11% Similarity=0.050 Sum_probs=155.2
Q ss_pred cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEE-c-cCCCEEEEEe----------
Q psy4876 287 LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAW-I-QEGYMLGVGT---------- 354 (609)
Q Consensus 287 ~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~-s-pdg~~Lasgs---------- 354 (609)
.++.|.+.|+.+ .++..+.++.....+..+++ + |++.++++++
T Consensus 110 ~~~rVavIdl~t-------------------------~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg 164 (595)
T 1fwx_A 110 ANTRVARVRCDV-------------------------MKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDG 164 (595)
T ss_dssp TTTEEEEEETTT-------------------------TEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred CCCEEEEEECCC-------------------------ceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCC
Confidence 356799999988 66666667765566889998 5 9999999885
Q ss_pred --------CCCeEEEEeCCCCeeEEEecC-CCCceEEEEecCCEEEEEecCC----------------------------
Q psy4876 355 --------SLGTVQLWDVSAKKKCRTMDG-HDVRVGALAWNTYILSSGSRCG---------------------------- 397 (609)
Q Consensus 355 --------~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~~~~~L~sgs~dg---------------------------- 397 (609)
.++.|.++|.++.+.+.++.- ....-..+..++.++++.+.+.
T Consensus 165 ~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~ 244 (595)
T 1fwx_A 165 TNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA 244 (595)
T ss_dssp SSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred cccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence 245799999999888877663 2222223333677777666442
Q ss_pred ----------eEEEEEcCC--CCeeEEEEccCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCC------CCCCccc
Q psy4876 398 ----------NIVHHDVRS--RDHKVALLQNHTQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVPGQ------HTFSTQP 458 (609)
Q Consensus 398 ----------~I~iwd~~~--~~~~~~~~~~h~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~~~------~~~~~~~ 458 (609)
.|.+.|..+ +...+..+.. .....++.++|||+++++++ .+.+|.++|+.+.. .......
T Consensus 245 v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 245 IAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp HHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred ccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence 366777765 3211333322 23456799999999877765 57899999998541 0000112
Q ss_pred eEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC----------CceeEEEcCCCCeEEE------EEcCCC
Q psy4876 459 IHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS----------GACLDSIDTKSQVCAL------LWNSDY 522 (609)
Q Consensus 459 ~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t----------~~~~~~~~~~~~v~sl------~~s~~g 522 (609)
+..+.. ......++|+|+| +++++. ..|+.|.+||+.+ .+.+..+..+.+.-.. .+++||
T Consensus 324 ~~~v~v-G~gP~h~aF~~dG-~aY~t~--~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG 399 (595)
T 1fwx_A 324 VAEPEL-GLGPLHTAFDGRG-NAYTSL--FLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN 399 (595)
T ss_dssp EECCBC-CSCEEEEEECTTS-EEEEEE--TTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS
T ss_pred EEEcCC-CCCcceEEECCCC-eEEEEE--ecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC
Confidence 233332 2356889999999 777776 3899999999987 5678888877665333 347999
Q ss_pred CeEEEEEecCCCeE-----------EEEECCCC
Q psy4876 523 KELVSAHGFAQNQL-----------IIWKYPSL 544 (609)
Q Consensus 523 ~~l~~~sG~~dg~I-----------~Iwd~~~~ 544 (609)
++|+++..+....+ .++|+..+
T Consensus 400 k~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 400 DWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp SEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred CEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence 99999987774444 88998543
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-06 Score=88.01 Aligned_cols=236 Identities=9% Similarity=-0.057 Sum_probs=151.1
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecC--------------------CCCceEEEEec--CCEEEEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDG--------------------HDVRVGALAWN--TYILSSG 393 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~--------------------h~~~V~~l~~~--~~~L~sg 393 (609)
....+++|.++|++++++..++.|..||..+++.. .+.. ....+..++++ ...|+.+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 34667899999998888989999999998765432 2210 01356788886 4567777
Q ss_pred ecCCeEEEEEcCCCCeeEEEEcc-----CCCCeEEEEEcc-CCCEEEEEeC-----------------CCcEEEEeCCCC
Q psy4876 394 SRCGNIVHHDVRSRDHKVALLQN-----HTQEVCGLKWSP-DGRYLASGGN-----------------DNLLNIWSGVPG 450 (609)
Q Consensus 394 s~dg~I~iwd~~~~~~~~~~~~~-----h~~~V~~l~~sp-dg~~lasgs~-----------------Dg~I~iwd~~~~ 450 (609)
...+.|..+|..++. +..+.. .......+++.+ +|++.++-.. ++.|..||..++
T Consensus 98 d~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp ETTTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred ECCCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 666668888876532 222211 113478899999 9987666432 367888988765
Q ss_pred CCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc--eeEEE-cCCCCeEEEEEcCCCCeEEE
Q psy4876 451 QHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA--CLDSI-DTKSQVCALLWNSDYKELVS 527 (609)
Q Consensus 451 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~--~~~~~-~~~~~v~sl~~s~~g~~l~~ 527 (609)
+. ..+.........|+|+|++..++++. +..+.|.+|++.... ....+ .... ...+++.++|++.++
T Consensus 176 ------~~-~~~~~~~~~p~gia~~~dg~~lyv~d--~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 176 ------ET-TLLLKELHVPGGAEVSADSSFVLVAE--FLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp ------EE-EEEEEEESCCCEEEECTTSSEEEEEE--GGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEE
T ss_pred ------EE-EEeccCCccCcceEECCCCCEEEEEe--CCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEE
Confidence 21 11111122346799999987677765 356899999987421 11111 2223 788999999986666
Q ss_pred EEe--------cCCCeEEEEECCCCceEEEEeCCC----CCEEEEEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 528 AHG--------FAQNQLIIWKYPSLVKVAELHGHS----ARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 528 ~sG--------~~dg~I~Iwd~~~~~~~~~l~~h~----~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
..+ ...+.|..+|. .++.+..+.... ..+..+++ .++.++++....+.|.++++...
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred ecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 433 11467888886 577777765432 35677776 36666666667788999987643
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-06 Score=85.71 Aligned_cols=194 Identities=9% Similarity=0.036 Sum_probs=134.4
Q ss_pred eEEEEEecCCCeEEEEc----CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccC
Q psy4876 271 YLNLIDWSHFNVLAVAL----GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQE 346 (609)
Q Consensus 271 ~v~~l~wsp~~lla~s~----dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spd 346 (609)
+...|.|++++.|-++. ++.|++.|..+ ++......+........+++.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t-------------------------g~v~~~i~l~~~~fgeGi~~~-- 74 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQT-------------------------GKVENIHKMDDSYFGEGLTLL-- 74 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTT-------------------------CCEEEEEECCTTCCEEEEEEE--
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCC-------------------------CCEEEEEecCCCcceEEEEEe--
Confidence 45779999977444332 47999999998 665554444322223345554
Q ss_pred CCEEEEEe-CCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEcc--CC---CC
Q psy4876 347 GYMLGVGT-SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQN--HT---QE 420 (609)
Q Consensus 347 g~~Lasgs-~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~--h~---~~ 420 (609)
+..|+++. .++.|.++|..+.+.+.++......-..+++++..|+++..++.|.++|..+.. .+..+.- +. ..
T Consensus 75 g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~-v~~~I~Vg~~~~p~~~ 153 (266)
T 2iwa_A 75 NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFK-LIKKHNVKYNGHRVIR 153 (266)
T ss_dssp TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCC-EEEEEECEETTEECCC
T ss_pred CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCc-EEEEEEECCCCccccc
Confidence 55555544 578999999999999998864312335588888777777778999999998864 4444432 11 24
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC-------------cccEEEEEEcCCCCcEEEEEec
Q psy4876 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH-------------QAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-------------~~~V~~l~~sp~~~~llasggG 487 (609)
+..+.|. +|..++....++.|.+.|..++ +.+..+... ......|+|+|+++.+++++.
T Consensus 154 ~nele~~-dg~lyvn~~~~~~V~vID~~tg------~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk- 225 (266)
T 2iwa_A 154 LNELEYI-NGEVWANIWQTDCIARISAKDG------TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK- 225 (266)
T ss_dssp EEEEEEE-TTEEEEEETTSSEEEEEETTTC------CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET-
T ss_pred ceeEEEE-CCEEEEecCCCCeEEEEECCCC------cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC-
Confidence 6788888 7766666556889999999998 445544321 135689999999999999884
Q ss_pred cCCCeEEEEECCCC
Q psy4876 488 TADRHIYFWNVSSG 501 (609)
Q Consensus 488 s~Dg~I~iwd~~t~ 501 (609)
....|.+.++...
T Consensus 226 -~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 226 -LWPKLFEIKLHLV 238 (266)
T ss_dssp -TCSEEEEEEEEEC
T ss_pred -CCCeEEEEEEecc
Confidence 6788888887643
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.4e-06 Score=94.48 Aligned_cols=237 Identities=10% Similarity=-0.004 Sum_probs=151.6
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCC----CceE-EEEecCCEEEEEec------CCeEEEEEcCCCCeeEEEEc
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHD----VRVG-ALAWNTYILSSGSR------CGNIVHHDVRSRDHKVALLQ 415 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~----~~V~-~l~~~~~~L~sgs~------dg~I~iwd~~~~~~~~~~~~ 415 (609)
+..|++++.|+.|..+|..+|+.+-...... ..+. .....+..+++++. +|.|..+|..+++ .+..+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~-~~W~~~ 193 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGE-LKWRAF 193 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCC-EEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCc-EEEEEc
Confidence 5678889999999999999999887655322 0111 11123455666654 7999999999985 454443
Q ss_pred cCCCC--------------------------------------eEEEEEccCCCEEEEEeCC----------------Cc
Q psy4876 416 NHTQE--------------------------------------VCGLKWSPDGRYLASGGND----------------NL 441 (609)
Q Consensus 416 ~h~~~--------------------------------------V~~l~~spdg~~lasgs~D----------------g~ 441 (609)
..... ...+++.++...++.++.+ +.
T Consensus 194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~ 273 (571)
T 2ad6_A 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence 22110 0235667766677666532 25
Q ss_pred EEEEeCCCCCCCCCccceEeecC--C--------cccEEEEEEcCCCC--cEEEEEeccCCCeEEEEECCCCceeEEEcC
Q psy4876 442 LNIWSGVPGQHTFSTQPIHSLSR--H--------QAAVKAIAWCPWSP--NVLASGGGTADRHIYFWNVSSGACLDSIDT 509 (609)
Q Consensus 442 I~iwd~~~~~~~~~~~~~~~~~~--h--------~~~V~~l~~sp~~~--~llasggGs~Dg~I~iwd~~t~~~~~~~~~ 509 (609)
|..+|..++ +.+..++. | ..++. +....+|. .+++.+ +.+|.++++|..+|+.+..+..
T Consensus 274 v~Ald~~tG------~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~--~~~G~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 274 IWGRDLDTG------MAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHI--DRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp EEEEETTTC------CEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEE--CTTSEEEEEETTTCCEEEEEES
T ss_pred EEEEecCCC------cEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEe--CCCcEEEEEECCCCCEEeeecc
Confidence 999999998 34443321 1 12221 22223553 355555 4799999999999998877653
Q ss_pred CC--------------Ce--------------------------EEEEEcCCCCeEEEEEe-------------------
Q psy4876 510 KS--------------QV--------------------------CALLWNSDYKELVSAHG------------------- 530 (609)
Q Consensus 510 ~~--------------~v--------------------------~sl~~s~~g~~l~~~sG------------------- 530 (609)
.. ++ ..++++|+...+++.+.
T Consensus 345 ~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 424 (571)
T 2ad6_A 345 DPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFF 424 (571)
T ss_dssp STTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcc
Confidence 22 11 24578888887776532
Q ss_pred ----------------cCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 531 ----------------FAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 531 ----------------~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
..++.|..||..+++.+..+... ..+....+...+..|+.++.|+.|+.||..+++..-+...
T Consensus 425 ~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 425 VGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp CCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 13578999999999988777532 2233333334567788899999999999999887655443
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=9.1e-06 Score=80.20 Aligned_cols=231 Identities=7% Similarity=-0.013 Sum_probs=144.6
Q ss_pred CEEEEEeCCCeEEEEeCCCCee-----EEEecCCCCceEEEEec--CC-EEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKK-----CRTMDGHDVRVGALAWN--TY-ILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~-----~~~l~~h~~~V~~l~~~--~~-~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
.+|+.+.. +.|+.+++..... ...+......+..++|+ +. ++++-..++.|..++..... ....+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-PTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-cEEEEECCCC
Confidence 45555554 5788888875432 11222223456788885 34 44455567899999997653 2333333335
Q ss_pred CeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEEC
Q psy4876 420 EVCGLKWSPDGRYLASG-GNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 420 ~V~~l~~spdg~~lasg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~ 498 (609)
...++++++++..|+.+ ...+.|.++++... ...............++++|++..++++..+...+.|..+++
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~------~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~ 153 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT------QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM 153 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC------SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCC------CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEec
Confidence 68899999976555544 45678999998743 111112222245689999998777777753222478999988
Q ss_pred CCCceeEEEc--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEE-CC
Q psy4876 499 SSGACLDSID--TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAG-AD 575 (609)
Q Consensus 499 ~t~~~~~~~~--~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s-~D 575 (609)
... ....+. .......+++++++..|+++. ...+.|.+++.........+.+ ......++.. +..|+.+. ..
T Consensus 154 dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d-~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~ 228 (267)
T 1npe_A 154 DGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVD-AGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKT 228 (267)
T ss_dssp TSC-CCEEEECTTCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTT
T ss_pred CCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEE-CCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCC
Confidence 643 333332 234688999999988887764 3678999999875544333333 2334667664 45555555 56
Q ss_pred CCEEEEEcCCCccchh
Q psy4876 576 ETLRLWKIFEKVKSKK 591 (609)
Q Consensus 576 g~I~iWdl~~~~~~~k 591 (609)
+.|.++|..++.....
T Consensus 229 ~~v~~~d~~~g~~~~~ 244 (267)
T 1npe_A 229 NSVIAMDLAISKEMDT 244 (267)
T ss_dssp TEEEEEETTTTEEEEE
T ss_pred CeEEEEeCCCCCceEE
Confidence 8899999887765433
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-05 Score=81.45 Aligned_cols=241 Identities=11% Similarity=0.064 Sum_probs=145.1
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecC-C-eEEE
Q psy4876 326 IDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRC-G-NIVH 401 (609)
Q Consensus 326 ~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~d-g-~I~i 401 (609)
.+.+.++........++|+++|+++++-..++.|..||.... ....+. .......+++ +++++++.... + .|..
T Consensus 22 ~~~~~~~p~~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 22 AKIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred ceEeEeCCCCCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 445555554467889999999987776667899999998753 333333 2356788888 46655554332 2 4777
Q ss_pred EEcCCCCeeEEEEc-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCC--ccceE--eecCCcccEEEEEEcC
Q psy4876 402 HDVRSRDHKVALLQ-NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS--TQPIH--SLSRHQAAVKAIAWCP 476 (609)
Q Consensus 402 wd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~--~~~~~--~~~~h~~~V~~l~~sp 476 (609)
+|..++. ...... ........++..+++..+++-..++.|+++|...+..... ...+. ...........| ++
T Consensus 100 ~d~~~g~-~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~ 176 (306)
T 2p4o_A 100 LVKSDGT-VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR 176 (306)
T ss_dssp EECTTSC-EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred EcCCCCe-EEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence 7766653 221111 2223345666666655455544588999999865310000 00000 001111234555 78
Q ss_pred CCCcEEEEEeccCCCeEEEEECCC-Cce--eEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE--EEe
Q psy4876 477 WSPNVLASGGGTADRHIYFWNVSS-GAC--LDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVA--ELH 551 (609)
Q Consensus 477 ~~~~llasggGs~Dg~I~iwd~~t-~~~--~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~--~l~ 551 (609)
++..++++. +..+.|..||+.. +.. ...+........++++++|+.+++ ....+.|.+++.. ++... .+.
T Consensus 177 dg~~lyv~d--~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va--~~~~~~V~~~~~~-G~~~~~~~~~ 251 (306)
T 2p4o_A 177 FGNFLYVSN--TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA--THIYNSVVRIAPD-RSTTIIAQAE 251 (306)
T ss_dssp ETTEEEEEE--TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE--CBTTCCEEEECTT-CCEEEEECGG
T ss_pred CCCEEEEEe--CCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEE--eCCCCeEEEECCC-CCEEEEeecc
Confidence 887777776 4688999999874 332 122222235677899999976555 3457889999964 55432 233
Q ss_pred CCCCCEEEEEEe---CCCCEEEEEECCC
Q psy4876 552 GHSARVLNLAMS---PDETTVLSAGADE 576 (609)
Q Consensus 552 ~h~~~V~~l~~s---pdg~~L~s~s~Dg 576 (609)
......++++|. ||+..|+.++..+
T Consensus 252 ~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 252 QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred cccCCceEEEEecccCCCCEEEEECCCC
Confidence 333568999998 8988887776543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-06 Score=91.24 Aligned_cols=185 Identities=11% Similarity=0.041 Sum_probs=126.2
Q ss_pred CeEEEEEccCCCEEEEEeCC------CeEEEEeCCCCeeEEEecCCCCc---eEEEEe--cCCEEEEEe-----------
Q psy4876 337 NVCSVAWIQEGYMLGVGTSL------GTVQLWDVSAKKKCRTMDGHDVR---VGALAW--NTYILSSGS----------- 394 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~d------g~I~iwd~~~~~~~~~l~~h~~~---V~~l~~--~~~~L~sgs----------- 394 (609)
.-..+...|+| .++++..+ |.|.++|..+++.+..+...... -..+.| +++.+++..
T Consensus 139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~ 217 (462)
T 2ece_A 139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL 217 (462)
T ss_dssp EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccccc
Confidence 44567888999 66665554 78999999999999988733222 234555 567777774
Q ss_pred --------cCCeEEEEEcCCCCeeEEEEccC--CCCeEEEEE--ccCCCEEEEEe------CCCcEEEEeCCCCCCCCCc
Q psy4876 395 --------RCGNIVHHDVRSRDHKVALLQNH--TQEVCGLKW--SPDGRYLASGG------NDNLLNIWSGVPGQHTFST 456 (609)
Q Consensus 395 --------~dg~I~iwd~~~~~~~~~~~~~h--~~~V~~l~~--spdg~~lasgs------~Dg~I~iwd~~~~~~~~~~ 456 (609)
.+.+|.+||+.++ ..+.++... ......|.| +|+++++++++ .++.|.+|..+.+..
T Consensus 218 ~~~~~~~~~~d~V~v~D~~~~-k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~---- 292 (462)
T 2ece_A 218 KLEHLKDRYGNRIHFWDLRKR-KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW---- 292 (462)
T ss_dssp CTTTHHHHSCCEEEEEETTTT-EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE----
T ss_pred chhhhhhccCCEEEEEECCCC-cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce----
Confidence 3689999999986 456666542 134456656 99999887776 456887766554310
Q ss_pred cceEee--cC----------------CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC---CceeEEEcCCC----
Q psy4876 457 QPIHSL--SR----------------HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS---GACLDSIDTKS---- 511 (609)
Q Consensus 457 ~~~~~~--~~----------------h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t---~~~~~~~~~~~---- 511 (609)
.....+ .. -......|.+++||+.|+++.- ..+.|.+||+.. .+.+..+...+
T Consensus 293 ~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr--g~d~VavfdV~d~~~~~lv~~I~tGG~~~~ 370 (462)
T 2ece_A 293 NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW--GIGEVRQYDISNPFKPVLTGKVKLGGIFHR 370 (462)
T ss_dssp EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET--TTTEEEEEECSSTTSCEEEEEEECBTTTTC
T ss_pred eEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC--CCCEEEEEEecCCCCcEEEEEEEeCCeecc
Confidence 111110 00 0234678999999998888874 578999999863 35566665542
Q ss_pred -----------CeEEEEEcCCCCeEEEEE
Q psy4876 512 -----------QVCALLWNSDYKELVSAH 529 (609)
Q Consensus 512 -----------~v~sl~~s~~g~~l~~~s 529 (609)
....+.++++|++|+++.
T Consensus 371 ~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 371 ADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp BCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 368899999999999975
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=4.8e-06 Score=93.90 Aligned_cols=237 Identities=11% Similarity=0.045 Sum_probs=154.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCC----CceE-EEEecCCEEEEEec------CCeEEEEEcCCCCeeEEEEc
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHD----VRVG-ALAWNTYILSSGSR------CGNIVHHDVRSRDHKVALLQ 415 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~----~~V~-~l~~~~~~L~sgs~------dg~I~iwd~~~~~~~~~~~~ 415 (609)
+..|++++.|+.|..+|..+|+.+-.+.... ..+. .....+..++++.. +|.|..+|..++. .+..+.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~-~~W~~~ 195 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGK-LAWRFY 195 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC-EEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCc-EEEEec
Confidence 5678889999999999999999887765421 1111 11123445555543 5899999999985 555443
Q ss_pred cC-------------------------------CCCeEEEEEccCCCEEEEEeCCC-------------------cEEEE
Q psy4876 416 NH-------------------------------TQEVCGLKWSPDGRYLASGGNDN-------------------LLNIW 445 (609)
Q Consensus 416 ~h-------------------------------~~~V~~l~~spdg~~lasgs~Dg-------------------~I~iw 445 (609)
.. ......+++.+++.+++.++.++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 21 01112468888888888887765 39999
Q ss_pred eCCCCCCCCCccceEeecC--Cc-------ccEEEEEEcCCCC--cEEEEEeccCCCeEEEEECCCCceeEEEcCCC---
Q psy4876 446 SGVPGQHTFSTQPIHSLSR--HQ-------AAVKAIAWCPWSP--NVLASGGGTADRHIYFWNVSSGACLDSIDTKS--- 511 (609)
Q Consensus 446 d~~~~~~~~~~~~~~~~~~--h~-------~~V~~l~~sp~~~--~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~--- 511 (609)
|..++ +.+..+.. |. .+.....+..++. .+++.+ +.+|.++++|..+|+.+..+....
T Consensus 276 D~~tG------~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~--~~~G~l~~lD~~tG~~l~~~~~~~~~w 347 (668)
T 1kv9_A 276 RPDTG------KLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQA--PKNGFFYVLDRTNGKLISAEKFGKVTW 347 (668)
T ss_dssp CTTTC------CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC--CTTSEEEEEETTTCCEEEEEESSCCCS
T ss_pred cCCCC------ceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEE--CCCCEEEEEECCCCCEecccccccccc
Confidence 99999 44444432 21 2222222223443 245554 589999999999999884432211
Q ss_pred ----------C------------------------eEEEEEcCCCCeEEEEEe---------------------------
Q psy4876 512 ----------Q------------------------VCALLWNSDYKELVSAHG--------------------------- 530 (609)
Q Consensus 512 ----------~------------------------v~sl~~s~~g~~l~~~sG--------------------------- 530 (609)
+ -..++++|+...+++...
T Consensus 348 ~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 427 (668)
T 1kv9_A 348 AEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFAD 427 (668)
T ss_dssp EEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGG
T ss_pred ccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccc
Confidence 0 112677887777665221
Q ss_pred -------cCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhh
Q psy4876 531 -------FAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKE 593 (609)
Q Consensus 531 -------~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~ 593 (609)
..+|.|..||..+++.+.....+. .+....+...+.+|+.++.|+.|++||..+++...+..
T Consensus 428 ~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 428 ATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp CCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence 123889999999999887775432 33334455578899999999999999999888765443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=5.3e-06 Score=91.95 Aligned_cols=242 Identities=11% Similarity=0.014 Sum_probs=150.2
Q ss_pred EEEccCCCE----EEEEeCCCeEEEEeCCCCeeEEEecCCCC----ceE-EEEecCCEEEEEe------cCCeEEEEEcC
Q psy4876 341 VAWIQEGYM----LGVGTSLGTVQLWDVSAKKKCRTMDGHDV----RVG-ALAWNTYILSSGS------RCGNIVHHDVR 405 (609)
Q Consensus 341 v~~spdg~~----Lasgs~dg~I~iwd~~~~~~~~~l~~h~~----~V~-~l~~~~~~L~sgs------~dg~I~iwd~~ 405 (609)
++++|.+.. |++++.|+.|..+|..+|+.+-....... .+. .....+..+++++ .+|.|+.+|..
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~ 190 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVK 190 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETT
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECC
Confidence 455444444 88899999999999999998876543220 111 1112234555555 37999999999
Q ss_pred CCCeeEEEEccCCCC-------------------------------------e-EEEEEccCCCEEEEEeCC--------
Q psy4876 406 SRDHKVALLQNHTQE-------------------------------------V-CGLKWSPDGRYLASGGND-------- 439 (609)
Q Consensus 406 ~~~~~~~~~~~h~~~-------------------------------------V-~~l~~spdg~~lasgs~D-------- 439 (609)
+++ .+..+...... + ..+++.++..+++.++.+
T Consensus 191 TG~-~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~ 269 (599)
T 1w6s_A 191 TGE-QVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETM 269 (599)
T ss_dssp TCC-EEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGG
T ss_pred CCc-EEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcc
Confidence 985 44444322111 0 134566777777777654
Q ss_pred --------CcEEEEeCCCCCCCCCccceEeecC--Cc--------ccEEEEEEc-CCCC--cEEEEEeccCCCeEEEEEC
Q psy4876 440 --------NLLNIWSGVPGQHTFSTQPIHSLSR--HQ--------AAVKAIAWC-PWSP--NVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 440 --------g~I~iwd~~~~~~~~~~~~~~~~~~--h~--------~~V~~l~~s-p~~~--~llasggGs~Dg~I~iwd~ 498 (609)
+.|..+|.++++ .+..++. |. .++. +... .+|. .+++.+ +.+|.++++|.
T Consensus 270 r~gd~~y~~sv~Ald~~TG~------~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~--~~~G~l~~lD~ 340 (599)
T 1w6s_A 270 RPGDNKWTMTIFGRDADTGE------AKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHP--DRNGIVYTLDR 340 (599)
T ss_dssp SCSCCTTSSEEEEEETTTCC------EEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEE--CTTSEEEEEET
T ss_pred cCCCccccceEEEEeCCCCc------eeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEE--CCCcEEEEEEC
Confidence 379999999984 4433332 21 1221 2221 3453 345544 58999999999
Q ss_pred CCCceeEEEcCCC--------------C--------------------------eEEEEEcCCCCeEEEEEe--------
Q psy4876 499 SSGACLDSIDTKS--------------Q--------------------------VCALLWNSDYKELVSAHG-------- 530 (609)
Q Consensus 499 ~t~~~~~~~~~~~--------------~--------------------------v~sl~~s~~g~~l~~~sG-------- 530 (609)
.+|+.+....... + -..++++|+...+++...
T Consensus 341 ~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~ 420 (599)
T 1w6s_A 341 TDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEP 420 (599)
T ss_dssp TTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred CCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeec
Confidence 9999887654221 0 124567777666655310
Q ss_pred -----------------------c------CCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEE
Q psy4876 531 -----------------------F------AQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581 (609)
Q Consensus 531 -----------------------~------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iW 581 (609)
. ..|.|.-||..+++.+...... .++..-.+.-.+.+|+.++.|+.|+.|
T Consensus 421 ~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~ 499 (599)
T 1w6s_A 421 FMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKAR 499 (599)
T ss_dssp CCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEE
T ss_pred ccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEE
Confidence 1 3478999999999888776421 122211223357788889999999999
Q ss_pred EcCCCccchhhh
Q psy4876 582 KIFEKVKSKKKE 593 (609)
Q Consensus 582 dl~~~~~~~k~~ 593 (609)
|..+++..-+.+
T Consensus 500 D~~tG~~lW~~~ 511 (599)
T 1w6s_A 500 DSDTGDLLWKFK 511 (599)
T ss_dssp ETTTCCEEEEEE
T ss_pred ECCCCCEEEEee
Confidence 999988765443
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=6e-05 Score=86.65 Aligned_cols=271 Identities=11% Similarity=0.050 Sum_probs=173.7
Q ss_pred EEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEE
Q psy4876 272 LNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYML 350 (609)
Q Consensus 272 v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~L 350 (609)
|.++...+++ +.+++.++.|+.|+..+ +.............|.++...++|.+.
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~-------------------------~~~~~~~~~~~~~~i~~i~~d~~g~lw 229 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQ-------------------------KTFEKVIPILGTKQIQAILQQSPTRIW 229 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTT-------------------------CCEEECC----CCCEEEEEEEETTEEE
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCC-------------------------CeEEEecCCCCCCeeEEEEEcCCCCEE
Confidence 5667776665 55566666799999876 444333211235678888888877655
Q ss_pred EEEeCCCeEEEEeCCCCeeEEEecC-------CCCceEEEEec-CCEEEEEecCCeEEEEEcCCCCeeEEEEcc------
Q psy4876 351 GVGTSLGTVQLWDVSAKKKCRTMDG-------HDVRVGALAWN-TYILSSGSRCGNIVHHDVRSRDHKVALLQN------ 416 (609)
Q Consensus 351 asgs~dg~I~iwd~~~~~~~~~l~~-------h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~------ 416 (609)
+ |+.++-|.+||..+++....... ....|.++..+ ...|..|+.+ -|.+||..+.. ...+..
T Consensus 230 i-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~~~ 305 (795)
T 4a2l_A 230 V-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDS--FASYSSNPVENG 305 (795)
T ss_dssp E-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTE--EEEECCCTTSTT
T ss_pred E-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCe--EEEEecCCCCCC
Confidence 4 55444489999887665443222 13568898885 4456666665 58889987652 333321
Q ss_pred --CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec-------CCcccEEEEEEcCCCCcEEEEEec
Q psy4876 417 --HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS-------RHQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 417 --h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~llasggG 487 (609)
....|.++...++|.+ -.|+.++-|.+|+..... ...+. -....|.++...++|. +.+ |
T Consensus 306 ~l~~~~i~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~-------~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWi-G-- 373 (795)
T 4a2l_A 306 SLSQRSVRSIFMDSQGGM-WLGTYFGGLNYYHPIRNR-------FKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWI-G-- 373 (795)
T ss_dssp SCSSSCEEEEEECTTSCE-EEEESSSCEEEECGGGGS-------SEEECCCTTSSSCSCSSEEEEEECTTSC-EEE-E--
T ss_pred CCCCCcEEEEEEeCCcCE-EEEECCCCeEEeCCCccc-------ceEEcCCCCCCCCCCCeeEEEEECCCCC-EEE-E--
Confidence 2357999999998874 456676778899876441 11111 1245699999888774 444 2
Q ss_pred cCCCeEEEEECCCCceeEEEc---------CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe----CCC
Q psy4876 488 TADRHIYFWNVSSGACLDSID---------TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH----GHS 554 (609)
Q Consensus 488 s~Dg~I~iwd~~t~~~~~~~~---------~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~----~h~ 554 (609)
+.++-|..||..++....... ....|.+++..+++..|.+ |..++.|.+||..+++...... .+.
T Consensus 374 t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi--gt~~~Gl~~~d~~~~~~~~~~~~~~~l~~ 451 (795)
T 4a2l_A 374 TNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI--GTHAGGLSILHRNSGQVENFNQRNSQLVN 451 (795)
T ss_dssp ESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEE--EETTTEEEEEETTTCCEEEECTTTSCCSC
T ss_pred ECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEE--EeCcCceeEEeCCCCcEEEeecCCCCcCC
Confidence 367789999988776543321 1246889999888884444 3356789999988765433211 134
Q ss_pred CCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 555 ARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 555 ~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
..|.++...++|.+.+.. . +-|.+|+..++.
T Consensus 452 ~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~ 482 (795)
T 4a2l_A 452 ENVYAILPDGEGNLWLGT-L-SALVRFNPEQRS 482 (795)
T ss_dssp SCEEEEEECSSSCEEEEE-S-SCEEEEETTTTE
T ss_pred CeeEEEEECCCCCEEEEe-c-CceeEEeCCCCe
Confidence 679999998888855544 4 458888876543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.67 E-value=0.0001 Score=76.15 Aligned_cols=249 Identities=9% Similarity=-0.052 Sum_probs=155.1
Q ss_pred EEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEE
Q psy4876 274 LIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVG 353 (609)
Q Consensus 274 ~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasg 353 (609)
|.+..++..|..+....|+..++.. .....+. .....+..++|++.+..|+..
T Consensus 38 C~~~~~~~~ll~~~~~~I~~i~~~g-------------------------~~~~~~~--~~~~~~~~l~~d~~~~~ly~~ 90 (349)
T 3v64_C 38 CKALGPEPVLLFANRIDIRQVLPHR-------------------------SEYTLLL--NNLENAIALDFHHRRELVFWS 90 (349)
T ss_dssp EEESSSCCEEEEECBSCEEEECTTS-------------------------CCEEEEE--CSCSCEEEEEEETTTTEEEEE
T ss_pred ccccccCceeEeecccceEEEeCCC-------------------------CeeEEee--cCCCceEEEEEeccccEEEEE
Confidence 4444555566667777888888766 4333332 233568899999876665554
Q ss_pred -eCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccC
Q psy4876 354 -TSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPD 429 (609)
Q Consensus 354 -s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 429 (609)
...+.|..+++........+.........++++ +.++++-...+.|.+.++.... ....+...-....+|+++|.
T Consensus 91 D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~ 169 (349)
T 3v64_C 91 DVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPM 169 (349)
T ss_dssp ETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCSCEEEEEEETT
T ss_pred eccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEEEEeCCCCCcceEEEecC
Confidence 456889999988765444444333344555553 4555666667889999987653 23333334456789999996
Q ss_pred CCEEEEEe-CC-CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEE
Q psy4876 430 GRYLASGG-ND-NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI 507 (609)
Q Consensus 430 g~~lasgs-~D-g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~ 507 (609)
+..|+... .. +.|..+++... ...............|+|+|++..|+++- +..+.|..+|+........+
T Consensus 170 ~g~ly~td~~~~~~I~r~~~dG~------~~~~~~~~~~~~PnGla~d~~~~~lY~aD--~~~~~I~~~~~dG~~~~~~~ 241 (349)
T 3v64_C 170 EGTIYWTDWGNTPRIEASSMDGS------GRRIIADTHLFWPNGLTIDYAGRRMYWVD--AKHHVIERANLDGSHRKAVI 241 (349)
T ss_dssp TTEEEEEECSSSCEEEEEETTSC------SCEESCCSSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEE
T ss_pred cCeEEEeccCCCCEEEEEeCCCC------CcEEEEECCCCCcceEEEeCCCCEEEEEE--CCCCEEEEEeCCCCceEEEE
Confidence 65555444 34 78988888753 11111222344578999999887888776 36789999998754333333
Q ss_pred cC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEE
Q psy4876 508 DT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLA 561 (609)
Q Consensus 508 ~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~ 561 (609)
.. ......+++. ...++.+ ....+.|..++..+++.+..+........+|+
T Consensus 242 ~~~~~~P~giav~--~~~ly~t-d~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 293 (349)
T 3v64_C 242 SQGLPHPFAITVF--EDSLYWT-DWHTKSINSANKFTGKNQEIIRNKLHFPMDIH 293 (349)
T ss_dssp CSSCSSEEEEEEE--TTEEEEE-ETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred eCCCCCceEEEEE--CCEEEEe-cCCCCeEEEEEccCCCccEEeccCCCCCceEE
Confidence 22 3466788883 3345444 44678899888777766655543333333443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.65 E-value=8.3e-06 Score=79.85 Aligned_cols=188 Identities=12% Similarity=0.172 Sum_probs=129.7
Q ss_pred eeeeeecCCC--CeEEEEEccCCCEEEEEeCCC--eEEEEeCCCCeeEEEecCCCCce-EEEEecCCEEEEE-ecCCeEE
Q psy4876 327 DHLMDLEGNE--NVCSVAWIQEGYMLGVGTSLG--TVQLWDVSAKKKCRTMDGHDVRV-GALAWNTYILSSG-SRCGNIV 400 (609)
Q Consensus 327 ~~l~~~~h~~--~V~~v~~spdg~~Lasgs~dg--~I~iwd~~~~~~~~~l~~h~~~V-~~l~~~~~~L~sg-s~dg~I~ 400 (609)
+.+.++.|+. ....+.|+ ++.++.+.+.+| .|+++|+.+++.+..+....... ..++..++.|+.. ..++.+.
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGF 110 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEE
Confidence 3445556544 34889998 665555555555 89999999999988886543322 3466655555544 4688999
Q ss_pred EEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC--c---ccEEEEEEc
Q psy4876 401 HHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH--Q---AAVKAIAWC 475 (609)
Q Consensus 401 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h--~---~~V~~l~~s 475 (609)
+||..+.. .+..+.... . +..+++|+..|+.+..++.|.++|..+. +.+..+... . ..+..+.|.
T Consensus 111 v~D~~t~~-~~~ti~~~~-e--G~glt~dg~~L~~SdGs~~i~~iDp~T~------~v~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 111 VWNIRNLR-QVRSFNYDG-E--GWGLTHNDQYLIMSDGTPVLRFLDPESL------TPVRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp EEETTTCC-EEEEEECSS-C--CCCEEECSSCEEECCSSSEEEEECTTTC------SEEEEEECEETTEECCCEEEEEEE
T ss_pred EEECccCc-EEEEEECCC-C--ceEEecCCCEEEEECCCCeEEEEcCCCC------eEEEEEEeccCCccccccceeEEE
Confidence 99999874 566665322 2 2233456777777666788999999987 444444331 1 334567776
Q ss_pred CCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC-------------CCeEEEEEcCCCCeEEEEE
Q psy4876 476 PWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK-------------SQVCALLWNSDYKELVSAH 529 (609)
Q Consensus 476 p~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-------------~~v~sl~~s~~g~~l~~~s 529 (609)
+| .+++.. -.+..|.+.|..+|+.+..++.. .-...|+|+|+++.|++++
T Consensus 181 -~G-~lyan~--w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 181 -DG-EIFANV--WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp -TT-EEEEEE--TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred -CC-EEEEEE--ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 45 566654 36889999999999999888753 2468999999999888864
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.64 E-value=5e-06 Score=81.43 Aligned_cols=180 Identities=17% Similarity=0.142 Sum_probs=124.3
Q ss_pred ceeEEEEEecCCC--eEEEEcCC--eEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGG--SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~s 344 (609)
..+...|.|+ ++ +++.+.+| .|+++|+++ ++......+. .........
T Consensus 42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~T-------------------------gkv~~~~~l~--~~~FgeGit 93 (262)
T 3nol_A 42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIES-------------------------GKTLQQIELG--KRYFGEGIS 93 (262)
T ss_dssp TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTT-------------------------CCEEEEEECC--TTCCEEEEE
T ss_pred CcccceEEEE-CCEEEEECCCCCCceEEEEECCC-------------------------CcEEEEEecC--CccceeEEE
Confidence 4567889998 55 33455555 899999998 6665544443 333333333
Q ss_pred cCCCEEEEEe-CCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEcc--CC---
Q psy4876 345 QEGYMLGVGT-SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQN--HT--- 418 (609)
Q Consensus 345 pdg~~Lasgs-~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~--h~--- 418 (609)
++++.|+... .++.+.+||..+.+.+.++.... .-..+++++..|+.+..++.|.++|..+.. .+..+.- ..
T Consensus 94 ~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~-v~~~I~V~~~g~~~ 171 (262)
T 3nol_A 94 DWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLT-PVRTITVTAHGEEL 171 (262)
T ss_dssp EETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCS-EEEEEECEETTEEC
T ss_pred EeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCe-EEEEEEeccCCccc
Confidence 4565666554 47899999999999999987533 335677888777777778889999999874 4444332 12
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC------------cccEEEEEEcCCCCcEEEEE
Q psy4876 419 QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH------------QAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 419 ~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h------------~~~V~~l~~sp~~~~llasg 485 (609)
..++.+.|. +|+.++..-.++.|.+.|..++ +.+..+... ..-...|+|+|+++.++++|
T Consensus 172 ~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG------~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 172 PELNELEWV-DGEIFANVWQTNKIVRIDPETG------KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp CCEEEEEEE-TTEEEEEETTSSEEEEECTTTC------BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred cccceeEEE-CCEEEEEEccCCeEEEEECCCC------cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 335567886 7876666657889999999998 444333221 23468999999999999987
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.63 E-value=7e-05 Score=78.46 Aligned_cols=250 Identities=9% Similarity=-0.058 Sum_probs=157.5
Q ss_pred EEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEE
Q psy4876 274 LIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVG 353 (609)
Q Consensus 274 ~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasg 353 (609)
|.+..+...|..+....|+..++.. .....+.. ....+..++|.+.+..|+..
T Consensus 81 C~~~~~~~~l~~~~~~~I~~i~~~~-------------------------~~~~~~~~--~~~~~~gl~~d~~~~~ly~~ 133 (386)
T 3v65_B 81 CKALGPEPVLLFANRIDIRQVLPHR-------------------------SEYTLLLN--NLENAIALDFHHRRELVFWS 133 (386)
T ss_dssp EEECSSCCEEEEECBSCEEEECTTS-------------------------CCCEEEEC--SCSCEEEEEEETTTTEEEEE
T ss_pred ECCccccceeEeecCccceeeccCC-------------------------CcEEEEec--CCCccEEEEEecCCCeEEEE
Confidence 3344455566677778888888876 44433332 34568899999866555544
Q ss_pred -eCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccC
Q psy4876 354 -TSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPD 429 (609)
Q Consensus 354 -s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 429 (609)
...+.|..+++........+.........++++ +.++++-...+.|.+.++.... ....+...-....+|++.|.
T Consensus 134 D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~ 212 (386)
T 3v65_B 134 DVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPM 212 (386)
T ss_dssp ETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-CEEEECSSCSCEEEEEEETT
T ss_pred eCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eEEeecCCCCCCcEEEEEcC
Confidence 466889999988665444443333334445553 4555566667789998887543 23333334466889999997
Q ss_pred CCEEEEEeC-C-CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEE
Q psy4876 430 GRYLASGGN-D-NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI 507 (609)
Q Consensus 430 g~~lasgs~-D-g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~ 507 (609)
+..|+.... . +.|..+++... ...............|+|+|++..|+++- +..+.|..+|+........+
T Consensus 213 ~g~ly~td~~~~~~I~r~~~dG~------~~~~~~~~~~~~PnGlavd~~~~~lY~aD--~~~~~I~~~d~dG~~~~~~~ 284 (386)
T 3v65_B 213 EGTIYWTDWGNTPRIEASSMDGS------GRRIIADTHLFWPNGLTIDYAGRRMYWVD--AKHHVIERANLDGSHRKAVI 284 (386)
T ss_dssp TTEEEEEECSSSCEEEEEETTSC------SCEEEECSSCSCEEEEEEEGGGTEEEEEE--TTTTEEEEECTTSCSCEEEE
T ss_pred CCeEEEeccCCCCEEEEEeCCCC------CcEEEEECCCCCeeeEEEeCCCCEEEEEE--CCCCEEEEEeCCCCeeEEEE
Confidence 666655543 3 67888888754 22222223344578999999887888776 36789999998754333333
Q ss_pred c-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEE
Q psy4876 508 D-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAM 562 (609)
Q Consensus 508 ~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~ 562 (609)
. .......+++. +..++.+ ....+.|..++..+++.+..+........+|++
T Consensus 285 ~~~~~~P~giav~--~~~ly~t-d~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 285 SQGLPHPFAITVF--EDSLYWT-DWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp CSSCSSEEEEEEE--TTEEEEE-ETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred ECCCCCceEEEEE--CCEEEEe-eCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 3 23467788883 3344444 456888999997777776666544334444544
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=7.1e-06 Score=92.52 Aligned_cols=257 Identities=12% Similarity=0.099 Sum_probs=157.1
Q ss_pred CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecC---CCCeEE-EEEccCCCEEEEEeC-
Q psy4876 281 NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEG---NENVCS-VAWIQEGYMLGVGTS- 355 (609)
Q Consensus 281 ~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h---~~~V~~-v~~spdg~~Lasgs~- 355 (609)
.++.++.|+.|+.+|..+ ++..-...... ...+.+ ..+ .+..++++..
T Consensus 119 ~v~v~~~dg~l~alD~~t-------------------------G~~~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~ 171 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKT-------------------------GKAIWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGG 171 (668)
T ss_dssp EEEEECTTSEEEEEETTT-------------------------CCEEEEEECSCTTSSCBCCSCCEE--ETTEEEECCBC
T ss_pred EEEEEcCCCEEEEEECCC-------------------------CCEeeeeccCCCCCcceecCCCEE--ECCEEEEeCCC
Confidence 466677799999999988 44332222210 011111 111 1345555543
Q ss_pred -----CCeEEEEeCCCCeeEEEecCC--C-C----------------------------ceEEEEec--CCEEEEEecCC
Q psy4876 356 -----LGTVQLWDVSAKKKCRTMDGH--D-V----------------------------RVGALAWN--TYILSSGSRCG 397 (609)
Q Consensus 356 -----dg~I~iwd~~~~~~~~~l~~h--~-~----------------------------~V~~l~~~--~~~L~sgs~dg 397 (609)
+|.|..+|..+|+.+-.+... . . ....++++ ..+++.+..++
T Consensus 172 ~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g 251 (668)
T 1kv9_A 172 AEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNG 251 (668)
T ss_dssp TTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCE
T ss_pred CCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCC
Confidence 589999999999988776521 0 0 01124553 47888887766
Q ss_pred -------------------eEEEEEcCCCCeeEEEEcc--CC-------CCeEEEEEccCCC---EEEEEeCCCcEEEEe
Q psy4876 398 -------------------NIVHHDVRSRDHKVALLQN--HT-------QEVCGLKWSPDGR---YLASGGNDNLLNIWS 446 (609)
Q Consensus 398 -------------------~I~iwd~~~~~~~~~~~~~--h~-------~~V~~l~~spdg~---~lasgs~Dg~I~iwd 446 (609)
.|..+|..++. .+..++. |. .++....+..+|+ .++.++.+|.++++|
T Consensus 252 ~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~-~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD 330 (668)
T 1kv9_A 252 SPWNREVRSPGGGDNLYLSSILAIRPDTGK-LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLD 330 (668)
T ss_dssp ESSCHHHHSTTCCCCTTTTEEEEECTTTCC-EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEE
T ss_pred CccccCCCCCCCCCceeeeeEEEEcCCCCc-eeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEE
Confidence 39999999985 5555543 22 2333333334675 688999999999999
Q ss_pred CCCCCCCCCccceEeecCCc------------ccE------------------------EEEEEcCCCCcEEEEE-----
Q psy4876 447 GVPGQHTFSTQPIHSLSRHQ------------AAV------------------------KAIAWCPWSPNVLASG----- 485 (609)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~h~------------~~V------------------------~~l~~sp~~~~llasg----- 485 (609)
..+++. +....... .++ ..++++|+...+++..
T Consensus 331 ~~tG~~------l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~ 404 (668)
T 1kv9_A 331 RTNGKL------ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPG 404 (668)
T ss_dssp TTTCCE------EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCE
T ss_pred CCCCCE------eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccce
Confidence 999843 21111000 000 1256777655444311
Q ss_pred ----------------------------eccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEE
Q psy4876 486 ----------------------------GGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLI 537 (609)
Q Consensus 486 ----------------------------gGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~ 537 (609)
....++.|..||+.+|+.+-.+..........+...+..+++ |..++.|+
T Consensus 405 ~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~--g~~dg~l~ 482 (668)
T 1kv9_A 405 VYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ--GTAAGQMH 482 (668)
T ss_dssp EECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEE
T ss_pred EeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEE--ECCcccch
Confidence 011348899999999999888776655555555667788887 45899999
Q ss_pred EEECCCCceEEEEeCCCCCE-EEEEEeCCCC-EEEEEE
Q psy4876 538 IWKYPSLVKVAELHGHSARV-LNLAMSPDET-TVLSAG 573 (609)
Q Consensus 538 Iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~-~L~s~s 573 (609)
.||..+++.+..+....... .-+.+..+|+ +++.++
T Consensus 483 a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 483 AYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred hhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 99999999998886543211 2234455776 444444
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=0.00012 Score=84.02 Aligned_cols=270 Identities=11% Similarity=0.076 Sum_probs=176.6
Q ss_pred eeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeee-----c-CCCCeEEEEE
Q psy4876 270 YYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL-----E-GNENVCSVAW 343 (609)
Q Consensus 270 ~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~-h~~~V~~v~~ 343 (609)
..|.+|...+++.+-++.++.|.+||..+ +....+... . ....|.++..
T Consensus 263 ~~i~~i~~d~~g~lWigt~~Gl~~~~~~~-------------------------~~~~~~~~~~~~~~~l~~~~i~~i~~ 317 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIGTFNDLNIYHEGT-------------------------DSFASYSSNPVENGSLSQRSVRSIFM 317 (795)
T ss_dssp SBEEEEEECTTSCEEEEESSCEEEEETTT-------------------------TEEEEECCCTTSTTSCSSSCEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEeCChhheEcCCC-------------------------CeEEEEecCCCCCCCCCCCcEEEEEE
Confidence 45888888887644333344799999876 333332211 1 3467999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCCCeeEEEec------CCCCceEEEEec-CCEEEEEecCCeEEEEEcCCCCeeEEEEc-
Q psy4876 344 IQEGYMLGVGTSLGTVQLWDVSAKKKCRTMD------GHDVRVGALAWN-TYILSSGSRCGNIVHHDVRSRDHKVALLQ- 415 (609)
Q Consensus 344 spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~------~h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~~~~~~~~~~- 415 (609)
.++|.+. +|+.++-|.+|+..++....... -....|.++..+ ...|..|+.++-|..||..+.. ...+.
T Consensus 318 D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~--~~~~~~ 394 (795)
T 4a2l_A 318 DSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQR--FTSYTL 394 (795)
T ss_dssp CTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCC--EEEECC
T ss_pred eCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCc--EEEEec
Confidence 9888755 57777779999876554322211 124568888885 3467778888889999987653 22221
Q ss_pred --------cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec-----CCcccEEEEEEcCCCCcEE
Q psy4876 416 --------NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS-----RHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 416 --------~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-----~h~~~V~~l~~sp~~~~ll 482 (609)
.....|.++...++|+.|..|+.++-|.+||..++. ...+. .....|.++...+++. +.
T Consensus 395 ~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~-------~~~~~~~~~~l~~~~v~~i~~d~~g~-lw 466 (795)
T 4a2l_A 395 QEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ-------VENFNQRNSQLVNENVYAILPDGEGN-LW 466 (795)
T ss_dssp C------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC-------EEEECTTTSCCSCSCEEEEEECSSSC-EE
T ss_pred CCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc-------EEEeecCCCCcCCCeeEEEEECCCCC-EE
Confidence 123579999998899856667777779999988762 22221 2345789999888774 44
Q ss_pred EEEeccCCCeEEEEECCCCceeEEEcC-------CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe----
Q psy4876 483 ASGGGTADRHIYFWNVSSGACLDSIDT-------KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH---- 551 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~~~~~~~~-------~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~---- 551 (609)
+.. . +-|.+||..+++....... ...|.++...++|...+.. . +.|..||..+... .+.
T Consensus 467 igt---~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt---~-~Gl~~~~~~~~~~--~~~~~~~ 536 (795)
T 4a2l_A 467 LGT---L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG---E-EGLSVFKQEGLDI--QKASILP 536 (795)
T ss_dssp EEE---S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE---S-SCEEEEEEETTEE--EECCCSC
T ss_pred EEe---c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe---C-CceEEEeCCCCeE--EEecCCC
Confidence 432 3 5588999887754432211 2468899999888866642 3 5688898776654 332
Q ss_pred ---CCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 552 ---GHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 552 ---~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
.....|.++...++|.+.++. .. -|..||..+..
T Consensus 537 ~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~ 573 (795)
T 4a2l_A 537 VSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQ 573 (795)
T ss_dssp SCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTE
T ss_pred CCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCc
Confidence 123578999999999855543 33 57788876543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=2.5e-05 Score=86.42 Aligned_cols=237 Identities=12% Similarity=0.039 Sum_probs=148.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCC----ceE-E-EEecC----C-EEEEEec------CCeEEEEEcCCCCe
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDV----RVG-A-LAWNT----Y-ILSSGSR------CGNIVHHDVRSRDH 409 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~----~V~-~-l~~~~----~-~L~sgs~------dg~I~iwd~~~~~~ 409 (609)
+..|++++.|+.|..+|..+|+.+-....... .+. . +..++ . .+++++. +|.|..+|..+++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~- 195 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE- 195 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC-
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC-
Confidence 56788899999999999999998876653321 111 1 11223 2 5666553 7899999999875
Q ss_pred eEEEEccCCCC-----------------------------------------eEEEEEccCCCEEEEEeC----------
Q psy4876 410 KVALLQNHTQE-----------------------------------------VCGLKWSPDGRYLASGGN---------- 438 (609)
Q Consensus 410 ~~~~~~~h~~~-----------------------------------------V~~l~~spdg~~lasgs~---------- 438 (609)
.+......... -..+++.|+..+++.+..
T Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 44333221000 013466677677776663
Q ss_pred ----------C----CcEEEEeCCCCCCCCCccceEeec--CCc--------ccEEEEEEc-CCCC--cEEEEEeccCCC
Q psy4876 439 ----------D----NLLNIWSGVPGQHTFSTQPIHSLS--RHQ--------AAVKAIAWC-PWSP--NVLASGGGTADR 491 (609)
Q Consensus 439 ----------D----g~I~iwd~~~~~~~~~~~~~~~~~--~h~--------~~V~~l~~s-p~~~--~llasggGs~Dg 491 (609)
| +.|..+|..++ +.+..++ .|. .++. +... .+|. .+++.+ +.+|
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG------~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~--~~~G 346 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSG------EVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHA--DRNG 346 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTC------CEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEE--CTTS
T ss_pred ccCCCcccccCCcccceEEEEeCCCC------CEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEE--CCCc
Confidence 2 58999999999 4444432 221 1221 1221 3454 355555 5899
Q ss_pred eEEEEECCCCceeEEEcCCCC----------------------------------------------eEEEEEcCCCCeE
Q psy4876 492 HIYFWNVSSGACLDSIDTKSQ----------------------------------------------VCALLWNSDYKEL 525 (609)
Q Consensus 492 ~I~iwd~~t~~~~~~~~~~~~----------------------------------------------v~sl~~s~~g~~l 525 (609)
.++++|..+|+.+..+..... ...++++|+...+
T Consensus 347 ~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~ 426 (582)
T 1flg_A 347 FFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLF 426 (582)
T ss_dssp EEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCE
T ss_pred eEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEE
Confidence 999999999998876643320 0134666666666
Q ss_pred EEEEe-------------------------------cCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEEC
Q psy4876 526 VSAHG-------------------------------FAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGA 574 (609)
Q Consensus 526 ~~~sG-------------------------------~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~ 574 (609)
++... ..+|.|.-||..+++.+.....+. .+..-.....+.+|+.++.
T Consensus 427 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~ 505 (582)
T 1flg_A 427 YVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTG 505 (582)
T ss_dssp EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECT
T ss_pred EEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECC
Confidence 55321 136889999999999887765332 2222222235678888999
Q ss_pred CCCEEEEEcCCCccchhhhh
Q psy4876 575 DETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 575 Dg~I~iWdl~~~~~~~k~~~ 594 (609)
|+.|+.||..+++..-+.+.
T Consensus 506 dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 506 DGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp TSEEEEEETTTCCEEEEEEC
T ss_pred CCcEEEEECCCCCEEEEecC
Confidence 99999999999887655443
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=0.00031 Score=71.30 Aligned_cols=230 Identities=10% Similarity=-0.016 Sum_probs=143.5
Q ss_pred EEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEE-eCCCeEEE
Q psy4876 283 LAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVG-TSLGTVQL 361 (609)
Q Consensus 283 la~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasg-s~dg~I~i 361 (609)
|..+....|+..|+.+ .....+. .....+.+++|++.+..|+.+ ..++.|..
T Consensus 4 ll~~~~~~I~~i~~~~-------------------------~~~~~~~--~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~ 56 (316)
T 1ijq_A 4 LFFTNRHEVRKMTLDR-------------------------SEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICS 56 (316)
T ss_dssp EEEECBSSEEEEETTS-------------------------CCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEECCCeEEEEECCC-------------------------cceEehh--cCCCceEEEEEEeCCCEEEEEECCCCcEEE
Confidence 4456667788888877 4433332 234568899999876655555 45689999
Q ss_pred EeCCC----CeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEE
Q psy4876 362 WDVSA----KKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLA 434 (609)
Q Consensus 362 wd~~~----~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (609)
+++.. ......+...-.....++++ +.++++-...+.|.+.++.... ....+........+++++|.+..|+
T Consensus 57 ~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~iavdp~~g~ly 135 (316)
T 1ijq_A 57 TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMY 135 (316)
T ss_dssp EEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEE
T ss_pred EECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEEECCCCCcceEEeCCCCCEEE
Confidence 99876 22223333222344566653 3455555677899999987542 2223333345678999999666665
Q ss_pred EEeCC--CcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC--
Q psy4876 435 SGGND--NLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT-- 509 (609)
Q Consensus 435 sgs~D--g~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~-- 509 (609)
.+... +.|...++... ....+ ...-.....|+|++++..++++- +..+.|..+|+...........
T Consensus 136 ~~d~~~~~~I~~~~~dG~-------~~~~~~~~~~~~P~gla~d~~~~~lY~~D--~~~~~I~~~d~dg~~~~~~~~~~~ 206 (316)
T 1ijq_A 136 WTDWGTPAKIKKGGLNGV-------DIYSLVTENIQWPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEK 206 (316)
T ss_dssp EEECSSSCEEEEEETTSC-------CEEEEECSSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEEECTT
T ss_pred EEccCCCCeEEEEcCCCC-------CeEEEEECCCCCceEEEEeccCCEEEEEE--CCCCeEEEEecCCCceEEEeecCC
Confidence 55543 68888888643 22222 22345678999999887888776 3678999999974332222222
Q ss_pred -CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC
Q psy4876 510 -KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 510 -~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~ 552 (609)
......+++. +..++.+ ....+.|..++..+++.+..+..
T Consensus 207 ~~~~P~giav~--~~~ly~~-d~~~~~V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 207 RLAHPFSLAVF--EDKVFWT-DIINEAIFSANRLTGSDVNLLAE 247 (316)
T ss_dssp TTSSEEEEEEE--TTEEEEE-ETTTTEEEEEETTTCCCCEEEEC
T ss_pred ccCCcEEEEEE--CCEEEEE-ECCCCeEEEEeCCCCcceEEEec
Confidence 2356778884 3455554 35678999999877776665543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.5e-05 Score=75.70 Aligned_cols=181 Identities=11% Similarity=0.036 Sum_probs=124.1
Q ss_pred ceeEEEEEecCCCeEE-EEcC--CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFNVLA-VALG--GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~lla-~s~d--g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~sp 345 (609)
..+...|.|+.+.++. .+.. ..|+.+|+.+ ++......+. ..........
T Consensus 20 ~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~t-------------------------gkv~~~~~l~--~~~fgeGi~~ 72 (243)
T 3mbr_X 20 TAFTEGLFYLRGHLYESTGETGRSSVRKVDLET-------------------------GRILQRAEVP--PPYFGAGIVA 72 (243)
T ss_dssp TCCEEEEEEETTEEEEEECCTTSCEEEEEETTT-------------------------CCEEEEEECC--TTCCEEEEEE
T ss_pred ccccccEEEECCEEEEECCCCCCceEEEEECCC-------------------------CCEEEEEeCC--CCcceeEEEE
Confidence 4567889998855444 3343 4899999999 6665555543 2233333333
Q ss_pred CCCEEEE-EeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEcc--CC---C
Q psy4876 346 EGYMLGV-GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQN--HT---Q 419 (609)
Q Consensus 346 dg~~Las-gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~--h~---~ 419 (609)
.++.|+. ...++.+.+||..+.+.+.++.... .-..+++++..|+.+..++.|.++|..+.. .+..+.- +. .
T Consensus 73 ~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~-~~~~I~V~~~g~~~~ 150 (243)
T 3mbr_X 73 WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQ-QVGSIKVTAGGRPLD 150 (243)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCC-EEEEEECEETTEECC
T ss_pred eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCe-EEEEEEEccCCcccc
Confidence 4545554 4467899999999999999988543 336778888777777778999999999874 4444432 21 3
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-------------CcccEEEEEEcCCCCcEEEEE
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-------------HQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-------------h~~~V~~l~~sp~~~~llasg 485 (609)
.++.+.|. +|+.++..-.+..|.+.|..+++ .+..+.. ...-.+.|+|+|+++.++++|
T Consensus 151 ~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~------V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 151 NLNELEWV-NGELLANVWLTSRIARIDPASGK------VVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEEECTTTCB------EEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred cceeeEEe-CCEEEEEECCCCeEEEEECCCCC------EEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 45667776 67666666568899999999983 3333321 123568999999999999987
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.56 E-value=1e-05 Score=79.31 Aligned_cols=180 Identities=15% Similarity=0.070 Sum_probs=124.5
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
..+...|.|+.+. +++.+.+|.|+++|+++ ++..... +...--...+++ ++
T Consensus 54 ~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~T-------------------------gkv~~~~-l~~~~FgeGit~--~g 105 (268)
T 3nok_A 54 NAFTQGLVFHQGHFFESTGHQGTLRQLSLES-------------------------AQPVWME-RLGNIFAEGLAS--DG 105 (268)
T ss_dssp TCCEEEEEEETTEEEEEETTTTEEEECCSSC-------------------------SSCSEEE-ECTTCCEEEEEE--CS
T ss_pred ccccceEEEECCEEEEEcCCCCEEEEEECCC-------------------------CcEEeEE-CCCCcceeEEEE--eC
Confidence 3456778888654 44456678899999998 5554444 532211223444 44
Q ss_pred CEEEE-EeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEcc--CC---CCe
Q psy4876 348 YMLGV-GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQN--HT---QEV 421 (609)
Q Consensus 348 ~~Las-gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~--h~---~~V 421 (609)
+.|+. ...++.+.+||..+.+.+.++... ..-..+++++..|+.+..++.|.++|..+.. .+..+.- +. ..+
T Consensus 106 ~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~-v~~~I~V~~~g~~v~~l 183 (268)
T 3nok_A 106 ERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFA-LVGAVQVKLRGQPVELI 183 (268)
T ss_dssp SCEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCCEEEETTEEEEECSSSEEEEECTTTCC-EEEEEECEETTEECCCE
T ss_pred CEEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeEEecCCCEEEEECCCCEEEEEcCCCCe-EEEEEEeCCCCcccccc
Confidence 44444 456789999999999999998853 3346778888888888889999999998874 4444432 22 245
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-------------CcccEEEEEEcCCCCcEEEEE
Q psy4876 422 CGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-------------HQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 422 ~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-------------h~~~V~~l~~sp~~~~llasg 485 (609)
+.+.|. +|+.++..-.++.|.+.|..++ +.+..+.. ...-.+.|+|+|+++.|+++|
T Consensus 184 NeLe~~-dG~lyanvw~s~~I~vIDp~TG------~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 184 NELECA-NGVIYANIWHSSDVLEIDPATG------TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEEE-TTEEEEEETTCSEEEEECTTTC------BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred cccEEe-CCEEEEEECCCCeEEEEeCCCC------cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 677887 7766666656889999999998 34433321 123568999999999999987
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.2e-05 Score=86.68 Aligned_cols=254 Identities=13% Similarity=0.052 Sum_probs=151.5
Q ss_pred CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-C--CCCeEE-EEEccCCCEEEEEeC-
Q psy4876 281 NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-G--NENVCS-VAWIQEGYMLGVGTS- 355 (609)
Q Consensus 281 ~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h--~~~V~~-v~~spdg~~Lasgs~- 355 (609)
.+++++.|+.|+.+|..+ ++..-...+. + ...+.+ ... .+..+++++.
T Consensus 117 ~v~v~~~dg~l~alD~~t-------------------------G~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~ 169 (571)
T 2ad6_A 117 QIVKKQANGHLLALDAKT-------------------------GKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSG 169 (571)
T ss_dssp EEEEECTTSEEEEEETTT-------------------------CCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBC
T ss_pred EEEEEeCCCEEEEEECCC-------------------------CCEEEEecCCCCCccceeccCCEE--ECCEEEEEecC
Confidence 366667789999999988 4433222221 1 001111 111 1345666665
Q ss_pred -----CCeEEEEeCCCCeeEEEecCCCCc-------------------------------------e-EEEEec--CCEE
Q psy4876 356 -----LGTVQLWDVSAKKKCRTMDGHDVR-------------------------------------V-GALAWN--TYIL 390 (609)
Q Consensus 356 -----dg~I~iwd~~~~~~~~~l~~h~~~-------------------------------------V-~~l~~~--~~~L 390 (609)
+|.|..+|..+++.+-.+...... + ..++++ ...+
T Consensus 170 ~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~v 249 (571)
T 2ad6_A 170 AELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLF 249 (571)
T ss_dssp GGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEE
T ss_pred CccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeE
Confidence 789999999999988766532111 0 123443 3456
Q ss_pred EEEecC----------------CeEEEEEcCCCCeeEEEEcc--CC--------CCeEEEEEccCCC---EEEEEeCCCc
Q psy4876 391 SSGSRC----------------GNIVHHDVRSRDHKVALLQN--HT--------QEVCGLKWSPDGR---YLASGGNDNL 441 (609)
Q Consensus 391 ~sgs~d----------------g~I~iwd~~~~~~~~~~~~~--h~--------~~V~~l~~spdg~---~lasgs~Dg~ 441 (609)
+.+..+ +.|..+|..+++ .+..++. |. .++ -+....+|+ .++.++.+|.
T Consensus 250 y~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~-~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~ 327 (571)
T 2ad6_A 250 YYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGM-AKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGI 327 (571)
T ss_dssp EEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCC-EEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSE
T ss_pred EEECCCCccccCCccCCCceeEEEEEEEecCCCc-EEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcE
Confidence 555532 369999999875 5555442 21 222 123334774 5778889999
Q ss_pred EEEEeCCCCCCCCCccceEeecCCc-------------ccE--------------------------EEEEEcCCCCcEE
Q psy4876 442 LNIWSGVPGQHTFSTQPIHSLSRHQ-------------AAV--------------------------KAIAWCPWSPNVL 482 (609)
Q Consensus 442 I~iwd~~~~~~~~~~~~~~~~~~h~-------------~~V--------------------------~~l~~sp~~~~ll 482 (609)
++++|..+++. +....... .++ ..++++|+...++
T Consensus 328 l~~lD~~tG~~------~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~y 401 (571)
T 2ad6_A 328 LYTLNRENGNL------IVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLY 401 (571)
T ss_dssp EEEEETTTCCE------EEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEE
T ss_pred EEEEECCCCCE------EeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEE
Confidence 99999998843 32221100 111 2356777765555
Q ss_pred EEEe-------------------------------c---cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEE
Q psy4876 483 ASGG-------------------------------G---TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSA 528 (609)
Q Consensus 483 asgg-------------------------------G---s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~ 528 (609)
+... | ..++.|..||+.+++.+..+.....+....+...+..+++
T Consensus 402 v~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~- 480 (571)
T 2ad6_A 402 AGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWY- 480 (571)
T ss_dssp EEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE-
T ss_pred EEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEE-
Confidence 4321 0 1358999999999999888776554444344445666766
Q ss_pred EecCCCeEEEEECCCCceEEEEeCCCCC-EEEEEEeCCCCEEEE
Q psy4876 529 HGFAQNQLIIWKYPSLVKVAELHGHSAR-VLNLAMSPDETTVLS 571 (609)
Q Consensus 529 sG~~dg~I~Iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~L~s 571 (609)
+..++.|+.||..+++.+..+...... -.-+.+..+|+.++.
T Consensus 481 -g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 481 -ATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp -ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred -EcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 458999999999999999888643221 122345567775443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.51 E-value=0.00056 Score=71.89 Aligned_cols=244 Identities=9% Similarity=-0.032 Sum_probs=155.8
Q ss_pred CCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEE-eCCCe
Q psy4876 280 FNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVG-TSLGT 358 (609)
Q Consensus 280 ~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasg-s~dg~ 358 (609)
..+|..+....|+..++.. .....+. .....+..|+|++.+..|+.+ ...+.
T Consensus 83 ~~~ll~~~~~~I~~i~l~~-------------------------~~~~~~~--~~~~~~~~l~~d~~~~~lywsD~~~~~ 135 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDR-------------------------SEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRM 135 (400)
T ss_dssp SCEEEEEETTEEEEECTTS-------------------------CSCEEEE--CSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred cceeEEeccceeEEEccCC-------------------------cceeEec--cccCcceEEeeeeccCceEEEecCCCe
Confidence 3466677778999999876 4433332 245678899999876666555 45678
Q ss_pred EEEEeCCCC----eeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCC
Q psy4876 359 VQLWDVSAK----KKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR 431 (609)
Q Consensus 359 I~iwd~~~~----~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 431 (609)
|..+++... .....+.........++++ ++++++-...+.|.+.++.... ....+...-....+|++.|.+.
T Consensus 136 I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g 214 (400)
T 3p5b_L 136 ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHG 214 (400)
T ss_dssp EEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-EEEEEECSSCCEEEEEEETTTT
T ss_pred EEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc-eEEEEeCCCCCcceEEEecccC
Confidence 999998752 2333344344456666663 4555666667899999988653 3333333445688999999766
Q ss_pred EEEEEeC--CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC
Q psy4876 432 YLASGGN--DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT 509 (609)
Q Consensus 432 ~lasgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~ 509 (609)
+|+.... .+.|...++... .....+...-.....|++++++..|+++- +..+.|..+|+........+..
T Consensus 215 ~ly~td~~~~~~I~~~~~dG~------~~~~~~~~~l~~P~glavd~~~~~lY~aD--~~~~~I~~~d~dG~~~~~~~~~ 286 (400)
T 3p5b_L 215 FMYWTDWGTPAKIKKGGLNGV------DIYSLVTENIQWPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILED 286 (400)
T ss_dssp EEEEEECSSSCCEEEEETTSC------SCEEEECSSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCCCEEEEEC
T ss_pred eEEEEeCCCCCEEEEEeCCCC------ccEEEEECCCCceEEEEEEeCCCEEEEEE--CCCCEEEEEeCCCCccEEEEeC
Confidence 6665543 368999988754 22222233335678999999887787775 3678999999875443333332
Q ss_pred ---CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEE
Q psy4876 510 ---KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAM 562 (609)
Q Consensus 510 ---~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~ 562 (609)
-.....+++ ++..++.+ ....+.|..++..+++.+..+........+|.+
T Consensus 287 ~~~l~~P~gl~v--~~~~lywt-d~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 287 EKRLAHPFSLAV--FEDKVFWT-DIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp SSTTSSEEEEEE--ETTEEEEE-ESSSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred CCCCCCCEEEEE--eCCEEEEe-cCCCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 235567776 34455554 346788999998888777776654444555544
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.7e-05 Score=75.28 Aligned_cols=186 Identities=8% Similarity=0.019 Sum_probs=128.9
Q ss_pred eeeeecCC--CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCC-ceEEEEecC-CEEEEEecCCeEEEEE
Q psy4876 328 HLMDLEGN--ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDV-RVGALAWNT-YILSSGSRCGNIVHHD 403 (609)
Q Consensus 328 ~l~~~~h~--~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~-~V~~l~~~~-~~L~sgs~dg~I~iwd 403 (609)
.+.++.|+ .....+.|+ ++.+..+.+.+|.|+++|+++++.+..+ -... --..+++.+ .+.+....++.+.+||
T Consensus 45 Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 45 IIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp EEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEE
T ss_pred EEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEE
Confidence 34455543 445788887 3556666677789999999999988877 2222 223466754 5555556789999999
Q ss_pred cCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC--Cc---ccEEEEEEcCCC
Q psy4876 404 VRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR--HQ---AAVKAIAWCPWS 478 (609)
Q Consensus 404 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~--h~---~~V~~l~~sp~~ 478 (609)
..+. ..+..+... ..-.+++ +|++.|+.+..++.|+++|..+. +.+..+.. +. ..+..+.|. +|
T Consensus 123 ~~Tl-~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~------~v~~~I~V~~~g~~v~~lNeLe~~-dG 191 (268)
T 3nok_A 123 GMPP-QRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGF------ALVGAVQVKLRGQPVELINELECA-NG 191 (268)
T ss_dssp TTTT-EEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTC------CEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred CCcC-cEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCC------eEEEEEEeCCCCcccccccccEEe-CC
Confidence 9987 466666532 2223444 56788888777899999999987 44444432 11 245677877 55
Q ss_pred CcEEEEEeccCCCeEEEEECCCCceeEEEcCC--------------CCeEEEEEcCCCCeEEEEE
Q psy4876 479 PNVLASGGGTADRHIYFWNVSSGACLDSIDTK--------------SQVCALLWNSDYKELVSAH 529 (609)
Q Consensus 479 ~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~--------------~~v~sl~~s~~g~~l~~~s 529 (609)
.+++.. ..+..|.+.|..+|+.+..++.. .-...|+|+|+++.|+++.
T Consensus 192 -~lyanv--w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 192 -VIYANI--WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp -EEEEEE--TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred -EEEEEE--CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 566654 36889999999999999888642 2568999999988887753
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.49 E-value=5.1e-06 Score=93.55 Aligned_cols=245 Identities=10% Similarity=-0.010 Sum_probs=134.6
Q ss_pred cceeeeeeec--CCCCeEEEEEccCCCEEEEEeC-CCeEEEEeCCCCeeEEE--ecCCCCceEEEEe-cCCEEEEEe-cC
Q psy4876 324 RAIDHLMDLE--GNENVCSVAWIQEGYMLGVGTS-LGTVQLWDVSAKKKCRT--MDGHDVRVGALAW-NTYILSSGS-RC 396 (609)
Q Consensus 324 ~~~~~l~~~~--h~~~V~~v~~spdg~~Lasgs~-dg~I~iwd~~~~~~~~~--l~~h~~~V~~l~~-~~~~L~sgs-~d 396 (609)
+....+..+. +.....++++..+|+++++|+. +..+.+||..+++-... +........++.. ++++++.|+ .+
T Consensus 229 ~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~ 308 (656)
T 1k3i_A 229 GIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWS 308 (656)
T ss_dssp CCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCC
T ss_pred CcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCccc
Confidence 5555554443 3344456788899999999884 45899999987654332 2222223344555 789999988 34
Q ss_pred -----CeEEEEEcCCCCeeEEEEccC-----CCCeEEEEEccCCCEEEEEeCCC---------cEEEEeCCCCCCCCCcc
Q psy4876 397 -----GNIVHHDVRSRDHKVALLQNH-----TQEVCGLKWSPDGRYLASGGNDN---------LLNIWSGVPGQHTFSTQ 457 (609)
Q Consensus 397 -----g~I~iwd~~~~~~~~~~~~~h-----~~~V~~l~~spdg~~lasgs~Dg---------~I~iwd~~~~~~~~~~~ 457 (609)
..+.+||..+.. -..+... ...-....+..++..++.|+.+| .+..||..+.... .
T Consensus 309 ~~~~~~~~e~yd~~t~~--W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~---~ 383 (656)
T 1k3i_A 309 GGVFEKNGEVYSPSSKT--WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV---K 383 (656)
T ss_dssp SSSCCCCEEEEETTTTE--EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE---E
T ss_pred CCcccccceEeCCCCCc--ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCccee---e
Confidence 468999998753 2222100 00000012224555555565443 5678888765211 1
Q ss_pred ceEeecC------CcccEEEEEEcCCCCcEEEEEeccC-C-----C---eEEEEECCCCceeEEE--cCC-C-CeEEEEE
Q psy4876 458 PIHSLSR------HQAAVKAIAWCPWSPNVLASGGGTA-D-----R---HIYFWNVSSGACLDSI--DTK-S-QVCALLW 518 (609)
Q Consensus 458 ~~~~~~~------h~~~V~~l~~sp~~~~llasggGs~-D-----g---~I~iwd~~t~~~~~~~--~~~-~-~v~sl~~ 518 (609)
....... ....-.++.|...+..+++.||... + . .|.+||..+..-.... ... . .-.+++.
T Consensus 384 ~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~ 463 (656)
T 1k3i_A 384 SAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVV 463 (656)
T ss_dssp EEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEE
T ss_pred cCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEE
Confidence 1111100 0112245555554557888875211 1 1 6888888876654433 111 1 2345566
Q ss_pred cCCCCeEEEEEecC----------CCeEEEEECCCCceEE--EEeCCCCCEEEEEEeCCCCEEEEEEC
Q psy4876 519 NSDYKELVSAHGFA----------QNQLIIWKYPSLVKVA--ELHGHSARVLNLAMSPDETTVLSAGA 574 (609)
Q Consensus 519 s~~g~~l~~~sG~~----------dg~I~Iwd~~~~~~~~--~l~~h~~~V~~l~~spdg~~L~s~s~ 574 (609)
.++++.+++. |.. -..+.+||..+.+-.. .+...........+.|||++++.||.
T Consensus 464 l~~g~i~v~G-G~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 464 LPDGSTFITG-GQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CTTSCEEEEC-CBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCEEEEC-CcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 7888888774 322 2568999987654221 11111222234556799999999885
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.46 E-value=9.1e-05 Score=71.79 Aligned_cols=189 Identities=11% Similarity=0.083 Sum_probs=128.5
Q ss_pred eeeeeeecCC--CCeEEEEEccCCCEEEEEeCC--CeEEEEeCCCCeeEEEecCCCCce-EEEEecC-CEEEEEecCCeE
Q psy4876 326 IDHLMDLEGN--ENVCSVAWIQEGYMLGVGTSL--GTVQLWDVSAKKKCRTMDGHDVRV-GALAWNT-YILSSGSRCGNI 399 (609)
Q Consensus 326 ~~~l~~~~h~--~~V~~v~~spdg~~Lasgs~d--g~I~iwd~~~~~~~~~l~~h~~~V-~~l~~~~-~~L~sgs~dg~I 399 (609)
.+.+.+++|+ .....+.|+. +.++.+.+.+ ..|+++|+.+++.++.+....... ..++..+ ++......++.+
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred eEEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE
Confidence 3455555644 5577999986 4444444444 489999999999988876443322 3455544 555555678999
Q ss_pred EEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCc-----ccEEEEEE
Q psy4876 400 VHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQ-----AAVKAIAW 474 (609)
Q Consensus 400 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-----~~V~~l~~ 474 (609)
.+||..+. ..+..+.... .-.+++ +++..|+.+..++.|.++|..+. +.+..+.... ..+..+.|
T Consensus 88 ~v~D~~tl-~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~------~~~~~I~V~~~g~~~~~lNeLe~ 157 (243)
T 3mbr_X 88 FVYDLATL-TPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTL------QQVGSIKVTAGGRPLDNLNELEW 157 (243)
T ss_dssp EEEETTTT-EEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTC------CEEEEEECEETTEECCCEEEEEE
T ss_pred EEEECCcC-cEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCC------eEEEEEEEccCCcccccceeeEE
Confidence 99999987 4666665332 223444 56777777677899999999987 4444443321 34566777
Q ss_pred cCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC--------------CCeEEEEEcCCCCeEEEEE
Q psy4876 475 CPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK--------------SQVCALLWNSDYKELVSAH 529 (609)
Q Consensus 475 sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~--------------~~v~sl~~s~~g~~l~~~s 529 (609)
. +| .+++.. -.+..|.+.|..+|+.+..++.. .-...|+|+|+++.|+++.
T Consensus 158 ~-~G-~lyanv--w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 158 V-NG-ELLANV--WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp E-TT-EEEEEE--TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred e-CC-EEEEEE--CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 6 34 466554 35789999999999999888622 2468999999988888764
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00039 Score=71.64 Aligned_cols=238 Identities=9% Similarity=-0.015 Sum_probs=150.5
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
.+..+|.+..++ .+|+.+.. ..|+..++........+. ....+..++|+ +.++++-...+.|..+++.... ..
T Consensus 33 ~d~~~C~~~~~~-~~ll~~~~-~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~ 108 (349)
T 3v64_C 33 PDRRSCKALGPE-PVLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VE 108 (349)
T ss_dssp TTSSCEEESSSC-CEEEEECB-SCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred CCCCcccccccC-ceeEeecc-cceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC-ce
Confidence 344556665553 45554444 568888887655444444 34557889995 3455555567889999988653 22
Q ss_pred EEEccCCCCeEEEEEccCCCEE-EEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCC
Q psy4876 412 ALLQNHTQEVCGLKWSPDGRYL-ASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD 490 (609)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~l-asgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~D 490 (609)
..+........++++.+.+..| ++-...+.|.+.++... .....+.........++++|.+..++.+.. ..
T Consensus 109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~------~~~~l~~~~l~~P~~iavdp~~g~ly~td~--~~ 180 (349)
T 3v64_C 109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA------HRKVLLWQSLEKPRAIALHPMEGTIYWTDW--GN 180 (349)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC------SCEEEECTTCSCEEEEEEETTTTEEEEEEC--SS
T ss_pred EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC------ceEEEEeCCCCCcceEEEecCcCeEEEecc--CC
Confidence 3333333456789999855444 55555678999998754 222223333456789999998778887763 34
Q ss_pred -CeEEEEECCCCceeEEE-c-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCC
Q psy4876 491 -RHIYFWNVSSGACLDSI-D-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET 567 (609)
Q Consensus 491 -g~I~iwd~~t~~~~~~~-~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 567 (609)
+.|..+++.... ...+ . .-.....+++++++..|+.+- ...+.|..+++........+.........|++. .+.
T Consensus 181 ~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD-~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ 257 (349)
T 3v64_C 181 TPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVD-AKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDS 257 (349)
T ss_dssp SCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTE
T ss_pred CCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEE-CCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCE
Confidence 889999987433 3333 2 234678999999888888764 467899999987544333343344566788883 444
Q ss_pred EEEEEECCCCEEEEEcCCCc
Q psy4876 568 TVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 568 ~L~s~s~Dg~I~iWdl~~~~ 587 (609)
++++-...+.|..++-.++.
T Consensus 258 ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 258 LYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EEEEETTTTEEEEEETTTCC
T ss_pred EEEecCCCCeEEEEEccCCC
Confidence 44555556777777754443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00034 Score=71.13 Aligned_cols=244 Identities=8% Similarity=0.010 Sum_probs=148.1
Q ss_pred CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEE-EEeCCCeE
Q psy4876 281 NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLG-VGTSLGTV 359 (609)
Q Consensus 281 ~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~La-sgs~dg~I 359 (609)
-+|..+....|+..++.. ........+.....+.+++|.+.+..|+ +-...+.|
T Consensus 5 p~ll~~~~~~I~~i~l~~-------------------------~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I 59 (318)
T 3sov_A 5 PLLLYANRRDLRLVDATN-------------------------GKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAI 59 (318)
T ss_dssp CEEEEECEEEEEEEETTC-------------------------TTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEE
T ss_pred cEEEEEccCeEEEEECCC-------------------------CceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcE
Confidence 355566677888898876 2211111111224577899998655554 44556789
Q ss_pred EEEeCCCCee-EEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEE
Q psy4876 360 QLWDVSAKKK-CRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLAS 435 (609)
Q Consensus 360 ~iwd~~~~~~-~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 435 (609)
..+++..+.. ...+...-.....++++ +.++++-...+.|.++++.... .............+|++.|.+..|+.
T Consensus 60 ~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~~~~P~giavdp~~g~ly~ 138 (318)
T 3sov_A 60 KRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYW 138 (318)
T ss_dssp EEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEEGGGTEEEE
T ss_pred EEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-EEEEEeCCCCCccEEEEeCCCCEEEE
Confidence 9999876532 12222222334455553 4555666667899999987643 22233344456789999997666665
Q ss_pred EeC--CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc-CCCC
Q psy4876 436 GGN--DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID-TKSQ 512 (609)
Q Consensus 436 gs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~-~~~~ 512 (609)
+.. .+.|...++... .........-.....|+|++++..|+.+- +..+.|..+|+........+. ....
T Consensus 139 td~~~~~~I~r~~~dG~------~~~~~~~~~l~~Pnglavd~~~~~lY~aD--~~~~~I~~~d~dG~~~~~~~~~~~~~ 210 (318)
T 3sov_A 139 TDWGEVPKIERAGMDGS------SRFIIINSEIYWPNGLTLDYEEQKLYWAD--AKLNFIHKSNLDGTNRQAVVKGSLPH 210 (318)
T ss_dssp EECSSSCEEEEEETTSC------SCEEEECSSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEECSCCSC
T ss_pred EecCCCCEEEEEEcCCC------CeEEEEECCCCCccEEEEeccCCEEEEEE--CCCCEEEEEcCCCCceEEEecCCCCC
Confidence 552 578888888743 11112222334568999999887888775 367899999987433322233 2345
Q ss_pred eEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEE
Q psy4876 513 VCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLA 561 (609)
Q Consensus 513 v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~ 561 (609)
...+++. +..++.+ ....+.|..++..+++....+........+|+
T Consensus 211 P~glav~--~~~lywt-d~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~ 256 (318)
T 3sov_A 211 PFALTLF--EDILYWT-DWSTHSILACNKYTGEGLREIHSDIFSPMDIH 256 (318)
T ss_dssp EEEEEEE--TTEEEEE-ETTTTEEEEEETTTCCSCEEEECCCSSCCCEE
T ss_pred ceEEEEe--CCEEEEE-ecCCCeEEEEECCCCCceEEEeCCCCCCcEEE
Confidence 6777775 3345444 44688999999888876666544333333443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00037 Score=79.89 Aligned_cols=272 Identities=10% Similarity=-0.005 Sum_probs=172.2
Q ss_pred eeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeee------------ec-CC
Q psy4876 270 YYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMD------------LE-GN 335 (609)
Q Consensus 270 ~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------~~-h~ 335 (609)
..|.+|...+++ +..++..+.|.++|..+ ........ .. ..
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~-------------------------~~~~~~~~~~f~~~~~~~~~~~l~~ 312 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQ-------------------------NQFLLPEQIRFEFIREGDNNYSLSN 312 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTC-------------------------C---------CEEECBCSSTTSBSS
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCC-------------------------CeeeeeeccccccccCCCCCCCCCC
Confidence 357888887777 44455548899999876 22211111 01 35
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEec---------CCCCceEEEEecC-CEEEEEecCCeEEEEEcC
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMD---------GHDVRVGALAWNT-YILSSGSRCGNIVHHDVR 405 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~---------~h~~~V~~l~~~~-~~L~sgs~dg~I~iwd~~ 405 (609)
..|.++....+|.+ .+|+.++-|..|+........... .....|.++..+. ..|..|+.++-|..||..
T Consensus 313 ~~v~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~ 391 (781)
T 3v9f_A 313 ASARYIFQDSFNNI-WIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENG 391 (781)
T ss_dssp SCEEEEEECSSCCE-EEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETT
T ss_pred CeEEEEEEeCCCCE-EEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECC
Confidence 67999999888864 457766779999987654332211 1235688888853 567778877779999876
Q ss_pred CCCeeEEEE----ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec---CCcccEEEEEEcCCC
Q psy4876 406 SRDHKVALL----QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS---RHQAAVKAIAWCPWS 478 (609)
Q Consensus 406 ~~~~~~~~~----~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~~ 478 (609)
+.. ...+ ......|.++...++|.+.+ |+.++-|..+|..++ + ...+. .....|.++...+++
T Consensus 392 ~~~--~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~------~-~~~~~~~~~~~~~v~~i~~d~~g 461 (781)
T 3v9f_A 392 KRV--AIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK------K-FQIIELEKNELLDVRVFYEDKNK 461 (781)
T ss_dssp EEE--EECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC------E-EEECCSTTTCCCCEEEEEECTTS
T ss_pred CCe--EEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC------c-EEEeccCCCCCCeEEEEEECCCC
Confidence 531 2111 12346789999888887555 666677899998765 2 22221 234678999888876
Q ss_pred CcEEEEEeccCCCeEEEEECCCCceeEEEcC------CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC
Q psy4876 479 PNVLASGGGTADRHIYFWNVSSGACLDSIDT------KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 479 ~~llasggGs~Dg~I~iwd~~t~~~~~~~~~------~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~ 552 (609)
. +.+.. . +-|..||..+++....... ...|.++...++|...+.. ..+-|..||..+.+. ..+..
T Consensus 462 ~-lwigt---~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt---~~~Gl~~~~~~~~~~-~~~~~ 532 (781)
T 3v9f_A 462 K-IWIGT---H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT---FGGGVGIYTPDMQLV-RKFNQ 532 (781)
T ss_dssp E-EEEEE---T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE---SSSCEEEECTTCCEE-EEECT
T ss_pred C-EEEEE---C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE---cCCCEEEEeCCCCeE-EEccC
Confidence 3 44432 3 5699999887765443322 2468899999988876642 345588888766543 33321
Q ss_pred ----CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 553 ----HSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 553 ----h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
....|.++...++|.+.++ +.+|.|..||..+..
T Consensus 533 ~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 533 YEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFD 570 (781)
T ss_dssp TTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCC
T ss_pred CCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCc
Confidence 2356899999888885554 446655777776543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.40 E-value=0.0004 Score=72.62 Aligned_cols=236 Identities=8% Similarity=-0.035 Sum_probs=150.3
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEE
Q psy4876 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALL 414 (609)
Q Consensus 338 V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~ 414 (609)
-.|.+..+ ..+|+.+.. ..|+.+++........+. ....+..++|+ +.++++-...+.|..+++.... ....+
T Consensus 79 ~~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~~ 154 (386)
T 3v65_B 79 RSCKALGP-EPVLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEVV 154 (386)
T ss_dssp SCEEECSS-CCEEEEECB-SCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-EEEEE
T ss_pred CeECCccc-cceeEeecC-ccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-cEEEE
Confidence 34555444 345554444 568889987765544444 34557889995 3455555567889999988653 22333
Q ss_pred ccCCCCeEEEEEccCCCEE-EEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCC-Ce
Q psy4876 415 QNHTQEVCGLKWSPDGRYL-ASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD-RH 492 (609)
Q Consensus 415 ~~h~~~V~~l~~spdg~~l-asgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~D-g~ 492 (609)
........++++.+.+..| ++-...+.|.+.++... .....+.........|+++|.+..++.+.. .. +.
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~------~~~~l~~~~l~~P~giavdp~~g~ly~td~--~~~~~ 226 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA------HRKVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPR 226 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC------SCEEEECSSCSCEEEEEEETTTTEEEEEEC--SSSCE
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC------ceEEeecCCCCCCcEEEEEcCCCeEEEecc--CCCCE
Confidence 3333456788999855544 45455678998888754 222223333456789999998878887763 34 78
Q ss_pred EEEEECCCCceeEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEE
Q psy4876 493 IYFWNVSSGACLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571 (609)
Q Consensus 493 I~iwd~~t~~~~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s 571 (609)
|..+++........+.. -.....|+|++++..|+.+- ...+.|..+++........+.........|++. .+.++++
T Consensus 227 I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD-~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~t 304 (386)
T 3v65_B 227 IEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD-AKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWT 304 (386)
T ss_dssp EEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEE-TTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEE
T ss_pred EEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEE-CCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEe
Confidence 99999875433333332 34688999999888888764 467889999987544433344344566788883 4445555
Q ss_pred EECCCCEEEEEcCCCc
Q psy4876 572 AGADETLRLWKIFEKV 587 (609)
Q Consensus 572 ~s~Dg~I~iWdl~~~~ 587 (609)
....+.|..++..++.
T Consensus 305 d~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 305 DWHTKSINSANKFTGK 320 (386)
T ss_dssp ETTTTEEEEEETTTCC
T ss_pred eCCCCeEEEEECCCCc
Confidence 5566778888754544
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00025 Score=71.79 Aligned_cols=231 Identities=10% Similarity=0.052 Sum_probs=134.5
Q ss_pred EEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeee------------------
Q psy4876 273 NLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL------------------ 332 (609)
Q Consensus 273 ~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------ 332 (609)
..++|++++ +++...++.|+.|+..+ +....+...
T Consensus 22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~ 76 (322)
T 2fp8_A 22 NSFTFDSTNKGFYTSVQDGRVIKYEGPN-------------------------SGFVDFAYASPYWNKAFCENSTDAEKR 76 (322)
T ss_dssp CCEECCTTCSSEEEECTTSEEEEECCTT-------------------------TCEEEEEESCTTCCHHHHTTCCCGGGH
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEECCCC-------------------------CceEEEecccccccccccccccchhcc
Confidence 447888875 55555678999998776 222211110
Q ss_pred cCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCeeEEEecC-----CCCceEEEEec---CCEEEEEec--------
Q psy4876 333 EGNENVCSVAWIQ-EGYMLGVGTSLGTVQLWDVSAKKKCRTMDG-----HDVRVGALAWN---TYILSSGSR-------- 395 (609)
Q Consensus 333 ~h~~~V~~v~~sp-dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~-----h~~~V~~l~~~---~~~L~sgs~-------- 395 (609)
.....+..+++.+ +| .|+++...+.|.++|..++.. ..+.. .......++++ +.+.++-..
T Consensus 77 ~~~~~p~gi~~~~~~g-~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~ 154 (322)
T 2fp8_A 77 PLCGRTYDISYNLQNN-QLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGV 154 (322)
T ss_dssp HHHCCEEEEEEETTTT-EEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred ccCCCCceEEEcCCCC-cEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCccccccccc
Confidence 0113578899998 55 455565555688898776543 22211 11245667774 344444322
Q ss_pred ---------CCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCCCCCCccceEeecCC
Q psy4876 396 ---------CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASG-GNDNLLNIWSGVPGQHTFSTQPIHSLSRH 465 (609)
Q Consensus 396 ---------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h 465 (609)
+|.|..||..++. +..+.........|+|+++|++|.++ ...+.|.+|++..... .....+...
T Consensus 155 ~~~~~~~~~~g~v~~~d~~~~~--~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~----~~~~~~~~~ 228 (322)
T 2fp8_A 155 QQIMDTSDKTGRLIKYDPSTKE--TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK----GTAEVLVKI 228 (322)
T ss_dssp HHHHHHTCCCEEEEEEETTTTE--EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT----TCEEEEEEC
T ss_pred ceehcccCCCceEEEEeCCCCE--EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC----CccceEEeC
Confidence 3678888876653 22222122345689999999866655 4568899999875311 111111112
Q ss_pred cccEEEEEEcCCCCcEEEEEec--------cCCCeEEEEECCCCceeEEEcCC-----CCeEEEEEcCCCCeEEEEEecC
Q psy4876 466 QAAVKAIAWCPWSPNVLASGGG--------TADRHIYFWNVSSGACLDSIDTK-----SQVCALLWNSDYKELVSAHGFA 532 (609)
Q Consensus 466 ~~~V~~l~~sp~~~~llasggG--------s~Dg~I~iwd~~t~~~~~~~~~~-----~~v~sl~~s~~g~~l~~~sG~~ 532 (609)
.+ ...+++.++|. ++++..+ ...+.|..+|. .++.+..+... ..+..+++ .++ .|+++ +..
T Consensus 229 ~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g-~L~v~-~~~ 302 (322)
T 2fp8_A 229 PN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDG-LLYIG-TLF 302 (322)
T ss_dssp SS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETT-EEEEE-CSS
T ss_pred CC-CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCC-EEEEe-ecC
Confidence 23 67899999985 5555421 01467888886 47777766543 24666666 344 44443 346
Q ss_pred CCeEEEEECC
Q psy4876 533 QNQLIIWKYP 542 (609)
Q Consensus 533 dg~I~Iwd~~ 542 (609)
.+.|.++++.
T Consensus 303 ~~~i~~~~~~ 312 (322)
T 2fp8_A 303 HGSVGILVYD 312 (322)
T ss_dssp CSEEEEEEC-
T ss_pred CCceEEEecc
Confidence 7788888864
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.0023 Score=65.07 Aligned_cols=268 Identities=10% Similarity=0.059 Sum_probs=147.1
Q ss_pred eEEEEEecCC-CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeee-ec-CCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHF-NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMD-LE-GNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~-~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-h~~~V~~v~~spdg 347 (609)
.+..|.+.++ .+++++..+.|+.. ...+ ...+.+.. .. ....+.+|.|.+ +
T Consensus 37 ~~~~v~~~~~~~~~~~G~~g~i~~s-~DgG------------------------~tW~~~~~~~~~~~~~~~~i~~~~-~ 90 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLVGVNATLMET-RDGG------------------------QTWEPRTLVLDHSDYRFNSVSFQG-N 90 (327)
T ss_dssp CEEEEEESSSSCEEEEETTTEEEEE-SSTT------------------------SSCEECCCCCSCCCCEEEEEEEET-T
T ss_pred cEEEEEECCCCcEEEEcCCCeEEEe-CCCC------------------------CCCeECCCCCCCCCccEEEEEecC-C
Confidence 4777888655 46667877766433 2220 12222211 11 245688899976 4
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEec---CCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMD---GHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
..++ ++..|.|.. ..+.++.-..+. .+...+..+.+ ++..++.++.+|.|..- .+.+..-......+...+..
T Consensus 91 ~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~ 167 (327)
T 2xbg_A 91 EGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRN 167 (327)
T ss_dssp EEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEE
T ss_pred eEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEE
Confidence 4444 445565543 333344333332 23345677776 34444445556654331 22222222233455667899
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC 503 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~ 503 (609)
+++.+++.+++++...+.++-+|-. +. ..+.+. ......+..+.+.+++ .+++.+ .+|.+++.+...|+.
T Consensus 168 ~~~~~~~~~~~~g~~G~~~~S~d~g-G~---tW~~~~--~~~~~~~~~~~~~~~g-~~~~~~---~~G~~~~s~~D~G~t 237 (327)
T 2xbg_A 168 LNRSPSGEYVAVSSRGSFYSTWEPG-QT---AWEPHN--RTTSRRLHNMGFTPDG-RLWMIV---NGGKIAFSDPDNSEN 237 (327)
T ss_dssp EEECTTSCEEEEETTSSEEEEECTT-CS---SCEEEE--CCSSSCEEEEEECTTS-CEEEEE---TTTEEEEEETTEEEE
T ss_pred EEEcCCCcEEEEECCCcEEEEeCCC-CC---ceeECC--CCCCCccceeEECCCC-CEEEEe---CCceEEEecCCCCCe
Confidence 9999999888776554434444421 21 012221 2345678899999887 455554 578887775333433
Q ss_pred eEEEcC-----CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe---CCCCCEEEEEEeCCCCEEEEEECC
Q psy4876 504 LDSIDT-----KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH---GHSARVLNLAMSPDETTVLSAGAD 575 (609)
Q Consensus 504 ~~~~~~-----~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~L~s~s~D 575 (609)
-..+.. ...+..+.+.+++..+++ | .++.| ++....++.-..+. .+...+.++.|.+++ .++.++.+
T Consensus 238 W~~~~~~~~~~~~~~~~v~~~~~~~~~~~--g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~ 312 (327)
T 2xbg_A 238 WGELLSPLRRNSVGFLDLAYRTPNEVWLA--G-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQK 312 (327)
T ss_dssp ECCCBCTTSSCCSCEEEEEESSSSCEEEE--E-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECST
T ss_pred eEeccCCcccCCcceEEEEecCCCEEEEE--e-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCC
Confidence 222221 235888999988776665 3 46666 34444444333333 234567889887554 57777789
Q ss_pred CCEEEEE
Q psy4876 576 ETLRLWK 582 (609)
Q Consensus 576 g~I~iWd 582 (609)
|.|.-++
T Consensus 313 G~i~~~~ 319 (327)
T 2xbg_A 313 GILLRYV 319 (327)
T ss_dssp TEEEEEC
T ss_pred ceEEEEc
Confidence 9776554
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00055 Score=78.43 Aligned_cols=273 Identities=9% Similarity=0.013 Sum_probs=167.9
Q ss_pred eEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeee-----c-CCCCeEEEEE
Q psy4876 271 YLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL-----E-GNENVCSVAW 343 (609)
Q Consensus 271 ~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~-h~~~V~~v~~ 343 (609)
.|.+|...+++ +..++.+ .|.+||..+ +........ . ....|.++..
T Consensus 212 ~i~~i~~d~~g~lwigt~~-Gl~~~d~~~-------------------------~~~~~~~~~~~~~~~l~~~~i~~i~~ 265 (781)
T 3v9f_A 212 DVRCIYKDTNGNIWIGTSK-GLALFNANT-------------------------ETFTNFHNNPGNIHGALSSYIFSIKQ 265 (781)
T ss_dssp SEEEEEECTTCCEEEEETT-EEEEEETTT-------------------------TEEEC-----------CCCCEEEEEE
T ss_pred ceeEEEEcCCCCEEEEeCC-cHheECCCC-------------------------CcEEEEEcCCCccccccCceEEEEEE
Confidence 46777777776 5555554 899999876 333222111 1 3467999998
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCCCeeEEEec--------------CCCCceEEEEec-CCEEEEEecCCeEEEEEcCCCC
Q psy4876 344 IQEGYMLGVGTSLGTVQLWDVSAKKKCRTMD--------------GHDVRVGALAWN-TYILSSGSRCGNIVHHDVRSRD 408 (609)
Q Consensus 344 spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~--------------~h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~~~ 408 (609)
.++|.+ .+|+..+-|.++|..++....... .....|.++..+ ...|..|+.++-|..++.....
T Consensus 266 d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~ 344 (781)
T 3v9f_A 266 LKDNKL-WIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPT 344 (781)
T ss_dssp CTTSEE-EEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCS
T ss_pred CCCCCE-EEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCc
Confidence 888764 457764558889987765332211 134568888885 3567788878889999887643
Q ss_pred eeEEEEc----------cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceE-eecCCcccEEEEEEcCC
Q psy4876 409 HKVALLQ----------NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIH-SLSRHQAAVKAIAWCPW 477 (609)
Q Consensus 409 ~~~~~~~----------~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~ 477 (609)
...+. .....|.++...++|.+. .|+.++-|.+||..++.. .... ........|.++...++
T Consensus 345 --~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~----~~~~~~~~~~~~~v~~i~~d~~ 417 (781)
T 3v9f_A 345 --FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVA----IYNKENRELLSNSVLCSLKDSE 417 (781)
T ss_dssp --CEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEE----ECC-----CCCSBEEEEEECTT
T ss_pred --ceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeE----EEccCCCCCCCcceEEEEECCC
Confidence 22221 123569999998888744 566566688999765411 0000 00123467899988877
Q ss_pred CCcEEEEEeccCCCeEEEEECCCCceeEEEc---CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC-
Q psy4876 478 SPNVLASGGGTADRHIYFWNVSSGACLDSID---TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH- 553 (609)
Q Consensus 478 ~~~llasggGs~Dg~I~iwd~~t~~~~~~~~---~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h- 553 (609)
+ .+.+ | +.++-|..+|..+++...... ....|.++...+++...+. + . +.|.+||..+++........
T Consensus 418 g-~lWi-g--t~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t--~-~Gl~~~~~~~~~~~~~~~~~~ 489 (781)
T 3v9f_A 418 G-NLWF-G--TYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-T--H-AGVFVIDLASKKVIHHYDTSN 489 (781)
T ss_dssp S-CEEE-E--ETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-E--T-TEEEEEESSSSSCCEEECTTT
T ss_pred C-CEEE-E--eccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-E--C-CceEEEeCCCCeEEecccCcc
Confidence 6 4554 2 356779999988775433221 2347889988888775553 2 3 67999998766543322222
Q ss_pred ----CCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 554 ----SARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 554 ----~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
...|.++...++|.+.+ |+.++-|..|+..+.
T Consensus 490 ~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQ 525 (781)
T ss_dssp SSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCC
T ss_pred cccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCC
Confidence 36799999998887555 444444777776554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=0.0015 Score=66.20 Aligned_cols=227 Identities=10% Similarity=-0.043 Sum_probs=142.5
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--C-CEEEEEecCCeEEEEEcCCC---CeeEEEEccCCCCeE
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--T-YILSSGSRCGNIVHHDVRSR---DHKVALLQNHTQEVC 422 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~-~~L~sgs~dg~I~iwd~~~~---~~~~~~~~~h~~~V~ 422 (609)
+|+.+.. ..|+..|+...+....+. .......++|+ + .++++-...+.|..+++... ......+...-....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 4555544 569999998876655554 34567889995 3 45555556789999998751 112222332334568
Q ss_pred EEEEccCCCEE-EEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 423 GLKWSPDGRYL-ASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 423 ~l~~spdg~~l-asgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
++++.+.+..| ++-...+.|.++++... .....+.........++++|.+..++.+..+ ..+.|..+++..
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~------~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG- 152 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGV------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG- 152 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSS------SEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS-
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCC------ceEEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCC-
Confidence 89998755444 45456789999998743 1212222233567899999987778877531 237899998863
Q ss_pred ceeEEE-c-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC--CCCCEEEEEEeCCCCEEEEEECCCC
Q psy4876 502 ACLDSI-D-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG--HSARVLNLAMSPDETTVLSAGADET 577 (609)
Q Consensus 502 ~~~~~~-~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~L~s~s~Dg~ 577 (609)
.....+ . .-.....+++++++..|+.+- ...+.|..+|+........+.. .......|++. .+.++++....+.
T Consensus 153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D-~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~ 230 (316)
T 1ijq_A 153 VDIYSLVTENIQWPNGITLDLLSGRLYWVD-SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA 230 (316)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred CCeEEEEECCCCCceEEEEeccCCEEEEEE-CCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCe
Confidence 333333 2 234688999999988888764 3678999999874332222222 23446788885 3455555556678
Q ss_pred EEEEEcCCCc
Q psy4876 578 LRLWKIFEKV 587 (609)
Q Consensus 578 I~iWdl~~~~ 587 (609)
|..++..++.
T Consensus 231 V~~~~~~~g~ 240 (316)
T 1ijq_A 231 IFSANRLTGS 240 (316)
T ss_dssp EEEEETTTCC
T ss_pred EEEEeCCCCc
Confidence 8888876554
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00071 Score=74.77 Aligned_cols=80 Identities=11% Similarity=0.019 Sum_probs=55.6
Q ss_pred CCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCE-EEEEEeCCCC
Q psy4876 489 ADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARV-LNLAMSPDET 567 (609)
Q Consensus 489 ~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~ 567 (609)
.++.|.-||+.+|+.+-.......+..-.....+..+++ |..|+.|+.||..+++.+..+....+.+ .-+.|..+|+
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~--g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFT--GTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEE--ECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence 368899999999999877765443332222334666776 5589999999999999999887543321 2256667887
Q ss_pred EEE
Q psy4876 568 TVL 570 (609)
Q Consensus 568 ~L~ 570 (609)
..+
T Consensus 542 qYv 544 (582)
T 1flg_A 542 QYL 544 (582)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00044 Score=69.57 Aligned_cols=221 Identities=11% Similarity=0.046 Sum_probs=132.3
Q ss_pred eeEEEEEecCCC-eEEEE-cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 270 YYLNLIDWSHFN-VLAVA-LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 270 ~~v~~l~wsp~~-lla~s-~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
.+...++|++++ ++.+. .++.|+.||... . ...... ....+..+++.++|
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-------------------------~-~~~~~~--~~~~p~gia~~~dG 83 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-------------------------N-QQIHAT--VEGKVSGLAFTSNG 83 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-------------------------C-EEEEEE--CSSEEEEEEECTTS
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-------------------------c-eEEEEe--CCCCceeEEEcCCC
Confidence 346779999986 44444 568899998765 2 222222 23568899999999
Q ss_pred CEEEEEeCC-C-eEEEEeCCCCeeEEEecC-CCCceEEEE-ecCCEEEEEe-cCCeEEEEEcCCCCeeEEEEc-------
Q psy4876 348 YMLGVGTSL-G-TVQLWDVSAKKKCRTMDG-HDVRVGALA-WNTYILSSGS-RCGNIVHHDVRSRDHKVALLQ------- 415 (609)
Q Consensus 348 ~~Lasgs~d-g-~I~iwd~~~~~~~~~l~~-h~~~V~~l~-~~~~~L~sgs-~dg~I~iwd~~~~~~~~~~~~------- 415 (609)
+++++.... + .|..+|..+++....... .......++ |.+..++... .+|.|+++|...+...+....
T Consensus 84 ~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~ 163 (306)
T 2p4o_A 84 DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSN 163 (306)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred cEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccccc
Confidence 866654432 2 477778777765433221 122223333 4444444444 588999999875421222111
Q ss_pred --cCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCC-CCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 416 --NHTQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVP-GQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 416 --~h~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~-~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
..-.....| ++++++|+++. ..+.|.+||+.. +.. .....+.. ......++++++| +++++.. ..+
T Consensus 164 ~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~----~~~~~~~~-~~~P~gi~vd~dG-~l~va~~--~~~ 233 (306)
T 2p4o_A 164 SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP----GEPEIFVE-QTNIDDFAFDVEG-NLYGATH--IYN 233 (306)
T ss_dssp TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB----CCCEEEEE-SCCCSSEEEBTTC-CEEEECB--TTC
T ss_pred ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC----CccEEEec-cCCCCCeEECCCC-CEEEEeC--CCC
Confidence 111245566 78887665554 567899999875 311 11111111 1234678899988 5666542 468
Q ss_pred eEEEEECCCCceeE--EEcCC-CCeEEEEEc---CCCCeEEEEE
Q psy4876 492 HIYFWNVSSGACLD--SIDTK-SQVCALLWN---SDYKELVSAH 529 (609)
Q Consensus 492 ~I~iwd~~t~~~~~--~~~~~-~~v~sl~~s---~~g~~l~~~s 529 (609)
.|.++|.. ++... .+... ....+++|. ++++.|+++.
T Consensus 234 ~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 234 SVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp CEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred eEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence 89999975 66533 33333 578999998 8888888765
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00024 Score=78.61 Aligned_cols=215 Identities=12% Similarity=0.032 Sum_probs=129.4
Q ss_pred CEEEEEe------CCCeEEEEeCCCCeeEEEecCCCCc-------------------------------------e-EEE
Q psy4876 348 YMLGVGT------SLGTVQLWDVSAKKKCRTMDGHDVR-------------------------------------V-GAL 383 (609)
Q Consensus 348 ~~Lasgs------~dg~I~iwd~~~~~~~~~l~~h~~~-------------------------------------V-~~l 383 (609)
..|++++ .+|.|+.+|..+|+.+-.+...... + ..+
T Consensus 167 g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~ 246 (599)
T 1w6s_A 167 DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWY 246 (599)
T ss_dssp TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCC
T ss_pred CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccce
Confidence 3555555 3799999999999988766532211 0 012
Q ss_pred Ee--cCCEEEEEecC----------------CeEEEEEcCCCCeeEEEEccCC----------CCeEEEEEc-cCC---C
Q psy4876 384 AW--NTYILSSGSRC----------------GNIVHHDVRSRDHKVALLQNHT----------QEVCGLKWS-PDG---R 431 (609)
Q Consensus 384 ~~--~~~~L~sgs~d----------------g~I~iwd~~~~~~~~~~~~~h~----------~~V~~l~~s-pdg---~ 431 (609)
++ ...+++.+..+ +.|..+|.++++ .+..++... ..+. +... .+| .
T Consensus 247 a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~-~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~ 324 (599)
T 1w6s_A 247 AYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE-AKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARK 324 (599)
T ss_dssp EEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC-EEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEE
T ss_pred eEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc-eeeEeecCCCccccccCCCccEE-EeccccCCcEEE
Confidence 33 34566766654 479999999985 555544321 1221 2232 467 4
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-------------CcccE--------------------------EEE
Q psy4876 432 YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-------------HQAAV--------------------------KAI 472 (609)
Q Consensus 432 ~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-------------h~~~V--------------------------~~l 472 (609)
.++.++.+|.++++|.++++. +..... ...++ ..+
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~------lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~ 398 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGAL------VSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHD 398 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCE------EEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBC
T ss_pred EEEEECCCcEEEEEECCCCCE------eecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCc
Confidence 677888999999999999843 222210 00011 134
Q ss_pred EEcCCCCcEEEEE----------------------e--------cc------CCCeEEEEECCCCceeEEEcCCCCeEEE
Q psy4876 473 AWCPWSPNVLASG----------------------G--------GT------ADRHIYFWNVSSGACLDSIDTKSQVCAL 516 (609)
Q Consensus 473 ~~sp~~~~llasg----------------------g--------Gs------~Dg~I~iwd~~t~~~~~~~~~~~~v~sl 516 (609)
+++|+...+++.. + .. .++.|.-||+.+|+.+-..........-
T Consensus 399 a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g 478 (599)
T 1w6s_A 399 SYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG 478 (599)
T ss_dssp EEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSB
T ss_pred cCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCc
Confidence 5666554333311 0 01 3588999999999988877544332222
Q ss_pred EEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCC-EEEEEEeCCCC-EEEEE
Q psy4876 517 LWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSAR-VLNLAMSPDET-TVLSA 572 (609)
Q Consensus 517 ~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~-~L~s~ 572 (609)
.....+..+++ +..|+.|+.||..+++.+..++..... ..-+.+..+|+ +|++.
T Consensus 479 ~~~tagg~vf~--gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 479 TMATAGDLVFY--GTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp CEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred ceEecCCEEEE--ECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEE
Confidence 23335666666 558999999999999999888643321 12345566776 44443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.0004 Score=73.81 Aligned_cols=236 Identities=10% Similarity=0.036 Sum_probs=139.2
Q ss_pred CCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEec-CC----eEEEEEcCCC
Q psy4876 336 ENVCSVAWIQ-EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSR-CG----NIVHHDVRSR 407 (609)
Q Consensus 336 ~~V~~v~~sp-dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~-dg----~I~iwd~~~~ 407 (609)
.....|+|+| ++..|+++...+.|+.+|+..+....... .......|+|+ ++.|+.+.. ++ .+.+++....
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG 215 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence 3567899998 45566666655889999998766544433 55667888884 675555543 22 3444443322
Q ss_pred CeeEEEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 408 DHKVALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 408 ~~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
......+.. .....+++++| +|.++++-..++.|+.++...+.. ..+.... .......|+|+|++..++++.
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~----~~~~~~~-~~~~P~gia~~pdG~~lyv~d- 288 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET----TPLFTIQ-DSGWEFHIQFHPSGNYAYIVV- 288 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE----EEEEECS-SSSCCEEEEECTTSSEEEEEE-
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE----EEEEEcC-CCCcceeEEEcCCCCEEEEEE-
Confidence 111122221 23457789999 777666666778999999886511 0122221 223467899999997677765
Q ss_pred ccCCCeEEEEECCC--Cce--eEEEcCC----------------CCeE-EEEEc--------CCCCeEEEEEecCCCeEE
Q psy4876 487 GTADRHIYFWNVSS--GAC--LDSIDTK----------------SQVC-ALLWN--------SDYKELVSAHGFAQNQLI 537 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t--~~~--~~~~~~~----------------~~v~-sl~~s--------~~g~~l~~~sG~~dg~I~ 537 (609)
...+.|..++... +.. +..+... .... .++.. ++|..+++ -...+.|+
T Consensus 289 -~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyva--D~~n~~I~ 365 (430)
T 3tc9_A 289 -VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFC--DRENHCIR 365 (430)
T ss_dssp -TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEE--EGGGTEEE
T ss_pred -CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEE--ECCCcEEE
Confidence 3688999987653 221 1122110 1123 45543 23443333 44578899
Q ss_pred EEECCCCceEEEEeCC------------------CCCEEEEEEeCC-CCEEEEEECCCCEEEEEcC
Q psy4876 538 IWKYPSLVKVAELHGH------------------SARVLNLAMSPD-ETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 538 Iwd~~~~~~~~~l~~h------------------~~~V~~l~~spd-g~~L~s~s~Dg~I~iWdl~ 584 (609)
.++ +++... .+.+. -.....|+++++ +.++++-...+.|+.++++
T Consensus 366 ~i~-~~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 366 ILT-PQGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEC-TTSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEC-CCCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 988 456433 33221 125789999995 5555555556778887764
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00013 Score=83.37 Aligned_cols=236 Identities=12% Similarity=0.023 Sum_probs=129.7
Q ss_pred eEEEEEec-CCC-eEEEEcC--C----eEEEEeCCCCCCCceEEecCCcccccccccccccc-ceeeeeeecCCCCeEEE
Q psy4876 271 YLNLIDWS-HFN-VLAVALG--G----SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNR-AIDHLMDLEGNENVCSV 341 (609)
Q Consensus 271 ~v~~l~ws-p~~-lla~s~d--g----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~h~~~V~~v 341 (609)
.+....|| ||| .||.+.+ | .|+++|+.+ + .... ..+. .....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~-------------------------g~~~l~-~~~~--~~~~~~ 226 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISD-------------------------PSQTIA-DKVS--GTNGEI 226 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTC-------------------------TTCCCC-CCEE--EECSCC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCC-------------------------CCEeCC-cccc--CceeeE
Confidence 67889999 997 5653332 2 499999988 4 3100 0111 123468
Q ss_pred EEccCCCEEEEEeCC-----CeEEEEeCCCCee--EEEec-CCCCceEEEEe--cCCEEEEEec---CCeEEEEEcCCCC
Q psy4876 342 AWIQEGYMLGVGTSL-----GTVQLWDVSAKKK--CRTMD-GHDVRVGALAW--NTYILSSGSR---CGNIVHHDVRSRD 408 (609)
Q Consensus 342 ~~spdg~~Lasgs~d-----g~I~iwd~~~~~~--~~~l~-~h~~~V~~l~~--~~~~L~sgs~---dg~I~iwd~~~~~ 408 (609)
+|+|||+.|+....+ ..|.++++.++.. ...+. .+......+.| ++++|+..+. ...|.++|+.++.
T Consensus 227 ~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~ 306 (751)
T 2xe4_A 227 VWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGN 306 (751)
T ss_dssp EECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCT
T ss_pred EEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCC
Confidence 999999888877665 3688888877642 23332 23344566778 5777766553 3468888988652
Q ss_pred eeE--EEE-ccCCCCeEEEEEccCCCEEEEEeC-C----CcEEEEeCCCCCCCCCccceEe-ecCCcc--cEEEEEEcCC
Q psy4876 409 HKV--ALL-QNHTQEVCGLKWSPDGRYLASGGN-D----NLLNIWSGVPGQHTFSTQPIHS-LSRHQA--AVKAIAWCPW 477 (609)
Q Consensus 409 ~~~--~~~-~~h~~~V~~l~~spdg~~lasgs~-D----g~I~iwd~~~~~~~~~~~~~~~-~~~h~~--~V~~l~~sp~ 477 (609)
... ..+ ........++.|+. |..|+..++ + ..|..+|+.++. . ... +..+.. .+..+.+.
T Consensus 307 ~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~-----~-~~~~li~~~~~~~l~~~~~~-- 377 (751)
T 2xe4_A 307 AHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPS-----D-WSHVLVDHSEDVFMESIAVR-- 377 (751)
T ss_dssp TCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTT-----C-CCCEEECCCSSEEEEEEEEC--
T ss_pred CCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcc-----c-ceeeEECCCCCcEEEEEEEE--
Confidence 122 333 23344555566554 555544443 3 267777776421 1 111 222333 34555554
Q ss_pred CCcEEEEEeccCCCe--EEEEEC-------CCCceeEEEcCCCC--eEEEEE----cCCCCeEEEEEecC--CCeEEEEE
Q psy4876 478 SPNVLASGGGTADRH--IYFWNV-------SSGACLDSIDTKSQ--VCALLW----NSDYKELVSAHGFA--QNQLIIWK 540 (609)
Q Consensus 478 ~~~llasggGs~Dg~--I~iwd~-------~t~~~~~~~~~~~~--v~sl~~----s~~g~~l~~~sG~~--dg~I~Iwd 540 (609)
+..++++.. .++. |.++|+ .+++.+..+..... +..+.+ +.++..++....+. -..+..+|
T Consensus 378 ~~~lv~~~~--~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d 455 (751)
T 2xe4_A 378 SNYLVVAGR--RAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVS 455 (751)
T ss_dssp SSEEEEEEE--ETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEEEE--eCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 556776653 5664 666675 34431444443332 334433 34666554432222 24677778
Q ss_pred CCCCc
Q psy4876 541 YPSLV 545 (609)
Q Consensus 541 ~~~~~ 545 (609)
+.+++
T Consensus 456 ~~~~~ 460 (751)
T 2xe4_A 456 PQDHS 460 (751)
T ss_dssp TTTCC
T ss_pred CCCCc
Confidence 77665
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00098 Score=67.70 Aligned_cols=230 Identities=12% Similarity=0.017 Sum_probs=143.0
Q ss_pred EEEEEeCCCeEEEEeCCCCe-eEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEE
Q psy4876 349 MLGVGTSLGTVQLWDVSAKK-KCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGL 424 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 424 (609)
+|+.+. ...|+.+++.... ....+......+..++|+ +.++++-...+.|..+++.........+...-....++
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 444443 3679999987653 111121122356688885 45556666678899999876532222222233456789
Q ss_pred EEccCCC-EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce
Q psy4876 425 KWSPDGR-YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC 503 (609)
Q Consensus 425 ~~spdg~-~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~ 503 (609)
++.+.+. ++++-...+.|.++++... .....+.........++++|.+..++.+..+ ..+.|..+++.....
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~------~~~~l~~~~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~~~ 157 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGS------LRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSR 157 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSC------SCEEEECSSCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEETTSCSC
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCC------cEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEcCCCCe
Confidence 9997444 4455455678999998754 2222222344567899999987777776521 357899998864332
Q ss_pred eEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEE
Q psy4876 504 LDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWK 582 (609)
Q Consensus 504 ~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWd 582 (609)
...+.. -.....+++++++..|+.+- ...+.|..+|+........+.+.......+++.. +.++++-...+.|..++
T Consensus 158 ~~~~~~~l~~Pnglavd~~~~~lY~aD-~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~ 235 (318)
T 3sov_A 158 FIIINSEIYWPNGLTLDYEEQKLYWAD-AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACN 235 (318)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCccEEEEeccCCEEEEEE-CCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEE
Confidence 222222 24678999999888888763 4678999999864433333333445567888753 34445555567888888
Q ss_pred cCCCcc
Q psy4876 583 IFEKVK 588 (609)
Q Consensus 583 l~~~~~ 588 (609)
..++..
T Consensus 236 ~~~G~~ 241 (318)
T 3sov_A 236 KYTGEG 241 (318)
T ss_dssp TTTCCS
T ss_pred CCCCCc
Confidence 866654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.0011 Score=64.94 Aligned_cols=197 Identities=11% Similarity=0.119 Sum_probs=130.7
Q ss_pred CCCeEEEEEccCCC-EEEEEeCCCeEEEEeCCCCeeEEEecC-CCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe-
Q psy4876 335 NENVCSVAWIQEGY-MLGVGTSLGTVQLWDVSAKKKCRTMDG-HDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDH- 409 (609)
Q Consensus 335 ~~~V~~v~~spdg~-~Lasgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~- 409 (609)
...+..++|+|++. ++++...++.|...|.. ++.++.+.- .......|++ ++.++++.-.++.+.++++.....
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i 104 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV 104 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee
Confidence 45799999999875 55557778899999998 788777642 2356778888 345555555678899998876542
Q ss_pred -eEEEEc------cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-------cCCcccEEEEEEc
Q psy4876 410 -KVALLQ------NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-------SRHQAAVKAIAWC 475 (609)
Q Consensus 410 -~~~~~~------~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-------~~h~~~V~~l~~s 475 (609)
.+.... .......+|+|+|+++.|.++.+.....||.+. +-. ....+..+ ..+...+.+++++
T Consensus 105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~-g~~--~~~~l~i~~~~~~~~~~~~~d~S~l~~d 181 (255)
T 3qqz_A 105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN-GLL--SSNELHISKDKALQRQFTLDDVSGAEFN 181 (255)
T ss_dssp EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE-STT--CSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc-ccc--cCCceeeecchhhccccccCCceeEEEc
Confidence 122221 134456899999998777776665444444443 100 00111111 1123457899999
Q ss_pred CCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC----------CCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 476 PWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK----------SQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 476 p~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~----------~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
|....+++.. ...+.|.++|.. |+.+..+... .+...|+|.++|+..++ + +.+.+++|.-
T Consensus 182 p~tg~lliLS--~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s--E~n~~y~f~~ 251 (255)
T 3qqz_A 182 QQKNTLLVLS--HESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S--EPNRFYRFTP 251 (255)
T ss_dssp TTTTEEEEEE--TTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E--TTTEEEEEEC
T ss_pred CCCCeEEEEE--CCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c--CCceEEEEEe
Confidence 9888888876 378999999966 5666665432 37899999999985554 3 5677777654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0083 Score=62.38 Aligned_cols=236 Identities=10% Similarity=0.111 Sum_probs=169.3
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCC
Q psy4876 340 SVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHT 418 (609)
Q Consensus 340 ~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 418 (609)
+.-.+|..+.||.=. ...++|+|+++...+..+.-.. .|.--.| +.+.|+..+. ..|+.|++.....++..+..|.
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEECS-SEEEEEESSSSCCCEEEEECCG
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEEcC-CeeEEecccCCCCchhheecch
Confidence 455678888887765 5789999999998888877544 5555666 7888877764 5799999986556777776653
Q ss_pred ----CCeEEEEEccCCCEEEEEeC-------CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC--CcEEEEE
Q psy4876 419 ----QEVCGLKWSPDGRYLASGGN-------DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS--PNVLASG 485 (609)
Q Consensus 419 ----~~V~~l~~spdg~~lasgs~-------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~~llasg 485 (609)
..|.....+++.+|++..|- .|.+.+|..+.. .-+.+.+|.+....+....+. ..+++.+
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa 219 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFA 219 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-------CEEEECCSEEEEEEEECTTCSSEEEEEEEE
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-------ccchheeeeeeeEEEecCCCCCCceEEEEE
Confidence 56778888999999876542 367899998864 556778887776555543221 2355544
Q ss_pred e-ccCCCeEEEEECCCC---ce---eEEEc-------CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe
Q psy4876 486 G-GTADRHIYFWNVSSG---AC---LDSID-------TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH 551 (609)
Q Consensus 486 g-Gs~Dg~I~iwd~~t~---~~---~~~~~-------~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~ 551 (609)
. ....++++|-++... .. .+..+ ...-..++..++.+..++..+ .-|.|++||+.++.++..-+
T Consensus 220 ~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT--K~G~i~lyDleTgt~i~~nr 297 (494)
T 1bpo_A 220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT--KYGYIHLYDLETGTCIYMNR 297 (494)
T ss_dssp ECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE--TTSEEEEEETTTCCEEEEEE
T ss_pred EecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe--cCceEEEEecccceeeeeec
Confidence 2 112478999998543 11 11111 123567889999999998876 79999999999999998887
Q ss_pred CCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 552 GHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 552 ~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
-..+.|...+-+....=++.....|.|.--.+.+..
T Consensus 298 Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 298 ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred ccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 777888777777666667777788888777776654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0027 Score=72.41 Aligned_cols=232 Identities=9% Similarity=-0.032 Sum_probs=144.0
Q ss_pred CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEE-EeCCCeE
Q psy4876 281 NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGV-GTSLGTV 359 (609)
Q Consensus 281 ~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Las-gs~dg~I 359 (609)
.+|..+....|+..++.. .....+.. ....+..|+|.+.+..|+. -...+.|
T Consensus 396 p~Ll~an~~~Ir~i~l~~-------------------------~~~~~l~~--~~~~~~gl~~d~~~~~lY~sD~~~~~I 448 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDR-------------------------SEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMI 448 (791)
T ss_dssp CEEEEECBSSEEEECTTS-------------------------CCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred cccccccccceeEeeccC-------------------------Ccceeeec--CCCceEEEeecccCCeeEEeeccceeE
Confidence 355566666777777765 33333322 3467889999986655554 4456789
Q ss_pred EEEeCCCC----eeEEEecCCCCceEEEEec--C-CEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCE
Q psy4876 360 QLWDVSAK----KKCRTMDGHDVRVGALAWN--T-YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRY 432 (609)
Q Consensus 360 ~iwd~~~~----~~~~~l~~h~~~V~~l~~~--~-~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (609)
+.+++... .....+.........|+++ + +++++-...+.|.+.++.... ....+...-....+|++.|.+.+
T Consensus 449 ~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaVDp~~g~ 527 (791)
T 3m0c_C 449 CSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGF 527 (791)
T ss_dssp EEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTE
T ss_pred EEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeCCCCCcceEEEecCCCC
Confidence 99988752 2333444333445556653 4 566666677899999998653 33333334456889999997666
Q ss_pred EEEEeC--CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC
Q psy4876 433 LASGGN--DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK 510 (609)
Q Consensus 433 lasgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~ 510 (609)
|+.... .+.|.+.++... .....+.........|++++.+..|+++- .....|..+|+........+...
T Consensus 528 LYwtD~g~~~~I~~~~~dG~------~~~~lv~~~l~~P~GLavD~~~~~LYwaD--~~~~~I~~~d~dG~~~~~v~~~~ 599 (791)
T 3m0c_C 528 MYWTDWGTPAKIKKGGLNGV------DIYSLVTENIQWPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDE 599 (791)
T ss_dssp EEEEECSSSCEEEEEETTSC------CEEEEECSSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEEECT
T ss_pred EEEecCCCCCeEEEEecCCC------ceEEEEeCCCCCceEEEEecCCCeEEEEe--CCCCcEEEEecCCCceEEEecCC
Confidence 666553 267888888754 22222333345678999998887777775 35789999999755444443332
Q ss_pred ---CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe
Q psy4876 511 ---SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH 551 (609)
Q Consensus 511 ---~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~ 551 (609)
....+|++. +..|+.+ ....+.|...+..+++.+..+.
T Consensus 600 ~~l~~P~glav~--~~~lYwt-D~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 600 KRLAHPFSLAVF--EDKVFWT-DIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TTTSSEEEEEEE--TTEEEEE-ETTTTEEEEEETTTCCCCEEEE
T ss_pred CccCCCCEEEEe--CCEEEEE-ECCCCEEEEEeCCCCcceEEee
Confidence 245566663 4456554 3467888888877776655553
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00014 Score=83.21 Aligned_cols=240 Identities=10% Similarity=0.062 Sum_probs=133.0
Q ss_pred CeEEEEEc-cCCCEEEEEeC-CC----eEEEEeCCCC-eeEE-EecCCCCceEEEEe--cCCEEEEEecC-----CeEEE
Q psy4876 337 NVCSVAWI-QEGYMLGVGTS-LG----TVQLWDVSAK-KKCR-TMDGHDVRVGALAW--NTYILSSGSRC-----GNIVH 401 (609)
Q Consensus 337 ~V~~v~~s-pdg~~Lasgs~-dg----~I~iwd~~~~-~~~~-~l~~h~~~V~~l~~--~~~~L~sgs~d-----g~I~i 401 (609)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....+.| +++.|+....+ ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99998886644 22 5999999988 6321 111 11345778 56666666554 36888
Q ss_pred EEcCCCCee-EEEEc-cCCCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCCCCCCCCccc-eEeec-CCcccEEEEEE
Q psy4876 402 HDVRSRDHK-VALLQ-NHTQEVCGLKWSPDGRYLASGGN---DNLLNIWSGVPGQHTFSTQP-IHSLS-RHQAAVKAIAW 474 (609)
Q Consensus 402 wd~~~~~~~-~~~~~-~h~~~V~~l~~spdg~~lasgs~---Dg~I~iwd~~~~~~~~~~~~-~~~~~-~h~~~V~~l~~ 474 (609)
+++.+.... ...+. .......++.|+|||++|+..+. ...|+++|+.++.. .. +..+. ........+.|
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~----~~~~~~l~~~~~~~~~s~~~ 327 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA----HNTLEIVRPREKGVRYDVQM 327 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT----CCCEEESSCCCTTCCEEEEE
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC----CceeEEeecCCCCceEEEee
Confidence 888775321 22322 23345678899999999887663 34688999886521 12 12332 23345556665
Q ss_pred cCCCCcEEEEEec--cCCCeEEEEECCCC-ceeE-EEcCCC--CeEEEEEcCCCCeEEEEEecCCCe--EEEEEC-----
Q psy4876 475 CPWSPNVLASGGG--TADRHIYFWNVSSG-ACLD-SIDTKS--QVCALLWNSDYKELVSAHGFAQNQ--LIIWKY----- 541 (609)
Q Consensus 475 sp~~~~llasggG--s~Dg~I~iwd~~t~-~~~~-~~~~~~--~v~sl~~s~~g~~l~~~sG~~dg~--I~Iwd~----- 541 (609)
+. +..+++.... .....|..+|+.++ .... .+.... .+..+.+ .+..|+... ..++. |.++++
T Consensus 328 ~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~-~~~g~~~l~~~dl~~~~~ 403 (751)
T 2xe4_A 328 HG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAG-RRAGLTRIWTMMADSQDG 403 (751)
T ss_dssp ET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEE-EETTEEEEEEEECCTTTS
T ss_pred ee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEE-EeCCEEEEEEEecccccc
Confidence 54 5556655421 12347888888753 3222 333333 3444554 455665543 35664 556665
Q ss_pred --CCCceEEEEeCC-CCCEEEEEE----eCCCC-EEEEEECC---CCEEEEEcCCCc
Q psy4876 542 --PSLVKVAELHGH-SARVLNLAM----SPDET-TVLSAGAD---ETLRLWKIFEKV 587 (609)
Q Consensus 542 --~~~~~~~~l~~h-~~~V~~l~~----spdg~-~L~s~s~D---g~I~iWdl~~~~ 587 (609)
..+..+..+... ...+..+.+ ++++. ++++.+.. ..|..+|+.+++
T Consensus 404 ~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 404 VFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp CCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred cccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 333313333211 122334433 34554 44554443 356667766544
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0035 Score=65.74 Aligned_cols=230 Identities=10% Similarity=-0.050 Sum_probs=146.0
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCC---eeEEEEccCCCCe
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRD---HKVALLQNHTQEV 421 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V 421 (609)
.+|+.+.. ..|+..++........+. ....+..|+|+ +.++++-...+.|..+++.... .....+.......
T Consensus 84 ~~ll~~~~-~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEET-TEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEecc-ceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 45555544 689999998765444443 45678889995 3445555567889999887521 1233333344567
Q ss_pred EEEEEccC-CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 422 CGLKWSPD-GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 422 ~~l~~spd-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
.+|++.+. ++++++-...+.|.+.++... .....+.........|+++|.+..|+.+-.| ..+.|...++..
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~------~~~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG 234 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGV------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG 234 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTC------SEEEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETTS
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCC------ceEEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCCC
Confidence 89999984 444555556788999998754 2222233334457899999987778777532 347899999875
Q ss_pred CceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC--CCCCEEEEEEeCCCCEEEEEECCCC
Q psy4876 501 GACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG--HSARVLNLAMSPDETTVLSAGADET 577 (609)
Q Consensus 501 ~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~L~s~s~Dg~ 577 (609)
......+... .....|++++++..|+.+- ...+.|..+|+........+.. .......|++. .+.++++....+.
T Consensus 235 ~~~~~~~~~~l~~P~glavd~~~~~lY~aD-~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~ 312 (400)
T 3p5b_L 235 VDIYSLVTENIQWPNGITLDLLSGRLYWVD-SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA 312 (400)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCS
T ss_pred CccEEEEECCCCceEEEEEEeCCCEEEEEE-CCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCe
Confidence 4433333333 5789999999988888864 3678999999865443333332 23445677773 3344555556688
Q ss_pred EEEEEcCCCcc
Q psy4876 578 LRLWKIFEKVK 588 (609)
Q Consensus 578 I~iWdl~~~~~ 588 (609)
|..++..++..
T Consensus 313 V~~~~~~~G~~ 323 (400)
T 3p5b_L 313 IFSANRLTGSD 323 (400)
T ss_dssp EEEEESSSCCC
T ss_pred EEEEEcCCCCc
Confidence 88888665543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0011 Score=70.40 Aligned_cols=236 Identities=9% Similarity=0.019 Sum_probs=140.1
Q ss_pred CeEEEEEccC--CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecC---C-eEEEEEcCCCC
Q psy4876 337 NVCSVAWIQE--GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRC---G-NIVHHDVRSRD 408 (609)
Q Consensus 337 ~V~~v~~spd--g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~d---g-~I~iwd~~~~~ 408 (609)
....|+|+|+ +..|+++...+.|+.+|..++..... .........+++ +++++++.... . .+...+.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568999985 44555565548899999987765544 335556788888 46744443311 1 23333332221
Q ss_pred eeEEEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEec
Q psy4876 409 HKVALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 409 ~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggG 487 (609)
.....+. .......++++| +|.++++-..++.|+.+|..++... ..+.... ....-..++|+|++..|+++-
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~---~~~~~~~-~~~~~~~ia~dpdG~~LYvad-- 291 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT---EEEVMMD-TKGSNFHIVWHPTGDWAYIIY-- 291 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE---EEEEECS-CCSSCEEEEECTTSSEEEEEE--
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE---EEEeccC-CCCCcccEEEeCCCCEEEEEe--
Confidence 1111222 234456789999 7776666656788999998866210 0111111 122234799999997677775
Q ss_pred cCCCeEEEEECC--CCce--eEEEcC----------------CCCeEEEEE---------cCCCCeEEEEEecCCCeEEE
Q psy4876 488 TADRHIYFWNVS--SGAC--LDSIDT----------------KSQVCALLW---------NSDYKELVSAHGFAQNQLII 538 (609)
Q Consensus 488 s~Dg~I~iwd~~--t~~~--~~~~~~----------------~~~v~sl~~---------s~~g~~l~~~sG~~dg~I~I 538 (609)
...+.|+.+++. ++.. ...+.. -.....+++ ..+|..+++ ....+.|+.
T Consensus 292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyva--D~~n~~I~~ 369 (433)
T 4hw6_A 292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFC--DRDSHTVRV 369 (433)
T ss_dssp TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEE--ETTTTEEEE
T ss_pred CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEE--ECCCCEEEE
Confidence 367899998865 3322 112111 123667898 566655554 446788999
Q ss_pred EECCCCceEEEEeCC------------------CCCEEEEEEe-CCCCEEEEEECCCCEEEEEcC
Q psy4876 539 WKYPSLVKVAELHGH------------------SARVLNLAMS-PDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 539 wd~~~~~~~~~l~~h------------------~~~V~~l~~s-pdg~~L~s~s~Dg~I~iWdl~ 584 (609)
++. ++. +..+.+. -.....|+++ ++|.++++-...+.|+.++++
T Consensus 370 ~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 370 LTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 984 553 3333322 1236789999 566666665667788888764
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0049 Score=68.59 Aligned_cols=233 Identities=8% Similarity=-0.056 Sum_probs=148.3
Q ss_pred CCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEE-eCCCe
Q psy4876 280 FNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVG-TSLGT 358 (609)
Q Consensus 280 ~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasg-s~dg~ 358 (609)
..+|..+..+.|+..++.+ .....+..+..-..+..|+|++.+..|+.+ ..++.
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~-------------------------~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~ 60 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLET-------------------------NNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKT 60 (628)
T ss_dssp CCEEEEEETTEEEEEESSC-------------------------TTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CcEEEEEeCCcEEEEECCC-------------------------CCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCe
Confidence 3456667888899999876 333333333333568899999977666554 45788
Q ss_pred EEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEE
Q psy4876 359 VQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLAS 435 (609)
Q Consensus 359 I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 435 (609)
|..+++........+.........|+++ ++++++-...+.|.+.++.... ....+...-....+|++.|...+|+.
T Consensus 61 I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~iavdp~~G~lY~ 139 (628)
T 4a0p_A 61 ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLVWKDLDSPRALALDPAEGFMYW 139 (628)
T ss_dssp EEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEECSSCCCEEEEEEETTTTEEEE
T ss_pred EEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEEeCCCCCcccEEEccCCCeEEE
Confidence 9999987654444444333345556553 4555666667889999987653 22223234456789999996556655
Q ss_pred EeC--CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCe
Q psy4876 436 GGN--DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQV 513 (609)
Q Consensus 436 gs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v 513 (609)
... .+.|...++.... ...+...-.....|++++++..|+.+- ...+.|..+|+...............
T Consensus 140 tD~g~~~~I~r~~~dG~~-------~~~l~~~~~~P~GlalD~~~~~LY~aD--~~~~~I~~~d~dG~~~~v~~~~l~~P 210 (628)
T 4a0p_A 140 TEWGGKPKIDRAAMDGSE-------RTTLVPNVGRANGLTIDYAKRRLYWTD--LDTNLIESSNMLGLNREVIADDLPHP 210 (628)
T ss_dssp EECSSSCEEEEEETTSCS-------CEEEECSCSSEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEEECCSCE
T ss_pred eCCCCCCEEEEEeCCCCc-------eEEEECCCCCcceEEEccccCEEEEEE--CCCCEEEEEcCCCCceEEeeccCCCc
Confidence 542 4678888887541 222223445678999999887787775 36789999999754432222233456
Q ss_pred EEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEE
Q psy4876 514 CALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL 550 (609)
Q Consensus 514 ~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l 550 (609)
..+++.. ..++.+ ....+.|...|..+++....+
T Consensus 211 ~glav~~--~~ly~t-D~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 211 FGLTQYQ--DYIYWT-DWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EEEEEET--TEEEEE-ETTTTEEEEEETTTCCSCEEE
T ss_pred eEEEEEC--CEEEEe-cCCCCEEEEEECCCCCceEEE
Confidence 6777765 355544 346788999987766544444
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0045 Score=60.53 Aligned_cols=203 Identities=12% Similarity=0.163 Sum_probs=130.9
Q ss_pred EEecCCCCceEEEEec--CC-EEEEEecCCeEEEEEcCCCCeeEEEEc-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q psy4876 371 RTMDGHDVRVGALAWN--TY-ILSSGSRCGNIVHHDVRSRDHKVALLQ-NHTQEVCGLKWSPDGRYLASGGNDNLLNIWS 446 (609)
Q Consensus 371 ~~l~~h~~~V~~l~~~--~~-~L~sgs~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd 446 (609)
+.+.+-...+..++|+ ++ ++++...++.|...|.. + ..+..+. .-....-+|++.+++.++++.-.++.+.+++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g-~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G-DLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-C-CEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C-CEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 3556666789999996 34 55567788899999998 4 3555543 2235688999999988767666678899998
Q ss_pred CCCCCCCCCccceEee------cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEEC-CCCceeEEEc--------CCC
Q psy4876 447 GVPGQHTFSTQPIHSL------SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV-SSGACLDSID--------TKS 511 (609)
Q Consensus 447 ~~~~~~~~~~~~~~~~------~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~-~t~~~~~~~~--------~~~ 511 (609)
+...... ..+... .........|+|+|.+..++++.. ..-..|+.|+- .....+..+. .-.
T Consensus 98 v~~~~~i---~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E-~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~ 173 (255)
T 3qqz_A 98 LTPNSEV---KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE-KNPIEVYKVNGLLSSNELHISKDKALQRQFTLD 173 (255)
T ss_dssp ECTTCCE---EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE-SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred cCCCCee---eeeeeeccccccccccCCcceEEEeCCCCEEEEEEC-cCCceEEEEcccccCCceeeecchhhccccccC
Confidence 8765210 111111 123455789999999888887763 12225666661 1111222221 113
Q ss_pred CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCC---------CCEEEEEEeCCCCEEEEEECCCCEEEEE
Q psy4876 512 QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHS---------ARVLNLAMSPDETTVLSAGADETLRLWK 582 (609)
Q Consensus 512 ~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~---------~~V~~l~~spdg~~L~s~s~Dg~I~iWd 582 (609)
.+.+++++|....+++.+. ....|.++|.. ++.+..+.-.. ..-..|+|.++|++. .+++.+.++.+.
T Consensus 174 d~S~l~~dp~tg~lliLS~-~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly-IvsE~n~~y~f~ 250 (255)
T 3qqz_A 174 DVSGAEFNQQKNTLLVLSH-ESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY-IVSEPNRFYRFT 250 (255)
T ss_dssp CCCEEEEETTTTEEEEEET-TTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE-EEETTTEEEEEE
T ss_pred CceeEEEcCCCCeEEEEEC-CCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEE-EEcCCceEEEEE
Confidence 6789999999888877753 77889999965 55555443221 256899999999844 446766544443
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00036 Score=78.35 Aligned_cols=254 Identities=14% Similarity=0.091 Sum_probs=139.3
Q ss_pred cceeeeeeecCCCCeEEEEEcc-CCCEEEEEeCCC-----------eEEEEeCCCCee--EEEec-CCCCceEEEEe--c
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQ-EGYMLGVGTSLG-----------TVQLWDVSAKKK--CRTMD-GHDVRVGALAW--N 386 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~sp-dg~~Lasgs~dg-----------~I~iwd~~~~~~--~~~l~-~h~~~V~~l~~--~ 386 (609)
+....+..+.. .-.++++.+ +|+.++.|+.+. .+.+||..+++. +..+. .+.....++++ +
T Consensus 176 ~~W~~~~~~P~--~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~ 253 (656)
T 1k3i_A 176 GRWGPTIDLPI--VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN 253 (656)
T ss_dssp CEEEEEEECSS--CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT
T ss_pred CeeeeeccCCC--CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCC
Confidence 44444444432 223567777 888888887543 588999987652 33332 23333333443 7
Q ss_pred CCEEEEEec-CCeEEEEEcCCCCeeEEEEccC-CCCeEEEEEccCCCEEEEEe-CC-----CcEEEEeCCCCCCCCCc--
Q psy4876 387 TYILSSGSR-CGNIVHHDVRSRDHKVALLQNH-TQEVCGLKWSPDGRYLASGG-ND-----NLLNIWSGVPGQHTFST-- 456 (609)
Q Consensus 387 ~~~L~sgs~-dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg~~lasgs-~D-----g~I~iwd~~~~~~~~~~-- 456 (609)
+.+++.|+. +..+.+||..+.. -...-..+ ...-.+++..++|++++.|+ .+ ..+.+||..+..-....
T Consensus 254 g~lyv~GG~~~~~v~~yd~~t~~-W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~ 332 (656)
T 1k3i_A 254 GQIVVTGGNDAKKTSLYDSSSDS-WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNA 332 (656)
T ss_dssp SCEEEECSSSTTCEEEEEGGGTE-EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTS
T ss_pred CCEEEeCCCCCCceEEecCcCCc-eeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCc
Confidence 899999884 4589999998753 11111111 12223556677999999998 34 56999999865210000
Q ss_pred --cceEeecCCcccEEEEEEcCCCCcEEEEEecc-------CCCeEEEEECCCCceeEEEcCC----------CCeEEEE
Q psy4876 457 --QPIHSLSRHQAAVKAIAWCPWSPNVLASGGGT-------ADRHIYFWNVSSGACLDSIDTK----------SQVCALL 517 (609)
Q Consensus 457 --~~~~~~~~h~~~V~~l~~sp~~~~llasggGs-------~Dg~I~iwd~~t~~~~~~~~~~----------~~v~sl~ 517 (609)
.++..- .+. ..+..++ .+++.|+.. ....+..||..+.......... ..-.++.
T Consensus 333 ~~~p~~~~-~~~-----~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 333 KVNPMLTA-DKQ-----GLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp CSGGGCCC-CTT-----GGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred cccccccc-ccc-----ceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 000000 000 0111222 444444310 2356788998877644332211 1234555
Q ss_pred EcCCCCeEEEEEecCC-------C---eEEEEECCCCceEEEE--eCCCCCE-EEEEEeCCCCEEEEEECC---------
Q psy4876 518 WNSDYKELVSAHGFAQ-------N---QLIIWKYPSLVKVAEL--HGHSARV-LNLAMSPDETTVLSAGAD--------- 575 (609)
Q Consensus 518 ~s~~g~~l~~~sG~~d-------g---~I~Iwd~~~~~~~~~l--~~h~~~V-~~l~~spdg~~L~s~s~D--------- 575 (609)
|...+..|+++.|... . .|.+||..+..-.... ..+..+. .+++..|+|++++.||.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 5554445555444211 1 6788887765543332 2233333 345667899999999865
Q ss_pred --CCEEEEEcCCCc
Q psy4876 576 --ETLRLWKIFEKV 587 (609)
Q Consensus 576 --g~I~iWdl~~~~ 587 (609)
..+.+||..+..
T Consensus 486 ~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 486 PVFTPEIYVPEQDT 499 (656)
T ss_dssp BCCCCEEEEGGGTE
T ss_pred cccceEEEcCCCCc
Confidence 468899986644
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0048 Score=66.13 Aligned_cols=246 Identities=10% Similarity=0.045 Sum_probs=143.1
Q ss_pred CeEEEEEcc-CCCEEEEEeC-CCeEEEEeCCCCeeEEEecCC---CCceEEEEe-------c--CCEEEEEecCC-----
Q psy4876 337 NVCSVAWIQ-EGYMLGVGTS-LGTVQLWDVSAKKKCRTMDGH---DVRVGALAW-------N--TYILSSGSRCG----- 397 (609)
Q Consensus 337 ~V~~v~~sp-dg~~Lasgs~-dg~I~iwd~~~~~~~~~l~~h---~~~V~~l~~-------~--~~~L~sgs~dg----- 397 (609)
....|+|+| ++..|+++.. .+.|++.|+.++.....+... ......|+| + +..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 567899998 3544554444 467999999887766555432 235788999 4 66566665543
Q ss_pred --eEEEEEcCCCCeeE-----EEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCC-------CCCCCCC-------
Q psy4876 398 --NIVHHDVRSRDHKV-----ALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGV-------PGQHTFS------- 455 (609)
Q Consensus 398 --~I~iwd~~~~~~~~-----~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~-------~~~~~~~------- 455 (609)
.|.+++........ ..+... ....+++++| ++.++++-..++.|+.+|+. ++.....
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 26666533311110 122211 2345788999 45555566677889999987 4532000
Q ss_pred -ccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC--CCce--eEEEcCC----------------CCeE
Q psy4876 456 -TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS--SGAC--LDSIDTK----------------SQVC 514 (609)
Q Consensus 456 -~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~--t~~~--~~~~~~~----------------~~v~ 514 (609)
...+... ........|+|+|++..++++- +....|+.++.. ++.. ...+... ....
T Consensus 299 ~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD--~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 299 TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGV--INNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp TEEEEEEC-SSSSCCEEEEECTTSSEEEEEE--TTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred ccceeEec-CCCCCceEEEEcCCCCEEEEEe--CCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 0112222 2234457999999997666665 467889986543 3322 0122110 1234
Q ss_pred -EEEEc-------CCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC------------------------CCCEEEEEE
Q psy4876 515 -ALLWN-------SDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH------------------------SARVLNLAM 562 (609)
Q Consensus 515 -sl~~s-------~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h------------------------~~~V~~l~~ 562 (609)
.++.. .++.++++ -...+.|+.++ +++. +.++.+. -.....|++
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVa--D~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav 451 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFV--DRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEE--EGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred EEEEEccccccccCCCeEEEE--ECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence 44444 34444443 44688999998 5664 4444321 123678999
Q ss_pred eCC-CCEEEEEECCCCEEEEEcCCCccch
Q psy4876 563 SPD-ETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 563 spd-g~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
+++ |.++++=.....||.+++.......
T Consensus 452 d~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 452 DDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred ECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 997 6666666667899999998766543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0038 Score=66.16 Aligned_cols=233 Identities=8% Similarity=0.049 Sum_probs=129.6
Q ss_pred EEEEecCC--C-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCE
Q psy4876 273 NLIDWSHF--N-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYM 349 (609)
Q Consensus 273 ~~l~wsp~--~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~ 349 (609)
..|+|+|. + ++++...+.|+.+|... +.+..+.. .......|+|+++|++
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~-------------------------~~v~~~~~--~~~~P~~ia~d~~G~~ 192 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEK-------------------------EYVSTVYS--GLSKVRTICWTHEADS 192 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTT-------------------------TEEEEEEC--CCSCEEEEEECTTSSE
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCC-------------------------CEEEEEec--CCCCcceEEEeCCCCE
Confidence 45888872 4 55555558888898876 44444332 4466889999999996
Q ss_pred EEEEeCC-C----eEEEEeCCCCeeE--EEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 350 LGVGTSL-G----TVQLWDVSAKKKC--RTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 350 Lasgs~d-g----~I~iwd~~~~~~~--~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
|+++... + .+.+++. .+... ..+.. ......++++ +.++++-..++.|..++................
T Consensus 193 lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 193 MIITNDQNNNDRPNNYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EEEEeCCCCcccceEEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 6666542 1 2443443 22221 22221 2233455563 566666667789999999865321111112224
Q ss_pred CeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCCCCCCccceEeecCC---------------cccEE-EEEEcC------
Q psy4876 420 EVCGLKWSPDGRYLASG-GNDNLLNIWSGVPGQHTFSTQPIHSLSRH---------------QAAVK-AIAWCP------ 476 (609)
Q Consensus 420 ~V~~l~~spdg~~lasg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h---------------~~~V~-~l~~sp------ 476 (609)
....|+|+|+|++|+.+ ...+.|..++........ ..+..+.+. -.... .++..+
T Consensus 271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~--~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~ 348 (430)
T 3tc9_A 271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRL--TTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGS 348 (430)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE--CCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTS
T ss_pred cceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccc--cceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcccccccc
Confidence 57789999999955444 456789998765321000 001111110 11122 455532
Q ss_pred --CCCcEEEEEeccCCCeEEEEECCCCceeEEEcC---------C---------CCeEEEEEcCCCCeEEEEEecCCCeE
Q psy4876 477 --WSPNVLASGGGTADRHIYFWNVSSGACLDSIDT---------K---------SQVCALLWNSDYKELVSAHGFAQNQL 536 (609)
Q Consensus 477 --~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~---------~---------~~v~sl~~s~~g~~l~~~sG~~dg~I 536 (609)
++ .|+++- ...+.|+.++ .+|........ . .....+++++++..|+++ ....+.|
T Consensus 349 D~~g-~lyvaD--~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa-D~~n~rI 423 (430)
T 3tc9_A 349 SDEY-DFYFCD--RENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIG-DRENRRI 423 (430)
T ss_dssp SCCE-EEEEEE--GGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEE-EGGGTEE
T ss_pred CCCC-eEEEEE--CCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEE-ECCCCeE
Confidence 23 455554 2467888888 45544333221 1 147889999865555554 3356677
Q ss_pred EEEEC
Q psy4876 537 IIWKY 541 (609)
Q Consensus 537 ~Iwd~ 541 (609)
+.++.
T Consensus 424 r~i~~ 428 (430)
T 3tc9_A 424 RKIGY 428 (430)
T ss_dssp EEEEE
T ss_pred EEEcc
Confidence 77664
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.012 Score=66.99 Aligned_cols=228 Identities=11% Similarity=-0.039 Sum_probs=142.8
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCC---eeEEEEccCCCCeE
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRD---HKVALLQNHTQEVC 422 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V~ 422 (609)
+|+.+.. ..|+..++........+. ....+..|+|+ +.++++-...+.|+.+++.... .....+........
T Consensus 397 ~Ll~an~-~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEECB-SSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccccccc-cceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 4544443 568888887665544444 45667788885 3455565667889999887531 12333333445677
Q ss_pred EEEEccCCCEEE-EEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 423 GLKWSPDGRYLA-SGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 423 ~l~~spdg~~la-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
+|++.+.+..|+ +-...+.|.+.++... .....+.........|+++|.+..|+.+-.| ..+.|.+.++...
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~------~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGV------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGV 547 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSS------SEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCC------eEEEEEeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecCCC
Confidence 899998775554 4445688999998754 2222222334557899999987778877532 2378999998754
Q ss_pred ceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC--CCCEEEEEEeCCCCEEEEEE-CCCC
Q psy4876 502 ACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH--SARVLNLAMSPDETTVLSAG-ADET 577 (609)
Q Consensus 502 ~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h--~~~V~~l~~spdg~~L~s~s-~Dg~ 577 (609)
.....+... .....|++++.+..|+.+- ...+.|..+++........+... -.....|++. +..|+.+. ..+.
T Consensus 548 ~~~~lv~~~l~~P~GLavD~~~~~LYwaD-~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~ 624 (791)
T 3m0c_C 548 DIYSLVTENIQWPNGITLDLLSGRLYWVD-SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEA 624 (791)
T ss_dssp CEEEEECSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred ceEEEEeCCCCCceEEEEecCCCeEEEEe-CCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCE
Confidence 443333333 4789999999888888864 35778999998655444444332 2344566664 34555554 4567
Q ss_pred EEEEEcCCCcc
Q psy4876 578 LRLWKIFEKVK 588 (609)
Q Consensus 578 I~iWdl~~~~~ 588 (609)
|...+..++..
T Consensus 625 I~~~dk~tG~~ 635 (791)
T 3m0c_C 625 IFSANRLTGSD 635 (791)
T ss_dssp EEEEETTTCCC
T ss_pred EEEEeCCCCcc
Confidence 77777665543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0057 Score=64.85 Aligned_cols=234 Identities=6% Similarity=-0.040 Sum_probs=127.1
Q ss_pred EEEEEecCC---C-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 272 LNLIDWSHF---N-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 272 v~~l~wsp~---~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
...|+|+++ + ++.+...+.|+.++..+ +.+..+.. ......+|+|+++|
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~-------------------------g~v~~~~~--~~~~P~giavd~dG 193 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVN-------------------------QYVDIKTT--NIGQCADVNFTLNG 193 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTT-------------------------TEEEEECC--CCSCEEEEEECTTC
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCC-------------------------CEEEEeec--CCCCccEEEECCCC
Confidence 345889983 5 44444448899999876 55444332 34568999999999
Q ss_pred CEEEEEeCCC-----eEEEEeCCCCee-EEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEc-cC
Q psy4876 348 YMLGVGTSLG-----TVQLWDVSAKKK-CRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQ-NH 417 (609)
Q Consensus 348 ~~Lasgs~dg-----~I~iwd~~~~~~-~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~-~h 417 (609)
+ |+++...+ .+...+...+.. ...+. .-.....++++ +.++++-..++.|+.+|..++......+. +.
T Consensus 194 ~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~ 271 (433)
T 4hw6_A 194 D-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT 271 (433)
T ss_dssp C-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC
T ss_pred C-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC
Confidence 9 55554322 233333322111 01111 12233445553 45555655678899999876532122222 12
Q ss_pred CCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCCCccceEeecC---------------CcccEEEEEE-------
Q psy4876 418 TQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVPGQHTFSTQPIHSLSR---------------HQAAVKAIAW------- 474 (609)
Q Consensus 418 ~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~---------------h~~~V~~l~~------- 474 (609)
...-..|+|+|+|++|..+. ..+.|+.++........ .....+.+ .-.....+++
T Consensus 272 ~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~--~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~ 349 (433)
T 4hw6_A 272 KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL--AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYA 349 (433)
T ss_dssp CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB--CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGT
T ss_pred CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc--CcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccc
Confidence 22335799999999555544 56789998865321000 00111111 1123567888
Q ss_pred --cCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC------------------CCCeEEEEEcCCCCeEEEEEecCCC
Q psy4876 475 --CPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT------------------KSQVCALLWNSDYKELVSAHGFAQN 534 (609)
Q Consensus 475 --sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~------------------~~~v~sl~~s~~g~~l~~~sG~~dg 534 (609)
.+++ .|+++- ...+.|+.++. +|........ -.....|++++....|+++ -...+
T Consensus 350 ~dd~~g-~lyvaD--~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa-D~~n~ 424 (433)
T 4hw6_A 350 GEEDEY-DFYFCD--RDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG-DCDNH 424 (433)
T ss_dssp TSSCCE-EEEEEE--TTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE-EGGGT
T ss_pred ccCCCC-cEEEEE--CCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE-eCCCC
Confidence 5554 566654 35788999985 5543322211 0136788888443344443 33566
Q ss_pred eEEEEEC
Q psy4876 535 QLIIWKY 541 (609)
Q Consensus 535 ~I~Iwd~ 541 (609)
.|+.++.
T Consensus 425 rIr~i~~ 431 (433)
T 4hw6_A 425 RVRKIAP 431 (433)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 7777664
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.022 Score=57.70 Aligned_cols=232 Identities=11% Similarity=0.089 Sum_probs=126.9
Q ss_pred ceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 269 DYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 269 ~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
+..+..|.++++.+++++..+.|+.- ...+ .....+.... ..+.+..+.+.+++
T Consensus 79 ~~~~~~i~~~~~~~~~~g~~g~i~~S-~DgG------------------------~tW~~~~~~~~~~~~~~~i~~~~~~ 133 (327)
T 2xbg_A 79 DYRFNSVSFQGNEGWIVGEPPIMLHT-TDGG------------------------QSWSQIPLDPKLPGSPRLIKALGNG 133 (327)
T ss_dssp CCEEEEEEEETTEEEEEEETTEEEEE-SSTT------------------------SSCEECCCCTTCSSCEEEEEEEETT
T ss_pred CccEEEEEecCCeEEEEECCCeEEEE-CCCC------------------------CCceECccccCCCCCeEEEEEECCC
Confidence 34577888887667777777765542 2210 2223322211 23457788887777
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEE-EecCCCCceEEEEec--CCEEEEEecCCeEEE-EEcCCCCeeEEEEccCCCCeEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCR-TMDGHDVRVGALAWN--TYILSSGSRCGNIVH-HDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~i-wd~~~~~~~~~~~~~h~~~V~~ 423 (609)
..++++ .+|.|.. ..+.++.-. ....+...+..+.+. +.+++.+ .+|.|.. +|-. +..-...-......+..
T Consensus 134 ~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~ 209 (327)
T 2xbg_A 134 SAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEPG-QTAWEPHNRTTSRRLHN 209 (327)
T ss_dssp EEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE-TTSSEEEEECTT-CSSCEEEECCSSSCEEE
T ss_pred CEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCCC-CCceeECCCCCCCccce
Confidence 666655 4564422 122233322 223455678888883 4555544 4555544 3321 11111112345567889
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA 502 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~ 502 (609)
+.+.+++.++++ +.+|.+++++.+.+.. ...+..- ..+...+.++++.+++ .+++++ .++.| ++....|+
T Consensus 210 ~~~~~~g~~~~~-~~~G~~~~s~~D~G~t---W~~~~~~~~~~~~~~~~v~~~~~~-~~~~~g---~~g~i-~~S~DgG~ 280 (327)
T 2xbg_A 210 MGFTPDGRLWMI-VNGGKIAFSDPDNSEN---WGELLSPLRRNSVGFLDLAYRTPN-EVWLAG---GAGAL-LCSQDGGQ 280 (327)
T ss_dssp EEECTTSCEEEE-ETTTEEEEEETTEEEE---ECCCBCTTSSCCSCEEEEEESSSS-CEEEEE---STTCE-EEESSTTS
T ss_pred eEECCCCCEEEE-eCCceEEEecCCCCCe---eEeccCCcccCCcceEEEEecCCC-EEEEEe---CCCeE-EEeCCCCc
Confidence 999999876654 5678888775332310 0111110 0122358899998865 566665 36766 45555565
Q ss_pred eeEEEc----CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 503 CLDSID----TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 503 ~~~~~~----~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
.-..+. ....+..+.|..++..+++ | .+|.|.-++-
T Consensus 281 tW~~~~~~~~~~~~~~~v~~~~~~~~~~~--G-~~G~i~~~~~ 320 (327)
T 2xbg_A 281 TWQQDVDVKKVPSNFYKILFFSPDQGFIL--G-QKGILLRYVT 320 (327)
T ss_dssp SCEECGGGTTSSSCCCEEEEEETTEEEEE--C-STTEEEEECC
T ss_pred ccEEcCccCCCCCCeEEEEEECCCceEEE--c-CCceEEEEcC
Confidence 544443 2356788888766554443 4 6787776653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.85 E-value=5.3e-05 Score=85.74 Aligned_cols=216 Identities=9% Similarity=-0.014 Sum_probs=128.0
Q ss_pred CCeEEEEEccCCCEEEEEe-CCCeEEEEeCCC----CeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCC
Q psy4876 336 ENVCSVAWIQEGYMLGVGT-SLGTVQLWDVSA----KKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSR 407 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs-~dg~I~iwd~~~----~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~ 407 (609)
..+..|+|.+.+..|+.+. ..+.|+.+++.. ......+.........|+++ +.++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4567899998776666654 457899999875 22222222112223445553 455555556788999998764
Q ss_pred CeeEEEEccCCCCeEEEEEccCCCEEEEEeC-C-CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEE
Q psy4876 408 DHKVALLQNHTQEVCGLKWSPDGRYLASGGN-D-NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 408 ~~~~~~~~~h~~~V~~l~~spdg~~lasgs~-D-g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 485 (609)
. ....+.........|+++|.+.+|+.+.. . +.|.++++.... ....+.........|+|+|++..|+++-
T Consensus 486 ~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~------~~~l~~~~l~~PnGlavd~~~~~LY~aD 558 (699)
T 1n7d_A 486 K-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENIQWPNGITLDLLSGRLYWVD 558 (699)
T ss_dssp C-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC------CCEESCSSCSSCCCEEECTTTCCEEEEE
T ss_pred c-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC------eeEEEeCCCCCccEEEEeccCCEEEEEe
Confidence 2 22223323345678999996555554432 2 678887776431 1111112233457899999888888876
Q ss_pred eccCCCeEEEEECCCCceeEEEcCC---CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEE
Q psy4876 486 GGTADRHIYFWNVSSGACLDSIDTK---SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAM 562 (609)
Q Consensus 486 gGs~Dg~I~iwd~~t~~~~~~~~~~---~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~ 562 (609)
. ..+.|.++|+........+... .....|++..+ .|+.+ ....+.|..++..+++.+..+.......+.|++
T Consensus 559 ~--~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywt-d~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 559 S--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWT-DIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp T--TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEE-CSTTTCEEEEETTTEEEEECCCTTCSSCCCCCB
T ss_pred c--CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEE-eCCCCeEEEEEccCCCceEEeecCCCCCcEEEE
Confidence 3 6789999998743333222211 23445666443 55554 346789999998888877766543333445544
Q ss_pred e
Q psy4876 563 S 563 (609)
Q Consensus 563 s 563 (609)
.
T Consensus 634 ~ 634 (699)
T 1n7d_A 634 F 634 (699)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0068 Score=62.32 Aligned_cols=228 Identities=13% Similarity=0.143 Sum_probs=125.3
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCee--EEEec---CCCCceEEEEecCC-----EEEEEec-C-----CeE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKK--CRTMD---GHDVRVGALAWNTY-----ILSSGSR-C-----GNI 399 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~--~~~l~---~h~~~V~~l~~~~~-----~L~sgs~-d-----g~I 399 (609)
.....|+|.|+|++++ +..+|.|.+++ +++. +..+. ........|+|++. .|+.+.. . ..|
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 4577999999998554 56679999998 4432 22221 22456788999643 5555543 2 678
Q ss_pred EEEEcCCCC----ee-EEEEc---cCCCCeEEEEEccCCCEEEEEeC-------------CCcEEEEeCCCCCCCC----
Q psy4876 400 VHHDVRSRD----HK-VALLQ---NHTQEVCGLKWSPDGRYLASGGN-------------DNLLNIWSGVPGQHTF---- 454 (609)
Q Consensus 400 ~iwd~~~~~----~~-~~~~~---~h~~~V~~l~~spdg~~lasgs~-------------Dg~I~iwd~~~~~~~~---- 454 (609)
..++..... .. +..+. ........|+|.|||.+.++.+. .|.|.-++.... ...
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~-~p~~npf 186 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGE-PAPGNPF 186 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS-BCTTCTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCC-CCCCCcc
Confidence 888876431 11 12232 11123468999999976666432 146666666531 000
Q ss_pred -----CccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC-------eEEEEECCC----------------CceeEE
Q psy4876 455 -----STQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR-------HIYFWNVSS----------------GACLDS 506 (609)
Q Consensus 455 -----~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg-------~I~iwd~~t----------------~~~~~~ 506 (609)
....+.. .++. ....++|+|+...|+++-.| .+. .|.+..-.. ...+..
T Consensus 187 ~~~~~~~~~i~a-~G~r-np~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 187 LGRRGARPEVYS-LGHR-NPQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TTCTTSCTTEEE-ECCS-EECCCEECTTTCCEEEEEEC-C------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred cCCCCCCccEEE-EcCC-CcccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 0011111 1232 35678999955567776542 222 243332111 012233
Q ss_pred EcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce------EEEEeCCCCCEEEEEEeCCCCEEEEEE
Q psy4876 507 IDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK------VAELHGHSARVLNLAMSPDETTVLSAG 573 (609)
Q Consensus 507 ~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~------~~~l~~h~~~V~~l~~spdg~~L~s~s 573 (609)
+..+.....++| .+|..+++ ....+.|...++..... ...+..-..++.++++.|||.++++..
T Consensus 264 ~~~~~ap~G~~~-~~G~l~v~--~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 264 WPQGFPPGNLAF-FRGDLYVA--GLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CTTCCCEEEEEE-ETTEEEEE--ETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCCCCcceEE-ECCEEEEE--ECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 333445677887 45554444 44667788777653321 222222346799999999998776654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.031 Score=62.16 Aligned_cols=229 Identities=8% Similarity=-0.017 Sum_probs=147.5
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEec-CCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMD-GHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
.+|+.+ ....|+..++.+......+. ..-..+..|+|+ +.++++-..++.|..+++.... ....+........+
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LEHVVEFGLDYPEG 84 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCE
T ss_pred cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cEEEEeCCCCCcce
Confidence 355555 44789999998765443333 223467788995 3455566677899999987643 23333323345778
Q ss_pred EEEccCCCEE-EEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc
Q psy4876 424 LKWSPDGRYL-ASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA 502 (609)
Q Consensus 424 l~~spdg~~l-asgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~ 502 (609)
|++.+.+..| ++-...+.|.+.++... .....+...-....+|+++|....++.+--| ..+.|...++....
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~------~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG~~ 157 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQ------HRQVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSE 157 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTST------TCEEEECSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCS
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCC------cEEEEEeCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCCCc
Confidence 9998765555 44445678999998754 1111222334456899999977677777522 35788888887555
Q ss_pred eeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEE
Q psy4876 503 CLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWK 582 (609)
Q Consensus 503 ~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWd 582 (609)
....+..-.....|++++++..|+.+- ...+.|..+++..... ..+.........|++.. +.++++-...+.|...|
T Consensus 158 ~~~l~~~~~~P~GlalD~~~~~LY~aD-~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 158 RTTLVPNVGRANGLTIDYAKRRLYWTD-LDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp CEEEECSCSSEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred eEEEECCCCCcceEEEccccCEEEEEE-CCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 444444456789999999988888864 4678999999865443 33333344566888764 33444444568888888
Q ss_pred cCCCcc
Q psy4876 583 IFEKVK 588 (609)
Q Consensus 583 l~~~~~ 588 (609)
..++..
T Consensus 235 k~tg~~ 240 (628)
T 4a0p_A 235 KTSGQN 240 (628)
T ss_dssp TTTCCS
T ss_pred CCCCCc
Confidence 766543
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.007 Score=61.60 Aligned_cols=197 Identities=14% Similarity=0.202 Sum_probs=127.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe------cCC---EEEEEec---CCeEEEEEcCCCCeeEEEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW------NTY---ILSSGSR---CGNIVHHDVRSRDHKVALL 414 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~------~~~---~L~sgs~---dg~I~iwd~~~~~~~~~~~ 414 (609)
..+++.....+-+.+||+ +|+.++.+.. +++..+.. .+. ++++..+ +.+|.+|++......+..+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 355655666788999999 7888888864 45555554 232 3344444 4789999774222234444
Q ss_pred cc------CC-CCeEEEEE--ccC-CC-EEEEEeCCCcEEEEeCCCC-CCCCCccceEeecCCcccEEEEEEcCCCCcEE
Q psy4876 415 QN------HT-QEVCGLKW--SPD-GR-YLASGGNDNLLNIWSGVPG-QHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 415 ~~------h~-~~V~~l~~--spd-g~-~lasgs~Dg~I~iwd~~~~-~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 482 (609)
.. .. ..+.++|+ ++. +. ++++...+|.+..|++... ......+.++++.. .+.+..+...+....|+
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY 195 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE
Confidence 21 12 56777888 774 44 6788888999999998432 11122356677654 35688888888776666
Q ss_pred EEEeccCCCeEEEEECC-----CCceeEEEcCC---CCeEEEEE--cCCCC-eEEEEEecCCCeEEEEECC-CCceEEEE
Q psy4876 483 ASGGGTADRHIYFWNVS-----SGACLDSIDTK---SQVCALLW--NSDYK-ELVSAHGFAQNQLIIWKYP-SLVKVAEL 550 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~-----t~~~~~~~~~~---~~v~sl~~--s~~g~-~l~~~sG~~dg~I~Iwd~~-~~~~~~~l 550 (609)
+.- ++.-|..+|.+ +++.+..+... ..+..|++ .++++ +|++++ -.+++..|||.. +.+.+..+
T Consensus 196 v~e---Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs-QG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 196 IAE---EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS-QGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEE---TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE-GGGTEEEEEESSTTCCEEEEE
T ss_pred Eec---ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc-CCCCEEEEEECCCCCcEEEEE
Confidence 653 66667777755 34556555433 46788877 56666 666654 357899999996 67777777
Q ss_pred e
Q psy4876 551 H 551 (609)
Q Consensus 551 ~ 551 (609)
.
T Consensus 272 ~ 272 (355)
T 3amr_A 272 R 272 (355)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.013 Score=65.09 Aligned_cols=231 Identities=9% Similarity=0.005 Sum_probs=135.7
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEe-CCCeEE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGT-SLGTVQ 360 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs-~dg~I~ 360 (609)
++.-+....|+..++.. ...........-..+..|+|++.+..|+.+. ..+.|.
T Consensus 11 ~~~~~~~~~I~~i~~~~-------------------------~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~ 65 (619)
T 3s94_A 11 LLLYANRRDLRLVDATN-------------------------GKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIK 65 (619)
T ss_dssp CEEEECSSBEEEECCC----------------------------------CBCCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEeccccEEEEeCCC-------------------------CcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEE
Confidence 55556677888888865 2211111222345688999999777666654 457899
Q ss_pred EEeCCCCee-EEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEE
Q psy4876 361 LWDVSAKKK-CRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASG 436 (609)
Q Consensus 361 iwd~~~~~~-~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg 436 (609)
.+++..... ...+...-.....|+++ ++++++-...+.|.+.++.... ....+...-....+|++.|.+.+|+..
T Consensus 66 r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~Iavdp~~g~ly~t 144 (619)
T 3s94_A 66 RTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYWT 144 (619)
T ss_dssp EEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCCEEEETTTTEEEEE
T ss_pred EEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-EEEEEeCCCCCCceEEEecCCCeEEEe
Confidence 999875432 33344333556677774 4455565677899999998653 222332344567889999976666555
Q ss_pred eC--CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc-CCCCe
Q psy4876 437 GN--DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID-TKSQV 513 (609)
Q Consensus 437 s~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~-~~~~v 513 (609)
.. .+.|...++... .........-.....|++++++..|+++- ...+.|..+|+.......... .....
T Consensus 145 D~g~~~~I~r~~~dG~------~~~~l~~~~~~~P~Glald~~~~~LY~aD--~~~~~I~~~~~dG~~~~~~~~~~~~~P 216 (619)
T 3s94_A 145 DWGEVPKIERAGMDGS------SRFIIINSEIYWPNGLTLDYEEQKLYWAD--AKLNFIHKSNLDGTNRQAVVKGSLPHP 216 (619)
T ss_dssp ECSSSCEEEEEETTSC------SCEEEECSSCSSEEEEEEETTTTEEEEEE--TTTCCEEEESSSCCEEC---------C
T ss_pred ccCCCCEEEEEECCCC------ceEEEEeCCCCCCcEEEEEccCCEEEEEe--CCCCeEEEecCCCCccEEEEeCCCCCc
Confidence 53 357777777643 22222222345678999999887787775 367889999987543322222 12234
Q ss_pred EEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE
Q psy4876 514 CALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE 549 (609)
Q Consensus 514 ~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~ 549 (609)
..+++..+ .++.+ ....+.|...|..+++....
T Consensus 217 ~gi~~~~~--~ly~t-d~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 217 FALTLFED--ILYWT-DWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp CCEEESSS--EEEEE-CTTTCSEEEEESSSCCCCEE
T ss_pred eEEEEeCC--EEEEe-cCCCCEEEEEECCCCcccEE
Confidence 56677655 55544 44677888888876654433
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0077 Score=61.32 Aligned_cols=183 Identities=10% Similarity=0.177 Sum_probs=119.0
Q ss_pred CEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccC----CC---EEEEEe-C--CCcEEEEeCCCCCCCCCcc
Q psy4876 388 YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPD----GR---YLASGG-N--DNLLNIWSGVPGQHTFSTQ 457 (609)
Q Consensus 388 ~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd----g~---~lasgs-~--Dg~I~iwd~~~~~~~~~~~ 457 (609)
.+++.....+.+.+||+ ++ ..+..+.. +.++.+..-|+ |+ ++++.. . ++.|.+|++.... .
T Consensus 41 s~ii~t~k~~gL~Vydl-~G-~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~-----~ 111 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DG-KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN-----G 111 (355)
T ss_dssp CEEEEEETTTEEEEEET-TS-CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT-----C
T ss_pred cEEEEEcCCCCEEEEcC-CC-cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC-----C
Confidence 45666677789999999 44 46666653 56777777663 22 223333 3 5789999774221 1
Q ss_pred ceEeecC-------CcccEEEEEE--cCCCCc--EEEEEeccCCCeEEEEECC-------CCceeEEEcCCCCeEEEEEc
Q psy4876 458 PIHSLSR-------HQAAVKAIAW--CPWSPN--VLASGGGTADRHIYFWNVS-------SGACLDSIDTKSQVCALLWN 519 (609)
Q Consensus 458 ~~~~~~~-------h~~~V~~l~~--sp~~~~--llasggGs~Dg~I~iwd~~-------t~~~~~~~~~~~~v~sl~~s 519 (609)
.+..+.. ....+..+|+ +|.+.. ++++. .++.+..|++. +++.++++...+++..|...
T Consensus 112 ~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~---k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvD 188 (355)
T 3amr_A 112 TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG---KEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAAD 188 (355)
T ss_dssp CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC---SSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEE
T ss_pred ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC---CCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEc
Confidence 2333311 1144566777 775443 44443 67999999883 34667888888999999999
Q ss_pred CCCCeEEEEEecCCCeEEEEECC-----CCceEEEEe-CC-CCCEEEEEE--eCCCC-EEEEEE-CCCCEEEEEcC
Q psy4876 520 SDYKELVSAHGFAQNQLIIWKYP-----SLVKVAELH-GH-SARVLNLAM--SPDET-TVLSAG-ADETLRLWKIF 584 (609)
Q Consensus 520 ~~g~~l~~~sG~~dg~I~Iwd~~-----~~~~~~~l~-~h-~~~V~~l~~--spdg~-~L~s~s-~Dg~I~iWdl~ 584 (609)
+....|++ +.++..|..|+.. +++.+..+. +| ...+..|++ .++++ +|++++ .++++.+||..
T Consensus 189 d~~g~Lyv--~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 189 DEYGRLYI--AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTTTEEEE--EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CCCCeEEE--ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 99999998 4466666666644 344554442 22 246888888 45666 666666 57899999996
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.045 Score=56.20 Aligned_cols=233 Identities=13% Similarity=0.114 Sum_probs=128.8
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe-eEEEec---CCCCceEEEEecC-----CEEEEEec----C----C
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK-KCRTMD---GHDVRVGALAWNT-----YILSSGSR----C----G 397 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~-~~~~l~---~h~~~V~~l~~~~-----~~L~sgs~----d----g 397 (609)
-.....|+|.|+|++ +++..+|.|.++|. +++ .+..+. ........|++++ ..|+.+.. + .
T Consensus 28 l~~P~~ia~~pdG~l-~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRY-LVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEE-EEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeE-EEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 356789999999974 45666799999973 444 222221 2235678899964 35555443 3 5
Q ss_pred eEEEEEcCCCC------eeE-EEEc-cCCCCeEEEEEccCCCEEEEEeC-------------CCcEEEEeCCCCCC---C
Q psy4876 398 NIVHHDVRSRD------HKV-ALLQ-NHTQEVCGLKWSPDGRYLASGGN-------------DNLLNIWSGVPGQH---T 453 (609)
Q Consensus 398 ~I~iwd~~~~~------~~~-~~~~-~h~~~V~~l~~spdg~~lasgs~-------------Dg~I~iwd~~~~~~---~ 453 (609)
.|..|+..... +.+ ..+. ........|+|.|||.++++.+. .|.|.-++....-. .
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 67788776431 111 1122 11123467999999987666432 24566666542100 0
Q ss_pred CCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCC-CeEEEEECCC--------C--------ceeEEE-cCCCCeEE
Q psy4876 454 FSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD-RHIYFWNVSS--------G--------ACLDSI-DTKSQVCA 515 (609)
Q Consensus 454 ~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~D-g~I~iwd~~t--------~--------~~~~~~-~~~~~v~s 515 (609)
.....+.. .++.. ...++|+|+...|+++-.|... ..|.+..-.. + ..+..+ ..+.....
T Consensus 186 f~~~~i~a-~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G 263 (354)
T 3a9g_A 186 FPNSPIWS-YGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG 263 (354)
T ss_dssp STTCCEEE-ECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred CCCCcEEE-EccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence 00011211 23333 4689999955567776542111 1233322100 0 122333 23456788
Q ss_pred EEEc-------CCCCeEEEEEecCCCeEEEEECCCC-ceE--EEEe-CCCCCEEEEEEeCCCCEEEEEE
Q psy4876 516 LLWN-------SDYKELVSAHGFAQNQLIIWKYPSL-VKV--AELH-GHSARVLNLAMSPDETTVLSAG 573 (609)
Q Consensus 516 l~~s-------~~g~~l~~~sG~~dg~I~Iwd~~~~-~~~--~~l~-~h~~~V~~l~~spdg~~L~s~s 573 (609)
++|. .+|.++++ ....+.|..+++... ... ..+. +-..++.++++.|||.++++..
T Consensus 264 ~~~y~g~~fp~~~G~l~v~--~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIA--CLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEECCSSSCGGGTTEEEEE--ETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred eEEECCCCCcccCCcEEEE--EcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 8884 45655554 456788888888753 222 2332 2346799999999998666654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.59 E-value=0.19 Score=59.79 Aligned_cols=249 Identities=7% Similarity=-0.023 Sum_probs=140.1
Q ss_pred ceeeeeeecCCCCeEEEEEccC------CCEEEEEeC-CCeEEEEeCCCCeeEEEecC-CCCceEEEEe---c-CCEEEE
Q psy4876 325 AIDHLMDLEGNENVCSVAWIQE------GYMLGVGTS-LGTVQLWDVSAKKKCRTMDG-HDVRVGALAW---N-TYILSS 392 (609)
Q Consensus 325 ~~~~l~~~~h~~~V~~v~~spd------g~~Lasgs~-dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~---~-~~~L~s 392 (609)
.+......+-...|.|+++.+. +.++|+|.. |++|+|+++.+.+.+....- ......++.. . ..+|..
T Consensus 543 ~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~i 622 (1158)
T 3ei3_A 543 ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLC 622 (1158)
T ss_dssp EEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEE
T ss_pred ceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEE
Confidence 3334433344678999999863 379999997 99999999987665543221 1223444444 3 357889
Q ss_pred EecCCeEEEEEcCC--CCee-EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccE
Q psy4876 393 GSRCGNIVHHDVRS--RDHK-VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAV 469 (609)
Q Consensus 393 gs~dg~I~iwd~~~--~~~~-~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V 469 (609)
|-.||.+..+.++. +... .+...-...++.=..+...|..-+.+..+.-..+|--. + .....-.....--
T Consensus 623 gl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~------~l~~s~l~~~~v~ 695 (1158)
T 3ei3_A 623 ALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-H------KLVFSNVNLKEVN 695 (1158)
T ss_dssp EETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-S------SEEEEEBSSSCCC
T ss_pred EeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-C------ceEEeccChHHhc
Confidence 99999987666543 2211 11112223455444444444443333334555555433 2 1111111111111
Q ss_pred EEEEEcCCC--CcEEEEEeccCCCeEEEEECCCC--ceeEEEcCCCCeEEEEEcCCCCeEEEEEecC-------------
Q psy4876 470 KAIAWCPWS--PNVLASGGGTADRHIYFWNVSSG--ACLDSIDTKSQVCALLWNSDYKELVSAHGFA------------- 532 (609)
Q Consensus 470 ~~l~~sp~~--~~llasggGs~Dg~I~iwd~~t~--~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~------------- 532 (609)
....|+... ..++++ .++.++|..+..- -.+.++.....+..++++|..+.+++++...
T Consensus 696 ~~~~F~se~~~~g~v~~----~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~ 771 (1158)
T 3ei3_A 696 YMCPLNSDGYPDSLALA----NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALR 771 (1158)
T ss_dssp EEEEECCSSSTTEEEEE----CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESS
T ss_pred eEeccCcccCCCcEEEE----cCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhh
Confidence 233453221 124433 3566888877532 3456667778899999999888766543210
Q ss_pred ----------------------------------CCeEEEEECCCCceEEEEeC-CCCCEEEEEE---eCC-CCEEEEEE
Q psy4876 533 ----------------------------------QNQLIIWKYPSLVKVAELHG-HSARVLNLAM---SPD-ETTVLSAG 573 (609)
Q Consensus 533 ----------------------------------dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~---spd-g~~L~s~s 573 (609)
.+.|+++|..+++.+..+.- ....+.+++. ..+ ..+|+.|+
T Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGT 851 (1158)
T 3ei3_A 772 PSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGT 851 (1158)
T ss_dssp CCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEE
T ss_pred hhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEe
Confidence 13477888878877665543 2344555553 222 46888776
Q ss_pred ----------CCCCEEEEEcC
Q psy4876 574 ----------ADETLRLWKIF 584 (609)
Q Consensus 574 ----------~Dg~I~iWdl~ 584 (609)
..|.|.+|++.
T Consensus 852 a~~~~~e~~~~~Gri~vf~v~ 872 (1158)
T 3ei3_A 852 AMVYPEEAEPKQGRIVVFQYS 872 (1158)
T ss_dssp EECCTTCSSCCCEEEEEEEEE
T ss_pred eecCCCCCCCCceEEEEEEEE
Confidence 24789999987
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.019 Score=63.69 Aligned_cols=224 Identities=13% Similarity=0.019 Sum_probs=130.6
Q ss_pred CCeEEEEeCCCCe-eEEEecCCCCceEEEEec--CCEEE-EEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCC
Q psy4876 356 LGTVQLWDVSAKK-KCRTMDGHDVRVGALAWN--TYILS-SGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR 431 (609)
Q Consensus 356 dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~~--~~~L~-sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 431 (609)
...|++.++.... ....+...-.....++|+ +..|+ +-...+.|..+++.........+...-....+|++.+.+.
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence 4678888887643 222233344557788884 34444 4445678988888764222233333335788999999655
Q ss_pred EEE-EEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc-C
Q psy4876 432 YLA-SGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID-T 509 (609)
Q Consensus 432 ~la-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~-~ 509 (609)
.|+ +-...+.|.+.++... .....+........+|+++|.+..++.+.-| ..+.|...++.......... .
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~------~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG~~~~~l~~~~ 169 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGS------LRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFIIINSE 169 (619)
T ss_dssp EEEEEETTTTEEEEEETTSC------SCEEEECSSCSCCCCEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEEEECSS
T ss_pred EEEEEeCCCCEEEEEECCCC------CEEEEEeCCCCCCceEEEecCCCeEEEeccC-CCCEEEEEECCCCceEEEEeCC
Confidence 554 4455789999998754 2212222334456789999987778877532 34678888876433333332 3
Q ss_pred CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 510 KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 510 ~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
-.....|++++++..|+.+- ...+.|..+++........+.+.......|++..+ .++++-...+.|...|..++..
T Consensus 170 ~~~P~Glald~~~~~LY~aD-~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 170 IYWPNGLTLDYEEQKLYWAD-AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEE-TTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred CCCCcEEEEEccCCEEEEEe-CCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 34789999999988888874 35778999998654333222222222346677555 3334444567888888876654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.064 Score=54.95 Aligned_cols=242 Identities=10% Similarity=0.096 Sum_probs=129.7
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEe-------cCCCCceEEEEecC-----CEEEEEe-c-------
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTM-------DGHDVRVGALAWNT-----YILSSGS-R------- 395 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l-------~~h~~~V~~l~~~~-----~~L~sgs-~------- 395 (609)
.....|+|.|+|++|+++...|.|++++.. +.....+ .........|++++ ..|+... .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 457899999999844556678999999853 3321111 11234567889853 3444332 2
Q ss_pred CCeEEEEEcCCCC----eeEEEEcc------CCCCeEEEEEccCCCEEEEEeC-------------CCcEEEEeCCCCCC
Q psy4876 396 CGNIVHHDVRSRD----HKVALLQN------HTQEVCGLKWSPDGRYLASGGN-------------DNLLNIWSGVPGQH 452 (609)
Q Consensus 396 dg~I~iwd~~~~~----~~~~~~~~------h~~~V~~l~~spdg~~lasgs~-------------Dg~I~iwd~~~~~~ 452 (609)
...|..|++.... .....+.. .......|+|.|||.+.++.+. .|.|.-++....-.
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 2357677665331 11111111 1122467999999965555433 24677777653200
Q ss_pred ---CC-----CccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc----------------------
Q psy4876 453 ---TF-----STQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA---------------------- 502 (609)
Q Consensus 453 ---~~-----~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~---------------------- 502 (609)
.+ ....+.. .++ .....++|+|....|+++-.| .++.=.|.-+..+.
T Consensus 177 ~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g-~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHG-PRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp TTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEEC-SBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecC-CCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 00 0011111 133 335789999954467766432 22111222221111
Q ss_pred ---------eeEEEcCCCCeEEEEEcC-------CCCeEEEEEecCCCeEEEEECCCCceEEE--E-eCCCCCEEEEEEe
Q psy4876 503 ---------CLDSIDTKSQVCALLWNS-------DYKELVSAHGFAQNQLIIWKYPSLVKVAE--L-HGHSARVLNLAMS 563 (609)
Q Consensus 503 ---------~~~~~~~~~~v~sl~~s~-------~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~--l-~~h~~~V~~l~~s 563 (609)
.+..+..+..+..+.|.. ++.++++ ....+.|...++..+..+.. + .....++.+|++.
T Consensus 254 ~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIG--ALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp BSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEE--ETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred CCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEE--EccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 122333445677788864 3555554 45678888888776543332 2 1223589999999
Q ss_pred CCCCEEEEEECCCCEEEEEcC
Q psy4876 564 PDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 564 pdg~~L~s~s~Dg~I~iWdl~ 584 (609)
|||.++++.. +..=+||.+.
T Consensus 332 pdG~lyv~td-~~~g~I~ri~ 351 (353)
T 2g8s_A 332 PDGYLYVLTD-ESSGELLKVS 351 (353)
T ss_dssp TTSCEEEEEC-STTEEEEEEE
T ss_pred CCCcEEEEEe-CCCCEEEEEe
Confidence 9998665433 2333566653
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0077 Score=59.93 Aligned_cols=227 Identities=12% Similarity=0.094 Sum_probs=115.4
Q ss_pred CCEEEEEe-CC-----CeEEEEeCCCCeeEE--EecCCCCceEEEEecCCEEEEEecC-----CeEEEEEcCCCC----e
Q psy4876 347 GYMLGVGT-SL-----GTVQLWDVSAKKKCR--TMDGHDVRVGALAWNTYILSSGSRC-----GNIVHHDVRSRD----H 409 (609)
Q Consensus 347 g~~Lasgs-~d-----g~I~iwd~~~~~~~~--~l~~h~~~V~~l~~~~~~L~sgs~d-----g~I~iwd~~~~~----~ 409 (609)
+..++.|+ .+ ..+.+||..+.+-.. .+.........+..++.+++.|+.+ ..+.+||+.+.. .
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~ 94 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWY 94 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCE
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeE
Confidence 34555555 22 368899988765332 1222222334455578888888865 358899988753 1
Q ss_pred eEEEEccCCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 410 KVALLQNHTQEVCGLKWSPDGRYLASGGND-----NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~lasgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
.+..+.........+.+ ++.+++.|+.+ ..+.+||+.+..- ..+..+........++.+ +..+++.
T Consensus 95 ~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~---~~~iyv~ 165 (301)
T 2vpj_A 95 SVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW----SMLGDMQTAREGAGLVVA---SGVIYCL 165 (301)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE----EEEEECSSCCBSCEEEEE---TTEEEEE
T ss_pred ECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE----EECCCCCCCcccceEEEE---CCEEEEE
Confidence 12111111111222222 67777777654 3688999876521 222222211122222233 3457777
Q ss_pred EeccC---CCeEEEEECCCCceeEEEcCCC---CeEEEEEcCCCCeEEEEEecC----CCeEEEEECCCCceEEE--EeC
Q psy4876 485 GGGTA---DRHIYFWNVSSGACLDSIDTKS---QVCALLWNSDYKELVSAHGFA----QNQLIIWKYPSLVKVAE--LHG 552 (609)
Q Consensus 485 ggGs~---Dg~I~iwd~~t~~~~~~~~~~~---~v~sl~~s~~g~~l~~~sG~~----dg~I~Iwd~~~~~~~~~--l~~ 552 (609)
||... -..+.+||+.+.+-...-.... ....+.+ ++ .|++..|.. .+.+.+||..+.+-... +..
T Consensus 166 GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 242 (301)
T 2vpj_A 166 GGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT 242 (301)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred CCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC
Confidence 65211 2568999998765433211111 1122222 33 444443432 35689999877643222 211
Q ss_pred CCCCEEEEEEeCCCCEEEEEECC-----CCEEEEEcCCCc
Q psy4876 553 HSARVLNLAMSPDETTVLSAGAD-----ETLRLWKIFEKV 587 (609)
Q Consensus 553 h~~~V~~l~~spdg~~L~s~s~D-----g~I~iWdl~~~~ 587 (609)
.......+. -++++++.|+.+ ..|.+||+.+..
T Consensus 243 ~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 243 PRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred cccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 111122222 267777777765 356778876643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.007 Score=71.62 Aligned_cols=232 Identities=8% Similarity=0.063 Sum_probs=145.5
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEEEccC--
Q psy4876 341 VAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVALLQNH-- 417 (609)
Q Consensus 341 v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h-- 417 (609)
.-.+|..+.||.=. ...++|+|+++...+..+.-. ..|.--.| +.+.|+..+. ..|+.|++.....++..+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~ 147 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSS 147 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCCeeEEEcC-CeEEEeccCCCCccHHHHhcchh
Confidence 44567777777654 578999999988777776643 45655666 7777776654 579999997644555555545
Q ss_pred --CCCeEEEEEccCCCEEEEEe-------CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEc--CCCCcEEEEEe
Q psy4876 418 --TQEVCGLKWSPDGRYLASGG-------NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWC--PWSPNVLASGG 486 (609)
Q Consensus 418 --~~~V~~l~~spdg~~lasgs-------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~llasgg 486 (609)
...|..-..+++.+|++..| -.|.+.+|..+.+ ..+.+.+|.+....+... +....+++.+.
T Consensus 148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-------~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-------cchhhhHhHhhhheeccCCCCCCceEEEEEE
Confidence 45677888899999987654 2478889988764 334566776665444443 22234554432
Q ss_pred c-cCCCeEEEEECCCC---ceeE---E---E-c---CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC
Q psy4876 487 G-TADRHIYFWNVSSG---ACLD---S---I-D---TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 487 G-s~Dg~I~iwd~~t~---~~~~---~---~-~---~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~ 552 (609)
- ...++++|-++... .... . + . ...-..++..++....++..+ .-|.|++||+.++.++..-+-
T Consensus 221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~it--k~G~~~~~d~~t~~~i~~~ri 298 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT--KYGYIHLYDLETGTCIYMNRI 298 (1630)
T ss_pred ecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEe--cCceEEEEecccchhhhhccc
Confidence 1 12378999988543 1110 0 1 1 122456778888888888766 789999999999988765444
Q ss_pred CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 553 HSARVLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 553 h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
....|...+-+....-++.....|.|.--.+.
T Consensus 299 s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~ 330 (1630)
T 1xi4_A 299 SGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (1630)
T ss_pred cCCceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence 44444444443332233333455555444443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.042 Score=56.32 Aligned_cols=221 Identities=13% Similarity=0.161 Sum_probs=121.0
Q ss_pred EEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec----CCCCeEEEEEccC
Q psy4876 272 LNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE----GNENVCSVAWIQE 346 (609)
Q Consensus 272 v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----h~~~V~~v~~spd 346 (609)
-..|+|.|++ ++.+..++.|++++ . +....+..+. .......|+|+|+
T Consensus 33 P~~ia~~pdG~l~V~e~~g~I~~i~--~-------------------------g~~~~~~~~~v~~~g~~~p~gia~~pd 85 (352)
T 2ism_A 33 PWALAFLPDGGMLIAERPGRIRLFR--E-------------------------GRLSTYAELSVYHRGESGLLGLALHPR 85 (352)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEEE--T-------------------------TEEEEEEECCCCCSTTCSEEEEEECTT
T ss_pred ceEEEEcCCCeEEEEeCCCeEEEEE--C-------------------------CCccEeecceEeecCCCCceeEEECCC
Confidence 3569999987 66677789999998 3 2222222221 3457889999998
Q ss_pred ---CCEEEEEeCC------CeEEEEeCCCCe------eEEEec---CCCCceEEEEe--cCCEEEEEec-----------
Q psy4876 347 ---GYMLGVGTSL------GTVQLWDVSAKK------KCRTMD---GHDVRVGALAW--NTYILSSGSR----------- 395 (609)
Q Consensus 347 ---g~~Lasgs~d------g~I~iwd~~~~~------~~~~l~---~h~~~V~~l~~--~~~~L~sgs~----------- 395 (609)
+..|+++... +.|..|+...+. .+..+. +.......|+| ++.++++.+.
T Consensus 86 f~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~ 165 (352)
T 2ism_A 86 FPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLA 165 (352)
T ss_dssp TTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTT
T ss_pred CCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCC
Confidence 5555555432 578888876431 122233 11122356778 5666555432
Q ss_pred --CCeEEEEEcCCC-------------CeeEEEEccCCCCeEEEEEcc-CCCEEEEEeCCCc--------EEEEeCCCCC
Q psy4876 396 --CGNIVHHDVRSR-------------DHKVALLQNHTQEVCGLKWSP-DGRYLASGGNDNL--------LNIWSGVPGQ 451 (609)
Q Consensus 396 --dg~I~iwd~~~~-------------~~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~--------I~iwd~~~~~ 451 (609)
.|.|..++.+.. ...+ ...+| .....++|+| +|.++++-...+. |.+. ..+.
T Consensus 166 ~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i-~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~ 241 (352)
T 2ism_A 166 SLGGKILRLTPEGEPAPGNPFLGRRGARPEV-YSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGG 241 (352)
T ss_dssp CSSSEEEEECTTSSBCTTCTTTTCTTSCTTE-EEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTC
T ss_pred CCceEEEEEcCCCCCCCCCcccCCCCCCccE-EEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCC
Confidence 256666665530 1111 12233 2366789999 6766555433232 4333 2222
Q ss_pred CC------------CCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc-------eeEEEcCCCC
Q psy4876 452 HT------------FSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA-------CLDSIDTKSQ 512 (609)
Q Consensus 452 ~~------------~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~-------~~~~~~~~~~ 512 (609)
.- ....++..+..| .....++| .++ .++++. ...+.|...++.... ....+.....
T Consensus 242 nyGwp~~~g~~~~~~~~~p~~~~~~~-~ap~G~~~-~~G-~l~v~~--~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~r 316 (352)
T 2ism_A 242 NYGWPRVVGRGNDPRYRDPLYFWPQG-FPPGNLAF-FRG-DLYVAG--LRGQALLRLVLEGERGRWRVLRVETALSGFGR 316 (352)
T ss_dssp BCCTTTCCSCCCCTTSCCCSEECTTC-CCEEEEEE-ETT-EEEEEE--TTTTEEEEEEEEEETTEEEEEEEEEEEESSCC
T ss_pred cCCCCcccCCCCCCCCcCCeEecCCC-CCCcceEE-ECC-EEEEEE--CCCCEEEEEEECCCCcceeecchheecccCCC
Confidence 00 001344444333 34567777 334 455554 356788888776432 1112233457
Q ss_pred eEEEEEcCCCCeEEEE
Q psy4876 513 VCALLWNSDYKELVSA 528 (609)
Q Consensus 513 v~sl~~s~~g~~l~~~ 528 (609)
+..+++.|+|..+++.
T Consensus 317 p~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 317 LREVQVGPDGALYVTT 332 (352)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred eeEEEECCCCcEEEEE
Confidence 8999999999766653
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.057 Score=54.46 Aligned_cols=155 Identities=9% Similarity=0.109 Sum_probs=104.4
Q ss_pred ceeEEEEEecCC-C-eEEEE-cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecC-------CCCe
Q psy4876 269 DYYLNLIDWSHF-N-VLAVA-LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEG-------NENV 338 (609)
Q Consensus 269 ~~~v~~l~wsp~-~-lla~s-~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h-------~~~V 338 (609)
..|-.+++|++. + ++.++ ..+.|..|+... +....+ .+.. ...+
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~-------------------------~~~~~~-~~~~~s~~g~~~~~~ 65 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKT-------------------------QSHFNV-VIDGASSNGDGEQQM 65 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTT-------------------------CCEEEE-CCTTTCCSSCCSEEE
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCC-------------------------CeEEEE-ecCCccccCCCccee
Confidence 446667999874 4 44444 489999999875 443333 3322 1246
Q ss_pred EEEEE---ccCCCEEEEEe-------------CCCeEEEEeCC---CCeeEEEec--CC-----------CCceEEEEe-
Q psy4876 339 CSVAW---IQEGYMLGVGT-------------SLGTVQLWDVS---AKKKCRTMD--GH-----------DVRVGALAW- 385 (609)
Q Consensus 339 ~~v~~---spdg~~Lasgs-------------~dg~I~iwd~~---~~~~~~~l~--~h-----------~~~V~~l~~- 385 (609)
..|.| .|+++++++.. .+..|..||+. +++.+.... .. ......++.
T Consensus 66 sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD 145 (334)
T 2p9w_A 66 SGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD 145 (334)
T ss_dssp EEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC
T ss_pred eEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC
Confidence 89999 68877777544 25779999998 777665443 11 124667777
Q ss_pred -cCCEEEEEecC-CeEEEEEcCCCCeeEEEEcc----CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy4876 386 -NTYILSSGSRC-GNIVHHDVRSRDHKVALLQN----HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVP 449 (609)
Q Consensus 386 -~~~~L~sgs~d-g~I~iwd~~~~~~~~~~~~~----h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~ 449 (609)
+|+..++++.. +.|...+..........+.. .....++|+++|+|..|++...+|.|..+|+..
T Consensus 146 ~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 146 RDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp TTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 47888888888 88877777653211111111 122367999999999988887799999999884
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.04 Score=54.77 Aligned_cols=217 Identities=11% Similarity=0.061 Sum_probs=113.7
Q ss_pred CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEEEEEeCC----CeEEEE
Q psy4876 288 GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYMLGVGTSL----GTVQLW 362 (609)
Q Consensus 288 dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~d----g~I~iw 362 (609)
...+.+||..+ .....+..+. .......+. -++..++.|+.+ ..+.+|
T Consensus 23 ~~~~~~~d~~~-------------------------~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~ 75 (306)
T 3ii7_A 23 PQSCRYFNPKD-------------------------YSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCY 75 (306)
T ss_dssp TTSEEEEETTT-------------------------TEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEE
T ss_pred CceEEEecCCC-------------------------CCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEE
Confidence 35788999888 5555554444 222222333 356677777754 578999
Q ss_pred eCCCCeeEEE--ecCCCCceEEEEecCCEEEEEecC------CeEEEEEcCCCCeeEEEEcc---CCCCeEEEEEccCCC
Q psy4876 363 DVSAKKKCRT--MDGHDVRVGALAWNTYILSSGSRC------GNIVHHDVRSRDHKVALLQN---HTQEVCGLKWSPDGR 431 (609)
Q Consensus 363 d~~~~~~~~~--l~~h~~~V~~l~~~~~~L~sgs~d------g~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~ 431 (609)
|..+.+-... +.........+..++.+++.|+.+ ..+.+||..+.. -..+.. .......+. -+++
T Consensus 76 d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~--~~~~ 151 (306)
T 3ii7_A 76 NVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTES--WHTKPSMLTQRCSHGMVE--ANGL 151 (306)
T ss_dssp ETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTE--EEEECCCSSCCBSCEEEE--ETTE
T ss_pred eCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCc--eEeCCCCcCCcceeEEEE--ECCE
Confidence 9988753332 222223334445578888888765 458899988753 112211 111111222 2666
Q ss_pred EEEEEeC---------CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC---CCeEEEEECC
Q psy4876 432 YLASGGN---------DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA---DRHIYFWNVS 499 (609)
Q Consensus 432 ~lasgs~---------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~---Dg~I~iwd~~ 499 (609)
+++.|+. -..+.+||+.+..- ..+..+.........+.+ +..+++.||... -..+.+||+.
T Consensus 152 iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~ 224 (306)
T 3ii7_A 152 IYVCGGSLGNNVSGRVLNSCEVYDPATETW----TELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIK 224 (306)
T ss_dssp EEEECCEESCTTTCEECCCEEEEETTTTEE----EEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETT
T ss_pred EEEECCCCCCCCcccccceEEEeCCCCCeE----EECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCC
Confidence 7777764 34588999887621 122112111111222233 346777775222 2468899998
Q ss_pred CCceeEEEcCC---CCeEEEEEcCCCCeEEEEEec----CCCeEEEEECCCCc
Q psy4876 500 SGACLDSIDTK---SQVCALLWNSDYKELVSAHGF----AQNQLIIWKYPSLV 545 (609)
Q Consensus 500 t~~~~~~~~~~---~~v~sl~~s~~g~~l~~~sG~----~dg~I~Iwd~~~~~ 545 (609)
+.+-...-... .....+.+ ++ .|++..|. ..+.+.+||..+.+
T Consensus 225 ~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 225 LNEWKMVSPMPWKGVTVKCAAV--GS-IVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TTEEEECCCCSCCBSCCEEEEE--TT-EEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCcEEECCCCCCCccceeEEEE--CC-EEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 76532221111 12222222 34 44444443 23568889987643
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.086 Score=56.42 Aligned_cols=243 Identities=9% Similarity=0.054 Sum_probs=132.6
Q ss_pred EEEEEecCC--C-eEEEEc-CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec--CCCCeEEEEE--
Q psy4876 272 LNLIDWSHF--N-VLAVAL-GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE--GNENVCSVAW-- 343 (609)
Q Consensus 272 v~~l~wsp~--~-lla~s~-dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--h~~~V~~v~~-- 343 (609)
...|+++|. + |+++.. .+.|++.|.+. +.+..+.... .......++|
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~-------------------------~~v~~l~~~~~~~~~~p~~ia~~~ 195 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKN-------------------------RMLSSPLNINTIPTNRIRSIAFNK 195 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTT-------------------------TEEEEEECCTTSSCSBEEEEEECC
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCC-------------------------CEEEEEEccCccccCCCcEEEEee
Confidence 455889983 3 444444 35788888877 5565554432 2245899999
Q ss_pred -----ccCCCEEEEEeCCC-------eEEEEeCCC-CeeE-----EEecCCCCceEEEEec---CCEEEEEecCCeEEEE
Q psy4876 344 -----IQEGYMLGVGTSLG-------TVQLWDVSA-KKKC-----RTMDGHDVRVGALAWN---TYILSSGSRCGNIVHH 402 (609)
Q Consensus 344 -----spdg~~Lasgs~dg-------~I~iwd~~~-~~~~-----~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iw 402 (609)
+++|++|+++...+ .|.+++... +... ..+... .....++.+ +.++++-..++.|..+
T Consensus 196 ~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~ 274 (496)
T 3kya_A 196 KIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRL 274 (496)
T ss_dssp CBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEE
T ss_pred cccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEE
Confidence 99999777766554 266665433 1211 122111 122344553 4667677788899999
Q ss_pred EcC-------CCCe------e----E-EEE-ccCCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCCCCCCccceEee
Q psy4876 403 DVR-------SRDH------K----V-ALL-QNHTQEVCGLKWSPDGRYLASG-GNDNLLNIWSGVPGQHTFSTQPIHSL 462 (609)
Q Consensus 403 d~~-------~~~~------~----~-~~~-~~h~~~V~~l~~spdg~~lasg-s~Dg~I~iwd~~~~~~~~~~~~~~~~ 462 (609)
|+. ++.. . . ..+ .+.......|+|+|+|++|..+ ...+.|+.++........ .....+
T Consensus 275 d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~--~~~~~~ 352 (496)
T 3kya_A 275 DLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEF--ITPYNF 352 (496)
T ss_dssp CHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE--CCCEEE
T ss_pred ecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCccee--cccEEe
Confidence 987 4432 0 1 111 1223456799999999965444 456788886654321000 000111
Q ss_pred cCC---------------cccEE-EEEEc-------CCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC---------
Q psy4876 463 SRH---------------QAAVK-AIAWC-------PWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK--------- 510 (609)
Q Consensus 463 ~~h---------------~~~V~-~l~~s-------p~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~--------- 510 (609)
.+. -.... .++.. ..+ .|+++- +....|+.++ .+|. +.++...
T Consensus 353 aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD--~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~ 427 (496)
T 3kya_A 353 VGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVD--RLNFCVRKVT-PEGI-VSTYAGRGASTSLADG 427 (496)
T ss_dssp EEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEE--GGGTEEEEEC-TTCB-EEEEEESCTTHHHHHS
T ss_pred cCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEEE--CCCCEEEEEe-CCCC-EEEEecccccccccCc
Confidence 110 01233 44443 333 566654 3578899998 4564 3333211
Q ss_pred ----------------CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE
Q psy4876 511 ----------------SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVA 548 (609)
Q Consensus 511 ----------------~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~ 548 (609)
.....|+++++...|+++ -..++.|+.+++.....+.
T Consensus 428 ~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVa-D~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 428 NQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVH-DQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp CSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEE-ETTTTEEEEEEECCCC---
T ss_pred cccccCCCCchhhhhcCCCcEEEEECCCCEEEEE-eCCCCEEEEEECCCCcccc
Confidence 135678888863333333 3456778877776554443
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.089 Score=54.77 Aligned_cols=192 Identities=13% Similarity=0.166 Sum_probs=126.0
Q ss_pred EEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec---CCCCeEEEEEccCCCEEE
Q psy4876 275 IDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE---GNENVCSVAWIQEGYMLG 351 (609)
Q Consensus 275 l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---h~~~V~~v~~spdg~~La 351 (609)
-.|-.+..|+.-.+..||-|++... ....++.+.. ....|..-..+++.++++
T Consensus 111 WkWis~~~l~lVT~taVyHWsi~~~------------------------s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~ 166 (494)
T 1bpo_A 111 WKWISLNTVALVTDNAVYHWSMEGE------------------------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLL 166 (494)
T ss_dssp EEEEETTEEEEECSSEEEEEESSSS------------------------CCCEEEEECCGGGTTCEEEEEEECTTSSEEE
T ss_pred EEecCCCeEEEEcCCeeEEecccCC------------------------CCchhheecchhcccceEEEEEECCCCCeEE
Confidence 5677778888888999999999752 2223333322 356677777788888777
Q ss_pred EEe-------CCCeEEEEeCCCCeeEEEecCCCCceEEEEecC-----CEEEEEecC---CeEEEEEcCCC--C------
Q psy4876 352 VGT-------SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT-----YILSSGSRC---GNIVHHDVRSR--D------ 408 (609)
Q Consensus 352 sgs-------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~-----~~L~sgs~d---g~I~iwd~~~~--~------ 408 (609)
..+ -.|.+.+|..+. +.-+.+.||.+....+..++ .+++.+.+. +.++|-++... +
T Consensus 167 l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~k 245 (494)
T 1bpo_A 167 LTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK 245 (494)
T ss_dssp EEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCC
T ss_pred EEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccc
Confidence 543 237899999875 56778889988877777753 355555543 78999998643 1
Q ss_pred eeEEEEc---cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEE
Q psy4876 409 HKVALLQ---NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 409 ~~~~~~~---~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 485 (609)
..+..+. .-.+-..++..++.-..+..-+.-|.|++||+.++ .++..-.-....|...+-+.....+++..
T Consensus 246 k~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg------t~i~~nrIs~~~iF~t~~~~~~~Gi~~Vn 319 (494)
T 1bpo_A 246 KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG------TCIYMNRISGETIFVTAPHEATAGIIGVN 319 (494)
T ss_dssp EEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred eeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc------eeeeeecccCCceEEecccCCCCcEEEEc
Confidence 1111111 12344567888988888888999999999999999 66666555555555555544444455443
Q ss_pred eccCCCeEEEEECCC
Q psy4876 486 GGTADRHIYFWNVSS 500 (609)
Q Consensus 486 gGs~Dg~I~iwd~~t 500 (609)
..|.|.--.+..
T Consensus 320 ---r~GqVl~v~v~e 331 (494)
T 1bpo_A 320 ---RKGQVLSVCVEE 331 (494)
T ss_dssp ---TTCEEEEEEECT
T ss_pred ---cCceEEEEEEcc
Confidence 455555444443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.02 Score=56.75 Aligned_cols=218 Identities=14% Similarity=0.155 Sum_probs=112.4
Q ss_pred CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEEEEEeCC-----CeEEEE
Q psy4876 289 GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYMLGVGTSL-----GTVQLW 362 (609)
Q Consensus 289 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~d-----g~I~iw 362 (609)
..+.+||..+ .....+..+. .......+. -++..++.|+.+ ..+.+|
T Consensus 31 ~~~~~~d~~~-------------------------~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~ 83 (301)
T 2vpj_A 31 DVVEKYDPKT-------------------------QEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECL 83 (301)
T ss_dssp CCEEEEETTT-------------------------TEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEE
T ss_pred eEEEEEcCCC-------------------------CeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEE
Confidence 4788899887 5555544443 222222222 356677777754 368999
Q ss_pred eCCCCe---e--EEEecCCCCceEEEEecCCEEEEEecCC-----eEEEEEcCCCCe-eEEEEccCCCCeEEEEEccCCC
Q psy4876 363 DVSAKK---K--CRTMDGHDVRVGALAWNTYILSSGSRCG-----NIVHHDVRSRDH-KVALLQNHTQEVCGLKWSPDGR 431 (609)
Q Consensus 363 d~~~~~---~--~~~l~~h~~~V~~l~~~~~~L~sgs~dg-----~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spdg~ 431 (609)
|..+.+ - +..+.........+..++.+++.|+.++ .+.+||+.+..- .+..+.........+. -+++
T Consensus 84 d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~ 161 (301)
T 2vpj_A 84 DYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGV 161 (301)
T ss_dssp ETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTE
T ss_pred ECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCE
Confidence 988755 2 2222222233344455788888887543 588899877531 1222221111112222 2677
Q ss_pred EEEEEeCC-----CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC---CCeEEEEECCCCce
Q psy4876 432 YLASGGND-----NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA---DRHIYFWNVSSGAC 503 (609)
Q Consensus 432 ~lasgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~---Dg~I~iwd~~t~~~ 503 (609)
+++.|+.+ ..+.+||+.+..- ..+..+........++.+ +..+++.||... ...+.+||+.+.+-
T Consensus 162 iyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 234 (301)
T 2vpj_A 162 IYCLGGYDGLNILNSVEKYDPHTGHW----TNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEE----EEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred EEEECCCCCCcccceEEEEeCCCCcE----EeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence 77777754 4688999887521 112112111111223333 346777775221 35689999987754
Q ss_pred eEEEcCC--C-CeEEEEEcCCCCeEEEEEecCC----CeEEEEECCCCc
Q psy4876 504 LDSIDTK--S-QVCALLWNSDYKELVSAHGFAQ----NQLIIWKYPSLV 545 (609)
Q Consensus 504 ~~~~~~~--~-~v~sl~~s~~g~~l~~~sG~~d----g~I~Iwd~~~~~ 545 (609)
...-... . ....+.+ +++ |++..|... +.|.+||..+.+
T Consensus 235 ~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 235 TTVTSMTTPRCYVGATVL--RGR-LYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EECCCCCCcccceeEEEE--CCE-EEEEcCcCCCcccccEEEEcCCCCe
Confidence 3322111 1 1122222 444 444434322 457888876543
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.02 Score=57.04 Aligned_cols=226 Identities=8% Similarity=0.072 Sum_probs=115.0
Q ss_pred EEEEEeC--CCeEEEEeCCCCeeEE--EecCCCCceEEEEecCCEEEEEecC----CeEEEEEcCCCCee-EEEEccCCC
Q psy4876 349 MLGVGTS--LGTVQLWDVSAKKKCR--TMDGHDVRVGALAWNTYILSSGSRC----GNIVHHDVRSRDHK-VALLQNHTQ 419 (609)
Q Consensus 349 ~Lasgs~--dg~I~iwd~~~~~~~~--~l~~h~~~V~~l~~~~~~L~sgs~d----g~I~iwd~~~~~~~-~~~~~~h~~ 419 (609)
+++.|+. ...+.+||..+++-.. .+.........+..++.+++.|+.+ ..+.+||..+..-. +..+.....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 93 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD 93 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc
Confidence 4445554 3578999998765332 2222223334455678888888765 56888998876311 111111111
Q ss_pred CeEEEEEccCCCEEEEEeCC------CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC----
Q psy4876 420 EVCGLKWSPDGRYLASGGND------NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA---- 489 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~D------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~---- 489 (609)
....+. -++.+++.|+.+ ..+.+||..+..- ..+..+........++.+ +..+++.||...
T Consensus 94 ~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~ 164 (306)
T 3ii7_A 94 SLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESW----HTKPSMLTQRCSHGMVEA---NGLIYVCGGSLGNNVS 164 (306)
T ss_dssp SCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEE----EEECCCSSCCBSCEEEEE---TTEEEEECCEESCTTT
T ss_pred ceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCce----EeCCCCcCCcceeEEEEE---CCEEEEECCCCCCCCc
Confidence 112222 267777888765 4689999887521 111111111111122222 336777765221
Q ss_pred ---CCeEEEEECCCCceeEEEcCCC--CeEEEEEcCCCCeEEEEEecCC----CeEEEEECCCCce--EEEEeCCCCCEE
Q psy4876 490 ---DRHIYFWNVSSGACLDSIDTKS--QVCALLWNSDYKELVSAHGFAQ----NQLIIWKYPSLVK--VAELHGHSARVL 558 (609)
Q Consensus 490 ---Dg~I~iwd~~t~~~~~~~~~~~--~v~sl~~s~~g~~l~~~sG~~d----g~I~Iwd~~~~~~--~~~l~~h~~~V~ 558 (609)
-..+.+||+.+.+-...-.... .-.+++.. +++ |++..|... ..+.+||..+.+- +..+........
T Consensus 165 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 242 (306)
T 3ii7_A 165 GRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDK-IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVK 242 (306)
T ss_dssp CEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE-EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCE
T ss_pred ccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCE-EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcccee
Confidence 3558899998775332211111 11122222 444 444434322 4688999876532 222211111222
Q ss_pred EEEEeCCCCEEEEEECC-----CCEEEEEcCCCc
Q psy4876 559 NLAMSPDETTVLSAGAD-----ETLRLWKIFEKV 587 (609)
Q Consensus 559 ~l~~spdg~~L~s~s~D-----g~I~iWdl~~~~ 587 (609)
.+.+ ++.+++.|+.+ ..|.+||+.+..
T Consensus 243 ~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 243 CAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 2333 67788888754 457888887644
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.084 Score=56.56 Aligned_cols=311 Identities=12% Similarity=0.079 Sum_probs=178.8
Q ss_pred cccccCCccCCceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeee---eec-
Q psy4876 258 DRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLM---DLE- 333 (609)
Q Consensus 258 ~~il~ap~~~~~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~- 333 (609)
.+...+|+-.|+|| ++.++|..|.|+|+-+-+....+++-.|+++...-+.... .....+. .+.
T Consensus 58 ~k~~v~pG~~Deyy---------~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~---esk~il~~~~~~~~ 125 (638)
T 3sbq_A 58 QKIHVGPGELDDYY---------GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTN---ESRHIMGDSAKFLN 125 (638)
T ss_dssp CCCCCCTTCCCSEE---------EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBH---HHHHHHGGGGGCCC
T ss_pred cccccCCCCcccEE---------EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCch---hHHHHHhcCCCccC
Confidence 45566778888888 3466888999999999988888888888887665554321 0000010 111
Q ss_pred CCCCeEEEEEc---cCCCEEEEEe-CCCeEEEEeCCCCeeEEEecC-CCCceEEEEe----cCCEEEEEec-------CC
Q psy4876 334 GNENVCSVAWI---QEGYMLGVGT-SLGTVQLWDVSAKKKCRTMDG-HDVRVGALAW----NTYILSSGSR-------CG 397 (609)
Q Consensus 334 h~~~V~~v~~s---pdg~~Lasgs-~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~----~~~~L~sgs~-------dg 397 (609)
.+..-..+++. -||++|++-. .+..|-..++...++-+.+.- ....+..+.| +..+++++++ ||
T Consensus 126 gD~HHp~~S~tdg~yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg 205 (638)
T 3sbq_A 126 GDCHHPHISMTDGKYDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDG 205 (638)
T ss_dssp CCCCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSS
T ss_pred CCcCCCcccccCCeeeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCC
Confidence 11112234443 2678888876 456788889988877665543 4556777776 3456776664 33
Q ss_pred eEE------------EEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCC---------------cEEEEeCC--
Q psy4876 398 NIV------------HHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDN---------------LLNIWSGV-- 448 (609)
Q Consensus 398 ~I~------------iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg---------------~I~iwd~~-- 448 (609)
... ..|..+.+...+.+- .+....+...++|.|.++.+... .|.++++.
T Consensus 206 ~~~~~~~~~~y~~f~~iD~~tm~v~~Qv~v--~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~i 283 (638)
T 3sbq_A 206 KVFDLQDENSYTMYNAIDAETMEMAFQVIV--DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAV 283 (638)
T ss_dssp SCCCTTSTTEEEEEEEEETTTCSEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHH
T ss_pred cccccCChhhceEEEEEcCCccEEEEEEEc--CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHH
Confidence 311 112222211111111 12333455677888877765421 24455432
Q ss_pred -----CCCCCC-C--ccceEeec-------------CCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC------C
Q psy4876 449 -----PGQHTF-S--TQPIHSLS-------------RHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS------G 501 (609)
Q Consensus 449 -----~~~~~~-~--~~~~~~~~-------------~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t------~ 501 (609)
.++... . ..++.... .-......+..+|||++++++| -.+.++.++|++. +
T Consensus 284 e~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~G--KLsptvtV~d~~k~~~~~~~ 361 (638)
T 3sbq_A 284 EAAVKAGDFITLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAG--KLSPTCSMIAIDKLPDLFAG 361 (638)
T ss_dssp HHHHHTTCCBCCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEEC--TTSSBEEEEEGGGHHHHHTT
T ss_pred HHHHhcCCeEEECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcC--CCCCeEEEEEeehhhhhhhc
Confidence 111000 0 01111111 1112234678899998888876 4899999999873 1
Q ss_pred ce-------eEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC----------ceEEEEeCCCCCEEEEEE--
Q psy4876 502 AC-------LDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL----------VKVAELHGHSARVLNLAM-- 562 (609)
Q Consensus 502 ~~-------~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~----------~~~~~l~~h~~~V~~l~~-- 562 (609)
+. +...+..-.....+|.++| ..++ +-+-|.+|..|++... ..+..+.-|-. +-++.-
T Consensus 362 k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYT-tlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~ 438 (638)
T 3sbq_A 362 KLADPRDVIVGEPELGLGPLHTTFDGRG-NAYT-TLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASL 438 (638)
T ss_dssp CCSCGGGGEEECCBCCSCEEEEEECSSS-EEEE-EETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETT
T ss_pred cccCcccceEeeccCCCcccEEEECCCC-ceEe-eeeecceEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCC
Confidence 21 3444556678899999999 3333 3578999999998542 34555555543 223332
Q ss_pred ----eCCCCEEEEEEC---CCCE----------EEEEcCCCc
Q psy4876 563 ----SPDETTVLSAGA---DETL----------RLWKIFEKV 587 (609)
Q Consensus 563 ----spdg~~L~s~s~---Dg~I----------~iWdl~~~~ 587 (609)
.+||++|++... |..+ .+.|+...+
T Consensus 439 get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 439 CETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp TTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred CccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCc
Confidence 568888888753 5443 566665543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00098 Score=75.33 Aligned_cols=224 Identities=9% Similarity=-0.056 Sum_probs=129.3
Q ss_pred CCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEE-ecCCeEEEEEcCCC---CeeEEEEccCCCCeEEEEEccC
Q psy4876 356 LGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSG-SRCGNIVHHDVRSR---DHKVALLQNHTQEVCGLKWSPD 429 (609)
Q Consensus 356 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sg-s~dg~I~iwd~~~~---~~~~~~~~~h~~~V~~l~~spd 429 (609)
.+.|++.++........+. ....+..|+|+ ...|+.+ ...+.|+.+++... ......+........+|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 3578888887655443333 23455677884 3444444 45678999988751 1111112112233567888864
Q ss_pred -CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEE-
Q psy4876 430 -GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI- 507 (609)
Q Consensus 430 -g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~- 507 (609)
++++++-...+.|.++++... .....+.........|+++|.+..|+++..+ ..+.|.++++.... ...+
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~------~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~-~~~l~ 535 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGV------KRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVD-IYSLV 535 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSC------CEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCC-CCEES
T ss_pred CCcEEEEeccCCeEEEEecCCC------ceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCC-eeEEE
Confidence 444444455678999998754 2222222223445788999987777776421 23678888775332 2222
Q ss_pred c-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC--CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 508 D-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG--HSARVLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 508 ~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
. .-.....|+|++++..|+++- ...+.|.++++........+.. .......|++..+ .++++....+.|..++..
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD-~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVD-SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL 613 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEE-TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETT
T ss_pred eCCCCCccEEEEeccCCEEEEEe-cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEcc
Confidence 2 223577899999988887764 4678899999864333222221 1223445666543 344455566889999877
Q ss_pred CCccch
Q psy4876 585 EKVKSK 590 (609)
Q Consensus 585 ~~~~~~ 590 (609)
++....
T Consensus 614 ~G~~~~ 619 (699)
T 1n7d_A 614 TGSDVN 619 (699)
T ss_dssp TEEEEE
T ss_pred CCCceE
Confidence 665443
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.028 Score=55.77 Aligned_cols=187 Identities=15% Similarity=0.179 Sum_probs=95.0
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeEEE--ecCCCCceEEEEecCCEEEEEecCC-----eEEEEEcCCCCeeEEE
Q psy4876 346 EGYMLGVGTSL-----GTVQLWDVSAKKKCRT--MDGHDVRVGALAWNTYILSSGSRCG-----NIVHHDVRSRDHKVAL 413 (609)
Q Consensus 346 dg~~Lasgs~d-----g~I~iwd~~~~~~~~~--l~~h~~~V~~l~~~~~~L~sgs~dg-----~I~iwd~~~~~~~~~~ 413 (609)
++..++.|+.+ ..+.+||..+.+-... +.........+.+++.+++.|+.++ .+.+||+.+.. -..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE--WFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTE--EEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCe--Eee
Confidence 56677777654 3588999887653322 2222233344556888888888664 47788887653 122
Q ss_pred EccC--CCCeEEEEEccCCCEEEEEeCC-------CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 414 LQNH--TQEVCGLKWSPDGRYLASGGND-------NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 414 ~~~h--~~~V~~l~~spdg~~lasgs~D-------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
+... ...-.+++. -++++++.|+.+ ..+.+||+.+..- ..+..+.........+.+ +..+++.
T Consensus 139 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~---~~~iyv~ 210 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEW----TYIAEMSTRRSGAGVGVL---NNLLYAV 210 (302)
T ss_dssp ECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEE----EEECCCSSCCBSCEEEEE---TTEEEEE
T ss_pred cCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcE----EECCCCccccccccEEEE---CCEEEEE
Confidence 2111 111112222 256677777643 3588999886521 111112111111222333 3467777
Q ss_pred EeccC---CCeEEEEECCCCceeEEEcCCC---CeEEEEEcCCCCeEEEEEecCC----CeEEEEECCCCc
Q psy4876 485 GGGTA---DRHIYFWNVSSGACLDSIDTKS---QVCALLWNSDYKELVSAHGFAQ----NQLIIWKYPSLV 545 (609)
Q Consensus 485 ggGs~---Dg~I~iwd~~t~~~~~~~~~~~---~v~sl~~s~~g~~l~~~sG~~d----g~I~Iwd~~~~~ 545 (609)
||... ...+.+||+.+.+-...-.... ....+.+ +++ |++..|... ..+.+||..+.+
T Consensus 211 GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 211 GGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGL-LYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCE-EEEECCcCCCcccccEEEEcCCCCe
Confidence 75211 2468999998765432221111 1112222 344 444434322 348888877654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.043 Score=55.36 Aligned_cols=163 Identities=7% Similarity=0.078 Sum_probs=107.9
Q ss_pred EccCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCCCccceEeecC----C--cccEEEEEE---cCCCCcEEE
Q psy4876 414 LQNHTQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVPGQHTFSTQPIHSLSR----H--QAAVKAIAW---CPWSPNVLA 483 (609)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~----h--~~~V~~l~~---sp~~~~lla 483 (609)
+........+++|++....|..++ ..+.|..||...+.. ..+ .+.+ . ...+..|.| .|++ .|++
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~----~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~v 81 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH----FNV-VIDGASSNGDGEQQMSGLSLLTHDNSK-RLFA 81 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCE----EEE-CCTTTCCSSCCSEEEEEEEESSSSSCC-EEEE
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE----EEE-ecCCccccCCCcceeeEEEEeccCCCC-cEEE
Confidence 334444556789998655666665 689999999875421 111 2221 1 114589999 6875 5665
Q ss_pred EEe-c----------cCCCeEEEEECC---CCceeEEEcCC--------------CCeEEEEEcCCCCeEEEEEecCC-C
Q psy4876 484 SGG-G----------TADRHIYFWNVS---SGACLDSIDTK--------------SQVCALLWNSDYKELVSAHGFAQ-N 534 (609)
Q Consensus 484 sgg-G----------s~Dg~I~iwd~~---t~~~~~~~~~~--------------~~v~sl~~s~~g~~l~~~sG~~d-g 534 (609)
+.. | +.+..|..||+. +++.+...... .....++..++|+..++.+ .. +
T Consensus 82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s--~~~~ 159 (334)
T 2p9w_A 82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA--LGMP 159 (334)
T ss_dssp EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE--ESSC
T ss_pred EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC--CCCC
Confidence 431 0 126889999999 88877666421 2478999999999988744 45 6
Q ss_pred eEEEEECCCCceEEEEe-C-----CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 535 QLIIWKYPSLVKVAELH-G-----HSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 535 ~I~Iwd~~~~~~~~~l~-~-----h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
.|..++.... .+..+. . .....+.|+++|||.+|++...+|.|.-+|+..
T Consensus 160 ~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 160 AIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 7776665433 333221 1 112367999999999999887799999999884
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.022 Score=56.63 Aligned_cols=224 Identities=11% Similarity=0.129 Sum_probs=112.6
Q ss_pred CEEEEEeCC----CeEEEEeCCCCeeEEE--ecCCCCceEEEEecCCEEEEEecCC-----eEEEEEcCCCCeeEEEEcc
Q psy4876 348 YMLGVGTSL----GTVQLWDVSAKKKCRT--MDGHDVRVGALAWNTYILSSGSRCG-----NIVHHDVRSRDHKVALLQN 416 (609)
Q Consensus 348 ~~Lasgs~d----g~I~iwd~~~~~~~~~--l~~h~~~V~~l~~~~~~L~sgs~dg-----~I~iwd~~~~~~~~~~~~~ 416 (609)
..++.|+.+ ..+.+||..+.+-... +......-..+..++.+++.|+.++ .+.+||..+.. -..+..
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQ--WTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTE--EEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCc--eeeCCC
Confidence 344555533 3588899887653322 2222222234455778888887653 58889987753 222211
Q ss_pred ---CCCCeEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEecc
Q psy4876 417 ---HTQEVCGLKWSPDGRYLASGGNDN-----LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGT 488 (609)
Q Consensus 417 ---h~~~V~~l~~spdg~~lasgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs 488 (609)
.......+. -++.+++.|+.++ .+.+||+.+..- ..+..+........++.+ +..+++.||..
T Consensus 95 ~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~ 165 (302)
T 2xn4_A 95 MRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEW----FHVAPMNTRRSSVGVGVV---GGLLYAVGGYD 165 (302)
T ss_dssp CSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEE----EEECCCSSCCBSCEEEEE---TTEEEEECCEE
T ss_pred CCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeE----eecCCCCCcccCceEEEE---CCEEEEEeCCC
Confidence 111112222 2677778887653 588899876521 111112111111222222 34677776521
Q ss_pred C-----CCeEEEEECCCCceeEEEcCC--C-CeEEEEEcCCCCeEEEEEecC----CCeEEEEECCCCceEE--EEeCCC
Q psy4876 489 A-----DRHIYFWNVSSGACLDSIDTK--S-QVCALLWNSDYKELVSAHGFA----QNQLIIWKYPSLVKVA--ELHGHS 554 (609)
Q Consensus 489 ~-----Dg~I~iwd~~t~~~~~~~~~~--~-~v~sl~~s~~g~~l~~~sG~~----dg~I~Iwd~~~~~~~~--~l~~h~ 554 (609)
. -..+.+||+.+.+-...-... . ....+.+ ++ .|++..|.. .+.+.+||..+.+-.. .+....
T Consensus 166 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r 242 (302)
T 2xn4_A 166 VASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NN-LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCR 242 (302)
T ss_dssp TTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred CCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CC-EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcc
Confidence 1 245889999876533321111 1 1222222 34 444443432 2468999987654322 111111
Q ss_pred CCEEEEEEeCCCCEEEEEECCC-----CEEEEEcCCCc
Q psy4876 555 ARVLNLAMSPDETTVLSAGADE-----TLRLWKIFEKV 587 (609)
Q Consensus 555 ~~V~~l~~spdg~~L~s~s~Dg-----~I~iWdl~~~~ 587 (609)
.....+ .-++.+++.|+.++ .|.+||+.+..
T Consensus 243 ~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 243 RNAGVC--AVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp BSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ccCeEE--EECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 111122 22677777877654 48888887654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.083 Score=54.10 Aligned_cols=219 Identities=10% Similarity=0.123 Sum_probs=122.9
Q ss_pred CeEEEEEccCCCEEEEE------------eCCCeEEEEeCCCC-eeEEE--ecC-----CCCceEEEEe----cCC--EE
Q psy4876 337 NVCSVAWIQEGYMLGVG------------TSLGTVQLWDVSAK-KKCRT--MDG-----HDVRVGALAW----NTY--IL 390 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasg------------s~dg~I~iwd~~~~-~~~~~--l~~-----h~~~V~~l~~----~~~--~L 390 (609)
...++...++|..++++ ..+|.|.++|..+. ..... +.+ ..-....|.+ ++. ++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566777877544443 26899999998742 11122 222 2235566665 232 33
Q ss_pred EEEec--CCeEEEEEcCCCCee---EEEEccC-CCCeEEEEEccCCCEEEEEe-----------------CCCcEEEEeC
Q psy4876 391 SSGSR--CGNIVHHDVRSRDHK---VALLQNH-TQEVCGLKWSPDGRYLASGG-----------------NDNLLNIWSG 447 (609)
Q Consensus 391 ~sgs~--dg~I~iwd~~~~~~~---~~~~~~h-~~~V~~l~~spdg~~lasgs-----------------~Dg~I~iwd~ 447 (609)
++-.. +..|.+|++...... +..+.+. -...+.+++.++|.+.++.. ..|.|+.+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 33333 467788877654322 2233322 24578999999998777654 1245555554
Q ss_pred CCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC-Cce--eEEEcCCCCeEEEEEcC-CCC
Q psy4876 448 VPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS-GAC--LDSIDTKSQVCALLWNS-DYK 523 (609)
Q Consensus 448 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t-~~~--~~~~~~~~~v~sl~~s~-~g~ 523 (609)
+ + +..+...-..-+.++|+|+++.++++- +..+.|..|++.. +.. ...+......-.+++.+ +|.
T Consensus 211 --~------~-~~~~~~~l~~pNGia~spDg~~lYvad--t~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 211 --N------D-VRVVAEGFDFANGINISPDGKYVYIAE--LLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGD 279 (355)
T ss_dssp --T------C-CEEEEEEESSEEEEEECTTSSEEEEEE--GGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCC
T ss_pred --C------e-EEEeecCCcccCcceECCCCCEEEEEe--CCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCc
Confidence 2 1 122222334568999999998888876 4678999999863 432 23444456778899999 588
Q ss_pred eEEEEEecCCCeEEEEECC--CCceEEEEeC---CCCCEEEEEEeCCCCE
Q psy4876 524 ELVSAHGFAQNQLIIWKYP--SLVKVAELHG---HSARVLNLAMSPDETT 568 (609)
Q Consensus 524 ~l~~~sG~~dg~I~Iwd~~--~~~~~~~l~~---h~~~V~~l~~spdg~~ 568 (609)
+.+++. ...+.|..|+.. .+..+..+.. -...|..+ |..||+.
T Consensus 280 lwva~~-~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v-~~ddG~~ 327 (355)
T 3sre_A 280 LWVGCH-PNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVV-YAENGTV 327 (355)
T ss_dssp EEEEEE-SCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEE-EEECSSS
T ss_pred EEEEec-CCceEEEEECCCCCCCCEEEEEEccCCCCcEEEEE-EEcCCCE
Confidence 777653 122334444432 2444544442 22334444 4446653
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.044 Score=54.70 Aligned_cols=149 Identities=14% Similarity=0.162 Sum_probs=78.8
Q ss_pred CCCEEEEEeC----C-----CeEEEEeCCCCeeEE--EecCCCCceEEEEecCCEEEEEecC-----CeEEEEEcCCCCe
Q psy4876 346 EGYMLGVGTS----L-----GTVQLWDVSAKKKCR--TMDGHDVRVGALAWNTYILSSGSRC-----GNIVHHDVRSRDH 409 (609)
Q Consensus 346 dg~~Lasgs~----d-----g~I~iwd~~~~~~~~--~l~~h~~~V~~l~~~~~~L~sgs~d-----g~I~iwd~~~~~~ 409 (609)
++..++.|+. + ..+.+||..+.+-.. .+.........+.+++.+++.|+.+ ..+.+||+.+..-
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 149 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW 149 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeE
Confidence 5666666665 2 358899988765322 2222223334455578888887754 3578889876531
Q ss_pred e-EEEEccCCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEE
Q psy4876 410 K-VALLQNHTQEVCGLKWSPDGRYLASGGND-----NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 410 ~-~~~~~~h~~~V~~l~~spdg~~lasgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla 483 (609)
. +..+.........+.+ ++.+++.|+.+ ..+.+||+.+..- ..+..+........++.+ +..+++
T Consensus 150 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~---~~~iyv 220 (308)
T 1zgk_A 150 HLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW----RMITAMNTIRSGAGVCVL---HNCIYA 220 (308)
T ss_dssp EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE----EECCCCSSCCBSCEEEEE---TTEEEE
T ss_pred eECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE----eeCCCCCCccccceEEEE---CCEEEE
Confidence 1 1111111111122222 67777777754 4689999876521 111111111112223333 346777
Q ss_pred EEeccC---CCeEEEEECCCCce
Q psy4876 484 SGGGTA---DRHIYFWNVSSGAC 503 (609)
Q Consensus 484 sggGs~---Dg~I~iwd~~t~~~ 503 (609)
.||... -..+.+||+.+.+-
T Consensus 221 ~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 221 AGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEE
T ss_pred EeCCCCCCccceEEEEeCCCCcE
Confidence 775211 25689999987653
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.11 Score=51.76 Aligned_cols=151 Identities=11% Similarity=0.054 Sum_probs=77.9
Q ss_pred ccCCCEEEEEeC-----C------CeEEEEeCCCCeeEEE--ecCCCCceEEEEecCCEEEEEecC--------CeEEEE
Q psy4876 344 IQEGYMLGVGTS-----L------GTVQLWDVSAKKKCRT--MDGHDVRVGALAWNTYILSSGSRC--------GNIVHH 402 (609)
Q Consensus 344 spdg~~Lasgs~-----d------g~I~iwd~~~~~~~~~--l~~h~~~V~~l~~~~~~L~sgs~d--------g~I~iw 402 (609)
..++..++.|+. . ..+.+||..+.+-... +.........+.+++.+++.|+.+ ..+.+|
T Consensus 43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 122 (315)
T 4asc_A 43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCY 122 (315)
T ss_dssp CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEE
T ss_pred EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEE
Confidence 346777777773 1 1378889887653221 211112223344577788887743 358889
Q ss_pred EcCCCCe-eEEEEccCCCCeEEEEEccCCCEEEEEeC-C-----CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEc
Q psy4876 403 DVRSRDH-KVALLQNHTQEVCGLKWSPDGRYLASGGN-D-----NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWC 475 (609)
Q Consensus 403 d~~~~~~-~~~~~~~h~~~V~~l~~spdg~~lasgs~-D-----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 475 (609)
|..+..- .+..+....... +++. -++++++.|+. + ..+.+||..+..- ..+..+........++.+
T Consensus 123 d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~- 195 (315)
T 4asc_A 123 DRLSFKWGESDPLPYVVYGH-TVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW----KELAPMQTARSLFGATVH- 195 (315)
T ss_dssp ETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEE----EECCCCSSCCBSCEEEEE-
T ss_pred CCCCCcEeECCCCCCcccce-eEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeE----EECCCCCCchhceEEEEE-
Confidence 9887531 111111111111 1222 35677777776 2 4689999886521 111111111111222333
Q ss_pred CCCCcEEEEEeccCC---CeEEEEECCCCce
Q psy4876 476 PWSPNVLASGGGTAD---RHIYFWNVSSGAC 503 (609)
Q Consensus 476 p~~~~llasggGs~D---g~I~iwd~~t~~~ 503 (609)
+..+++.||...+ ..+.+||+.+.+-
T Consensus 196 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 196 --DGRIIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp --TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred --CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence 3467777762222 2688999987653
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.73 Score=48.77 Aligned_cols=103 Identities=9% Similarity=0.055 Sum_probs=61.4
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCee--EEEecC------CCCceEEEEec-----CCEEEEEec-------
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKK--CRTMDG------HDVRVGALAWN-----TYILSSGSR------- 395 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~--~~~l~~------h~~~V~~l~~~-----~~~L~sgs~------- 395 (609)
....+|+|.|+|+++++-...+.|.+++..+++. +..+.. .......|+|+ +..|+....
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 4678999999998776544434798888655543 222321 24567789996 445554432
Q ss_pred ------CCeEEEEEcCCCC------eeEE-EEc-cCCCCeEEEEEccCCCEEEEEeC
Q psy4876 396 ------CGNIVHHDVRSRD------HKVA-LLQ-NHTQEVCGLKWSPDGRYLASGGN 438 (609)
Q Consensus 396 ------dg~I~iwd~~~~~------~~~~-~~~-~h~~~V~~l~~spdg~~lasgs~ 438 (609)
...|.-+++.... ..+. .+. ........|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 2356666654321 1111 122 11235789999999987776553
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.23 Score=49.52 Aligned_cols=151 Identities=13% Similarity=0.130 Sum_probs=78.1
Q ss_pred EccCCCEEEEEeC----CC-------eEEEEeCCCCeeEEE--ecCCCCceEEEEecCCEEEEEecC-------CeEEEE
Q psy4876 343 WIQEGYMLGVGTS----LG-------TVQLWDVSAKKKCRT--MDGHDVRVGALAWNTYILSSGSRC-------GNIVHH 402 (609)
Q Consensus 343 ~spdg~~Lasgs~----dg-------~I~iwd~~~~~~~~~--l~~h~~~V~~l~~~~~~L~sgs~d-------g~I~iw 402 (609)
...++..++.|+. ++ .+.+||..+.+-... +.........+.+++.+++.|+.+ ..+.+|
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~y 132 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCY 132 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEE
Confidence 3456777777873 12 277889877653322 222222234445578888888864 247788
Q ss_pred EcCCCCeeEEEEccCCCCe--EEEEEccCCCEEEEEeC------CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEE
Q psy4876 403 DVRSRDHKVALLQNHTQEV--CGLKWSPDGRYLASGGN------DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAW 474 (609)
Q Consensus 403 d~~~~~~~~~~~~~h~~~V--~~l~~spdg~~lasgs~------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 474 (609)
|..+.. -..+....... .+++. .++.+++.|+. -..+.+||+.+..- ..+..+........++.+
T Consensus 133 d~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~ 205 (318)
T 2woz_A 133 DPVAAK--WSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW----KDLAPMKTPRSMFGVAIH 205 (318)
T ss_dssp ETTTTE--EEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEE----EEECCCSSCCBSCEEEEE
T ss_pred eCCCCC--EeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEE----EECCCCCCCcccceEEEE
Confidence 887653 12221111111 11222 46777777764 24589999887521 111111111111222332
Q ss_pred cCCCCcEEEEEeccCC---CeEEEEECCCCce
Q psy4876 475 CPWSPNVLASGGGTAD---RHIYFWNVSSGAC 503 (609)
Q Consensus 475 sp~~~~llasggGs~D---g~I~iwd~~t~~~ 503 (609)
+..+++.||...+ ..+.+||+.+.+-
T Consensus 206 ---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 206 ---KGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp ---TTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred ---CCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 3467777753222 4577899887653
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.42 Score=48.85 Aligned_cols=174 Identities=11% Similarity=0.126 Sum_probs=104.0
Q ss_pred cCCeEEEEEcCCCCeeEE--EEcc-----CCCCeEEEEEcc--CCC-EEEEE-eC--CCcEEEEeCCCCCCCCCccceEe
Q psy4876 395 RCGNIVHHDVRSRDHKVA--LLQN-----HTQEVCGLKWSP--DGR-YLASG-GN--DNLLNIWSGVPGQHTFSTQPIHS 461 (609)
Q Consensus 395 ~dg~I~iwd~~~~~~~~~--~~~~-----h~~~V~~l~~sp--dg~-~lasg-s~--Dg~I~iwd~~~~~~~~~~~~~~~ 461 (609)
.+|.|.++|..+...... .+.+ ......+|.+.+ +|. +|+++ .. +..|.+|++..... ....+..
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~--~~~~~~~ 158 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK--SLLHLKT 158 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT--EEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC--EEEEEec
Confidence 689999999874321222 2222 234677888866 454 34444 33 45788887765421 1133344
Q ss_pred ecCC-cccEEEEEEcCCCCcEEEEEec---------------cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeE
Q psy4876 462 LSRH-QAAVKAIAWCPWSPNVLASGGG---------------TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKEL 525 (609)
Q Consensus 462 ~~~h-~~~V~~l~~sp~~~~llasggG---------------s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l 525 (609)
+.+. -...+.+.+.++|. ++++... ...+.|+.+|. +++......-.....++|+||++.+
T Consensus 159 ~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~l 235 (355)
T 3sre_A 159 IRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYV 235 (355)
T ss_dssp ECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEE
T ss_pred cccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEE
Confidence 4432 23578999999884 5554320 01355666665 3433333344578999999999999
Q ss_pred EEEEecCCCeEEEEECCC-Cce--EEEEeCCCCCEEEEEEeC-CCCEEEEEECC
Q psy4876 526 VSAHGFAQNQLIIWKYPS-LVK--VAELHGHSARVLNLAMSP-DETTVLSAGAD 575 (609)
Q Consensus 526 ~~~sG~~dg~I~Iwd~~~-~~~--~~~l~~h~~~V~~l~~sp-dg~~L~s~s~D 575 (609)
+++. +..+.|..|++.. +.. ...+ ...+..-.+++.+ +|.+.+++..+
T Consensus 236 Yvad-t~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 236 YIAE-LLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEE-GGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred EEEe-CCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 8874 3678999999853 322 2233 2245677889999 59877766544
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.061 Score=53.59 Aligned_cols=226 Identities=9% Similarity=0.050 Sum_probs=112.7
Q ss_pred CCCEEEEEeCC----CeEEEEeCCCCeeEEE--ecCCCCceEEEEecCCEEEEEec----C-----CeEEEEEcCCCCee
Q psy4876 346 EGYMLGVGTSL----GTVQLWDVSAKKKCRT--MDGHDVRVGALAWNTYILSSGSR----C-----GNIVHHDVRSRDHK 410 (609)
Q Consensus 346 dg~~Lasgs~d----g~I~iwd~~~~~~~~~--l~~h~~~V~~l~~~~~~L~sgs~----d-----g~I~iwd~~~~~~~ 410 (609)
++..++.|+.+ ..+.+||..+.+-... +.........+..++.+++.|+. + ..+.+||+.+..
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~-- 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ-- 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTE--
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCe--
Confidence 45666666632 3689999887653322 22111222344457788888776 3 357888887653
Q ss_pred EEEEc---cCCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEE
Q psy4876 411 VALLQ---NHTQEVCGLKWSPDGRYLASGGND-----NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 411 ~~~~~---~h~~~V~~l~~spdg~~lasgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 482 (609)
-..+. ........+.+ ++++++.|+.+ ..+.+||+.+..- ..+..+........++.+ +..++
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~---~~~iy 172 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW----HLVAPMLTRRIGVGVAVL---NRLLY 172 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEE----EECCCCSSCCBSCEEEEE---TTEEE
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeE----eECCCCCccccceEEEEE---CCEEE
Confidence 11111 11111222222 67777777643 4688999886521 111111111111222333 34677
Q ss_pred EEEeccC---CCeEEEEECCCCceeEEEc--CCC-CeEEEEEcCCCCeEEEEEecC----CCeEEEEECCCCceEE--EE
Q psy4876 483 ASGGGTA---DRHIYFWNVSSGACLDSID--TKS-QVCALLWNSDYKELVSAHGFA----QNQLIIWKYPSLVKVA--EL 550 (609)
Q Consensus 483 asggGs~---Dg~I~iwd~~t~~~~~~~~--~~~-~v~sl~~s~~g~~l~~~sG~~----dg~I~Iwd~~~~~~~~--~l 550 (609)
+.||... -..+.+||+.+.+-...-. ... ....+.+ ++ .|++..|.. .+.+.+||..+.+-.. .+
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 249 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence 7775211 2568999988765332211 111 1222222 34 444443432 2568999987654322 11
Q ss_pred eCCCCCEEEEEEeCCCCEEEEEECC-----CCEEEEEcCCCc
Q psy4876 551 HGHSARVLNLAMSPDETTVLSAGAD-----ETLRLWKIFEKV 587 (609)
Q Consensus 551 ~~h~~~V~~l~~spdg~~L~s~s~D-----g~I~iWdl~~~~ 587 (609)
.........+. -++++++.|+.+ ..|.+||+.+..
T Consensus 250 p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 250 KHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp SSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 11111112222 267777777754 356788876643
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.76 Score=46.71 Aligned_cols=233 Identities=15% Similarity=0.153 Sum_probs=126.0
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCee--EEEe----cCCCCceEEEEecC-----CEEEEE---ecCCeE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKK--CRTM----DGHDVRVGALAWNT-----YILSSG---SRCGNI 399 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~--~~~l----~~h~~~V~~l~~~~-----~~L~sg---s~dg~I 399 (609)
.-.....|+|.|+|.++++--..|.|++++...++. +..+ .........|++++ ..|+.. ..++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 456788999999998777655489999998765543 2222 12356678899953 334332 245567
Q ss_pred EEEEcCCC---------CeeE-EEEc-cCCCCeEEEEEccCCCEEEEEeC-------------CCcEEEEeCCCCC---C
Q psy4876 400 VHHDVRSR---------DHKV-ALLQ-NHTQEVCGLKWSPDGRYLASGGN-------------DNLLNIWSGVPGQ---H 452 (609)
Q Consensus 400 ~iwd~~~~---------~~~~-~~~~-~h~~~V~~l~~spdg~~lasgs~-------------Dg~I~iwd~~~~~---~ 452 (609)
.-|.+... ...+ ..+. .....-..|+|.|||.+.++.+. -|.|.-.+....- .
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 77766541 1111 1222 11223467999999987776542 2455555554210 0
Q ss_pred CCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc------------------eeEEEcCC-CCe
Q psy4876 453 TFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA------------------CLDSIDTK-SQV 513 (609)
Q Consensus 453 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~------------------~~~~~~~~-~~v 513 (609)
.+....+.. .+|.. ...++|+|++ .|+++-.| .|+.=.|--+..|. .+..+..+ ...
T Consensus 190 Pf~~~~i~a-~G~RN-p~Gla~dp~G-~L~~~d~g-~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap 265 (347)
T 3das_A 190 PFPGSPVYS-YGHRN-VQGLAWDDKQ-RLFASEFG-QDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASP 265 (347)
T ss_dssp SSTTCCEEE-BCCSB-CCEEEECTTC-CEEEEECC-SSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCE
T ss_pred CCCCCeEEe-eCCCC-cceEEECCCC-CEEEEecC-CCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCC
Confidence 000011222 24443 4589999976 56666432 23222222222221 12223222 355
Q ss_pred EEEEEcCCCCeEEEEEecCCCeEEEEECCCCce----EEEEeCCCCCEEEEEEeCCCCEEEEEE
Q psy4876 514 CALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK----VAELHGHSARVLNLAMSPDETTVLSAG 573 (609)
Q Consensus 514 ~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~L~s~s 573 (609)
..++|.. +..++. ....+.|....+..... ...+.+...++.+|+..|||.++++..
T Consensus 266 ~G~~~~~-g~~~~~--~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 266 SGIAYAE-GSVWMA--GLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEET-TEEEEE--ESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cceEEEc-Cceeec--cccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 6777763 443333 34555666656544321 223344457899999999998766654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.36 Score=48.17 Aligned_cols=213 Identities=8% Similarity=-0.037 Sum_probs=120.3
Q ss_pred ccCCCEEEEEe--CCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecC--------------CeEEEEEcCCC
Q psy4876 344 IQEGYMLGVGT--SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRC--------------GNIVHHDVRSR 407 (609)
Q Consensus 344 spdg~~Lasgs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~d--------------g~I~iwd~~~~ 407 (609)
+.+|..|+... .++.|...+.+... ...+.. ..+..+..++..|+-.... ..|+..++...
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~--~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN--DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE--EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC--CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 35677777664 24566666654333 333332 2244555567666655432 46777777765
Q ss_pred CeeEEEEccCCCCeEEEEEccCCCEEEEEe----CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEE
Q psy4876 408 DHKVALLQNHTQEVCGLKWSPDGRYLASGG----NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 408 ~~~~~~~~~h~~~V~~l~~spdg~~lasgs----~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla 483 (609)
. ...+... . +..|++++++|+... ....|+..++... ....+..+.. .+|+++++.|+.
T Consensus 99 ~--~~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-------~~~~lt~~~~----~~~~~~g~~iy~ 161 (302)
T 3s25_A 99 G--STVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-------EKKKIKNHYL----FTCNTSDRYFYY 161 (302)
T ss_dssp C--CEEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSC-------CCEEEESSCC----CCSEEETTEEEE
T ss_pred c--ceEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCC-------CeEEEeCCCc----eEeeEECCEEEE
Confidence 3 2222211 1 236788899988776 3446666777643 2333443332 456778888887
Q ss_pred EEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEe
Q psy4876 484 SGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMS 563 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~s 563 (609)
+.. ....|.+-++..+.....+. .... ..++|++.+|+.+.......|..-++..... ..|. ...+ ..|+
T Consensus 162 t~~--g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt--~~~~--~~~~ 231 (302)
T 3s25_A 162 NNP--KNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLT--EANI--EHYN 231 (302)
T ss_dssp ECT--TTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECS--CSCE--EEEE
T ss_pred EeC--CCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEe--CCCc--ceEE
Confidence 752 46788888987665443333 2222 3466999999887643335677777665443 2332 1233 3477
Q ss_pred CCCCEEEEEEC--CCCEEEEEcCCC
Q psy4876 564 PDETTVLSAGA--DETLRLWKIFEK 586 (609)
Q Consensus 564 pdg~~L~s~s~--Dg~I~iWdl~~~ 586 (609)
|++.+|+-+.. .+.|..-++...
T Consensus 232 ~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 232 VYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EETTEEEEEECSSSCEEEEEETTSC
T ss_pred ECCCEEEEEECCCCcEEEEEECCCC
Confidence 78887776533 244444455443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.46 E-value=1.7 Score=49.04 Aligned_cols=260 Identities=13% Similarity=0.148 Sum_probs=150.4
Q ss_pred eeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeee-c-CCCCeEEEEEccCC
Q psy4876 270 YYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL-E-GNENVCSVAWIQEG 347 (609)
Q Consensus 270 ~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-h~~~V~~v~~spdg 347 (609)
-.|++|.-..+|.+=.+....+..||-.. ....... . ....|.++.-..+|
T Consensus 22 n~V~~I~qD~~G~lWigT~~GL~ryDG~~---------------------------~~~~~~~~~~~~~~i~~i~~d~~g 74 (758)
T 3ott_A 22 SVVSCFLQDSEGLIWIGSNKGLFSYDGYS---------------------------TQQHFTYGENNNTRIYCGVIIDNT 74 (758)
T ss_dssp CCEEEEEECTTSCEEEEESSCEEEECSSC---------------------------EEECSCTTSTTSSCEEEEEEETTT
T ss_pred ceEEEEEECCCCCEEEEECCCccccCCCc---------------------------eEEEEccCCCCCceEEEEEEcCCC
Confidence 35788887787744444445577777432 1111000 1 24568888776665
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEc-----cCCCCeE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQ-----NHTQEVC 422 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~-----~h~~~V~ 422 (609)
.|.+|+.+| +.+||..+.+...........|.++..+...|..++.+ .|..+|..+.. ...+. .....|.
T Consensus 75 -~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~l~~~~i~ 149 (758)
T 3ott_A 75 -YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRK--LTSFDTRRNGLPNNTIY 149 (758)
T ss_dssp -EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCC--EEEECHHHHCCSCSCEE
T ss_pred -cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCe--EEEeccCCCCcCCCeEE
Confidence 566777766 78999887653321111233577666555567777766 58888887642 33331 1234688
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec--C----CcccEEEEEEcCCCCcEEEEEeccCCCeEEEE
Q psy4876 423 GLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS--R----HQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496 (609)
Q Consensus 423 ~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~--~----h~~~V~~l~~sp~~~~llasggGs~Dg~I~iw 496 (609)
++....+|.+.+ |+.+ -|..+|..++. ...+. . ....|.++....++..+.+ | + ++-|..+
T Consensus 150 ~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWi-g--t-~~Gl~~~ 216 (758)
T 3ott_A 150 SIIRTKDNQIYV-GTYN-GLCRYIPSNGK-------FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWI-G--T-EGYLFQY 216 (758)
T ss_dssp EEEECTTCCEEE-EETT-EEEEEETTTTE-------EEEECCCCCTTCSSCCEEEEEEETTTTEEEE-E--E-EEEEEEE
T ss_pred EEEEcCCCCEEE-EeCC-CHhhCccCCCc-------eEEecCCCccccccceeEEEEEECCCCEEEE-E--E-CCCCeEE
Confidence 888888887655 4544 47788876541 11111 1 1234888888776654444 2 2 3458889
Q ss_pred ECCCCceeEEEc-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC--------CCCCEEEEEEeCCCC
Q psy4876 497 NVSSGACLDSID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG--------HSARVLNLAMSPDET 567 (609)
Q Consensus 497 d~~t~~~~~~~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~--------h~~~V~~l~~spdg~ 567 (609)
|..+++...... ....|.++....+|...+. . ++-|.+++..+.... .+.. ....|.++....+|.
T Consensus 217 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig---T-~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~ 291 (758)
T 3ott_A 217 FPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG---T-DNGLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHN 291 (758)
T ss_dssp ETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE---E-TTEEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCC
T ss_pred cCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE---e-CCceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCC
Confidence 987765432211 1235778888877776654 2 356888887665432 2211 124588888887776
Q ss_pred EEEEEECCCCEEEE
Q psy4876 568 TVLSAGADETLRLW 581 (609)
Q Consensus 568 ~L~s~s~Dg~I~iW 581 (609)
+-+ |+..| |.++
T Consensus 292 lWi-GT~~G-l~~~ 303 (758)
T 3ott_A 292 IWL-GTDYG-ISLS 303 (758)
T ss_dssp EEE-EESSS-EEEE
T ss_pred EEE-EeCCc-cccc
Confidence 443 44455 5443
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.16 Score=50.60 Aligned_cols=220 Identities=10% Similarity=0.057 Sum_probs=106.5
Q ss_pred EEEEeCCCeEEEEeCCCCeeEE-EecCCCCc--eEEEEecCCEEEEEec----C-------CeEEEEEcCCCCeeEEEEc
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCR-TMDGHDVR--VGALAWNTYILSSGSR----C-------GNIVHHDVRSRDHKVALLQ 415 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~-~l~~h~~~--V~~l~~~~~~L~sgs~----d-------g~I~iwd~~~~~~~~~~~~ 415 (609)
++.|+ ..+.+||..+++-.. .+.....+ ...+..++.+++.|+. + ..+.+||..+.. -..+.
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W~~~~ 83 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE--WLGMP 83 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE--EEECC
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe--EEECC
Confidence 44455 579999998876432 22221122 2233347788888884 1 127788887653 12221
Q ss_pred cCCCCe--EEEEEccCCCEEEEEeCC--------CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEE
Q psy4876 416 NHTQEV--CGLKWSPDGRYLASGGND--------NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 416 ~h~~~V--~~l~~spdg~~lasgs~D--------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 485 (609)
.....- .+++.. ++.+++.|+.+ ..+.+||..+..- ..+..+........++.+ +..+++.|
T Consensus 84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~---~~~iyv~G 155 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW----GESDPLPYVVYGHTVLSH---MDLVYVIG 155 (315)
T ss_dssp CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEE----EECCCCSSCCBSCEEEEE---TTEEEEEC
T ss_pred CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcE----eECCCCCCcccceeEEEE---CCEEEEEe
Confidence 111110 112222 56677777742 4589999887521 111111111111122222 33577777
Q ss_pred eccC----CCeEEEEECCCCceeEEEcCC--C-CeEEEEEcCCCCeEEEEEecCCC----eEEEEECCCCceEEE--EeC
Q psy4876 486 GGTA----DRHIYFWNVSSGACLDSIDTK--S-QVCALLWNSDYKELVSAHGFAQN----QLIIWKYPSLVKVAE--LHG 552 (609)
Q Consensus 486 gGs~----Dg~I~iwd~~t~~~~~~~~~~--~-~v~sl~~s~~g~~l~~~sG~~dg----~I~Iwd~~~~~~~~~--l~~ 552 (609)
|... -..+.+||..+.+-...-... . ....+.+ ++ .|++..|..+. .+.+||..+.+-... +..
T Consensus 156 G~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 232 (315)
T 4asc_A 156 GKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQ 232 (315)
T ss_dssp CBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSS
T ss_pred CCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CC-EEEEEeccCCCCccceEEEEECCCCeEEECCCCCC
Confidence 5212 246899999876432211111 1 1122222 44 44444454332 588899876543221 111
Q ss_pred CCCCEEEEEEeCCCCEEEEEECCC--------------CEEEEEcCCC
Q psy4876 553 HSARVLNLAMSPDETTVLSAGADE--------------TLRLWKIFEK 586 (609)
Q Consensus 553 h~~~V~~l~~spdg~~L~s~s~Dg--------------~I~iWdl~~~ 586 (609)
.......+. -++++++.|+.++ .|.+||+.+.
T Consensus 233 ~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 233 ERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp CCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred cccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 111112222 2667777777642 3667787654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.36 Score=50.15 Aligned_cols=139 Identities=11% Similarity=0.110 Sum_probs=95.3
Q ss_pred CCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecC---CCCeEEEEEccCCCEEEEEeCC
Q psy4876 280 FNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEG---NENVCSVAWIQEGYMLGVGTSL 356 (609)
Q Consensus 280 ~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h---~~~V~~v~~spdg~~Lasgs~d 356 (609)
+.-+....++.||.-++.. +..-++..+++ -..|..+..+|+|++||..+.
T Consensus 32 ~t~i~~a~~n~iR~~~i~~-------------------------~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~- 85 (452)
T 3pbp_A 32 GTRIVFIQDNIIRWYNVLT-------------------------DSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND- 85 (452)
T ss_dssp TTEEEEEETTEEEEEETTT-------------------------CSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-
T ss_pred CCEEEEEECCEEEEEECCC-------------------------CCcceEEecCcccccCceeEEEECCCCCEEEEecC-
Confidence 3466677788999888875 22223333331 236788999999999998866
Q ss_pred CeEEEEeCCCCe------------eEEEecC------CCCceEEEEec-----CCEEEEEecCCeEEEEEcCCCC-eeEE
Q psy4876 357 GTVQLWDVSAKK------------KCRTMDG------HDVRVGALAWN-----TYILSSGSRCGNIVHHDVRSRD-HKVA 412 (609)
Q Consensus 357 g~I~iwd~~~~~------------~~~~l~~------h~~~V~~l~~~-----~~~L~sgs~dg~I~iwd~~~~~-~~~~ 412 (609)
..|.|-.+..+. ..+.+.- ...+|..+.|+ +..|++-..|+.|++||+.... .+.
T Consensus 86 ~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~- 164 (452)
T 3pbp_A 86 NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI- 164 (452)
T ss_dssp SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-
T ss_pred CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-
Confidence 579998886321 1223322 25779999995 5799999999999999998632 222
Q ss_pred EEc---------cCCCCeEEEEEccCCCEEEEEe--CCCcEEEE
Q psy4876 413 LLQ---------NHTQEVCGLKWSPDGRYLASGG--NDNLLNIW 445 (609)
Q Consensus 413 ~~~---------~h~~~V~~l~~spdg~~lasgs--~Dg~I~iw 445 (609)
.+. .....|.+++|..++-.|...+ .+|.|+-.
T Consensus 165 ~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 165 VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 332 1226789999999887676655 77888654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=1 Score=45.93 Aligned_cols=222 Identities=14% Similarity=0.110 Sum_probs=121.2
Q ss_pred EEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeee---c-CCCCeEEEEEccC
Q psy4876 272 LNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL---E-GNENVCSVAWIQE 346 (609)
Q Consensus 272 v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~-h~~~V~~v~~spd 346 (609)
-..|+|.|++ ++.+..++.|++++. . +. ..+..+ . .......|+|+|+
T Consensus 31 P~~ia~~pdG~l~V~e~~g~I~~~d~-~-------------------------G~-~~~~~~~v~~~g~~g~~gia~~pd 83 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVTERPGRLVLISP-S-------------------------GK-KLVASFDVANVGEAGLLGLALHPE 83 (354)
T ss_dssp EEEEEEEETTEEEEEETTTEEEEECS-S-------------------------CE-EEEEECCCCCSTTCSEEEEEECTT
T ss_pred CeEEEEcCCCeEEEEeCCCEEEEEeC-C-------------------------Cc-eEeeccceeecCCCceeeEEeCCC
Confidence 4568999987 666777899999973 3 32 223222 1 3456889999998
Q ss_pred ---CCEEEEEeC----C----CeEEEEeCCCC-------ee-EEEecC-CCCceEEEEe--cCCEEEEEec---------
Q psy4876 347 ---GYMLGVGTS----L----GTVQLWDVSAK-------KK-CRTMDG-HDVRVGALAW--NTYILSSGSR--------- 395 (609)
Q Consensus 347 ---g~~Lasgs~----d----g~I~iwd~~~~-------~~-~~~l~~-h~~~V~~l~~--~~~~L~sgs~--------- 395 (609)
+..|+++.. + ..|..|+.... +. +..+.. .......|.| ++.++++.+.
T Consensus 84 f~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d 163 (354)
T 3a9g_A 84 FPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQD 163 (354)
T ss_dssp TTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTC
T ss_pred CCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccC
Confidence 555555443 2 56777877643 11 111221 1112356777 5666665432
Q ss_pred ----CCeEEEEEcCCC--------CeeEEEEccCCCCeEEEEEcc-CCCEEEEEeCCC---cEEEEeCCCCCCC------
Q psy4876 396 ----CGNIVHHDVRSR--------DHKVALLQNHTQEVCGLKWSP-DGRYLASGGNDN---LLNIWSGVPGQHT------ 453 (609)
Q Consensus 396 ----dg~I~iwd~~~~--------~~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg---~I~iwd~~~~~~~------ 453 (609)
.|.|..++.+.. ...+ ...+|. ....++|+| +|.++++-...+ .|.+.. .+..-
T Consensus 164 ~~~~~G~I~ri~~dG~~p~~npf~~~~i-~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~ 239 (354)
T 3a9g_A 164 LSSLAGKILRVDEEGRPPADNPFPNSPI-WSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLAT 239 (354)
T ss_dssp TTCCSSEEEEECTTSCCCTTSSSTTCCE-EEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCC
T ss_pred CCCCCeEEEEEcCCCCCCCCCCCCCCcE-EEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCccc
Confidence 255666665432 1112 122343 356899999 676555533222 244332 22100
Q ss_pred ------CCccceEeecCCcccEEEEEEc-------CCCCcEEEEEeccCCCeEEEEECCCC-cee--EEEcC--CCCeEE
Q psy4876 454 ------FSTQPIHSLSRHQAAVKAIAWC-------PWSPNVLASGGGTADRHIYFWNVSSG-ACL--DSIDT--KSQVCA 515 (609)
Q Consensus 454 ------~~~~~~~~~~~h~~~V~~l~~s-------p~~~~llasggGs~Dg~I~iwd~~t~-~~~--~~~~~--~~~v~s 515 (609)
....++..+.........++|. .++ .++++. ...+.|...++... +.. ..+-. ...+..
T Consensus 240 g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~--~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~ 316 (354)
T 3a9g_A 240 GKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIAC--LRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRD 316 (354)
T ss_dssp SCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEE--TTTTEEEEEEECGGGCEEEEEEECTTTSCCEEE
T ss_pred CCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEE--cCCCEEEEEEECCCCcccceeeeccCCCCCeeE
Confidence 0012444442223456788884 334 565554 35788888888753 332 23322 357889
Q ss_pred EEEcCCCCeEEE
Q psy4876 516 LLWNSDYKELVS 527 (609)
Q Consensus 516 l~~s~~g~~l~~ 527 (609)
+++.|+|..+++
T Consensus 317 v~~~pDG~lyv~ 328 (354)
T 3a9g_A 317 VVIDDDGGILIS 328 (354)
T ss_dssp EEECTTSCEEEE
T ss_pred EEECCCCcEEEE
Confidence 999999865555
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.25 Score=49.30 Aligned_cols=215 Identities=12% Similarity=0.096 Sum_probs=102.6
Q ss_pred eEEEEeCCCCeeEE-EecCCC--CceEEEEecCCEEEEEec----CC-------eEEEEEcCCCCeeEEEEcc---CCCC
Q psy4876 358 TVQLWDVSAKKKCR-TMDGHD--VRVGALAWNTYILSSGSR----CG-------NIVHHDVRSRDHKVALLQN---HTQE 420 (609)
Q Consensus 358 ~I~iwd~~~~~~~~-~l~~h~--~~V~~l~~~~~~L~sgs~----dg-------~I~iwd~~~~~~~~~~~~~---h~~~ 420 (609)
.+.+||..+++-.. .+.... .....+..++.+++.|+. ++ .+.+||..+.. -..+.. ....
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~ 102 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE--WVGLPPLPSARCL 102 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE--EEECSCBSSCBCS
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc--EEECCCCCccccc
Confidence 48899998876433 222111 122223337788888873 12 16778887652 222211 1111
Q ss_pred eEEEEEccCCCEEEEEeCC-------CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC----
Q psy4876 421 VCGLKWSPDGRYLASGGND-------NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA---- 489 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~D-------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~---- 489 (609)
...+.+ ++.+++.|+.+ ..+.+||..+..- ..+..+........++.. +..+++.||...
T Consensus 103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~ 173 (318)
T 2woz_A 103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW----SEVKNLPIKVYGHNVISH---NGMIYCLGGKTDDKKC 173 (318)
T ss_dssp CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE----EEECCCSSCEESCEEEEE---TTEEEEECCEESSSCB
T ss_pred cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCE----eECCCCCCcccccEEEEE---CCEEEEEcCCCCCCCc
Confidence 122222 56777777754 3588899876521 111111111111112222 346777775211
Q ss_pred CCeEEEEECCCCceeEEEcCCC--CeEEEEEcCCCCeEEEEEecCC----CeEEEEECCCCceE--EEEeCCCCCEEEEE
Q psy4876 490 DRHIYFWNVSSGACLDSIDTKS--QVCALLWNSDYKELVSAHGFAQ----NQLIIWKYPSLVKV--AELHGHSARVLNLA 561 (609)
Q Consensus 490 Dg~I~iwd~~t~~~~~~~~~~~--~v~sl~~s~~g~~l~~~sG~~d----g~I~Iwd~~~~~~~--~~l~~h~~~V~~l~ 561 (609)
-..+.+||+.+.+-...-.... .-.+++.. ++ .|++..|..+ +.+.+||..+.+-. ..+.........+
T Consensus 174 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~- 250 (318)
T 2woz_A 174 TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KG-KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV- 250 (318)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-
T ss_pred cceEEEEcCCCCEEEECCCCCCCcccceEEEE-CC-EEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-
Confidence 2468999998765332211111 11122222 34 4444434332 35778898765422 2221111111222
Q ss_pred EeCCCCEEEEEECC--------------CCEEEEEcCCCc
Q psy4876 562 MSPDETTVLSAGAD--------------ETLRLWKIFEKV 587 (609)
Q Consensus 562 ~spdg~~L~s~s~D--------------g~I~iWdl~~~~ 587 (609)
.-++.+++.|+.+ ..|.+||+.+..
T Consensus 251 -~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 251 -SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp -EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred -EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 2366777777654 357778876643
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.21 E-value=2.3 Score=47.95 Aligned_cols=264 Identities=13% Similarity=0.099 Sum_probs=144.9
Q ss_pred eEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEE
Q psy4876 271 YLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYML 350 (609)
Q Consensus 271 ~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~L 350 (609)
.|.+|.-..++.|=++.+..+..||..+ ........ .....|.++.. .+| .|
T Consensus 64 ~i~~i~~d~~g~lWigT~~Gl~~yd~~~-------------------------~~f~~~~~-~~~~~i~~i~~-~~g-~l 115 (758)
T 3ott_A 64 RIYCGVIIDNTYLYMGTDNGILVYNYRA-------------------------DRYEQPET-DFPTDVRTMAL-QGD-TL 115 (758)
T ss_dssp CEEEEEEETTTEEEEEETTEEEEEETTT-------------------------TEECCCSC-CCCSCEEEEEE-ETT-EE
T ss_pred eEEEEEEcCCCcEEEEeCCCeEEEeCCC-------------------------CEEECccc-CCCceEEEEEe-cCC-cE
Confidence 4677776777744444456789999876 22221000 02235766654 344 56
Q ss_pred EEEeCCCeEEEEeCCCCeeEEEec----CCCCceEEEEec-CCEEEEEecCCeEEEEEcCCCCeeEEEEccC------CC
Q psy4876 351 GVGTSLGTVQLWDVSAKKKCRTMD----GHDVRVGALAWN-TYILSSGSRCGNIVHHDVRSRDHKVALLQNH------TQ 419 (609)
Q Consensus 351 asgs~dg~I~iwd~~~~~~~~~l~----~h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h------~~ 419 (609)
.+|+.+ -|..+|..+++...... .....|.++..+ ...|..|+.+ -|..++..+.. ...+... ..
T Consensus 116 Wigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 116 WLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGK--FEGIPLPVHSSQSNL 191 (758)
T ss_dssp EEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTE--EEEECCCCCTTCSSC
T ss_pred EEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCc--eEEecCCCccccccc
Confidence 667776 58889987655432211 123467887774 3445556654 47778876642 2222211 22
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS 499 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~ 499 (609)
.|.++....++..|-.|+. +-|..+|..++.. .....+ ....|.++....+|. +.+. + ++-|.++|..
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~----~~~~~l--~~~~i~~i~~d~~g~-lWig---T-~~Gl~~~~~~ 259 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI----KQTEAF--HNNSIKSLALDGNGD-LLAG---T-DNGLYVYHND 259 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE----EEEEEE--EEEEEEEEEECTTCC-EEEE---E-TTEEEEECCT
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE----EeccCC--CCCeEEEEEEcCCCC-EEEE---e-CCceeEEecC
Confidence 4888888877765555554 4588899776521 111112 234578888877764 4442 2 3458888887
Q ss_pred CCceeEEEc--------CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe-----CCCCCEEEEEEeCCC
Q psy4876 500 SGACLDSID--------TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH-----GHSARVLNLAMSPDE 566 (609)
Q Consensus 500 t~~~~~~~~--------~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~-----~h~~~V~~l~~spdg 566 (609)
++....... ....|.++....+|..-+. ...| +.++.....-...... .....|.++.-..+|
T Consensus 260 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiG---T~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g 335 (758)
T 3ott_A 260 TTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLG---TDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKG 335 (758)
T ss_dssp TSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEE---ESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTC
T ss_pred CCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEE---eCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCC
Confidence 665432211 1235888888887775553 2345 5554432211111110 123468888888777
Q ss_pred CEEEEEECCCCEEEEEcC
Q psy4876 567 TTVLSAGADETLRLWKIF 584 (609)
Q Consensus 567 ~~L~s~s~Dg~I~iWdl~ 584 (609)
.+.+ |+.+| +..++..
T Consensus 336 ~lWi-Gt~~G-l~~~~~~ 351 (758)
T 3ott_A 336 FYWF-GGANG-LIRFTDP 351 (758)
T ss_dssp CEEE-EETTE-EEEESCT
T ss_pred CEEE-eeCCc-ceeeccc
Confidence 7554 34554 5555443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.081 Score=55.02 Aligned_cols=108 Identities=11% Similarity=0.202 Sum_probs=80.0
Q ss_pred EEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC-----CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc--
Q psy4876 473 AWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK-----SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV-- 545 (609)
Q Consensus 473 ~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-----~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~-- 545 (609)
..+.+|..+++. .++.||.-++..+...+.+... ..+..+..+|+|.+|+.. .+..|.|..++.+.
T Consensus 27 ~~~~n~t~i~~a----~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~---g~~~V~Vv~LP~~~~~ 99 (452)
T 3pbp_A 27 FSSQNGTRIVFI----QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF---NDNEIFVMEVPWGYSN 99 (452)
T ss_dssp EEETTTTEEEEE----ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE---CSSEEEEEECCTTCSC
T ss_pred EEEcCCCEEEEE----ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe---cCCeEEEEEecCcccc
Confidence 345556566654 4799999998865556666543 268899999999999986 37899999988321
Q ss_pred ----------eEEEEeC------CCCCEEEEEEeCC---CCEEEEEECCCCEEEEEcCCCc
Q psy4876 546 ----------KVAELHG------HSARVLNLAMSPD---ETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 546 ----------~~~~l~~------h~~~V~~l~~spd---g~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
..+.+.- ...+|..+.|||- +..|++-..|+.||+||+....
T Consensus 100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~ 160 (452)
T 3pbp_A 100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQ 160 (452)
T ss_dssp CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTT
T ss_pred CcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCC
Confidence 1223321 2567999999994 5689999999999999999733
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.16 E-value=1.2 Score=44.28 Aligned_cols=214 Identities=7% Similarity=-0.058 Sum_probs=122.1
Q ss_pred EEEccCCCEEEEEeCC--------------CeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEe----cCCeEEEE
Q psy4876 341 VAWIQEGYMLGVGTSL--------------GTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGS----RCGNIVHH 402 (609)
Q Consensus 341 v~~spdg~~Lasgs~d--------------g~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs----~dg~I~iw 402 (609)
--++++|.+|+.+... ..|+..++..++...... .....++.++..|+-.. ....|..-
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~ 134 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---DPCIYASLIGNYIYYLHYDTQTATSLYRI 134 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---SCEEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---CCccEEEEeCCEEEEEeecCCCCceEEEE
Confidence 4557889888877543 467777877665333322 22335566777777665 33456666
Q ss_pred EcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcE
Q psy4876 403 DVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGN-DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 403 d~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 481 (609)
++... ....+..+.. ..|+++++.|+..+. ...|++.++..+ .....+. +... ..++|++..+
T Consensus 135 ~~dGs--~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~------~~~~l~~---~~~~-~~~~P~g~~i 198 (302)
T 3s25_A 135 RIDGE--EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQ------SEALFYD---CNCY-KPVVLDDTNV 198 (302)
T ss_dssp ETTSC--CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTT------EEEEEEC---SCEE-EEEEEETTEE
T ss_pred ECCCC--CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCC------CEEEEeC---CCcc-ceeeecCCEE
Confidence 66643 3344444432 456788888887665 578888888765 2222222 2222 3456888888
Q ss_pred EEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEE
Q psy4876 482 LASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLA 561 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~ 561 (609)
+.+..+ ....|..-++..+. ...+. ...+ ..|+|++..|+.+.....+.|..-++..........+ .+. .
T Consensus 199 y~t~~~-~~~~I~~~~ldG~~-~~~Lt-~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~---~~~--~ 268 (302)
T 3s25_A 199 YYMDVN-RDNAIVHVNINNPN-PVVLT-EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG---EFC--N 268 (302)
T ss_dssp EEEEGG-GTTEEEEECSSSCC-CEECS-CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES---CEE--E
T ss_pred EEEEcC-CCcEEEEEECCCCC-eEEEe-CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC---ccc--e
Confidence 777531 23567777776544 33332 2333 3488899999876433456788877765433333332 233 3
Q ss_pred EeCCCCEEEEEE-CCCCEEEEEc
Q psy4876 562 MSPDETTVLSAG-ADETLRLWKI 583 (609)
Q Consensus 562 ~spdg~~L~s~s-~Dg~I~iWdl 583 (609)
+++.+.+|+-.. ..+.|..-++
T Consensus 269 i~i~~d~Iy~td~~~~~i~~~~~ 291 (302)
T 3s25_A 269 INVTSQYVYFTDFVSNKEYCTST 291 (302)
T ss_dssp EEECSSEEEEEETTTCCEEEEES
T ss_pred EEEeCCEEEEEECCCCeEEEEEC
Confidence 455666776555 3345443343
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.12 Score=52.64 Aligned_cols=232 Identities=12% Similarity=0.026 Sum_probs=110.9
Q ss_pred CCCEEEEEeC-CCeEEEEeCCC-CeeEEEe---c-CCCCceEEEEecCCEEEEEec-C---------CeEEEEEcCCCCe
Q psy4876 346 EGYMLGVGTS-LGTVQLWDVSA-KKKCRTM---D-GHDVRVGALAWNTYILSSGSR-C---------GNIVHHDVRSRDH 409 (609)
Q Consensus 346 dg~~Lasgs~-dg~I~iwd~~~-~~~~~~l---~-~h~~~V~~l~~~~~~L~sgs~-d---------g~I~iwd~~~~~~ 409 (609)
++..++.|+. ...+.+||..+ ......+ . .......++..++.+++.|+. + ..+.+||+.+..
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~- 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS- 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTE-
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc-
Confidence 5666666654 34688999864 1222222 2 122233445557888888876 2 358889988753
Q ss_pred eEEEEcc---CCCCeEEEEEccCCCEEEEEeCC---------------------------------------CcEEEEeC
Q psy4876 410 KVALLQN---HTQEVCGLKWSPDGRYLASGGND---------------------------------------NLLNIWSG 447 (609)
Q Consensus 410 ~~~~~~~---h~~~V~~l~~spdg~~lasgs~D---------------------------------------g~I~iwd~ 447 (609)
-..+.. ....-.+++. .++++++.|+.+ ..+.+||.
T Consensus 98 -W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 98 -WVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp -EEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred -EEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 112211 1111112222 567788888764 57899998
Q ss_pred CCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEecc----CCCeEEEEEC--CCCceeE--EEcCCC-CeEEEEE
Q psy4876 448 VPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGT----ADRHIYFWNV--SSGACLD--SIDTKS-QVCALLW 518 (609)
Q Consensus 448 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs----~Dg~I~iwd~--~t~~~~~--~~~~~~-~v~sl~~ 518 (609)
.+..- ..+..+......-.+++.. +..+++.||.. ....+.+||+ .+.+-.. .+.... .....+.
T Consensus 176 ~~~~W----~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~ 249 (357)
T 2uvk_A 176 STQQW----SYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAG 249 (357)
T ss_dssp TTTEE----EEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEE
T ss_pred CCCcE----EECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEE
Confidence 87521 2222222111110122222 34677776521 1345777887 3332211 111111 1111122
Q ss_pred cCCCCeEEEEEecCC---------------------CeEEEEECCCC--ceEEEEeCCCCCEEEEEEeCCCCEEEEEECC
Q psy4876 519 NSDYKELVSAHGFAQ---------------------NQLIIWKYPSL--VKVAELHGHSARVLNLAMSPDETTVLSAGAD 575 (609)
Q Consensus 519 s~~g~~l~~~sG~~d---------------------g~I~Iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D 575 (609)
..+++ |++..|... ..+.+||..+. ..+..+...... +.+...++++++.||.+
T Consensus 250 ~~~~~-iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~ 326 (357)
T 2uvk_A 250 ISNDS-LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGET 326 (357)
T ss_dssp EETTE-EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEEC
T ss_pred EECCE-EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeC
Confidence 22344 444334211 25788988654 444444322222 22233478888888865
Q ss_pred C------CEEEEEcCCCccc
Q psy4876 576 E------TLRLWKIFEKVKS 589 (609)
Q Consensus 576 g------~I~iWdl~~~~~~ 589 (609)
+ .|.++++.+++..
T Consensus 327 ~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 327 AGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp GGGCEEEEEEEEEC-CCSCE
T ss_pred CCCCEeeeEEEEEEcCcEeE
Confidence 3 3445577665543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.48 Score=48.19 Aligned_cols=164 Identities=17% Similarity=0.136 Sum_probs=92.8
Q ss_pred EEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee----cCCcccEEEEEEcCC---CCcEEEEE
Q psy4876 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL----SRHQAAVKAIAWCPW---SPNVLASG 485 (609)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~----~~h~~~V~~l~~sp~---~~~llasg 485 (609)
.+...-.....|+|.|||.++++--..|.|++++...+.. ..+..+ .........|+++|+ +..++++-
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~----~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK----TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE----eeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence 3333445678999999999777665489999998665521 122222 234567899999995 34565542
Q ss_pred eccCCCeEEEEECCCCc----------ee-EEEcC--CCCeEEEEEcCCCCeEEEEEec------------CCCeEEEEE
Q psy4876 486 GGTADRHIYFWNVSSGA----------CL-DSIDT--KSQVCALLWNSDYKELVSAHGF------------AQNQLIIWK 540 (609)
Q Consensus 486 gGs~Dg~I~iwd~~t~~----------~~-~~~~~--~~~v~sl~~s~~g~~l~~~sG~------------~dg~I~Iwd 540 (609)
....+..|.-|.+..+. .+ ..+.. ......|.|.|+|.+.++. |. ..|.|.-++
T Consensus 102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~-Gd~~~~~~~qd~~~~~G~IlRi~ 180 (347)
T 3das_A 102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGT-GESGDTGLSQDRKSLGGKILRMT 180 (347)
T ss_dssp ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEEC-BCTTCGGGTTCTTCSTTCEEEEC
T ss_pred ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEE-CCCCCCccccCCCCCCCEEEEEe
Confidence 21245667777665421 11 12221 2245679999999755553 32 135555555
Q ss_pred CCCC---------ceEEEEeCCCCCEEEEEEeCCCCEEEEE-ECCCCEEEEEc
Q psy4876 541 YPSL---------VKVAELHGHSARVLNLAMSPDETTVLSA-GADETLRLWKI 583 (609)
Q Consensus 541 ~~~~---------~~~~~l~~h~~~V~~l~~spdg~~L~s~-s~Dg~I~iWdl 583 (609)
.... ..+.. .+|.. ...++|+|+|.+.++- +.|+.=.|-.+
T Consensus 181 ~dG~ip~~nPf~~~~i~a-~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i 231 (347)
T 3das_A 181 PDGEPAPGNPFPGSPVYS-YGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAI 231 (347)
T ss_dssp TTSSBCTTCSSTTCCEEE-BCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEE
T ss_pred CCCCccCCCCCCCCeEEe-eCCCC-cceEEECCCCCEEEEecCCCCCceeeEE
Confidence 4321 11211 35544 4689999988765543 33433333333
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.43 Score=48.69 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=81.3
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceE----eecCCcccEEEEEEcCC---CCcEEEEEecc-C-
Q psy4876 419 QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIH----SLSRHQAAVKAIAWCPW---SPNVLASGGGT-A- 489 (609)
Q Consensus 419 ~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~----~~~~h~~~V~~l~~sp~---~~~llasggGs-~- 489 (609)
.....|+|.|+|++|+++...|.|++++.... .. ..+. ...........|+|+|+ +..++++.... .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~-~~---~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~ 93 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKG-LS---APLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD 93 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTE-EC---CCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCc-ee---eEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence 35678999999983444566799999985422 10 1111 11223456789999996 55666654210 1
Q ss_pred ---CCeEEEEECCCC--c--eeEEE-c-------CCCCeEEEEEcCCCCeEEEEEecC------------CCeEEEEECC
Q psy4876 490 ---DRHIYFWNVSSG--A--CLDSI-D-------TKSQVCALLWNSDYKELVSAHGFA------------QNQLIIWKYP 542 (609)
Q Consensus 490 ---Dg~I~iwd~~t~--~--~~~~~-~-------~~~~v~sl~~s~~g~~l~~~sG~~------------dg~I~Iwd~~ 542 (609)
...|..|++..+ . ....+ . .......++|.|+|. |+++.|.. .+.|.-++..
T Consensus 94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d 172 (353)
T 2g8s_A 94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQ 172 (353)
T ss_dssp SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence 235777776533 1 11111 1 112346799999994 55544432 2467777754
Q ss_pred CC--------------ceEEEEeCCCCCEEEEEEeC-CCCEEEE
Q psy4876 543 SL--------------VKVAELHGHSARVLNLAMSP-DETTVLS 571 (609)
Q Consensus 543 ~~--------------~~~~~l~~h~~~V~~l~~sp-dg~~L~s 571 (609)
.. ..+.. .+|. ....++|+| +|.++++
T Consensus 173 G~~p~~npf~~~~~~~~~i~a-~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 173 GEIPDDNPFIKESGVRAEIWS-YGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp SCCCTTCTTTTSTTSCTTEEE-ECCS-EEEEEEEETTTTEEEEE
T ss_pred CCCCCCCCCcCCCCCCccEEE-EcCc-CccceEEECCCCCEEEE
Confidence 22 11111 2443 368899999 5654443
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.43 Score=53.54 Aligned_cols=195 Identities=15% Similarity=0.135 Sum_probs=103.7
Q ss_pred cCCCEEEEEeCC----CeEEEEeCCCCeeEEEe--------cCCCCceEEEEe--cCCEEEEEecCC------eEEEEEc
Q psy4876 345 QEGYMLGVGTSL----GTVQLWDVSAKKKCRTM--------DGHDVRVGALAW--NTYILSSGSRCG------NIVHHDV 404 (609)
Q Consensus 345 pdg~~Lasgs~d----g~I~iwd~~~~~~~~~l--------~~h~~~V~~l~~--~~~~L~sgs~dg------~I~iwd~ 404 (609)
-++..++.|+.+ ..+.+||..+++-...- .........+.+ ++.+++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777653 36889998876533322 112233455666 778888887543 4788888
Q ss_pred CCCCeeEEEEcc--CCCCeEEEEEccCCCEEEEEeCCC--cEEEEeCCCCCCCCCccceEe---ecCCcccEEEEEEcCC
Q psy4876 405 RSRDHKVALLQN--HTQEVCGLKWSPDGRYLASGGNDN--LLNIWSGVPGQHTFSTQPIHS---LSRHQAAVKAIAWCPW 477 (609)
Q Consensus 405 ~~~~~~~~~~~~--h~~~V~~l~~spdg~~lasgs~Dg--~I~iwd~~~~~~~~~~~~~~~---~~~h~~~V~~l~~sp~ 477 (609)
.+.. -..+.. ....-.+++...++.+++.|+.++ .+.+||..+..- ..+.. +........++.+...
T Consensus 476 ~t~~--W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W----~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 476 KTRE--WSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF----KDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TTTE--EEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEE----EECCCSSGGGGSCCBSCEEEEETT
T ss_pred CCCc--EEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCce----EEccCCCCCCCcccceeEEEEeCC
Confidence 8752 111111 111112233324788888888655 699999987521 11111 1111112233555554
Q ss_pred CCcEEEEEeccCC-----CeEEEEECCCCce-----eEEE-c--CCC-CeEEEEEcCCCCeEEEEEec-------CCCeE
Q psy4876 478 SPNVLASGGGTAD-----RHIYFWNVSSGAC-----LDSI-D--TKS-QVCALLWNSDYKELVSAHGF-------AQNQL 536 (609)
Q Consensus 478 ~~~llasggGs~D-----g~I~iwd~~t~~~-----~~~~-~--~~~-~v~sl~~s~~g~~l~~~sG~-------~dg~I 536 (609)
...+++.||...+ ..+.+||+.+..- -..+ . ... .-.+++...+++.++. .|. ..+.|
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~-GG~~~~~~~~~~~~v 628 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIV-GGTSPSGLFDRTNSI 628 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEE-CCBCSSCCCCTTTSE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEE-CCccCCCCCCCCCeE
Confidence 3568888763223 5689999987761 1122 1 111 1112222232444444 343 24569
Q ss_pred EEEECCCCce
Q psy4876 537 IIWKYPSLVK 546 (609)
Q Consensus 537 ~Iwd~~~~~~ 546 (609)
.+||..+.+-
T Consensus 629 ~~yd~~t~~W 638 (695)
T 2zwa_A 629 ISLDPLSETL 638 (695)
T ss_dssp EEEETTTTEE
T ss_pred EEEECCCCeE
Confidence 9999887653
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.19 E-value=1.2 Score=47.19 Aligned_cols=161 Identities=16% Similarity=0.195 Sum_probs=90.7
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC------CcccEEEEEEcCC---CCcEEEEEecc
Q psy4876 418 TQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR------HQAAVKAIAWCPW---SPNVLASGGGT 488 (609)
Q Consensus 418 ~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~------h~~~V~~l~~sp~---~~~llasggGs 488 (609)
-....+|+|.|+|+++++-...+.|++++...+.. ..+..+.. .......|+|+|+ +..|+++-...
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~----~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~ 101 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV----KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFK 101 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE----eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecc
Confidence 34677999999999777654445788888654421 22222221 3456789999996 55666654210
Q ss_pred -----C-----CCeEEEEECCCC--c-----ee-EEEcC--CCCeEEEEEcCCCCeEEEEEecC----------------
Q psy4876 489 -----A-----DRHIYFWNVSSG--A-----CL-DSIDT--KSQVCALLWNSDYKELVSAHGFA---------------- 532 (609)
Q Consensus 489 -----~-----Dg~I~iwd~~t~--~-----~~-~~~~~--~~~v~sl~~s~~g~~l~~~sG~~---------------- 532 (609)
. ...|.-|++..+ . .+ ..+.. ......|+|.++|.+.++. |..
T Consensus 102 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~-Gd~~~~~~~~~~~~~~~~~ 180 (454)
T 1cru_A 102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI-GDQGRNQLAYLFLPNQAQH 180 (454)
T ss_dssp CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE-CCTTTTSGGGTTSCCCTTC
T ss_pred ccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEE-CCCCCCCcccccccccccc
Confidence 0 235666665432 1 11 11221 2357899999999766554 421
Q ss_pred ---------------CCeEEEEECCCCc-----------eEEEE-eCCCCCEEEEEEeCCCCEEEEE-ECCCCEEEEEcC
Q psy4876 533 ---------------QNQLIIWKYPSLV-----------KVAEL-HGHSARVLNLAMSPDETTVLSA-GADETLRLWKIF 584 (609)
Q Consensus 533 ---------------dg~I~Iwd~~~~~-----------~~~~l-~~h~~~V~~l~~spdg~~L~s~-s~Dg~I~iWdl~ 584 (609)
.|.|.-++.. +. ....+ .+|. ....++|+|+|.+.++- +.|+.-.|..+.
T Consensus 181 ~p~~~~~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~R-Np~gla~dp~G~L~~~d~g~~~~dein~i~ 258 (454)
T 1cru_A 181 TPTQQELNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGHR-NPQGLAFTPNGKLLQSEQGPNSDDEINLIV 258 (454)
T ss_dssp CCCHHHHHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCCS-EEEEEEECTTSCEEEEEECSSSCEEEEECC
T ss_pred ccccccccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECCC-CcceEEECCCCCEEEEecCCCCCeEEEEec
Confidence 1445444433 22 11122 3453 46899999988755543 445444555444
Q ss_pred C
Q psy4876 585 E 585 (609)
Q Consensus 585 ~ 585 (609)
.
T Consensus 259 ~ 259 (454)
T 1cru_A 259 K 259 (454)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.64 Score=46.96 Aligned_cols=144 Identities=14% Similarity=0.098 Sum_probs=69.9
Q ss_pred CeEEEEeCCCCee--EEEecCC-CCceEEEEecCCEEEEEec------CCeEEEEEcCCCCeeEEEEccC---CCCeEEE
Q psy4876 357 GTVQLWDVSAKKK--CRTMDGH-DVRVGALAWNTYILSSGSR------CGNIVHHDVRSRDHKVALLQNH---TQEVCGL 424 (609)
Q Consensus 357 g~I~iwd~~~~~~--~~~l~~h-~~~V~~l~~~~~~L~sgs~------dg~I~iwd~~~~~~~~~~~~~h---~~~V~~l 424 (609)
..+.+||..+.+- +..+... ......+.+++.+++.|+. ...+.+||++.....-..+... .......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~ 247 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF 247 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCE
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccce
Confidence 4789999987643 3333321 1213444557777777764 3457778772221122222111 1111111
Q ss_pred EEccCCCEEEEEeCC----------------------CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEE
Q psy4876 425 KWSPDGRYLASGGND----------------------NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 425 ~~spdg~~lasgs~D----------------------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 482 (609)
+...++.+++.|+.+ ..+.+||+.+..- ..+..+........++.+ +..++
T Consensus 248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~---~~~i~ 320 (357)
T 2uvk_A 248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKW----DKSGELSQGRAYGVSLPW---NNSLL 320 (357)
T ss_dssp EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---C----EEEEECSSCCBSSEEEEE---TTEEE
T ss_pred EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCce----eeCCCCCCCcccceeEEe---CCEEE
Confidence 223356777777632 2578899886532 333333322222223333 34677
Q ss_pred EEEeccCC----CeEEEEECCCCceeEEE
Q psy4876 483 ASGGGTAD----RHIYFWNVSSGACLDSI 507 (609)
Q Consensus 483 asggGs~D----g~I~iwd~~t~~~~~~~ 507 (609)
+.||.+.+ ..|.++++++++.+...
T Consensus 321 v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 321 IIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred EEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 77763222 34666788877765443
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.10 E-value=4.3 Score=43.62 Aligned_cols=228 Identities=10% Similarity=0.043 Sum_probs=133.6
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEecCCC---------------------------CceEEEEe-----cCCEEEEEe-cC
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCRTMDGHD---------------------------VRVGALAW-----NTYILSSGS-RC 396 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~~l~~h~---------------------------~~V~~l~~-----~~~~L~sgs-~d 396 (609)
+.+|+..|.|+|+-+.+++.+..+.... ..-..+++ +|++|+.-. .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 5578888999999999998887764210 11123444 467777766 45
Q ss_pred CeEEEEEcCCCCeeEEEEccCCCCeEEEEEc--cCCCEEEEEeCC-------CcE---------EE---EeCCCCCCCCC
Q psy4876 397 GNIVHHDVRSRDHKVALLQNHTQEVCGLKWS--PDGRYLASGGND-------NLL---------NI---WSGVPGQHTFS 455 (609)
Q Consensus 397 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s--pdg~~lasgs~D-------g~I---------~i---wd~~~~~~~~~ 455 (609)
..|-..+++........-......+.++.|- |+-.|++.+++. |.. .+ .|..+.
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm----- 227 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETM----- 227 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTC-----
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCcc-----
Confidence 6788888887642222223456778888886 677888888752 221 00 111111
Q ss_pred ccceEeecCCcccEEEEEEcCCCCcEEEEEeccC------------CCe-------------------------EEEEEC
Q psy4876 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA------------DRH-------------------------IYFWNV 498 (609)
Q Consensus 456 ~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~------------Dg~-------------------------I~iwd~ 498 (609)
+...++.- .+....+...+++.+.+.++-.++ -.. +.+.|.
T Consensus 228 -~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~ 305 (638)
T 3sbq_A 228 -EMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDG 305 (638)
T ss_dssp -SEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred -EEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcc
Confidence 00111000 111223344566666666553111 112 334444
Q ss_pred CC----C-ceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-------------eEEEEeCCCCCEEEE
Q psy4876 499 SS----G-ACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV-------------KVAELHGHSARVLNL 560 (609)
Q Consensus 499 ~t----~-~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~-------------~~~~l~~h~~~V~~l 560 (609)
+. + ..+..+........+..+|||++++++ |--+.++.|+|+.... .+.+.. -.-..++.
T Consensus 306 ~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~-GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt 383 (638)
T 3sbq_A 306 RKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAA-GKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHT 383 (638)
T ss_dssp SCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEE-CTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEE
T ss_pred ccccccCCceEEEEeCCCCCcceeeCCCCCEEEEc-CCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEE
Confidence 33 1 122223333445678899999999987 6688999999986321 123333 23457899
Q ss_pred EEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 561 AMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 561 ~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
+|.++|....|.--|..|.-|++...
T Consensus 384 ~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 384 TFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred EECCCCceEeeeeecceEEEEeccHH
Confidence 99999965556668999999999653
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.6 Score=47.30 Aligned_cols=109 Identities=12% Similarity=0.021 Sum_probs=68.7
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCC-CCceEEEEe----cCCEEEEE--ecCCeEEEEEcCCCCeeEEEEcc----
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGH-DVRVGALAW----NTYILSSG--SRCGNIVHHDVRSRDHKVALLQN---- 416 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~----~~~~L~sg--s~dg~I~iwd~~~~~~~~~~~~~---- 416 (609)
..+++++.||.|.-+|..+|+.+-.+... ..++....- .+..++.+ +.||.|..++..++. ....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~-~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL-QKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE-EEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc-EEeeeccccce
Confidence 47888999999999999999998888754 122222211 12234444 589999999988763 2222221
Q ss_pred CCCCeEE---EEE-c----cCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec
Q psy4876 417 HTQEVCG---LKW-S----PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS 463 (609)
Q Consensus 417 h~~~V~~---l~~-s----pdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~ 463 (609)
...++.. ..+ . -.+..+++|+.+|.+...|+.+| +.+..+.
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG------~~~W~~~ 138 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG------EIISAFG 138 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTC------CEEEEES
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCC------cEEEEEe
Confidence 1122221 000 0 13557889999999999999999 5555554
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.54 E-value=1 Score=45.67 Aligned_cols=152 Identities=8% Similarity=-0.003 Sum_probs=79.4
Q ss_pred eCCCeEEEEeCCCCeeEEEecC----CCCceEE---EEe-------cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCC-
Q psy4876 354 TSLGTVQLWDVSAKKKCRTMDG----HDVRVGA---LAW-------NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHT- 418 (609)
Q Consensus 354 s~dg~I~iwd~~~~~~~~~l~~----h~~~V~~---l~~-------~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~- 418 (609)
+.||.|..++..+|.....+.. ...++.. ... .+..+++|+.+|.+...|..+++ .+..+....
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~-~~W~~~~~~~ 142 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE-IISAFGPGSK 142 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC-EEEEESTTCB
T ss_pred CCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc-EEEEEecCCC
Confidence 6899999999988755443321 1222221 001 46788899999999999999985 566554321
Q ss_pred -C-----CeEEEEEc-----cCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCccc--EE-EEEEcCCCCcEEEE
Q psy4876 419 -Q-----EVCGLKWS-----PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAA--VK-AIAWCPWSPNVLAS 484 (609)
Q Consensus 419 -~-----~V~~l~~s-----pdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~--V~-~l~~sp~~~~llas 484 (609)
. ...|.... -.+..++.|..+..|.+.+ +++. .+... .......... +. .-..+.++.. +++
T Consensus 143 ~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~-~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~ 218 (339)
T 2be1_A 143 NGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVT-YSTWQQNVLDVPLALQNTFSKDGMC-IAP 218 (339)
T ss_dssp CC--------------------CCEEEEEEEEEECEECC-TTSC-CCCCE-EEEEECCTTTHHHHTTCSSCSSSCC-EEE
T ss_pred cccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEe-cccccccccccccccccccccCCcE-EEE
Confidence 1 01111111 1235677777777777766 3442 11110 1111111000 00 0000123433 333
Q ss_pred EeccCCCeEEEEECCCCceeE-EEcCCCCe
Q psy4876 485 GGGTADRHIYFWNVSSGACLD-SIDTKSQV 513 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t~~~~~-~~~~~~~v 513 (609)
+.||.|.-+|..+|..+. .....+++
T Consensus 219 ---~~dg~v~A~d~~~G~~~W~~~~l~sPv 245 (339)
T 2be1_A 219 ---FRDKSLLASDLDFRIARWVSPTFPGII 245 (339)
T ss_dssp ---ETTTEEEEECSTTCCEEEECCCCSSCE
T ss_pred ---CCCCEEEEEECCCCcEEEEeecCCCCe
Confidence 379999999999998776 44444443
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=94.45 E-value=11 Score=44.78 Aligned_cols=223 Identities=15% Similarity=0.106 Sum_probs=121.5
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCC-CCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEc
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGH-DVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWS 427 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 427 (609)
.++=.+. ..|++.+......+..+... ...|...+.++..++.++ ++.|.++.+..+.-....-..-..+|.|+++.
T Consensus 485 ~ivQVt~-~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~ 562 (1158)
T 3ei3_A 485 QLIQITS-ASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDIT 562 (1158)
T ss_dssp EEEEEES-SCEEEEESSSCCEEEEECCTTCCCCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECC
T ss_pred eEEEEec-CEEEEEECCCCeEEEEEECCCCCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEee
Confidence 4443444 34778887665666666543 346888888777777775 67888888875421111112245689999998
Q ss_pred cC------CCEEEEEeC-CCcEEEEeCCCCCCCCCccceEeecC-CcccEEEEEEcCC-CCcEEEEEeccCCCeEEEEEC
Q psy4876 428 PD------GRYLASGGN-DNLLNIWSGVPGQHTFSTQPIHSLSR-HQAAVKAIAWCPW-SPNVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 428 pd------g~~lasgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~-~~~llasggGs~Dg~I~iwd~ 498 (609)
+. +.++|+|.. |++|+|+++... +.+....- ......++.+... +...|..| ..||.+..+.+
T Consensus 563 ~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l------~~~~~~~L~~~~~p~si~l~~~~~~~~L~ig--l~dG~l~~~~~ 634 (1158)
T 3ei3_A 563 PLGDSNGLSPLCAIGLWTDISARILKLPSF------ELLHKEMLGGEIIPRSILMTTFESSHYLLCA--LGDGALFYFGL 634 (1158)
T ss_dssp CCSSSTTCCSEEEEEETTTTEEEEEETTTC------CEEEEEECCSSCCEEEEEEEEETTEEEEEEE--ETTSEEEEEEE
T ss_pred cCCCCcccccEEEEEECCCCEEEEEECCCC------CeEEEEECCCCCCCcEEEEEEeCCCcEEEEE--eCCCeEEEEEE
Confidence 63 468999996 999999999865 33322211 1123444444322 22334444 47898765554
Q ss_pred --CCCceeEE--Ec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEE-EEEEeCC--CCEEE
Q psy4876 499 --SSGACLDS--ID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVL-NLAMSPD--ETTVL 570 (609)
Q Consensus 499 --~t~~~~~~--~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~-~l~~spd--g~~L~ 570 (609)
.+|..... .. +..++.-..+...+..-+.++| +.-..+|.....-....+ ....+. ...|+.. ..-++
T Consensus 635 d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s--~rp~liy~~~~~l~~s~l--~~~~v~~~~~F~se~~~~g~v 710 (1158)
T 3ei3_A 635 NIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS--DRPTVIYSSNHKLVFSNV--NLKEVNYMCPLNSDGYPDSLA 710 (1158)
T ss_dssp CTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEES--SSCEEEEESSSSEEEEEB--SSSCCCEEEEECCSSSTTEEE
T ss_pred cCCCCccccceeEEcCCCceEEEEEeeCCceeEEEEC--CCCEEEEEcCCceEEecc--ChHHhceEeccCcccCCCcEE
Confidence 45655432 22 2234544445555555444443 444445544322111111 112332 3335432 12344
Q ss_pred EEECCCCEEEEEcCCC
Q psy4876 571 SAGADETLRLWKIFEK 586 (609)
Q Consensus 571 s~s~Dg~I~iWdl~~~ 586 (609)
.+ .++.++|..+..-
T Consensus 711 ~~-~~~~LrI~~i~~~ 725 (1158)
T 3ei3_A 711 LA-NNSTLTIGTIDEI 725 (1158)
T ss_dssp EE-CSSCEEEEEECCS
T ss_pred EE-cCCceEEEEeccc
Confidence 33 3566998887544
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=3.4 Score=38.98 Aligned_cols=154 Identities=10% Similarity=0.020 Sum_probs=89.9
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEE
Q psy4876 419 QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWN 497 (609)
Q Consensus 419 ~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd 497 (609)
..+..++|+|+|.+.++ .+|.++-.+..+.....-...-..+ ...-....++.|.|+| .|.++ .||.|+-++
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G-~LYav----~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNG-YLYAV----SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTS-CEEEE----ETTEEEEES
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCC-CEEEe----CCCEEEEeC
Confidence 46779999999987777 5677777776543110000001111 0011124789999988 45555 269998888
Q ss_pred CCCCcee------EEEcC-C-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc------eEEEE-eCCCCCEEEEEE
Q psy4876 498 VSSGACL------DSIDT-K-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV------KVAEL-HGHSARVLNLAM 562 (609)
Q Consensus 498 ~~t~~~~------~~~~~-~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~------~~~~l-~~h~~~V~~l~~ 562 (609)
-.+...- ..+-. . ..+..|.+.|+|.+.++ . ++.++-...++.. ....+ ...-.....+.|
T Consensus 114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav--~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f 189 (236)
T 1tl2_A 114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAV--H--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF 189 (236)
T ss_dssp CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEE--E--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEE--e--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEE
Confidence 6432211 11111 1 36799999999998877 2 6666555444322 11122 133345566789
Q ss_pred eCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 563 SPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 563 spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
.++|.+.+.. ++ +||......
T Consensus 190 ~~~G~l~~v~--~g--~~Y~~~~p~ 210 (236)
T 1tl2_A 190 SSVGTLFGVQ--GG--KFYEDYPPS 210 (236)
T ss_dssp CTTSCEEEEE--TT--EEEEESCCC
T ss_pred CCCCcEEEEe--CC--eEEecCCcc
Confidence 9999877666 66 666665543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.3 Score=54.83 Aligned_cols=155 Identities=13% Similarity=0.119 Sum_probs=84.7
Q ss_pred CCCEEEEEeCC------CeEEEEeCCCCeeEE--EecCCCCceEEEEe-cCCEEEEEecCC--eEEEEEcCCCCeeEEEE
Q psy4876 346 EGYMLGVGTSL------GTVQLWDVSAKKKCR--TMDGHDVRVGALAW-NTYILSSGSRCG--NIVHHDVRSRDHKVALL 414 (609)
Q Consensus 346 dg~~Lasgs~d------g~I~iwd~~~~~~~~--~l~~h~~~V~~l~~-~~~~L~sgs~dg--~I~iwd~~~~~~~~~~~ 414 (609)
++..++.|+.+ ..+.+||..+.+-.. .+......-.++.+ ++.+++.|+.++ .+.+||..+.. -..+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~ 528 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKDV 528 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEEC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEEc
Confidence 67777777654 358899988754322 22222233345554 788888888765 68999998753 2222
Q ss_pred cc------CCCCeEEEEEccC-CCEEEEEeC--C-----CcEEEEeCCCCCC--CCCccceEeec-CCcccEEEEEEcCC
Q psy4876 415 QN------HTQEVCGLKWSPD-GRYLASGGN--D-----NLLNIWSGVPGQH--TFSTQPIHSLS-RHQAAVKAIAWCPW 477 (609)
Q Consensus 415 ~~------h~~~V~~l~~spd-g~~lasgs~--D-----g~I~iwd~~~~~~--~~~~~~~~~~~-~h~~~V~~l~~sp~ 477 (609)
.. ......++.+..+ +.+++.|+. + +.+.+||+.+... ......+.... .......++.+ .+
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~ 607 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-TP 607 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-ET
T ss_pred cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe-CC
Confidence 11 1122233555554 667777775 2 4589999987631 00011111110 11111223333 22
Q ss_pred CCcEEEEEecc------CCCeEEEEECCCCcee
Q psy4876 478 SPNVLASGGGT------ADRHIYFWNVSSGACL 504 (609)
Q Consensus 478 ~~~llasggGs------~Dg~I~iwd~~t~~~~ 504 (609)
..+++.||.+ ....|.+||+.+.+-.
T Consensus 608 -~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 608 -RKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp -TEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred -CEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 3677777522 2356999999877543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=94.17 E-value=1.2 Score=53.14 Aligned_cols=195 Identities=12% Similarity=0.171 Sum_probs=113.7
Q ss_pred EEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec---CCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE---GNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---h~~~V~~v~~spdg~ 348 (609)
|.--.|-.+..|+.-.+..|+-|++... .....+++.. ....|..-..+++.+
T Consensus 108 VvfWkWis~~~l~lVT~~aVyHW~~~~~------------------------s~P~k~fdR~~~L~~~QIinY~~d~~~k 163 (1630)
T 1xi4_A 108 VTFWKWISLNTVALVTDNAVYHWSMEGE------------------------SQPVKMFDRHSSLAGCQIINYRTDAKQK 163 (1630)
T ss_pred ceEEEecCCCeeEEEcCCeEEEeccCCC------------------------CccHHHHhcchhcccCeeEEeeeCCCCC
Confidence 3346787888888888999999999651 1111122111 245677777778887
Q ss_pred EEEEEe-------CCCeEEEEeCCCCeeEEEecCCCCceEEEEecC-----CEEEEEec---CCeEEEEEcCCC--C-ee
Q psy4876 349 MLGVGT-------SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT-----YILSSGSR---CGNIVHHDVRSR--D-HK 410 (609)
Q Consensus 349 ~Lasgs-------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~-----~~L~sgs~---dg~I~iwd~~~~--~-~~ 410 (609)
+++..+ -.|.+.+|.++. +.-+.+.||.+....+..+| .+++.+.. .+.++|-++... + ..
T Consensus 164 W~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~ 242 (1630)
T 1xi4_A 164 WLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP 242 (1630)
T ss_pred eEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCC
Confidence 776533 348899999875 44566777776666555532 23333332 268888888543 1 00
Q ss_pred -----EEEEc---cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEE
Q psy4876 411 -----VALLQ---NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 411 -----~~~~~---~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 482 (609)
+..+. .-.+-..++..++.-..+...+.-|.|++||+.++ .++..-.-....|...+-+.....++
T Consensus 243 f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~------~~i~~~ris~~~iF~~~~~~~~~g~~ 316 (1630)
T 1xi4_A 243 FPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG------TCIYMNRISGETIFVTAPHEATAGII 316 (1630)
T ss_pred CccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc------hhhhhccccCCceEEeccCCCCCceE
Confidence 11111 11233456777887778888888999999999999 44444333344444433333333344
Q ss_pred EEEeccCCCeEEEEECCC
Q psy4876 483 ASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t 500 (609)
++. ..|.|.--.+..
T Consensus 317 ~vn---r~G~vl~v~v~~ 331 (1630)
T 1xi4_A 317 GVN---RKGQVLSVCVEE 331 (1630)
T ss_pred EEc---CCceEEEEEEcc
Confidence 432 345444444433
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.23 Score=46.94 Aligned_cols=142 Identities=9% Similarity=0.031 Sum_probs=75.7
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCee------EEEec-CCCCceEEEEec--CCEEEEEecCCeEEEEEcCC
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKK------CRTMD-GHDVRVGALAWN--TYILSSGSRCGNIVHHDVRS 406 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~------~~~l~-~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~ 406 (609)
..+.+++|+|+|.+.++ .+|.+.-.+..+... -..+- ..-....++.|+ +.+.++ .||.|+-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 36779999999987776 668776666544211 11111 011114677775 444444 679998887643
Q ss_pred CCee------EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec-CCcccEEEEEEcCCCC
Q psy4876 407 RDHK------VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS-RHQAAVKAIAWCPWSP 479 (609)
Q Consensus 407 ~~~~------~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~ 479 (609)
.... ...-..--..+..|.+.|+|.+.++. |+.++-+..-......-......+. ..-...+-+.|++++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G- 193 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG- 193 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS-
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC-
Confidence 2211 11112222578999999999887776 7775443322211000000111111 233344557788877
Q ss_pred cEEEE
Q psy4876 480 NVLAS 484 (609)
Q Consensus 480 ~llas 484 (609)
.|+++
T Consensus 194 ~l~~v 198 (236)
T 1tl2_A 194 TLFGV 198 (236)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 45444
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=92.88 E-value=5.8 Score=38.74 Aligned_cols=224 Identities=12% Similarity=0.033 Sum_probs=114.2
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEc
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQ 415 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~ 415 (609)
..|..|+.... +.+.-. ||.|..|-......+..-......|..++......+.-. ||.|+.|-.....+.- .-.
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg-~P~ 98 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTT-VPA 98 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTC-CCG
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCC-CCc
Confidence 35666665432 333335 899999976543222211112346777777544333335 9999999765432211 111
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEE
Q psy4876 416 NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYF 495 (609)
Q Consensus 416 ~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~i 495 (609)
.-...|..|+...+ +.+.-. ||.|+.|-..... +. .........|..++.... +.++. + |+.|+.
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~g-----ql-g~~~~~~~~i~~i~~G~~--~~~~l---~-~G~v~~ 163 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDG-----QT-TVPAEAQSGVTALDGGVY--TALAV---K-NGGVIA 163 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTS-----TT-SCCGGGGSSEEEEEECSS--EEEEE---E-TTEEEE
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCC-----cC-CCCccCCCCeEEEEcccC--EEEEE---E-CCEEEE
Confidence 11346777776543 333445 8999999765431 11 001112345666665432 23333 2 788888
Q ss_pred EECCCCceeE-EEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEEC
Q psy4876 496 WNVSSGACLD-SIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGA 574 (609)
Q Consensus 496 wd~~t~~~~~-~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~ 574 (609)
|-......+. .......|..++.......++ .+|.|+.|-......+..-......|..|+-..+.. ++..
T Consensus 164 wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al-----~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~-~al~-- 235 (282)
T 3qhy_B 164 WGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL-----KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYS-LALK-- 235 (282)
T ss_dssp EECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-----ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCE-EEEE--
T ss_pred ecCCCCCCCCCceecCCCeEEEEecCCEEEEE-----ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEE-EEEE--
Confidence 8765322111 111223566665433322221 388899997644322211011123567776554433 3333
Q ss_pred CCCEEEEEcCCCc
Q psy4876 575 DETLRLWKIFEKV 587 (609)
Q Consensus 575 Dg~I~iWdl~~~~ 587 (609)
||.|..|-.....
T Consensus 236 ~g~v~~wG~n~~g 248 (282)
T 3qhy_B 236 NGKVIAWGSSRTA 248 (282)
T ss_dssp TTEEEEESTTCCC
T ss_pred CCEEEEecCCCCc
Confidence 8999999766543
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=91.06 E-value=12 Score=36.42 Aligned_cols=221 Identities=17% Similarity=0.157 Sum_probs=115.6
Q ss_pred EEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEE
Q psy4876 272 LNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLG 351 (609)
Q Consensus 272 v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~La 351 (609)
|..|+......++.. ||.|+.|-.....+. +. .......|..|+.... ..++
T Consensus 26 i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gql---------------------g~-----p~~~~~~i~~ia~G~~-hs~~ 77 (282)
T 3qhy_B 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQL---------------------TM-----PAATQSGVDAIAAGNY-HSLA 77 (282)
T ss_dssp CCEEEECSSEEEEEE-TTEEEEEECCSSSTT---------------------SC-----CGGGGSCCCEEEECSS-EEEE
T ss_pred CcEEEeCCCeEEEEE-CCEEEEEeCCCCCCC---------------------CC-----CccCCCCEEEEEeCCC-EEEE
Confidence 445666666667776 999999987652111 10 0011234666665433 2333
Q ss_pred EEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCC
Q psy4876 352 VGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR 431 (609)
Q Consensus 352 sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 431 (609)
. . ||.|..|-......+..-..-...|..++......+.-. ||.|+.|-.....+.- ........|..++...+
T Consensus 78 l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~-- 151 (282)
T 3qhy_B 78 L-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVY-- 151 (282)
T ss_dssp E-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSS--
T ss_pred E-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccC--
Confidence 3 4 899999976543222111112346888888665555566 9999999765433211 11112345766665433
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee-EEEcCC
Q psy4876 432 YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL-DSIDTK 510 (609)
Q Consensus 432 ~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~-~~~~~~ 510 (609)
+.+.-. ||.|+.|-........ .+. .-...|..++-..+ +.++. .|+.|+.|=......+ ......
T Consensus 152 ~~~~l~-~G~v~~wG~n~~gqlg--~p~----~~~~~v~~i~~G~~--hs~al----~~G~v~~wG~n~~gqlg~p~~~~ 218 (282)
T 3qhy_B 152 TALAVK-NGGVIAWGDNYFGQTT--VPA----EAQSGVDDVAGGIF--HSLAL----KDGKVIAWGDNRYKQTTVPTEAL 218 (282)
T ss_dssp EEEEEE-TTEEEEEECCTTSTTS--CCG----GGGSSEEEEEECSS--EEEEE----ETTEEEEEECCTTSTTCCCGGGG
T ss_pred EEEEEE-CCEEEEecCCCCCCCC--Cce----ecCCCeEEEEecCC--EEEEE----ECCeEEEEECCCCCCCCCCcccC
Confidence 223334 7999999765431110 111 11245677765443 23333 2888999876532211 111122
Q ss_pred CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q psy4876 511 SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL 544 (609)
Q Consensus 511 ~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~ 544 (609)
..|..++-.... .++. . +|.|+.|-....
T Consensus 219 ~~v~~i~~G~~h-~~al--~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 219 SGVSAIASGEWY-SLAL--K--NGKVIAWGSSRT 247 (282)
T ss_dssp SSCCEEEECSSC-EEEE--E--TTEEEEESTTCC
T ss_pred CCceEEEcCCCE-EEEE--E--CCEEEEecCCCC
Confidence 345555543332 2222 2 788888876543
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=83.51 E-value=60 Score=36.06 Aligned_cols=236 Identities=9% Similarity=0.040 Sum_probs=121.3
Q ss_pred eEEEE-EccCCCEEEEEeCC-----CeEEEEeCCCCeeEEE-ec-CCCC------ceEEEEe-cCCEEEEEec-------
Q psy4876 338 VCSVA-WIQEGYMLGVGTSL-----GTVQLWDVSAKKKCRT-MD-GHDV------RVGALAW-NTYILSSGSR------- 395 (609)
Q Consensus 338 V~~v~-~spdg~~Lasgs~d-----g~I~iwd~~~~~~~~~-l~-~h~~------~V~~l~~-~~~~L~sgs~------- 395 (609)
...+. ++|++++++.+-+. ..|+++|+.+++.+.. +. .-.. ....++| +.+.++.+..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence 34455 78999887775332 3799999999886631 11 0000 1134577 4454444321
Q ss_pred ----CCeEEEEEcCCCCe-eEEEEccCCCC-eEEEEEccCCCE-----EEEEeCC---CcEEEEeCCCCCCCCCccceEe
Q psy4876 396 ----CGNIVHHDVRSRDH-KVALLQNHTQE-VCGLKWSPDGRY-----LASGGND---NLLNIWSGVPGQHTFSTQPIHS 461 (609)
Q Consensus 396 ----dg~I~iwd~~~~~~-~~~~~~~h~~~-V~~l~~spdg~~-----lasgs~D---g~I~iwd~~~~~~~~~~~~~~~ 461 (609)
...|+.|.+-+... -...+.+.... -.+...++++++ +++.+.+ ..+++.|..... ..+..
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~ 285 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKN-----LKLQK 285 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSS-----CEEEE
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCC-----CcceE
Confidence 24588888776531 23334333333 334556677662 4444422 456777765421 11222
Q ss_pred ecCCcccEEEEEEcCCCCcEEEEEe--------ccCCCeEEEEECCCCc-------eeEE-EcCC--CCeEEEEEcCCCC
Q psy4876 462 LSRHQAAVKAIAWCPWSPNVLASGG--------GTADRHIYFWNVSSGA-------CLDS-IDTK--SQVCALLWNSDYK 523 (609)
Q Consensus 462 ~~~h~~~V~~l~~sp~~~~llasgg--------Gs~Dg~I~iwd~~t~~-------~~~~-~~~~--~~v~sl~~s~~g~ 523 (609)
+...... .+..+..+ .+++... +...+.|...|+.++. .... +... ..+..+.|..+ .
T Consensus 286 l~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 361 (711)
T 4hvt_A 286 INMPSDA--TLQGSFKE-YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-R 361 (711)
T ss_dssp CCSCTTC--EEEEEETT-EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-C
T ss_pred eecCCcc--eEeeeECC-EEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-E
Confidence 3222221 12334444 4444221 0136778999987642 2222 3332 36778888876 3
Q ss_pred eEEEEEecCCC--eEEEEECCCCc-eEEE-EeCC-CCCEEEEEEeCCCC-EEEEEEC---CCCEEEEEcC
Q psy4876 524 ELVSAHGFAQN--QLIIWKYPSLV-KVAE-LHGH-SARVLNLAMSPDET-TVLSAGA---DETLRLWKIF 584 (609)
Q Consensus 524 ~l~~~sG~~dg--~I~Iwd~~~~~-~~~~-l~~h-~~~V~~l~~spdg~-~L~s~s~---Dg~I~iWdl~ 584 (609)
.+++.. .++ .|.+++..++. .+.. +... .+.|..+.+++++. ++++.+. -+.+..+|+.
T Consensus 362 l~~~~~--~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 362 VFLATY--DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEE--ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEE--ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 444433 344 57777766664 2223 2211 24566666777765 4444443 2567777765
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.08 E-value=50 Score=33.44 Aligned_cols=249 Identities=13% Similarity=0.084 Sum_probs=129.2
Q ss_pred EEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEE
Q psy4876 272 LNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLG 351 (609)
Q Consensus 272 v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~La 351 (609)
+..|+......++...||.|+.|-.....+... +. .........+..+ ....+..++.+....+.+
T Consensus 55 i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~-------g~------~~~~~~p~~v~~~-~~~~~~~v~i~~G~~h~~ 120 (389)
T 3kci_A 55 PVQLIGGEQTLFAVTADGKLYATGYGAGGRLGI-------GG------TESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 120 (389)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEECCGGGTTSS-------SS------SCCEEEEEECGGG-TTSCEEEEEECTTCSEEE
T ss_pred eEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCC-------CC------cCCccCCEEcccc-cCCceeEEEECcCCCeEE
Confidence 444666666688899999999997654211000 00 0000011111111 334566677777677777
Q ss_pred EEeCCCeEEEEeCCCC-----------eeEEEecC-CCCceEEEEecCCEEEEEecCCeEEEEEcCCCC---------e-
Q psy4876 352 VGTSLGTVQLWDVSAK-----------KKCRTMDG-HDVRVGALAWNTYILSSGSRCGNIVHHDVRSRD---------H- 409 (609)
Q Consensus 352 sgs~dg~I~iwd~~~~-----------~~~~~l~~-h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~---------~- 409 (609)
+-+.||.|..|-.... .....+.. ....|..++......++...+|.|+.|-..... .
T Consensus 121 al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~ 200 (389)
T 3kci_A 121 ALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQL 200 (389)
T ss_dssp EEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEE
T ss_pred EEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccc
Confidence 7888999999965321 11122222 223677888877777778889999999653211 0
Q ss_pred eEEEEc-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC------CCCccceEeecCCcccEEEEEEcCCCCcEE
Q psy4876 410 KVALLQ-NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQH------TFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 410 ~~~~~~-~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~------~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 482 (609)
....+. .....|..++......+.+.-..||.|+.|-...... .....+...-......|..|+.... +.+
T Consensus 201 ~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~--hs~ 278 (389)
T 3kci_A 201 KPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ--FSV 278 (389)
T ss_dssp EEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT--EEE
T ss_pred cceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC--EEE
Confidence 111111 1234566666654335666677899999996542100 0000111111111224666665432 333
Q ss_pred EEEeccCCCeEEEEECCCCc-----------eeEEEcC--CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q psy4876 483 ASGGGTADRHIYFWNVSSGA-----------CLDSIDT--KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS 543 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~-----------~~~~~~~--~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~ 543 (609)
+. +.||.|+.|=..... ....+.. ...|..++..... .++.. .+|.|+.|-...
T Consensus 279 al---t~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h--~~al~--~~G~v~~wG~n~ 345 (389)
T 3kci_A 279 AL---TKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLH--CVCCT--EDGEVYTWGDND 345 (389)
T ss_dssp EE---ETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSE--EEEEE--TTCCEEEEECCT
T ss_pred EE---eCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCe--EEEEC--CCCCEEEeeCCC
Confidence 33 268999999754211 0111111 1245555543332 22222 788999997643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 609 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-26 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-21 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-19 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-13 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-10 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-19 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-14 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-13 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-13 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-11 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-13 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 9e-11 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 9e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-12 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-11 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-09 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.002 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.002 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.004 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-10 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.001 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-10 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-10 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.003 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-08 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.002 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 9e-08 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-07 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 7e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.003 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 5e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 4e-05 | |
| d1k32a2 | 281 | b.68.7.1 (A:39-319) Tricorn protease N-terminal do | 0.004 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 108 bits (270), Expect = 1e-26
Identities = 61/314 (19%), Positives = 114/314 (36%), Gaps = 72/314 (22%)
Query: 332 LEGNEN-VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW----- 385
L G+ + V V + ++ + T+++WD RT+ GH V +++
Sbjct: 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72
Query: 386 ---------------------------------------NTYILSSGSRCGNIVHHDVRS 406
N + S SR I +V++
Sbjct: 73 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 132
Query: 407 RDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQ 466
V H + V ++ + DG +AS ND + +W + + L H+
Sbjct: 133 GYC-VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW------VVATKECKAELREHR 185
Query: 467 AAVKAIAWCPWSPNVLASGG-----------------GTADRHIYFWNVSSGACLDSIDT 509
V+ I+W P S S G+ D+ I W+VS+G CL ++
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245
Query: 510 -KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETT 568
+ V +L++S K ++S L +W Y + + L+ H V +L
Sbjct: 246 HDNWVRGVLFHSGGKFILS--CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 303
Query: 569 VLSAGADETLRLWK 582
V++ D+T+++W+
Sbjct: 304 VVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.2 bits (170), Expect = 9e-14
Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 10/170 (5%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L H V + + P + S D + +W G +L H +V+ I+
Sbjct: 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG------DFERTLKGHTDSVQDIS 66
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQ 533
+ + + + F + D +++ N D+ S
Sbjct: 67 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK--- 123
Query: 534 NQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKI 583
+ +W+ + V GH V + + D T + S D+T+R+W +
Sbjct: 124 -TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.0 bits (115), Expect = 9e-07
Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 42/128 (32%)
Query: 319 CIQDNRAIDHLMDLEGNEN-VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHD 377
+ D LM L G++N V V + G + T+++WD K+ +T++
Sbjct: 230 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-- 287
Query: 378 VRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGG 437
H V L + Y+ +G
Sbjct: 288 ---------------------------------------HEHFVTSLDFHKTAPYVVTGS 308
Query: 438 NDNLLNIW 445
D + +W
Sbjct: 309 VDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.2 bits (113), Expect = 1e-06
Identities = 24/128 (18%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCA 515
++LS H++ V + + P +V+ S D I W+ +G ++ +
Sbjct: 7 PPEKYALSGHRSPVTRVIFHP-VFSVMVSAS--EDATIKVWDYETGDFERTLKGHTDSVQ 63
Query: 516 LLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGAD 575
+ + + A A + +W + + +HGH V ++++ P+ ++SA D
Sbjct: 64 DISFDHSGK-LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 122
Query: 576 ETLRLWKI 583
+T+++W++
Sbjct: 123 KTIKMWEV 130
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 542 PSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKI 583
P + L GH + V + P + ++SA D T+++W
Sbjct: 5 PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY 46
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 92.5 bits (228), Expect = 5e-21
Identities = 38/248 (15%), Positives = 77/248 (31%), Gaps = 12/248 (4%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKC----RTMDGHDVRVGALAWNTYILSSG 393
V + A+ G + G ++++ ++ R + GH + +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 394 SRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHT 453
S + HT +V L +PD R SG D +W
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD------V 213
Query: 454 FSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQV 513
+ + H++ + AI + P R + +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 514 CALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAG 573
++ ++ + L++ G+ +W + L GH RV L ++ D V +
Sbjct: 274 TSVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331
Query: 574 ADETLRLW 581
D L++W
Sbjct: 332 WDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 86.7 bits (213), Expect = 5e-19
Identities = 29/185 (15%), Positives = 56/185 (30%), Gaps = 12/185 (6%)
Query: 316 TSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDG 375
T +V S++ + + G + +LWDV +T G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 376 HDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRY 432
H+ + A+ + + + ++ N + + +S GR
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 433 LASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH 492
L +G +D N+W L+ H V + +A+G D
Sbjct: 285 LLAGYDDFNCNVW------DALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGS--WDSF 335
Query: 493 IYFWN 497
+ WN
Sbjct: 336 LKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.2 bits (165), Expect = 5e-13
Identities = 30/254 (11%), Positives = 77/254 (30%), Gaps = 7/254 (2%)
Query: 332 LEGNEN-VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYIL 390
L G+ + ++ W + +L + G + +WD K + V A+
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 391 SSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPG 450
+ + + + ++E+ G + +
Sbjct: 111 YVACGGLDNICSIYNLKTREG--NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 451 QHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT- 509
+ Q + + H V +++ P + ++ G D W+V G C +
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS---GACDASAKLWDVREGMCRQTFTGH 225
Query: 510 KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTV 569
+S + A+ + + + A +L + + + +++ S +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 570 LSAGADETLRLWKI 583
L+ D +W
Sbjct: 286 LAGYDDFNCNVWDA 299
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.0 bits (141), Expect = 5e-10
Identities = 31/235 (13%), Positives = 58/235 (24%), Gaps = 47/235 (20%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L+ H ++ + W D R L S D L IW +++T +H++ + V A
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW------DSYTTNKVHAIPLRSSWVMTCA 104
Query: 474 WCPWSPNVLASGGGTADRHIYF-------------------------------------- 495
+ P V G
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164
Query: 496 ---WNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552
+ T + + + G +W + G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 553 HSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEIKNNASKFNSMFNS 607
H + + + P+ + D T RL+ + + N S+ S
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.7 bits (91), Expect = 8e-04
Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 4/104 (3%)
Query: 438 NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWN 497
+ L I + + + +L H A + A+ W +L S D + W+
Sbjct: 27 DATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLVSAS--QDGKLIIWD 83
Query: 498 VSSGACLDSIDTKSQ-VCALLWNSDYKELVSAHGFAQNQLIIWK 540
+ + +I +S V + + + K
Sbjct: 84 SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 86.4 bits (212), Expect = 8e-19
Identities = 55/332 (16%), Positives = 113/332 (34%), Gaps = 37/332 (11%)
Query: 275 IDWSHF-NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE 333
+ +S+ LA + ++ S + S + D ++
Sbjct: 68 VKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANK--------DPENLNTSSSPS 119
Query: 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVS--AKKKCRTMDGHDVRVGALAWNTYILS 391
+ + SV + +G L G +++WD+ D+ + L
Sbjct: 120 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 179
Query: 392 SGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQ 451
SGS + D+R+ + L DG+Y+A+G D + +W G
Sbjct: 180 SGSGDRTVRIWDLRTGQCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238
Query: 452 HTFS-TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT- 509
S + H+ +V ++ + +V++ G+ DR + WN+ + T
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVS---GSLDRSVKLWNLQNANNKSDSKTP 295
Query: 510 ------------KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARV 557
K V ++ + + ++S G ++ W S + L GH V
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILS--GSKDRGVLFWDKKSGNPLLMLQGHRNSV 353
Query: 558 LNLA------MSPDETTVLSAGADETLRLWKI 583
+++A + P+ + D R+WK
Sbjct: 354 ISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.3 bits (152), Expect = 3e-11
Identities = 50/317 (15%), Positives = 93/317 (29%), Gaps = 79/317 (24%)
Query: 320 IQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVR 379
+ ++ L+ VC V + +G L G T Q++ VS +
Sbjct: 47 LPREIDVELHKSLDHTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAA 105
Query: 380 VGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGND 439
+ + + + +SPDG++LA+G D
Sbjct: 106 NKDPEN-----------------------LNTSSSPSSDLYIRSVCFSPDGKFLATGAED 142
Query: 440 NLLNIWSGVPGQHTFSTQPIHSLSRHQ--------------------------------- 466
L+ IW + Q
Sbjct: 143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 202
Query: 467 --AAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT--------KSQVCAL 516
V +A P +A+G DR + W+ +G ++ +D+ K V ++
Sbjct: 203 IEDGVTTVAVSPGDGKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV 260
Query: 517 LWNSDYKELVSAHG----------FAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDE 566
++ D + +VS A N+ S GH VL++A + ++
Sbjct: 261 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 320
Query: 567 TTVLSAGADETLRLWKI 583
+LS D + W
Sbjct: 321 EYILSGSKDRGVLFWDK 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.2 bits (175), Expect = 3e-14
Identities = 29/184 (15%), Positives = 60/184 (32%), Gaps = 5/184 (2%)
Query: 319 CIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDV 378
+ D L L+G+ N +G + G+ ++++WDV T+ GH
Sbjct: 160 KVWDPETETCLHTLQGHTNRVYS-LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 218
Query: 379 RVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGN 438
+ IL SG+ + D+++ L + + + ++ + +
Sbjct: 219 LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD 278
Query: 439 DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG--GTADRHIYFW 496
D + +W G+ V I + V A G GT + +
Sbjct: 279 DGTVKLWDLKTGEF-IRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVL 336
Query: 497 NVSS 500
+
Sbjct: 337 DFDV 340
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.8 bits (169), Expect = 2e-13
Identities = 45/314 (14%), Positives = 101/314 (32%), Gaps = 35/314 (11%)
Query: 289 GSIYLWNGESD---------SNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVC 339
++ +W+ + + + + S +
Sbjct: 37 NTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGH 96
Query: 340 SVA---WIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRC 396
+ + G+ T+++WD+ + + GH V + ++ + SG+
Sbjct: 97 TSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD 156
Query: 397 GNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFST 456
+ D + + LQ HT V DG ++ SG D + +W +
Sbjct: 157 FMVKVWDPE-TETCLHTLQGHTNRVY--SLQFDGIHVVSGSLDTSIRVW------DVETG 207
Query: 457 QPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCAL 516
IH+L+ HQ+ + N+L SG AD + W++ +G CL ++ ++ +
Sbjct: 208 NCIHTLTGHQSLTSGMEL---KDNILVSG--NADSTVKIWDIKTGQCLQTLQGPNKHQSA 262
Query: 517 LWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL-----HGHSARVLNLAMSPDETTVLS 571
+ + + + +W + + L G V + S +
Sbjct: 263 VTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 322
Query: 572 AGADET----LRLW 581
+ T L +
Sbjct: 323 GSRNGTEETKLLVL 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (132), Expect = 6e-09
Identities = 45/252 (17%), Positives = 87/252 (34%), Gaps = 19/252 (7%)
Query: 332 LEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILS 391
L+G+++ G + G+ T+++W K RT+ GH V + I+
Sbjct: 12 LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIII 71
Query: 392 SGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQ 451
SGS + + + + + + + SG D L +W GQ
Sbjct: 72 SGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ 128
Query: 452 HTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKS 511
+ A+ + + SG D + W+ + CL ++ +
Sbjct: 129 CLHVLMGHVA---------AVRCVQYDGRRVVSGAY--DFMVKVWDPETETCLHTLQGHT 177
Query: 512 QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571
D +VS G + +W + + L GH + M + ++S
Sbjct: 178 NRVY-SLQFDGIHVVS--GSLDTSIRVWDVETGNCIHTLTGHQSLT--SGMELKDNILVS 232
Query: 572 AGADETLRLWKI 583
AD T+++W I
Sbjct: 233 GNADSTVKIWDI 244
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (128), Expect = 2e-08
Identities = 38/223 (17%), Positives = 76/223 (34%), Gaps = 20/223 (8%)
Query: 362 WDVSAKKKCRTMDGHDVRV-GALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQE 420
W K + + GHD V L + + SGS + + + L HT
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKC-LRTLVGHTGG 59
Query: 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPN 480
V + + + + + + + IH+L H + V+ +
Sbjct: 60 VWSSQMRDNIIISG--------STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 111
Query: 481 VLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWK 540
G+ D + W++ +G CL + + + G + +W
Sbjct: 112 S-----GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR---VVSGAYDFMVKVWD 163
Query: 541 YPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKI 583
+ + L GH+ RV + + D V+S D ++R+W +
Sbjct: 164 PETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIRVWDV 204
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.2 bits (170), Expect = 1e-13
Identities = 42/300 (14%), Positives = 83/300 (27%), Gaps = 44/300 (14%)
Query: 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVS-----AKKKCRTMDGHDV 378
R + L E VC+V + G G V++WD+S + D
Sbjct: 40 RHARQINTLNHGEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDN 98
Query: 379 RVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK----------- 425
+ + + L G + D+ + ++ + C
Sbjct: 99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS 158
Query: 426 ----------------------WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS 463
DG ND G+
Sbjct: 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218
Query: 464 RHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYK 523
+ I + P G ++ +V+ +S V +L + K
Sbjct: 219 QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK 278
Query: 524 ELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKI 583
VS N L W+ P + + S+ VL+ +S D+ +++ D+ ++++
Sbjct: 279 WFVSTG--KDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (149), Expect = 4e-11
Identities = 27/180 (15%), Positives = 53/180 (29%), Gaps = 10/180 (5%)
Query: 319 CIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDV 378
+ D + +G+ + S I L + +
Sbjct: 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS 225
Query: 379 RVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGN 438
++ +L + + + L H V LK++ G++ S G
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK 285
Query: 439 DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV 498
DNLLN W G F + + ++V + + +G G D+ + V
Sbjct: 286 DNLLNAWRTPYGASIFQS-------KESSSVLSCDISV-DDKYIVTGSG--DKKATVYEV 335
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.7 bits (166), Expect = 3e-13
Identities = 46/289 (15%), Positives = 98/289 (33%), Gaps = 49/289 (16%)
Query: 333 EGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSS 392
E ++ V + + + + G T+++WD + + R + GH V L ++ ++ +
Sbjct: 13 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIIT 70
Query: 393 GSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSP--------------DGRYLASGGN 438
GS + DV + + L+ + + + D
Sbjct: 71 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 130
Query: 439 DNLLNIWSGVPGQHTFSTQPIHSLS-----------------RHQAAVKAIAWCPWSPNV 481
+L F + I S S + IA + +
Sbjct: 131 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL 190
Query: 482 LASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541
+ SG ++D I W++ GACL ++ ++ + G ++ +W
Sbjct: 191 VVSG--SSDNTIRLWDIECGACLRVLEGHEELV---RCIRFDNKRIVSGAYDGKIKVWDL 245
Query: 542 PSLVK---------VAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ + + L HS RV + DE ++S+ D+T+ +W
Sbjct: 246 VAALDPRAPAGTLCLRTLVEHSGRVF--RLQFDEFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 9e-11
Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 11/144 (7%)
Query: 357 GTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQN 416
T+++W+ S + RT++GH + L + ++ SGS I D+ L
Sbjct: 158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC---LRVL 214
Query: 417 HTQEVCGLKWSPDGRYLASGGNDNLLNIW---SGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
E D + + SG D + +W + + + T + +L H V +
Sbjct: 215 EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ 274
Query: 474 WCPWSPNVLASGGGTADRHIYFWN 497
+ + S D I W+
Sbjct: 275 F---DEFQIVSSS--HDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.5 bits (129), Expect = 1e-08
Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 11/135 (8%)
Query: 319 CIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDV 378
+ + + + L G++ + ++ G+S T++LWD+ R ++GH+
Sbjct: 161 KVWNTSTCEFVRTLNGHKRGIAC-LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 219
Query: 379 RVGALAWNTYILSSGSRCGNIVHHDVRSRDHK--------VALLQNHTQEVCGLKWSPDG 430
V + ++ + SG+ G I D+ + + L H+ V L++ D
Sbjct: 220 LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DE 277
Query: 431 RYLASGGNDNLLNIW 445
+ S +D+ + IW
Sbjct: 278 FQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (98), Expect = 9e-05
Identities = 33/211 (15%), Positives = 65/211 (30%), Gaps = 44/211 (20%)
Query: 409 HKVALLQNHTQEVCGLK-WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA 467
H + + ++ G+ D + + SG DN + IW + + L+ H
Sbjct: 3 HSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWD------KNTLECKRILTGHTG 56
Query: 468 AVKAIAW-----------------------------------CPWSPNVLASGGGTADRH 492
+V + + N + DR
Sbjct: 57 SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS 116
Query: 493 IYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552
I W+++S + A + D+ + + +W + V L+G
Sbjct: 117 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG 176
Query: 553 HSARVLNLAMSPDETTVLSAGADETLRLWKI 583
H + + + V+S +D T+RLW I
Sbjct: 177 HKRGIAC--LQYRDRLVVSGSSDNTIRLWDI 205
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 65.3 bits (157), Expect = 6e-12
Identities = 22/205 (10%), Positives = 51/205 (24%), Gaps = 14/205 (6%)
Query: 385 WNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNI 444
+ + G I +D+ R A + D + L +L
Sbjct: 147 PLKHGETDGYVMQAIHVYDMEGRKIFAAT--TENSHDYAPAFDADSKNLYYLSYRSLDPS 204
Query: 445 WSGVPGQHTF-STQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG-- 501
V +F + + P S A D + ++
Sbjct: 205 PDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG 264
Query: 502 ---ACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVL 558
+ + + A + L+ + + ++ +
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPE--KGVLLKYDVKT----RKVTEVKNNLT 318
Query: 559 NLAMSPDETTVLSAGADETLRLWKI 583
+L +S D TV+ D + + +
Sbjct: 319 DLRLSADRKTVMVRKDDGKIYTFPL 343
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.9 bits (104), Expect = 2e-05
Identities = 10/117 (8%), Positives = 29/117 (24%), Gaps = 14/117 (11%)
Query: 338 VCSVAWIQEGYMLGVG----TSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT-----Y 388
+ G + R + + + +
Sbjct: 230 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA 289
Query: 389 ILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIW 445
G ++ +DV++R + + L+ S D + + +D + +
Sbjct: 290 YYQGAPEKGVLLKYDVKTRK-----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTF 341
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.2 bits (149), Expect = 5e-11
Identities = 9/87 (10%), Positives = 22/87 (25%), Gaps = 3/87 (3%)
Query: 411 VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVK 470
V + Q + +K P L D L ++ + R++ +
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA---KNVDLLQSLRYKHPLL 60
Query: 471 AIAWCPWSPNVLASGGGTADRHIYFWN 497
+ + + G +
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVDLI 87
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.4 bits (134), Expect = 3e-09
Identities = 28/278 (10%), Positives = 74/278 (26%), Gaps = 27/278 (9%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK---KCRTMDGHDVRVGALAWN---TYILS 391
+ + I +L + + G++ ++ + + + + +
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73
Query: 392 SGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQ 451
G+ G I+ D+ AL N L + D L+ +
Sbjct: 74 VGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133
Query: 452 HTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL------- 504
+ + + K S ++ + + ++ +
Sbjct: 134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG---MNNSQVQWFRLPLCEDDNGTIEES 190
Query: 505 -----------DSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH 553
+ + C+ + E G N + + +
Sbjct: 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250
Query: 554 SARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKK 591
+ V ++ SP + +AG+D + W + + K K
Sbjct: 251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 2e-04
Identities = 12/121 (9%), Positives = 28/121 (23%), Gaps = 6/121 (4%)
Query: 416 NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPG------QHTFSTQPIHSLSRHQAAV 469
Q + A D + + F+ + +
Sbjct: 192 LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA 251
Query: 470 KAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAH 529
+ +SP +D I WN+ + + + ++ + L A
Sbjct: 252 YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT 311
Query: 530 G 530
Sbjct: 312 S 312
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.002
Identities = 13/100 (13%), Positives = 31/100 (31%), Gaps = 8/100 (8%)
Query: 388 YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSG 447
N N V +++SP ++L + G+D +++ W
Sbjct: 221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW-- 278
Query: 448 VPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGG 487
+ + + I + ++ + S N+L
Sbjct: 279 ----NLQTRKKIKNFAKFNEDS-VVKIAC-SDNILCLATS 312
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.002
Identities = 17/131 (12%), Positives = 36/131 (27%), Gaps = 6/131 (4%)
Query: 292 YLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLG 351
D +SK +L D V S+ + L
Sbjct: 208 GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY 267
Query: 352 VGTSLGTVQLWDVSAKKKCRTMDGHD-VRVGALAWNTYILSSGSRCGNIVHHDVRSRDHK 410
S G + W++ +KK + + V +A + IL + + +
Sbjct: 268 TAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQT-- 325
Query: 411 VALLQNHTQEV 421
++ + +
Sbjct: 326 ---IELNASSI 333
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.5 bits (85), Expect = 0.004
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 550 LHGHSARVLNLAMSPDETTVLSAGADETLRLWKI 583
+ ++ + P ++ +L D +L ++K
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKF 40
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 59.8 bits (143), Expect = 3e-10
Identities = 18/297 (6%), Positives = 64/297 (21%), Gaps = 41/297 (13%)
Query: 322 DNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSL-GTVQLWDVSAKK------KCRTMD 374
+ + + + + V + G + D+ K
Sbjct: 26 ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG 85
Query: 375 GHDVRVGALAWNTY--ILSSGSRCGNIVHHDVRSRDHKVALLQNHTQE------------ 420
+ + A + + + ++ + ++ +
Sbjct: 86 EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR 145
Query: 421 -VCGLKWSPDGRYLASGGNDNLLNIWSGV----------PGQHTFSTQPI---HSLSRHQ 466
V ++ + DG +G + +++ +G + + + S
Sbjct: 146 QVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRH 205
Query: 467 AAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK--SQVCALLWNSDYKE 524
+ + ++ +G L +
Sbjct: 206 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN 265
Query: 525 LVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ N+L + + + +A + G L ++
Sbjct: 266 QIY---GVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVF 318
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 51.7 bits (122), Expect = 1e-07
Identities = 22/221 (9%), Positives = 54/221 (24%), Gaps = 15/221 (6%)
Query: 341 VAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMD-GHDVRVGALAWN---TYILSSGSRC 396
A + V + + DV++ ++ G +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 397 GNIVHHDVRSRDHKVALLQN-----HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQ 451
G+I D+ + + + + + SPDG+ + + N V
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 452 HTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGG----TADRHIYFWNVSSGACLDSI 507
+ +A P ++ + A IY +V +G ++
Sbjct: 122 PRLEV--FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVAL 179
Query: 508 DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVA 548
++ D +++
Sbjct: 180 PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK 220
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.7 bits (104), Expect = 2e-05
Identities = 21/178 (11%), Positives = 46/178 (25%), Gaps = 10/178 (5%)
Query: 276 DWSHFNVLAVALGGSIYLWNGE------SDSNSKYIICQSPLVQELTSKCIQDNRAIDHL 329
++ A GS+Y+ + + ++ S
Sbjct: 143 MPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQS 202
Query: 330 MDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDV-SAKKKCRTMDGHDVRVGALAWNTY 388
E + + + L D+ + K + +
Sbjct: 203 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK 262
Query: 389 ILSSGSRCGNIVH-HDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIW 445
+ N + +D++ R A +HT + + G L GG N L ++
Sbjct: 263 DPNQIYGVLNRLAKYDLKQRKLIKAANLDHT--YYCVAFDKKGDKLYLGGTFNDLAVF 318
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 39.0 bits (89), Expect = 0.001
Identities = 20/165 (12%), Positives = 44/165 (26%), Gaps = 16/165 (9%)
Query: 423 GLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482
G Y+ N L++ + + + + P +
Sbjct: 1 GPALKAGHEYMIVTNYPNNLHVVDVASDT-VYKSCVMP----DKFGPGTAMMAPDNRTAY 55
Query: 483 ASGGGTADRHIYFWNVSSGACLDSI-------DTKSQVCALLWNSDYKELVSAHGFAQNQ 535
IY ++ + + + + + D KE+ + Q
Sbjct: 56 VLNNH--YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL 113
Query: 536 LII--WKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETL 578
K P L + G A+ + P + ++ A D +L
Sbjct: 114 NDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL 158
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.9 bits (143), Expect = 4e-10
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 417 HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476
+ + W+ D +A N++ ++I+ + +H L H V + W P
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW----VQVHELKEHNGQVTGVDWAP 61
Query: 477 WSPNVLASGGGTADRHIYFWN 497
S N + + G DR+ Y W
Sbjct: 62 DS-NRIVTCG--TDRNAYVWT 79
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.1 bits (141), Expect = 6e-10
Identities = 26/267 (9%), Positives = 74/267 (27%), Gaps = 26/267 (9%)
Query: 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK--KCRTMDGHDVRVGALAW--NTYILS 391
E + AW ++ + + + V +++ S K + + H+ +V + W ++ +
Sbjct: 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67
Query: 392 SGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQ 451
+ N ++ R K L+ + G+ + + +
Sbjct: 68 TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 127
Query: 452 HTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKS 511
+ + + S ++ +
Sbjct: 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK----CRIFSAYIKEVEERPAPTP 183
Query: 512 QVCALLWNSDYKELVSAHG-----------------FAQNQLIIWKYPSLVKVAELHGHS 554
+ + E S+ G + + + + VA L +
Sbjct: 184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 243
Query: 555 ARVLNLAMSPDETTVLSAGADETLRLW 581
+L + + ++++AG D L+
Sbjct: 244 LPLLAVTFITES-SLVAAGHDCFPVLF 269
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.9 bits (117), Expect = 6e-07
Identities = 34/328 (10%), Positives = 91/328 (27%), Gaps = 23/328 (7%)
Query: 275 IDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL 332
+DW+ + ++ + Y+W K + + + N +
Sbjct: 57 VDWAPDSNRIVTCGTDRNAYVWT-LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG 115
Query: 333 EGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSS 392
++C + ++ + + + ++ YI
Sbjct: 116 SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEV 175
Query: 393 GSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQH 452
R + + V G+ +S +G +A +D+ + +
Sbjct: 176 EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA------D 229
Query: 453 TFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQ 512
+ +L+ + A+ + S +++A+G D + S A S +
Sbjct: 230 ADKKMAVATLASETLPLLAVTFITES-SLVAAG---HDCFPVLFTYDSAAGKLSFGGRLD 285
Query: 513 VCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDE----TT 568
V + + + H V +++ +
Sbjct: 286 VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQ 343
Query: 569 VLSAGADETLRLWKIFEKVKSKKKEIKN 596
+ G D + +W V+S + +K+
Sbjct: 344 FCTTGMDGGMSIW----DVRSLESALKD 367
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.3 bits (113), Expect = 2e-06
Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 513 VCALLWNSDYKELVSAHGFAQNQLIIWKYPS--LVKVAELHGHSARVLNLAMSPDETTVL 570
+ WN D ++ +++ I++ V+V EL H+ +V + +PD ++
Sbjct: 10 ISCHAWNKDRTQIAICPN--NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67
Query: 571 SAGADETLRLWKIF 584
+ G D +W +
Sbjct: 68 TCGTDRNAYVWTLK 81
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 58.3 bits (139), Expect = 9e-10
Identities = 30/289 (10%), Positives = 58/289 (20%), Gaps = 27/289 (9%)
Query: 320 IQDNRAIDHLMDLEGNENVCSVAWIQEG-YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDV 378
+ + + G ++ D+ + +D
Sbjct: 18 TEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP 77
Query: 379 RVGALAWNTYILSSGSRCGNIVHHDVRSRDH-----------------KVALLQNHTQEV 421
+ LS + I VR +++
Sbjct: 78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQI 137
Query: 422 CGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPI---HSLSRHQAAVKAIAWCPWS 478
L W+ DG L G D + Q AV
Sbjct: 138 TMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGV 197
Query: 479 PNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLII 538
+G ++T + D +A A+ +
Sbjct: 198 MATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG 257
Query: 539 WKYPSLV------KVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ ++ +S D +TV GA L +
Sbjct: 258 AYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAY 306
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.9 bits (112), Expect = 2e-06
Identities = 24/201 (11%), Positives = 57/201 (28%), Gaps = 12/201 (5%)
Query: 275 IDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEG 334
+ W+ LG +++ + E+ + + QS + D A+ + + G
Sbjct: 140 LAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQ---PDVLAVWNQHESSG 196
Query: 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDV-SAKKKCRTMDGHDVRVGALAWNTYILSSG 393
++ + D+ + + R + DV + A N +
Sbjct: 197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF 256
Query: 394 SRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHT 453
+ D+ + + S DG + GG L +
Sbjct: 257 GAYNVLESFDLEK--NASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD------A 308
Query: 454 FSTQPIHSLSRHQAAVKAIAW 474
+ + + A ++A
Sbjct: 309 ETLEKKGQVDLPGNASMSLAS 329
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.0 bits (102), Expect = 3e-05
Identities = 20/241 (8%), Positives = 52/241 (21%), Gaps = 29/241 (12%)
Query: 352 VGTSLGTVQLWDVSAKKKCRTMDGHDV--RVGALAWN---TYILSSGSRCGNIVHHDVRS 406
+ + D + + D ++ ++ ++V D+ +
Sbjct: 6 APARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT 65
Query: 407 ----RDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL 462
++ + + + G SPDG+ LA + L + + +L
Sbjct: 66 GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL 125
Query: 463 SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDY 522
+ +Y D + L+ +
Sbjct: 126 -------SRRKAFEAPRQITMLAWARDGSKLYGLGR------DLHVMDPEAGTLVEDKPI 172
Query: 523 KELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWK 582
+ + + L +W D L
Sbjct: 173 QSWEAETYAQPDVLAVW-------NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225
Query: 583 I 583
+
Sbjct: 226 L 226
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.7 bits (140), Expect = 9e-10
Identities = 34/346 (9%), Positives = 94/346 (27%), Gaps = 66/346 (19%)
Query: 289 GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWI-QEG 347
G + +W+ + + + + H L + + ++ E
Sbjct: 34 GYLKVWDNKLL--------------DNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL 79
Query: 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDV----------RVGALAWNT-------YIL 390
++ + G + + ++ + + + + + AL W + L
Sbjct: 80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL 139
Query: 391 SSGSRCGNIVHHDVRSRDH-----------------KVALLQNHTQEVCGLKWSPDGRYL 433
+ G V +Q + S G +
Sbjct: 140 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LI 198
Query: 434 ASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHI 493
A+G N+ + I + ++ + HS+ + +++++ + P + + + I
Sbjct: 199 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI 258
Query: 494 YFWNVSSGACLDSIDTKSQVCALLWNSDYKE------------LVSAHGFAQNQLIIWKY 541
+ G + S+ + +L W
Sbjct: 259 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 318
Query: 542 PSLVKVAELHGHSARV----LNLAMSPDETTVLSAGADETLRLWKI 583
+ ++ L+ H + LA+ ++ G + L K
Sbjct: 319 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 364
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 1e-07
Identities = 9/103 (8%), Positives = 29/103 (28%), Gaps = 10/103 (9%)
Query: 411 VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVK 470
+ H ++ + + S D L +W + +S H++ +
Sbjct: 7 ANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64
Query: 471 AIAWCPWSP------NVLASGGGTADRHIYFWNVSSGACLDSI 507
+ ++A+ + F+ ++ +
Sbjct: 65 HVDVLQAIERDAFELCLVATTS--FSGDLLFYRITREDETKKV 105
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 1e-07
Identities = 35/341 (10%), Positives = 98/341 (28%), Gaps = 55/341 (16%)
Query: 275 IDWSHFNVLAVALG---GSIYLWNGESDSNSKYIICQSPLVQELTSK---------CIQD 322
I+ F + VA G + + + +K +I + + + K +
Sbjct: 72 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131
Query: 323 NRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGA 382
+R + H + + + +L ++ + + +
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL--QGTVESPMTPSQFATS 189
Query: 383 LAWN-TYILSSGSRCGNI-----VHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASG 436
+ + ++++G G + + N++ + +K+SP G LA
Sbjct: 190 VDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 249
Query: 437 GNDNLLNIWSG----------VPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486
+ N + T S+Q H + V ++++ +
Sbjct: 250 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC---S 306
Query: 487 GTADRHIYFWNVSSGACLDSIDT-----KSQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541
D + FW+V + + +++ + + L + L F +
Sbjct: 307 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD-----VKFL 361
Query: 542 PSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWK 582
+ + ++ D ++R ++
Sbjct: 362 KKGWRSGMGADLN------------ESLCCVCLDRSIRWFR 390
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 5e-06
Identities = 26/252 (10%), Positives = 69/252 (27%), Gaps = 44/252 (17%)
Query: 374 DGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEV------------ 421
HD + +++ S S G + D + D++ ++++ V
Sbjct: 11 KAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70
Query: 422 CGLKWSPDGRYLASGGNDNLLNIWSGVPGQHT----FSTQPIHSLSRHQAAVKAIAWCPW 477
+ + + +A+ L + T F + + + A+ W
Sbjct: 71 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130
Query: 478 SPNVLAS--GGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQ 535
+ +L+ Y W A + T + L
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG--------------- 175
Query: 536 LIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEIK 595
V S ++ +S + + + T+++ ++ E +
Sbjct: 176 ----------TVESPMTPSQFATSVDISER-GLIATGFNNGTVQISELSTLRPLYNFESQ 224
Query: 596 NNASKFNSMFNS 607
++ ++ S
Sbjct: 225 HSMINNSNSIRS 236
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.003
Identities = 29/222 (13%), Positives = 66/222 (29%), Gaps = 10/222 (4%)
Query: 233 IKILSNTSKTPMGSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALG-GSI 291
I + T + P + + + +D S ++A G++
Sbjct: 148 TYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTV 207
Query: 292 YLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLG 351
+ + Q ++ S L+ + + N + E
Sbjct: 208 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-- 265
Query: 352 VGTSLGTVQLWDVSAKKKCRTMDGHD-VRVGALAWNTYILSSGSRCGNIVHHDVRSRDHK 410
G +G++ + S++ V + + L S G + DV++++
Sbjct: 266 -GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER- 323
Query: 411 VALLQNHTQEV----CGLKWSPDGRYLASGGNDNLLNIWSGV 448
+ L H ++ L G LA G ++ + G
Sbjct: 324 ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 365
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.1 bits (133), Expect = 3e-09
Identities = 37/290 (12%), Positives = 75/290 (25%), Gaps = 38/290 (13%)
Query: 332 LEG-NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTM-DGHDVRVGALAWNTYI 389
G N+ + +++ +G L + G + WD+S R D H + + +
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67
Query: 390 -LSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGV 448
L + S ++ + + L + +
Sbjct: 68 DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 127
Query: 449 PGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID 508
S + +A V A V
Sbjct: 128 GKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF 187
Query: 509 TKSQVCALLWNSDYKELV---------------------------------SAHGFAQNQ 535
+ + + + K + A G N
Sbjct: 188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 247
Query: 536 LIIW--KYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKI 583
+I+W PS + H+ +N + +ETT++SAG D ++ W +
Sbjct: 248 VIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.7 bits (98), Expect = 7e-05
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 543 SLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKI 583
S+ +V +GH+ + L+ S D T+ SA A+ + W I
Sbjct: 3 SIDQV--RYGHNKAITALSSSADGKTLFSADAEGHINSWDI 41
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.0 bits (91), Expect = 5e-04
Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 7/115 (6%)
Query: 385 WNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNI 444
+ + SR HT +V + WSPD LA+G DN + +
Sbjct: 191 GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV 250
Query: 445 WSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS 499
W+ I + ++V ++ W + S G D +I FWNV
Sbjct: 251 WNMNKPS---DHPIIIKGAHAMSSVNSVIWLN--ETTIVSAG--QDSNIKFWNVP 298
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 54.4 bits (129), Expect = 2e-08
Identities = 34/263 (12%), Positives = 75/263 (28%), Gaps = 30/263 (11%)
Query: 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRS 406
+ G V+++D ++ D + ++ S + G + S
Sbjct: 68 FSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL-TPDGKTLLFYQFS 126
Query: 407 RDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSG-----VPGQHTFSTQPIHS 461
V ++ + + PD ++ D V + + H+
Sbjct: 127 PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT 186
Query: 462 LSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID---TKSQVCALLW 518
H I +S T I+ ++SSG A W
Sbjct: 187 EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW 246
Query: 519 NSDYKELVS------------------AHGFAQNQLIIWKYPSLVKVAELHGHSARVLNL 560
+ V+ H A +++ + ++A+ + ++
Sbjct: 247 RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSI 305
Query: 561 AMSPDETTVL--SAGADETLRLW 581
+S DE +L + D+TL +
Sbjct: 306 NVSQDEKPLLYALSTGDKTLYIH 328
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.7 bits (109), Expect = 4e-06
Identities = 16/172 (9%), Positives = 38/172 (22%), Gaps = 14/172 (8%)
Query: 423 GLKWSPDGRYLA----------SGGNDNLLNIWSGVPGQHTFS-TQPIHSLSRHQAAVKA 471
+ DG ++A G + + ++ V T P
Sbjct: 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWM 110
Query: 472 IAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGF 531
+ P L + + ++ A +D D + G
Sbjct: 111 TSLTPD-GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGS 169
Query: 532 AQNQLIIWKYPSLVKVAELH--GHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ + E+ + + A S ++ +
Sbjct: 170 LAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQI 221
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.3 bits (108), Expect = 6e-06
Identities = 29/225 (12%), Positives = 62/225 (27%), Gaps = 25/225 (11%)
Query: 362 WDVSAKKKCRTMDGH-DVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQE 420
D+ K R +D + A +T+ + V H ++
Sbjct: 134 VDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED 193
Query: 421 ---VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW 477
+ +S L ++ G F + ++ A +A W P
Sbjct: 194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKF----LPAVEALTEAERADGWRPG 249
Query: 478 SPNVLASGG-----------------GTADRHIYFWNVSSGACLDSIDTKSQVCALLWNS 520
+A TA R + + +G L + ++ ++ +
Sbjct: 250 GWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQ 309
Query: 521 DYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPD 565
D K L+ A L I S ++ ++ + +
Sbjct: 310 DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.1 bits (97), Expect = 1e-04
Identities = 20/247 (8%), Positives = 50/247 (20%), Gaps = 19/247 (7%)
Query: 351 GVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN-TYILSSGSRCGNIVHHDVRSRDH 409
++ + D A + +DG + +A + ++I + + I R
Sbjct: 22 AHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIAR---GERTD 78
Query: 410 KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNI-WSGVPGQHTFSTQPIHSLSRHQAA 468
V + T PD G + ++ G +
Sbjct: 79 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG 138
Query: 469 VKAIAWCPWSPNVLASGGG-------TADRHIYFWNVSSGACLDSIDTKSQ-------VC 514
D + + + T+ +
Sbjct: 139 KAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLIN 198
Query: 515 ALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGA 574
++ LV + I + + + P ++
Sbjct: 199 HPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR 258
Query: 575 DETLRLW 581
Sbjct: 259 ALDRIYL 265
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.8 bits (127), Expect = 2e-08
Identities = 23/203 (11%), Positives = 47/203 (23%), Gaps = 3/203 (1%)
Query: 244 MGSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSK 303
+ LT D L + + + + + + E ++
Sbjct: 86 ASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQV 145
Query: 304 YIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWD 363
+ + + +L + I + I +
Sbjct: 146 FKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRT 205
Query: 364 VSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423
+ + +GS NI + V+ + L H V
Sbjct: 206 SKINAISWKPAEKGANEEEIEEDLVA--TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNN 263
Query: 424 LKWSPDGRYLASGGNDNLLNIWS 446
L W L S G D + W+
Sbjct: 264 LLWETPST-LVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.3 bits (97), Expect = 1e-04
Identities = 28/247 (11%), Positives = 58/247 (23%), Gaps = 10/247 (4%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCG 397
+ S+ + + A + +
Sbjct: 49 IVSLDNSKAQEYSS-----ISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDL 103
Query: 398 NIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQ 457
I+ V L + + G + L+ T
Sbjct: 104 LILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA 163
Query: 458 PIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALL 517
+S + A +L + + +S S +
Sbjct: 164 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE 223
Query: 518 WNSDYKELVSAHGFAQNQLIIWKYPSLVK-VAELHGHSARVLNLAMSPDETTVLSAGADE 576
+ A G + I+ +K + L+ H V NL T ++S+GAD
Sbjct: 224 EIEEDLV---ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADA 279
Query: 577 TLRLWKI 583
++ W +
Sbjct: 280 CIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.4 bits (87), Expect = 0.002
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 8/110 (7%)
Query: 368 KKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWS 427
+ +T+ GH+ + AL N L SGS G I+ S Q+H+ + L S
Sbjct: 4 EVLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSSM------HQDHSNLIVSLDNS 55
Query: 428 PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW 477
Y + +D L + + A +
Sbjct: 56 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI 105
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.3 bits (124), Expect = 9e-08
Identities = 14/256 (5%), Positives = 44/256 (17%), Gaps = 43/256 (16%)
Query: 334 GNENVCSVAWIQEGYMLGVGTSL-GTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSS 392
V + L V +
Sbjct: 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASC-FHIHPGAAATHYL 180
Query: 393 GSRCGNIV-----HHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSG 447
GS ++ + + + G + + + L
Sbjct: 181 GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPA 240
Query: 448 VPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI 507
++ +++ KA + ++A + +
Sbjct: 241 A------GATMKAAIDGNESGRKADNFRSAGFQMVA---KLKNTDGIMILTVEHS----- 286
Query: 508 DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET 567
+ A + + + + D
Sbjct: 287 -------------------RSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGA 326
Query: 568 TVL--SAGADETLRLW 581
+ ++ E L ++
Sbjct: 327 SDNYANSAGTEVLDIY 342
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.3 bits (93), Expect = 5e-04
Identities = 17/174 (9%), Positives = 31/174 (17%), Gaps = 19/174 (10%)
Query: 423 GLKWSPDGRYLA----------SGGNDNLLNIWSGVPGQHTFST-QPIHSLSRHQAAVKA 471
G A G + + ++ V P V
Sbjct: 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHI 128
Query: 472 IAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGF 531
I C S +L G +V + + S C +
Sbjct: 129 IGNCASSACLLFFLFG--SSAAAGLSVPGASDDQLTKSAS--CFHIHPGAAATHYLGSCP 184
Query: 532 AQNQLIIW----KYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
A +V + + V + +
Sbjct: 185 ASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDI 238
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.4 bits (121), Expect = 2e-07
Identities = 40/303 (13%), Positives = 86/303 (28%), Gaps = 51/303 (16%)
Query: 332 LEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYI 389
L G+ E + G ++++D KK + GHD V AL + +
Sbjct: 8 LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 67
Query: 390 LSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWS--- 446
+S + V + V N T + + +Y+ +G DN L++W
Sbjct: 68 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 127
Query: 447 ----GVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG-----GTADRHIYFWN 497
G+ H+ + V + S ++ G G+ D + W+
Sbjct: 128 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWD 187
Query: 498 VSSGACLDSIDTKSQVCALLWNSDYKELVSAHG--------------------------- 530
V+ CL + + ++ +
Sbjct: 188 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG 247
Query: 531 ----------FAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRL 580
A I + + + H + + +L +G++ +
Sbjct: 248 LLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNI 307
Query: 581 WKI 583
+ +
Sbjct: 308 YNL 310
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (103), Expect = 3e-05
Identities = 36/308 (11%), Positives = 80/308 (25%), Gaps = 17/308 (5%)
Query: 275 IDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEG 334
+ ++H +L ++ N +
Sbjct: 59 LKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118
Query: 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGS 394
+V + G V + GH V ++ + I+ SGS
Sbjct: 119 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 178
Query: 395 RCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTF 454
++ DV +L HT + + + + S D + IW G+ +
Sbjct: 179 YDNTLIVWDVAQMKCL-YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 237
Query: 455 STQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVC 514
+ Q +L + ++ + +
Sbjct: 238 TLQGHTALVGLLRLSDKFLVSAAAD------------GSIRGWDANDYSRKFSYHHTNLS 285
Query: 515 ALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKV-AELHGHSARVLNLAMSPDETTVLSAG 573
A+ ++ + +NQ I+ S V A + + ++ ++ T V +
Sbjct: 286 AITTFYVSDNILVSGS--ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVE 342
Query: 574 ADETLRLW 581
D L
Sbjct: 343 KDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 5e-05
Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 6/125 (4%)
Query: 460 HSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT-KSQVCALLW 518
+L H +V I + N + +G D+ I ++ + L + V AL +
Sbjct: 6 TTLRGHMTSV--ITCLQFEDNYVITGA--DDKMIRVYDSINKKFLLQLSGHDGGVWALKY 61
Query: 519 NSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETL 578
LVS ++ K V E H + R L++ + +++ D TL
Sbjct: 62 AHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 120
Query: 579 RLWKI 583
+WK+
Sbjct: 121 HVWKL 125
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 50.9 bits (121), Expect = 3e-07
Identities = 29/238 (12%), Positives = 63/238 (26%), Gaps = 17/238 (7%)
Query: 357 GTVQLWDVSAKKKCRTMD-GHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVAL-- 413
G + L D S + +D G+ V + L+ + L R G + D+ ++
Sbjct: 42 GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI 101
Query: 414 --LQNHTQEVCGLKWSPDGRYL-ASGGNDNLLNIWSG-----VPGQHTFSTQPIHSLSRH 465
+ +Y A I G Q T
Sbjct: 102 KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHP 161
Query: 466 QAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL--DSIDTKSQVCALLWNSDYK 523
+ V AI + P + + T I + + L I + + + ++
Sbjct: 162 EPRVAAILASHYRPEFIVNVKETG--KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR 219
Query: 524 ELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
++A ++ K+ + + + + T +
Sbjct: 220 YFITAANARNK--LVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMG 275
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 44.4 bits (104), Expect = 3e-05
Identities = 26/206 (12%), Positives = 58/206 (28%), Gaps = 27/206 (13%)
Query: 406 SRDHKVALLQNHTQEV----------CGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS 455
++AL+ T E+ + S GRYL G D +N+ + T
Sbjct: 39 RDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT- 97
Query: 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLD---------- 505
I S ++ + +A + +
Sbjct: 98 VAEIKIGSEARSIETSKMEGWEDKYAIAGAYW--PPQYVIMDGETLEPKKIQSTRGMTYD 155
Query: 506 --SIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLN-LAM 562
+ +V A+L + E + ++++ Y L + + R L+ +
Sbjct: 156 EQEYHPEPRVAAILASHYRPEFIVN-VKETGKILLVDYTDLNNLKTTEISAERFLHDGGL 214
Query: 563 SPDETTVLSAGADETLRLWKIFEKVK 588
++A + ++ K
Sbjct: 215 DGSHRYFITAANARNKLVVIDTKEGK 240
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.5 bits (116), Expect = 5e-07
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
H+ V GL WSPDG +AS D + IW+ + + ++
Sbjct: 234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWN------VATLKVEKTIPVGTRIEDQQL 287
Query: 474 WCPWSPNVLASGGGTADRHIYFWN 497
W+ L S A+ I F N
Sbjct: 288 GIIWTKQALVSIS--ANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.4 bits (113), Expect = 1e-06
Identities = 29/235 (12%), Positives = 60/235 (25%), Gaps = 3/235 (1%)
Query: 352 VGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNI-VHHDVRSRD 408
+ +V V + H + + Y +SG GN+ + ++
Sbjct: 33 QYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 92
Query: 409 HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAA 468
+ + V + W + + +A+ G + T + +
Sbjct: 93 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSV 152
Query: 469 VKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSA 528
+ + F S+ +
Sbjct: 153 DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT 212
Query: 529 HGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKI 583
+ HS V L SPD T + SA AD+T+++W +
Sbjct: 213 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 267
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.0 bits (107), Expect = 6e-06
Identities = 43/277 (15%), Positives = 83/277 (29%), Gaps = 28/277 (10%)
Query: 281 NVLAVALGGSIYLWNGESDSNSK---------YIICQSPLVQELTS-------------K 318
+ + G S+Y S ++++ + SP S +
Sbjct: 30 DKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ 89
Query: 319 CIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDV 378
+ + + + + G V L+D T +
Sbjct: 90 TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAM 149
Query: 379 RVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGN 438
+ N V + HT+ V ++++PDG AS G
Sbjct: 150 NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG 209
Query: 439 DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV 498
D + +++GV G T + + + +AS AD+ I WNV
Sbjct: 210 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS--ADKTIKIWNV 267
Query: 499 SSGACLDSIDT----KSQVCALLWNSDYKELVSAHGF 531
++ +I + Q ++W +SA+GF
Sbjct: 268 ATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.2 bits (97), Expect = 1e-04
Identities = 13/98 (13%), Positives = 24/98 (24%), Gaps = 3/98 (3%)
Query: 509 TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETT 568
+ L ++ +G + SL HS + SP
Sbjct: 16 ARGTAVVLGNTPAGDKIQYCNG---TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYY 72
Query: 569 VLSAGADETLRLWKIFEKVKSKKKEIKNNASKFNSMFN 606
S +R+W + K I + +
Sbjct: 73 CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW 110
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.9 bits (91), Expect = 7e-04
Identities = 10/76 (13%), Positives = 21/76 (27%)
Query: 370 CRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPD 429
V + + ++S S I +V + + + E L
Sbjct: 233 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 292
Query: 430 GRYLASGGNDNLLNIW 445
+ L S + +N
Sbjct: 293 KQALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 37.6 bits (85), Expect = 0.003
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 339 CSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGH---DVRVGALAWNTYILSSGSR 395
+ W +G + ++ T+++W+V+ K +T+ + + + W L S S
Sbjct: 242 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 301
Query: 396 CGNI 399
G I
Sbjct: 302 NGFI 305
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 5e-07
Identities = 29/267 (10%), Positives = 71/267 (26%), Gaps = 18/267 (6%)
Query: 333 EGNENVCSVAW--IQEGYMLGVGTSLGTVQLWDVSAKKKCRTM--------DGHDVRVGA 382
G+ V +V + I+ L G G V +W + K+ ++ +
Sbjct: 61 HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD 120
Query: 383 LAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGND 439
++W+ + G N + + + H+Q + + D
Sbjct: 121 ISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD 180
Query: 440 NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS 499
+ ++ P ++ H + +
Sbjct: 181 DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF 240
Query: 500 SGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS--LVKVAELHGHSARV 557
D + L D ++ + A + +W + V+ L
Sbjct: 241 LKYIEDDQEPVQGGIFALSWLDSQKFATVG--ADATIRVWDVTTSKCVQKWTLDKQQLGN 298
Query: 558 LNLAMSPD-ETTVLSAGADETLRLWKI 583
+ + ++S D TL +++
Sbjct: 299 QQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.2 bits (97), Expect = 1e-04
Identities = 19/144 (13%), Positives = 41/144 (28%), Gaps = 16/144 (11%)
Query: 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQ-AAVKAIAWCPW-S 478
L + P +A + P+ + H + V + + P
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDS---KVPPVVQFTGHGSSVVTTVKFSPIKG 76
Query: 479 PNVLASGGGTADRHIYFWNVSSGACLDSIDT---------KSQVCALLWNSDYKELVSAH 529
L SG + W + +S++ + + W+ + + L
Sbjct: 77 SQYLCSGD--ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 134
Query: 530 GFAQNQLIIWKYPSLVKVAELHGH 553
N + + S + E+ GH
Sbjct: 135 EGRDNFGVFISWDSGNSLGEVSGH 158
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 46.4 bits (108), Expect = 5e-06
Identities = 27/252 (10%), Positives = 66/252 (26%), Gaps = 10/252 (3%)
Query: 332 LEGNENVCSVAWIQEG-YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYIL 390
+ N +G + V + D + T+ G
Sbjct: 28 IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQ 87
Query: 391 SSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPG 450
+ + + + + VA + GL SPDG+ L N +
Sbjct: 88 VYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT 147
Query: 451 QHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK 510
+ +T + + A + I + + + +D++ +
Sbjct: 148 KAVINTVSVGRSPKGIAVTPDGTKVYVANFD--------SMSISVIDTVTNSVIDTVKVE 199
Query: 511 SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVL 570
+ + N + + + + K+ +A++PD V
Sbjct: 200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVY 259
Query: 571 -SAGADETLRLW 581
+ T+ +
Sbjct: 260 VALSFCNTVSVI 271
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 43.8 bits (102), Expect = 4e-05
Identities = 24/203 (11%), Positives = 55/203 (27%), Gaps = 13/203 (6%)
Query: 380 VGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGND 439
+ L + G I D S+ K+ + + V + S GRYL G D
Sbjct: 25 LNDLDLPNLFSVTLRDAGQIALVDGDSK--KIVKVIDTGYAVHISRMSASGRYLLVIGRD 82
Query: 440 NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV- 498
+++ + T I ++ + +A I
Sbjct: 83 ARIDMIDLWAKEPT-KVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL 141
Query: 499 ---------SSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE 549
+ + +V A++ + ++ E + L++
Sbjct: 142 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT 201
Query: 550 LHGHSARVLNLAMSPDETTVLSA 572
G + + + ++A
Sbjct: 202 SIGAAPFLADGGWDSSHRYFMTA 224
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 37.4 bits (85), Expect = 0.004
Identities = 17/139 (12%), Positives = 48/139 (34%), Gaps = 8/139 (5%)
Query: 394 SRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLA------SGGNDNLLNIWSG 447
C ++ HD++S + + ++ + ++ PDGR +A S N L ++G
Sbjct: 18 VCCDDLWEHDLKSGSTR--KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG 75
Query: 448 VPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI 507
G+ T + + + P ++++ + ++ +
Sbjct: 76 ENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV 135
Query: 508 DTKSQVCALLWNSDYKELV 526
+ +D + ++
Sbjct: 136 PLNLGPATHILFADGRRVI 154
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 609 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.92 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.91 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.89 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.88 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.88 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.86 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.85 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.85 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.84 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.83 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.78 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.77 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.73 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.69 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.68 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.67 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.63 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.57 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.54 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.52 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.5 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.43 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.21 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.18 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.13 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.11 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.06 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.02 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.99 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.98 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.96 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.96 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.77 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.77 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.77 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.76 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.75 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.66 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.59 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.53 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 98.47 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.38 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.36 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.29 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.18 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.09 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.07 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.94 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.74 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.42 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.28 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.24 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.23 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.19 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.19 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.12 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.94 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.83 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.75 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.61 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.5 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.13 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.95 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 95.82 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 95.81 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.18 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 94.77 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.62 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 94.6 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.46 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.22 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.12 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 92.14 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 91.83 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 87.07 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 83.83 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-37 Score=319.11 Aligned_cols=282 Identities=21% Similarity=0.287 Sum_probs=241.8
Q ss_pred cCCceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeee-cCCCCeEEEEE
Q psy4876 266 IQNDYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL-EGNENVCSVAW 343 (609)
Q Consensus 266 ~~~~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~h~~~V~~v~~ 343 (609)
+.....|.+|+|+|++ +|+.+.||.|+|||+..... ......... .|.+.|.+++|
T Consensus 48 ~~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~----------------------~~~~~~~~~~~h~~~I~~v~~ 105 (337)
T d1gxra_ 48 LNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGN----------------------KSPVSQLDCLNRDNYIRSCKL 105 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTC----------------------CSCSEEEECSCTTSBEEEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcc----------------------cceeEEeeecCCCCcEEEEEE
Confidence 3345568999999997 66667799999999987211 111122222 38899999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCC--CeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 344 IQEGYMLGVGTSLGTVQLWDVSA--KKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 344 spdg~~Lasgs~dg~I~iwd~~~--~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
+|+|++|++|+.||.|++||+.. .+....+..|...+.+++| ++.++++++.|+.|.+|++.+. ........|..
T Consensus 106 s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~-~~~~~~~~~~~ 184 (337)
T d1gxra_ 106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTD 184 (337)
T ss_dssp CTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSS
T ss_pred cCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 99999999999999999999874 4566778899999999999 5789999999999999999987 57778889999
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS 499 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~ 499 (609)
.|.+++|++++.++++|+.|+.|++||++++ +.+..+ .|...|.+++|+|++. ++++|+ .|+.|++||+.
T Consensus 185 ~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~------~~~~~~-~~~~~i~~l~~~~~~~-~l~~~~--~d~~i~i~d~~ 254 (337)
T d1gxra_ 185 GASCIDISNDGTKLWTGGLDNTVRSWDLREG------RQLQQH-DFTSQIFSLGYCPTGE-WLAVGM--ESSNVEVLHVN 254 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTT------EEEEEE-ECSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETT
T ss_pred ccccccccccccccccccccccccccccccc------eeeccc-ccccceEEEEEccccc-ccceec--ccccccccccc
Confidence 9999999999999999999999999999987 555555 4788999999999885 555653 79999999999
Q ss_pred CCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEE
Q psy4876 500 SGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLR 579 (609)
Q Consensus 500 t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~ 579 (609)
+++......+...|.+++|+|++++|+++ +.||.|++||+.+++.+..+. |...|.+++|+|++++|++|+.||+|+
T Consensus 255 ~~~~~~~~~~~~~i~~v~~s~~g~~l~s~--s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~ 331 (337)
T d1gxra_ 255 KPDKYQLHLHESCVLSLKFAYCGKWFVST--GKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKAT 331 (337)
T ss_dssp SSCEEEECCCSSCEEEEEECTTSSEEEEE--ETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred ccccccccccccccceEEECCCCCEEEEE--eCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 99988777777899999999999999984 489999999999999988764 788999999999999999999999999
Q ss_pred EEEc
Q psy4876 580 LWKI 583 (609)
Q Consensus 580 iWdl 583 (609)
|||+
T Consensus 332 vWdl 335 (337)
T d1gxra_ 332 VYEV 335 (337)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.4e-36 Score=302.02 Aligned_cols=276 Identities=25% Similarity=0.406 Sum_probs=249.8
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|++|+|+|++ +++++.||+|+|||+.+ +.. +.++. |...|.+++|++
T Consensus 17 ~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~-------------------------~~~--~~~~~~h~~~V~~~~~~~ 69 (317)
T d1vyhc1 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYET-------------------------GDF--ERTLKGHTDSVQDISFDH 69 (317)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTT-------------------------CCC--CEEECCCSSCEEEEEECT
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-------------------------CCE--EEEEeCCCCcEEEEeeec
Confidence 3469999999986 66788999999999988 543 33455 899999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
++.+++++..++.+.+|+....+....+.+|...+.++.| ++..+++++.|+.+.+||++++ ..+..+.+|...+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 148 (317)
T d1vyhc1 70 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-YCVKTFTGHREWVRM 148 (317)
T ss_dssp TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEE
T ss_pred ccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccc-eeeeEEccCCCccee
Confidence 9999999999999999999999999999999999999999 5789999999999999999987 477888999999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCC-------------------cEEEE
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSP-------------------NVLAS 484 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-------------------~llas 484 (609)
++|++++.+|++++.|+.|++|++.++ ..+..+..|...+.+++|+|++. .++++
T Consensus 149 ~~~~~~~~~l~~~~~d~~v~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (317)
T d1vyhc1 149 VRPNQDGTLIASCSNDQTVRVWVVATK------ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222 (317)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred eecccCCCEEEEEeCCCeEEEEeeccc------eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEe
Confidence 999999999999999999999999988 77888899999999999988643 24566
Q ss_pred EeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEe
Q psy4876 485 GGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMS 563 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~s 563 (609)
+ +.|+.|++||+.+++++..+..+ ..|.+++|+|++++|+++ +.||.|+|||+.+++.+..+.+|.+.|++++|+
T Consensus 223 ~--~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s 298 (317)
T d1vyhc1 223 G--SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC--ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 298 (317)
T ss_dssp E--ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEE--ETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC
T ss_pred c--cCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEE--ECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 5 48999999999999999998765 589999999999999984 489999999999999999999999999999999
Q ss_pred CCCCEEEEEECCCCEEEEE
Q psy4876 564 PDETTVLSAGADETLRLWK 582 (609)
Q Consensus 564 pdg~~L~s~s~Dg~I~iWd 582 (609)
|++++|++|+.||+|+|||
T Consensus 299 ~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 299 KTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEeCCCeEEEeC
Confidence 9999999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.3e-35 Score=301.08 Aligned_cols=274 Identities=17% Similarity=0.252 Sum_probs=230.3
Q ss_pred EEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEE
Q psy4876 273 NLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLG 351 (609)
Q Consensus 273 ~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~La 351 (609)
.+++++|++ .++.+.++.|++|++.+ .....+.. .|...|++++|+|+|++||
T Consensus 21 ~~~a~~~~g~~l~~~~~~~v~i~~~~~-------------------------~~~~~~~~-~H~~~v~~~~~sp~g~~la 74 (311)
T d1nr0a1 21 VVLGNTPAGDKIQYCNGTSVYTVPVGS-------------------------LTDTEIYT-EHSHQTTVAKTSPSGYYCA 74 (311)
T ss_dssp CCCEECTTSSEEEEEETTEEEEEETTC-------------------------SSCCEEEC-CCSSCEEEEEECTTSSEEE
T ss_pred EEEEEcCCCCEEEEEeCCEEEEEECCC-------------------------CceeEEEc-CCCCCEEEEEEeCCCCeEe
Confidence 357889986 77777899999999987 54444432 2899999999999999999
Q ss_pred EEeCCCeEEEEeCCCCee--EEEecCCCCceEEEEec--CCEEEEEec--CCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 352 VGTSLGTVQLWDVSAKKK--CRTMDGHDVRVGALAWN--TYILSSGSR--CGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 352 sgs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~~--~~~L~sgs~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
+|+.||.|+|||+.+++. ...+..|...|.+++|+ +.+|++++. +..+.+|++.++ .....+.+|...|.+++
T Consensus 75 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~-~~~~~l~~h~~~v~~v~ 153 (311)
T d1nr0a1 75 SGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG-TSNGNLTGQARAMNSVD 153 (311)
T ss_dssp EEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC-CBCBCCCCCSSCEEEEE
T ss_pred ccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 999999999999988754 35688899999999994 678888875 456999999987 46677889999999999
Q ss_pred EccCCCE-EEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee
Q psy4876 426 WSPDGRY-LASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504 (609)
Q Consensus 426 ~spdg~~-lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~ 504 (609)
|+|++++ |++|+.|+.|++||++++ +....+..|...|.+++|+|++. ++++++ .|+.|++||+.++..+
T Consensus 154 ~~~~~~~~l~sgs~d~~i~i~d~~~~------~~~~~~~~~~~~i~~v~~~p~~~-~l~~~~--~d~~v~~~d~~~~~~~ 224 (311)
T d1nr0a1 154 FKPSRPFRIISGSDDNTVAIFEGPPF------KFKSTFGEHTKFVHSVRYNPDGS-LFASTG--GDGTIVLYNGVDGTKT 224 (311)
T ss_dssp ECSSSSCEEEEEETTSCEEEEETTTB------EEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTCCEE
T ss_pred ccccceeeeccccccccccccccccc------ccccccccccccccccccCcccc-cccccc--cccccccccccccccc
Confidence 9999885 888999999999999987 78888899999999999999885 566653 7999999999999888
Q ss_pred EEEcC--------CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCC-CEEEEEEeCCCCEEEEEECC
Q psy4876 505 DSIDT--------KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSA-RVLNLAMSPDETTVLSAGAD 575 (609)
Q Consensus 505 ~~~~~--------~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~-~V~~l~~spdg~~L~s~s~D 575 (609)
..+.. ...|.+++|+|++++|++ |+.||.|+|||+.+++++..+..|.. ....+.+.+++..|++++.|
T Consensus 225 ~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t--gs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~d 302 (311)
T d1nr0a1 225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS--ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 302 (311)
T ss_dssp EECBCTTSSSCSSSSCEEEEEECTTSSEEEE--EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT
T ss_pred ccccccccccccccccccccccCCCCCEEEE--EeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECC
Confidence 77652 347999999999999998 44899999999999999999987653 22333444456689999999
Q ss_pred CCEEEEEcC
Q psy4876 576 ETLRLWKIF 584 (609)
Q Consensus 576 g~I~iWdl~ 584 (609)
|.|++||.+
T Consensus 303 G~i~~wd~d 311 (311)
T d1nr0a1 303 GFINFVNPE 311 (311)
T ss_dssp CCEEEEETT
T ss_pred CEEEEEeCC
Confidence 999999974
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.1e-35 Score=306.18 Aligned_cols=300 Identities=19% Similarity=0.294 Sum_probs=225.8
Q ss_pred eeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 270 YYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 270 ~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
-.|++|+|+|+| +||.|.|+.|+|||+.++... ..+......... ...........|...|++++|+|+|+
T Consensus 63 ~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~V~~l~~s~~~~ 134 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLV---ARLSDDSAANKD-----PENLNTSSSPSSDLYIRSVCFSPDGK 134 (388)
T ss_dssp SCCCEEEECTTSSEEEEECBSCEEEEETTTCCEE---EEECC----------------------CCCCBEEEEEECTTSS
T ss_pred CcEEEEEECCCCCEEEEEeCCeEEEEEecccceE---eeeccccccccc-----ccccccccccCCCCCEEEEEECCCCC
Confidence 458999999997 777778999999999873211 111111000000 00011111112788899999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEE
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKW 426 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 426 (609)
+|++|+.||.|++||...++.+..+.+|...|.++.| ++..+++++.+|.|++||..+. ........+.. ..++.+
T Consensus 135 ~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~-~~~~~~ 212 (388)
T d1erja_ 135 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG-QCSLTLSIEDG-VTTVAV 212 (388)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECSSC-EEEEEE
T ss_pred cceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccc-ccccccccccc-cccccc
Confidence 9999999999999999999999999999999999999 4689999999999999999986 34555554554 445555
Q ss_pred c-cCCCEEEEEeCCCcEEEEeCCCCCCCCCc-cceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee
Q psy4876 427 S-PDGRYLASGGNDNLLNIWSGVPGQHTFST-QPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504 (609)
Q Consensus 427 s-pdg~~lasgs~Dg~I~iwd~~~~~~~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~ 504 (609)
+ +++.+|++|+.||.|++||..++...... .......+|...|.+++|+|++. +|++|+ .|+.|++||+.++...
T Consensus 213 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~--~d~~i~iwd~~~~~~~ 289 (388)
T d1erja_ 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGS--LDRSVKLWNLQNANNK 289 (388)
T ss_dssp CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEEC------
T ss_pred cCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC-EEEEEE--CCCcEEEEeccCCccc
Confidence 5 48999999999999999999987321110 11223356889999999999885 556653 8999999999866432
Q ss_pred E------------EE-cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEE------eCC
Q psy4876 505 D------------SI-DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAM------SPD 565 (609)
Q Consensus 505 ~------------~~-~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~------spd 565 (609)
. .. .+...|.+++|++++++|++ |+.||.|+|||+.+++++..+.+|.+.|+++++ +|+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--g~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd 367 (388)
T d1erja_ 290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS--GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367 (388)
T ss_dssp ---------CEEEEEECCSSCEEEEEECGGGCEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTT
T ss_pred cccccccccceeeecccccceEEEEEECCCCCEEEE--EeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCC
Confidence 2 22 23458999999999999998 458999999999999999999999999999975 678
Q ss_pred CCEEEEEECCCCEEEEEcC
Q psy4876 566 ETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 566 g~~L~s~s~Dg~I~iWdl~ 584 (609)
+.+|+||+.||+|+||+++
T Consensus 368 ~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 368 YNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp CEEEEEEETTSEEEEEEEE
T ss_pred CCEEEEEeCCCEEEEEeee
Confidence 9999999999999999985
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.4e-33 Score=286.22 Aligned_cols=275 Identities=17% Similarity=0.350 Sum_probs=241.3
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|++|+|+|++ +++++.||.|+|||+.+ +.. +..+. |...|.+++|+|
T Consensus 55 ~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~-------------------------~~~--~~~~~~~~~~v~~v~~~~ 107 (340)
T d1tbga_ 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT-------------------------TNK--VHAIPLRSSWVMTCAYAP 107 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTT-------------------------TEE--EEEEECSCSCEEEEEECT
T ss_pred CCCEEEEEECCCCCEEEEEECCCceeeeeccc-------------------------cee--EEEEecccccEEeeEeec
Confidence 4469999999986 66788999999999987 543 34455 889999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----eeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCC
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAK----KKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQE 420 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~ 420 (609)
++.+|++|+.|+.|.+|+.... .....+.+|........+ .+..+..+..++....++.... ........+...
T Consensus 108 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 186 (340)
T d1tbga_ 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG-QQTTTFTGHTGD 186 (340)
T ss_dssp TSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTT-EEEEEEECCSSC
T ss_pred cceeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccc-ccccccccccee
Confidence 9999999999999999998654 456677888888777766 5788888999999999998876 456666778889
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
+....+.+.+.++++|+.|+.|++||++++ .++..+.+|...|.+++|+|++. ++++|+ .|+.|++||+..
T Consensus 187 ~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~------~~~~~~~~h~~~i~~v~~~p~~~-~l~s~s--~d~~i~~~~~~~ 257 (340)
T d1tbga_ 187 VMSLSLAPDTRLFVSGACDASAKLWDVREG------MCRQTFTGHESDINAICFFPNGN-AFATGS--DDATCRLFDLRA 257 (340)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTT------EEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTT
T ss_pred EeeeccccccceeEEeecCceEEEEECCCC------cEEEEEeCCCCCeEEEEECCCCC-EEEEEe--CCCeEEEEeecc
Confidence 999999999999999999999999999988 78889999999999999999885 666664 899999999999
Q ss_pred CceeEEEcC---CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCC
Q psy4876 501 GACLDSIDT---KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADET 577 (609)
Q Consensus 501 ~~~~~~~~~---~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~ 577 (609)
...+..+.. ...+.+++|++++++|++ |+.||.|+|||+.+++.+..+.+|.+.|++++|+|++.+|+||+.||+
T Consensus 258 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~ 335 (340)
T d1tbga_ 258 DQELMTYSHDNIICGITSVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp TEEEEEECCTTCCSCEEEEEECSSSCEEEE--EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred cccccccccccccCceEEEEECCCCCEEEE--EECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCE
Confidence 988877743 347999999999999998 558999999999999999999999999999999999999999999999
Q ss_pred EEEEE
Q psy4876 578 LRLWK 582 (609)
Q Consensus 578 I~iWd 582 (609)
|+|||
T Consensus 336 v~iWd 340 (340)
T d1tbga_ 336 LKIWN 340 (340)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6e-34 Score=297.12 Aligned_cols=283 Identities=12% Similarity=0.196 Sum_probs=228.6
Q ss_pred EEEEEecCCC-eE-EEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHFN-VL-AVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~~-ll-a~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~ 348 (609)
|.|++|+|++ ++ +++.|+.|+|||..+ ++...+..+. |.+.|.+|+|+|+++
T Consensus 10 It~~~~s~dg~~la~~~~~~~i~iw~~~~-------------------------~~~~~~~~l~gH~~~V~~l~fsp~~~ 64 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSG-------------------------NKWVQVHELKEHNGQVTGVDWAPDSN 64 (371)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEET-------------------------TEEEEEEEEECCSSCEEEEEEETTTT
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEECCC-------------------------CCEEEEEEecCCCCCEEEEEECCCCC
Confidence 7899999997 44 567789999999987 6777777777 999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCee--EEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe---eEEEEccCCCCe
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKK--CRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDH---KVALLQNHTQEV 421 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~---~~~~~~~h~~~V 421 (609)
+|++|+.|+.|+|||+.++.. ...+.+|...|.+++| +++.|++|+.|+.|++|++..... .......|...|
T Consensus 65 ~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v 144 (371)
T d1k8kc_ 65 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV 144 (371)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred EEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccc
Confidence 999999999999999987754 4455778999999999 578999999999999999876542 234456789999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCC------------CccceEeecCCcccEEEEEEcCCCCcEEEEEeccC
Q psy4876 422 CGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTF------------STQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA 489 (609)
Q Consensus 422 ~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~------------~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~ 489 (609)
.+++|+|++++|++|+.|+.|++||+....... ....+.....|...|.+++|+|++. ++++++ .
T Consensus 145 ~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~--~ 221 (371)
T d1k8kc_ 145 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVS--H 221 (371)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEE--T
T ss_pred ccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccc-cccccc--c
Confidence 999999999999999999999999987543211 1234566778999999999999985 566664 7
Q ss_pred CCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE-------------------
Q psy4876 490 DRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE------------------- 549 (609)
Q Consensus 490 Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~------------------- 549 (609)
|+.|++||+.++..+..+..+ .+|.+++|+++++++++ | .|+.+++|..........
T Consensus 222 d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~--g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (371)
T d1k8kc_ 222 DSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA--G-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTAR 298 (371)
T ss_dssp TTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE--E-TTSSCEEEEEETTTTEEEECCCCCCC--------CHH
T ss_pred CCcceEEeeecccceeeeecccccceeeeecCCCCEEEE--E-cCCceEEEEeeCCCceEEEeeeecCccccccccccce
Confidence 999999999999999988766 48999999999988775 5 467666655322110000
Q ss_pred ----------------------EeCCCCCEEEEEEeCCC----CEEEEEECCCCEEEEEcCC
Q psy4876 550 ----------------------LHGHSARVLNLAMSPDE----TTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 550 ----------------------l~~h~~~V~~l~~spdg----~~L~s~s~Dg~I~iWdl~~ 585 (609)
...|.+.|+++++.+.+ ..|+|+|.||.|+|||+.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 299 ERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp HHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred eeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 01388899999998754 3689999999999999855
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-32 Score=278.03 Aligned_cols=255 Identities=20% Similarity=0.260 Sum_probs=223.0
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe-----eEEEecCCCCceEEEEe--cCCEEEEEecC
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK-----KCRTMDGHDVRVGALAW--NTYILSSGSRC 396 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~-----~~~~l~~h~~~V~~l~~--~~~~L~sgs~d 396 (609)
...+.+..+.|...|++|+|+|+|++||+|+ ||.|+|||+.++. ......+|...|.+++| ++.+|++|+.|
T Consensus 40 ~~~~~~~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d 118 (337)
T d1gxra_ 40 RHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA 118 (337)
T ss_dssp SEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred CCceEEEECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc
Confidence 3456677778999999999999999999987 7999999997653 22344579999999999 67899999999
Q ss_pred CeEEEEEcCCCC-eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEc
Q psy4876 397 GNIVHHDVRSRD-HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWC 475 (609)
Q Consensus 397 g~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 475 (609)
|.|++||+.... .....+..|...|.+++|+|++.++++++.|+.|++||+.++ +.......|...|.+++|+
T Consensus 119 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~------~~~~~~~~~~~~v~~l~~s 192 (337)
T d1gxra_ 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ------TLVRQFQGHTDGASCIDIS 192 (337)
T ss_dssp SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEEC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc------ccccccccccccccccccc
Confidence 999999987543 345667889999999999999999999999999999999987 6778888899999999999
Q ss_pred CCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCC
Q psy4876 476 PWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSA 555 (609)
Q Consensus 476 p~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~ 555 (609)
+++. .+++++ .|+.|++||+++++.+..+.....|.+++|+|+++.+++ |..++.|++||+...... ....|..
T Consensus 193 ~~~~-~~~~~~--~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~-~~~~~~~ 266 (337)
T d1gxra_ 193 NDGT-KLWTGG--LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV--GMESSNVEVLHVNKPDKY-QLHLHES 266 (337)
T ss_dssp TTSS-EEEEEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEE--EETTSCEEEEETTSSCEE-EECCCSS
T ss_pred cccc-cccccc--ccccccccccccceeecccccccceEEEEEcccccccce--eccccccccccccccccc-ccccccc
Confidence 9885 455553 799999999999999999999999999999999999998 448999999999988765 4567999
Q ss_pred CEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 556 RVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 556 ~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
.|++++|+|+|++|++++.||.|++||+.++.....
T Consensus 267 ~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~ 302 (337)
T d1gxra_ 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 999999999999999999999999999998876544
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.1e-32 Score=277.75 Aligned_cols=246 Identities=17% Similarity=0.249 Sum_probs=218.7
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCee-
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHK- 410 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~- 410 (609)
+.+.+..++++|+|+.||.+. ++.|.+||+.+......+.+|...|.+++| ++++|++|+.||.|++||+......
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~ 94 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc
Confidence 456777899999999999886 467999999999999999999999999999 6899999999999999999887543
Q ss_pred EEEEccCCCCeEEEEEccCCCEEEEEeC--CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEecc
Q psy4876 411 VALLQNHTQEVCGLKWSPDGRYLASGGN--DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGT 488 (609)
Q Consensus 411 ~~~~~~h~~~V~~l~~spdg~~lasgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs 488 (609)
...+..|...|.+++|+|++++|++++. +..++||+++++ +....+.+|...|.+++|+|++..++++|+
T Consensus 95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~------~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs-- 166 (311)
T d1nr0a1 95 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG------TSNGNLTGQARAMNSVDFKPSRPFRIISGS-- 166 (311)
T ss_dssp EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC------CBCBCCCCCSSCEEEEEECSSSSCEEEEEE--
T ss_pred ccccccccCccccccccccccccccccccccccccccccccc------cccccccccccccccccccccceeeecccc--
Confidence 3557889999999999999999999986 456999999988 677788899999999999999988888874
Q ss_pred CCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe-------CCCCCEEEE
Q psy4876 489 ADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH-------GHSARVLNL 560 (609)
Q Consensus 489 ~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~-------~h~~~V~~l 560 (609)
.|+.|++||++++++...+..+ ..|.++.|+|++++++++ +.|+.|++||..++..+..+. +|.+.|+++
T Consensus 167 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~--~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~ 244 (311)
T d1nr0a1 167 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST--GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL 244 (311)
T ss_dssp TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE--ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred cccccccccccccccccccccccccccccccCccccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999888765 589999999999999984 489999999999988877663 588899999
Q ss_pred EEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 561 AMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 561 ~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
+|+|++++|++|+.||+|+|||+.++...+
T Consensus 245 ~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~ 274 (311)
T d1nr0a1 245 TWSPDGTKIASASADKTIKIWNVATLKVEK 274 (311)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred ccCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 999999999999999999999998877554
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.6e-30 Score=259.43 Aligned_cols=249 Identities=20% Similarity=0.341 Sum_probs=224.4
Q ss_pred eeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCC
Q psy4876 330 MDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRS 406 (609)
Q Consensus 330 ~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~ 406 (609)
..+. |.+.|++|+|+|++++||+|+.||.|+|||+.+++.+.++.+|...|.+++| ++.++++++.++.+.+|+...
T Consensus 11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 90 (317)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccc
Confidence 3455 9999999999999999999999999999999999999999999999999999 578999999999999999987
Q ss_pred CCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 407 RDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 407 ~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
. .....+..|...+.++.|++++..+++++.|+.+++||++++ ..+..+..|...+.+++|++++. ++++++
T Consensus 91 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~ 162 (317)
T d1vyhc1 91 F-ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG------YCVKTFTGHREWVRMVRPNQDGT-LIASCS 162 (317)
T ss_dssp S-CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECTTSS-EEEEEE
T ss_pred c-ccccccccccccceeeeccCCCceEEeeccCcceeEeecccc------eeeeEEccCCCcceeeecccCCC-EEEEEe
Confidence 6 466677889999999999999999999999999999999988 67888899999999999999885 666664
Q ss_pred ccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCC--------------------eEEEEEecCCCeEEEEECCCCc
Q psy4876 487 GTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYK--------------------ELVSAHGFAQNQLIIWKYPSLV 545 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~--------------------~l~~~sG~~dg~I~Iwd~~~~~ 545 (609)
.|+.|++|++.+++.+..+..+ ..+..+.|++++. .+++ |+.|+.|++||..+++
T Consensus 163 --~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~i~~~~~~~~~ 238 (317)
T d1vyhc1 163 --NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS--GSRDKTIKMWDVSTGM 238 (317)
T ss_dssp --TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE--EETTSEEEEEETTTTE
T ss_pred --CCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEe--ccCCCEEEEEECCCCc
Confidence 8999999999999999888755 4788888887643 4455 5589999999999999
Q ss_pred eEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 546 KVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 546 ~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
.+..+.+|...|.+++|+|++++|++|+.||.|+|||+.+++...
T Consensus 239 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 283 (317)
T d1vyhc1 239 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 283 (317)
T ss_dssp EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE
T ss_pred EEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 999999999999999999999999999999999999998876554
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.8e-30 Score=267.34 Aligned_cols=275 Identities=23% Similarity=0.385 Sum_probs=224.0
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQL 361 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~i 361 (609)
.+....++.+.+|+...... ........++|.+.|+||+|+|+|++||+|+ |+.|+|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~----------------------~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~i 87 (388)
T d1erja_ 31 ALKKQTNDYYILYNPALPRE----------------------IDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQV 87 (388)
T ss_dssp TSEEECSSCEEEECTTSCCC----------------------EEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEE
T ss_pred ccccCCCCcEEEeCCCCCcc----------------------eeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEE
Confidence 45577788888999765210 1122233445999999999999999999986 899999
Q ss_pred EeCCCCeeEEEec------------------CCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCe
Q psy4876 362 WDVSAKKKCRTMD------------------GHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEV 421 (609)
Q Consensus 362 wd~~~~~~~~~l~------------------~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 421 (609)
||+.+++.+..+. .|...|.+++| ++.+|++|+.||.|++||...+ ..+....+|...|
T Consensus 88 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~-~~~~~~~~h~~~v 166 (388)
T d1erja_ 88 YRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR-KIVMILQGHEQDI 166 (388)
T ss_dssp EETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCE
T ss_pred EEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccc-ccccccccccccc
Confidence 9999988877664 35677999999 5789999999999999999987 5778889999999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 422 CGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 422 ~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
.+++|++++..+++|+.++.|++||..+. ........ .....++.+++....++++|+ .|+.|++||+.++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--~d~~i~i~~~~~~ 237 (388)
T d1erja_ 167 YSLDYFPSGDKLVSGSGDRTVRIWDLRTG------QCSLTLSI-EDGVTTVAVSPGDGKYIAAGS--LDRAVRVWDSETG 237 (388)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTT------EEEEEEEC-SSCEEEEEECSTTCCEEEEEE--TTSCEEEEETTTC
T ss_pred cccccccccccccccccceeeeeeecccc------cccccccc-ccccccccccCCCCCeEEEEc--CCCeEEEeecccC
Confidence 99999999999999999999999999876 45555544 445566777776667888874 8999999999999
Q ss_pred ceeEEEc--------CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc------------eEEEEeCCCCCEEEEE
Q psy4876 502 ACLDSID--------TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV------------KVAELHGHSARVLNLA 561 (609)
Q Consensus 502 ~~~~~~~--------~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~------------~~~~l~~h~~~V~~l~ 561 (609)
..+..+. +...|.+++|+|++++|++ |+.|+.|++||+.++. .......|...|.+++
T Consensus 238 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 315 (388)
T d1erja_ 238 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS--GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 315 (388)
T ss_dssp CEEEEEC------CCCSSCEEEEEECTTSSEEEE--EETTSEEEEEEC---------------CEEEEEECCSSCEEEEE
T ss_pred ccceeeccccccccCCCCCEEEEEECCCCCEEEE--EECCCcEEEEeccCCccccccccccccceeeecccccceEEEEE
Confidence 8887764 2357999999999999998 4489999999986543 3445567899999999
Q ss_pred EeCCCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 562 MSPDETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 562 ~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
|+|+|++|++|+.||.|++||+.+++....
T Consensus 316 ~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 345 (388)
T d1erja_ 316 TTQNDEYILSGSKDRGVLFWDKKSGNPLLM 345 (388)
T ss_dssp ECGGGCEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCcEEEE
Confidence 999999999999999999999998876543
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-30 Score=267.37 Aligned_cols=279 Identities=15% Similarity=0.235 Sum_probs=214.0
Q ss_pred EEEEEecCCC-eEEEEcCCeEEE--EeCCCCCCCceEEecCCccccccccccccccceeeeeeec-C-CCCeEEEEEcc-
Q psy4876 272 LNLIDWSHFN-VLAVALGGSIYL--WNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-G-NENVCSVAWIQ- 345 (609)
Q Consensus 272 v~~l~wsp~~-lla~s~dg~I~i--Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h-~~~V~~v~~sp- 345 (609)
+.+|+|+|++ .++.+.+..+.| |+... .....+.++. | ...|++++|+|
T Consensus 20 ~t~l~~~~~~~~la~~~~~~~~i~~~~~~~-------------------------~~~~~~~~~~gh~~~~v~~v~fsP~ 74 (325)
T d1pgua1 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGD-------------------------SKVPPVVQFTGHGSSVVTTVKFSPI 74 (325)
T ss_dssp CCCCEEETTTTEEEEEETTEEEEEECCSSC-------------------------CSSCSEEEECTTTTSCEEEEEECSS
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEeCCC-------------------------CCccceEEEeCCCCCCEEEEEEeeC
Confidence 4578999986 666666665544 55443 3333444544 4 57899999998
Q ss_pred -CCCEEEEEeCCCeEEEEeCCCCee--------EEEecCCCCceEEEEe--cCCEEEEEec--CCeEEEEEcCCCCeeEE
Q psy4876 346 -EGYMLGVGTSLGTVQLWDVSAKKK--------CRTMDGHDVRVGALAW--NTYILSSGSR--CGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 346 -dg~~Lasgs~dg~I~iwd~~~~~~--------~~~l~~h~~~V~~l~~--~~~~L~sgs~--dg~I~iwd~~~~~~~~~ 412 (609)
+|.+||+|+.||+|+|||+..++. ...+..|...|.+++| ++..|++++. ++.+.+|+.+++ ..+.
T Consensus 75 ~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~ 153 (325)
T d1pgua1 75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG-NSLG 153 (325)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC-CEEE
T ss_pred CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc-ccce
Confidence 568999999999999999865432 2345678899999999 5677776654 678999999886 4788
Q ss_pred EEccCCCCeEEEEEccCCCE-EEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 413 LLQNHTQEVCGLKWSPDGRY-LASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~-lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
.+.+|...|.+++|+|++.+ +++++.|+.|++||....+.. ........|...|.+++|+|++..++++++ .|+
T Consensus 154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~---~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~--~d~ 228 (325)
T d1pgua1 154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS---ASDRTHHKQGSFVRDVEFSPDSGEFVITVG--SDR 228 (325)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE---EEECSSSCTTCCEEEEEECSTTCCEEEEEE--TTC
T ss_pred eeeecccccccccccccccceEEEeecccccccccccccccc---eecccccCCCCccEEeeeccccceeccccc--ccc
Confidence 88999999999999998875 778999999999998876211 222334567888999999998778888875 899
Q ss_pred eEEEEECCCCceeEEEcCCC-CeEEEEEc---CCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCC--EEEEEEeCC
Q psy4876 492 HIYFWNVSSGACLDSIDTKS-QVCALLWN---SDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSAR--VLNLAMSPD 565 (609)
Q Consensus 492 ~I~iwd~~t~~~~~~~~~~~-~v~sl~~s---~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~--V~~l~~spd 565 (609)
.|++||+++++++..+..+. .+..+.|+ +++++|+++ +.|+.|+|||+.+++.+..+..|... +..+++.+.
T Consensus 229 ~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~--s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (325)
T d1pgua1 229 KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATV--GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT 306 (325)
T ss_dssp CEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEE--ETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE
T ss_pred ceeeeeeccccccccccccccccccceeeeeccCCCEEEEE--eCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEEC
Confidence 99999999999999987553 44444444 678899884 48999999999999999888766543 334444332
Q ss_pred -CCEEEEEECCCCEEEEEc
Q psy4876 566 -ETTVLSAGADETLRLWKI 583 (609)
Q Consensus 566 -g~~L~s~s~Dg~I~iWdl 583 (609)
+.+|++++.||+|+|||+
T Consensus 307 ~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 307 GNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ETTEEEEEETTSCEEEEET
T ss_pred CCCEEEEEECCCEEEEEEC
Confidence 347899999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.1e-31 Score=273.62 Aligned_cols=244 Identities=14% Similarity=0.211 Sum_probs=203.7
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe--eEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCC-
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK--KCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRD- 408 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~- 408 (609)
..++|+|++|+|+|++||+|+.||.|+|||+.+++ .+..+.+|...|.+++| ++++|++|+.|++|++||+....
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence 45789999999999999999999999999998775 67788999999999999 57999999999999999998764
Q ss_pred eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEecc
Q psy4876 409 HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGT 488 (609)
Q Consensus 409 ~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs 488 (609)
.....+.+|...|.+++|+|++++|++|+.|+.|++|++...... .........|...|.+++|+|++. +|++|+
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~--~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s-- 160 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW--WVCKHIKKPIRSTVLSLDWHPNSV-LLAAGS-- 160 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE--EEEEEECTTCCSCEEEEEECTTSS-EEEEEE--
T ss_pred ccccccccccccccccccccccccceeecccCcceeeeeeccccc--cccccccccccccccccccccccc-ceeccc--
Confidence 234456788999999999999999999999999999998766321 122344567889999999999885 566664
Q ss_pred CCCeEEEEECCCCc------------------eeEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE
Q psy4876 489 ADRHIYFWNVSSGA------------------CLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE 549 (609)
Q Consensus 489 ~Dg~I~iwd~~t~~------------------~~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~ 549 (609)
.|+.|++||+.... .+..... ...|.+++|+|+++.|+++ +.|+.|++||+.++..+..
T Consensus 161 ~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~--~~d~~i~iwd~~~~~~~~~ 238 (371)
T d1k8kc_ 161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV--SHDSTVCLADADKKMAVAT 238 (371)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE--ETTTEEEEEEGGGTTEEEE
T ss_pred cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccc--ccCCcceEEeeecccceee
Confidence 89999999986532 2333333 3479999999999999884 4899999999999999999
Q ss_pred EeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 550 LHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 550 l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
+..|..+|.+++|+||+++|++ +.|+.+++|....
T Consensus 239 ~~~~~~~v~s~~fs~d~~~la~-g~d~~~~~~~~~~ 273 (371)
T d1k8kc_ 239 LASETLPLLAVTFITESSLVAA-GHDCFPVLFTYDS 273 (371)
T ss_dssp EECSSCCEEEEEEEETTEEEEE-ETTSSCEEEEEET
T ss_pred eecccccceeeeecCCCCEEEE-EcCCceEEEEeeC
Confidence 9999999999999999987765 5588888876654
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=3.3e-30 Score=258.60 Aligned_cols=272 Identities=15% Similarity=0.208 Sum_probs=206.1
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccC
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQE 346 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spd 346 (609)
...|++|+|+|++ +++++.||.|++||+.+ +.......-.|...|++++|+|+
T Consensus 12 ~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~-------------------------~~~~~~~~~~h~~~v~~v~~~~~ 66 (299)
T d1nr0a2 12 NKAITALSSSADGKTLFSADAEGHINSWDIST-------------------------GISNRVFPDVHATMITGIKTTSK 66 (299)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------------------------CCEEECSSCSCSSCEEEEEECTT
T ss_pred CCCcEEEEECCCCCEEEEEcCCCeEEEEECCC-------------------------CcEEEEEcCCCCCcEEEEEeecc
Confidence 3469999999986 66789999999999988 55443332238899999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCee---EEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCe
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKK---CRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEV 421 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~---~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 421 (609)
|.++ +++.|+.|++|+...... ......+...+.+++| ++.+++++ .++.+.+|+... ..... ....+
T Consensus 67 g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~~---~~~~~--~~~~~ 139 (299)
T d1nr0a2 67 GDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHGK---LTEVP--ISYNS 139 (299)
T ss_dssp SCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETTE---EEEEE--CSSCE
T ss_pred ceee-cccceeeEEEeccCCcccccccccccccccccccccccccccccccc-cccccccccccc---ccccc--ccccc
Confidence 9765 566789999999865321 2223356778889999 45655554 567899998542 23332 34568
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccce-EeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 422 CGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPI-HSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 422 ~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~-~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
.+++|+|++++|++|+.|+.|++||++++ ... .....|...|.+++|+|++. ++++++ .|+.|++||+.+
T Consensus 140 ~~~~~s~~~~~l~~g~~dg~i~~~d~~~~------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~d~~i~~~~~~~ 210 (299)
T d1nr0a2 140 SCVALSNDKQFVAVGGQDSKVHVYKLSGA------SVSEVKTIVHPAEITSVAFSNNGA-FLVATD--QSRKVIPYSVAN 210 (299)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEEEETT------EEEEEEEEECSSCEEEEEECTTSS-EEEEEE--TTSCEEEEEGGG
T ss_pred ccccccccccccccccccccccccccccc------cccccccccccccccccccccccc-cccccc--cccccccccccc
Confidence 89999999999999999999999999876 222 23456889999999999885 455553 799999999988
Q ss_pred CceeEEE---cC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE--EEeCCC-CCEEEEEEeCCCCEEEEEE
Q psy4876 501 GACLDSI---DT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVA--ELHGHS-ARVLNLAMSPDETTVLSAG 573 (609)
Q Consensus 501 ~~~~~~~---~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~--~l~~h~-~~V~~l~~spdg~~L~s~s 573 (609)
+..+... .. ...|.+++|+|++++|++ |+.||.|+|||+.++.... ....|. ..|.++.| +++.+|++++
T Consensus 211 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s--gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s 287 (299)
T d1nr0a2 211 NFELAHTNSWTFHTAKVACVSWSPDNVRLAT--GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAG 287 (299)
T ss_dssp TTEESCCCCCCCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEE
T ss_pred cccccccccccccccccccccccccccceEE--EcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEe
Confidence 7765433 22 358999999999999998 4489999999998765433 223344 45666654 5678999999
Q ss_pred CCCCEEEEEcC
Q psy4876 574 ADETLRLWKIF 584 (609)
Q Consensus 574 ~Dg~I~iWdl~ 584 (609)
.|++|+|||+.
T Consensus 288 ~D~~i~iWdl~ 298 (299)
T d1nr0a2 288 QDSNIKFWNVP 298 (299)
T ss_dssp TTSCEEEEECC
T ss_pred CCCEEEEEecc
Confidence 99999999984
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.6e-29 Score=255.04 Aligned_cols=269 Identities=20% Similarity=0.264 Sum_probs=204.8
Q ss_pred eEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCE
Q psy4876 271 YLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYM 349 (609)
Q Consensus 271 ~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~ 349 (609)
.+.|++++.+-+++++.|+.|+|||+.+ ++ .+.++. |.+.|++++|+++ .+
T Consensus 15 vitc~~~~~~~l~tgs~Dg~i~vWd~~~-------------------------~~--~~~~l~~H~~~V~~l~~s~~-~~ 66 (355)
T d1nexb2 15 VITCLQFEDNYVITGADDKMIRVYDSIN-------------------------KK--FLLQLSGHDGGVWALKYAHG-GI 66 (355)
T ss_dssp CEEEEEEETTEEEEEETTTEEEEEETTT-------------------------TE--EEEEEECCSSCEEEEEEETT-TE
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEECCC-------------------------Cc--EEEEEECCCCCEEEEEEcCC-CE
Confidence 3678888766688899999999999987 44 445556 8899999999885 58
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEecCCCC---------------------------------------------------
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCRTMDGHDV--------------------------------------------------- 378 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~~l~~h~~--------------------------------------------------- 378 (609)
|++|+.||.|++|+....+.......+..
T Consensus 67 l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 146 (355)
T d1nexb2 67 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 146 (355)
T ss_dssp EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESC
T ss_pred EEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceec
Confidence 88999999999999887665444332222
Q ss_pred ----------------ceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcE
Q psy4876 379 ----------------RVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLL 442 (609)
Q Consensus 379 ----------------~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I 442 (609)
.+.....++.+++++..|+.|++||+.+. ..+....++...+.++.|++++.++++++.|+.|
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 225 (355)
T d1nexb2 147 PEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 225 (355)
T ss_dssp TTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred cccccceeeeeeeccccccccccccceeeeecccceeeeeecccc-cceeeeeccccccccccccccceeeecccccceE
Confidence 22222223445555555555555555544 3455566778889999999999999999999999
Q ss_pred EEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCC
Q psy4876 443 NIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDY 522 (609)
Q Consensus 443 ~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g 522 (609)
++||+.++ ..+..+.+|...|.+++|++ .++++|+ .||.|++||+.++................+++++
T Consensus 226 ~i~d~~~~------~~~~~~~~h~~~v~~~~~~~---~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (355)
T d1nexb2 226 RIWDLENG------ELMYTLQGHTALVGLLRLSD---KFLVSAA--ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSD 294 (355)
T ss_dssp EEEETTTC------CEEEEECCCSSCCCEEEECS---SEEEEEC--TTSEEEEEETTTCCEEEEEECTTCCCCCEEEECS
T ss_pred Eeeecccc------cccccccccccccccccccc---ceeeeee--cccccccccccccceecccccCCceEEEEEcCCC
Confidence 99999988 78889999999999999975 4677764 8999999999988776655444444444567777
Q ss_pred CeEEEEEecCCCeEEEEECCCCceEE-EEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEc
Q psy4876 523 KELVSAHGFAQNQLIIWKYPSLVKVA-ELHGHSARVLNLAMSPDETTVLSAGADETLRLWKI 583 (609)
Q Consensus 523 ~~l~~~sG~~dg~I~Iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl 583 (609)
.++++ | .|+.|+|||+++++.+. .+.+|.+.|++++|+|+ .+|++++.||.++||.+
T Consensus 295 ~~l~~--g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 295 NILVS--G-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp SEEEE--E-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred CEEEE--E-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 76665 3 48999999999999875 45789999999999987 47888999999776643
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.7e-28 Score=247.59 Aligned_cols=280 Identities=20% Similarity=0.341 Sum_probs=217.6
Q ss_pred CccccccCCccCCceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-C
Q psy4876 256 TADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-G 334 (609)
Q Consensus 256 ~p~~il~ap~~~~~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h 334 (609)
.+.++|..+. +..+.+++|+.+-+++++.||.|+|||+.+ ++ .+.++. |
T Consensus 7 ~~~~~l~GH~---~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~-------------------------~~--~~~~~~~h 56 (342)
T d2ovrb2 7 KSPKVLKGHD---DHVITCLQFCGNRIVSGSDDNTLKVWSAVT-------------------------GK--CLRTLVGH 56 (342)
T ss_dssp CCCEEEECST---TSCEEEEEEETTEEEEEETTSCEEEEETTT-------------------------CC--EEEECCCC
T ss_pred CcCEEECCcC---CceEEEEEECCCEEEEEeCCCeEEEEECCC-------------------------CC--EEEEEeCC
Confidence 3445665432 233567888766688899999999999987 54 344566 8
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEE-------------------------------
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGAL------------------------------- 383 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l------------------------------- 383 (609)
...|.+++|+++ +|++|+.|+.+++|+............+...+...
T Consensus 57 ~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 134 (342)
T d2ovrb2 57 TGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLM 134 (342)
T ss_dssp SSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEE
T ss_pred CCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeee
Confidence 999999999874 99999999999999988765544433332222221
Q ss_pred ---------EecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCC
Q psy4876 384 ---------AWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTF 454 (609)
Q Consensus 384 ---------~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~ 454 (609)
......+++++.|+.|++||.... ..+..+.+|...+..+. +++.+|++|+.||.|++||++.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~~---- 207 (342)
T d2ovrb2 135 GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVETG---- 207 (342)
T ss_dssp CCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT-EEEEEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTTC----
T ss_pred cccccceeeccccceeeeecCCCeEEEeecccc-eeeEEEcCccccccccc--CCCCEEEEEeCCCeEEEeecccc----
Confidence 113456777888888888888775 46777888877766554 57889999999999999999988
Q ss_pred CccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC----CCeEEEEEcCCCCeEEEEEe
Q psy4876 455 STQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK----SQVCALLWNSDYKELVSAHG 530 (609)
Q Consensus 455 ~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~----~~v~sl~~s~~g~~l~~~sG 530 (609)
+.+..+..|...+.++++++ .++++|+ .|+.|++||+...+....+..+ ..+.++.++ +.++++ |
T Consensus 208 --~~~~~~~~~~~~v~~~~~~~---~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s--~ 276 (342)
T d2ovrb2 208 --NCIHTLTGHQSLTSGMELKD---NILVSGN--ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVIT--S 276 (342)
T ss_dssp --CEEEEECCCCSCEEEEEEET---TEEEEEE--TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEE--E
T ss_pred --eeeeEecccccceeEEecCC---CEEEEEc--CCCEEEEEecccccccccccccceeeeceeecccC--CCeeEE--E
Confidence 78888999999999998876 3677764 8999999999999888877643 355555554 567777 4
Q ss_pred cCCCeEEEEECCCCceEEEEe-----CCCCCEEEEEEeCCCCEEEEEECCCC----EEEEEcCC
Q psy4876 531 FAQNQLIIWKYPSLVKVAELH-----GHSARVLNLAMSPDETTVLSAGADET----LRLWKIFE 585 (609)
Q Consensus 531 ~~dg~I~Iwd~~~~~~~~~l~-----~h~~~V~~l~~spdg~~L~s~s~Dg~----I~iWdl~~ 585 (609)
+.||.|+|||+.+++.+..+. +|.+.|++++|+|++.+|++|+.||+ |++||+..
T Consensus 277 s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp ETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred cCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 489999999999999988874 57788999999999999999999996 99999864
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.4e-28 Score=237.73 Aligned_cols=266 Identities=21% Similarity=0.402 Sum_probs=219.8
Q ss_pred eeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCC
Q psy4876 270 YYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGY 348 (609)
Q Consensus 270 ~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~ 348 (609)
..|.|++|+.+.+++++.||+|+|||+.+ ++ .+..+. |.+.|++|+| +++
T Consensus 16 ~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~-------------------------~~--~~~~l~~H~~~V~~v~~--~~~ 66 (293)
T d1p22a2 16 KGVYCLQYDDQKIVSGLRDNTIKIWDKNT-------------------------LE--CKRILTGHTGSVLCLQY--DER 66 (293)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSS-------------------------CC--EEEEECCCSSCEEEEEC--CSS
T ss_pred CCEEEEEEcCCEEEEEeCCCeEEEEECCC-------------------------Cc--EEEEEecCCCCEeeeec--ccc
Confidence 34778888655588899999999999987 54 344555 9999999987 578
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCC--eeEEEEccCCCCeEEEEE
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRD--HKVALLQNHTQEVCGLKW 426 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~ 426 (609)
+|++|+.||.|++|++..+........+.............++++..++.+.+|+..... .....+..|...|..+.+
T Consensus 67 ~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 146 (293)
T d1p22a2 67 VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF 146 (293)
T ss_dssp EEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE
T ss_pred eeecccccccccccccccccccccccccccccccccccccceeecccccceeEeecccccccccccccccccccccccee
Confidence 999999999999999999988888887777777776678899999999999999998754 234556788888988777
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEE
Q psy4876 427 SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDS 506 (609)
Q Consensus 427 spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~ 506 (609)
.+ ..+++++.|+.|++||++++ +.+..+.++...|..+.+++ ..+++++ .|+.|++||+++...+..
T Consensus 147 ~~--~~~~~~s~d~~i~~~d~~~~------~~~~~~~~~~~~v~~~~~~~---~~l~~~~--~dg~i~i~d~~~~~~~~~ 213 (293)
T d1p22a2 147 DD--KYIVSASGDRTIKVWNTSTC------EFVRTLNGHKRGIACLQYRD---RLVVSGS--SDNTIRLWDIECGACLRV 213 (293)
T ss_dssp ET--TEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEEET---TEEEEEE--TTSCEEEEETTTCCEEEE
T ss_pred cc--cccccccCCCceeeecCCCC------cEEEEEcccccccccccCCC---CeEEEec--CCCEEEEEecccceeeee
Confidence 64 57889999999999999988 77888899999999988865 3566653 899999999999999988
Q ss_pred EcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC---------CCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCC
Q psy4876 507 IDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYP---------SLVKVAELHGHSARVLNLAMSPDETTVLSAGADET 577 (609)
Q Consensus 507 ~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~---------~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~ 577 (609)
+..+.... ..+++++.+|++ |..||.|+|||+. ....+..+.+|.+.|++++| ++.+|+||+.||+
T Consensus 214 ~~~~~~~v-~~~~~~~~~l~s--g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~ 288 (293)
T d1p22a2 214 LEGHEELV-RCIRFDNKRIVS--GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDT 288 (293)
T ss_dssp ECCCSSCE-EEEECCSSEEEE--EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSE
T ss_pred ecccceee-eeccccceEEEE--EcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCE
Confidence 87665432 246677888888 5589999999963 24567888999999999999 5678999999999
Q ss_pred EEEEE
Q psy4876 578 LRLWK 582 (609)
Q Consensus 578 I~iWd 582 (609)
|+|||
T Consensus 289 i~iWD 293 (293)
T d1p22a2 289 ILIWD 293 (293)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=8.4e-28 Score=240.90 Aligned_cols=240 Identities=16% Similarity=0.205 Sum_probs=195.5
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEec-CCCCceEEEEecC-CEEEEEecCCeEEEEEcCCCCe--
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMD-GHDVRVGALAWNT-YILSSGSRCGNIVHHDVRSRDH-- 409 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~~~-~~L~sgs~dg~I~iwd~~~~~~-- 409 (609)
|.+.|++++|+|+|++||+|+.||.|+|||+.+++.+..+. +|...|.+++|++ ..+++++.|+.+++|+......
T Consensus 11 H~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~ 90 (299)
T d1nr0a2 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDS 90 (299)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCT
T ss_pred CCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCccccc
Confidence 99999999999999999999999999999999999888875 6899999999942 3466777899999999865421
Q ss_pred eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC
Q psy4876 410 KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA 489 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~ 489 (609)
.......+...+.+++|+++|+++++++ ++.+.+|+... ..... ....+.+++|+|++. ++++|+ .
T Consensus 91 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--------~~~~~--~~~~~~~~~~s~~~~-~l~~g~--~ 156 (299)
T d1nr0a2 91 SKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--------LTEVP--ISYNSSCVALSNDKQ-FVAVGG--Q 156 (299)
T ss_dssp TSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--------EEEEE--CSSCEEEEEECTTSC-EEEEEE--T
T ss_pred cccccccccccccccccccccccccccc-ccccccccccc--------ccccc--ccccccccccccccc-cccccc--c
Confidence 1223345778899999999999877766 57899999542 22222 334578999999874 666663 8
Q ss_pred CCeEEEEECCCCceeE--EEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE---EEeCCCCCEEEEEEeC
Q psy4876 490 DRHIYFWNVSSGACLD--SIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVA---ELHGHSARVLNLAMSP 564 (609)
Q Consensus 490 Dg~I~iwd~~t~~~~~--~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~---~l~~h~~~V~~l~~sp 564 (609)
|+.|++||+.+++... ...+...|.+++|+|+++++++ ++.++.|++||+.++..+. .+.+|...|++++|+|
T Consensus 157 dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 234 (299)
T d1nr0a2 157 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA--TDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 234 (299)
T ss_dssp TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEE--EETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred cccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccc
Confidence 9999999998877543 3455678999999999999988 4489999999998776543 4567899999999999
Q ss_pred CCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 565 DETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 565 dg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
++.+|++|+.||.|+|||+......
T Consensus 235 ~~~~l~sgs~dg~i~iwd~~~~~~~ 259 (299)
T d1nr0a2 235 DNVRLATGSLDNSVIVWNMNKPSDH 259 (299)
T ss_dssp TSSEEEEEETTSCEEEEETTCTTSC
T ss_pred cccceEEEcCCCEEEEEECCCCCcc
Confidence 9999999999999999999876543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=1.1e-26 Score=234.93 Aligned_cols=253 Identities=13% Similarity=0.256 Sum_probs=215.7
Q ss_pred eeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEE
Q psy4876 327 DHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHD 403 (609)
Q Consensus 327 ~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd 403 (609)
....++. |.+.|++|+|+|++++||+|+.||.|+|||+.+++.+..+..|...|.+++| ++.++++|+.|+.+.+|+
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence 3445676 9999999999999999999999999999999999999999999999999999 578999999999999999
Q ss_pred cCCCC---eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCc
Q psy4876 404 VRSRD---HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPN 480 (609)
Q Consensus 404 ~~~~~---~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 480 (609)
..... .....+.+|........... +..++.+..|.....|+.... ........+...+....+.+.+ .
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~ 197 (340)
T d1tbga_ 126 LKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETG------QQTTTFTGHTGDVMSLSLAPDT-R 197 (340)
T ss_dssp SSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTT------EEEEEEECCSSCEEEEEECTTS-S
T ss_pred ccccccccccceeccccccccccccccc-ccccccccccccccccccccc------cccccccccceeEeeecccccc-c
Confidence 87543 24456777877776665554 457788888999999998776 5556666778889999999876 4
Q ss_pred EEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe--CCCCCE
Q psy4876 481 VLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH--GHSARV 557 (609)
Q Consensus 481 llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~--~h~~~V 557 (609)
++++|+ .|+.|++||+++++++..+..+ ..|.+++|+|++++|+++ +.|+.|++||+.....+..+. .|...|
T Consensus 198 ~~~~~~--~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~--s~d~~i~~~~~~~~~~~~~~~~~~~~~~i 273 (340)
T d1tbga_ 198 LFVSGA--CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG--SDDATCRLFDLRADQELMTYSHDNIICGI 273 (340)
T ss_dssp EEEEEE--TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE--ETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred eeEEee--cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEE--eCCCeEEEEeecccccccccccccccCce
Confidence 666653 8999999999999999998865 589999999999999984 489999999999988877663 466789
Q ss_pred EEEEEeCCCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 558 LNLAMSPDETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 558 ~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
.+++|+|++.+|++|+.||.|+|||+.+++....
T Consensus 274 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 307 (340)
T d1tbga_ 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307 (340)
T ss_dssp EEEEECSSSCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCcEEEE
Confidence 9999999999999999999999999988766543
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.5e-27 Score=238.25 Aligned_cols=287 Identities=14% Similarity=0.130 Sum_probs=214.0
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccC
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQE 346 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spd 346 (609)
+-.|++|+|+|++ +++++.||+|+|||+.... ........+.|...|.+++|+|+
T Consensus 11 ~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~-----------------------~~~~~~~~~~h~~~V~~v~f~~~ 67 (342)
T d1yfqa_ 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA-----------------------KNVDLLQSLRYKHPLLCCNFIDN 67 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT-----------------------TEEEEEEEEECSSCEEEEEEEES
T ss_pred CCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCC-----------------------cceEEEEecCCCCCEEEEEEeCC
Confidence 3469999999986 6678889999999997621 11223333448999999999997
Q ss_pred C-CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe---cCCEEEEEecCCeEEEEEcCCCCee---EEEEccC--
Q psy4876 347 G-YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRDHK---VALLQNH-- 417 (609)
Q Consensus 347 g-~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~~~~~---~~~~~~h-- 417 (609)
+ .+|++|+.||.|++|++..+........+...+....+ +...+++++.++.+++||++..... ......+
T Consensus 68 ~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~ 147 (342)
T d1yfqa_ 68 TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT 147 (342)
T ss_dssp SSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS
T ss_pred CCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccc
Confidence 5 68999999999999999988877777665544433332 6789999999999999998754322 2222222
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEE
Q psy4876 418 TQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWN 497 (609)
Q Consensus 418 ~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd 497 (609)
......+.+.+++..+++++.|+.|++||+...... ........+...+.+..+.+.....+++++ .||.+.+|+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~dg~~~v~~ 222 (342)
T d1yfqa_ 148 KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD---NGTIEESGLKYQIRDVALLPKEQEGYACSS--IDGRVAVEF 222 (342)
T ss_dssp SSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC---CCEEEECSCSSCEEEEEECSGGGCEEEEEE--TTSEEEEEE
T ss_pred cceeeeeeeeccCCceeeecCCCcEEEEecccCccc---ceeeeecccccceeeeEeecCCCCEEEeec--CCCeEEEEE
Confidence 234456677888999999999999999999876432 223334445566778888877767777764 899999999
Q ss_pred CCCCcee------EEE----------cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEE
Q psy4876 498 VSSGACL------DSI----------DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLA 561 (609)
Q Consensus 498 ~~t~~~~------~~~----------~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~ 561 (609)
....... ..+ .+...+.+++|+|++++|++ |+.||.|+|||+.+++++..+..+ ..+..++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~las--g~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~ 299 (342)
T d1yfqa_ 223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT--AGSDGIISCWNLQTRKKIKNFAKF-NEDSVVK 299 (342)
T ss_dssp CCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEE--EETTSCEEEEETTTTEEEEECCCC-SSSEEEE
T ss_pred ecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEE--ECCCCEEEEEECCCCcEEEEecCC-CCCEEEE
Confidence 8654321 111 12236899999999999998 448999999999999999888643 3455678
Q ss_pred EeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 562 MSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 562 ~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
|+|+|++|++|+.|+++++|.....
T Consensus 300 ~s~~~~~l~~a~sdd~~~~~~~~~~ 324 (342)
T d1yfqa_ 300 IACSDNILCLATSDDTFKTNAAIDQ 324 (342)
T ss_dssp EEECSSEEEEEEECTHHHHCSSSCT
T ss_pred EEeCCCEEEEEEcCCcEEEeeeeCC
Confidence 8899999999999999888876543
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.1e-27 Score=249.02 Aligned_cols=274 Identities=15% Similarity=0.198 Sum_probs=190.8
Q ss_pred eeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeee-eeecCCCCeEEEEE-----
Q psy4876 270 YYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHL-MDLEGNENVCSVAW----- 343 (609)
Q Consensus 270 ~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~h~~~V~~v~~----- 343 (609)
..|.+|+++++.+++++.|++|+|||..+.+.. ...... ....|...+..+..
T Consensus 15 ~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (393)
T d1sq9a_ 15 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNE---------------------NPKDKSYSHFVHKSGLHHVDVLQAIE 73 (393)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCTTC---------------------CGGGGEEEEECCTTCEEEEEEEEEEE
T ss_pred CccEEEEEeCCEEEEEECCCeEEEEECCCCCCC---------------------cccceeEeeeeccCCceEeeeEeeec
Confidence 357788998888999999999999998762110 001111 11113333322222
Q ss_pred -cc-CCCEEEEEeCCCeEEEEeCCCCeeE-----EEe-----cCCCCceEEEEec-------CCEEEEEecCCeEEEEEc
Q psy4876 344 -IQ-EGYMLGVGTSLGTVQLWDVSAKKKC-----RTM-----DGHDVRVGALAWN-------TYILSSGSRCGNIVHHDV 404 (609)
Q Consensus 344 -sp-dg~~Lasgs~dg~I~iwd~~~~~~~-----~~l-----~~h~~~V~~l~~~-------~~~L~sgs~dg~I~iwd~ 404 (609)
+. ++.++++++.||.|++|++...... ... ..+...+..++|. +.++++++.||.|.+|++
T Consensus 74 ~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~ 153 (393)
T d1sq9a_ 74 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 153 (393)
T ss_dssp TTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred cCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEe
Confidence 11 2357889999999999997543211 111 1244567777772 468899999999999998
Q ss_pred CCCCe-----------------eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcc
Q psy4876 405 RSRDH-----------------KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA 467 (609)
Q Consensus 405 ~~~~~-----------------~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 467 (609)
..... .......+...+.+++|+|++ +||+|+.|+.|+|||+.+++..........+.+|..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~ 232 (393)
T d1sq9a_ 154 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 232 (393)
T ss_dssp ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred ecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccc
Confidence 53210 011122355678999999998 899999999999999998743322333445667999
Q ss_pred cEEEEEEcCCCCcEEEEEeccCCC---eEEEEECCCCceeEEEc--------------CCCCeEEEEEcCCCCeEEEEEe
Q psy4876 468 AVKAIAWCPWSPNVLASGGGTADR---HIYFWNVSSGACLDSID--------------TKSQVCALLWNSDYKELVSAHG 530 (609)
Q Consensus 468 ~V~~l~~sp~~~~llasggGs~Dg---~I~iwd~~t~~~~~~~~--------------~~~~v~sl~~s~~g~~l~~~sG 530 (609)
+|.+++|+|++. +|++|+ .|+ .|++||+.+++++..+. +...|++++|+|++++|+++
T Consensus 233 ~V~~l~~spdg~-~l~sgs--~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~-- 307 (393)
T d1sq9a_ 233 SIRSVKFSPQGS-LLAIAH--DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA-- 307 (393)
T ss_dssp CEEEEEECSSTT-EEEEEE--EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE--
T ss_pred eEEEcccccccc-eeeeec--CCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEE--
Confidence 999999999985 666664 554 69999999999888774 33579999999999999984
Q ss_pred cCCCeEEEEECCCCceEEEEeCCCCCEE----EEEEeCCCCEEE
Q psy4876 531 FAQNQLIIWKYPSLVKVAELHGHSARVL----NLAMSPDETTVL 570 (609)
Q Consensus 531 ~~dg~I~Iwd~~~~~~~~~l~~h~~~V~----~l~~spdg~~L~ 570 (609)
+.|++|+|||+.+++++..+.+|.+.|. .++|++++..++
T Consensus 308 s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~ 351 (393)
T d1sq9a_ 308 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 351 (393)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred CCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEE
Confidence 4899999999999999999999975543 244555554433
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=5.8e-27 Score=239.41 Aligned_cols=247 Identities=17% Similarity=0.181 Sum_probs=203.0
Q ss_pred CCCeEEEEEccCCCEEEEEeCCC-eEEEEeCCCC--eeEEEecCCC-CceEEEEe----cCCEEEEEecCCeEEEEEcCC
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLG-TVQLWDVSAK--KKCRTMDGHD-VRVGALAW----NTYILSSGSRCGNIVHHDVRS 406 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg-~I~iwd~~~~--~~~~~l~~h~-~~V~~l~~----~~~~L~sgs~dg~I~iwd~~~ 406 (609)
...+++++|+|+|+.||+++.+. .|+.||.... ..+..+.+|. ..|++++| ++.+|++|+.||+|++||+..
T Consensus 17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~ 96 (325)
T d1pgua1 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF 96 (325)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence 45678999999999999887654 3566765443 4567788874 67999999 357999999999999999875
Q ss_pred CCe-------eEEEEccCCCCeEEEEEccCCCEEEEEeC--CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCC
Q psy4876 407 RDH-------KVALLQNHTQEVCGLKWSPDGRYLASGGN--DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW 477 (609)
Q Consensus 407 ~~~-------~~~~~~~h~~~V~~l~~spdg~~lasgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 477 (609)
... ....+..|...|.+++|+++|++|++++. ++.+.+|+.+++ +.+..+.+|...|.+++|+|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~ 170 (325)
T d1pgua1 97 DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG------NSLGEVSGHSQRINACHLKQS 170 (325)
T ss_dssp EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC------CEEEECCSCSSCEEEEEECSS
T ss_pred CcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc------ccceeeeeccccccccccccc
Confidence 421 12335678899999999999999988765 678999999987 788889999999999999999
Q ss_pred CCcEEEEEeccCCCeEEEEECCCCceeEEEcC----CCCeEEEEEcCCC-CeEEEEEecCCCeEEEEECCCCceEEEEeC
Q psy4876 478 SPNVLASGGGTADRHIYFWNVSSGACLDSIDT----KSQVCALLWNSDY-KELVSAHGFAQNQLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 478 ~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~----~~~v~sl~~s~~g-~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~ 552 (609)
++.++++++ .|+.|++||+..++....+.. ...|.+++|+|++ .++++ ++.|+.|++||..+++.+..+.+
T Consensus 171 ~~~~~~~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s--~~~d~~i~iwd~~~~~~~~~l~~ 246 (325)
T d1pgua1 171 RPMRSMTVG--DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT--VGSDRKISCFDGKSGEFLKYIED 246 (325)
T ss_dssp SSCEEEEEE--TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEE--EETTCCEEEEETTTCCEEEECCB
T ss_pred ccceEEEee--cccccccccccccccceecccccCCCCccEEeeeccccceeccc--cccccceeeeeeccccccccccc
Confidence 988888774 899999999998887776643 2469999999975 56666 44899999999999999999999
Q ss_pred CCCCEEEEEEe---CCCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 553 HSARVLNLAMS---PDETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 553 h~~~V~~l~~s---pdg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
|...+.++.|+ |||++|++++.|+.|+|||+.+++..+.
T Consensus 247 ~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~ 288 (325)
T d1pgua1 247 DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK 288 (325)
T ss_dssp TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred cccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 98887766666 7899999999999999999998776544
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.2e-25 Score=227.58 Aligned_cols=246 Identities=23% Similarity=0.358 Sum_probs=195.0
Q ss_pred eec-CCCCe-EEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCC
Q psy4876 331 DLE-GNENV-CSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSR 407 (609)
Q Consensus 331 ~~~-h~~~V-~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~ 407 (609)
++. |...| +|++| ++++||+|+.||.|+|||+.+++.+.++.+|...|.+++| ++.+|++|+.||.|++|++...
T Consensus 7 tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~ 84 (355)
T d1nexb2 7 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG 84 (355)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTT
T ss_pred EECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccccc
Confidence 455 77765 66655 6889999999999999999999999999999999999999 4689999999999999999986
Q ss_pred CeeEEEEccC--CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCC-----------------ccceEeecCCccc
Q psy4876 408 DHKVALLQNH--TQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS-----------------TQPIHSLSRHQAA 468 (609)
Q Consensus 408 ~~~~~~~~~h--~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~-----------------~~~~~~~~~h~~~ 468 (609)
. .......+ ...+..+.+++++.++++++.|+.|++||+........ ...+.....|...
T Consensus 85 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (355)
T d1nexb2 85 C-CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 163 (355)
T ss_dssp E-EEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSC
T ss_pred c-cccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccc
Confidence 4 44333333 33455667788999999999999999999987532110 0112222334444
Q ss_pred EEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE
Q psy4876 469 VKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKV 547 (609)
Q Consensus 469 V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~ 547 (609)
+.... +++ .+++++. .|+.|++||+.+++.+...... ..+.++.|++++..++++ ..|+.|++||..++..+
T Consensus 164 v~~~~--~~~-~~~~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~~ 236 (355)
T d1nexb2 164 VRTVS--GHG-NIVVSGS--YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA--SMDTTIRIWDLENGELM 236 (355)
T ss_dssp EEEEE--EET-TEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEE--ETTSCEEEEETTTCCEE
T ss_pred ccccc--ccc-ceeeeec--ccceeeeeecccccceeeeeccccccccccccccceeeecc--cccceEEeeeccccccc
Confidence 44433 344 4666653 8999999999999988887754 588999999999999984 48999999999999999
Q ss_pred EEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 548 AELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 548 ~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
..+.+|...|.+++|+ +++|++++.||.|++||+.+...
T Consensus 237 ~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~ 275 (355)
T d1nexb2 237 YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR 275 (355)
T ss_dssp EEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCE
T ss_pred cccccccccccccccc--cceeeeeecccccccccccccce
Confidence 9999999999999986 46999999999999999987654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=5.5e-26 Score=226.32 Aligned_cols=258 Identities=14% Similarity=0.194 Sum_probs=198.5
Q ss_pred ceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 269 DYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 269 ~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
...|.+|+|+| +++++.||.|++||+.+ +. -.|...|.+++|++++
T Consensus 13 ~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~-------------------------~~------~~h~~~V~~~~~~~~~- 58 (287)
T d1pgua2 13 NKGITALTVNP--LISGSYDGRIMEWSSSS-------------------------MH------QDHSNLIVSLDNSKAQ- 58 (287)
T ss_dssp SSCEEEEETTT--TEEEETTSCEEETTTTE-------------------------EE------CCCCSCEEEEECCSTT-
T ss_pred CCceEEEEECc--EEEEeCCCeEEEEECCC-------------------------CC------CCCCCCEEEEEecCCC-
Confidence 44689999998 99999999999999876 21 1388899999998765
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec-CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEc
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN-TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWS 427 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 427 (609)
.+++++.|++|++|++...+ ....+.++++. ...++..+.++.+.+|+..... .+..+..+ ..+ .+++
T Consensus 59 ~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~--~~~~ 127 (287)
T d1pgua2 59 EYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD-IIKSVRLN-SPG--SAVS 127 (287)
T ss_dssp CCEEEETTTEEEETTEEEEE-------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCC-EEEEEECS-SCE--EEEE
T ss_pred eEEEEeeccccccccccccc-------cccceeeeeeccCCceEEEeecccceeeecccee-eeeecccc-cee--eeee
Confidence 57889999999999975422 23456667773 4555566677789999988864 55555433 333 4567
Q ss_pred cCCCEEEEEeCCC-cEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeE
Q psy4876 428 PDGRYLASGGNDN-LLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLD 505 (609)
Q Consensus 428 pdg~~lasgs~Dg-~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~ 505 (609)
+++..+++++.|+ .|++|++... .....+ ..|...+.+++|+|++. +|++| +.|+.|++||+.++....
T Consensus 128 ~~~~~~~v~~~~~~~v~~~~~~~~------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g--~~dg~i~i~d~~~~~~~~ 198 (287)
T d1pgua2 128 LSQNYVAVGLEEGNTIQVFKLSDL------EVSFDLKTPLRAKPSYISISPSET-YIAAG--DVMGKILLYDLQSREVKT 198 (287)
T ss_dssp ECSSEEEEEETTTSCEEEEETTEE------EEEEECSSCCSSCEEEEEECTTSS-EEEEE--ETTSCEEEEETTTTEEEE
T ss_pred ccCcceeeeccccceeeeeecccc------ceeeeeeeccCCceeEEEeccCcc-ccccc--cccccccceeeccccccc
Confidence 7888888888765 7999998765 333333 35778899999999985 55665 389999999999888765
Q ss_pred E-EcC-CCCeEEEEEcCCC----------CeEEEEEecCCCeEEEEECCC-CceEEEEeCCCCCEEEEEEeCCCCEEEEE
Q psy4876 506 S-IDT-KSQVCALLWNSDY----------KELVSAHGFAQNQLIIWKYPS-LVKVAELHGHSARVLNLAMSPDETTVLSA 572 (609)
Q Consensus 506 ~-~~~-~~~v~sl~~s~~g----------~~l~~~sG~~dg~I~Iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~L~s~ 572 (609)
. +.. ...|.+++|+|.+ .++++ |+.|+.|+|||+.. .+.+..+.+|...|++++|+|++ .|+++
T Consensus 199 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~s--gs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~ 275 (287)
T d1pgua2 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT--GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSS 275 (287)
T ss_dssp CCSCCCSSCEEEEEECCCC------CCSCCEEEE--EETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEE
T ss_pred ccccccccccceeeecccccccccccCCCCeeEe--ecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEE
Confidence 4 333 4589999998754 45665 55899999999976 55667778999999999999986 58999
Q ss_pred ECCCCEEEEEc
Q psy4876 573 GADETLRLWKI 583 (609)
Q Consensus 573 s~Dg~I~iWdl 583 (609)
+.|++|++|++
T Consensus 276 g~D~~v~iW~i 286 (287)
T d1pgua2 276 GADACIKRWNV 286 (287)
T ss_dssp ETTSCEEEEEE
T ss_pred ECCCeEEEEEE
Confidence 99999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.5e-25 Score=225.82 Aligned_cols=248 Identities=23% Similarity=0.356 Sum_probs=192.1
Q ss_pred ceeeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEE
Q psy4876 325 AIDHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHD 403 (609)
Q Consensus 325 ~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd 403 (609)
..+....+. |.+.|.+ +++++|++||+|+.||.|+|||+.++++++++.+|...|.+++|++.+|++|+.|+.+++|+
T Consensus 5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~ 83 (342)
T d2ovrb2 5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWN 83 (342)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred CCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccccccc
Confidence 344444555 9888865 46678999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeEEEEccCCCCeE--------------------------------------EEEEccCCCEEEEEeCCCcEEEE
Q psy4876 404 VRSRDHKVALLQNHTQEVC--------------------------------------GLKWSPDGRYLASGGNDNLLNIW 445 (609)
Q Consensus 404 ~~~~~~~~~~~~~h~~~V~--------------------------------------~l~~spdg~~lasgs~Dg~I~iw 445 (609)
..... .......+...+. ...+......+++++.|+.|++|
T Consensus 84 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 162 (342)
T d2ovrb2 84 AETGE-CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 162 (342)
T ss_dssp TTTTE-EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEE
T ss_pred ccccc-ceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEe
Confidence 87642 2222221111111 11233345567888888999999
Q ss_pred eCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCC-CeEEEEEcCCCCe
Q psy4876 446 SGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKS-QVCALLWNSDYKE 524 (609)
Q Consensus 446 d~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~-~v~sl~~s~~g~~ 524 (609)
|.... ..+..+.+|...+..+.+. + ..+++|+ .|+.|++||++.++++..+..+. .+.++.+++ ++
T Consensus 163 d~~~~------~~~~~~~~~~~~~~~~~~~--~-~~l~s~~--~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~ 229 (342)
T d2ovrb2 163 DPETE------TCLHTLQGHTNRVYSLQFD--G-IHVVSGS--LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NI 229 (342)
T ss_dssp EGGGT------EEEEEECCCSSCEEEEEEC--S-SEEEEEE--TTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TE
T ss_pred ecccc------eeeEEEcCcccccccccCC--C-CEEEEEe--CCCeEEEeecccceeeeEecccccceeEEecCC--CE
Confidence 88776 6778888888877776664 4 4566664 89999999999999998887664 677776654 57
Q ss_pred EEEEEecCCCeEEEEECCCCceEEEEeC---CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 525 LVSAHGFAQNQLIIWKYPSLVKVAELHG---HSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 525 l~~~sG~~dg~I~Iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
+++ |+.|+.|++||....+....+.+ |...+.++.+ ++.++++|+.||+|+|||+.+++..+.
T Consensus 230 l~s--~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~ 295 (342)
T d2ovrb2 230 LVS--GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRN 295 (342)
T ss_dssp EEE--EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEE--EcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEE
Confidence 777 45899999999999988888865 4556776666 466999999999999999998876543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=6.5e-26 Score=231.68 Aligned_cols=273 Identities=11% Similarity=0.032 Sum_probs=207.8
Q ss_pred EEecC-CC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEE
Q psy4876 275 IDWSH-FN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGV 352 (609)
Q Consensus 275 l~wsp-~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Las 352 (609)
-+||| || ++|.+.+|.|++||+.+ +.... +.|...|.+++|+|||++|++
T Consensus 8 ~~fSP~dG~~~a~~~~g~v~v~d~~~-------------------------~~~~~---~~~~~~v~~~~~spDg~~l~~ 59 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSRGQAFIQDVSG-------------------------TYVLK---VPEPLRIRYVRRGGDTKVAFI 59 (360)
T ss_dssp EEEEECGGGCEEEEETTEEEEECTTS-------------------------SBEEE---CSCCSCEEEEEECSSSEEEEE
T ss_pred ccccCCCCCEEEEEECCeEEEEECCC-------------------------CcEEE---ccCCCCEEEEEECCCCCEEEE
Confidence 57899 76 88888899999999987 55443 358899999999999999987
Q ss_pred EeCCC--eEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEcc
Q psy4876 353 GTSLG--TVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSP 428 (609)
Q Consensus 353 gs~dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp 428 (609)
++.+. .|++||+.+++ +..+..|...|.+++| ++++|++++.++.+++|++.+. .....+..|...+.+++|+|
T Consensus 60 ~~~~~g~~v~v~d~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~sp 137 (360)
T d1k32a3 60 HGTREGDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG-KPTVIERSREAMITDFTISD 137 (360)
T ss_dssp EEETTEEEEEEEETTTCC-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCCEEECT
T ss_pred EEcCCCCEEEEEECCCCc-EEEeeCCCceEEeeeecccccccceecccccccccccccc-ceeeeeecccccccchhhcc
Confidence 76553 79999998765 4567789999999999 6789999999999999999987 46777888999999999999
Q ss_pred CCCEEEEEe----------CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEEC
Q psy4876 429 DGRYLASGG----------NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 429 dg~~lasgs----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~ 498 (609)
||++|+.++ .++.+++||+.++ ....+..+...+..++|+|+|..|+..+ .++.+.+||.
T Consensus 138 dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~-------~~~~~~~~~~~~~~~~~spdg~~l~~~s---~~~~~~~~d~ 207 (360)
T d1k32a3 138 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-------KIFAATTENSHDYAPAFDADSKNLYYLS---YRSLDPSPDR 207 (360)
T ss_dssp TSCEEEEEEEECSSTTCSCCEEEEEEEETTTT-------EEEECSCSSSBEEEEEECTTSCEEEEEE---SCCCCCEECS
T ss_pred ceeeeeeeccccccceeeccccceeeeccccC-------ceeeecccccccccccccCCCCEEEEEe---CCCceEcccc
Confidence 999998754 3456999999876 3345556778889999999997655443 7899999987
Q ss_pred CCCce-------eEEEcC-------------------------------------CCCeEEEEEcCCCCeEEE-------
Q psy4876 499 SSGAC-------LDSIDT-------------------------------------KSQVCALLWNSDYKELVS------- 527 (609)
Q Consensus 499 ~t~~~-------~~~~~~-------------------------------------~~~v~sl~~s~~g~~l~~------- 527 (609)
..... ...+.. ......+...+++...+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (360)
T d1k32a3 208 VVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEF 287 (360)
T ss_dssp SSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSH
T ss_pred cccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCC
Confidence 54321 111110 011223333333322222
Q ss_pred ----EEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 528 ----AHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 528 ----~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
+.+..++.|++||+.+++.. .|.+.|.+++|+|||++|++++.||.|++||+..++....
T Consensus 288 ~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~ 351 (360)
T d1k32a3 288 AAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351 (360)
T ss_dssp HHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEE
T ss_pred eeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceE
Confidence 11346789999999887643 3445699999999999999999999999999998876543
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=8.6e-25 Score=215.01 Aligned_cols=242 Identities=19% Similarity=0.351 Sum_probs=196.1
Q ss_pred eeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCC
Q psy4876 328 HLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRS 406 (609)
Q Consensus 328 ~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~ 406 (609)
++.... |...|+|++| +|++||+|+.||.|+|||+.+++++.++.+|...|.+++|++++|++|+.||.|++|++..
T Consensus 7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~ 84 (293)
T d1p22a2 7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT 84 (293)
T ss_dssp CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSS
T ss_pred EEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeeccccccccccccccc
Confidence 333344 7788998765 7999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 407 RDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 407 ~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
+. .......+.... ..+.+....++++..++.+.+||...... ......+..|...|..+.+.+. .+++++
T Consensus 85 ~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~---~~~~~s 155 (293)
T d1p22a2 85 GE-MLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTD---ITLRRVLVGHRAAVNVVDFDDK---YIVSAS 155 (293)
T ss_dssp CC-EEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSC---CEEEEEECCCSSCEEEEEEETT---EEEEEE
T ss_pred cc-cccccccccccc--ccccccccceeecccccceeEeecccccc---ccccccccccccccccceeccc---cccccc
Confidence 74 444444333333 34556677899999999999999987632 1345566778889988888763 444543
Q ss_pred ccCCCeEEEEECCCCceeEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCC
Q psy4876 487 GTADRHIYFWNVSSGACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPD 565 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t~~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spd 565 (609)
.|+.|++||+.+++++..+..+. .+..+.++ +..+++ +..|+.|+|||+.+...+..+.+|...|.. ++++
T Consensus 156 --~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~ 227 (293)
T d1p22a2 156 --GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVS--GSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFD 227 (293)
T ss_dssp --TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEE--EETTSCEEEEETTTCCEEEEECCCSSCEEE--EECC
T ss_pred --CCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEE--ecCCCEEEEEecccceeeeeecccceeeee--cccc
Confidence 79999999999999998887654 66666665 456777 558999999999999999999999888865 5668
Q ss_pred CCEEEEEECCCCEEEEEcCCCcc
Q psy4876 566 ETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 566 g~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
+.+|++++.||.|++||+.....
T Consensus 228 ~~~l~sg~~dg~i~iwd~~~~~~ 250 (293)
T d1p22a2 228 NKRIVSGAYDGKIKVWDLVAALD 250 (293)
T ss_dssp SSEEEEEETTSCEEEEEHHHHTS
T ss_pred ceEEEEEcCCCEEEEEECCCCcc
Confidence 89999999999999999866443
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.6e-25 Score=234.53 Aligned_cols=250 Identities=17% Similarity=0.247 Sum_probs=188.8
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe------eEEEecCCCCceEEEEe------c---CCEEEEEecCCe
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK------KCRTMDGHDVRVGALAW------N---TYILSSGSRCGN 398 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~------~~~~l~~h~~~V~~l~~------~---~~~L~sgs~dg~ 398 (609)
|.+.|.+|++++ ++|++|+.|+.|+|||..+.+ .......|...+..+.. + ..++++++.||.
T Consensus 13 H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~ 90 (393)
T d1sq9a_ 13 HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGD 90 (393)
T ss_dssp SSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSC
T ss_pred ccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCc
Confidence 999999999864 699999999999999976542 23333345555444333 2 357889999999
Q ss_pred EEEEEcCCCCee--E--EEE-----ccCCCCeEEEEEccC-----CCEEEEEeCCCcEEEEeCCCCCCCC-----C----
Q psy4876 399 IVHHDVRSRDHK--V--ALL-----QNHTQEVCGLKWSPD-----GRYLASGGNDNLLNIWSGVPGQHTF-----S---- 455 (609)
Q Consensus 399 I~iwd~~~~~~~--~--~~~-----~~h~~~V~~l~~spd-----g~~lasgs~Dg~I~iwd~~~~~~~~-----~---- 455 (609)
|++|++...... . ... ..+...+..++|.++ +.++++++.||.|++|++....... .
T Consensus 91 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 170 (393)
T d1sq9a_ 91 LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPT 170 (393)
T ss_dssp EEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCE
T ss_pred EEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccc
Confidence 999998654311 1 111 124566788888875 4679999999999999985432100 0
Q ss_pred ---ccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc-------CCCCeEEEEEcCCCCeE
Q psy4876 456 ---TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID-------TKSQVCALLWNSDYKEL 525 (609)
Q Consensus 456 ---~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~-------~~~~v~sl~~s~~g~~l 525 (609)
.........+...+.+++|+|++ ++++| +.|+.|++||+.+++++..+. +...|.+++|+|+|++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasg--s~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 246 (393)
T d1sq9a_ 171 LELQGTVESPMTPSQFATSVDISERG--LIATG--FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246 (393)
T ss_dssp EEEEEEECCSSSSCCCCCEEEECTTS--EEEEE--CTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred eecccceecccCCCCcEEEEEECCCC--EEEEE--eCCCcEEEEeecccccccccccccccccccceEEEccccccccee
Confidence 01112223455678899999987 77776 489999999999999887664 23589999999999999
Q ss_pred EEEEecCCC---eEEEEECCCCceEEEEe-------------CCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 526 VSAHGFAQN---QLIIWKYPSLVKVAELH-------------GHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 526 ~~~sG~~dg---~I~Iwd~~~~~~~~~l~-------------~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
++++ .|+ .|++||+.++..+..+. +|.+.|++|+|+||+++|+||+.|++|+|||+.+++..
T Consensus 247 ~sgs--~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~ 324 (393)
T d1sq9a_ 247 AIAH--DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 324 (393)
T ss_dssp EEEE--EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred eeec--CCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEE
Confidence 9964 454 59999999998888774 79999999999999999999999999999999998765
Q ss_pred hh
Q psy4876 590 KK 591 (609)
Q Consensus 590 ~k 591 (609)
..
T Consensus 325 ~~ 326 (393)
T d1sq9a_ 325 TT 326 (393)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=9e-26 Score=226.67 Aligned_cols=250 Identities=12% Similarity=0.100 Sum_probs=181.5
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCee---EEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKK---CRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSR 407 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~---~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~ 407 (609)
|.+.|++|+|+|++++||+|+.||+|+|||+..+.. +....+|...|.+++|. +.+|++|+.||.|.+|++...
T Consensus 10 h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~ 89 (342)
T d1yfqa_ 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS 89 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS
T ss_pred CCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccc
Confidence 899999999999999999999999999999976543 23334699999999993 468999999999999999987
Q ss_pred CeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC--cccEEEEEEcCCCCcEEEEE
Q psy4876 408 DHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH--QAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 408 ~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~llasg 485 (609)
.........+........+.+++..+++++.|+.+++||++.+.... ........+ ......+.+.+.+. .++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 166 (342)
T d1yfqa_ 90 PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGV--IAVKNLNSNNTKVKNKIFTMDTNSS-RLIVG 166 (342)
T ss_dssp SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBC--EEEEESCSSSSSSCCCEEEEEECSS-EEEEE
T ss_pred cccccccccccccccccccccccccccccccccccceeeccccccce--eeecccccccccceeeeeeeeccCC-ceeee
Confidence 54444344444555566677788999999999999999987653211 122222222 22334556666654 55555
Q ss_pred eccCCCeEEEEECCCCceeEEE----cCCCCeEEEEEcC-CCCeEEEEEecCCCeEEEEECCCCce------EEE-----
Q psy4876 486 GGTADRHIYFWNVSSGACLDSI----DTKSQVCALLWNS-DYKELVSAHGFAQNQLIIWKYPSLVK------VAE----- 549 (609)
Q Consensus 486 gGs~Dg~I~iwd~~t~~~~~~~----~~~~~v~sl~~s~-~g~~l~~~sG~~dg~I~Iwd~~~~~~------~~~----- 549 (609)
+.|+.|++||+..+...... .....+....+.+ ++..+++ +..+|.+.+|++..... ...
T Consensus 167 --~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~ 242 (342)
T d1yfqa_ 167 --MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC--SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242 (342)
T ss_dssp --ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEE--EETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred --cCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEe--ecCCCeEEEEEecCCcceeeccccceeeeee
Confidence 38999999999876643322 2334556666554 4556666 45899999999754321 111
Q ss_pred ----EeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 550 ----LHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 550 ----l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
..+|...|++|+|+|++.+|+||+.||.|+|||+.++....
T Consensus 243 ~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~ 287 (342)
T d1yfqa_ 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287 (342)
T ss_dssp CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred eccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEE
Confidence 12466789999999999999999999999999999876554
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.92 E-value=1.9e-22 Score=200.45 Aligned_cols=272 Identities=14% Similarity=0.140 Sum_probs=216.2
Q ss_pred EEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEE-EEeCCCeEEE
Q psy4876 283 LAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLG-VGTSLGTVQL 361 (609)
Q Consensus 283 la~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~La-sgs~dg~I~i 361 (609)
++.+.|++|.|||+++ +++. .++.....+..++|+|||++|+ ++..++.|++
T Consensus 6 V~~~~~~~v~v~D~~t-------------------------~~~~--~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v 58 (301)
T d1l0qa2 6 IANSESDNISVIDVTS-------------------------NKVT--ATIPVGSNPMGAVISPDGTKVYVANAHSNDVSI 58 (301)
T ss_dssp EEETTTTEEEEEETTT-------------------------TEEE--EEEECSSSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred EEECCCCEEEEEECCC-------------------------CeEE--EEEECCCCceEEEEeCCCCEEEEEECCCCEEEE
Confidence 4566789999999988 5544 3444456788999999999875 5667899999
Q ss_pred EeCCCCeeEEEecCCCCceEEEEe--cCC-EEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEE-Ee
Q psy4876 362 WDVSAKKKCRTMDGHDVRVGALAW--NTY-ILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLAS-GG 437 (609)
Q Consensus 362 wd~~~~~~~~~l~~h~~~V~~l~~--~~~-~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-gs 437 (609)
||+.+++.+..+..+.. +..+.| ++. .++++..++.+.+|+..++ .....+. +...+.++.|+|+|..++. +.
T Consensus 59 ~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~ 135 (301)
T d1l0qa2 59 IDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSN-TVAGTVK-TGKSPLGLALSPDGKKLYVTNN 135 (301)
T ss_dssp EETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-CSSSEEEEEECTTSSEEEEEET
T ss_pred EECCCCceeeeeecccc-ccccccccccccccccccccceeeecccccc-eeeeecc-ccccceEEEeecCCCeeeeeec
Confidence 99999999999987654 577888 444 5556667889999999886 4555555 4456788999999998754 55
Q ss_pred CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEE
Q psy4876 438 NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALL 517 (609)
Q Consensus 438 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~ 517 (609)
.++.+.+|+..+. ..+..+.. ...+..++++|++..+++++ ..++.+.+|+.........+.....+..++
T Consensus 136 ~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (301)
T d1l0qa2 136 GDKTVSVINTVTK------AVINTVSV-GRSPKGIAVTPDGTKVYVAN--FDSMSISVIDTVTNSVIDTVKVEAAPSGIA 206 (301)
T ss_dssp TTTEEEEEETTTT------EEEEEEEC-CSSEEEEEECTTSSEEEEEE--TTTTEEEEEETTTTEEEEEEECSSEEEEEE
T ss_pred cccceeeeecccc------ceeeeccc-CCCceEEEeeccccceeeec--ccccccccccccceeeeecccccCCcceee
Confidence 6788999999887 55555553 45578999999998777765 367889999999988888888888899999
Q ss_pred EcCCCCeEEEEE-ecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEE-EEEECCCCEEEEEcCCCccchhhhh
Q psy4876 518 WNSDYKELVSAH-GFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTV-LSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 518 ~s~~g~~l~~~s-G~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L-~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
|++++..++++. +..++.|.+||..+++.+..+..+ ..+.+++|+|||++| ++++.|++|++||+.+++.......
T Consensus 207 ~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 999999987654 334678999999999998888654 568999999999987 5667799999999999877655443
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=2e-23 Score=207.52 Aligned_cols=230 Identities=13% Similarity=0.118 Sum_probs=181.6
Q ss_pred eeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEc
Q psy4876 327 DHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDV 404 (609)
Q Consensus 327 ~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~ 404 (609)
+.+..+. |...|++++|+| |++|+.||.|++||+.++ ..+|...|.++.+ .+..+++++.|++|++|++
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~ 74 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGI 74 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTTCCEEEETTTEEEETTE
T ss_pred ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCCeEEEEeeccccccccc
Confidence 4566777 999999999987 899999999999998764 3589999999999 4678899999999999987
Q ss_pred CCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 405 RSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 405 ~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
... .+...+.++++++++..+++++ ++.+.+|+...+ ..+..+..+ ..+ .++++++..+++.
T Consensus 75 ~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~-~~~--~~~~~~~~~~~v~ 136 (287)
T d1pgua2 75 TKH--------EFGSQPKVASANNDGFTAVLTN-DDDLLILQSFTG------DIIKSVRLN-SPG--SAVSLSQNYVAVG 136 (287)
T ss_dssp EEE--------ECSSCEEEEEECSSSEEEEEET-TSEEEEEETTTC------CEEEEEECS-SCE--EEEEECSSEEEEE
T ss_pred ccc--------ccccceeeeeeccCCceEEEee-cccceeeeccce------eeeeecccc-cee--eeeeccCcceeee
Confidence 542 1345678889999887776654 567889998877 555555433 333 4456666545444
Q ss_pred EeccCCCeEEEEECCCCceeEEEcC--CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE-EeCCCCCEEEEE
Q psy4876 485 GGGTADRHIYFWNVSSGACLDSIDT--KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE-LHGHSARVLNLA 561 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t~~~~~~~~~--~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~-l~~h~~~V~~l~ 561 (609)
+ ..++.+++|++........+.. ...+.+++|+|++.+|++ |..||.|++||+.++..+.. +.+|..+|.+++
T Consensus 137 ~--~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~ 212 (287)
T d1pgua2 137 L--EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA--GDVMGKILLYDLQSREVKTSRWAFRTSKINAIS 212 (287)
T ss_dssp E--TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEEEECCSCCCSSCEEEEE
T ss_pred c--cccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccc--ccccccccceeecccccccccccccccccceee
Confidence 3 3567899999987666655543 357999999999999998 55899999999999887654 578999999999
Q ss_pred EeCC----------CCEEEEEECCCCEEEEEcCCCc
Q psy4876 562 MSPD----------ETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 562 ~spd----------g~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
|+|+ +.+|++|+.|++|+|||+....
T Consensus 213 ~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~ 248 (287)
T d1pgua2 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM 248 (287)
T ss_dssp ECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred ecccccccccccCCCCeeEeecCCCeEEEEECCCCC
Confidence 9875 4689999999999999997644
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.89 E-value=1.5e-21 Score=198.90 Aligned_cols=254 Identities=10% Similarity=0.069 Sum_probs=186.2
Q ss_pred eeEEEEEecCCC--eEEEEcCC--eEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEcc
Q psy4876 270 YYLNLIDWSHFN--VLAVALGG--SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQ 345 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~sp 345 (609)
..|.+++|+||+ ++.++.+. .|++||+.+ +....+. .|...|.+++|+|
T Consensus 43 ~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~-------------------------~~~~~~~--~~~~~v~~~~~sp 95 (360)
T d1k32a3 43 LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT-------------------------GKAEKFE--ENLGNVFAMGVDR 95 (360)
T ss_dssp SCEEEEEECSSSEEEEEEEETTEEEEEEEETTT-------------------------CCEEECC--CCCCSEEEEEECT
T ss_pred CCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC-------------------------CcEEEee--CCCceEEeeeecc
Confidence 357899999997 44455543 799999988 5544332 3889999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEe----------cCCeEEEEEcCCCCeeEEE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGS----------RCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs----------~dg~I~iwd~~~~~~~~~~ 413 (609)
+|++|++++.++.+++|++.+++....+..|...+.+++| ++.+|+.+. .++.+++||+.++ ....
T Consensus 96 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~--~~~~ 173 (360)
T d1k32a3 96 NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR--KIFA 173 (360)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT--EEEE
T ss_pred cccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccC--ceee
Confidence 9999999999999999999999999999999999999999 578887553 3456899999876 3455
Q ss_pred EccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCc-------------------------------------
Q psy4876 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFST------------------------------------- 456 (609)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~------------------------------------- 456 (609)
+..|...+.+++|+|||++|++++.|+.+.+||..........
T Consensus 174 ~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 253 (360)
T d1k32a3 174 ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY 253 (360)
T ss_dssp CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGG
T ss_pred ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccc
Confidence 6667888999999999999999999999999986543210000
Q ss_pred cceEeecCCcccEEEEEEcCCCCcEEEE----------EeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEE
Q psy4876 457 QPIHSLSRHQAAVKAIAWCPWSPNVLAS----------GGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELV 526 (609)
Q Consensus 457 ~~~~~~~~h~~~V~~l~~sp~~~~llas----------ggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~ 526 (609)
..+..+....+....+...+++...+.. ..++.++.|++||+.+++.... ...|.+++|+|||++|+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~~v~~~~~SpDG~~l~ 330 (360)
T d1k32a3 254 KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV---KNNLTDLRLSADRKTVM 330 (360)
T ss_dssp GGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE---EEEEEEEEECTTSCEEE
T ss_pred cceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEe---cCCcCEEEECCCCCEEE
Confidence 0011111112233334444332111111 1134688999999998775432 24589999999999999
Q ss_pred EEEecCCCeEEEEECCCCceEEEEeCCCCCE
Q psy4876 527 SAHGFAQNQLIIWKYPSLVKVAELHGHSARV 557 (609)
Q Consensus 527 ~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V 557 (609)
++ ..||.|++||+..++....+..+..++
T Consensus 331 ~~--~~Dg~i~v~d~~~~~~~~~~~~d~~~~ 359 (360)
T d1k32a3 331 VR--KDDGKIYTFPLEKPEDERTVETDKRPL 359 (360)
T ss_dssp EE--ETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred EE--ECCCeEEEEECCCCCcceEEEeccccc
Confidence 94 489999999999998877776555543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=3.9e-21 Score=193.54 Aligned_cols=272 Identities=13% Similarity=0.080 Sum_probs=198.3
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEEE-EEeCCCeE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYMLG-VGTSLGTV 359 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~La-sgs~dg~I 359 (609)
+++++.|+.|+|||+++ +++.....+. +...+.+++|+|||++|+ +++.++.|
T Consensus 4 ~vt~~~d~~v~v~D~~s-------------------------~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v 58 (337)
T d1pbyb_ 4 ILAPARPDKLVVIDTEK-------------------------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESL 58 (337)
T ss_dssp EEEEETTTEEEEEETTT-------------------------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEE
T ss_pred EEEEcCCCEEEEEECCC-------------------------CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeE
Confidence 67899999999999998 6655544444 456788999999999875 56778999
Q ss_pred EEEeCCCCeeEEEecCCCCc-----eEEEEe--cCCEEEEEe------------cCCeEEEEEcCCCCeeEEEEccCCCC
Q psy4876 360 QLWDVSAKKKCRTMDGHDVR-----VGALAW--NTYILSSGS------------RCGNIVHHDVRSRDHKVALLQNHTQE 420 (609)
Q Consensus 360 ~iwd~~~~~~~~~l~~h~~~-----V~~l~~--~~~~L~sgs------------~dg~I~iwd~~~~~~~~~~~~~h~~~ 420 (609)
.+||+.+++.+..+..+... +..++| ++..++++. .++.+.+||..+. .....+. +...
T Consensus 59 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~-~~~~ 136 (337)
T d1pbyb_ 59 VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL-SRRKAFE-APRQ 136 (337)
T ss_dssp EEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT-EEEEEEE-CCSS
T ss_pred EEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC-eEEEecc-ccCC
Confidence 99999999999888765433 345666 567777665 3567889999987 3555555 4566
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcE-------------EEEE--
Q psy4876 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNV-------------LASG-- 485 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-------------lasg-- 485 (609)
+.+++|+|||+++++++. .+.+||..++ +....+..+... ....+.+++..+ ....
T Consensus 137 ~~~~~~s~dg~~l~~~~~--~~~~~d~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (337)
T d1pbyb_ 137 ITMLAWARDGSKLYGLGR--DLHVMDPEAG------TLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARK 207 (337)
T ss_dssp CCCEEECTTSSCEEEESS--SEEEEETTTT------EEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBT
T ss_pred ceEEEEcCCCCEEEEEcC--CcceeeeecC------cEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeee
Confidence 889999999999999865 4788998876 333333221110 011111111100 0000
Q ss_pred ------eccCCCeEEEEECCCCceeEEE--cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCE
Q psy4876 486 ------GGTADRHIYFWNVSSGACLDSI--DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARV 557 (609)
Q Consensus 486 ------gGs~Dg~I~iwd~~t~~~~~~~--~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V 557 (609)
.+..++.+.+||+.++...... .....+..+.+++++.+++.. ++.|++||+.+++.+..+. +...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~d~~~~~~~~~~~-~~~~~ 282 (337)
T d1pbyb_ 208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA----YNVLESFDLEKNASIKRVP-LPHSY 282 (337)
T ss_dssp TSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE----ESEEEEEETTTTEEEEEEE-CSSCC
T ss_pred ccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc----cccEEEEECCCCcEEEEEc-CCCCE
Confidence 0124567999999988865543 234578889999999998763 5899999999999998875 56778
Q ss_pred EEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 558 LNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 558 ~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
.+++|+|||++|++++.|+.|+|||..+.+..+....
T Consensus 283 ~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 283 YSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp CEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 9999999999999999999999999999887665544
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.88 E-value=4.4e-21 Score=202.92 Aligned_cols=288 Identities=8% Similarity=0.024 Sum_probs=198.9
Q ss_pred EEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec----CCCCeEEEEEcc
Q psy4876 272 LNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE----GNENVCSVAWIQ 345 (609)
Q Consensus 272 v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----h~~~V~~v~~sp 345 (609)
+..++||||| +++++.|++|++||+.+ ++...+.++. |...+.+++|+|
T Consensus 64 ~~~vafSPDGk~l~~~~~d~~v~vwd~~t-------------------------~~~~~~~~i~~~~~~~~~~~s~~~sp 118 (426)
T d1hzua2 64 VHISRMSASGRYLLVIGRDARIDMIDLWA-------------------------KEPTKVAEIKIGIEARSVESSKFKGY 118 (426)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTS-------------------------SSCEEEEEEECCSEEEEEEECCSTTC
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEccC-------------------------CceeEEEEEeCCCCCcceEEeeeecC
Confidence 6789999997 55677899999999998 5544444433 556677788889
Q ss_pred CCCEEEEE-eCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-------------cCCEEEE-EecCCeEEEEEcCCCCee
Q psy4876 346 EGYMLGVG-TSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-------------NTYILSS-GSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 346 dg~~Lasg-s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-------------~~~~L~s-gs~dg~I~iwd~~~~~~~ 410 (609)
||++|+++ ..++.+.+||..++..+..+..|...+....+ ++..++. ....+.+.+++.......
T Consensus 119 DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~ 198 (426)
T d1hzua2 119 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL 198 (426)
T ss_dssp TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSC
T ss_pred CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccce
Confidence 99987554 57899999999999988888766554433333 2222222 223344555555444333
Q ss_pred EEEEccCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCCCccceEeecC--CcccEEEEEEcCCCCcEEEEEec
Q psy4876 411 VALLQNHTQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVPGQHTFSTQPIHSLSR--HQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 411 ~~~~~~h~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~llasggG 487 (609)
......+...+..+.|+|++++++++. .+..+.+|+..++ +.+..... +......+.+...+...+.....
T Consensus 199 ~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (426)
T d1hzua2 199 TVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR------RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH 272 (426)
T ss_dssp EEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT------EEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred eeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccc------cEEEEeccCCcccccceeeeecCCCCceEEecc
Confidence 344456778899999999999877776 4567899999887 44433322 22222334443333333333223
Q ss_pred cCCCeEEEEECCC-------CceeEEEcCCC-CeEEEEEcCCCCeEEEE-----EecCCCeEEEEECCCCceEEEEe---
Q psy4876 488 TADRHIYFWNVSS-------GACLDSIDTKS-QVCALLWNSDYKELVSA-----HGFAQNQLIIWKYPSLVKVAELH--- 551 (609)
Q Consensus 488 s~Dg~I~iwd~~t-------~~~~~~~~~~~-~v~sl~~s~~g~~l~~~-----sG~~dg~I~Iwd~~~~~~~~~l~--- 551 (609)
..|+.+.+|+... ++....+..+. .+..++|+|++++|++. +|..+++|+|||+.+++...++.
T Consensus 273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~ 352 (426)
T d1hzua2 273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA 352 (426)
T ss_dssp TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccc
Confidence 5688888888754 36777787764 78999999999999963 24457899999999988765542
Q ss_pred ------CCCCCEEEEEEeCCCCEEEEE-----ECCCCEEEEEcCCCccch
Q psy4876 552 ------GHSARVLNLAMSPDETTVLSA-----GADETLRLWKIFEKVKSK 590 (609)
Q Consensus 552 ------~h~~~V~~l~~spdg~~L~s~-----s~Dg~I~iWdl~~~~~~~ 590 (609)
.|..+|.+++|||||++|+.+ +.|+.|+|||..+.+...
T Consensus 353 ~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~ 402 (426)
T d1hzua2 353 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA 402 (426)
T ss_dssp HHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEE
T ss_pred hhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEE
Confidence 456789999999999977433 357889999999887543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.86 E-value=6e-20 Score=194.06 Aligned_cols=273 Identities=11% Similarity=0.065 Sum_probs=195.2
Q ss_pred EEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q psy4876 283 LAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLW 362 (609)
Q Consensus 283 la~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iw 362 (609)
++...||.|+|||+.+ ++. +.++.....+..++|+|||++|++++.||.|++|
T Consensus 36 V~~~~dg~v~vwD~~t-------------------------~~~--~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vw 88 (426)
T d1hzua2 36 VTLRDAGQIALVDGDS-------------------------KKI--VKVIDTGYAVHISRMSASGRYLLVIGRDARIDMI 88 (426)
T ss_dssp EEETTTTEEEEEETTT-------------------------CSE--EEEEECCSSEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred EEEcCCCEEEEEECCC-------------------------CcE--EEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEE
Confidence 4455689999999988 554 3455534579999999999999999999999999
Q ss_pred eCCCCeeEEE--ec---CCCCceEEEEe--cCCEE-EEEecCCeEEEEEcCCCCeeEEEEccCCC-----------CeEE
Q psy4876 363 DVSAKKKCRT--MD---GHDVRVGALAW--NTYIL-SSGSRCGNIVHHDVRSRDHKVALLQNHTQ-----------EVCG 423 (609)
Q Consensus 363 d~~~~~~~~~--l~---~h~~~V~~l~~--~~~~L-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-----------~V~~ 423 (609)
|+.+++.... +. +|...+.+++| +|++| +++..++.+.+||..+.. ....+..|.. ....
T Consensus 89 d~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (426)
T d1hzua2 89 DLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDTQTYHPEPRVAA 167 (426)
T ss_dssp ETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSSCCEESCCCEEE
T ss_pred EccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccc-eeEEeeccCCCccceeecCCCceeE
Confidence 9998875433 22 34455555666 57765 555688999999999874 5555555443 3445
Q ss_pred EEEccCCCEEEEEeC-CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc
Q psy4876 424 LKWSPDGRYLASGGN-DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA 502 (609)
Q Consensus 424 l~~spdg~~lasgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~ 502 (609)
+.+++++..++.... .+.+.+++..... ........+...+..+.|+|++..++++. ..+..+.+|+..+++
T Consensus 168 i~~s~d~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~a~--~~~~~~~~~~~~~~~ 240 (426)
T d1hzua2 168 IIASHEHPEFIVNVKETGKVLLVNYKDID-----NLTVTSIGAAPFLADGGWDSSHRYFMTAA--NNSNKVAVIDSKDRR 240 (426)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEECSSSS-----SCEEEEEECCSSEEEEEECTTSCEEEEEE--TTCSEEEEEETTTTE
T ss_pred EEECCCCCEEEEecCCCCeEEEEEecccc-----ceeeEEeccCCccEeeeECCCCcEEEeee--ecccceeeeeccccc
Confidence 566666665554443 3455555555441 22333445777889999999998777766 478999999999999
Q ss_pred eeEEEcCCC---CeEEEEEc-CCCCeEEEEEecCCCeEEEEECCC-------CceEEEEeCCCCCEEEEEEeCCCCEEEE
Q psy4876 503 CLDSIDTKS---QVCALLWN-SDYKELVSAHGFAQNQLIIWKYPS-------LVKVAELHGHSARVLNLAMSPDETTVLS 571 (609)
Q Consensus 503 ~~~~~~~~~---~v~sl~~s-~~g~~l~~~sG~~dg~I~Iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~L~s 571 (609)
.+..+.... ......+. +....+.......++.+.+|+... ++....+.+|...+..++|+|||++|++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v 320 (426)
T d1hzua2 241 LSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYV 320 (426)
T ss_dssp EEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEE
T ss_pred EEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEE
Confidence 988876432 22233333 333344444455788999988654 4778889999999999999999999994
Q ss_pred -------EECCCCEEEEEcCCCccch
Q psy4876 572 -------AGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 572 -------~s~Dg~I~iWdl~~~~~~~ 590 (609)
++.|++|+|||+.+++...
T Consensus 321 ~~~~~~s~~~~~tv~vwd~~t~~~~~ 346 (426)
T d1hzua2 321 DTTFNPDARISQSVAVFDLKNLDAKY 346 (426)
T ss_dssp CCTTCSSHHHHTCEEEEETTCTTSCC
T ss_pred eecCCCCcccCCEEEEEECCCCCcCe
Confidence 5568999999998877543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.85 E-value=4.5e-20 Score=186.36 Aligned_cols=281 Identities=9% Similarity=-0.015 Sum_probs=200.5
Q ss_pred EEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEE
Q psy4876 275 IDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGV 352 (609)
Q Consensus 275 l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Las 352 (609)
+++++++ +++++.++.|.+||+.+ +++.....+.+...+.+++|+|||+++++
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t-------------------------~~~~~t~~~~~~~~p~~l~~spDG~~l~v 56 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVAS-------------------------DTVYKSCVMPDKFGPGTAMMAPDNRTAYV 56 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTT-------------------------TEEEEEEECSSCCSSCEEEECTTSSEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCC-------------------------CCEEEEEEcCCCCCcceEEECCCCCEEEE
Confidence 4677876 66788899999999998 66555555556677899999999998754
Q ss_pred -EeCCCeEEEEeCCCCeeEEEecCCCC------ceEEEEe--cCCEEEEEe------------cCCeEEEEEcCCCCeeE
Q psy4876 353 -GTSLGTVQLWDVSAKKKCRTMDGHDV------RVGALAW--NTYILSSGS------------RCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 353 -gs~dg~I~iwd~~~~~~~~~l~~h~~------~V~~l~~--~~~~L~sgs------------~dg~I~iwd~~~~~~~~ 411 (609)
+..++.|.+||+.+++.+..+..... .+..++| ++.++++++ .++.+.+||..++. ..
T Consensus 57 ~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 135 (346)
T d1jmxb_ 57 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL-EA 135 (346)
T ss_dssp EETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG-GB
T ss_pred EECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccce-ee
Confidence 55789999999999998887764332 3445677 577777664 36778888887653 22
Q ss_pred EEE--ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe---
Q psy4876 412 ALL--QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG--- 486 (609)
Q Consensus 412 ~~~--~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg--- 486 (609)
..+ ......+..+.+++++.+++++ +.+.+|++.++ +.+..+..+. ....+.++|++..+++.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 205 (346)
T d1jmxb_ 136 KPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTG------KYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRH 205 (346)
T ss_dssp CCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTC------CEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTC
T ss_pred eEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCC------CEEEEEecCC-CccceEEeccccEEEEEecCCC
Confidence 111 1123455667788888766543 56899999877 4444443332 2233344444432221110
Q ss_pred --------------------ccCCCeEEEEECCCCceeEEE--cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q psy4876 487 --------------------GTADRHIYFWNVSSGACLDSI--DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL 544 (609)
Q Consensus 487 --------------------Gs~Dg~I~iwd~~t~~~~~~~--~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~ 544 (609)
+..+..+.+||+.++...... .....+..+.+++++.+++... ++.|.+||..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~d~~~~ 282 (346)
T d1jmxb_ 206 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQR 282 (346)
T ss_dssp EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTT
T ss_pred ceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec---CCeEEEEECCCC
Confidence 124567888999888766544 2445788999999999888753 578999999999
Q ss_pred ceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhhh
Q psy4876 545 VKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEIK 595 (609)
Q Consensus 545 ~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~~ 595 (609)
+.+..+. +...+.+++|+|||++|++++.|+.|+|||+.+.+........
T Consensus 283 ~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p 332 (346)
T d1jmxb_ 283 KLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332 (346)
T ss_dssp EEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred cEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence 9888775 4557999999999999999999999999999998887765554
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=1.2e-19 Score=192.48 Aligned_cols=271 Identities=11% Similarity=0.009 Sum_probs=186.0
Q ss_pred EEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q psy4876 283 LAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLW 362 (609)
Q Consensus 283 la~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iw 362 (609)
++.+.+|.|.|||..+ +++.. .+.....+..++|+|||++|++++.||.|++|
T Consensus 36 v~~~d~g~v~v~D~~t-------------------------~~v~~--~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~ 88 (432)
T d1qksa2 36 VTLRDAGQIALIDGST-------------------------YEIKT--VLDTGYAVHISRLSASGRYLFVIGRDGKVNMI 88 (432)
T ss_dssp EEETTTTEEEEEETTT-------------------------CCEEE--EEECSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred EEEcCCCEEEEEECCC-------------------------CcEEE--EEeCCCCeeEEEECCCCCEEEEEcCCCCEEEE
Confidence 4577789999999988 55444 44423569999999999999999999999999
Q ss_pred eCCCCee--EEEec---CCCCceEEEEe--cCCEE-EEEecCCeEEEEEcCCCCeeEEEEcc-----------CCCCeEE
Q psy4876 363 DVSAKKK--CRTMD---GHDVRVGALAW--NTYIL-SSGSRCGNIVHHDVRSRDHKVALLQN-----------HTQEVCG 423 (609)
Q Consensus 363 d~~~~~~--~~~l~---~h~~~V~~l~~--~~~~L-~sgs~dg~I~iwd~~~~~~~~~~~~~-----------h~~~V~~ 423 (609)
|+.+++. +..+. +|...+.+..| +|++| ++++.++.|.+||..+++ .+..+.. +......
T Consensus 89 d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (432)
T d1qksa2 89 DLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAA 167 (432)
T ss_dssp ETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEE
T ss_pred EeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc-ceeeeccCCccccceeccCCCceeE
Confidence 9988753 33333 34444555555 57765 778889999999999874 5555443 3455678
Q ss_pred EEEccCCCEE-EEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc
Q psy4876 424 LKWSPDGRYL-ASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA 502 (609)
Q Consensus 424 l~~spdg~~l-asgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~ 502 (609)
+.++|+|..+ ++...++.|.+||..+.+. ..+..+ .+...+.+++|+|+|.++++++. .+..+.++|..+++
T Consensus 168 v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~----~~~~~i-~~g~~~~~~~~spdg~~~~va~~--~~~~v~v~d~~~~~ 240 (432)
T d1qksa2 168 ILASHYRPEFIVNVKETGKILLVDYTDLNN----LKTTEI-SAERFLHDGGLDGSHRYFITAAN--ARNKLVVIDTKEGK 240 (432)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEETTCSSE----EEEEEE-ECCSSEEEEEECTTSCEEEEEEG--GGTEEEEEETTTTE
T ss_pred EEECCCCCEEEEEEccCCeEEEEEccCCCc----ceEEEE-cccCccccceECCCCCEEEEecc--ccceEEEeecccce
Confidence 8999999876 4556679999999887621 122222 34567889999999987777763 67889999988765
Q ss_pred eeEEEcCC---------------------------------------------CCeEEEEEcCCCCeEEEEEecCCCeEE
Q psy4876 503 CLDSIDTK---------------------------------------------SQVCALLWNSDYKELVSAHGFAQNQLI 537 (609)
Q Consensus 503 ~~~~~~~~---------------------------------------------~~v~sl~~s~~g~~l~~~sG~~dg~I~ 537 (609)
.+..+... ..+....+++++..++++ ..++..+
T Consensus 241 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~--s~p~~~~ 318 (432)
T d1qksa2 241 LVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIK--THPNSQY 318 (432)
T ss_dssp EEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE--CCTTCSE
T ss_pred EEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEE--ecCCccc
Confidence 54333210 124445566666555553 2455555
Q ss_pred EEECCCC------------------------ceEEE--------EeCCCCCEEEEEEeCCCCEEEEEE-----CCCCEEE
Q psy4876 538 IWKYPSL------------------------VKVAE--------LHGHSARVLNLAMSPDETTVLSAG-----ADETLRL 580 (609)
Q Consensus 538 Iwd~~~~------------------------~~~~~--------l~~h~~~V~~l~~spdg~~L~s~s-----~Dg~I~i 580 (609)
+|...+. ..+.. +..|..+|.+++|+|||++|+.+. .||.|+|
T Consensus 319 lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i 398 (432)
T d1qksa2 319 LYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVV 398 (432)
T ss_dssp EEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEE
T ss_pred eeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEE
Confidence 5542211 11111 224677899999999999886553 3688999
Q ss_pred EEcCCCccch
Q psy4876 581 WKIFEKVKSK 590 (609)
Q Consensus 581 Wdl~~~~~~~ 590 (609)
||-.+.+..+
T Consensus 399 ~D~~T~k~~~ 408 (432)
T d1qksa2 399 VDDKTLELKH 408 (432)
T ss_dssp EETTTTEEEE
T ss_pred EECCCceEEe
Confidence 9999987643
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.84 E-value=6.7e-18 Score=167.05 Aligned_cols=242 Identities=13% Similarity=0.077 Sum_probs=187.7
Q ss_pred EEEEEecCCC--eE-EEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHFN--VL-AVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~~--ll-a~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
...++|+|++ ++ +++.++.|++||+.+ +.. +.++.....+..++|++++.
T Consensus 34 p~~va~spdG~~l~v~~~~~~~i~v~d~~t-------------------------~~~--~~~~~~~~~~~~~~~~~~~~ 86 (301)
T d1l0qa2 34 PMGAVISPDGTKVYVANAHSNDVSIIDTAT-------------------------NNV--IATVPAGSSPQGVAVSPDGK 86 (301)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEETTT-------------------------TEE--EEEEECSSSEEEEEECTTSS
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECCC-------------------------Cce--eeeeeccccccccccccccc
Confidence 5679999997 43 345689999999987 443 34444345678999999997
Q ss_pred EEEE-EeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEE-EEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEE
Q psy4876 349 MLGV-GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYIL-SSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGL 424 (609)
Q Consensus 349 ~Las-gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 424 (609)
++++ +..++.+.+|+..+++....+..+ ..+.++.| ++..+ +++..++.+.+|+..+. ..+..+. +...+..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~ 163 (301)
T d1l0qa2 87 QVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-AVINTVS-VGRSPKGI 163 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-CCSSEEEE
T ss_pred cccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeecccc-ceeeecc-cCCCceEE
Confidence 6655 556778999999999988888755 45667777 45554 56667889999999987 3555554 44568889
Q ss_pred EEccCCCEEEEEeCC-CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce
Q psy4876 425 KWSPDGRYLASGGND-NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC 503 (609)
Q Consensus 425 ~~spdg~~lasgs~D-g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~ 503 (609)
+++|++..+++++.+ +.+.+|+.... .....+. ....+..++|++++..+++++.+..++.|++||+.+++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~ 236 (301)
T d1l0qa2 164 AVTPDGTKVYVANFDSMSISVIDTVTN------SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (301)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTT------EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred Eeeccccceeeecccccccccccccce------eeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeE
Confidence 999999988887765 56777777655 4444443 345578899999998887776555678999999999999
Q ss_pred eEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe
Q psy4876 504 LDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH 551 (609)
Q Consensus 504 ~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~ 551 (609)
+..+..+..+..++|+|+|++|+++ +..++.|.|||+.+++.+.++.
T Consensus 237 ~~~~~~~~~~~~va~spdg~~l~va-~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 237 TARIPVGPDPAGIAVTPDGKKVYVA-LSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp EEEEECCSSEEEEEECTTSSEEEEE-ETTTTEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCEEEEEEeCCCCEEEEE-ECCCCeEEEEECCCCeEEEEEe
Confidence 9999988899999999999988765 4478999999999999998885
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=1.9e-18 Score=173.86 Aligned_cols=276 Identities=12% Similarity=0.153 Sum_probs=192.3
Q ss_pred EEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEe-CCCeEEE
Q psy4876 283 LAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGT-SLGTVQL 361 (609)
Q Consensus 283 la~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs-~dg~I~i 361 (609)
++++.|++|+||++... +....+..+++.+.|.+|+|+|||++|++++ .|+.|++
T Consensus 8 v~~~~~~~I~v~~~~~~------------------------~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~ 63 (333)
T d1ri6a_ 8 IASPESQQIHVWNLNHE------------------------GALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA 63 (333)
T ss_dssp EEEGGGTEEEEEEECTT------------------------SCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred EECCCCCcEEEEEEcCC------------------------CCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEE
Confidence 55668999999999762 4455666666889999999999999996655 4899999
Q ss_pred EeCCCCeeEEEe---cCCCCceEEEEe--cCCEEEEEec-CCeEEEEEcCCCCe-eEEEEccCCCCeEEEEEccCCCEEE
Q psy4876 362 WDVSAKKKCRTM---DGHDVRVGALAW--NTYILSSGSR-CGNIVHHDVRSRDH-KVALLQNHTQEVCGLKWSPDGRYLA 434 (609)
Q Consensus 362 wd~~~~~~~~~l---~~h~~~V~~l~~--~~~~L~sgs~-dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spdg~~la 434 (609)
|++........+ ..+...+..++| ++++|++++. ++.|.+|+...... .......+...+.++.++|++++++
T Consensus 64 ~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~ 143 (333)
T d1ri6a_ 64 YRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLW 143 (333)
T ss_dssp EEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEE
T ss_pred EEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeee
Confidence 999765432222 224455677888 5788888774 67899998876532 2233445677888999999999988
Q ss_pred EEeC-CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce----eEEEc-
Q psy4876 435 SGGN-DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC----LDSID- 508 (609)
Q Consensus 435 sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~----~~~~~- 508 (609)
+++. +..|.+|+.........................++|++++..++.+. ...+...+|+...... ...+.
T Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~ 221 (333)
T d1ri6a_ 144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN--ELNSSVDVWELKDPHGNIECVQTLDM 221 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE--TTTTEEEEEESSCTTSCCEEEEEEEC
T ss_pred ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeec--cccCceEEEeecccccceeeeeeeee
Confidence 8775 45799999876532111111111223445568899999987766665 3677888888754321 11221
Q ss_pred ------CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEE---eCCCCCEEEEEEeCCCCEEEEEEC-CCCE
Q psy4876 509 ------TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL---HGHSARVLNLAMSPDETTVLSAGA-DETL 578 (609)
Q Consensus 509 ------~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l---~~h~~~V~~l~~spdg~~L~s~s~-Dg~I 578 (609)
.......+++++++++++.+ +..++.+.+|++........+ ..+...+.+++|+|||++|++++. ++.|
T Consensus 222 ~~~~~~~~~~~~~~~~s~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v 300 (333)
T d1ri6a_ 222 MPENFSDTRWAADIHITPDGRHLYAC-DRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHI 300 (333)
T ss_dssp SCTTCCSCCCEEEEEECTTSSEEEEE-ETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEE
T ss_pred eecCCCccccceeEEEecccCceeee-cccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeE
Confidence 22357788999999988876 457889999988755433332 234466789999999999887765 5899
Q ss_pred EEEEcCC
Q psy4876 579 RLWKIFE 585 (609)
Q Consensus 579 ~iWdl~~ 585 (609)
++|++..
T Consensus 301 ~v~~id~ 307 (333)
T d1ri6a_ 301 SVYEIVG 307 (333)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9997644
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.78 E-value=2.1e-16 Score=162.08 Aligned_cols=279 Identities=7% Similarity=-0.084 Sum_probs=187.1
Q ss_pred eEEEEEecCCC-eEEEE------cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEE
Q psy4876 271 YLNLIDWSHFN-VLAVA------LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAW 343 (609)
Q Consensus 271 ~v~~l~wsp~~-lla~s------~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~ 343 (609)
.+..++++|++ .+.+. ..+.|++||..+ ++... ++. .+....++|
T Consensus 22 p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~t-------------------------g~~~~--~~~-~~~~~~~a~ 73 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGS-------------------------GSILG--HVN-GGFLPNPVA 73 (373)
T ss_pred CccccccCCCCCEEEEEcccccCCCceEEEEECCC-------------------------CCEEE--EEe-CCCCccEEE
Confidence 35668899997 33222 346799999888 55433 343 222337999
Q ss_pred ccCCCEEEEEe----------CCCeEEEEeCCCCeeEEEecCCCCceEEEEe---------cCCEEEEE--ecCCeEEEE
Q psy4876 344 IQEGYMLGVGT----------SLGTVQLWDVSAKKKCRTMDGHDVRVGALAW---------NTYILSSG--SRCGNIVHH 402 (609)
Q Consensus 344 spdg~~Lasgs----------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~---------~~~~L~sg--s~dg~I~iw 402 (609)
+|||++|+++. .++.|.|||..+++.+..+..+......+.. ++..++.. ..++.+.+|
T Consensus 74 SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~ 153 (373)
T d2madh_ 74 AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLV 153 (373)
T ss_pred cCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEe
Confidence 99999999875 3578999999999999888777665544333 34433332 334556666
Q ss_pred EcCCCCeeEEEEccCCCCeEEEEEccCCCE-EEEEeCCCcEEEEeCCCCCCCCCccceEeec------CCcccEEEEEEc
Q psy4876 403 DVRSRDHKVALLQNHTQEVCGLKWSPDGRY-LASGGNDNLLNIWSGVPGQHTFSTQPIHSLS------RHQAAVKAIAWC 475 (609)
Q Consensus 403 d~~~~~~~~~~~~~h~~~V~~l~~spdg~~-lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~------~h~~~V~~l~~s 475 (609)
+..... .. .+.....++.++|+|+. +++.+.|+.+.+||...+. ...... .+......+.+.
T Consensus 154 ~~~~~~-~~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 222 (373)
T d2madh_ 154 VQGGSS-DD----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGA------AGAGLVGAMLTAAQNLLTQPAQAN 222 (373)
T ss_pred eccCCe-EE----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCce------eeEEEeeeccccCccceeeeEEEC
Confidence 665542 22 23345678899999875 4678889999999998773 322222 122233455666
Q ss_pred CCCCcEEEEEeccCCCeEEEEECCCCceeEEEc--C-----------CCCeEEEEEcCCCCeEEEE--------EecCCC
Q psy4876 476 PWSPNVLASGGGTADRHIYFWNVSSGACLDSID--T-----------KSQVCALLWNSDYKELVSA--------HGFAQN 534 (609)
Q Consensus 476 p~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~--~-----------~~~v~sl~~s~~g~~l~~~--------sG~~dg 534 (609)
+++ .+++. +.++.+.+|+...+....... . ......+++++++..++.. ....++
T Consensus 223 ~~~-~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 298 (373)
T d2madh_ 223 KSG-RIVWP---VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK 298 (373)
T ss_pred CCc-eEEEe---cCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCC
Confidence 655 33333 268999999988765432221 1 1234456777777766543 133567
Q ss_pred eEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCE--EEEEECCCCEEEEEcCCCccchhhh
Q psy4876 535 QLIIWKYPSLVKVAELHGHSARVLNLAMSPDETT--VLSAGADETLRLWKIFEKVKSKKKE 593 (609)
Q Consensus 535 ~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~--L~s~s~Dg~I~iWdl~~~~~~~k~~ 593 (609)
.|.+||..+++.+..+. +...+.+++|+|||+. +++++.|++|++||+.+++..+...
T Consensus 299 ~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~ 358 (373)
T d2madh_ 299 EVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV 358 (373)
T ss_pred eEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence 89999999999988775 6677899999999984 4688999999999999988766544
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=5.6e-17 Score=171.62 Aligned_cols=233 Identities=15% Similarity=0.064 Sum_probs=174.8
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCee-EEEE---ccCC
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHK-VALL---QNHT 418 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~-~~~~---~~h~ 418 (609)
++.-++++.+.+|.|.|||..+++.+..+..| ..+..++| ||++|++++.||.|.+||+.+.... +..+ ..|.
T Consensus 30 ~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~ 108 (432)
T d1qksa2 30 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 108 (432)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred CCcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC
Confidence 33345688899999999999999999999877 46899999 6899999999999999999876422 2222 3455
Q ss_pred CCeEEEEEccCCCEE-EEEeCCCcEEEEeCCCCCCCCCccceEeecC-----------CcccEEEEEEcCCCCcEEEEEe
Q psy4876 419 QEVCGLKWSPDGRYL-ASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-----------HQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 419 ~~V~~l~~spdg~~l-asgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-----------h~~~V~~l~~sp~~~~llasgg 486 (609)
+.+.+..|+|||++| ++++.++.|++||..++ +++..+.. +......+.++|++..++++.
T Consensus 109 ~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~- 181 (432)
T d1qksa2 109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV- 181 (432)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTC------CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-
T ss_pred CeEEecccCCCCCEEEEEcCCCCeEEEEeCccc------cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEE-
Confidence 566666788899986 67888999999999988 44444432 345567889999998777776
Q ss_pred ccCCCeEEEEECCCCcee--EEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe-------------
Q psy4876 487 GTADRHIYFWNVSSGACL--DSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH------------- 551 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t~~~~--~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~------------- 551 (609)
..++.|.+||..+++.. ..+.....+..++|+|+|+++++++. .++.+.++|..+++.+..+.
T Consensus 182 -~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~-~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~ 259 (432)
T d1qksa2 182 -KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN-ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN 259 (432)
T ss_dssp -TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG-GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE
T ss_pred -ccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEecc-ccceEEEeecccceEEEEeccCccccccCcccc
Confidence 47899999999987754 45566678899999999999988754 67789999887655443321
Q ss_pred -------------------------------CCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 552 -------------------------------GHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 552 -------------------------------~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
.|...|....++|++..+++++.|.++++|......
T Consensus 260 ~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~ 326 (432)
T d1qksa2 260 FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN 326 (432)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC
T ss_pred eecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC
Confidence 111235556677777777777777777777765433
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.73 E-value=1.3e-16 Score=159.94 Aligned_cols=239 Identities=13% Similarity=0.059 Sum_probs=171.7
Q ss_pred EEEEEecCCC--eE-EEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec----CCCCeEEEEEc
Q psy4876 272 LNLIDWSHFN--VL-AVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE----GNENVCSVAWI 344 (609)
Q Consensus 272 v~~l~wsp~~--ll-a~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----h~~~V~~v~~s 344 (609)
+..++|+||| ++ +++.++.|++||+.+ ++........ +...+..++|+
T Consensus 36 ~~~i~~spDg~~l~v~~~~~~~v~v~D~~t-------------------------~~~~~~~~~~~~~~~~~~~~~v~~s 90 (337)
T d1pbyb_ 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVT-------------------------GETLGRIDLSTPEERVKSLFGAALS 90 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTT-------------------------CCEEEEEECCBTTEEEECTTCEEEC
T ss_pred ccEEEECCCCCEEEEEECCCCeEEEEECCC-------------------------CcEEEEEecCCCcccccceeeEEEc
Confidence 4568999997 33 345689999999998 4443332221 22345689999
Q ss_pred cCCCEEEEEe------------CCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCee
Q psy4876 345 QEGYMLGVGT------------SLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 345 pdg~~Lasgs------------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
|++++++++. .++.+.+||..+++....+.. ...+..++| ++.++++++. .+.+||..+. ..
T Consensus 91 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~-~~ 166 (337)
T d1pbyb_ 91 PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR--DLHVMDPEAG-TL 166 (337)
T ss_dssp TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS--SEEEEETTTT-EE
T ss_pred CCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcC--CcceeeeecC-cE
Confidence 9999998876 357899999999998888874 455777888 5788888764 4778999886 35
Q ss_pred EEEEccCCCCeEEEEEccCCC------------------------EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCc
Q psy4876 411 VALLQNHTQEVCGLKWSPDGR------------------------YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQ 466 (609)
Q Consensus 411 ~~~~~~h~~~V~~l~~spdg~------------------------~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 466 (609)
...+..+... ....+++++. .+..+..++.+.+||...+. .....+..+.
T Consensus 167 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 240 (337)
T d1pbyb_ 167 VEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE-----MAMREVRIMD 240 (337)
T ss_dssp EEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC-----EEEEEEEECS
T ss_pred EEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc-----EEEEEecCCC
Confidence 5555433211 1112222211 11112234568899988773 2333455677
Q ss_pred ccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce
Q psy4876 467 AAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK 546 (609)
Q Consensus 467 ~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~ 546 (609)
..+..+.+++++..+ +. .++.|++||+.+++.+..+.....+.+++|+|+|++|++ +..++.|.|||..+++.
T Consensus 241 ~~~~~~~~~~~~~~~-~~----~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v--~~~~~~i~v~D~~t~~~ 313 (337)
T d1pbyb_ 241 VFYFSTAVNPAKTRA-FG----AYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWL--GGALGDLAAYDAETLEK 313 (337)
T ss_dssp SCEEEEEECTTSSEE-EE----EESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEE--ESBSSEEEEEETTTCCE
T ss_pred cceEEEEecccceEE-EE----ccccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEE--EeCCCcEEEEECCCCcE
Confidence 788899999988544 33 268999999999999999998889999999999999998 45899999999999999
Q ss_pred EEEEeC
Q psy4876 547 VAELHG 552 (609)
Q Consensus 547 ~~~l~~ 552 (609)
+..+..
T Consensus 314 v~~i~~ 319 (337)
T d1pbyb_ 314 KGQVDL 319 (337)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 988864
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.69 E-value=2.4e-15 Score=152.47 Aligned_cols=262 Identities=10% Similarity=0.015 Sum_probs=179.2
Q ss_pred EEEecCCC--eEEE----------EcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec------CC
Q psy4876 274 LIDWSHFN--VLAV----------ALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE------GN 335 (609)
Q Consensus 274 ~l~wsp~~--lla~----------s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------h~ 335 (609)
.++||||+ ++++ ..++.|++||..+ ++........ ..
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t-------------------------~~~~~~~~~~~~~~~~~~ 105 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT-------------------------LLPTADIELPDAPRFLVG 105 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-------------------------CCEEEEEEETTCCCCCBS
T ss_pred ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC-------------------------CCEEEEEecCCcceeecC
Confidence 58999997 3322 3368999999998 4443333221 12
Q ss_pred CCeEEEEEccCCCEEEEEe--CCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGT--SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~ 413 (609)
.....++|+++|++++++. .+..+.+|+..+++.+..+..+.... .........++.+.||...++...........
T Consensus 106 ~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~ 184 (355)
T d2bbkh_ 106 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH-IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT 184 (355)
T ss_dssp CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE-EEEEETTEEEEEETTSCEEEEECCSSSCCEEE
T ss_pred CCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce-EeecCCcceEEEcCCCCEEEEEecCCCeEEEE
Confidence 3345689999999888765 45689999999999988887544322 22224455556667777666655443322111
Q ss_pred E-----ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC----------cccEEEEEEcCCC
Q psy4876 414 L-----QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH----------QAAVKAIAWCPWS 478 (609)
Q Consensus 414 ~-----~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h----------~~~V~~l~~sp~~ 478 (609)
. ..+...+....+.+++..++.++.++.+++|++..+.. ..+.....+ ......+++++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~ 260 (355)
T d2bbkh_ 185 HTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA----KFLPAVEALTEAERADGWRPGGWQQVAYHRAL 260 (355)
T ss_dssp ECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC----EECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred ecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE----EEEeccCCcccceEeeeeeccceEEEEEeCCC
Confidence 1 12344456678888888999999999999999987632 111111111 1223457889998
Q ss_pred CcEEEEEec-------cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe
Q psy4876 479 PNVLASGGG-------TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH 551 (609)
Q Consensus 479 ~~llasggG-------s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~ 551 (609)
..+++.... .....|.+||+.+++.+..+..+..+.+++|+|||+.++.+++..++.|.|||..+++.+..+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~ 340 (355)
T d2bbkh_ 261 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 340 (355)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred CeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence 777665421 1235799999999999999888788999999999997655557789999999999999999998
Q ss_pred CCCCCEEEEEEeCC
Q psy4876 552 GHSARVLNLAMSPD 565 (609)
Q Consensus 552 ~h~~~V~~l~~spd 565 (609)
++......+.+.++
T Consensus 341 ~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 341 QLGHGPQVITTADM 354 (355)
T ss_dssp CCCSSCCEEECCCC
T ss_pred CcCCCccEEEeCCC
Confidence 77655555655444
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.68 E-value=2.9e-15 Score=151.94 Aligned_cols=261 Identities=10% Similarity=0.030 Sum_probs=172.3
Q ss_pred CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEe----------CCC
Q psy4876 288 GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGT----------SLG 357 (609)
Q Consensus 288 dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs----------~dg 357 (609)
++.|++||..+ ++... ++. .+.+..++|+|||++|++.+ .++
T Consensus 27 ~~~v~v~D~~t-------------------------g~~~~--~~~-~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~ 78 (355)
T d2bbkh_ 27 VTQQFVIDGEA-------------------------GRVIG--MID-GGFLPNPVVADDGSFIAHASTVFSRIARGERTD 78 (355)
T ss_dssp SEEEEEEETTT-------------------------TEEEE--EEE-ECSSCEEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred cCeEEEEECCC-------------------------CcEEE--EEE-CCCCCceEEcCCCCEEEEEeCCCccccccCCCC
Confidence 45799999988 55433 332 23344799999999888643 478
Q ss_pred eEEEEeCCCCeeEEEecCCCC-------ceEEEEe--cCCEEEEEe--cCCeEEEEEcCCCCeeEEEEccCCC-------
Q psy4876 358 TVQLWDVSAKKKCRTMDGHDV-------RVGALAW--NTYILSSGS--RCGNIVHHDVRSRDHKVALLQNHTQ------- 419 (609)
Q Consensus 358 ~I~iwd~~~~~~~~~l~~h~~-------~V~~l~~--~~~~L~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~------- 419 (609)
.|++||+.+++.+..+..+.. ....++| ++..++.+. .+..+.+|+..++ ..+..+..+..
T Consensus 79 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 157 (355)
T d2bbkh_ 79 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK-AFKRMLDVPDCYHIFPTA 157 (355)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-EEEEEEECCSEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCC-cEeeEEecCCcceEeecC
Confidence 999999999998887754332 2234566 567666654 4678999999887 35555543332
Q ss_pred CeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEEC
Q psy4876 420 EVCGLKWSPDGRYLASGG-NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~ 498 (609)
....+.+++|+..++... .++.+.+++..... ..+...+....+.+++..++.+ +.++.+++|++
T Consensus 158 ~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~ 223 (355)
T d2bbkh_ 158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----------PEDEFLINHPAYSQKAGRLVWP---TYTGKIHQIDL 223 (355)
T ss_dssp TTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-----------CTTSCBCSCCEEETTTTEEEEE---BTTSEEEEEEC
T ss_pred CcceEEEcCCCCEEEEEecCCCeEEEEeccccc-----------ceecceeeeccccCCCCeEEEe---cCCCeEEEEec
Confidence 223355666665554432 23445555544331 1223334455677766555544 37999999999
Q ss_pred CCCceeE--EEcCC-----------CCeEEEEEcCCCCeEEEEEecC--------CCeEEEEECCCCceEEEEeCCCCCE
Q psy4876 499 SSGACLD--SIDTK-----------SQVCALLWNSDYKELVSAHGFA--------QNQLIIWKYPSLVKVAELHGHSARV 557 (609)
Q Consensus 499 ~t~~~~~--~~~~~-----------~~v~sl~~s~~g~~l~~~sG~~--------dg~I~Iwd~~~~~~~~~l~~h~~~V 557 (609)
..+.... ....+ .....+++++++..++...... .+.|.+||..+++.+..+.. ...+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~ 302 (355)
T d2bbkh_ 224 SSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEI 302 (355)
T ss_dssp TTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEE
T ss_pred CCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCE
Confidence 8776422 11111 1234588999999988764321 25799999999999888763 4568
Q ss_pred EEEEEeCCCC--EEEEEECCCCEEEEEcCCCccchhh
Q psy4876 558 LNLAMSPDET--TVLSAGADETLRLWKIFEKVKSKKK 592 (609)
Q Consensus 558 ~~l~~spdg~--~L~s~s~Dg~I~iWdl~~~~~~~k~ 592 (609)
.+++|+|||+ ++++++.|+.|++||+.+++..+..
T Consensus 303 ~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i 339 (355)
T d2bbkh_ 303 DSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV 339 (355)
T ss_dssp CEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEE
Confidence 8999999998 4566777999999999998876543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.67 E-value=5.7e-16 Score=155.70 Aligned_cols=243 Identities=12% Similarity=0.032 Sum_probs=168.3
Q ss_pred eEEEEEecCCC--eEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-----CCCCeEEEE
Q psy4876 271 YLNLIDWSHFN--VLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-----GNENVCSVA 342 (609)
Q Consensus 271 ~v~~l~wsp~~--lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----h~~~V~~v~ 342 (609)
.+..++|+||+ +++ +..++.|++||+.+ ++........ +...+..++
T Consensus 41 ~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t-------------------------~~~~~~~~~~~~~~~~~~~~~~v~ 95 (346)
T d1jmxb_ 41 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-------------------------CKNTFHANLSSVPGEVGRSMYSFA 95 (346)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTT-------------------------TEEEEEEESCCSTTEEEECSSCEE
T ss_pred CcceEEECCCCCEEEEEECCCCcEEEEeCcc-------------------------CeeeeeecccccccccCCceEEEE
Confidence 35679999997 333 44689999999988 4433222221 123456899
Q ss_pred EccCCCEEEEEe------------CCCeEEEEeCCCCeeEEEecCC--CCceEEEEe--cCCEEEEEecCCeEEEEEcCC
Q psy4876 343 WIQEGYMLGVGT------------SLGTVQLWDVSAKKKCRTMDGH--DVRVGALAW--NTYILSSGSRCGNIVHHDVRS 406 (609)
Q Consensus 343 ~spdg~~Lasgs------------~dg~I~iwd~~~~~~~~~l~~h--~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~ 406 (609)
|+|||++++++. .++.+.+||..+++....+..+ ...+..+.+ ++.++++ ++.+.+|++.+
T Consensus 96 ~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 172 (346)
T d1jmxb_ 96 ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKT 172 (346)
T ss_dssp ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEECTTT
T ss_pred EecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe---CCcceEEEccC
Confidence 999999998765 4677899998877654433322 233444444 3444433 25688999987
Q ss_pred CCeeEEEEccCCCCeEEEEEccCCCE--------------------------EEEEeCCCcEEEEeCCCCCCCCCccceE
Q psy4876 407 RDHKVALLQNHTQEVCGLKWSPDGRY--------------------------LASGGNDNLLNIWSGVPGQHTFSTQPIH 460 (609)
Q Consensus 407 ~~~~~~~~~~h~~~V~~l~~spdg~~--------------------------lasgs~Dg~I~iwd~~~~~~~~~~~~~~ 460 (609)
.. .+..+..+. .+..+.++|++.. ++++..+..+.+||+.++. ....
T Consensus 173 ~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 245 (346)
T d1jmxb_ 173 GK-YTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK-----THTQ 245 (346)
T ss_dssp CC-EEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC-----EEEE
T ss_pred CC-EEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc-----eEEE
Confidence 64 555554332 2333444444432 2333445568888888763 2334
Q ss_pred eecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEE
Q psy4876 461 SLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWK 540 (609)
Q Consensus 461 ~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd 540 (609)
.+..|...+..+.+++++..++... ++.|.+||+.+++.+..+.....+.+++|+|||+++++ +..++.|+|||
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v--~~~d~~v~v~D 319 (346)
T d1jmxb_ 246 EFADLTELYFTGLRSPKDPNQIYGV----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYL--GGTFNDLAVFN 319 (346)
T ss_dssp EEEECSSCEEEEEECSSCTTEEEEE----ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEE--ESBSSEEEEEE
T ss_pred EeecccceeEEEEEeCCCCEEEEec----CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEE--EeCCCcEEEEE
Confidence 4556788899999999987766543 57899999999999999988888999999999999998 45799999999
Q ss_pred CCCCceEEEEeCCC
Q psy4876 541 YPSLVKVAELHGHS 554 (609)
Q Consensus 541 ~~~~~~~~~l~~h~ 554 (609)
..+++.+..+..+.
T Consensus 320 ~~t~~~i~~i~~p~ 333 (346)
T d1jmxb_ 320 PDTLEKVKNIKLPG 333 (346)
T ss_dssp TTTTEEEEEEECSS
T ss_pred CccCCEEEEEECCC
Confidence 99999999987544
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.63 E-value=5.4e-13 Score=136.04 Aligned_cols=257 Identities=10% Similarity=-0.079 Sum_probs=173.9
Q ss_pred EEEecCCC-eEEEE-----------cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecC------C
Q psy4876 274 LIDWSHFN-VLAVA-----------LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEG------N 335 (609)
Q Consensus 274 ~l~wsp~~-lla~s-----------~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h------~ 335 (609)
.++|+||| .++++ .++.|.+||..+ ++......... .
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t-------------------------~~~~~~~~~~~~~~~~~~ 124 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT-------------------------FLPIADIELPDAPRFDVG 124 (373)
T ss_pred cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCC-------------------------CcEEEEEecCCcceeEec
Confidence 48899997 43332 357899999988 44332222211 1
Q ss_pred CCeEEEEEccCCCEEEEEe--CCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cC-CEEEEEecCCeEEEEEcCCCCee
Q psy4876 336 ENVCSVAWIQEGYMLGVGT--SLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NT-YILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~-~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
.....+.|+++++.+++.. .++.+.+|+....+....... ..++.+ ++ ..+++.+.||.+.+|+..... .
T Consensus 125 ~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~-~ 199 (373)
T d2madh_ 125 PYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS----PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGA-A 199 (373)
T ss_pred cCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEecc----ceeEEEecCCCcEEEEEcCCCeEEEEEcCCce-e
Confidence 1234688999998776654 456799999888776555442 345555 44 566788999999999998764 3
Q ss_pred EEEEcc------CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC----------cccEEEEEE
Q psy4876 411 VALLQN------HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH----------QAAVKAIAW 474 (609)
Q Consensus 411 ~~~~~~------h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h----------~~~V~~l~~ 474 (609)
...... +......+.+++++.+ +..+.++.+.+|+...... ..+.....+ ......+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (373)
T d2madh_ 200 GAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGA----TNKAPIDALSGGRKADTWRPGGWQQVAY 274 (373)
T ss_pred eEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeE----EEEEeeccccCcEEeeeeccCcceeeEE
Confidence 333221 2223345566666654 4556788999999887632 111111111 223345666
Q ss_pred cCCCCcEEEEEe-------ccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE
Q psy4876 475 CPWSPNVLASGG-------GTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKV 547 (609)
Q Consensus 475 sp~~~~llasgg-------Gs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~ 547 (609)
++++..++.... +..++.+.+||+.+++.+..+.....+..++|+|||+.++.+++..++.|+|||+.+++.+
T Consensus 275 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~ 354 (373)
T d2madh_ 275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred ecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence 666655443221 1356889999999999999999888999999999999866555778999999999999999
Q ss_pred EEEeCCCCCEEEEEEeCC
Q psy4876 548 AELHGHSARVLNLAMSPD 565 (609)
Q Consensus 548 ~~l~~h~~~V~~l~~spd 565 (609)
..+..+......|++.++
T Consensus 355 ~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 355 QSTVELGSGPQVLSVMNE 372 (373)
T ss_pred EEECCCCCCCcEEEEecC
Confidence 999888777778877543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.57 E-value=3.6e-13 Score=142.92 Aligned_cols=137 Identities=12% Similarity=0.182 Sum_probs=102.8
Q ss_pred EEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeee---ec-CCCCeEEEEEccCCCEE
Q psy4876 275 IDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMD---LE-GNENVCSVAWIQEGYML 350 (609)
Q Consensus 275 l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~-h~~~V~~v~~spdg~~L 350 (609)
+.|.+++-+....|+.|++||+.+ +....+.. +. +...|.++.|||||++|
T Consensus 22 ~~W~~d~~~~~~~~~~~~~~~~~t-------------------------~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i 76 (470)
T d2bgra1 22 LRWISDHEYLYKQENNILVFNAEY-------------------------GNSSVFLENSTFDEFGHSINDYSISPDGQFI 76 (470)
T ss_dssp CEECSSSEEEEESSSCEEEEETTT-------------------------CCEEEEECTTTTTTSSSCCCEEEECTTSSEE
T ss_pred CEeCCCCEEEEEcCCcEEEEECCC-------------------------CCEEEEEchhhhhhccCccceeEECCCCCEE
Confidence 678888755556789999999998 55444332 22 56789999999999999
Q ss_pred EEEeC---------CCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEcc---
Q psy4876 351 GVGTS---------LGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQN--- 416 (609)
Q Consensus 351 asgs~---------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~--- 416 (609)
+.++. ++.+.|||+.+++ +..+..|...+..+.| +|+.|+.. .++.+.+|+...+. .......
T Consensus 77 ~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~-~~~~t~~~~~ 153 (470)
T d2bgra1 77 LLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP-SYRITWTGKE 153 (470)
T ss_dssp EEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC-CEECCSCCBT
T ss_pred EEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCc-eeeeeeccCC
Confidence 98753 5678999999876 4567889999999999 67888875 56789999998764 3322221
Q ss_pred ---------------CCCCeEEEEEccCCCEEEEEeCC
Q psy4876 417 ---------------HTQEVCGLKWSPDGRYLASGGND 439 (609)
Q Consensus 417 ---------------h~~~V~~l~~spdg~~lasgs~D 439 (609)
..+....+.|||||++||+...|
T Consensus 154 ~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN 191 (470)
T ss_dssp TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred CcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence 12334568899999999997654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=8.6e-13 Score=131.67 Aligned_cols=234 Identities=9% Similarity=0.121 Sum_probs=163.7
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEe--cCCCCceEEEEe--cCCEEEEEe-cCCeEEEEEcCCCCeeE--EEEccCCCCe
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTM--DGHDVRVGALAW--NTYILSSGS-RCGNIVHHDVRSRDHKV--ALLQNHTQEV 421 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l--~~h~~~V~~l~~--~~~~L~sgs-~dg~I~iwd~~~~~~~~--~~~~~h~~~V 421 (609)
.++++..|+.|+||++.....+..+ ..|...+..|+| +|++|++++ .|+.|.+|++....... .....+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 3466778999999999765433333 257888999999 577775555 58999999998654222 2223355668
Q ss_pred EEEEEccCCCEEEEEeC-CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 422 CGLKWSPDGRYLASGGN-DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 422 ~~l~~spdg~~lasgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
+.++|+|||++|++++. ++.|.+|+...... ........+...+.++.++|++..+++.. ..+..|.+|+...
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~v~~s~d~~~~~~~~--~~~~~i~~~~~~~ 159 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLP----VGVVDVVEGLDGCHSANISPDNRTLWVPA--LKQDRICLFTVSD 159 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEE----EEEEEEECCCTTBCCCEECTTSSEEEEEE--GGGTEEEEEEECT
T ss_pred eEEEEcCCCCEEeecccCCCceeeeccccccc----eecccccCCCccceEEEeeecceeeeccc--cccceeeEEEecc
Confidence 88999999999998875 67899998776521 22333445667788999999997766665 3678899999876
Q ss_pred CceeEE-------EcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc----eEEEEe------CCCCCEEEEEEe
Q psy4876 501 GACLDS-------IDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV----KVAELH------GHSARVLNLAMS 563 (609)
Q Consensus 501 ~~~~~~-------~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~----~~~~l~------~h~~~V~~l~~s 563 (609)
...... .........++|++++..++.. ....+...+|++.... ....+. ........++++
T Consensus 160 ~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 238 (333)
T d1ri6a_ 160 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV-NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT 238 (333)
T ss_dssp TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE-ETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred CCcceeeeceeeeeecCCCccEEEEeccceeEEee-ccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEe
Confidence 543321 1233567899999999998776 3467788888865332 222221 123457788999
Q ss_pred CCCCEEEEEE-CCCCEEEEEcCCCccc
Q psy4876 564 PDETTVLSAG-ADETLRLWKIFEKVKS 589 (609)
Q Consensus 564 pdg~~L~s~s-~Dg~I~iWdl~~~~~~ 589 (609)
+|+++++.+. .++.+.+|++......
T Consensus 239 ~d~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (333)
T d1ri6a_ 239 PDGRHLYACDRTASLITVFSVSEDGSV 265 (333)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSCC
T ss_pred cccCceeeecccCCeEEEEEEcCCCCE
Confidence 9999776654 5689999999776544
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.52 E-value=2.9e-13 Score=138.82 Aligned_cols=250 Identities=7% Similarity=-0.052 Sum_probs=164.1
Q ss_pred EEEEccCCCEEEEEe----------CCCeEEEEeCCCCeeEEEecCCCC-------ceEEEEe--cCCEEEEEe-cCCeE
Q psy4876 340 SVAWIQEGYMLGVGT----------SLGTVQLWDVSAKKKCRTMDGHDV-------RVGALAW--NTYILSSGS-RCGNI 399 (609)
Q Consensus 340 ~v~~spdg~~Lasgs----------~dg~I~iwd~~~~~~~~~l~~h~~-------~V~~l~~--~~~~L~sgs-~dg~I 399 (609)
.++|+|||+.|++.+ .|+.|.+||..+++.+..+..+.. ....++| ++++|+++. .++.|
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v 148 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence 589999999998865 367899999999998887764332 1234666 677776665 67999
Q ss_pred EEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCC
Q psy4876 400 VHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSP 479 (609)
Q Consensus 400 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 479 (609)
.+||+.+. .....+..+..... +......++..+.||.+.+|++..............+..+...+..+.+.+++
T Consensus 149 ~~~d~~~~-~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g- 223 (368)
T d1mdah_ 149 AGLSVPGA-SDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG- 223 (368)
T ss_dssp EEEEETTT-EEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT-
T ss_pred EEEECCCC-cEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCc-
Confidence 99999987 45666554443221 11233456667778888888876553211111112223344455567777776
Q ss_pred cEEEEEeccCCCeEEEEECCCCceeEEEcCC-------------CCeEEEEEcCCCCeEEEEEecC-------CCeEEEE
Q psy4876 480 NVLASGGGTADRHIYFWNVSSGACLDSIDTK-------------SQVCALLWNSDYKELVSAHGFA-------QNQLIIW 539 (609)
Q Consensus 480 ~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-------------~~v~sl~~s~~g~~l~~~sG~~-------dg~I~Iw 539 (609)
.++.+ .++.+++++...+......... .....+++++++..+++..... ...|.+|
T Consensus 224 ~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~ 299 (368)
T d1mdah_ 224 MLVWA----VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV 299 (368)
T ss_dssp EEEEC----BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred EEEEe----cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEE
Confidence 33332 4667777877765543322110 1234578999998887754222 2469999
Q ss_pred ECCCCceEEEEeCCCCCEEEEEEeCCCC-E-EEEEECCCCEEEEEcCCCccchhhhhhcccc
Q psy4876 540 KYPSLVKVAELHGHSARVLNLAMSPDET-T-VLSAGADETLRLWKIFEKVKSKKKEIKNNAS 599 (609)
Q Consensus 540 d~~~~~~~~~l~~h~~~V~~l~~spdg~-~-L~s~s~Dg~I~iWdl~~~~~~~k~~~~~~~~ 599 (609)
|..+++.+..+. +...+.+++|+|||+ + ++++..|+.|++||..+++..+....-...+
T Consensus 300 D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~ 360 (368)
T d1mdah_ 300 TASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPE 360 (368)
T ss_dssp ESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCC
T ss_pred ECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCC
Confidence 999999888775 345688999999997 3 4566778999999999998776655433333
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.50 E-value=6.3e-13 Score=136.24 Aligned_cols=250 Identities=10% Similarity=-0.063 Sum_probs=169.1
Q ss_pred EEEEecCCC-eEEEE-----------cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec------C
Q psy4876 273 NLIDWSHFN-VLAVA-----------LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE------G 334 (609)
Q Consensus 273 ~~l~wsp~~-lla~s-----------~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------h 334 (609)
..++|+||+ .++++ .|+.|.+||..+ ++......+. .
T Consensus 68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t-------------------------~~~~~~i~~p~~~~~~~ 122 (368)
T d1mdah_ 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-------------------------FLPIADIELPDAPRFSV 122 (368)
T ss_dssp CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-------------------------CCEEEEEEETTSCSCCB
T ss_pred CcceECCCCCEEEEEcccCccccccccCCeEEEEECCC-------------------------CcEeeeecCCccceecc
Confidence 348899997 44432 256799999988 4433333222 1
Q ss_pred CCCeEEEEEccCCCEEEEEe-CCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEE
Q psy4876 335 NENVCSVAWIQEGYMLGVGT-SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs-~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~ 413 (609)
......++|+|||++|+++. .++.|.+||+.+++.+..+..+..... .......++..+.||.+.++++.........
T Consensus 123 g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~ 201 (368)
T d1mdah_ 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI-HPGAAATHYLGSCPASLAASDLAAAPAAAGI 201 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC-EEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred cCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE-ccCCCceEEEEcCCCCEEEEEecCCceeeee
Confidence 12234689999999998876 568999999999999988876554322 1224567788889999999998765432222
Q ss_pred -----EccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC----------CcccEEEEEEcCCC
Q psy4876 414 -----LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR----------HQAAVKAIAWCPWS 478 (609)
Q Consensus 414 -----~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~----------h~~~V~~l~~sp~~ 478 (609)
...+...+..+.+.+++..+.+. ++.+++++...... ..+..... .......+++++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 275 (368)
T d1mdah_ 202 VGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGA----TMKAAIDGNESGRKADNFRSAGFQMVAKLKNT 275 (368)
T ss_dssp CCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCC----EEECCCCSSCTHHHHTTEEECSSSCEEEETTT
T ss_pred eecccccccccceeecccccCcEEEEec--CCCEEEEeecCCce----EEEeecccccceeeeeeecCCCceeEEEcCCC
Confidence 22344555677888888666544 45667777665421 11111111 11122357889988
Q ss_pred CcEEEEEec------cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC
Q psy4876 479 PNVLASGGG------TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 479 ~~llasggG------s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~ 552 (609)
..+++...+ .....|.+||..+++.+..+.....+.+++|+|||+.++.+++..++.|+|||..+++.+..+..
T Consensus 276 ~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~ 355 (368)
T d1mdah_ 276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred CEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence 776665421 11246999999999999888877789999999999865555566899999999999999998875
Q ss_pred CC
Q psy4876 553 HS 554 (609)
Q Consensus 553 h~ 554 (609)
..
T Consensus 356 g~ 357 (368)
T d1mdah_ 356 DK 357 (368)
T ss_dssp CS
T ss_pred CC
Confidence 43
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.43 E-value=1.6e-12 Score=135.18 Aligned_cols=292 Identities=10% Similarity=0.027 Sum_probs=188.4
Q ss_pred CCccCCceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccc---cceeeeeeec-CCCCe
Q psy4876 263 APEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDN---RAIDHLMDLE-GNENV 338 (609)
Q Consensus 263 ap~~~~~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~-h~~~V 338 (609)
+|+-.|++|+ +++++.+|.|.+|++.+....+++..|+|++...+..-.... .......... |.-..
T Consensus 4 ~pG~~De~y~---------f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~ 74 (441)
T d1qnia2 4 APGELDEYYG---------FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHI 74 (441)
T ss_dssp CTTCCCSEEE---------EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEE
T ss_pred CCCCCCCEEE---------EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCc
Confidence 4555666662 356778999999999987777777788887765543211000 0000011111 44456
Q ss_pred EEEEEccCCCEEEEEe-CCCeEEEEeCCCCeeEEEec-CCCCceEEEEe--cCC--EEEEEecCC---------------
Q psy4876 339 CSVAWIQEGYMLGVGT-SLGTVQLWDVSAKKKCRTMD-GHDVRVGALAW--NTY--ILSSGSRCG--------------- 397 (609)
Q Consensus 339 ~~v~~spdg~~Lasgs-~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~--~~~--~L~sgs~dg--------------- 397 (609)
.....+|||++|++.. .+..|.++|+.+++....+. .+...+..++| +++ +++..+.+.
T Consensus 75 s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~ 154 (441)
T d1qnia2 75 SMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNS 154 (441)
T ss_dssp EEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGE
T ss_pred ceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccc
Confidence 6666789999987664 67899999999998888765 35677888888 455 555544432
Q ss_pred --eEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCC-----------------------------------
Q psy4876 398 --NIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDN----------------------------------- 440 (609)
Q Consensus 398 --~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg----------------------------------- 440 (609)
.+..+|..+.. ....+.. .+.+..+.|+|+|+++++.+.+.
T Consensus 155 ~~~~~~iD~~t~~-v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~ 232 (441)
T d1qnia2 155 YTMFTAIDAETMD-VAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFK 232 (441)
T ss_dssp EEEEEEEETTTCS-EEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCB
T ss_pred cceEEeecCccce-eeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEE
Confidence 23457777664 3333332 24577899999999988876532
Q ss_pred ------cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce-----------
Q psy4876 441 ------LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC----------- 503 (609)
Q Consensus 441 ------~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~----------- 503 (609)
.+.|++.... ..+..+..+.. ...+.++|||+++++++ ..+++|.+||+.+...
T Consensus 233 ~v~~~~v~vvd~~~~~------~v~~~IPvgks-PhGv~vSPDGkyl~~~~--~~~~tvsv~d~~k~~~~~~~~~~~~~~ 303 (441)
T d1qnia2 233 TIGDSKVPVVDGRGES------EFTRYIPVPKN-PHGLNTSPDGKYFIANG--KLSPTVSVIAIDKLDDLFEDKIELRDT 303 (441)
T ss_dssp CCTTCCCCEEECSSSC------SSEEEECCBSS-CCCEEECTTSCEEEEEC--TTSSBEEEEEGGGHHHHTTTSSCGGGG
T ss_pred EeCCCCcEEEEcccCC------ceEEEEeCCCC-ccCceECCCCCEEEEeC--CcCCcEEEEEeehhhhHhhccCCcceE
Confidence 2233332222 34445544444 46799999998888886 4899999999864221
Q ss_pred e-EEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC---------C-CceEEEE-----eCCCCCEEEEEEeCCCC
Q psy4876 504 L-DSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYP---------S-LVKVAEL-----HGHSARVLNLAMSPDET 567 (609)
Q Consensus 504 ~-~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~---------~-~~~~~~l-----~~h~~~V~~l~~spdg~ 567 (609)
+ ...+..-.....+|+++|..+.+ .+-|.+|..|++. . ...+..+ .||...+.+.+++|||+
T Consensus 304 ~~~~~~~glgplh~~fd~~g~~yts--~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk 381 (441)
T d1qnia2 304 IVAEPELGLGPLHTTFDGRGNAYTT--LFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGK 381 (441)
T ss_dssp EEECCBCCSCEEEEEECSSSEEEEE--ETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCC
T ss_pred EEeecccccCcccceecCCceEEEc--ccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCc
Confidence 1 11112224566789998865444 6789999999973 1 1233334 46777777788999999
Q ss_pred EEEEE---ECCC
Q psy4876 568 TVLSA---GADE 576 (609)
Q Consensus 568 ~L~s~---s~Dg 576 (609)
+|+++ +.|.
T Consensus 382 ~l~s~~k~s~dr 393 (441)
T d1qnia2 382 WLVVLSKFSKDR 393 (441)
T ss_dssp EEEEEESCCGGG
T ss_pred EEEecCcccccc
Confidence 99999 5554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.21 E-value=3.1e-09 Score=108.58 Aligned_cols=258 Identities=10% Similarity=0.048 Sum_probs=151.1
Q ss_pred cceeeeee--ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC-eeEEEec-CCCCceEEEEe--cCCE--EEEEe-
Q psy4876 324 RAIDHLMD--LEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAK-KKCRTMD-GHDVRVGALAW--NTYI--LSSGS- 394 (609)
Q Consensus 324 ~~~~~l~~--~~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~-~~~~~l~-~h~~~V~~l~~--~~~~--L~sgs- 394 (609)
+.+..+.. +.....+..|+|++++++|+++.. +.+..|.+... ....... ........+.+ ++.. +++..
T Consensus 26 ~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~ 104 (365)
T d1jofa_ 26 LTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQ 104 (365)
T ss_dssp TEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSS
T ss_pred CeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecC
Confidence 44444433 225566778999999999988765 56778876532 2222111 11122223333 3332 22221
Q ss_pred cCCeEEEEEcCC------------CCee---E-EEEccCCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCCCCCCcc
Q psy4876 395 RCGNIVHHDVRS------------RDHK---V-ALLQNHTQEVCGLKWSPDGRYLASGGN-DNLLNIWSGVPGQHTFSTQ 457 (609)
Q Consensus 395 ~dg~I~iwd~~~------------~~~~---~-~~~~~h~~~V~~l~~spdg~~lasgs~-Dg~I~iwd~~~~~~~~~~~ 457 (609)
..+.|..+.+.. .... . .........+.++.|+|||+++++++. ...|.+|+....... .
T Consensus 105 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~---~ 181 (365)
T d1jofa_ 105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV---E 181 (365)
T ss_dssp TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE---E
T ss_pred CCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCce---e
Confidence 234444443321 1101 1 111123345789999999998888765 357888876543111 1
Q ss_pred ceEee--cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee--EE---EcC---------------CCCeEE
Q psy4876 458 PIHSL--SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL--DS---IDT---------------KSQVCA 515 (609)
Q Consensus 458 ~~~~~--~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~--~~---~~~---------------~~~v~s 515 (609)
..... .........++|+|+++.++++. ..++.|.+|++..+... .. +.. ......
T Consensus 182 ~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~--e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (365)
T d1jofa_ 182 LVGSVDAPDPGDHPRWVAMHPTGNYLYALM--EAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADV 259 (365)
T ss_dssp EEEEEECSSTTCCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEE
T ss_pred eccceeecCCCCceEEEEECCCCceEEEec--cCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccc
Confidence 11111 12345678999999998787776 47899999999765432 11 110 113567
Q ss_pred EEEcCCCCeEEEEEecCC----CeEEEEECCCCceEEE---E---eCCCCCEEEEEEeC-CCCEEEEEE-CCCCEEEEEc
Q psy4876 516 LLWNSDYKELVSAHGFAQ----NQLIIWKYPSLVKVAE---L---HGHSARVLNLAMSP-DETTVLSAG-ADETLRLWKI 583 (609)
Q Consensus 516 l~~s~~g~~l~~~sG~~d----g~I~Iwd~~~~~~~~~---l---~~h~~~V~~l~~sp-dg~~L~s~s-~Dg~I~iWdl 583 (609)
+.++|+|++|+++....+ ..|..|++.....+.. + ........+++++| +|++|+++. .++.|.+|++
T Consensus 260 i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~ 339 (365)
T d1jofa_ 260 CALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp EEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred eEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence 899999999988653222 2477777654332221 1 12334567899998 899887774 5789999998
Q ss_pred CCCc
Q psy4876 584 FEKV 587 (609)
Q Consensus 584 ~~~~ 587 (609)
....
T Consensus 340 ~~~~ 343 (365)
T d1jofa_ 340 KDEF 343 (365)
T ss_dssp ETTE
T ss_pred eCCc
Confidence 7654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.18 E-value=1.8e-09 Score=111.93 Aligned_cols=226 Identities=9% Similarity=0.030 Sum_probs=157.3
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEecC------------------------------CCCceEEE--EecCCEEEEE-ecC
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCRTMDG------------------------------HDVRVGAL--AWNTYILSSG-SRC 396 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~~l~~------------------------------h~~~V~~l--~~~~~~L~sg-s~d 396 (609)
+++|+.+|.|+||++.+++.++.+.. |....... ..||++|++. ..+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 55677899999999999998887642 11222222 2367777555 467
Q ss_pred CeEEEEEcCCCCeeEEEE-ccCCCCeEEEEEccCCC--EEEEEeCCC-----------------cEEEEeCCCCCCCCCc
Q psy4876 397 GNIVHHDVRSRDHKVALL-QNHTQEVCGLKWSPDGR--YLASGGNDN-----------------LLNIWSGVPGQHTFST 456 (609)
Q Consensus 397 g~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~spdg~--~lasgs~Dg-----------------~I~iwd~~~~~~~~~~ 456 (609)
..|.++|+++.. ....+ ..+...+.+++|+|+|+ |++..+.+. .+..+|..+.
T Consensus 94 ~rVavIDl~t~k-~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~------ 166 (441)
T d1qnia2 94 TRVARIRLDIMK-TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM------ 166 (441)
T ss_dssp TEEEEEETTTTE-EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC------
T ss_pred CEEEEEECCCCc-EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc------
Confidence 899999999874 44444 34678899999999998 555544432 2345777765
Q ss_pred cceEeecCCcccEEEEEEcCCCCcEEEEEeccC--------------------------------------CCeEEEEEC
Q psy4876 457 QPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA--------------------------------------DRHIYFWNV 498 (609)
Q Consensus 457 ~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~--------------------------------------Dg~I~iwd~ 498 (609)
....++... .....+.|+|+|+++++++.++. ++.+.+++.
T Consensus 167 ~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~ 245 (441)
T d1qnia2 167 DVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGR 245 (441)
T ss_dssp SEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECS
T ss_pred eeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcc
Confidence 344444332 34678999999988887763211 345566666
Q ss_pred CCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce-----------EEEEeCCCCCEEEEEEeCCCC
Q psy4876 499 SSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK-----------VAELHGHSARVLNLAMSPDET 567 (609)
Q Consensus 499 ~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~-----------~~~l~~h~~~V~~l~~spdg~ 567 (609)
...+.+..+..+.....+.++|||++++++ |..+++|.|||+.+... +.-.....-.....+|.++|.
T Consensus 246 ~~~~v~~~IPvgksPhGv~vSPDGkyl~~~-~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~ 324 (441)
T d1qnia2 246 GESEFTRYIPVPKNPHGLNTSPDGKYFIAN-GKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN 324 (441)
T ss_dssp SSCSSEEEECCBSSCCCEEECTTSCEEEEE-CTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSE
T ss_pred cCCceEEEEeCCCCccCceECCCCCEEEEe-CCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCce
Confidence 666677777777778899999999999876 67899999999864321 111111122357789999999
Q ss_pred EEEEEECCCCEEEEEcC
Q psy4876 568 TVLSAGADETLRLWKIF 584 (609)
Q Consensus 568 ~L~s~s~Dg~I~iWdl~ 584 (609)
.+.+...|..|..|++.
T Consensus 325 ~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 325 AYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp EEEEETTTTEEEEEEHH
T ss_pred EEEcccccceEEEeccc
Confidence 88899999999999984
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=1.1e-07 Score=91.23 Aligned_cols=230 Identities=13% Similarity=0.079 Sum_probs=146.9
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCC---eEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEe-cCC
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLG---TVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGS-RCG 397 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg---~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs-~dg 397 (609)
.....+.. +...+.+.+|||||+.||...... .+.+.+...+.. ..+..+........| ++..++... .++
T Consensus 29 ~~~~~l~~--~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~ 105 (269)
T d2hqsa1 29 YNQFVVHR--SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTG 105 (269)
T ss_dssp CSCEEEEE--ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred CCcEEEec--CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCC
Confidence 55555544 457788999999999999875543 466777766544 444557777888888 466665544 344
Q ss_pred eEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEe-CCC--cEEEEeCCCCCCCCCccceEeecCCcccEEEEEE
Q psy4876 398 NIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGG-NDN--LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAW 474 (609)
Q Consensus 398 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs-~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 474 (609)
...++.......................+++++..++..+ .++ .|.+.++..+ ....+..+........|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~ 178 (269)
T d2hqsa1 106 SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG-------APQRITWEGSQNQDADV 178 (269)
T ss_dssp SCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS-------CCEECCCSSSEEEEEEE
T ss_pred ccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccc-------cceeeeccccccccccc
Confidence 3333333322223444444555566667888777655544 444 4555666554 23344456667788899
Q ss_pred cCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceEEEEeCC
Q psy4876 475 CPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGF-AQNQLIIWKYPSLVKVAELHGH 553 (609)
Q Consensus 475 sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~-~dg~I~Iwd~~~~~~~~~l~~h 553 (609)
+|++..++..........|.+.|...+.. ..+..........|+|||+.|+..+.. ....|+++++..+.. ..+...
T Consensus 179 spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~ 256 (269)
T d2hqsa1 179 SSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPAT 256 (269)
T ss_dssp CTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCS
T ss_pred ccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCC
Confidence 99998888776422334555566655543 444445567788999999999876532 245688999876654 456666
Q ss_pred CCCEEEEEEeCC
Q psy4876 554 SARVLNLAMSPD 565 (609)
Q Consensus 554 ~~~V~~l~~spd 565 (609)
.+.+...+|||-
T Consensus 257 ~g~~~~p~WSP~ 268 (269)
T d2hqsa1 257 DGQVKFPAWSPY 268 (269)
T ss_dssp SSEEEEEEECCC
T ss_pred CCcEEeEEeCCC
Confidence 778889999983
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.11 E-value=1e-09 Score=115.59 Aligned_cols=136 Identities=13% Similarity=0.119 Sum_probs=103.5
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecC-----CCCceEEEEe--cCCEEEEEec---------CCeEEEE
Q psy4876 339 CSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDG-----HDVRVGALAW--NTYILSSGSR---------CGNIVHH 402 (609)
Q Consensus 339 ~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~-----h~~~V~~l~~--~~~~L~sgs~---------dg~I~iw 402 (609)
..+.|.+++.+++ ..++.|.+||+.+++....+.. |...|.++.| |++.|+.++. ++.+.+|
T Consensus 20 ~~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~ 97 (470)
T d2bgra1 20 YSLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (470)
T ss_dssp CCCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred cCCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence 3588999998876 4578899999999988776654 4577999999 6888887753 5788999
Q ss_pred EcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC------------------
Q psy4876 403 DVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR------------------ 464 (609)
Q Consensus 403 d~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~------------------ 464 (609)
|+.++ .+..+..|...+..+.|||||++||... ++.+++|+..++. .......
T Consensus 98 d~~~~--~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~------~~~~t~~~~~~~~~~g~~d~~~~~~ 168 (470)
T d2bgra1 98 DLNKR--QLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLP------SYRITWTGKEDIIYNGITDWVYEEE 168 (470)
T ss_dssp ETTTT--EECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSC------CEECCSCCBTTTEEESBCCHHHHHH
T ss_pred ECCCC--cccccccCCccccccccccCcceeeEee-cccceEEECCCCc------eeeeeeccCCCcccccccceeeeee
Confidence 99986 3566788899999999999999999965 5789999998873 2221111
Q ss_pred CcccEEEEEEcCCCCcEEEEE
Q psy4876 465 HQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 465 h~~~V~~l~~sp~~~~llasg 485 (609)
..+....+.|+|||+.++...
T Consensus 169 ~~~~~~~~~wSPDGk~ia~~~ 189 (470)
T d2bgra1 169 VFSAYSALWWSPNGTFLAYAQ 189 (470)
T ss_dssp TSSSSBCEEECTTSSEEEEEE
T ss_pred ecCCccccEECCCCCccceeE
Confidence 123345688999998766543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.06 E-value=2.7e-07 Score=89.91 Aligned_cols=235 Identities=16% Similarity=0.156 Sum_probs=163.8
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCC------CCceEEEEe--c-CCEEEEE-ecCCeEEEEEcCC
Q psy4876 337 NVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGH------DVRVGALAW--N-TYILSSG-SRCGNIVHHDVRS 406 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h------~~~V~~l~~--~-~~~L~sg-s~dg~I~iwd~~~ 406 (609)
....|+++++|+.+++-..+..|++||.+ ++.+..+... ...-..+++ + +..+++. +.++.|..++...
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 102 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG 102 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence 46899999999988877778899999965 6777766421 112344554 2 3344333 3455777777653
Q ss_pred CCeeEEEE-ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee--cCCcccEEEEEEcCCCCcEEE
Q psy4876 407 RDHKVALL-QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL--SRHQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 407 ~~~~~~~~-~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~lla 483 (609)
.....+ ........++++.++|.++++....+.+.+++... ..+..+ ..+......+++.+++ .+++
T Consensus 103 --~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-------~~~~~~g~~~~~~~~~~i~~d~~g-~i~v 172 (279)
T d1q7fa_ 103 --QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-------NVLHKFGCSKHLEFPNGVVVNDKQ-EIFI 172 (279)
T ss_dssp --CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-------CEEEEEECTTTCSSEEEEEECSSS-EEEE
T ss_pred --cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-------ceeecccccccccccceeeeccce-eEEe
Confidence 234444 23456678999999999888877778888888653 344443 3455677889999987 5666
Q ss_pred EEeccCCCeEEEEECCCCceeEEEcCC---CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC--CCCCEE
Q psy4876 484 SGGGTADRHIYFWNVSSGACLDSIDTK---SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG--HSARVL 558 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t~~~~~~~~~~---~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~--h~~~V~ 558 (609)
+. ...+.|++||. +|+.+..+... .....|++.++|+.+++- ...+..|.+|+ ++++.+..+.. ......
T Consensus 173 ~d--~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad-~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~ 247 (279)
T d1q7fa_ 173 SD--NRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIAD-NHNNFNLTIFT-QDGQLISALESKVKHAQCF 247 (279)
T ss_dssp EE--GGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEE-CSSSCEEEEEC-TTSCEEEEEEESSCCSCEE
T ss_pred ee--ccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEE-CCCCcEEEEEC-CCCCEEEEEeCCCCCCCEe
Confidence 65 36789999996 46777777533 357899999999866552 23455799998 56877766643 334688
Q ss_pred EEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 559 NLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 559 ~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
.|++.+||.+++ ++.++.|++|+.....+
T Consensus 248 ~vav~~dG~l~V-~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 248 DVALMDDGSVVL-ASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp EEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred EEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence 999999997554 56889999999887543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.02 E-value=4.7e-08 Score=96.63 Aligned_cols=239 Identities=12% Similarity=0.063 Sum_probs=160.2
Q ss_pred eeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcC
Q psy4876 328 HLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVR 405 (609)
Q Consensus 328 ~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~ 405 (609)
.+..+.....+..++++|||+++++...++.|..|+... + ...+......+.+++| +++++++...++.+..|+..
T Consensus 20 v~~~~p~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~ 97 (302)
T d2p4oa1 20 IITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV 97 (302)
T ss_dssp EEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred EEEECCCCCCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence 345555445688999999999999999999999888654 3 3344456678899999 67888888888888888876
Q ss_pred CCCeeEEEE--ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCC--c--cceEeecCCcccEEEEEEcCCCC
Q psy4876 406 SRDHKVALL--QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS--T--QPIHSLSRHQAAVKAIAWCPWSP 479 (609)
Q Consensus 406 ~~~~~~~~~--~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~--~--~~~~~~~~h~~~V~~l~~sp~~~ 479 (609)
........+ .........+++.++|+++++.+.++.|..+|...+..... . ...............+.+.. .
T Consensus 98 ~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~ 175 (302)
T d2p4oa1 98 KSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--N 175 (302)
T ss_dssp CTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--T
T ss_pred ccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--C
Confidence 543333332 23456688999999999998888889999998876521000 0 00000111223455666653 4
Q ss_pred cEEEEEeccCCCeEEEEECCCCcee---EEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE--EEEeCCC
Q psy4876 480 NVLASGGGTADRHIYFWNVSSGACL---DSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKV--AELHGHS 554 (609)
Q Consensus 480 ~llasggGs~Dg~I~iwd~~t~~~~---~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~--~~l~~h~ 554 (609)
.++++. +..+.|+.+++...... ..+........+++.++|.++++ ...++.|..++.. ++.. ......-
T Consensus 176 ~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va--~~~~~~V~~i~p~-G~~~~~~~~~~~~ 250 (302)
T d2p4oa1 176 FLYVSN--TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA--THIYNSVVRIAPD-RSTTIIAQAEQGV 250 (302)
T ss_dssp EEEEEE--TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE--CBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred ceeeec--CCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEE--EcCCCcEEEECCC-CCEEEEEecCCCC
Confidence 566665 47899999988754322 22223445678999999987666 3468889999765 3332 2223344
Q ss_pred CCEEEEEE---eCCCCEEEEEECC
Q psy4876 555 ARVLNLAM---SPDETTVLSAGAD 575 (609)
Q Consensus 555 ~~V~~l~~---spdg~~L~s~s~D 575 (609)
...++++| ++|++.|+.++..
T Consensus 251 ~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 251 IGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCceEEEEcCCCCCCCEEEEECCC
Confidence 56899999 6788888776554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.99 E-value=1.6e-07 Score=93.40 Aligned_cols=238 Identities=9% Similarity=0.081 Sum_probs=155.4
Q ss_pred CCeEEEEEccCCCEEEEEeC-------CCeEEEEeCCCCeeEEEecCC----CCceEEEEec--CCEEEEEecCCeEEEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTS-------LGTVQLWDVSAKKKCRTMDGH----DVRVGALAWN--TYILSSGSRCGNIVHH 402 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~-------dg~I~iwd~~~~~~~~~l~~h----~~~V~~l~~~--~~~L~sgs~dg~I~iw 402 (609)
.....++|.++|+++++... +|.|..||..++......... ...-..+.|+ ++.|+++.....|..+
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence 44667899999987776433 467999998887654433221 2235678884 6778888777778888
Q ss_pred EcCCCCeeEEEEcc-CC----CCeEEEEEccCCCEEEEEeC---------------CCcEEEEeCCCCCCCCCccceEee
Q psy4876 403 DVRSRDHKVALLQN-HT----QEVCGLKWSPDGRYLASGGN---------------DNLLNIWSGVPGQHTFSTQPIHSL 462 (609)
Q Consensus 403 d~~~~~~~~~~~~~-h~----~~V~~l~~spdg~~lasgs~---------------Dg~I~iwd~~~~~~~~~~~~~~~~ 462 (609)
+..... ...+.. .. ...+.+++.++|++.++-.. +|.|+.++... . ...+
T Consensus 98 ~~~g~~--~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-------~-~~~~ 167 (314)
T d1pjxa_ 98 QTDGTF--EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-------Q-MIQV 167 (314)
T ss_dssp ETTSCE--EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-------C-EEEE
T ss_pred eCCCcE--EEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-------c-eeEe
Confidence 887542 222211 11 13577999999988776432 23455554432 1 1222
Q ss_pred cCCcccEEEEEEcCCCC----cEEEEEeccCCCeEEEEECCCCceeE------EEcC--CCCeEEEEEcCCCCeEEEEEe
Q psy4876 463 SRHQAAVKAIAWCPWSP----NVLASGGGTADRHIYFWNVSSGACLD------SIDT--KSQVCALLWNSDYKELVSAHG 530 (609)
Q Consensus 463 ~~h~~~V~~l~~sp~~~----~llasggGs~Dg~I~iwd~~t~~~~~------~~~~--~~~v~sl~~s~~g~~l~~~sG 530 (609)
......-..++|+|++. .|+++. +..+.|..||+.....+. .+.. ......+++..+|+..++..
T Consensus 168 ~~~~~~pNGi~~~~d~d~~~~~lyv~d--~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~- 244 (314)
T d1pjxa_ 168 DTAFQFPNGIAVRHMNDGRPYQLIVAE--TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW- 244 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEE--TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE-
T ss_pred eCCcceeeeeEECCCCCcceeEEEEEe--ecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEc-
Confidence 22233446889998764 355554 478999999876433222 1111 12456899999999877643
Q ss_pred cCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEE-EEEECCCCEEEEEcCCCc
Q psy4876 531 FAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTV-LSAGADETLRLWKIFEKV 587 (609)
Q Consensus 531 ~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L-~s~s~Dg~I~iWdl~~~~ 587 (609)
..+.|.+||...+..+..+......+++++|.||++.| ++.+.+|.|...++....
T Consensus 245 -~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 245 -GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp -TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred -CCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence 68999999988887777777777789999999999855 555667878777765543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.98 E-value=6.5e-07 Score=89.00 Aligned_cols=237 Identities=10% Similarity=0.110 Sum_probs=157.1
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEec----CCeEEEEEcCCCC
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSR----CGNIVHHDVRSRD 408 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~----dg~I~iwd~~~~~ 408 (609)
...+..++|.++|++.++-..++.|..|+...++....+.........+++ ++.++++... .+.|...+.....
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN 118 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence 345678999999997777778899999998887666666566677888998 4677666543 2345555555432
Q ss_pred eeEEEEcc--CCCCeEEEEEccCCCEEEEEeC------CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCc
Q psy4876 409 HKVALLQN--HTQEVCGLKWSPDGRYLASGGN------DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPN 480 (609)
Q Consensus 409 ~~~~~~~~--h~~~V~~l~~spdg~~lasgs~------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 480 (609)
....... -...+..+++.++|++.++... .+.+..++.... .+..+...-.....|+|+|+++.
T Consensus 119 -~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-------~~~~~~~~~~~pnGia~s~dg~~ 190 (319)
T d2dg1a1 119 -LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-------TVTPIIQNISVANGIALSTDEKV 190 (319)
T ss_dssp -CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-------CEEEEEEEESSEEEEEECTTSSE
T ss_pred -eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-------eeEEEeeccceeeeeeeccccce
Confidence 2222221 1235778999999987766432 133665655432 33333333345678999999987
Q ss_pred EEEEEeccCCCeEEEEECCCC-ceeEEE--------cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe
Q psy4876 481 VLASGGGTADRHIYFWNVSSG-ACLDSI--------DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH 551 (609)
Q Consensus 481 llasggGs~Dg~I~iwd~~t~-~~~~~~--------~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~ 551 (609)
++++- +..+.|+.||+... ...... ........+++..+|+..++.. ..+.|.+|+ +.++.+..+.
T Consensus 191 lyvad--~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~--~~g~V~~~~-p~G~~l~~i~ 265 (319)
T d2dg1a1 191 LWVTE--TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY--GQGRVLVFN-KRGYPIGQIL 265 (319)
T ss_dssp EEEEE--GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE--TTTEEEEEC-TTSCEEEEEE
T ss_pred EEEec--ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc--CCCEEEEEC-CCCcEEEEEe
Confidence 77775 46889999998632 221111 1123467899999999777643 689999999 5788888775
Q ss_pred ------CCCCCEEEEEEeCCCCEEEEEECC----CCEEEEEcC
Q psy4876 552 ------GHSARVLNLAMSPDETTVLSAGAD----ETLRLWKIF 584 (609)
Q Consensus 552 ------~h~~~V~~l~~spdg~~L~s~s~D----g~I~iWdl~ 584 (609)
++...+++++|.+++..+++.+.| +.-.||.+.
T Consensus 266 ~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~ 308 (319)
T d2dg1a1 266 IPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVN 308 (319)
T ss_dssp CTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEE
T ss_pred CCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEe
Confidence 344568899999988877666543 334455443
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.96 E-value=1.4e-07 Score=90.88 Aligned_cols=239 Identities=11% Similarity=-0.008 Sum_probs=146.7
Q ss_pred CCCCeEEEEEccCCCEEEEE-eCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCee
Q psy4876 334 GNENVCSVAWIQEGYMLGVG-TSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasg-s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
+.-...+|++.++|+..++. ...+.|..++...................+++ +++++++....+.|++++-... ..
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~-~~ 90 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN-QT 90 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC-CE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccc-ee
Confidence 34556899999999866654 44577777766543322222222233456667 4677666666555655544433 22
Q ss_pred EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCC
Q psy4876 411 VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD 490 (609)
Q Consensus 411 ~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~D 490 (609)
+.. ........++++.++|+++++-.....+..++..... ...... .......++++++++. ++++. ..+
T Consensus 91 ~~~-~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~-----~~~~~~-~~~~~p~~i~~~~~g~-~~v~~--~~~ 160 (260)
T d1rwia_ 91 VLP-FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-----QTVLPF-TGLNDPDGVAVDNSGN-VYVTD--TDN 160 (260)
T ss_dssp ECC-CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSS-----CEECCC-CSCCSCCEEEECTTCC-EEEEE--GGG
T ss_pred eee-eeeeeecccccccccceeEeeccccccccccccccce-----eeeeee-cccCCcceeeecCCCC-Eeeec--ccc
Confidence 222 2223567899999999988877667778888766541 111111 1223457899999875 66655 367
Q ss_pred CeEEEEECCCCceeEEE-cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEE
Q psy4876 491 RHIYFWNVSSGACLDSI-DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTV 569 (609)
Q Consensus 491 g~I~iwd~~t~~~~~~~-~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L 569 (609)
+.|..+|.......... ..-.....+++.++|.++++ ....+.|..++.............-.....|+++++|.++
T Consensus 161 ~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vs--d~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~ 238 (260)
T d1rwia_ 161 NRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVT--EHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVY 238 (260)
T ss_dssp TEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEE--ETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEE
T ss_pred ccccccccccceeeeeeccccCCCccceeeeeeeeeee--ecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEE
Confidence 88999998755433322 23356789999999987666 4567888888765443222212233567899999999987
Q ss_pred EEEECCCCEEEEEcCC
Q psy4876 570 LSAGADETLRLWKIFE 585 (609)
Q Consensus 570 ~s~s~Dg~I~iWdl~~ 585 (609)
++-..++.|+.++..+
T Consensus 239 vad~~~~rI~~i~~~~ 254 (260)
T d1rwia_ 239 VADRGNDRVVKLTSLE 254 (260)
T ss_dssp EEEGGGTEEEEECCCG
T ss_pred EEECCCCEEEEEeCCC
Confidence 7766677666555443
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=6.1e-07 Score=85.89 Aligned_cols=222 Identities=17% Similarity=0.122 Sum_probs=141.6
Q ss_pred eEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCC---eEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCE
Q psy4876 358 TVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCG---NIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRY 432 (609)
Q Consensus 358 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg---~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (609)
.|.|.|.. |...+.+..+...+...+| ||+.|+...... .+.+.+.... ....+..+........|+|+|..
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~ 96 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--AVRQVASFPRHNGAPAFSPDGSK 96 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--CEEEEECCSSCEEEEEECTTSSE
T ss_pred EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccC--ceeEEeeeecccccceecCCCCe
Confidence 57777765 4444444456677888999 688887654433 4666666655 34555667888899999999999
Q ss_pred EEEEeC-CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCC
Q psy4876 433 LASGGN-DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKS 511 (609)
Q Consensus 433 lasgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~ 511 (609)
++.... ++...++...... .................+++++..++++........|.+.++..+..........
T Consensus 97 i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ 171 (269)
T d2hqsa1 97 LAFALSKTGSLNLYVMDLAS-----GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGS 171 (269)
T ss_dssp EEEEECTTSSCEEEEEETTT-----CCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSS
T ss_pred eeEeeecCCccceeeccccc-----ccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccc
Confidence 887664 3333333222221 2233333445555667788888777776531123457777777665554444556
Q ss_pred CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEEC---CCCEEEEEcCCCcc
Q psy4876 512 QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGA---DETLRLWKIFEKVK 588 (609)
Q Consensus 512 ~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~---Dg~I~iWdl~~~~~ 588 (609)
......|+|+++.++..+. ..+...+|..........+..+........|+|||+.|+-.+. ...|.+|++.++..
T Consensus 172 ~~~~~~~spdg~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~ 250 (269)
T d2hqsa1 172 QNQDADVSSDGKFMVMVSS-NGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 250 (269)
T ss_dssp EEEEEEECTTSSEEEEEEE-CSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred cccccccccccceeEEEee-cCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 7788899999999988753 4455455444333223344456667788999999998875554 34688999987654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=4.8e-07 Score=94.96 Aligned_cols=283 Identities=12% Similarity=0.118 Sum_probs=158.8
Q ss_pred EecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec--CCCCeEEEEEccCCCEEEE
Q psy4876 276 DWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE--GNENVCSVAWIQEGYMLGV 352 (609)
Q Consensus 276 ~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--h~~~V~~v~~spdg~~Las 352 (609)
.|.+++ ++.-..+|.|.+||+.+ +....+.... ....+....|||||++|+.
T Consensus 23 ~W~~~~~~~~~~~~g~i~~~~~~~-------------------------~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~ 77 (465)
T d1xfda1 23 KWISDTEFIYREQKGTVRLWNVET-------------------------NTSTVLIEGKKIESLRAIRYEISPDREYALF 77 (465)
T ss_dssp CBSSSSCBCCCCSSSCEEEBCGGG-------------------------CCCEEEECTTTTTTTTCSEEEECTTSSEEEE
T ss_pred EEeCCCcEEEEeCCCcEEEEECCC-------------------------CCEEEEEcCccccccccceeEECCCCCeEEE
Confidence 465554 33344577899999988 4444443333 3346778899999999887
Q ss_pred EeC---------CCeEEEEeCCCCeeEEEec--CCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 353 GTS---------LGTVQLWDVSAKKKCRTMD--GHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 353 gs~---------dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
+.. .+.+.|+|+.++....... .....+....| +|+.|+-.. ++.|.+.+...+.....+..+...
T Consensus 78 ~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~ 156 (465)
T d1xfda1 78 SYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEG 156 (465)
T ss_dssp EESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTT
T ss_pred EEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcc
Confidence 643 5788999999876543322 23344555667 677776654 578888888765432222222222
Q ss_pred Ce-----------------EEEEEccCCCEEEEEeCC-Cc---------------------------------EEEEeCC
Q psy4876 420 EV-----------------CGLKWSPDGRYLASGGND-NL---------------------------------LNIWSGV 448 (609)
Q Consensus 420 ~V-----------------~~l~~spdg~~lasgs~D-g~---------------------------------I~iwd~~ 448 (609)
.| .++.|||||++||....| .. +.++|+.
T Consensus 157 ~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~ 236 (465)
T d1xfda1 157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN 236 (465)
T ss_dssp TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred eeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecC
Confidence 12 467899999999986532 22 3444444
Q ss_pred CCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe-ccCCCeEEEEECCCCceeEEEcC--CC----CeEEEEEcCC
Q psy4876 449 PGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG-GTADRHIYFWNVSSGACLDSIDT--KS----QVCALLWNSD 521 (609)
Q Consensus 449 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg-Gs~Dg~I~iwd~~t~~~~~~~~~--~~----~v~sl~~s~~ 521 (609)
.+.......+..........+..+.|.+++..++.... +.....|.++|..+|++...+.. .. .-....|+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~d 316 (465)
T d1xfda1 237 GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKD 316 (465)
T ss_dssp SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTT
T ss_pred CCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccC
Confidence 33211000011111122334678999998854433332 11224688899999987665532 21 2245689999
Q ss_pred CCeEEEEEe-cCCC--eEEEEECC------CCceEEEEeCCCCCEEEE-EEeCCCCEEE-EEECCC--CEEEEEcC
Q psy4876 522 YKELVSAHG-FAQN--QLIIWKYP------SLVKVAELHGHSARVLNL-AMSPDETTVL-SAGADE--TLRLWKIF 584 (609)
Q Consensus 522 g~~l~~~sG-~~dg--~I~Iwd~~------~~~~~~~l~~h~~~V~~l-~~spdg~~L~-s~s~Dg--~I~iWdl~ 584 (609)
|+.++.... ..+| .+..+.+. .+..+..+....-.|..+ +|+.++..|+ ++..++ .-.||.+.
T Consensus 317 g~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~ 392 (465)
T d1xfda1 317 GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (465)
T ss_dssp SCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred CCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEE
Confidence 987654321 1222 33333321 223333333333345554 6888877664 454432 33466654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.77 E-value=2.2e-06 Score=84.96 Aligned_cols=239 Identities=9% Similarity=0.035 Sum_probs=146.2
Q ss_pred EEEEecCCC-eEEEEc--------CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec---CCCCeEE
Q psy4876 273 NLIDWSHFN-VLAVAL--------GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE---GNENVCS 340 (609)
Q Consensus 273 ~~l~wsp~~-lla~s~--------dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---h~~~V~~ 340 (609)
..++|.+++ ++.+.. ++.|..||..+ +......... ..+....
T Consensus 21 EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~-------------------------~~~~~~~~~~~~~~~g~P~G 75 (314)
T d1pjxa_ 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT-------------------------GKKTVICKPEVNGYGGIPAG 75 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTT-------------------------CCEEEEECCEETTEECCEEE
T ss_pred eEeEEeCCCCEEEEECccccccccCCEEEEEECCC-------------------------CcEEEEECCccccCCCccee
Confidence 457888886 444332 35788888877 4333322211 1234678
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCC----ceEEEEe--cCCEEEEEec---------------CCeE
Q psy4876 341 VAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDV----RVGALAW--NTYILSSGSR---------------CGNI 399 (609)
Q Consensus 341 v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~----~V~~l~~--~~~~L~sgs~---------------dg~I 399 (609)
++|.++|+.|+++.....|..++.+............+ ....+++ +|.+.++-.. .|.|
T Consensus 76 l~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v 155 (314)
T d1pjxa_ 76 CQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred EEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceE
Confidence 99999999888888777788889765432221111111 2456777 3566655321 2345
Q ss_pred EEEEcCCCCeeEEEEccCCCCeEEEEEccCCC-----EEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-CcccEEEEE
Q psy4876 400 VHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR-----YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-HQAAVKAIA 473 (609)
Q Consensus 400 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-----~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~l~ 473 (609)
..++... .... +...-...+.++|++++. ++++-+..+.|+.||+.........+....+.. +......++
T Consensus 156 ~~~~~dg--~~~~-~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGia 232 (314)
T d1pjxa_ 156 YCFTTDG--QMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD 232 (314)
T ss_dssp EEECTTS--CEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred EEEeecC--ceeE-eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeE
Confidence 4444432 2222 222333457899999765 445556678899998764321110111122222 223456899
Q ss_pred EcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q psy4876 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS 543 (609)
Q Consensus 474 ~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~ 543 (609)
+..+|. |+++.. ..+.|.+||.+.+..+..+... ..+++++|.++++.|+++. ..+|.|..++++.
T Consensus 233 vD~~Gn-lyVa~~--~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~-~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 233 FDEDNN-LLVANW--GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE-HENNAVWKFEWQR 299 (314)
T ss_dssp EBTTCC-EEEEEE--TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEE-TTTTEEEEEECSS
T ss_pred EecCCc-EEEEEc--CCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEE-CCCCcEEEEECCC
Confidence 999985 555542 5789999999888877777664 5789999999998776653 3678888888753
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.77 E-value=1.8e-06 Score=82.90 Aligned_cols=192 Identities=12% Similarity=0.013 Sum_probs=125.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~ 413 (609)
.....|+++++|+++++...++.|++++..+...+.... .......+++ +++++++-..+..+..++..........
T Consensus 57 ~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~ 135 (260)
T d1rwia_ 57 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP 135 (260)
T ss_dssp CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECC
T ss_pred cCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeee
Confidence 456789999999988777777777776655544443332 2345678888 4577766666667777776654322211
Q ss_pred EccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeE
Q psy4876 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHI 493 (609)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I 493 (609)
. .......+++++++|+++++...++.|..+|.... ...............|++.++| .|+++. ...+.|
T Consensus 136 ~-~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~------~~~~~~~~~~~~p~gi~~d~~g-~l~vsd--~~~~~i 205 (260)
T d1rwia_ 136 F-TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN------NQVVLPFTDITAPWGIAVDEAG-TVYVTE--HNTNQV 205 (260)
T ss_dssp C-CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC------CEEECCCSSCCSEEEEEECTTC-CEEEEE--TTTTEE
T ss_pred e-cccCCcceeeecCCCCEeeeccccccccccccccc------eeeeeeccccCCCccceeeeee-eeeeee--cCCCEE
Confidence 1 22345678999999998888888889999998754 2222222344566899999987 577765 357788
Q ss_pred EEEECCCCceeEEEcC--CCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 494 YFWNVSSGACLDSIDT--KSQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 494 ~iwd~~t~~~~~~~~~--~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
..++..... ...+.. -.....|+++++|..+++ ...++.|..++.
T Consensus 206 ~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~va--d~~~~rI~~i~~ 252 (260)
T d1rwia_ 206 VKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVA--DRGNDRVVKLTS 252 (260)
T ss_dssp EEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEE--EGGGTEEEEECC
T ss_pred EEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEE--ECCCCEEEEEeC
Confidence 888765443 222222 246789999999876655 345666666553
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.76 E-value=4.4e-06 Score=80.99 Aligned_cols=192 Identities=10% Similarity=0.148 Sum_probs=131.4
Q ss_pred eEEEEEccCC-CEEEEE-eCCCeEEEEeCCCCeeEEEec-CCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 338 VCSVAWIQEG-YMLGVG-TSLGTVQLWDVSAKKKCRTMD-GHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 338 V~~v~~spdg-~~Lasg-s~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
...+++..+. .++++. +.++.|.+++. .++....+. ........++. ++.++++....+.+.+++.... .+.
T Consensus 72 p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~--~~~ 148 (279)
T d1q7fa_ 72 PNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN--VLH 148 (279)
T ss_dssp EEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEE
T ss_pred cccccccccccccceeccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc--eee
Confidence 4456665554 444433 34457777775 456666654 34455667777 4677777777778888876542 444
Q ss_pred EE--ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec--CCcccEEEEEEcCCCCcEEEEEecc
Q psy4876 413 LL--QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS--RHQAAVKAIAWCPWSPNVLASGGGT 488 (609)
Q Consensus 413 ~~--~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~llasggGs 488 (609)
.+ ..+......+++.++|+.+++....+.|++||... +.+..+. +.......|++.++|. ++++.. .
T Consensus 149 ~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-------~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~-~ 219 (279)
T d1q7fa_ 149 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-------QYLRQIGGEGITNYPIGVGINSNGE-ILIADN-H 219 (279)
T ss_dssp EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-------CEEEEESCTTTSCSEEEEEECTTCC-EEEEEC-S
T ss_pred cccccccccccceeeeccceeEEeeeccccceeeeecCC-------ceeeeecccccccCCcccccccCCe-EEEEEC-C
Confidence 43 34566788999999999888888889999999763 3444442 3445578999999995 666542 2
Q ss_pred CCCeEEEEECCCCceeEEEcCC---CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc
Q psy4876 489 ADRHIYFWNVSSGACLDSIDTK---SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV 545 (609)
Q Consensus 489 ~Dg~I~iwd~~t~~~~~~~~~~---~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~ 545 (609)
.++.|.+|+ .+|+.+.++... .....+++.++|.+++ +. .++.|++|.+....
T Consensus 220 ~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~--~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 220 NNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVL-AS--KDYRLYIYRYVQLA 275 (279)
T ss_dssp SSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EE--TTTEEEEEECSCCC
T ss_pred CCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-Ee--CCCeEEEEEeeeec
Confidence 356799998 468888777543 3688999999997544 33 58899999987654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.75 E-value=9.1e-06 Score=82.03 Aligned_cols=165 Identities=12% Similarity=0.066 Sum_probs=104.2
Q ss_pred CceEEEEe--cCCEEEEEec-CCeEEEEEcCCCCeeE--EEE--ccCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCC
Q psy4876 378 VRVGALAW--NTYILSSGSR-CGNIVHHDVRSRDHKV--ALL--QNHTQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVP 449 (609)
Q Consensus 378 ~~V~~l~~--~~~~L~sgs~-dg~I~iwd~~~~~~~~--~~~--~~h~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~ 449 (609)
..+.++.| +++++++++. ...|.+|++....... ... .........++|+|+|+++.+.. .++.|.+|++..
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence 45678888 5787777654 4578888776543221 111 12346788999999999876555 578999999876
Q ss_pred CCCCCCccceEee--------------cCCcccEEEEEEcCCCCcEEEEEecc---CCCeEEEEECCCCceeEEE-----
Q psy4876 450 GQHTFSTQPIHSL--------------SRHQAAVKAIAWCPWSPNVLASGGGT---ADRHIYFWNVSSGACLDSI----- 507 (609)
Q Consensus 450 ~~~~~~~~~~~~~--------------~~h~~~V~~l~~sp~~~~llasggGs---~Dg~I~iwd~~t~~~~~~~----- 507 (609)
..... ....... ..+......+.++|+|+.++++..+. ....|..|++.....+...
T Consensus 225 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 303 (365)
T d1jofa_ 225 ATHMP-VYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP 303 (365)
T ss_dssp TTCCE-EEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred CCceE-EEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence 53210 0011111 11223456889999999888876421 1234777877643222211
Q ss_pred --cCCCCeEEEEEcC-CCCeEEEEEecCCCeEEEEECCCC
Q psy4876 508 --DTKSQVCALLWNS-DYKELVSAHGFAQNQLIIWKYPSL 544 (609)
Q Consensus 508 --~~~~~v~sl~~s~-~g~~l~~~sG~~dg~I~Iwd~~~~ 544 (609)
........++++| +|++|+++ +..++.|.||++...
T Consensus 304 ~~~~G~~p~~i~~~p~~G~~l~va-~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 304 TPTSGGHSNAVSPCPWSDEWMAIT-DDQEGWLEIYRWKDE 342 (365)
T ss_dssp CSSCCTTCCCEEECTTCTTEEEEE-CSSSCEEEEEEEETT
T ss_pred EEcCCCCccEEEecCCCCCEEEEE-eCCCCeEEEEEEeCC
Confidence 1234677899998 78988876 457899999986543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=2.7e-06 Score=89.09 Aligned_cols=288 Identities=11% Similarity=0.061 Sum_probs=163.3
Q ss_pred eEEEEEecCCC-eEEEEc----------CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCe
Q psy4876 271 YLNLIDWSHFN-VLAVAL----------GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENV 338 (609)
Q Consensus 271 ~v~~l~wsp~~-lla~s~----------dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V 338 (609)
.+....||||+ .+.... .+.+.|+|+.+ +....+.... ....+
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~-------------------------~~~~~l~~~~~~~~~l 116 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH-------------------------GDPQSLDPPEVSNAKL 116 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS-------------------------CCCEECCCTTCCSCCC
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC-------------------------CceeeccCccCCcccc
Confidence 34556789996 333332 46889999988 6666654443 45567
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCC-CCce-----------------EEEEe--cCCEEEEEec-CC
Q psy4876 339 CSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGH-DVRV-----------------GALAW--NTYILSSGSR-CG 397 (609)
Q Consensus 339 ~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h-~~~V-----------------~~l~~--~~~~L~sgs~-dg 397 (609)
....|||||+.||.... +.|.+.+..++..++..... ...| ..+.| ||..|+.... +.
T Consensus 117 ~~~~wSPDG~~iafv~~-~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s 195 (465)
T d1xfda1 117 QYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDS 195 (465)
T ss_dssp SBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECT
T ss_pred ceeeeccCCceEEEEec-ceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEeccc
Confidence 77899999999988764 78999988877666554321 1111 35667 5777776542 22
Q ss_pred ---------------------------------eEEEEEcCCCCeeEEEEc-----cCCCCeEEEEEccCCCEEEEEeC-
Q psy4876 398 ---------------------------------NIVHHDVRSRDHKVALLQ-----NHTQEVCGLKWSPDGRYLASGGN- 438 (609)
Q Consensus 398 ---------------------------------~I~iwd~~~~~~~~~~~~-----~h~~~V~~l~~spdg~~lasgs~- 438 (609)
.+.++|+..+........ .....+..+.|++++++++...+
T Consensus 196 ~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR 275 (465)
T d1xfda1 196 RVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR 275 (465)
T ss_dssp TSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET
T ss_pred ccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEcc
Confidence 234444443321111111 11224678899999986665433
Q ss_pred C---CcEEEEeCCCCCCCCCccceEeecC-CcccE----EEEEEcCCCCcEEEEEeccCC--CeEEEEECC------CCc
Q psy4876 439 D---NLLNIWSGVPGQHTFSTQPIHSLSR-HQAAV----KAIAWCPWSPNVLASGGGTAD--RHIYFWNVS------SGA 502 (609)
Q Consensus 439 D---g~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V----~~l~~sp~~~~llasggGs~D--g~I~iwd~~------t~~ 502 (609)
+ ..|.++|..++. ....+.. ..+.| ....|.++|..++....-..+ +.++..++. .+.
T Consensus 276 ~q~~~~i~~~d~~tg~------~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~ 349 (465)
T d1xfda1 276 AQNVSILTLCDATTGV------CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND 349 (465)
T ss_dssp TSCEEEEEEEETTTCC------EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC
T ss_pred ccccceEEEEcCCCCc------EEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCc
Confidence 2 258889998873 2222211 22222 345799999876543110122 334444322 233
Q ss_pred eeEEEcC-CCCeEEE-EEcCCCCeEEEEEecC-CCeEEEEE--CCCCceEEEE---eCCCCCEEEEEEeCCCCEEEEEEC
Q psy4876 503 CLDSIDT-KSQVCAL-LWNSDYKELVSAHGFA-QNQLIIWK--YPSLVKVAEL---HGHSARVLNLAMSPDETTVLSAGA 574 (609)
Q Consensus 503 ~~~~~~~-~~~v~sl-~~s~~g~~l~~~sG~~-dg~I~Iwd--~~~~~~~~~l---~~h~~~V~~l~~spdg~~L~s~s~ 574 (609)
.+..+.. .-.|..+ .|+.+++.++..+... -+.-+||. +........+ ..+......+.|||+|++++..+.
T Consensus 350 ~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s 429 (465)
T d1xfda1 350 NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (465)
T ss_dssp CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred eeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEee
Confidence 3333333 3366665 5899988887654211 12334444 3332222212 123456779999999999885544
Q ss_pred C---CCEEEEEcCCCccch
Q psy4876 575 D---ETLRLWKIFEKVKSK 590 (609)
Q Consensus 575 D---g~I~iWdl~~~~~~~ 590 (609)
. -.+.+++..++....
T Consensus 430 ~~~~P~~~~~~~~~~~~~~ 448 (465)
T d1xfda1 430 GPGVPMVTVHNTTDKKKMF 448 (465)
T ss_dssp SSSSCCEEEEETTTCCEEE
T ss_pred cCCCCeEEEEECCCCCEEE
Confidence 3 467788877666543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.59 E-value=9.6e-06 Score=79.42 Aligned_cols=222 Identities=11% Similarity=0.042 Sum_probs=142.7
Q ss_pred eEEEEEecCCC-eEEE-EcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 271 YLNLIDWSHFN-VLAV-ALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 271 ~v~~l~wsp~~-lla~-s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
++..++++||| ++++ ..++.|+.|+... ....+.. ....+.+++|+++|+
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g--------------------------~~~~~~~--~~~~~~gla~~~dG~ 80 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDG--------------------------NQQIHAT--VEGKVSGLAFTSNGD 80 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTC--------------------------CEEEEEE--CSSEEEEEEECTTSC
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCC--------------------------CEEEEEc--CCCCcceEEEcCCCC
Confidence 57789999997 4444 4478888888654 3333333 457899999999999
Q ss_pred EEEEEeCCCeEEEEeCCCC--eeEEEe-cCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEcc-------
Q psy4876 349 MLGVGTSLGTVQLWDVSAK--KKCRTM-DGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQN------- 416 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~--~~~~~l-~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~------- 416 (609)
++++...++.+.+|+.... ...... .........+.+ ++.++++.+.++.|..+|.......+.....
T Consensus 81 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 160 (302)
T d2p4oa1 81 LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNS 160 (302)
T ss_dssp EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSST
T ss_pred eEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeec
Confidence 9998888888888876543 221111 224456778888 5677777778888998888876433322221
Q ss_pred --CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEE
Q psy4876 417 --HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIY 494 (609)
Q Consensus 417 --h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~ 494 (609)
.......+.+.. +.++++.+..+.|+.++....... .....+. .......+++.++|. ++++. ..++.|.
T Consensus 161 ~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~---~~~~~~~-~~~~pdgia~d~dG~-l~va~--~~~~~V~ 232 (302)
T d2p4oa1 161 ESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKP---GEPEIFV-EQTNIDDFAFDVEGN-LYGAT--HIYNSVV 232 (302)
T ss_dssp TCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCB---CCCEEEE-ESCCCSSEEEBTTCC-EEEEC--BTTCCEE
T ss_pred cCcccccccccccC-CceeeecCCCCeEEeccccccccc---ccccccc-CCCCCcceEECCCCC-EEEEE--cCCCcEE
Confidence 113456677654 335556667888988887754221 1111111 223456799999995 66554 2578899
Q ss_pred EEECCCCceeEEE--c-CCCCeEEEEE---cCCCCeEEEEE
Q psy4876 495 FWNVSSGACLDSI--D-TKSQVCALLW---NSDYKELVSAH 529 (609)
Q Consensus 495 iwd~~t~~~~~~~--~-~~~~v~sl~~---s~~g~~l~~~s 529 (609)
.++.. ++..... . .-...++++| .+|++.|++++
T Consensus 233 ~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt 272 (302)
T d2p4oa1 233 RIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 272 (302)
T ss_dssp EECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred EECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence 88765 4433332 2 2346899999 67888887754
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.53 E-value=0.00017 Score=70.08 Aligned_cols=217 Identities=11% Similarity=0.036 Sum_probs=143.3
Q ss_pred EEEEEccCC-CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEc
Q psy4876 339 CSVAWIQEG-YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQ 415 (609)
Q Consensus 339 ~~v~~spdg-~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~ 415 (609)
.+..|.+.. .+..+--..+.|..||..+++.. .+. ....+.++++ ++.++ .++.+ .|.++|..++.. ..+.
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~-va~~~-gl~~~d~~tg~~--~~l~ 94 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQL-IASDD-GLFLRDTATGVL--TLHA 94 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEE-EEETT-EEEEEETTTCCE--EEEE
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEE-EEEeC-ccEEeeccccee--eEEe
Confidence 356788755 44444446789999999887643 332 3456788888 44454 45555 588999988742 2222
Q ss_pred c-----CCCCeEEEEEccCCCEEEEEeCC----CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 416 N-----HTQEVCGLKWSPDGRYLASGGND----NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 416 ~-----h~~~V~~l~~spdg~~lasgs~D----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
. ....++.+.+.|+|++.++.... +.-.+|.+..+ +.. .+.........++|++++..++++.
T Consensus 95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g------~~~-~~~~~~~~~Ng~~~s~d~~~l~~~d- 166 (295)
T d2ghsa1 95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG------KVT-KLFADISIPNSICFSPDGTTGYFVD- 166 (295)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT------EEE-EEEEEESSEEEEEECTTSCEEEEEE-
T ss_pred eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCC------cEE-EEeeccCCcceeeecCCCceEEEee-
Confidence 1 12357889999999976665422 23455655544 222 2222334457899999998888776
Q ss_pred ccCCCeEEEEECCCC------ceeEEEc---CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCE
Q psy4876 487 GTADRHIYFWNVSSG------ACLDSID---TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARV 557 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t~------~~~~~~~---~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V 557 (609)
+..+.|..|++... +....+. .......+++..+|++.++. ...+.|..|| +.++.+..+.--...+
T Consensus 167 -t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~--~~~g~V~~~d-p~G~~~~~i~lP~~~~ 242 (295)
T d2ghsa1 167 -TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR--WGEGAVDRYD-TDGNHIARYEVPGKQT 242 (295)
T ss_dssp -TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE--ETTTEEEEEC-TTCCEEEEEECSCSBE
T ss_pred -cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeee--eCCCceEEec-CCCcEeeEecCCCCce
Confidence 47889999987521 1111122 23457889999999877764 3678999999 6788988887666789
Q ss_pred EEEEEe-CCCCEEEEEE
Q psy4876 558 LNLAMS-PDETTVLSAG 573 (609)
Q Consensus 558 ~~l~~s-pdg~~L~s~s 573 (609)
++++|- +|.+.|+..+
T Consensus 243 T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 243 TCPAFIGPDASRLLVTS 259 (295)
T ss_dssp EEEEEESTTSCEEEEEE
T ss_pred EEEEEeCCCCCEEEEEE
Confidence 999996 6777665443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.47 E-value=0.00042 Score=65.94 Aligned_cols=229 Identities=10% Similarity=0.120 Sum_probs=162.6
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCC
Q psy4876 340 SVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHT 418 (609)
Q Consensus 340 ~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 418 (609)
+.-.+|..+.||.-+ ...++|+|+++.+.++.+.-.+ .|.--.| +.+.|+..+. ..|+.|+++....+...+..|.
T Consensus 67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~ 143 (327)
T d1utca2 67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHS 143 (327)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSSEEEEECS-SEEEEEESSSSCCCEEEEECCG
T ss_pred hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCCEEEEEcC-CceEEEcccCCCCchhhhhhcc
Confidence 445678888888766 4689999999999988887444 5555566 7888877765 5799999976556777777664
Q ss_pred ----CCeEEEEEccCCCEEEEEeC-------CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC--CcEEEEE
Q psy4876 419 ----QEVCGLKWSPDGRYLASGGN-------DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS--PNVLASG 485 (609)
Q Consensus 419 ----~~V~~l~~spdg~~lasgs~-------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~~llasg 485 (609)
..|-.-..+++++|++..+- .|.+.+|..+.. .-+.+++|.+....+.+..+. ..+++.+
T Consensus 144 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa 216 (327)
T d1utca2 144 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFA 216 (327)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-------EEEEECCSEEEEEEECCTTCSSCEEEEEEE
T ss_pred cccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-------cCccccceeeeeEEEEcCCCCCCceEEEEE
Confidence 46777888999999876542 367889998864 556778887766665543221 2344443
Q ss_pred e-ccCCCeEEEEECCCCc---e---eEEEc-------CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe
Q psy4876 486 G-GTADRHIYFWNVSSGA---C---LDSID-------TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH 551 (609)
Q Consensus 486 g-Gs~Dg~I~iwd~~t~~---~---~~~~~-------~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~ 551 (609)
. +...+++++-++.... . .+..+ ...-..++..++.+..++..+ .-|.|++||+.++.++..-+
T Consensus 217 ~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviT--K~G~i~lyDleTgt~i~~nR 294 (327)
T d1utca2 217 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT--KYGYIHLYDLETGTCIYMNR 294 (327)
T ss_dssp EEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEE--TTSEEEEEETTTCCEEEEEE
T ss_pred ECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEe--cCcEEEEEEcccccEEEEee
Confidence 2 2345789999986521 1 11111 123577899999999998876 79999999999999998877
Q ss_pred CCCCCEEEEEEeCCCCEEEEEECCCCEEE
Q psy4876 552 GHSARVLNLAMSPDETTVLSAGADETLRL 580 (609)
Q Consensus 552 ~h~~~V~~l~~spdg~~L~s~s~Dg~I~i 580 (609)
-..+.|...+-+.+..=++....+|.|.-
T Consensus 295 Is~~~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 295 ISGETIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred cCCCceEEeccCCCCceEEEECCCCeEEE
Confidence 77777776666666566666777777653
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.38 E-value=3.6e-05 Score=73.14 Aligned_cols=227 Identities=5% Similarity=-0.009 Sum_probs=124.6
Q ss_pred ecCC--C-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEE
Q psy4876 277 WSHF--N-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVG 353 (609)
Q Consensus 277 wsp~--~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasg 353 (609)
.||+ | .++-..++.|++.|+.+ +....+.. +.+.+...+|||||+.||..
T Consensus 6 ~sPdi~G~~v~f~~~~dl~~~d~~~-------------------------g~~~~Lt~--~~~~~~~p~~SPDG~~iaf~ 58 (281)
T d1k32a2 6 LNPDIHGDRIIFVCCDDLWEHDLKS-------------------------GSTRKIVS--NLGVINNARFFPDGRKIAIR 58 (281)
T ss_dssp EEEEEETTEEEEEETTEEEEEETTT-------------------------CCEEEEEC--SSSEEEEEEECTTSSEEEEE
T ss_pred cCCCCCCCEEEEEeCCcEEEEECCC-------------------------CCEEEEec--CCCcccCEEECCCCCEEEEE
Confidence 4566 4 56666778899999988 66665543 56778999999999999865
Q ss_pred eC-C-----CeEEEEeCCCCeeEEEecC------CCCceEEEEe--cCCEEEEEecC------CeEEEEEcCCCCeeEEE
Q psy4876 354 TS-L-----GTVQLWDVSAKKKCRTMDG------HDVRVGALAW--NTYILSSGSRC------GNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 354 s~-d-----g~I~iwd~~~~~~~~~l~~------h~~~V~~l~~--~~~~L~sgs~d------g~I~iwd~~~~~~~~~~ 413 (609)
.. + ..|.+++..+++..+.... .........| +++.|+..... ..+...+.... ....
T Consensus 59 ~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 136 (281)
T d1k32a2 59 VMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI--NFVP 136 (281)
T ss_dssp EEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT--EEEE
T ss_pred EeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCc--eeEE
Confidence 42 2 2477788877765543221 1123445566 56766654322 22444455443 1222
Q ss_pred EccCCCCeEEEEEccCCCEEEEEeCCC-----------cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEE
Q psy4876 414 LQNHTQEVCGLKWSPDGRYLASGGNDN-----------LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~lasgs~Dg-----------~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 482 (609)
. +......+.+.+.+..++....+. ...++.... ........+........+.++ .++
T Consensus 137 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~ 205 (281)
T d1k32a2 137 L--NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-------GAFKKIVDMSTHVSSPVIVGH--RIY 205 (281)
T ss_dssp C--CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET-------TEEEEEECCSSCCEEEEEETT--EEE
T ss_pred e--cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccc-------cceeeccCCccccceeeeecc--ccc
Confidence 1 222223333333333333322211 011111111 111222223334455556654 344
Q ss_pred EEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE
Q psy4876 483 ASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKV 547 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~ 547 (609)
..........|.++|+.+++... +..........|+|+|+.|+... ++.|+++|+.+++..
T Consensus 206 ~~~~~~~~~~l~~~d~~g~~~~~-lt~~~~~~~~~~SpDG~~I~f~~---~~~l~~~d~~~g~~~ 266 (281)
T d1k32a2 206 FITDIDGFGQIYSTDLDGKDLRK-HTSFTDYYPRHLNTDGRRILFSK---GGSIYIFNPDTEKIE 266 (281)
T ss_dssp EEECTTSSCEEEEEETTSCSCEE-CCCCCSSCEEEEEESSSCEEEEE---TTEEEEECTTTCCEE
T ss_pred eecccccccceEEEeCCCCceEE-eecCCCcccccCcCCCCEEEEEe---CCEEEEEECCCCCEE
Confidence 44322345678888988766443 33333333456899999998754 688999999877654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.36 E-value=0.00023 Score=69.85 Aligned_cols=203 Identities=10% Similarity=0.045 Sum_probs=128.2
Q ss_pred ceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCC----CcEEEEeCCCCCC
Q psy4876 379 RVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGND----NLLNIWSGVPGQH 452 (609)
Q Consensus 379 ~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~D----g~I~iwd~~~~~~ 452 (609)
.+..++| +++++++-...+.|..|+..... ....+........+|++++||+++++...+ +.|...+....
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~-~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~-- 117 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD-- 117 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC--
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCe-EEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc--
Confidence 3456778 36766666678889888887653 344444556678899999999988775432 34555555544
Q ss_pred CCCccceEeec--CCcccEEEEEEcCCCCcEEEEEecc----CCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEE
Q psy4876 453 TFSTQPIHSLS--RHQAAVKAIAWCPWSPNVLASGGGT----ADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELV 526 (609)
Q Consensus 453 ~~~~~~~~~~~--~h~~~V~~l~~sp~~~~llasggGs----~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~ 526 (609)
....... ........+++.++|. ++++.... ..+.+..++...+........-.....++|+++++.|+
T Consensus 118 ----~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~ly 192 (319)
T d2dg1a1 118 ----NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLW 192 (319)
T ss_dssp ----SCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEE
T ss_pred ----eeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEE
Confidence 2222221 1233578899999995 66553110 12346666655443333333334678899999999887
Q ss_pred EEEecCCCeEEEEECCCC-ceEE----E---EeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 527 SAHGFAQNQLIIWKYPSL-VKVA----E---LHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 527 ~~sG~~dg~I~Iwd~~~~-~~~~----~---l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
++ ....+.|..|++... .... . ........-.|++..+|++.++....+.|.+|+-. ++....
T Consensus 193 va-d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~-G~~l~~ 263 (319)
T d2dg1a1 193 VT-ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQ 263 (319)
T ss_dssp EE-EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEE
T ss_pred Ee-cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC-CcEEEE
Confidence 76 346889999987532 1111 1 11112335689999999988888889999999964 444433
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.29 E-value=9.6e-05 Score=70.02 Aligned_cols=230 Identities=10% Similarity=0.009 Sum_probs=128.4
Q ss_pred EEccC--CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEe-cCC-----eEEEEEcCCCCeeE
Q psy4876 342 AWIQE--GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGS-RCG-----NIVHHDVRSRDHKV 411 (609)
Q Consensus 342 ~~spd--g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs-~dg-----~I~iwd~~~~~~~~ 411 (609)
..+|+ |+.+|..+. |.|.+.|+.+++. +.+..+...+...+| ||+.|+... .++ .|.+++...+. .
T Consensus 5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~--~ 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE--I 80 (281)
T ss_dssp CEEEEEETTEEEEEET-TEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE--E
T ss_pred ccCCCCCCCEEEEEeC-CcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc--e
Confidence 46788 999887654 7899999987765 456667778888899 577777543 222 47777777653 2
Q ss_pred EEEccC-------CCCeEEEEEccCCCEEEEEeCC------CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC
Q psy4876 412 ALLQNH-------TQEVCGLKWSPDGRYLASGGND------NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS 478 (609)
Q Consensus 412 ~~~~~h-------~~~V~~l~~spdg~~lasgs~D------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 478 (609)
..+..+ ........|+|||+.|+..... ..+...+...+ .. ... +...... .|.+++
T Consensus 81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~--~~~~~~~-~~~~~~ 150 (281)
T d1k32a2 81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI------NF-VPL--NLGPATH-ILFADG 150 (281)
T ss_dssp EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT------EE-EEC--CSCSCSE-EEEETT
T ss_pred EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCc------ee-EEe--cCCccce-eeecCC
Confidence 223222 2345678999999998876432 23445555433 11 111 1122222 334444
Q ss_pred CcEEEEEeccC---------CCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEE-ecCCCeEEEEECCCCceEE
Q psy4876 479 PNVLASGGGTA---------DRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAH-GFAQNQLIIWKYPSLVKVA 548 (609)
Q Consensus 479 ~~llasggGs~---------Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~s-G~~dg~I~Iwd~~~~~~~~ 548 (609)
..+++...... .....++.....................++++. ++... ......|.++|+.+....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~d~~g~~~~- 227 (281)
T d1k32a2 151 RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTDLDGKDLR- 227 (281)
T ss_dssp EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEETTSCSCE-
T ss_pred CeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccc--cceecccccccceEEEeCCCCceE-
Confidence 44444331000 111222222233333333344455566666653 33322 223456888888766543
Q ss_pred EEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 549 ELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 549 ~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
.+..+.. .....|+|||+.|+.. .++.|+++|+.+++..+
T Consensus 228 ~lt~~~~-~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 228 KHTSFTD-YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEK 267 (281)
T ss_dssp ECCCCCS-SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred EeecCCC-cccccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence 3332222 2234689999987754 46889999998876543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.18 E-value=0.0018 Score=62.46 Aligned_cols=221 Identities=10% Similarity=-0.051 Sum_probs=139.8
Q ss_pred EEEecCC-C-eEEEE-cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEE
Q psy4876 274 LIDWSHF-N-VLAVA-LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYML 350 (609)
Q Consensus 274 ~l~wsp~-~-lla~s-~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~L 350 (609)
...|++. + ++-+. ..+.|+-||..+ +... +.. ....+.++++.++|.++
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~-------------------------g~~~-~~~--~~~~~~~i~~~~dg~l~ 73 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLAS-------------------------GRKT-VHA--LPFMGSALAKISDSKQL 73 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTT-------------------------TEEE-EEE--CSSCEEEEEEEETTEEE
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCC-------------------------CeEE-EEE--CCCCcEEEEEecCCCEE
Confidence 3557763 4 33333 467899999887 4432 223 34678899999998777
Q ss_pred EEEeCCCeEEEEeCCCCeeEEEecC----CCCceEEEEe--cCCEEEEEec----CCeEEEEEcCCCCeeEEEEccCCCC
Q psy4876 351 GVGTSLGTVQLWDVSAKKKCRTMDG----HDVRVGALAW--NTYILSSGSR----CGNIVHHDVRSRDHKVALLQNHTQE 420 (609)
Q Consensus 351 asgs~dg~I~iwd~~~~~~~~~l~~----h~~~V~~l~~--~~~~L~sgs~----dg~I~iwd~~~~~~~~~~~~~h~~~ 420 (609)
+ ++.+ -|.++|..+++....... ....+..+.+ +|.+.++... .+.-.+|.+..+ ....... .-..
T Consensus 74 v-a~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g-~~~~~~~-~~~~ 149 (295)
T d2ghsa1 74 I-ASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG-KVTKLFA-DISI 149 (295)
T ss_dssp E-EETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT-EEEEEEE-EESS
T ss_pred E-EEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCC-cEEEEee-ccCC
Confidence 6 4555 488999998875443321 1234667777 4565555432 223455666554 2333232 2345
Q ss_pred eEEEEEccCCCEEEE-EeCCCcEEEEeCCCCCCCCCc--cceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEE
Q psy4876 421 VCGLKWSPDGRYLAS-GGNDNLLNIWSGVPGQHTFST--QPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWN 497 (609)
Q Consensus 421 V~~l~~spdg~~las-gs~Dg~I~iwd~~~~~~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd 497 (609)
.+.++|+++++.+.. -+..+.|+.|++......... .....+.+..+....+++..+|. +.++.- ..+.|..||
T Consensus 150 ~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~--~~g~V~~~d 226 (295)
T d2ghsa1 150 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARW--GEGAVDRYD 226 (295)
T ss_dssp EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEE--TTTEEEEEC
T ss_pred cceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC-EEeeee--CCCceEEec
Confidence 678999999986654 455788999887543211111 11223334455678999999885 555432 478899999
Q ss_pred CCCCceeEEEcCC-CCeEEEEEc-CCCCeEEEEEe
Q psy4876 498 VSSGACLDSIDTK-SQVCALLWN-SDYKELVSAHG 530 (609)
Q Consensus 498 ~~t~~~~~~~~~~-~~v~sl~~s-~~g~~l~~~sG 530 (609)
..|+.+..+... ..+++++|- ++.+.|++.+.
T Consensus 227 -p~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 227 -TDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp -TTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred -CCCcEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence 468899988876 479999996 67788877654
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.09 E-value=0.0011 Score=66.37 Aligned_cols=291 Identities=9% Similarity=0.048 Sum_probs=175.1
Q ss_pred cCCccCCceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccc-----cccce----ee----
Q psy4876 262 DAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQ-----DNRAI----DH---- 328 (609)
Q Consensus 262 ~ap~~~~~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----~~---- 328 (609)
-+|+-.|+|| .+.++|..|.|+|+-+-+....+++-.|++..-.-+..... ..+-. ..
T Consensus 5 v~pG~~Deyy---------~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~ 75 (459)
T d1fwxa2 5 VAPGQLDDYY---------GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAAN 75 (459)
T ss_dssp CCTTCCCSEE---------EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC----------
T ss_pred cCCCCcccEE---------EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhcc
Confidence 3577778887 24568889999999999988888898888876655542110 00000 00
Q ss_pred ---eeeecCCCCeEEEEEcc---CCCEEEEEe-CCCeEEEEeCCCCeeEEEecC-CCCceEEEEe----cCCEEEEEecC
Q psy4876 329 ---LMDLEGNENVCSVAWIQ---EGYMLGVGT-SLGTVQLWDVSAKKKCRTMDG-HDVRVGALAW----NTYILSSGSRC 396 (609)
Q Consensus 329 ---l~~~~h~~~V~~v~~sp---dg~~Lasgs-~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~----~~~~L~sgs~d 396 (609)
..... +..=-.+++.. ||++|++.. .++.|.+.|+.+.+..+.+.. ....+..+.. +..+++.++.+
T Consensus 76 g~~~~~~G-D~HHP~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~ 154 (459)
T d1fwxa2 76 GKRIHDNG-DLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGED 154 (459)
T ss_dssp ----CCCC-CBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECS
T ss_pred CcccccCC-CcCCCcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCcc
Confidence 01111 11112566654 789988876 568999999999987665432 3344455544 34577766653
Q ss_pred ------------------CeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCC-------------------
Q psy4876 397 ------------------GNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGND------------------- 439 (609)
Q Consensus 397 ------------------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~D------------------- 439 (609)
+.+.++|..+.+ ....+. -......+.++++|+++++.+.+
T Consensus 155 ~vP~pndg~~l~d~~~y~~~~t~ID~~tm~-V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~ 232 (459)
T d1fwxa2 155 ETPLVNDGTNMEDVANYVNVFTAVDADKWE-VAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIV 232 (459)
T ss_dssp CEESSCSSSSTTCGG-EEEEEEEEETTTTE-EEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred ccccCCCCccccchhhcceEEEEEecCCce-EEEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEE
Confidence 236678888764 333222 23456788999999998887643
Q ss_pred -------------------CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 440 -------------------NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 440 -------------------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
+-+.+.|.+.... ...+..+... .....+..+|||++++++| ..+.++.++|++.
T Consensus 233 V~n~~rie~av~~Gk~~eingV~VVD~~~~~~---~~v~~yIPVp-KsPHGV~vSPDGKyi~VaG--KLs~tVSViD~~K 306 (459)
T d1fwxa2 233 VFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS---SLFTRYIPIA-NNPHGCNMAPDKKHLCVAG--KLSPTVTVLDVTR 306 (459)
T ss_dssp EEEHHHHHHHHHHTCSEEETTEEEEECSGG-----CSSEEEEEEE-SSCCCEEECTTSSEEEEEC--TTSSBEEEEEGGG
T ss_pred EechHHhHHhhhcCCcEEeCCceeecccccCC---cceeEEEecC-CCCCceEECCCCCEEEEeC--CcCCcEEEEEehh
Confidence 1223333332100 0111122111 2235688999998888876 4899999999963
Q ss_pred Cc------------eeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC----------CceEEEEeCCCCCEE
Q psy4876 501 GA------------CLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS----------LVKVAELHGHSARVL 558 (609)
Q Consensus 501 ~~------------~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~----------~~~~~~l~~h~~~V~ 558 (609)
-. .....+..-.....+|+..|. .+ .+-+-|.+|.-|++.. ...+..+.-|-. +-
T Consensus 307 i~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~-ay-tslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~-~g 383 (459)
T d1fwxa2 307 FDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGN-AY-TSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-PG 383 (459)
T ss_dssp HHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSE-EE-EEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-EE
T ss_pred hhhhhcccCCccccEEeecccCcCccccccCCCce-EE-EEeeccceEEEEecchhhhhhccccCCcceeccccccC-CC
Confidence 11 122223344667788888774 33 3357899999999742 234445543322 12
Q ss_pred EE------EEeCCCCEEEEEE
Q psy4876 559 NL------AMSPDETTVLSAG 573 (609)
Q Consensus 559 ~l------~~spdg~~L~s~s 573 (609)
.+ ...|||++|++..
T Consensus 384 h~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 384 HLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp EEEETTTTSTTCCSSEEEEEE
T ss_pred CCccCcCCcCCCCCCEEEEec
Confidence 22 2367999999886
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.07 E-value=0.005 Score=58.18 Aligned_cols=220 Identities=8% Similarity=0.006 Sum_probs=141.8
Q ss_pred CCCCeEEEEEccCCCEEEEEe-CCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEE-EEEecCCeEEEEEcCCCCe
Q psy4876 334 GNENVCSVAWIQEGYMLGVGT-SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYIL-SSGSRCGNIVHHDVRSRDH 409 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs-~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L-~sgs~dg~I~iwd~~~~~~ 409 (609)
+...+.+|+|....+.|+... .++.|...++........+......+..+++| +..| ++-...+.|.+.+++...
T Consensus 34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~- 112 (263)
T d1npea_ 34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ- 112 (263)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-
T ss_pred CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce-
Confidence 344578899998887777654 55789888887666555555444567777774 4444 455567899999998653
Q ss_pred eEEEEccCCCCeEEEEEccCCCEEEEEeCC-C--cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 410 KVALLQNHTQEVCGLKWSPDGRYLASGGND-N--LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~lasgs~D-g--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
....+...-..+..++++|...+++..... + .|.--++... .........-....+|++.+.+..|+.+-.
T Consensus 113 ~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~------~~~~i~~~~~~~P~glaiD~~~~~lYw~d~ 186 (263)
T d1npea_ 113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT------NRRILAQDNLGLPNGLTFDAFSSQLCWVDA 186 (263)
T ss_dssp CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC------CCEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC------CceeeeeecccccceEEEeecCcEEEEEeC
Confidence 222333344678999999977766654332 2 3544455543 222222233456689999988877777653
Q ss_pred ccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe-CCCCCEEEEEEeCC
Q psy4876 487 GTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH-GHSARVLNLAMSPD 565 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~-~h~~~V~~l~~spd 565 (609)
..+.|...|+........+.......++++. +..|+.+ ....+.|...|..+++.+..+. .......+|+..++
T Consensus 187 --~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwt-d~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~ 261 (263)
T d1npea_ 187 --GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYT-DWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (263)
T ss_dssp --TTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEE-ETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred --CCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEE-ECCCCEEEEEECCCCccceEECCCCCCCcceEEEeCC
Confidence 5789999999765544444444456678775 4556654 3367889999998888776664 33344556665443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.94 E-value=0.0063 Score=57.46 Aligned_cols=230 Identities=7% Similarity=-0.020 Sum_probs=143.7
Q ss_pred CEEEEEeCCCeEEEEeCCCCe-----eEEEecCCCCceEEEEec--CC-EEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKK-----KCRTMDGHDVRVGALAWN--TY-ILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~-----~~~~l~~h~~~V~~l~~~--~~-~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
.+|+.+.. +.|+-.+++... ....+..+...+..|+|| .+ ++.+-..++.|...++.... ....+.....
T Consensus 2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~-~~~v~~~~~~ 79 (263)
T d1npea_ 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-PTTIIRQDLG 79 (263)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEEECTTCC
T ss_pred CEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC-cEEEEEeccc
Confidence 45555444 567777765432 122233344557778885 34 44444567889998887653 3333433345
Q ss_pred CeEEEEEccCCCEEEE-EeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEEC
Q psy4876 420 EVCGLKWSPDGRYLAS-GGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 420 ~V~~l~~spdg~~las-gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~ 498 (609)
.+.+|++..-+..|.. -...+.|.+.++... .....+.........++++|....++.+-.|.....|..-++
T Consensus 80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~------~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~ 153 (263)
T d1npea_ 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT------QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM 153 (263)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC------SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred cccEEEEeccCCeEEEeccCCCEEEEEecCCc------eEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecC
Confidence 7889999875555554 445679999998755 222223333456889999998888887754333445666677
Q ss_pred CCCceeEEEc-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEE-CCC
Q psy4876 499 SSGACLDSID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAG-ADE 576 (609)
Q Consensus 499 ~t~~~~~~~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s-~Dg 576 (609)
.......... .-.....+++.+.++.|+.+. ...+.|...++........+.+... ..+|++. +..|+... ..+
T Consensus 154 dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d-~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~--~~~lYwtd~~~~ 229 (263)
T d1npea_ 154 DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVD-AGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY--GKNLYYTDWKTN 229 (263)
T ss_dssp TSCCCEEEECTTCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE--TTEEEEEETTTT
T ss_pred CCCCceeeeeecccccceEEEeecCcEEEEEe-CCCCEEEEEECCCCCeEEEECCCCC-cEEEEEE--CCEEEEEECCCC
Confidence 6443333332 334678999999988887763 3678999999876554444454333 4578775 45565554 567
Q ss_pred CEEEEEcCCCccc
Q psy4876 577 TLRLWKIFEKVKS 589 (609)
Q Consensus 577 ~I~iWdl~~~~~~ 589 (609)
.|...|..++...
T Consensus 230 ~I~~~~~~~g~~~ 242 (263)
T d1npea_ 230 SVIAMDLAISKEM 242 (263)
T ss_dssp EEEEEETTTTEEE
T ss_pred EEEEEECCCCccc
Confidence 7887887766543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.019 Score=54.06 Aligned_cols=234 Identities=9% Similarity=-0.024 Sum_probs=143.7
Q ss_pred EEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEe-CCCeEEE
Q psy4876 283 LAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGT-SLGTVQL 361 (609)
Q Consensus 283 la~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs-~dg~I~i 361 (609)
|..+....|+-.++.+ .....+. .....+.+|+|.+..+.|+-.. .++.|..
T Consensus 4 Ll~s~~~~I~~~~l~~-------------------------~~~~~~~--~~~~~~~~id~d~~~~~lYw~D~~~~~I~~ 56 (266)
T d1ijqa1 4 LFFTNRHEVRKMTLDR-------------------------SEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICS 56 (266)
T ss_dssp EEEECBSSEEEEETTS-------------------------CCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEECCCeEEEEECCC-------------------------Ccceeee--CCCCceEEEEEEeCCCEEEEEECCCCEEEE
Confidence 4455566788888876 4443332 2445678999998887777664 4566776
Q ss_pred EeCCCC----eeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEE
Q psy4876 362 WDVSAK----KKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLA 434 (609)
Q Consensus 362 wd~~~~----~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (609)
.++... .....+......+..|++| +++.++-...+.|.+.++.... ....+........+|+++|...+|.
T Consensus 57 ~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~-~~~~~~~~~~~P~~l~vd~~~g~ly 135 (266)
T d1ijqa1 57 TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMY 135 (266)
T ss_dssp EEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEE
T ss_pred EEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCce-EEEEEcCCCCCcceEEEEcccCeEE
Confidence 666432 1222233333445556653 4555555567889999998764 3344445556789999999666665
Q ss_pred EEe--CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC--
Q psy4876 435 SGG--NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK-- 510 (609)
Q Consensus 435 sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-- 510 (609)
... ..+.|.-.++... .........-....++++++.+..|+.+-. ..+.|...|+........+...
T Consensus 136 ~~~~~~~~~I~r~~~dGs------~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~--~~~~I~~~~~dG~~~~~~~~~~~~ 207 (266)
T d1ijqa1 136 WTDWGTPAKIKKGGLNGV------DIYSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKR 207 (266)
T ss_dssp EEECSSSCEEEEEETTSC------CEEEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTT
T ss_pred EeccCCCcceeEeccCCC------ceecccccccceeeEEEeeccccEEEEecC--CcCEEEEEECCCCCEEEEEeCCCc
Confidence 544 3346777777643 222222233456789999998877777753 6789999999765544333322
Q ss_pred -CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCC
Q psy4876 511 -SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSA 555 (609)
Q Consensus 511 -~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~ 555 (609)
....++++. +..|+.+. ..++.|...+..++.....+.....
T Consensus 208 ~~~p~~lav~--~~~ly~td-~~~~~I~~~~~~~g~~~~~~~~~~~ 250 (266)
T d1ijqa1 208 LAHPFSLAVF--EDKVFWTD-IINEAIFSANRLTGSDVNLLAENLL 250 (266)
T ss_dssp TSSEEEEEEE--TTEEEEEE-TTTTEEEEEETTTCCCCEEEECSCS
T ss_pred ccccEEEEEE--CCEEEEEE-CCCCeEEEEECCCCcceEEEEcCCC
Confidence 245667766 34565543 3677888888777766665554433
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.42 E-value=0.022 Score=56.65 Aligned_cols=227 Identities=12% Similarity=0.077 Sum_probs=143.5
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEecCC-----------------------------------------CCceEEEEe---
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCRTMDGH-----------------------------------------DVRVGALAW--- 385 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~~l~~h-----------------------------------------~~~V~~l~~--- 385 (609)
+.+|+..|.|+|+-+.+++.+..+... ..--..+++
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG 95 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 95 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence 446788899999988887776655310 001124455
Q ss_pred --cCCEEEEEe-cCCeEEEEEcCCCCeeEEEE-ccCCCCeEEEEEcc--CCCEEEEEeCCC------------------c
Q psy4876 386 --NTYILSSGS-RCGNIVHHDVRSRDHKVALL-QNHTQEVCGLKWSP--DGRYLASGGNDN------------------L 441 (609)
Q Consensus 386 --~~~~L~sgs-~dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~sp--dg~~lasgs~Dg------------------~ 441 (609)
||++|++.. .++.|.+.|+++.+ ....+ ......+.++...+ .-.|++.++.+. .
T Consensus 96 tyDGrylFVNDkan~RVAvIdl~~fk-t~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~ 174 (459)
T d1fwxa2 96 KYDGRFLFMNDKANTRVARVRCDVMK-CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 174 (459)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTE-EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred ccceeEEEEEcCCCceEEEEECccee-eeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence 456666665 67889999999874 33322 23455677777654 455777776632 3
Q ss_pred EEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC------------eE----------------
Q psy4876 442 LNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR------------HI---------------- 493 (609)
Q Consensus 442 I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg------------~I---------------- 493 (609)
+.++|..+. +...++.. .+....+.++++|+++++++-.+..+ .+
T Consensus 175 ~t~ID~~tm------~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 175 FTAVDADKW------EVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp EEEEETTTT------EEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred EEEEecCCc------eEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 677888876 33333322 22456789999999888886322211 23
Q ss_pred -------EEEECCC---CceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc------------eEEEEe
Q psy4876 494 -------YFWNVSS---GACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV------------KVAELH 551 (609)
Q Consensus 494 -------~iwd~~t---~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~------------~~~~l~ 551 (609)
.+-|.+. ...+..+........+..+|||++++++ |.-+.++.|+|+.... ...+.
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~Va-GKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~- 325 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVA-GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP- 325 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEE-CTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC-
T ss_pred cEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEe-CCcCCcEEEEEehhhhhhhcccCCccccEEeec-
Confidence 3334332 1223334444456678999999999987 6689999999985321 11221
Q ss_pred CCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 552 GHSARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 552 ~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
...-.-++-+|..+|....|---|..|.-|++...
T Consensus 326 elglgPLht~fd~~g~aytslfids~v~kw~~~~~ 360 (459)
T d1fwxa2 326 ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA 360 (459)
T ss_dssp BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred ccCcCccccccCCCceEEEEeeccceEEEEecchh
Confidence 23345678899988876666678999999998543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.074 Score=49.72 Aligned_cols=228 Identities=10% Similarity=-0.067 Sum_probs=141.9
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEE-ecCCeEEEEEcCCCC---eeEEEEccCCCCeE
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSG-SRCGNIVHHDVRSRD---HKVALLQNHTQEVC 422 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sg-s~dg~I~iwd~~~~~---~~~~~~~~h~~~V~ 422 (609)
+|+.+.. ..|+..++.+......+. ....+..++|+ .+.|+-. ...+.|...++.... .....+...-..+.
T Consensus 3 fLl~s~~-~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~ 80 (266)
T d1ijqa1 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (266)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence 4554444 458888998755444444 45567788885 4444444 456677776665321 11222333345677
Q ss_pred EEEEccCCCEEEEE-eCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 423 GLKWSPDGRYLASG-GNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 423 ~l~~spdg~~lasg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
+|++.+.+..|..+ ...+.|.+.++... .....+.........++++|....++.+..| ..+.|...++...
T Consensus 81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~------~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~-~~~~I~r~~~dGs 153 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGV------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGV 153 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSS------SEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSC
T ss_pred eEEEeeccceEEEEecCCCEEEeEecCCc------eEEEEEcCCCCCcceEEEEcccCeEEEeccC-CCcceeEeccCCC
Confidence 89998766655554 45678999998865 3333344445667899999987777777542 4567888888654
Q ss_pred ceeEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC--CCCEEEEEEeCCCCEEEEE-ECCCC
Q psy4876 502 ACLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH--SARVLNLAMSPDETTVLSA-GADET 577 (609)
Q Consensus 502 ~~~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h--~~~V~~l~~spdg~~L~s~-s~Dg~ 577 (609)
........ -.....+++.+.++.|+.+- ...+.|...++........+... .....+|++. +..|+.+ ..++.
T Consensus 154 ~~~~l~~~~~~~p~gl~iD~~~~~lYw~d-~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~ 230 (266)
T d1ijqa1 154 DIYSLVTENIQWPNGITLDLLSGRLYWVD-SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEA 230 (266)
T ss_dssp CEEEEECSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred ceecccccccceeeEEEeeccccEEEEec-CCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCe
Confidence 44443333 25678999999999888864 46789999998655443333332 2346677776 3455554 46677
Q ss_pred EEEEEcCCCcc
Q psy4876 578 LRLWKIFEKVK 588 (609)
Q Consensus 578 I~iWdl~~~~~ 588 (609)
|...+..++..
T Consensus 231 I~~~~~~~g~~ 241 (266)
T d1ijqa1 231 IFSANRLTGSD 241 (266)
T ss_dssp EEEEETTTCCC
T ss_pred EEEEECCCCcc
Confidence 77777666553
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.24 E-value=0.019 Score=56.36 Aligned_cols=233 Identities=11% Similarity=0.030 Sum_probs=120.0
Q ss_pred CCCCeEEEEEccCCCEEEEEeCC-CeEEEEeCCCCeeEEEe--cCCCCceEEEEe-cCCEEEEEecC------CeEEEEE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSL-GTVQLWDVSAKKKCRTM--DGHDVRVGALAW-NTYILSSGSRC------GNIVHHD 403 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~d-g~I~iwd~~~~~~~~~l--~~h~~~V~~l~~-~~~~L~sgs~d------g~I~iwd 403 (609)
+.......++.++|.+++.|+.+ ..+.+||..+..-...- .........+.. ++.+++.|+.+ ..+.+||
T Consensus 74 ~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd 153 (387)
T d1k3ia3 74 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS 153 (387)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred cccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeec
Confidence 44445567889999999988665 58999999876543321 112222233333 78888888753 3588999
Q ss_pred cCCCCeeEEEEcc----------CC-----CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC----
Q psy4876 404 VRSRDHKVALLQN----------HT-----QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR---- 464 (609)
Q Consensus 404 ~~~~~~~~~~~~~----------h~-----~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~---- 464 (609)
..+.. -..+.. +. ..-..+...++|+.++.++.++.+.++|..+... ........
T Consensus 154 ~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 227 (387)
T d1k3ia3 154 PSSKT--WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV----KSAGKRQSNRGV 227 (387)
T ss_dssp TTTTE--EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE----EEEEECEETTEE
T ss_pred CCCCc--eeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE----eeccccccCccc
Confidence 88753 122211 00 0011123345778888887777788887766521 11110100
Q ss_pred Cc--ccEEEEEEcCCCCcEEEEEeccC------CCeEEEEECCCC---ceeEEEc----CCCCeEEEEEcCCCCeEEEEE
Q psy4876 465 HQ--AAVKAIAWCPWSPNVLASGGGTA------DRHIYFWNVSSG---ACLDSID----TKSQVCALLWNSDYKELVSAH 529 (609)
Q Consensus 465 h~--~~V~~l~~sp~~~~llasggGs~------Dg~I~iwd~~t~---~~~~~~~----~~~~v~sl~~s~~g~~l~~~s 529 (609)
+. ..-.++.+......+++.||+.. .....+.++... ....... ....-.+....++++.+++.
T Consensus 228 ~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~G- 306 (387)
T d1k3ia3 228 APDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITG- 306 (387)
T ss_dssp CCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEEC-
T ss_pred CcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEEC-
Confidence 00 11123334443446777775321 123344443321 1111111 11123355666888877663
Q ss_pred ecC----------CCeEEEEECCCCceEEEEeC-CCCCE--EEEEEeCCCCEEEEEEC
Q psy4876 530 GFA----------QNQLIIWKYPSLVKVAELHG-HSARV--LNLAMSPDETTVLSAGA 574 (609)
Q Consensus 530 G~~----------dg~I~Iwd~~~~~~~~~l~~-h~~~V--~~l~~spdg~~L~s~s~ 574 (609)
|.. ...+.+||..+.+-. .+.. ...+. ....+.+||+.|+.|+.
T Consensus 307 G~~~~~~~~~~~~~~~ve~Ydp~~~~W~-~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 307 GQRRGIPFEDSTPVFTPEIYVPEQDTFY-KQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp CBSBCCTTCCCSBCCCCEEEEGGGTEEE-ECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcccCccCCCCcEeceEEEEECCCCeEE-ECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 321 125788997655321 1111 11111 22345789999999884
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.23 E-value=0.13 Score=51.52 Aligned_cols=250 Identities=10% Similarity=0.071 Sum_probs=134.9
Q ss_pred eEEEEEccCCCEEEEEeC-C----CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecC--------------
Q psy4876 338 VCSVAWIQEGYMLGVGTS-L----GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRC-------------- 396 (609)
Q Consensus 338 V~~v~~spdg~~Lasgs~-d----g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~d-------------- 396 (609)
+..++++|+++++|.+-+ + ..|+++|+.+++.+...- .......++| ++..|+-...+
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~ 205 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence 456788999999886533 2 379999999998764221 1122256778 45555543321
Q ss_pred --CeEEEEEcCCCCee-EEEEccC--CCCeEEEEEccCCCEEEEEeC---CCc--EEEEeCCCCCCCC--CccceEeecC
Q psy4876 397 --GNIVHHDVRSRDHK-VALLQNH--TQEVCGLKWSPDGRYLASGGN---DNL--LNIWSGVPGQHTF--STQPIHSLSR 464 (609)
Q Consensus 397 --g~I~iwd~~~~~~~-~~~~~~h--~~~V~~l~~spdg~~lasgs~---Dg~--I~iwd~~~~~~~~--~~~~~~~~~~ 464 (609)
..|..|.+.+.... ...+... ...+..+..+.++++++.... +.. +.+.|+....... .......+..
T Consensus 206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 285 (430)
T d1qfma1 206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN 285 (430)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecc
Confidence 25788888765422 2333332 335677888999998765432 233 4455554321110 0011222222
Q ss_pred CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce---eEEEcCC-CCeEEEEEcCCCCeEEEEE-ecCCCeEEEE
Q psy4876 465 HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC---LDSIDTK-SQVCALLWNSDYKELVSAH-GFAQNQLIIW 539 (609)
Q Consensus 465 h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~---~~~~~~~-~~v~sl~~s~~g~~l~~~s-G~~dg~I~Iw 539 (609)
....+.-+.. ..+..++.+.-+..++.|...++..... ...+..+ ..+..-.+...+.+|+... -.....|+++
T Consensus 286 ~~~~~~~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~ 364 (430)
T d1qfma1 286 FEGEYDYVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH 364 (430)
T ss_dssp SSSCEEEEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred cccceEEEec-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEE
Confidence 2333333332 2232334443233457888888875432 2223333 3454444555555555432 2233468999
Q ss_pred ECCCCceEEEEeCCCCCEEEEEEeCCCCEEE-EEEC---CCCEEEEEcCCCccc
Q psy4876 540 KYPSLVKVAELHGHSARVLNLAMSPDETTVL-SAGA---DETLRLWKIFEKVKS 589 (609)
Q Consensus 540 d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-s~s~---Dg~I~iWdl~~~~~~ 589 (609)
+..++..........+.|..+...++...+. +.+. -.++.-+|+.+++..
T Consensus 365 ~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~ 418 (430)
T d1qfma1 365 DLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELE 418 (430)
T ss_dssp ETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCC
T ss_pred ECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcc
Confidence 9988876655544455666665556555443 3222 267888999887643
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.19 E-value=0.089 Score=55.04 Aligned_cols=81 Identities=9% Similarity=-0.139 Sum_probs=52.6
Q ss_pred CeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCC-CCEEEEEEeCCCC-E
Q psy4876 491 RHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHS-ARVLNLAMSPDET-T 568 (609)
Q Consensus 491 g~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~-~ 568 (609)
|.|.-+|+.+|+.+-.........+-.....+..+++ |..|+.++-+|..+|+.+.++.-.. ..-.-+.|..||+ |
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~--G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqY 521 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWY--ATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY 521 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEE--ECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEE
Confidence 5788899999998877664433222222334566666 6689999999999999998875321 1112245555886 5
Q ss_pred EEEEE
Q psy4876 569 VLSAG 573 (609)
Q Consensus 569 L~s~s 573 (609)
|++..
T Consensus 522 i~v~~ 526 (571)
T d2ad6a1 522 IGSMY 526 (571)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 54443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.19 E-value=0.089 Score=49.57 Aligned_cols=179 Identities=13% Similarity=0.178 Sum_probs=115.9
Q ss_pred EEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec---CCCCeEEEEEccCCCEEE
Q psy4876 275 IDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE---GNENVCSVAWIQEGYMLG 351 (609)
Q Consensus 275 l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---h~~~V~~v~~spdg~~La 351 (609)
-.|-.+..|+.-.+..||-|+++... ...++.+.. ....|..-..++++++++
T Consensus 108 WkWis~~~L~lVT~taVYHW~~~g~s------------------------~P~k~fdR~~~L~~~QIInY~~d~~~kW~~ 163 (327)
T d1utca2 108 WKWISLNTVALVTDNAVYHWSMEGES------------------------QPVKMFDRHSSLAGCQIINYRTDAKQKWLL 163 (327)
T ss_dssp EEESSSSEEEEECSSEEEEEESSSSC------------------------CCEEEEECCGGGTTCEEEEEEECTTSCEEE
T ss_pred EEecCCCEEEEEcCCceEEEcccCCC------------------------CchhhhhhcccccCceEEEEEECCCCCEEE
Confidence 67888888998899999999996521 122222221 345677777777887776
Q ss_pred EEe-------CCCeEEEEeCCCCeeEEEecCCCCceEEEEecC-----CEEEEEec---CCeEEEEEcCCCCe---e---
Q psy4876 352 VGT-------SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT-----YILSSGSR---CGNIVHHDVRSRDH---K--- 410 (609)
Q Consensus 352 sgs-------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~-----~~L~sgs~---dg~I~iwd~~~~~~---~--- 410 (609)
..+ -.|.+++|..+. +.-+.++||.+....+..+| .+++.+.+ .+.+++-++..... .
T Consensus 164 l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~k 242 (327)
T d1utca2 164 LTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK 242 (327)
T ss_dssp EEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCC
T ss_pred EEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcc
Confidence 533 237889999876 55677888887777776643 24443332 36788888865321 0
Q ss_pred --EEEEc---cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 411 --VALLQ---NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 411 --~~~~~---~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
+..+. .-.+-..++..++.-..+..-+.-|.|++||+.++ .++..-+-....|...+-+.....+++.
T Consensus 243 k~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg------t~i~~nRIs~~~iF~~a~~~~~~Gi~~V 315 (327)
T d1utca2 243 KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG------TCIYMNRISGETIFVTAPHEATAGIIGV 315 (327)
T ss_dssp EEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEEETTTTEEEEE
T ss_pred eeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccc------cEEEEeecCCCceEEeccCCCCceEEEE
Confidence 11111 12345567888888888888999999999999999 6666555555555544444444345544
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.12 E-value=0.069 Score=55.95 Aligned_cols=236 Identities=8% Similarity=-0.030 Sum_probs=135.9
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCC----ceE--EEEecCCEEEEEe------cCCeEEEEEcCCCCeeEEEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDV----RVG--ALAWNTYILSSGS------RCGNIVHHDVRSRDHKVALL 414 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~----~V~--~l~~~~~~L~sgs------~dg~I~iwd~~~~~~~~~~~ 414 (609)
+..|+.++.||.|.-.|.++|+.+........ .++ -+.++ ..++.+. .+|.|.-+|+.+++ .+..+
T Consensus 115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~-~~W~~ 192 (571)
T d2ad6a1 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGE-LKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCC-EEEEE
T ss_pred CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCc-EEEEE
Confidence 34677889999999999999988766542211 111 12233 4444544 36789999999985 44443
Q ss_pred ccCC-------------------------------------CCe-EEEEEccCCCEEEEEeC----------------CC
Q psy4876 415 QNHT-------------------------------------QEV-CGLKWSPDGRYLASGGN----------------DN 440 (609)
Q Consensus 415 ~~h~-------------------------------------~~V-~~l~~spdg~~lasgs~----------------Dg 440 (609)
.... ..+ ...++.++..++..+.. ..
T Consensus 193 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~ 272 (571)
T d2ad6a1 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred eccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccccc
Confidence 2110 111 23456666666665544 24
Q ss_pred cEEEEeCCCCCCCCCccceEeecCCcc---------cEEEEEEcCCCCc--EEEEEeccCCCeEEEEECCCCceeEEEcC
Q psy4876 441 LLNIWSGVPGQHTFSTQPIHSLSRHQA---------AVKAIAWCPWSPN--VLASGGGTADRHIYFWNVSSGACLDSIDT 509 (609)
Q Consensus 441 ~I~iwd~~~~~~~~~~~~~~~~~~h~~---------~V~~l~~sp~~~~--llasggGs~Dg~I~iwd~~t~~~~~~~~~ 509 (609)
.|.-.|+++++ .+..++.... ......+..++.. +++.+ +.+|.++++|..+|+.+.....
T Consensus 273 svvAld~~TG~------~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~--~k~G~l~vlDr~tG~~i~~~~~ 344 (571)
T d2ad6a1 273 TIWGRDLDTGM------AKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHI--DRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp EEEEEETTTCC------EEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEE--CTTSEEEEEETTTCCEEEEEES
T ss_pred ceeeeeccchh------heecccccCccccccccccccceeeeeccCccccceeec--cccceEEEEecCCCcEeeeecc
Confidence 57778888883 3333332111 1111112223332 33443 5899999999999998754321
Q ss_pred CC----------------------------------------CeEEEEEcCCCCeEEEEEec------------------
Q psy4876 510 KS----------------------------------------QVCALLWNSDYKELVSAHGF------------------ 531 (609)
Q Consensus 510 ~~----------------------------------------~v~sl~~s~~g~~l~~~sG~------------------ 531 (609)
.. .-...+|+|+...+++....
T Consensus 345 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~ 424 (571)
T d2ad6a1 345 DPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFF 424 (571)
T ss_dssp STTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred CCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccc
Confidence 00 01125677776666552210
Q ss_pred -----------------CCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhh
Q psy4876 532 -----------------AQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKE 593 (609)
Q Consensus 532 -----------------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~ 593 (609)
..|.|.-+|..+++.+.....- .+..+-.++-.+.+|++++.||.++.+|..+++..=+..
T Consensus 425 ~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~ 502 (571)
T d2ad6a1 425 VGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp CCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cccceeeccccCCcccCCcccEEEeccCCCceeeEcCCC-CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 1246777888888877665321 111111122246688889999999999999988764433
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.94 E-value=0.083 Score=55.16 Aligned_cols=235 Identities=11% Similarity=0.021 Sum_probs=137.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCc------eEEEEecCCEEEEEec------CCeEEEEEcCCCCeeEEEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVR------VGALAWNTYILSSGSR------CGNIVHHDVRSRDHKVALL 414 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~------V~~l~~~~~~L~sgs~------dg~I~iwd~~~~~~~~~~~ 414 (609)
+..++.++.++.|.-.|..+++.+.....+... ..-+.+ ...++.+.. .|.|.-+|..+++ .+..+
T Consensus 117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~-~~W~~ 194 (560)
T d1kv9a2 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGK-LAWRF 194 (560)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCC-EEEEE
T ss_pred CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeee-cCcccccccceeccccceEEEEECCCce-EEeee
Confidence 457888999999999999999988776532211 111122 334444432 3679999999985 44444
Q ss_pred ccC------------------------------CCC-eEEEEEccCCCEEEEEeC-------------------CCcEEE
Q psy4876 415 QNH------------------------------TQE-VCGLKWSPDGRYLASGGN-------------------DNLLNI 444 (609)
Q Consensus 415 ~~h------------------------------~~~-V~~l~~spdg~~lasgs~-------------------Dg~I~i 444 (609)
..- ... -..+++.+...++..+.. ...|.-
T Consensus 195 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivA 274 (560)
T d1kv9a2 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (560)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred eeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEE
Confidence 310 001 112456666666555431 235667
Q ss_pred EeCCCCCCCCCccceEeecC--Cc-------ccEEEEEEcCCCC--cEEEEEeccCCCeEEEEECCCCceeEEEcCCC--
Q psy4876 445 WSGVPGQHTFSTQPIHSLSR--HQ-------AAVKAIAWCPWSP--NVLASGGGTADRHIYFWNVSSGACLDSIDTKS-- 511 (609)
Q Consensus 445 wd~~~~~~~~~~~~~~~~~~--h~-------~~V~~l~~sp~~~--~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~-- 511 (609)
.|+++++ .+..++. |. ....-+....++. .+++.+ ..+|.++++|..+|+.+.......
T Consensus 275 ld~~tG~------~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~--~k~G~~~~lDr~tG~~i~~~~~~~~~ 346 (560)
T d1kv9a2 275 IRPDTGK------LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQA--PKNGFFYVLDRTNGKLISAEKFGKVT 346 (560)
T ss_dssp ECTTTCC------EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC--CTTSEEEEEETTTCCEEEEEESSCCC
T ss_pred ecCCccc------eeEEEeccccccccccccceeeeeeeecCCceeeeeeec--CccceEEEEecCCCcccccccccccc
Confidence 7888773 3322221 21 1111112222332 234443 589999999999999876543211
Q ss_pred -----------------------------------CeEEEEEcCCCCeEEEEEec-------------------------
Q psy4876 512 -----------------------------------QVCALLWNSDYKELVSAHGF------------------------- 531 (609)
Q Consensus 512 -----------------------------------~v~sl~~s~~g~~l~~~sG~------------------------- 531 (609)
.-...+++|+...+++....
T Consensus 347 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (560)
T d1kv9a2 347 WAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFA 426 (560)
T ss_dssp SEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGG
T ss_pred cccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcc
Confidence 11245677777776654310
Q ss_pred ---------CCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhh
Q psy4876 532 ---------AQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKK 592 (609)
Q Consensus 532 ---------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~ 592 (609)
..|.|.-||+.+++.+...... .....-.+.-.|.+|+.|+.||.++.+|..+++..=+.
T Consensus 427 ~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~ 495 (560)
T d1kv9a2 427 DATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF 495 (560)
T ss_dssp GCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cccCCCCcccccceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEE
Confidence 1256888999999888776422 22222223335778889999999999999999876443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.83 E-value=0.23 Score=51.55 Aligned_cols=81 Identities=7% Similarity=0.011 Sum_probs=55.7
Q ss_pred CeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCC-EEEEEEeCCCC-E
Q psy4876 491 RHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSAR-VLNLAMSPDET-T 568 (609)
Q Consensus 491 g~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~-~ 568 (609)
|.|.-||+.+|+.+-.+.......+-...-.+.++++ |..||.++-+|..+|+.+.++...... -.-+.+.-||+ +
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~--G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy 515 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ--GTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEE--ECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 6788999999999888776554443334455667766 668999999999999999888642211 11245556886 5
Q ss_pred EEEEE
Q psy4876 569 VLSAG 573 (609)
Q Consensus 569 L~s~s 573 (609)
|+..+
T Consensus 516 v~v~a 520 (560)
T d1kv9a2 516 VAIMA 520 (560)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55444
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.75 E-value=0.4 Score=50.14 Aligned_cols=237 Identities=11% Similarity=0.014 Sum_probs=138.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCC----ceE-EEEecCCEEEEEec------CCeEEEEEcCCCCeeEEEEc
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDV----RVG-ALAWNTYILSSGSR------CGNIVHHDVRSRDHKVALLQ 415 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~----~V~-~l~~~~~~L~sgs~------dg~I~iwd~~~~~~~~~~~~ 415 (609)
+.+|+.++.|+.|.-.|.++++.+..+..... .++ .-...+..++.|.. .|.|.-+|..+++ .+..+.
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~-~~W~~~ 199 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGE-QVWRAY 199 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCC-EEEEEE
T ss_pred ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCc-EEEEee
Confidence 35788899999999999999998887753211 111 11123455556543 4889999999985 454433
Q ss_pred cCC-------------------------------------C-CeEEEEEccCCCEEEEEeCC----------------Cc
Q psy4876 416 NHT-------------------------------------Q-EVCGLKWSPDGRYLASGGND----------------NL 441 (609)
Q Consensus 416 ~h~-------------------------------------~-~V~~l~~spdg~~lasgs~D----------------g~ 441 (609)
... . .-..+++.+...++..+..+ ..
T Consensus 200 t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~s 279 (596)
T d1w6sa_ 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT 279 (596)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred ccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccc
Confidence 110 0 11234556666666555332 34
Q ss_pred EEEEeCCCCCCCCCccceEeecC--Cc-------ccEEEEEE-cCCCC--cEEEEEeccCCCeEEEEECCCCceeEEEcC
Q psy4876 442 LNIWSGVPGQHTFSTQPIHSLSR--HQ-------AAVKAIAW-CPWSP--NVLASGGGTADRHIYFWNVSSGACLDSIDT 509 (609)
Q Consensus 442 I~iwd~~~~~~~~~~~~~~~~~~--h~-------~~V~~l~~-sp~~~--~llasggGs~Dg~I~iwd~~t~~~~~~~~~ 509 (609)
|.-.|+++++ .+..++. |. .....+.. ..++. .+++.. +.+|.+.++|..+|+.+.....
T Consensus 280 ivAlD~~TG~------~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~--~k~G~~~vlDr~tG~~i~~~~~ 351 (596)
T d1w6sa_ 280 IFGRDADTGE------AKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHP--DRNGIVYTLDRTDGALVSANKL 351 (596)
T ss_dssp EEEEETTTCC------EEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEE--CTTSEEEEEETTTCCEEEEEES
T ss_pred cccccccccc------ccccccceeccccCCccccceeeeeccccccccccceecc--ccccceeeecCCCCceeeeccc
Confidence 7778888883 3333321 21 11111111 22333 244444 5889999999999998754321
Q ss_pred CC----------------------------------------CeEEEEEcCCCCeEEEEEe-------------------
Q psy4876 510 KS----------------------------------------QVCALLWNSDYKELVSAHG------------------- 530 (609)
Q Consensus 510 ~~----------------------------------------~v~sl~~s~~g~~l~~~sG------------------- 530 (609)
.. .-...+++|+...+++...
T Consensus 352 ~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~ 431 (596)
T d1w6sa_ 352 DDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFF 431 (596)
T ss_dssp STTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccc
Confidence 10 0012356666555544210
Q ss_pred ------------------cCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhh
Q psy4876 531 ------------------FAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKK 592 (609)
Q Consensus 531 ------------------~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~ 592 (609)
..-|.|.-||..+++.+.... +...+..-.++-.|.+|+.|+.||.++.+|..+++..=+.
T Consensus 432 ~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~ 510 (596)
T d1w6sa_ 432 VGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKF 510 (596)
T ss_dssp CCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cccccccccCcccCcccCCCcceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEE
Confidence 001567788888888776543 2222222223346778889999999999999999876444
Q ss_pred h
Q psy4876 593 E 593 (609)
Q Consensus 593 ~ 593 (609)
.
T Consensus 511 ~ 511 (596)
T d1w6sa_ 511 K 511 (596)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.61 E-value=0.38 Score=49.97 Aligned_cols=234 Identities=9% Similarity=0.035 Sum_probs=132.3
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCC---ceE----EEEecCCEEEEEec------CCeEEEEEcCCCCeeEEEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDV---RVG----ALAWNTYILSSGSR------CGNIVHHDVRSRDHKVALL 414 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~---~V~----~l~~~~~~L~sgs~------dg~I~iwd~~~~~~~~~~~ 414 (609)
..++.++.|+.+.-.|..+|+.+........ .+. .+.+ ...+++++. .|.|.-+|..+++ .+..+
T Consensus 129 ~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~-~~W~~ 206 (573)
T d1kb0a2 129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAETGE-RKWRW 206 (573)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCC-EEEEE
T ss_pred CcEEEEecccceeeeccccccceecccCccCCcceEEeecceEEE-eccEEEeeccccccccceEEEEecCCcc-ceeee
Confidence 4677788899999999999988765543211 111 1222 344445432 4689999999985 44443
Q ss_pred ccCC-------------------------------CCe-EEEEEccCCCEEEEEeC-------------------CCcEE
Q psy4876 415 QNHT-------------------------------QEV-CGLKWSPDGRYLASGGN-------------------DNLLN 443 (609)
Q Consensus 415 ~~h~-------------------------------~~V-~~l~~spdg~~lasgs~-------------------Dg~I~ 443 (609)
.... ..+ ...++.++..++..+.. ...|.
T Consensus 207 ~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svv 286 (573)
T d1kb0a2 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (573)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred eeccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEE
Confidence 2110 111 12455565555544321 12455
Q ss_pred EEeCCCCCCCCCccceEeecC--C-------cccEEEEEEcCCCCc--EEEEEeccCCCeEEEEECCCCceeEEEcCCC-
Q psy4876 444 IWSGVPGQHTFSTQPIHSLSR--H-------QAAVKAIAWCPWSPN--VLASGGGTADRHIYFWNVSSGACLDSIDTKS- 511 (609)
Q Consensus 444 iwd~~~~~~~~~~~~~~~~~~--h-------~~~V~~l~~sp~~~~--llasggGs~Dg~I~iwd~~t~~~~~~~~~~~- 511 (609)
-.|+++++ ....++. | ..+........++.. +++. ++.+|.++++|..+|+.+.......
T Consensus 287 Ald~~tG~------~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~--~~k~G~l~~lDr~tGe~~~~~~~~~~ 358 (573)
T d1kb0a2 287 ALDPDTGK------YKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILH--APKNGFFFVLDRTNGKFISAKNFVPV 358 (573)
T ss_dssp EECTTTCC------EEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEE--CCTTSEEEEEETTTCCEEEEEESSCC
T ss_pred Eecccchh------eeecccccCcccccccccceeeecceecCCCceeeeee--ccccceeEEecccccccccccccccc
Confidence 56666663 2222211 1 111112222222322 3333 3589999999999999876543110
Q ss_pred -----------------------------------CeEEEEEcCCCCeEEEEEec-------------------------
Q psy4876 512 -----------------------------------QVCALLWNSDYKELVSAHGF------------------------- 531 (609)
Q Consensus 512 -----------------------------------~v~sl~~s~~g~~l~~~sG~------------------------- 531 (609)
.-..++++|+...+++....
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 438 (573)
T d1kb0a2 359 NWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT 438 (573)
T ss_dssp SSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGG
T ss_pred ccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCcccccc
Confidence 11234677777666653210
Q ss_pred ----------------CCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhh
Q psy4876 532 ----------------AQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKK 592 (609)
Q Consensus 532 ----------------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~ 592 (609)
.-|.|.-||..+++.+....... +...-..+-.|.+|++|+.||.++.+|..+++..=+.
T Consensus 439 ~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~ 514 (573)
T d1kb0a2 439 GWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA 514 (573)
T ss_dssp TCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccccccccccCCCCCCCcccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEE
Confidence 01457778888888887765332 2222223346788999999999999999999976443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.50 E-value=0.15 Score=49.58 Aligned_cols=112 Identities=17% Similarity=0.123 Sum_probs=70.5
Q ss_pred CeEEEEEccCCCEEEEEeCC-----C------eEEEEeCCCCeeE--EEe-cCCCCceEEEEe--cCCEEEEEecC-CeE
Q psy4876 337 NVCSVAWIQEGYMLGVGTSL-----G------TVQLWDVSAKKKC--RTM-DGHDVRVGALAW--NTYILSSGSRC-GNI 399 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~d-----g------~I~iwd~~~~~~~--~~l-~~h~~~V~~l~~--~~~~L~sgs~d-g~I 399 (609)
.+.......+|+.++.|+.+ + .+.+||..+++-. ..+ ..|.......++ ++.+++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence 33444455688888888753 1 3789999887532 222 223333333444 78888888765 579
Q ss_pred EEEEcCCCCeeEEEEc--cCCCCeEEEEEccCCCEEEEEeCC------CcEEEEeCCCC
Q psy4876 400 VHHDVRSRDHKVALLQ--NHTQEVCGLKWSPDGRYLASGGND------NLLNIWSGVPG 450 (609)
Q Consensus 400 ~iwd~~~~~~~~~~~~--~h~~~V~~l~~spdg~~lasgs~D------g~I~iwd~~~~ 450 (609)
.+||..+..- .... .....-.+.+..+||++++.|+.+ ..+.+||..+.
T Consensus 101 ~~yd~~~~~w--~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~ 157 (387)
T d1k3ia3 101 SLYDSSSDSW--IPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 157 (387)
T ss_dssp EEEEGGGTEE--EECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred eEecCccCcc--cccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence 9999987532 1221 112233466778899999998753 36899998875
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.13 E-value=0.42 Score=49.77 Aligned_cols=60 Identities=13% Similarity=0.000 Sum_probs=43.3
Q ss_pred CeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 534 NQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 534 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
|.|.-+|+.+++.+.....+. ++..-.++-.|.+|++|+.||.++.+|..+++..=+...
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~ 525 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence 568888888988887775432 222222345677889999999999999999997644333
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=95.95 E-value=1.2 Score=46.10 Aligned_cols=79 Identities=14% Similarity=0.072 Sum_probs=52.9
Q ss_pred CeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCE-EEEEEeCCCC-E
Q psy4876 491 RHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARV-LNLAMSPDET-T 568 (609)
Q Consensus 491 g~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~-~ 568 (609)
|.|.-||+.+|+.+-.+........=..+-.+..+++ |..|+.++.||..+|+.+.++....... .-+.|.-||+ +
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~--G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQY 534 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQ--GTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEE--ECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 4688899999998887765544333233446777776 6689999999999999998886422110 1144555886 4
Q ss_pred EEE
Q psy4876 569 VLS 571 (609)
Q Consensus 569 L~s 571 (609)
|+.
T Consensus 535 v~v 537 (573)
T d1kb0a2 535 VSV 537 (573)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=95.82 E-value=1.3 Score=45.84 Aligned_cols=76 Identities=11% Similarity=-0.077 Sum_probs=52.5
Q ss_pred CeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC----CCCEEEEEEeCCC
Q psy4876 491 RHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH----SARVLNLAMSPDE 566 (609)
Q Consensus 491 g~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h----~~~V~~l~~spdg 566 (609)
|.|.-||+.+|+.+-.......+.+-..+..+..++. |..||.++-+|..+|+.+.++... ..+ +.|.-||
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~--G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P---~tY~~dG 527 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFY--GTLDGYLKARDSDTGDLLWKFKIPSGAIGYP---MTYTHKG 527 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETT
T ss_pred ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEE--ECCCCeEEEEECCCCcEeeEEECCCCcccCC---eEEEECC
Confidence 5788899999998876654443333333445677766 668999999999999999888532 233 3444577
Q ss_pred C-EEEE
Q psy4876 567 T-TVLS 571 (609)
Q Consensus 567 ~-~L~s 571 (609)
+ ||+.
T Consensus 528 kQYvav 533 (596)
T d1w6sa_ 528 TQYVAI 533 (596)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 6 4543
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.81 E-value=0.63 Score=45.43 Aligned_cols=180 Identities=13% Similarity=0.036 Sum_probs=105.2
Q ss_pred EEEEEecCC-CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEE
Q psy4876 272 LNLIDWSHF-NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYML 350 (609)
Q Consensus 272 v~~l~wsp~-~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~L 350 (609)
++.|+.++. |+++++....+.|-....-. .................+ ..|..++|+.+ .|
T Consensus 39 ~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~--------------~~~~~~~~~~~~~~~~~i---p~v~~vafs~d--~l 99 (381)
T d1xipa_ 39 LQNLDISNSKSLFVAASGSKAVVGELQLLR--------------DHITSDSTPLTFKWEKEI---PDVIFVCFHGD--QV 99 (381)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHH--------------HHHHSSSCCCCCSEEEEC---TTEEEEEEETT--EE
T ss_pred cceEEEeCCCCEEEEECCCEEEEEEHHHHH--------------HHhhccCCCCcceeccCC---CCeEEEEeeCC--EE
Confidence 567999886 67777777778887654300 000000000122222222 36889999744 56
Q ss_pred EEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEc-----cCCCCeEEEE
Q psy4876 351 GVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQ-----NHTQEVCGLK 425 (609)
Q Consensus 351 asgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~-----~h~~~V~~l~ 425 (609)
++... +.+..++...-........-...+..+.+++..++....+|.+.++++...... .... .-.+.+.+++
T Consensus 100 ~v~~~-~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~-~~~~~v~~~~~~~~~~~v~ 177 (381)
T d1xipa_ 100 LVSTR-NALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTK-QLAQNVTSFDVTNSQLAVL 177 (381)
T ss_dssp EEEES-SEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE-EEEESEEEEEECSSEEEEE
T ss_pred EEEeC-CCEEEEEeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccc-cccCCcceEEecCCceEEE
Confidence 66544 668888877654444444455678899999888888999999999999876421 1111 1235678888
Q ss_pred EccCCCEEEEEeCCCcEEEE-eCCCCCCCCCccceEeecCCcccEEEEEEcCCCC
Q psy4876 426 WSPDGRYLASGGNDNLLNIW-SGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSP 479 (609)
Q Consensus 426 ~spdg~~lasgs~Dg~I~iw-d~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 479 (609)
|++.|..++++..++ ..+- ++... ..+.........|.+|.|-....
T Consensus 178 ws~kgkq~v~~~g~~-~q~k~~i~~~------~~~~~p~~~~~~v~sI~WL~~~~ 225 (381)
T d1xipa_ 178 LKDRSFQSFAWRNGE-MEKQFEFSLP------SELEELPVEEYSPLSVTILSPQD 225 (381)
T ss_dssp ETTSCEEEEEEETTE-EEEEEEECCC------HHHHTSCTTTSEEEEEEESSSSE
T ss_pred EeCCcEEEEEeCCCc-eeeccCCCCc------cccCCCcCCCcceeEEEEecCce
Confidence 888888887764332 2221 22111 11111112344688999986553
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.18 E-value=1.5 Score=42.17 Aligned_cols=198 Identities=14% Similarity=0.199 Sum_probs=115.6
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe------cC--CEEEEEe-cC---CeEEEEEcCCCCeeEE
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW------NT--YILSSGS-RC---GNIVHHDVRSRDHKVA 412 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~------~~--~~L~sgs-~d---g~I~iwd~~~~~~~~~ 412 (609)
|+..+++.....+-|.+||++ |+.+..+.. +++..|.. ++ ..|+.++ ++ -.|.+|.+......+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence 344666666666669999985 777777653 45555543 22 2344444 32 3688888764333343
Q ss_pred EEccC-------CCCeEEEEE--cc-CCC-EEEEEeCCCcEEEEeCCCCC-CCCCccceEeecCCcccEEEEEEcCCCCc
Q psy4876 413 LLQNH-------TQEVCGLKW--SP-DGR-YLASGGNDNLLNIWSGVPGQ-HTFSTQPIHSLSRHQAAVKAIAWCPWSPN 480 (609)
Q Consensus 413 ~~~~h-------~~~V~~l~~--sp-dg~-~lasgs~Dg~I~iwd~~~~~-~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 480 (609)
.+... ...+.++|+ ++ +|. ++++...+|.+..|.+.... .......++.+.. ...+..+.+......
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~ 193 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGS 193 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCCc
Confidence 33321 234677777 55 354 46667778999888764321 1122245555543 456889999988777
Q ss_pred EEEEEeccCCCeEEEEECC--CC---ceeEEEcC---CCCeEEEEEc--CCCC-eEEEEEecCCCeEEEEECCC-CceEE
Q psy4876 481 VLASGGGTADRHIYFWNVS--SG---ACLDSIDT---KSQVCALLWN--SDYK-ELVSAHGFAQNQLIIWKYPS-LVKVA 548 (609)
Q Consensus 481 llasggGs~Dg~I~iwd~~--t~---~~~~~~~~---~~~v~sl~~s--~~g~-~l~~~sG~~dg~I~Iwd~~~-~~~~~ 548 (609)
|+++- ++.-|..++.. .+ ..+..... ...+..|+.- .++. +|+++ ...+++..|||... ...+.
T Consensus 194 LyisE---E~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivS-sQG~n~f~vydr~~~~~~~g 269 (353)
T d1h6la_ 194 LYIAE---EDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLAS-SQGNSSYAIYERQGQNKYVA 269 (353)
T ss_dssp EEEEE---TTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEE-EGGGTEEEEEESSTTCCEEE
T ss_pred EEEec---CccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEE-cCCCCeEEEEecCCCccccc
Confidence 77753 56666666654 12 22222222 2367777644 3444 55554 34689999999876 35565
Q ss_pred EE
Q psy4876 549 EL 550 (609)
Q Consensus 549 ~l 550 (609)
.|
T Consensus 270 ~F 271 (353)
T d1h6la_ 270 DF 271 (353)
T ss_dssp EE
T ss_pred eE
Confidence 55
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.77 E-value=2.2 Score=42.00 Aligned_cols=245 Identities=12% Similarity=0.059 Sum_probs=125.3
Q ss_pred ceeEEEEEecCCC-eEEEEc--CC----eEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEE
Q psy4876 269 DYYLNLIDWSHFN-VLAVAL--GG----SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSV 341 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~--dg----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v 341 (609)
.+++..+++||++ .++.+. +| .|++.|+.+ ++.... .+. ......+
T Consensus 124 ~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~t-------------------------g~~~~~-~i~-~~~~~~~ 176 (430)
T d1qfma1 124 TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG-------------------------AKELPD-VLE-RVKFSCM 176 (430)
T ss_dssp CEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT-------------------------TEEEEE-EEE-EECSCCE
T ss_pred cceecceEecCCCCEEEEEeccccCchheeEEeccCc-------------------------ceeccc-ccc-cccccce
Confidence 4556678889997 555433 33 799999998 554321 121 1223568
Q ss_pred EEccCCCEEEEEeCC----------------CeEEEEeCCCCe--eEEEecCCC--CceEEEEe--cCCEEEEEec---C
Q psy4876 342 AWIQEGYMLGVGTSL----------------GTVQLWDVSAKK--KCRTMDGHD--VRVGALAW--NTYILSSGSR---C 396 (609)
Q Consensus 342 ~~spdg~~Lasgs~d----------------g~I~iwd~~~~~--~~~~l~~h~--~~V~~l~~--~~~~L~sgs~---d 396 (609)
+|.+|++.|+....+ ..|.+|.+.+.. ....+.... ..+..+.. ++.+++.... +
T Consensus 177 ~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~ 256 (430)
T d1qfma1 177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD 256 (430)
T ss_dssp EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS
T ss_pred EEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCC
Confidence 999999877654432 257777776652 233344333 23444444 5666654332 2
Q ss_pred Ce--EEEEEcCCCCe-------eEEEEccCCCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCCCCCCCCccceEee-c
Q psy4876 397 GN--IVHHDVRSRDH-------KVALLQNHTQEVCGLKWSPDGRYLASGGN---DNLLNIWSGVPGQHTFSTQPIHSL-S 463 (609)
Q Consensus 397 g~--I~iwd~~~~~~-------~~~~~~~h~~~V~~l~~spdg~~lasgs~---Dg~I~iwd~~~~~~~~~~~~~~~~-~ 463 (609)
+. +.+.|+..... ...........+.-+. +.++.+++.... ++.|...++..... .....+ .
T Consensus 257 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~----~~w~~vi~ 331 (430)
T d1qfma1 257 PVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEE----SKWKVLVP 331 (430)
T ss_dssp SCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCG----GGCEEEEC
T ss_pred ccEEEEEeeCCCcccccccccceeEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCcc----ccceEEec
Confidence 33 44445443211 1222332233333222 223333333322 35677777765421 111223 3
Q ss_pred CCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEE-Ee-cCCCeEEEEE
Q psy4876 464 RHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSA-HG-FAQNQLIIWK 540 (609)
Q Consensus 464 ~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~-sG-~~dg~I~Iwd 540 (609)
.+...+..-.+...+..+++..--..-..|+++++.++......... +.+..+...++...+... ++ ..-.+++-+|
T Consensus 332 ~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~D 411 (430)
T d1qfma1 332 EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (430)
T ss_dssp CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred ccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEE
Confidence 34444544344444445665542112356899999888765544332 345555555555555442 22 1236788888
Q ss_pred CCCCc
Q psy4876 541 YPSLV 545 (609)
Q Consensus 541 ~~~~~ 545 (609)
+.+++
T Consensus 412 l~t~~ 416 (430)
T d1qfma1 412 LTKEE 416 (430)
T ss_dssp TTSSS
T ss_pred CCCCC
Confidence 87764
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.62 E-value=1.7 Score=41.74 Aligned_cols=187 Identities=10% Similarity=0.108 Sum_probs=111.0
Q ss_pred CEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEcc------CCCEEEEEeC--C--CcEEEEeCCCCCCCCCcc
Q psy4876 388 YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSP------DGRYLASGGN--D--NLLNIWSGVPGQHTFSTQ 457 (609)
Q Consensus 388 ~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp------dg~~lasgs~--D--g~I~iwd~~~~~~~~~~~ 457 (609)
.+++.....+-|++||+.. ..+..+. .+.++.|..-. ...-|+++++ + ..|.+|.+.... .
T Consensus 41 SlI~gTdK~~Gl~vYdL~G--~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~-----~ 111 (353)
T d1h6la_ 41 SKLITTNKKSGLAVYSLEG--KMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN-----G 111 (353)
T ss_dssp CEEEEEETTSCCEEEETTC--CEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTT-----T
T ss_pred cEEEEEcCcCCEEEEcCCC--cEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcc-----c
Confidence 4666667777799999963 3455443 35666665432 2223555553 2 367788775321 1
Q ss_pred ceEeecCC-------cccEEEEEE--cCCCCcEEEEEeccCCCeEEEEECC---CC----ceeEEEcCCCCeEEEEEcCC
Q psy4876 458 PIHSLSRH-------QAAVKAIAW--CPWSPNVLASGGGTADRHIYFWNVS---SG----ACLDSIDTKSQVCALLWNSD 521 (609)
Q Consensus 458 ~~~~~~~h-------~~~V~~l~~--sp~~~~llasggGs~Dg~I~iwd~~---t~----~~~~~~~~~~~v~sl~~s~~ 521 (609)
.+..+... ...+..+|+ ++....+.+... ..+|.+..|.+. .+ +.++.+....++..|.+...
T Consensus 112 ~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~-~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde 190 (353)
T d1h6la_ 112 TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVT-GKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDE 190 (353)
T ss_dssp EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEE-CSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETT
T ss_pred ccccccccccccccccCcceEEEEEecCCCCeEEEEEE-cCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCC
Confidence 22222211 123556666 665544433332 378888888763 33 35667778889999999999
Q ss_pred CCeEEEEEecCCCeEEEEECC-----CCceEEEEeC--CCCCEEEEEEeC--CC--CEEEEEECCCCEEEEEcCCC
Q psy4876 522 YKELVSAHGFAQNQLIIWKYP-----SLVKVAELHG--HSARVLNLAMSP--DE--TTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 522 g~~l~~~sG~~dg~I~Iwd~~-----~~~~~~~l~~--h~~~V~~l~~sp--dg--~~L~s~s~Dg~I~iWdl~~~ 586 (609)
...|++ +.++..|..+++. ....+....+ ..+.+..|+.-. ++ -+|+|.-.|++..|||....
T Consensus 191 ~~~Lyi--sEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 191 YGSLYI--AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp TTEEEE--EETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred CCcEEE--ecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 999998 4466666555543 1222222222 356678887543 33 34455556889999998764
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.60 E-value=0.33 Score=44.69 Aligned_cols=217 Identities=8% Similarity=-0.002 Sum_probs=95.9
Q ss_pred eEEEEeCCCCeeEE--EecCCCCceEEEEecCCEEEEEecC---------CeEEEEEcCCCCeeEEEEcc--C-CCCeEE
Q psy4876 358 TVQLWDVSAKKKCR--TMDGHDVRVGALAWNTYILSSGSRC---------GNIVHHDVRSRDHKVALLQN--H-TQEVCG 423 (609)
Q Consensus 358 ~I~iwd~~~~~~~~--~l~~h~~~V~~l~~~~~~L~sgs~d---------g~I~iwd~~~~~~~~~~~~~--h-~~~V~~ 423 (609)
.|.+||+.+++-.. .+.........+..++.+++.|+.. ..+.+||..+.. ...+.. . ...-.+
T Consensus 20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~--w~~~~~~p~~r~~~~~ 97 (288)
T d1zgka1 20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ--WSPCAPMSVPRNRIGV 97 (288)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTE--EEECCCCSSCCBTCEE
T ss_pred eEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhccccccc--ccccccccceecceec
Confidence 58899999875333 2332222334444567777776631 346777876542 111111 0 111111
Q ss_pred EEEccCCCEEEEEeCCCc-----EEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEecc---CCCeEEE
Q psy4876 424 LKWSPDGRYLASGGNDNL-----LNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGT---ADRHIYF 495 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~-----I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs---~Dg~I~i 495 (609)
+. -+++.++.++.++. +..+|..+.... ..............+. . ...+++.||.. ....+..
T Consensus 98 ~~--~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~r~~~~~~~-~--~~~~~~~GG~~~~~~~~~~~~ 168 (288)
T d1zgka1 98 GV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWH----LVAPMLTRRIGVGVAV-L--NRLLYAVGGFDGTNRLNSAEC 168 (288)
T ss_dssp EE--ETTEEEEECCEETTEECCCEEEEETTTTEEE----ECCCCSSCCBSCEEEE-E--TTEEEEECCBCSSCBCCCEEE
T ss_pred cc--cceeeEEecceecccccceeeeeccccCccc----cccccccccccceeee-e--eecceEecCcccccccceEEE
Confidence 12 25666666554433 445666544110 0000000111111222 2 23466655421 1345788
Q ss_pred EECCCCceeEEEcCCC--CeEEEEEcCCCCeEEEEEecC----CCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEE
Q psy4876 496 WNVSSGACLDSIDTKS--QVCALLWNSDYKELVSAHGFA----QNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTV 569 (609)
Q Consensus 496 wd~~t~~~~~~~~~~~--~v~sl~~s~~g~~l~~~sG~~----dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L 569 (609)
||..+++....-.... ...+.... .+..++. .|.. -..+.++|..+.+....-.....+..+.+...+++++
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~-GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~ 246 (288)
T d1zgka1 169 YYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAA-GGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIY 246 (288)
T ss_dssp EETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEE-CCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEE
T ss_pred eeccccccccccccccccccccccce-eeeEEEe-cCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEE
Confidence 8887654332211111 11122222 2333333 2221 2356777776654332211112222222223377888
Q ss_pred EEEECCCC-----EEEEEcCCCc
Q psy4876 570 LSAGADET-----LRLWKIFEKV 587 (609)
Q Consensus 570 ~s~s~Dg~-----I~iWdl~~~~ 587 (609)
+.|+.++. |.+||+....
T Consensus 247 v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 247 VLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp EECCBCSSCBCCEEEEEETTTTE
T ss_pred EEecCCCCeecceEEEEECCCCE
Confidence 88776543 6788887643
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.46 E-value=2.1 Score=40.83 Aligned_cols=182 Identities=9% Similarity=0.058 Sum_probs=104.3
Q ss_pred eEEEEEccCCCEEEEEeC------------CCeEEEEeCCCCee-EEEe--cCCC-----CceEEEEe----cCC-EEEE
Q psy4876 338 VCSVAWIQEGYMLGVGTS------------LGTVQLWDVSAKKK-CRTM--DGHD-----VRVGALAW----NTY-ILSS 392 (609)
Q Consensus 338 V~~v~~spdg~~Lasgs~------------dg~I~iwd~~~~~~-~~~l--~~h~-----~~V~~l~~----~~~-~L~s 392 (609)
.-+|+..|+|..+++++. .|.|.++|+.+.+. ...+ .+.. -....+.. ++. .|++
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v 116 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 116 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence 446788888866655432 48899999876532 2222 1110 12233433 343 3444
Q ss_pred Ee---cCCeEEEEEcCCCCeeEE---EEc-cCCCCeEEEEEccCCCEEEEEeC---------------CCcEEEEeCCCC
Q psy4876 393 GS---RCGNIVHHDVRSRDHKVA---LLQ-NHTQEVCGLKWSPDGRYLASGGN---------------DNLLNIWSGVPG 450 (609)
Q Consensus 393 gs---~dg~I~iwd~~~~~~~~~---~~~-~h~~~V~~l~~spdg~~lasgs~---------------Dg~I~iwd~~~~ 450 (609)
.. ...+|-+|++......+. .+. ......+.|++..+|.+++|-.. -+...+|....+
T Consensus 117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~ 196 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 196 (340)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence 43 345788888765432222 222 12245788999999988877311 012333433332
Q ss_pred CCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc---eeEEEcCCCCeEEEEEcCC-CCeEE
Q psy4876 451 QHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA---CLDSIDTKSQVCALLWNSD-YKELV 526 (609)
Q Consensus 451 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~---~~~~~~~~~~v~sl~~s~~-g~~l~ 526 (609)
........-.....|+++|+++.++++. +..+.|++|++.... ....+......-.+.+.+. |.+.+
T Consensus 197 -------~~~~~~~~l~~pNGI~~s~d~~~lyVa~--t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwv 267 (340)
T d1v04a_ 197 -------DVRVVAEGFDFANGINISPDGKYVYIAE--LLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWV 267 (340)
T ss_dssp -------CEEEEEEEESSEEEEEECTTSSEEEEEE--GGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEE
T ss_pred -------ceEEEcCCCCccceeEECCCCCEEEEEe--CCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEE
Confidence 1222223345678999999998888776 478999999987443 2233445667788888764 55555
Q ss_pred EE
Q psy4876 527 SA 528 (609)
Q Consensus 527 ~~ 528 (609)
.+
T Consensus 268 a~ 269 (340)
T d1v04a_ 268 GC 269 (340)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.22 E-value=0.93 Score=46.96 Aligned_cols=204 Identities=10% Similarity=-0.062 Sum_probs=107.3
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCC--CeeEEEEccC--CCCeEEE
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSR--DHKVALLQNH--TQEVCGL 424 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~--~~~~~~~~~h--~~~V~~l 424 (609)
.++.++.+|.+.++|..+++.+.........+.....+.........++.......... ........+. ...-...
T Consensus 338 ~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~ 417 (582)
T d1flga_ 338 ATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPM 417 (582)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCC
T ss_pred eeEeecccccEEeecccCCcccccccccCccccccccccccccceeccccccccccccccccceEEECCCccCCcccccc
Confidence 56678889999999999999887665444433333332110000011111100000000 0011111111 1123345
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee
Q psy4876 425 KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504 (609)
Q Consensus 425 ~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~ 504 (609)
+++|+..++.....+..-.+|....... . +.......+...+ +.+...|.|.-+|+.+|+.+
T Consensus 418 a~dp~~g~~yvp~~~~~~~~~~~~~~~~-----~-----g~~~~~~~~~~~~--------~~~~~~G~l~AiD~~TG~i~ 479 (582)
T d1flga_ 418 AYSQDTGLFYVPANHWKEDYWTEEVSYT-----K-----GSAYLGMGFRIKR--------MYDDHVGSLRAMDPVSGKVV 479 (582)
T ss_dssp EECTTTCCEEEEEECEEEEEEECCCCCC-----T-----TSCCCCEEEEEEE--------SCSSCSEEEEEECTTTCCEE
T ss_pred eecCCCCceeeecccccccccccccccc-----c-----cccccccCccccc--------cccCCCCeEEEEcCCCCcEE
Confidence 7888776666666665555554332210 0 0000000111101 11124578899999999999
Q ss_pred EEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCC-EEEEEEeCCCC-EEEEE
Q psy4876 505 DSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSAR-VLNLAMSPDET-TVLSA 572 (609)
Q Consensus 505 ~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~-~L~s~ 572 (609)
-......++.+-..+..+..+++ |..||.++-+|..+|+.+.++...... -.-+.|..||+ +|+..
T Consensus 480 W~~~~~~p~~~g~lstagglVF~--Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~ 547 (582)
T d1flga_ 480 WEHKEHLPLWAGVLATAGNLVFT--GTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp EEEEESSCCCSCCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred eecCCCCCCccceeEEcCCeEEE--eCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence 88876655443334556777776 668999999999999999888642211 11256667886 55443
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.12 E-value=1.5 Score=42.54 Aligned_cols=182 Identities=9% Similarity=-0.073 Sum_probs=102.6
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCC-----------CeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEc
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSA-----------KKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDV 404 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~-----------~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~ 404 (609)
....-++++....++++|+.++ +.|..+.. ....... .-..|..++|+++.|+... ++.+..++.
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d~l~v~~-~~~l~~~~~ 112 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGDQVLVST-RNALYSLDL 112 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETTEEEEEE-SSEEEEEES
T ss_pred cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCCEEEEEe-CCCEEEEEe
Confidence 3456788888777888888875 66665321 1111111 1236899999888776654 566888887
Q ss_pred CCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 405 RSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 405 ~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
.... .......-...+..+.++|. .++....+|.+.++++..+.......-+..+. -.+.+.+++|++.|..+++
T Consensus 113 ~~l~-~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~v~ws~kgkq~v~- 187 (381)
T d1xipa_ 113 EELS-EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFD-VTNSQLAVLLKDRSFQSFA- 187 (381)
T ss_dssp SSTT-CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEE-ECSSEEEEEETTSCEEEEE-
T ss_pred eccc-cccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEE-ecCCceEEEEeCCcEEEEE-
Confidence 7643 33333344567888888875 56667778999999998873210000011111 1245677777776644433
Q ss_pred EeccCCCeEEEE-ECCCCceeE-EEcCCCCeEEEEEcCCCCeEEEEE
Q psy4876 485 GGGTADRHIYFW-NVSSGACLD-SIDTKSQVCALLWNSDYKELVSAH 529 (609)
Q Consensus 485 ggGs~Dg~I~iw-d~~t~~~~~-~~~~~~~v~sl~~s~~g~~l~~~s 529 (609)
+. ++...+- ++.....+. ....+..+.+|.|-.+..++++..
T Consensus 188 ~~---g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~ 231 (381)
T d1xipa_ 188 WR---NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 231 (381)
T ss_dssp EE---TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred eC---CCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEEC
Confidence 32 1111111 111110000 001234688999998877777653
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=92.14 E-value=4.1 Score=36.97 Aligned_cols=223 Identities=12% Similarity=0.047 Sum_probs=108.4
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEE
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALL 414 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~ 414 (609)
...|..|+-- ..+.++-. ||.|..|-......+..-......|..++-.....+.- .||.+..|......... ..
T Consensus 25 ~~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~al-~dg~v~~wG~~~~gq~~-~~ 99 (273)
T d1jtdb_ 25 QSGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTT-VP 99 (273)
T ss_dssp SSSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEEE-ETTEEEEEECCTTSTTC-CC
T ss_pred CCCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCCceeee-eeeeeeccCCCcceeec-cc
Confidence 3457777652 23333334 89999997765433332222344566666633333333 48999999765432111 11
Q ss_pred ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEE
Q psy4876 415 QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIY 494 (609)
Q Consensus 415 ~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~ 494 (609)
......+..++... ...+. -.|+.+..|....... ..........|..++-.. ...++. .++.++
T Consensus 100 ~~~~~~~~~i~~~~--~~~~~-~~dg~v~~~g~~~~~~------~~~~~~~~~~v~~~~~~~--~~~~~~----~~g~~~ 164 (273)
T d1jtdb_ 100 AEARSGVDAIAAGA--WASYA-LKDGKVIAWGDDSDGQ------TTVPAEAQSGVTALDGGV--YTALAV----KNGGVI 164 (273)
T ss_dssp GGGGSSCCEEEEET--TEEEE-EETTEEEEEECCTTST------TSCCGGGGSSEEEEEECS--SEEEEE----ETTEEE
T ss_pred cccccceeEEeeec--ccccc-cccccceecccCCCCc------eeeeccCCceEEEEeccc--eeeeee----ccccee
Confidence 11122344444332 22222 2478999997543311 111111223455544322 123332 478888
Q ss_pred EEECCCC-ceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEE
Q psy4876 495 FWNVSSG-ACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAG 573 (609)
Q Consensus 495 iwd~~t~-~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s 573 (609)
.|-.... ...........|..|+.... ..+.. .||.|+-|=....-.+..-......|..|+-.. ...++.
T Consensus 165 ~~G~~~~g~~~~~~~~~~~v~~Is~G~~--h~~~l---~dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~-~~~~~l-- 236 (273)
T d1jtdb_ 165 AWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLAL---KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGE-WYSLAL-- 236 (273)
T ss_dssp EEECCTTSTTSCCGGGSSSEEEEEECSS--EEEEE---ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECS-SCEEEE--
T ss_pred EeecccCCcccccccccCCccceeccce--eeEEE---ecCcEEEcCCCCCCccCCCccCCCCcEEEEeCc-ceEEEE--
Confidence 8876532 22222223446776654332 22222 378899996533211111111224466776543 334443
Q ss_pred CCCCEEEEEcCC
Q psy4876 574 ADETLRLWKIFE 585 (609)
Q Consensus 574 ~Dg~I~iWdl~~ 585 (609)
.||.|..|--..
T Consensus 237 ~~g~v~~WG~~~ 248 (273)
T d1jtdb_ 237 KNGKVIAWGSSR 248 (273)
T ss_dssp ETTEEEEESTTC
T ss_pred ECCEEEEECCCC
Confidence 389999996443
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.83 E-value=2.4 Score=38.39 Aligned_cols=217 Identities=13% Similarity=0.133 Sum_probs=98.4
Q ss_pred CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEEEEEeC---------CCe
Q psy4876 289 GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYMLGVGTS---------LGT 358 (609)
Q Consensus 289 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~---------dg~ 358 (609)
..|.+||.++ .+...+..+. ....-..+.+ ++..++.|+. -..
T Consensus 19 ~~~~~yd~~t-------------------------~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 71 (288)
T d1zgka1 19 SYLEAYNPSN-------------------------GTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSA 71 (288)
T ss_dssp CCEEEEETTT-------------------------TEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCC
T ss_pred ceEEEEECCC-------------------------CeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccch
Confidence 3678999988 6666665554 2222222222 4556565542 135
Q ss_pred EEEEeCCCCeeEEE--ecCCCCceEEEEecCCEEEEEecCCe-----EEEEEcCCCCeeEEEEccCCC--CeEEEEEccC
Q psy4876 359 VQLWDVSAKKKCRT--MDGHDVRVGALAWNTYILSSGSRCGN-----IVHHDVRSRDHKVALLQNHTQ--EVCGLKWSPD 429 (609)
Q Consensus 359 I~iwd~~~~~~~~~--l~~h~~~V~~l~~~~~~L~sgs~dg~-----I~iwd~~~~~~~~~~~~~h~~--~V~~l~~spd 429 (609)
+.+||..+.+.... +........++.+++.+++.++.++. +..+|..+.. ......... .-.++... +
T Consensus 72 ~~~yd~~~~~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~r~~~~~~~~-~ 148 (288)
T d1zgka1 72 LDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDE--WHLVAPMLTRRIGVGVAVL-N 148 (288)
T ss_dssp EEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE-T
T ss_pred hhhcccccccccccccccceecceeccccceeeEEecceecccccceeeeeccccCc--cccccccccccccceeeee-e
Confidence 77888876544322 12112223444557777776665443 3446665542 111111111 11112222 3
Q ss_pred CCEEEEEeCC-----CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCC---CeEEEEECCCC
Q psy4876 430 GRYLASGGND-----NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD---RHIYFWNVSSG 501 (609)
Q Consensus 430 g~~lasgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~D---g~I~iwd~~t~ 501 (609)
+.+++.|+.+ ..+..||....... ...... ......+++.. +..+++.||...+ ..+..+|..+.
T Consensus 149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~----~~~~~~-~~~~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~ 221 (288)
T d1zgka1 149 RLLYAVGGFDGTNRLNSAECYYPERNEWR----MITAMN-TIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE 221 (288)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEE----ECCCCS-SCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred ecceEecCcccccccceEEEeeccccccc----cccccc-cccccccccce--eeeEEEecCccccccccceeeeeecce
Confidence 4455555543 35788887654211 000000 01111122222 2356666642222 35677887765
Q ss_pred ceeEEEcCCC-Ce-EEEEEcCCCCeEEEEEecCC----CeEEEEECCCC
Q psy4876 502 ACLDSIDTKS-QV-CALLWNSDYKELVSAHGFAQ----NQLIIWKYPSL 544 (609)
Q Consensus 502 ~~~~~~~~~~-~v-~sl~~s~~g~~l~~~sG~~d----g~I~Iwd~~~~ 544 (609)
+....-.... .. .+++. -+++.+++ .|... ..|.+||+.+.
T Consensus 222 ~~~~~~~~p~~r~~~~~~~-~~~~l~v~-GG~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 222 TWTFVAPMKHRRSALGITV-HQGRIYVL-GGYDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp EEEECCCCSSCCBSCEEEE-ETTEEEEE-CCBCSSCBCCEEEEEETTTT
T ss_pred eeecccCccCcccceEEEE-ECCEEEEE-ecCCCCeecceEEEEECCCC
Confidence 5433211111 11 12222 24555444 23222 34788888754
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=87.07 E-value=15 Score=35.93 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=41.4
Q ss_pred EEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee------cCCcccEEEEEEcCC
Q psy4876 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL------SRHQAAVKAIAWCPW 477 (609)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~------~~h~~~V~~l~~sp~ 477 (609)
.+...-...++|+|.|||++|++--..|.|++++..++.. ..+..+ ...+.....|+++|+
T Consensus 21 ~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~----~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 21 VILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSV----KTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----EEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred EEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcE----eecccCCccccccCCCCceeeEEeCCC
Confidence 3333345678999999999888764579999998777632 222222 223456789999995
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=83.83 E-value=18 Score=33.90 Aligned_cols=173 Identities=12% Similarity=0.091 Sum_probs=95.1
Q ss_pred CCeEEEEEcCCCCeeEEEEccCC-------CCeEEEEE--ccCCC-EEEEEe---CCCcEEEEeCCCCCCCCCccceEee
Q psy4876 396 CGNIVHHDVRSRDHKVALLQNHT-------QEVCGLKW--SPDGR-YLASGG---NDNLLNIWSGVPGQHTFSTQPIHSL 462 (609)
Q Consensus 396 dg~I~iwd~~~~~~~~~~~~~h~-------~~V~~l~~--spdg~-~lasgs---~Dg~I~iwd~~~~~~~~~~~~~~~~ 462 (609)
.|.|.++|+.........+.... -...++.+ ..+|. +|++.. ...+|.+|++..... ....+..+
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~--~l~~~~~v 144 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK--SLLHLKTI 144 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT--EEEEEEEE
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCC--eEEEEeec
Confidence 58899999876543333322111 12345554 34565 344443 345788888765421 11222333
Q ss_pred cC-CcccEEEEEEcCCCCcEEEEEe-ccC------------CCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEE
Q psy4876 463 SR-HQAAVKAIAWCPWSPNVLASGG-GTA------------DRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSA 528 (609)
Q Consensus 463 ~~-h~~~V~~l~~sp~~~~llasgg-Gs~------------Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~ 528 (609)
.. ......++++..++. ++++-. ... -....+|....++.......-.....|++++++++|+++
T Consensus 145 ~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa 223 (340)
T d1v04a_ 145 RHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIA 223 (340)
T ss_dssp CCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred CCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEE
Confidence 22 123468888888774 666521 000 122334444444444444445678999999999999887
Q ss_pred EecCCCeEEEEECCCCceEEEE--eCCCCCEEEEEEeC-CCCEEEEE
Q psy4876 529 HGFAQNQLIIWKYPSLVKVAEL--HGHSARVLNLAMSP-DETTVLSA 572 (609)
Q Consensus 529 sG~~dg~I~Iwd~~~~~~~~~l--~~h~~~V~~l~~sp-dg~~L~s~ 572 (609)
. ...+.|++|++.....+... ..-....-.+.+.+ +|.+.+.+
T Consensus 224 ~-t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 224 E-LLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp E-GGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred e-CCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 4 46888999988644322211 12234466777776 44444433
|