Psyllid ID: psy4897

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770----
Protein Sequence
FRTQLVLGGPTEAFFFSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDSPPSPSPQSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRGQPSQLIVNYDFGFRLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGSDLSLQDKIRPGRESNPRSSAYKADALQTKLTRVGSGVLSQAAGVHIAQLSLGENSQTRTFHMRCMYRGQPSQLIVNYDFGFRLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGSEEGEMRLRMSSDDGVKLLWLDFGSEEGEMREL
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEEEEcccccccEEEEccccccccEEEEEEccccHHccccccccccEEEEEccEEcccccHHHHHHHHHHcccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccEEEEccccccccEEEEEEccccccccccccccccEEEEEcccccccccHHHHHHHHHHcccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccEEEEccccccccEEEEcccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccEEEEEcHHHHcccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEcEEHEEEccccccccccccccccccccccccccccccccccccEEEEEEEccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccEEEEEEEEcccEEEEEcccccccccccEEEEccccccccccccccEEEEEEEccccccccccccccccccccccccHHHHHHHHEEEcccEEEEccHHHHHHHHHHHHHcccEEEEEEEEcccEEEEEEEEcccEEEEEcccccccccccEEEEccccccccccccccEEEEEEcccccccEEEccccccEEEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEccccccccccEEEEEEEEEEcccccccEEEEEEHHHcEEEEEEEEccccHHHHcccccccEEEEEEccEEcccccHHHHHHHHHccccEEEEEEEccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccEEEEEEHHHcEEEEEEEEccccHHHHcccccccEEEEEEccEEcccccHHHHHHHHHccccEEEEEEEEccHHHHcccccEEEcccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccEEEEcccccccEEEEEcccHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcEcHHccccccccccccccccccccccccccccEEEEEccccEEEEccccccHHcccccEEEccccccccccccccccccccccEEEEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEEcccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccEEEEEEEccccEEEEccccccccccccEEEEEcHHHcccccccccEEEEEEccccccccEEEEHHHccccccEEEEEHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEcccEEEEEEEEcccEEEEccccccccccccEEEEccHHHHccccccccEEEEEEcccccccEEEEcccccccEEEEEEccccccccccc
Coil and Loop (DISEMBL)
frtqlvlggpteafffssrdfysenykytennglgisikggkenkmPILISKIFKgmaadqteqlYVGDAILsvngedlreATHDEAVKALKRAGKVVELEVgvgygrcgtletyvrgQWYKVFVSLEEDYISitldenydnstvlngtlnsntvdsissfmdtvdipdsvenQKRIIRVKKsennglgisikggkenkmPILISKIFKgmaadqteqlYVGDAILsvngedlreATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELqrgflsdsppspspqssqradtrylPLQLCYLVRnykhydsenrtlelhspdgvhscilrasdasEASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKlgqsdclengrassessgddstdRWVSIFGAVTERELRLyesapwspeawstpahngrassessgddstdRWVSIFGAVTERELRLyesapwspeawstpahvfplvstrlvsssrhsdVIVFSVrcgtpqgvatHHLRAETHRDLANWARTLVQATHScvlnqrqvsvrcmyrgqpsqlivNYDFGFRLLEATagsmgrepkilwtypferlrmssddgVKLLWLdfgsdlslqdkirpgresnprssayKADALQTKLTRVGSGVLSQAAGVHIAqlslgensqtrtfhmrcmyrgqpsqlivNYDFGFRLLEATagsmgrepkilwtypferlrmssddGVKLLWLdfgseegeMRLRMSSDDGVKLLWLdfgseegemrel
Flexible Loop (DISEMBL)
frtqlvlggpteafffssrDFYSENYKYTENnglgisikggkenKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALkragkvvelevgvgygrcgtletyvrgQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIirvkksennglgisikggkenkmPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDsppspspqssqradtrYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQSDCLENGrassessgddstdrwVSIFGAVTERELRLYESapwspeawstpahngrassessgddstdrWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRGQPSQLIVNYDFGFRLLEAtagsmgrepkILWTYPFERLRMSSDDGVKLLWLDFGSdlslqdkirpgresnprssayKADALQTKLTRVGSGVLSQAAGVHIAQLSLGENSQTRTFHMRCMYRGQPSQLIVNYDFGFRLLEAtagsmgrepkILWTYPFERLRMSSDDGVKLLWLDFGSEEGEMRlrmssddgvkllwldfgseegemrel
Low Complexity Region (SEG)
FRTQLVLGGPTEAFFFSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDsppspspqssqRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRGQPSQLIVNYDFGFRLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGSDLSLQDKIRPGRESNPRSSAYKADALQTKLTRVGSGVLSQAAGVHIAQLSLGENSQTRTFHMRCMYRGQPSQLIVNYDFGFRLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGSEEGEMRLRMSSDDGVKLLWLDFGSEEGEMREL
Disordered region (IsUnstruct)
*****VLGGPTEAFFFSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDI*********IIRV*******LGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGF******************RYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQS*******************RWVSIFGAVTERELRLYESA***************************RWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRGQPSQLIVNYDFGFRLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGSDL**************************KLTRVGSGVLSQAAGVHIAQLSLGENSQTRTFHMRCMYRGQPSQLIVNYDFGFRLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGS*************GVKLLWLDF**********
Disordered Region (DISOPRED)
***********************ENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGV***********************************************************TVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKY**********************************************************************************************LHSTLHVLTLKSIAEANKILGPALLGDLQLIGWL*******************************FGAVTERELRLYESAPWSPEAWSTPAHN******************IFGAVTERELRLYESAPWSPEAWSTPAHVFPL***************VFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRGQPSQLIVNYDFGFRLLEA*******E**ILWTYPFERLRMSSDDGVKLLWLDFGSDLSLQDKIRPGRESNPRSSAYKADALQTKLTRVGSGVLSQAAGVHIAQLSLGENSQTRTFHMRCMYRGQPSQLIVNYDFGFRLLEA**********ILWTYPFERLRMSSDDGVKLLWLDFGSEEGEMRLRMSSDDGVKLLWLDFGSEE******
Disordered Region (DISEMBL)
FRTQLVLGGPTEAFFFSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFL***************DTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQSD*****************DRWVSIFGAVTERELRLYESAP************************TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRGQPSQLIVNYDFGFRLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGSDLSLQDKIRP***********KADALQTKLTRVGSGVLSQAAGVHIAQLSLGENSQTRTFHMRCMYRGQPSQLIVNYDFGFRLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGSEEGEMRLRMSSDDGVKLLWLDFGS********
Disordered Region (DISPRO)
***QLVLGGPTEAFFFSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVR***************************************SISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEV*************************TRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKL**********************RWVSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRGQPSQLIVNYDFGFRLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGSDLSLQDKIRPGRESNPRSSAYKADALQTKLTRVGSGVLSQAAGVHIAQLSLGENSQTRTFHMRCMYRGQPSQLIVNYDFGFRLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGSEEGEMRLRMSSDDGVKLLWLDFG*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FRTQLVLGGPTEAFFFSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDSPPSPSPQSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRGQPSQLIVNYDFGFRLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGSDLSLQDKIRPGRESNPRSSAYKADALQTKLTRVGSGVLSQAAGVHIAQLSLGENSQTRTFHMRCMYRGQPSQLIVNYDFGFRLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGSEEGEMRLRMSSDDGVKLLWLDFGSEEGEMREL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	774	2.2.26 [Sep-21-2011]
Q99L88	537	Beta-1-syntrophin OS=Mus	yes	N/A	0.607	0.875	0.376	1e-100
Q13884	538	Beta-1-syntrophin OS=Homo	yes	N/A	0.616	0.886	0.387	1e-100
Q61235	520	Beta-2-syntrophin OS=Mus	no	N/A	0.614	0.915	0.360	7e-89
Q13425	540	Beta-2-syntrophin OS=Homo	no	N/A	0.521	0.748	0.395	1e-88
Q28626	505	Alpha-1-syntrophin OS=Ory	no	N/A	0.595	0.912	0.352	6e-78
Q61234	503	Alpha-1-syntrophin OS=Mus	no	N/A	0.625	0.962	0.348	9e-76
Q0P5E6	505	Alpha-1-syntrophin OS=Bos	no	N/A	0.587	0.900	0.341	4e-74
Q13424	505	Alpha-1-syntrophin OS=Hom	no	N/A	0.587	0.900	0.339	6e-74
Q93646	440	Syntrophin-1 OS=Caenorhab	yes	N/A	0.519	0.913	0.332	3e-73
Q925E0	539	Gamma-2-syntrophin OS=Mus	no	N/A	0.487	0.699	0.271	2e-31

>sp|Q99L88|SNTB1_MOUSE Beta-1-syntrophin OS=Mus musculus GN=Sntb1 PE=1 SV=4

 Score =  367 bits (942), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 222/590 (37%), Positives = 319/590 (54%), Gaps = 120/590 (20%)

Query: 108 RCGTLETYVRGQWYKVFVSLEEDYISITLDEN---YD------NSTVLNGTLNSNTVDSI 158
           R G LE  VR +W+KV V+L ED + ++ +E    Y+      N +   G+   + V  +
Sbjct: 21  RSGLLEVLVRDRWHKVLVNLSEDALVLSCEEGAAAYNGIGAATNGSFCRGSGTGHPVPGV 80

Query: 159 -----------SSFMDTVD-IPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISK 206
                      ++F D  + +P+S+ NQKR ++V K E  GLGISIKGGKENKMPILISK
Sbjct: 81  AQAPDSPAGVRTAFTDLPEQVPESISNQKRGVKVLKQELGGLGISIKGGKENKMPILISK 140

Query: 207 IFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYF 266
           IFKG+AADQT+ LYVGDAILSVNG DLR+ATHDEAV+ALKRAGK V LEVKY+RE TPY 
Sbjct: 141 IFKGLAADQTQALYVGDAILSVNGADLRDATHDEAVQALKRAGKEVLLEVKYMREATPYV 200

Query: 267 RKASIISEVGWELQRGFLSDSPPSPSPQ---------SSQ----RADTRYLPLQLCYLVR 313
           +K S +SE+GWE        +PP  SP+         SSQ      D + +PL++CY+ R
Sbjct: 201 KKGSPVSEIGWE--------TPPPESPRLGGGSAEPLSSQSFSFHRDRKSIPLKMCYVTR 252

Query: 314 NYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILG 373
           N    D ENR LE+HSPD  H+ ILR+ D++ A  WF+ +HS    L  + +A+  + LG
Sbjct: 253 NMTLADPENRQLEIHSPDAKHTVILRSKDSATAQAWFSAIHSNAGDLLTRVVADIREQLG 312

Query: 374 PALLG---DLQLIGWLARKLGQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYE 430
              +    +++ +GWLA K+                  +S  +W      +TE++L +Y+
Sbjct: 313 KTGIAGSREIRHLGWLAEKV----------------PGESEKQWKPALVVLTEKDLLIYD 356

Query: 431 SAPWSPEAWSTPAHNGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPA 490
           S P   EAW +P H+                                             
Sbjct: 357 SMPRRKEAWFSPVHS--------------------------------------------- 371

Query: 491 HVFPLVSTRLV------SSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQ 544
             +PL++TRLV       S +    + F+ R GT QG+ TH  RAE  RDL++W R++VQ
Sbjct: 372 --YPLLATRLVHSGPGKGSPQAGMDLSFATRTGTKQGIETHLFRAEISRDLSHWTRSIVQ 429

Query: 545 ATHSCVLNQRQVSVRCMYRGQPSQLIVNYDFGFRLLEATAGSMGREPKILWTYPFERLRM 604
             H+      +++  C YR Q  +L ++YD GF +  +T    G  PK +   P+E+L+M
Sbjct: 430 GCHNSAELTAEITTACTYRNQECRLTIHYDNGFSI--STEPQDGAFPKTIIQSPYEKLKM 487

Query: 605 SSDDGVKLLWLDFGSDLSLQDKIRPGRESNPRSSAYKADA-LQTKLTRVG 653
           SSDDG+++L+LDFG     + +I+    S P+   +   + L  K+TR+G
Sbjct: 488 SSDDGIRMLYLDFGGK---EGEIQLDLHSCPKPIVFIIHSFLSAKITRLG 534

Adapter protein that binds to and probably organizes the subcellular localization of a variety of membrane proteins. May link various receptors to the actin cytoskeleton and the dystrophin glycoprotein complex.
Mus musculus (taxid: 10090)

>sp|Q13884|SNTB1_HUMAN Beta-1-syntrophin OS=Homo sapiens GN=SNTB1 PE=1 SV=3

 Score =  367 bits (942), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 226/583 (38%), Positives = 320/583 (54%), Gaps = 106/583 (18%)

Query: 108 RCGTLETYVRGQWYKVFVSLEEDYISITLDEN---YDN-STVLNGTL------------N 151
           R G LE  VR +W+KV V+L ED + ++ +E    Y+   T  NG+              
Sbjct: 22  RSGLLEVLVRDRWHKVLVNLSEDALVLSSEEGAAAYNGIGTATNGSFCRGAGAGHPGAGG 81

Query: 152 SNTVDSI----SSFMDTVD-IPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISK 206
           +   DS     ++F D  + +P+S+ NQKR ++V K E  GLGISIKGGKENKMPILISK
Sbjct: 82  AQPPDSPAGVRTAFTDLPEQVPESISNQKRGVKVLKQELGGLGISIKGGKENKMPILISK 141

Query: 207 IFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYF 266
           IFKG+AADQT+ LYVGDAILSVNG DLR+ATHDEAV+ALKRAGK V LEVKY+RE TPY 
Sbjct: 142 IFKGLAADQTQALYVGDAILSVNGADLRDATHDEAVQALKRAGKEVLLEVKYMREATPYV 201

Query: 267 RKASIISEVGWEL------QRGFLSDSPPSPSPQSSQRADTRYLPLQLCYLVRNYKHYDS 320
           +K S +SE+GWE       + G  +  PPS    S  R D + +PL++CY+ R+    D 
Sbjct: 202 KKGSPVSEIGWETPPPESPRLGGSTSDPPSSQSFSFHR-DRKSIPLKMCYVTRSMALADP 260

Query: 321 ENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALLG-- 378
           ENR LE+HSPD  H+ ILR+ D++ A  WF+ +HS ++ L  + IAE  + LG   +   
Sbjct: 261 ENRQLEIHSPDAKHTVILRSKDSATAQAWFSAIHSNVNDLLTRVIAEVREQLGKTGIAGS 320

Query: 379 -DLQLIGWLARKLGQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPE 437
            +++ +GWLA K+                  +S  +W      +TE++L +Y+S P   E
Sbjct: 321 REIRHLGWLAEKV----------------PGESKKQWKPALVVLTEKDLLIYDSMPRRKE 364

Query: 438 AWSTPAHNGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVS 497
           AW +P H                                                +PL++
Sbjct: 365 AWFSPVHT-----------------------------------------------YPLLA 377

Query: 498 TRLVSS-----SRHSDV-IVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHSCVL 551
           TRLV S     S  + V + F+ R GT QG+ TH  RAET RDL++W R++VQ  H+   
Sbjct: 378 TRLVHSGPGKGSPQAGVDLSFATRTGTRQGIETHLFRAETSRDLSHWTRSIVQGCHNSAE 437

Query: 552 NQRQVSVRCMYRGQPSQLIVNYDFGFRLLEATAGSMGREPKILWTYPFERLRMSSDDGVK 611
              ++S  C Y+ Q  +L ++Y+ GF +   T    G  PK +   P+E+L+MSSDDG++
Sbjct: 438 LIAEISTACTYKNQECRLTIHYENGFSI--TTEPQEGAFPKTIIQSPYEKLKMSSDDGIR 495

Query: 612 LLWLDFGSDLSLQDKIRPGRESNPRSSAYKADA-LQTKLTRVG 653
           +L+LDFG       +I+    S P+   +   + L  K+TR+G
Sbjct: 496 MLYLDFGGK---DGEIQLDLHSCPKPIVFIIHSFLSAKITRLG 535

Adapter protein that binds to and probably organizes the subcellular localization of a variety of membrane proteins. May link various receptors to the actin cytoskeleton and the dystrophin glycoprotein complex.

Homo sapiens (taxid: 9606)

>sp|Q61235|SNTB2_MOUSE Beta-2-syntrophin OS=Mus musculus GN=Sntb2 PE=1 SV=2

 Score =  329 bits (843), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 209/579 (36%), Positives = 297/579 (51%), Gaps = 103/579 (17%)

Query: 108 RCGTLETYVRGQWYKVFVSLEEDYISITLD----ENYDNSTVLNGTLNSNTVDSISSFMD 163
           + G +E  +R +W +V   L  + +S+T D    E    +   NG  N    +S+    +
Sbjct: 9   KAGLVELLLRERWVRVVAELSGESLSLTGDAAAVEPEPPAAAFNGLPNGGGGESLPGSPN 68

Query: 164 -------------TVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKG 210
                              S     R +RV K E  GLGISIKGG+EN+MPILISKIF G
Sbjct: 69  RGLGPPSPPAPPRGPAGEASASPPVRRVRVVKQEAGGLGISIKGGRENRMPILISKIFPG 128

Query: 211 MAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKAS 270
           +AADQ+  L +GDAILSVNG DLR+ATHD+AV+ALKRAGK V LEVK++REVTPY +K S
Sbjct: 129 LAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKPS 188

Query: 271 IISEVGWE---LQRGFLSDSPPSPSPQSSQRA-DTRYLPLQLCYLVRNYKHYDSENRTLE 326
           ++S++ WE    Q    S S  S SP+      D + +PL++C+  RN    D ENR +E
Sbjct: 189 LVSDLPWEGASPQSPSFSGSEDSGSPKHQNTTKDRKVIPLKMCFAARNLSMPDLENRLIE 248

Query: 327 LHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALLG----DLQL 382
           LHSPD  ++ ILR  D + A  WF  +H+ +  L  + +AE N +LG         +++ 
Sbjct: 249 LHSPDSRNTLILRCKDTATAHSWFVAIHTNIMALLPQVLAELNAMLGATSTAGGSKEVKH 308

Query: 383 IGWLARKLGQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTP 442
           I WLA +      L+ GR            +W  +  AVTE++L LY+  PW+ +AW++P
Sbjct: 309 IAWLAEQAK----LDGGR-----------QQWRPVLMAVTEKDLLLYDCMPWTRDAWASP 353

Query: 443 AHNGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLV- 501
            H+                                               +PLV+TRLV 
Sbjct: 354 CHS-----------------------------------------------YPLVATRLVH 366

Query: 502 ------SSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHSCVLNQRQ 555
                 S S  SD + F+ R G+ QG+  H  R ETHRDL+ W R LVQ  H+     ++
Sbjct: 367 SGSGCRSPSLGSD-LTFATRTGSRQGIEMHLFRVETHRDLSTWTRILVQGCHAAAELIKE 425

Query: 556 VSVRCMYRGQPSQLIVNYDFGFRLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWL 615
           VS+ C   GQ  +  V+Y+ GF +     G+      IL+ YPFERL+MS+DDG++ L+L
Sbjct: 426 VSLGCTLSGQEVRFTVHYEHGFTITRDNGGAS----SILYRYPFERLKMSADDGIRNLYL 481

Query: 616 DFGSDLSLQDKIRPGRESNPRSSAYKADA-LQTKLTRVG 653
           DFG     + ++     S P+   +     L  K+TR+G
Sbjct: 482 DFGGP---EGELTMDLHSCPKPIVFVLHTFLSAKVTRMG 517

Adapter protein that binds to and probably organizes the subcellular localization of a variety of membrane proteins. May link various receptors to the actin cytoskeleton and the dystrophin glycoprotein complex. May play a role in the regulation of secretory granules via its interaction with PTPRN.

Mus musculus (taxid: 10090)

>sp|Q13425|SNTB2_HUMAN Beta-2-syntrophin OS=Homo sapiens GN=SNTB2 PE=1 SV=1

 Score =  328 bits (841), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 197/498 (39%), Positives = 275/498 (55%), Gaps = 94/498 (18%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           R +RV K E  GLGISIKGG+EN+MPILISKIF G+AADQ+  L +GDAILSVNG DLR+
Sbjct: 114 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 173

Query: 236 ATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDSPP------ 289
           ATHD+AV+ALKRAGK V LEVK++REVTPY +K S++S++ WE   G    SP       
Sbjct: 174 ATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDLPWE---GAAPQSPSFSGSED 230

Query: 290 --SPSPQSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEAS 347
             SP  Q+S + D + +PL++C+  RN    D ENR +ELHSPD  ++ ILR  D + A 
Sbjct: 231 SGSPKHQNSTK-DRKIIPLKMCFAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAH 289

Query: 348 LWFNTLHSTLHVLTLKSIAEANKILGPALLG----DLQLIGWLARKLGQSDCLENGRASS 403
            WF  +H+ +  L  + +AE N +LG         +++ I WLA +      L+ GR   
Sbjct: 290 SWFVAIHTNIMALLPQVLAELNAMLGATSTAGGSKEVKHIAWLAEQAK----LDGGR--- 342

Query: 404 ESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRWVS 463
                    +W  +  AVTE++L LY+  PW+ +AW++P H+                  
Sbjct: 343 --------QQWRPVLMAVTEKDLLLYDCMPWTRDAWASPCHS------------------ 376

Query: 464 IFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLV-------SSSRHSDVIVFSVRC 516
                                        +PLV+TRLV       S S  SD + F+ R 
Sbjct: 377 -----------------------------YPLVATRLVHSGSGCRSPSLGSD-LTFATRT 406

Query: 517 GTPQGVATHHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRGQPSQLIVNYDFG 576
           G+ QG+  H  R ETHRDL++W R LVQ  H+     ++VS+ CM  GQ  +L ++Y+ G
Sbjct: 407 GSRQGIEMHLFRVETHRDLSSWTRILVQGCHAAAELIKEVSLGCMLNGQEVRLTIHYENG 466

Query: 577 FRLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGSDLSLQDKIRPGRESNPR 636
           F +     GS      IL+ YPFERL+MS+DDG++ L+LDFG     + ++     S P+
Sbjct: 467 FTISRENGGS----SSILYRYPFERLKMSADDGIRNLYLDFGGP---EGELTMDLHSCPK 519

Query: 637 SSAYKADA-LQTKLTRVG 653
              +     L  K+TR+G
Sbjct: 520 PIVFVLHTFLSAKVTRMG 537

Adapter protein that binds to and probably organizes the subcellular localization of a variety of membrane proteins. May link various receptors to the actin cytoskeleton and the dystrophin glycoprotein complex. May play a role in the regulation of secretory granules via its interaction with PTPRN.

Homo sapiens (taxid: 9606)

>sp|Q28626|SNTA1_RABIT Alpha-1-syntrophin OS=Oryctolagus cuniculus GN=SNTA1 PE=1 SV=1

 Score =  292 bits (748), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 194/550 (35%), Positives = 277/550 (50%), Gaps = 89/550 (16%)

Query: 119 QWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDT----VDIPDSVENQ 174
           +W +V VSL ED ++++  +         G +       I+   +       +P+++  Q
Sbjct: 27  RWQRVLVSLAEDALTVSPADGEPGPE--PGAVREPEPAQINGAAEPGAAPPQLPEALLLQ 84

Query: 175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
           +R + V+K++  GLGISIKGG+ENKMPILISKIFKG+AADQTE L+VGDAILSVNGEDL 
Sbjct: 85  RRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLS 144

Query: 235 EATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGF-LSDSPPSPSP 293
            ATHDEAV+ALK+ GK V LEVKY++EV+PYF+ ++  + VGW+      L   P SP P
Sbjct: 145 SATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPGP 204

Query: 294 QSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTL 353
           Q+   ++ +++PL++ Y+ R     D E+R LE+ S DG  +  LRA D + A  W   +
Sbjct: 205 QTRNLSEAKHVPLKMAYVSRRCTPSDPEHRYLEICSADGQDTIFLRAKDEASARSWAGAI 264

Query: 354 HSTLHVLTLKSIAEANKILG---PALLGDLQLIGWLARKLGQSDCLENGRASSESSGDDS 410
            + ++ L      E   +L    PA   D++ IGWL  +L              S G   
Sbjct: 265 QAQINALLPWVKDELQALLAASSPAGSQDIKQIGWLTEQL-------------PSGGTAP 311

Query: 411 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRWVSIFGAVTE 470
           T         +TE+EL LY   P + EA S PA                           
Sbjct: 312 T------LALLTEKELLLYGGLPQTREALSRPARTA------------------------ 341

Query: 471 RELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIV------FSVRCGTPQGVAT 524
                                  PL++TRLV S      +       F++R GT  GV T
Sbjct: 342 -----------------------PLIATRLVHSGPSKGSVPYDAELSFALRTGTRHGVDT 378

Query: 525 HHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRGQPSQLIVNYDFGFRLLEATA 584
           H    E+ ++LA W R LV   H      ++VS  C + G+P  L V+ D GF L  A  
Sbjct: 379 HLFSVESPQELAAWTRQLVDGCHRAAEGVQEVSTACTWNGRPCNLSVHIDKGFTLWAAEP 438

Query: 585 GSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGSDLSLQDKIRPGRESNPRSSAYKADA 644
           G+      +L   PFE+L+MSSDDG  LL+LDFG     + +I+    S P++  +   +
Sbjct: 439 GAAR---AVLLRQPFEKLQMSSDDGASLLFLDFG---GAEGEIQLDLHSCPKTMVFIIHS 492

Query: 645 -LQTKLTRVG 653
            L  K+TR+G
Sbjct: 493 FLSAKVTRLG 502

Adapter protein that binds to and probably organizes the subcellular localization of a variety of membrane proteins. May link various receptors to the actin cytoskeleton and the extracellular matrix via dystrophin glycoprotein complex. Plays an important role in synapse formation and in the organization of UTRN and acetylcholine receptors at the neuromuscular synapse. Binds to phosphatidylinositol 4,5-bisphosphate.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q61234|SNTA1_MOUSE Alpha-1-syntrophin OS=Mus musculus GN=Snta1 PE=1 SV=1

 Score =  285 bits (729), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 196/562 (34%), Positives = 277/562 (49%), Gaps = 78/562 (13%)

Query: 97  VVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVD 156
           ++EL  G G G  G        +W +V +SL ED ++++  +           LN     
Sbjct: 12  LLELRCGAGSGAGGE-------RWQRVLLSLAEDALTVSPADGEPGPEPEPAQLNGAAEP 64

Query: 157 SISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQT 216
             +       +P+++  Q+R + V+K++  GLGISIKGG+ENKMPILISKIFKG+AADQT
Sbjct: 65  GAAP----PQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQT 120

Query: 217 EQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVG 276
           E L+VGDAILSVNGEDL  ATHDEAV+ALK+ GK V LEVKY++EV+PYF+ ++  + VG
Sbjct: 121 EALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVG 180

Query: 277 WELQRGF-LSDSPPSPSPQSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHS 335
           W+      L   P SP PQ    ++ +++ L++ Y+ R     D E R LE+ + DG  +
Sbjct: 181 WDSPPASPLQRQPSSPGPQPRNLSEAKHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDA 240

Query: 336 CILRASDASEASLWFNTLHSTLHVLTLKSIAEANKIL---GPALLGDLQLIGWLARKLGQ 392
             LRA D + A  W   + + +         E   +L   G A   D++ IGWL  +L  
Sbjct: 241 VFLRAKDEASARSWAGAIQAQIGTFIPWVKDELQALLTATGTAGSQDIKQIGWLTEQL-- 298

Query: 393 SDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSES 452
                       S G   T         +TE+EL  Y S P S EA S P       + S
Sbjct: 299 -----------PSGGTAPT------LALLTEKELLFYCSLPQSREALSRPTRTAPLIATS 341

Query: 453 SGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVF 512
           S                    RL  S P                      S  +   + F
Sbjct: 342 SAH------------------RLVHSGPSK-------------------GSVPYDAELSF 364

Query: 513 SVRCGTPQGVATHHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRGQPSQLIVN 572
           ++R GT  GV TH    E+ ++LA W R LV   H      ++VS  C + G+P  L V+
Sbjct: 365 ALRTGTRHGVDTHLFSVESPQELAAWTRQLVDGCHRAAEGIQEVSTACTWNGRPCSLSVH 424

Query: 573 YDFGFRLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGSDLSLQDKIRPGRE 632
            D GF L  A  G+      +L   PFE+L+MSSDDG  LL+LDFG     + +I+    
Sbjct: 425 IDKGFTLWAAEPGAAR---AMLLRQPFEKLQMSSDDGTSLLFLDFG---GAEGEIQLDLH 478

Query: 633 SNPRSSAYKADA-LQTKLTRVG 653
           S P++  +   + L  K+TR+G
Sbjct: 479 SCPKTMVFIIHSFLSAKVTRLG 500

Adapter protein that binds to and probably organizes the subcellular localization of a variety of membrane proteins. May link various receptors to the actin cytoskeleton and the extracellular matrix via the dystrophin glycoprotein complex. Plays an important role in synapse formation and in the organization of UTRN and acetylcholine receptors at the neuromuscular synapse. Binds to phosphatidylinositol 4,5-bisphosphate.

Mus musculus (taxid: 10090)

>sp|Q0P5E6|SNTA1_BOVIN Alpha-1-syntrophin OS=Bos taurus GN=SNTA1 PE=2 SV=1

 Score =  280 bits (715), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 190/556 (34%), Positives = 268/556 (48%), Gaps = 101/556 (18%)

Query: 119 QWYKVFVSLEEDYISITLD----------ENYDNSTVLNGTLNSNTVDSISSFMDTVDIP 168
           +W +  +SLEED ++++            +       LNG               +  +P
Sbjct: 27  RWQRAVLSLEEDALTVSPADGEPGPEPGAQREPEPAQLNGAAEPGAA--------SPPLP 78

Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
           +++  Q R + V+K++  GLGISIKGG+ENKMPILISKIFKG+AADQTE L+VGDAILSV
Sbjct: 79  EALLLQPRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSV 138

Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGF-LSDS 287
           NGEDL  ATHDEAV+ LK+ GK V LEVKY++EV+PYF+ ++  + VGW+      L   
Sbjct: 139 NGEDLSSATHDEAVQVLKKTGKEVVLEVKYMKEVSPYFKNSASGTSVGWDSPPASPLQRQ 198

Query: 288 PPSPSPQSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEAS 347
           P SP P      D +++ L++ Y+ R     D E R LE+ S DG  +  LRA D + A 
Sbjct: 199 PSSPGPPPRDLRDAKHMSLKMAYVSRRCTPTDPETRYLEICSADGRDTLFLRAKDEASAK 258

Query: 348 LWFNTLHSTLHVLTLKSIAEANKILGPALLG---DLQLIGWLARKLGQSDCLENGRASSE 404
            W   + + ++ LT +   E   +L         D++ IGWL  +L              
Sbjct: 259 SWAAAIQAQVNTLTPRVKDELQALLSATSTAGSQDIKRIGWLTEQL-------------P 305

Query: 405 SSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRWVSI 464
           S G   T         +TE+EL LY   P + EA S PA                     
Sbjct: 306 SGGTAPT------LALLTEKELLLYSCLPQTREALSRPARTA------------------ 341

Query: 465 FGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIV------FSVRCGT 518
                                        PL++TRLV S      +       F++R GT
Sbjct: 342 -----------------------------PLITTRLVHSGPSKGSVPYDAELSFALRTGT 372

Query: 519 PQGVATHHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRGQPSQLIVNYDFGFR 578
             GV TH    E+ ++LA W R LV   H      ++VS  C + G+   L V+ D GF 
Sbjct: 373 RHGVDTHLFSVESPQELAAWTRQLVDGCHRAAEGVQEVSTACTWNGRACSLSVHIDNGFT 432

Query: 579 LLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGSDLSLQDKIRPGRESNPRSS 638
           L  A  G+      +L   PFE+L+MSSDDG  LL+LDFG     + +I+    S P++ 
Sbjct: 433 LWAAEPGAAR---AVLLRQPFEKLQMSSDDGASLLFLDFG---GAEGEIQLDLHSCPKTM 486

Query: 639 AYKADA-LQTKLTRVG 653
            +   + L  K+TR+G
Sbjct: 487 VFIIHSFLSAKVTRLG 502

Adapter protein that binds to and probably organizes the subcellular localization of a variety of membrane proteins. May link various receptors to the actin cytoskeleton and the extracellular matrix via the dystrophin glycoprotein complex. Plays an important role in synapse formation and in the organization of UTRN and acetylcholine receptors at the neuromuscular synapse. Binds to phosphatidylinositol 4,5-bisphosphate.

Bos taurus (taxid: 9913)

>sp|Q13424|SNTA1_HUMAN Alpha-1-syntrophin OS=Homo sapiens GN=SNTA1 PE=1 SV=1

 Score =  279 bits (713), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 189/556 (33%), Positives = 271/556 (48%), Gaps = 101/556 (18%)

Query: 119 QWYKVFVSLEEDYISITLDEN----------YDNSTVLNGTLNSNTVDSISSFMDTVDIP 168
           +W +V +SL ED ++++  +                 LNG                  +P
Sbjct: 27  RWQRVLLSLAEDVLTVSPADGDPGPEPGAPREQEPAQLNGAAEPGA--------GPPQLP 78

Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
           +++  Q+R + V+K++  GLGISIKGG+ENKMPILISKIFKG+AADQTE L+VGDAILSV
Sbjct: 79  EALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSV 138

Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGF-LSDS 287
           NGEDL  ATHDEAV+ LK+ GK V LEVKY+++V+PYF+ ++  + VGW+      L   
Sbjct: 139 NGEDLSSATHDEAVQVLKKTGKEVVLEVKYMKDVSPYFKNSTGGTSVGWDSPPASPLQRQ 198

Query: 288 PPSPSPQSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEAS 347
           P SP P     ++ +++ L++ Y+ +     D E R LE+ S DG  +  LRA D + A 
Sbjct: 199 PSSPGPTPRNFSEAKHMSLKMAYVSKRCTPNDPEPRYLEICSADGQDTLFLRAKDEASAR 258

Query: 348 LWFNTLHSTLHVLTLKSIAEANKILGPALLG---DLQLIGWLARKLGQSDCLENGRASSE 404
            W   + + ++ LT +   E   +L         D++ IGWL  +L              
Sbjct: 259 SWATAIQAQVNTLTPRVKDELQALLAATSTAGSQDIKQIGWLTEQL-------------P 305

Query: 405 SSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRWVSI 464
           S G   T         +TE+EL LY S P + EA S PA                     
Sbjct: 306 SGGTAPT------LALLTEKELLLYLSLPETREALSRPARTA------------------ 341

Query: 465 FGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIV------FSVRCGT 518
                                        PL++TRLV S      +       F++R GT
Sbjct: 342 -----------------------------PLIATRLVHSGPSKGSVPYDAELSFALRTGT 372

Query: 519 PQGVATHHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRGQPSQLIVNYDFGFR 578
             GV TH    E+ ++LA W R LV   H      ++VS  C + G+P  L V+ D GF 
Sbjct: 373 RHGVDTHLFSVESPQELAAWTRQLVDGCHRAAEGVQEVSTACTWNGRPCSLSVHIDKGFT 432

Query: 579 LLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGSDLSLQDKIRPGRESNPRSS 638
           L  A  G+      +L   PFE+L+MSSDDG  LL+LDFG     + +I+    S P++ 
Sbjct: 433 LWAAEPGAAR---AVLLRQPFEKLQMSSDDGASLLFLDFG---GAEGEIQLDLHSCPKTI 486

Query: 639 AYKADA-LQTKLTRVG 653
            +   + L  K+TR+G
Sbjct: 487 VFIIHSFLSAKVTRLG 502

Adapter protein that binds to and probably organizes the subcellular localization of a variety of membrane proteins. May link various receptors to the actin cytoskeleton and the extracellular matrix via the dystrophin glycoprotein complex. Plays an important role in synapse formation and in the organization of UTRN and acetylcholine receptors at the neuromuscular synapse. Binds to phosphatidylinositol 4,5-bisphosphate.

Homo sapiens (taxid: 9606)

>sp|Q93646|SNT1_CAEEL Syntrophin-1 OS=Caenorhabditis elegans GN=stn-1 PE=1 SV=1

 Score =  276 bits (707), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 178/536 (33%), Positives = 264/536 (49%), Gaps = 134/536 (25%)

Query: 108 RCGTLETYVRGQWYKVFVSLEEDYISI-TLDENYDNSTVLNGTLNSNTVDSISSFMDTVD 166
           R G ++ +V+GQW++V  +L+   I++ T+++N                           
Sbjct: 5   RSGLVDIFVQGQWHRVLATLDPTAITLQTMEQN--------------------------- 37

Query: 167 IPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAIL 226
                E +KR +RV K + NGLGISIKGG++N MPI+ISKIFKGMAADQ  +L++ D I+
Sbjct: 38  ---EAEAEKRTVRVVKYDGNGLGISIKGGRDNNMPIVISKIFKGMAADQAGELFLDDVII 94

Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFLSD 286
           SVNGE+L +A+H+EAV+ALKRAG++V+L+V+Y RE      + +I+  V W+        
Sbjct: 95  SVNGENLLDASHEEAVRALKRAGRVVDLQVQYRRE--DMMHRENIVENVEWD-------- 144

Query: 287 SPPSPSPQSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEA 346
                      R   R + L+L Y+ R     D+E R LE+ SP G +S  +R S + EA
Sbjct: 145 --------DDIRERVRTIGLKLAYVARAGIDADAEGRILEMRSPSGRYSLAMRCSSSEEA 196

Query: 347 SLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQSDCLENGRASSESS 406
             WF  LH+    L  +++A+ N +LG      ++ +GW+A ++      ENG       
Sbjct: 197 DGWFEALHACTTCLLTQALAQVNIMLGNN--PQVRHMGWIAEQVS-----ENG------- 242

Query: 407 GDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRWVSIFG 466
                  W   F  +T  E+  YE+ P     W+ P                        
Sbjct: 243 ----ISMWKPKFMTLTNSEILFYEAVPQLKAEWAEP------------------------ 274

Query: 467 AVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRH--------SDVIVFSVRCGT 518
                  RL                V PLV+TR+V +S          +DVI F +R GT
Sbjct: 275 -------RL----------------VRPLVATRVVQTSSRTAPVIKGLTDVISFRMRTGT 311

Query: 519 PQGVATHHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRGQPSQLIVNYDFGFR 578
            QGV TH +R ETH +LA W R +V   +   L+  QVS  C++RG+  +LIVN D G  
Sbjct: 312 QQGVRTHTIRVETHAELARWVRAVVIGGYEACLSTSQVSAPCLWRGESCELIVNLDNGIS 371

Query: 579 LLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFG-----SDLSLQDKIRP 629
           LL +T        ++LW + FE +R + DDG + LW+DFG      +L L +  +P
Sbjct: 372 LLSSTG-------EVLWQHSFETIRATGDDGGRFLWVDFGPPHGEQELDLLNSAKP 420

Adapter protein that binds to and probably organizes the subcellular localization of a variety of membrane proteins. May link various receptors to the actin cytoskeleton and the dystrophin glycoprotein complex (DGC). May also act by slowing calcium channel activity via a direct or indirect mechanism potentially involving other second messengers. Plays an early role in the formation of the neuromuscular junction and is necessary for muscle maintenance.

Caenorhabditis elegans (taxid: 6239)

>sp|Q925E0|SNTG2_MOUSE Gamma-2-syntrophin OS=Mus musculus GN=Sntg2 PE=2 SV=1

 Score =  138 bits (347), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 129/476 (27%), Positives = 205/476 (43%), Gaps = 99/476 (20%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           R + +++    GLG+SIKGG E+ +P++ISKIFK  AADQTE L++GDA+L VNG ++  
Sbjct: 72  RTVTLRRQPVGGLGLSIKGGAEHGVPVVISKIFKDQAADQTEMLFIGDAVLQVNGINVEN 131

Query: 236 ATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASI----------------ISEVGWEL 279
           ATH+E V  L+ AG  V + V+YLRE  P F K  +                + + G  L
Sbjct: 132 ATHEEVVHLLRNAGDDVTITVEYLREA-PSFLKLPLGSPGPSSDHSSRASSPLFDSGLHL 190

Query: 280 QRGFLSDSPPSPS------PQSSQR-ADTRYLPLQLCYLVRNYKHYDSENRT--LELHSP 330
                  +P SPS      P+  +R  DT  +PL +  + R YK    + R+  LE+ + 
Sbjct: 191 NGHCSHTAPSSPSSPIANEPKYEKRWLDTLSVPLSMARISR-YKAGTEKLRSSALEVLAL 249

Query: 331 DGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKL 390
           DG  + +L+ S A + + W  ++ + +  LTL+ +  ANK   P     +  +GW+  +L
Sbjct: 250 DGASTGVLQFSTAQDCADWLRSISTNISDLTLQHMKMANKCCSPC--DQVVHMGWVNERL 307

Query: 391 GQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASS 450
                           G D++  +   F A+      ++ + P S   W      GRA  
Sbjct: 308 ---------------QGADNSQNFRPKFLALRGSSFYIFGAPPVSTLDW------GRA-- 344

Query: 451 ESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVI 510
                              ER   L E             H F L     + ++ +  + 
Sbjct: 345 -------------------ERAYNLCEVL--------FKVHKFWLSDNYWLQANLYLGLQ 377

Query: 511 VFSVRCGTPQGVA---------THHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCM 561
            F   C  P+            +H    E   +LA W +   +AT   V      +  C 
Sbjct: 378 DFD--CEDPRSYCFSVLANHGKSHIFSVELGSELAVWEKAFQRATFMEVQRTGSKTYLCS 435

Query: 562 YRGQPSQLIVNYDFGFRLLEATAGSMGREPKILWTYPFERLRMSSDDG---VKLLW 614
           ++G+     V++  GF   +      G+   +LW + F +L+ SSDDG   VKLL+
Sbjct: 436 WQGETLCFTVDFALGFTCFD------GKTKNVLWRFKFSQLKGSSDDGKTRVKLLF 485

Adapter protein that binds to and probably organizes the subcellular localization of a variety of proteins. May link various receptors to the actin cytoskeleton and the dystrophin glycoprotein complex.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	774
193690550	503	PREDICTED: beta-1-syntrophin-like [Acyrt	0.638	0.982	0.558	1e-173
340719461	573	PREDICTED: beta-1-syntrophin-like [Bombu	0.625	0.844	0.524	1e-145
350410458	573	PREDICTED: beta-1-syntrophin-like [Bombu	0.625	0.844	0.522	1e-144
383847082	573	PREDICTED: beta-1-syntrophin-like [Megac	0.625	0.844	0.526	1e-144
110760138	579	PREDICTED: beta-1-syntrophin [Apis melli	0.647	0.865	0.529	1e-142
345479253	610	PREDICTED: beta-1-syntrophin-like [Nason	0.627	0.796	0.515	1e-142
158300220	478	AGAP012354-PA [Anopheles gambiae str. PE	0.562	0.910	0.549	1e-137
116008173	627	Syntrophin-like 1, isoform B [Drosophila	0.630	0.778	0.468	1e-135
442634062	624	Syntrophin-like 1, isoform E [Drosophila	0.627	0.778	0.466	1e-135
442634058	625	Syntrophin-like 1, isoform C [Drosophila	0.627	0.777	0.465	1e-135

>gi|193690550|ref|XP_001943188.1| PREDICTED: beta-1-syntrophin-like [Acyrthosiphon pisum]

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 309/553 (55%), Positives = 396/553 (71%), Gaps = 59/553 (10%)

Query: 104 VGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMD 163
           +GYGR   LETYVRGQWYKV+V+LE+D+I I+LDE Y++ T +NG+LN+NT+DS  S +D
Sbjct: 4   IGYGRSSALETYVRGQWYKVYVTLEDDFICISLDETYEHCTPVNGSLNNNTLDSSGSHID 63

Query: 164 TVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGD 223
            VD+PDSV NQKR+IRV K+++NGLGISIKGG+ENKMPILISKIFKGMAADQTEQLYVGD
Sbjct: 64  CVDVPDSVANQKRLIRVVKTDSNGLGISIKGGRENKMPILISKIFKGMAADQTEQLYVGD 123

Query: 224 AILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGF 283
           AILSVN +DLREATHDEAVKALK+AGK+VELEVKYLREVTPYFRKA+IISEVGWELQRGF
Sbjct: 124 AILSVNKQDLREATHDEAVKALKQAGKIVELEVKYLREVTPYFRKATIISEVGWELQRGF 183

Query: 284 LSDSPPSPSPQSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDA 343
           LS +  SP  +S Q+ D RYLPLQLC L RNYKH D EN+T+ELHSPDGVH CILR  +A
Sbjct: 184 LSTN--SPIHRSPQKPDARYLPLQLCCLTRNYKHPDPENKTIELHSPDGVHFCILRTQEA 241

Query: 344 SEASLWFNTLHSTLHVLTLKSIAEANKILGPAL--LGDLQLIGWLARKLGQSDCLENGRA 401
           SEA+ WFNTLH  L+VL+LK++ +ANKIL   +  LG L  IGWL R     + +   R+
Sbjct: 242 SEATCWFNTLHGALNVLSLKALHDANKILANIMPVLGQLHHIGWLFRINRNENSM---RS 298

Query: 402 SSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRW 461
            S        D+W S+FG VT +ELRLYE APWSP+AWS P                   
Sbjct: 299 ISSDEEFTVNDKWQSVFGVVTSKELRLYEVAPWSPDAWSAP------------------- 339

Query: 462 VSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQG 521
             +F                          V  L+STRL++SSR+S++I FS+RCGT +G
Sbjct: 340 --LF--------------------------VCSLLSTRLMNSSRNSELITFSLRCGTEEG 371

Query: 522 VATHHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRGQPSQLIVNYDFGFRLLE 581
           + TH  + +T RDLA+WAR ++Q  H+ V  +R+V+ RC++ G+P+QL ++Y+ GF L+E
Sbjct: 372 IVTHRFKVDTQRDLASWARAVIQGCHNSVAIRREVNCRCLWHGKPAQLSIHYENGFTLIE 431

Query: 582 ATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGSDLSLQDKIRPGRESNPRSSAYK 641
           +  GS+GREPK LW+YPF++L+MSSDD  +LLWLDFG  + ++  +    E +P+   + 
Sbjct: 432 SKTGSVGREPKKLWSYPFDKLKMSSDDNNRLLWLDFGDSVEIEIDL----ECSPKPLVFI 487

Query: 642 A-DALQTKLTRVG 653
             + L  K+ R+G
Sbjct: 488 LHNFLSAKIHRLG 500

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719461|ref|XP_003398172.1| PREDICTED: beta-1-syntrophin-like [Bombus terrestris]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 309/589 (52%), Positives = 366/589 (62%), Gaps = 105/589 (17%)

Query: 107 GRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNT--VDSISSFMDT 164
           GR G LET VRGQWY+VFVSLE+DY+SI+LDE+ + S       N N   VDS    ++ 
Sbjct: 45  GRAGVLETQVRGQWYRVFVSLEDDYLSISLDESCETSNNALNNGNINNNNVDS----LND 100

Query: 165 VDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDA 224
            D+PDSV NQKRI+RV KS+NNGLGISIKGGKENKMPILISKIFKGMAAD TEQLYVGDA
Sbjct: 101 PDVPDSVANQKRIVRVVKSDNNGLGISIKGGKENKMPILISKIFKGMAADATEQLYVGDA 160

Query: 225 ILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFL 284
           IL+VNGEDLREATHDEAVKALKRAGK+VELEVKYLREVTPYFRKASII EVGWELQRGFL
Sbjct: 161 ILAVNGEDLREATHDEAVKALKRAGKVVELEVKYLREVTPYFRKASIIQEVGWELQRGFL 220

Query: 285 SDSPPSPSPQSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDAS 344
           S +   P P+S  RADTRYLPLQLC L R +   D E R LELHSPDGVH C LRA+D +
Sbjct: 221 SAT--PPPPKSPPRADTRYLPLQLCRLTRAHPSSDPEGRILELHSPDGVHECWLRAADNA 278

Query: 345 EASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQSDCLENGRASSE 404
           EAS+WFN LHS L  LTLK++  A+ +  P     LQ IGWLAR+     CL+NGRASSE
Sbjct: 279 EASVWFNALHSALAALTLKALRLASALPDPP---QLQHIGWLARR----HCLQNGRASSE 331

Query: 405 SS--------------------GDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAH 444
           SS                    G   T  W S+FGAV+ RELRLYE APWSPEAW++P+ 
Sbjct: 332 SSEDGAGSSASTSRGAGSGFALGGGCTGGWRSVFGAVSGRELRLYECAPWSPEAWASPSI 391

Query: 445 NGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSS 504
                                                            PL++TRLVSS 
Sbjct: 392 T-----------------------------------------------CPLIATRLVSSP 404

Query: 505 RHSD------------VIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHSCVLN 552
              +               F+VR GT  GV THHLRAET RDLA WAR +VQ  H+   +
Sbjct: 405 ARQNEAGSSSSGATQHAATFAVRVGTIDGVVTHHLRAETRRDLAAWARAIVQGCHAAAHS 464

Query: 553 QRQVSVRCMYRGQPSQLIVNYDFGFRLLEATAGSMG-------REPKILWTYPFERLRMS 605
            R+ +VRC ++G+  QL+VN++ GF L  A    +G         P  LW   F++LRMS
Sbjct: 465 LREYTVRCTWQGKACQLVVNHEDGFALFAAGTRGVGGNGVSPSSSPTPLWRRSFDKLRMS 524

Query: 606 SDDGVKLLWLDFGSDLSLQDKIRPGRESNPRSSAYK-ADALQTKLTRVG 653
           +DDG +LLWLDFG +     +I    ES P+   +   + L  K+ R+G
Sbjct: 525 ADDGARLLWLDFGGE---DGEIELDLESCPKPIVFVLHNFLSAKIHRLG 570

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350410458|ref|XP_003489046.1| PREDICTED: beta-1-syntrophin-like [Bombus impatiens]

 Score =  520 bits (1340), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 308/589 (52%), Positives = 366/589 (62%), Gaps = 105/589 (17%)

Query: 107 GRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNT--VDSISSFMDT 164
           GR G LET VRGQWY+VFVSLE+DY+SI+LDE+ + S       N N   VDS    ++ 
Sbjct: 45  GRAGVLETQVRGQWYRVFVSLEDDYLSISLDESCETSNNALNNGNINNNNVDS----LND 100

Query: 165 VDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDA 224
            D+PDSV NQKRI+RV KS+NNGLGISIKGGKENKMPILISKIFKGMAAD TEQLYVGDA
Sbjct: 101 PDVPDSVANQKRIVRVVKSDNNGLGISIKGGKENKMPILISKIFKGMAADATEQLYVGDA 160

Query: 225 ILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFL 284
           IL+VNGEDLREATHDEAVKALKRAGK+VELEVKYLREVTPYFRKASII EVGWELQRGFL
Sbjct: 161 ILAVNGEDLREATHDEAVKALKRAGKVVELEVKYLREVTPYFRKASIIQEVGWELQRGFL 220

Query: 285 SDSPPSPSPQSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDAS 344
           S +   P P+S  RADTRYLPLQLC L R +   D E R LELHSPDGVH C LRA+D +
Sbjct: 221 SAT--PPPPKSPPRADTRYLPLQLCRLTRAHPSSDPEGRILELHSPDGVHECWLRAADNA 278

Query: 345 EASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQSDCLENGRASSE 404
           EAS+WFN LHS L  LTLK++  A+ +  P     LQ IGWLAR+     CL+NGRASSE
Sbjct: 279 EASVWFNALHSALAALTLKALRLASALPDPP---QLQHIGWLARR----HCLQNGRASSE 331

Query: 405 SS--------------------GDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAH 444
           SS                    G   T  W S+FGAV+ RELRLYE APWSPEAW++P+ 
Sbjct: 332 SSEDGAGSSASTSRGAGSGFALGGGCTGGWRSVFGAVSGRELRLYECAPWSPEAWASPSI 391

Query: 445 NGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSS 504
                                                            PL++TRLVSS 
Sbjct: 392 T-----------------------------------------------CPLIATRLVSSP 404

Query: 505 RHSD------------VIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHSCVLN 552
              +               F+VR GT  GV THHLRAET RDLA WAR +VQ  H+   +
Sbjct: 405 ARQNEAGSSSSGATQHAATFAVRVGTIDGVVTHHLRAETRRDLAAWARAIVQGCHAAAHS 464

Query: 553 QRQVSVRCMYRGQPSQLIVNYDFGFRLLEATAGSMG-------REPKILWTYPFERLRMS 605
            R+ +VRC ++G+  QL+VN++ GF L  A    +G         P  LW   F++L+MS
Sbjct: 465 LREYTVRCTWQGKACQLVVNHEDGFALYAAGTRGVGGNGVSPSSSPTPLWRRSFDKLKMS 524

Query: 606 SDDGVKLLWLDFGSDLSLQDKIRPGRESNPRSSAYK-ADALQTKLTRVG 653
           +DDG +LLWLDFG +     +I    ES P+   +   + L  K+ R+G
Sbjct: 525 ADDGARLLWLDFGGE---DGEIELDLESCPKPIVFVLHNFLSAKIHRLG 570

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847082|ref|XP_003699184.1| PREDICTED: beta-1-syntrophin-like [Megachile rotundata]

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 310/589 (52%), Positives = 368/589 (62%), Gaps = 105/589 (17%)

Query: 107 GRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNT--VDSISSFMDT 164
           GR G LET VRGQWY+VFVSLE+DY+SI+LDE+ +         N N   VDS    ++ 
Sbjct: 45  GRAGVLETQVRGQWYRVFVSLEDDYLSISLDESCETGNNALNNGNINNNNVDS----LND 100

Query: 165 VDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDA 224
            D+PDSV NQKRI+RV KS+NNGLGISIKGGKENKMPILISKIFKGMAAD TEQLYVGDA
Sbjct: 101 PDVPDSVANQKRIVRVVKSDNNGLGISIKGGKENKMPILISKIFKGMAADATEQLYVGDA 160

Query: 225 ILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFL 284
           IL+VNGEDLREATHDEAVKALKRAGK+VELEVKYLREVTPYFRKASII EVGWELQRGFL
Sbjct: 161 ILAVNGEDLREATHDEAVKALKRAGKVVELEVKYLREVTPYFRKASIIQEVGWELQRGFL 220

Query: 285 SDSPPSPSPQSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDAS 344
           S +   P P+S  RADTRYLPLQLC L R +   D E R LELHSPDGVH C LRA+D +
Sbjct: 221 SAT--PPPPKSPPRADTRYLPLQLCRLTRAHPSSDPEGRILELHSPDGVHECWLRAADNA 278

Query: 345 EASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQSDCLENGRASSE 404
           EA++WFN LHS L  LTLK++  A+ +  P     LQ IGWLAR+     CL+NGRASSE
Sbjct: 279 EANVWFNALHSALAALTLKALRLASALPDPP---QLQHIGWLARR----HCLQNGRASSE 331

Query: 405 SSGDD-----STDR---------------WVSIFGAVTERELRLYESAPWSPEAWSTPAH 444
           SS D      ST R               W S+FGAV+ RELRLYE APWSPEAW++P+ 
Sbjct: 332 SSEDGAGSSASTSRGAGSGFGLGGGCTGGWRSVFGAVSGRELRLYECAPWSPEAWASPSI 391

Query: 445 NGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSS 504
                                                            PL++TRLVSS 
Sbjct: 392 T-----------------------------------------------CPLIATRLVSSP 404

Query: 505 RHSD------------VIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHSCVLN 552
              +               F+VR GT  GV THHLRAET RDLA WAR +VQ  H+   +
Sbjct: 405 ARQNEAASSSSGTTQHAATFAVRVGTIDGVVTHHLRAETRRDLAAWARAIVQGCHAAAHS 464

Query: 553 QRQVSVRCMYRGQPSQLIVNYDFGFRLLEATAG-------SMGREPKILWTYPFERLRMS 605
            R+ +VRC ++G+  QL+VN++ GF L  A A        S G  P  LW   F++L+MS
Sbjct: 465 LREYTVRCTWQGKACQLVVNHEDGFTLFAAGARGVGGNGVSPGSPPTPLWRKSFDKLKMS 524

Query: 606 SDDGVKLLWLDFGSDLSLQDKIRPGRESNPRSSAYK-ADALQTKLTRVG 653
           +DDG +LLWLDFG +     +I    ES P+   +   + L  K+ R+G
Sbjct: 525 ADDGARLLWLDFGGE---DGEIELDLESCPKPIVFVLHNFLSAKIHRLG 570

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110760138|ref|XP_001120154.1| PREDICTED: beta-1-syntrophin [Apis mellifera]

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 306/578 (52%), Positives = 368/578 (63%), Gaps = 77/578 (13%)

Query: 107 GRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTV- 165
           GR G LET VRGQWY+VFVSLE+DY+SI+LDE+ + +T   G    N  +  ++ +D++ 
Sbjct: 45  GRAGVLETQVRGQWYRVFVSLEDDYLSISLDESCETAT--TGNNALNNGNINNNNVDSLN 102

Query: 166 --DIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGD 223
             D+PDSV NQKRI+RV KS+NNGLGISIKGGKENKMPILISKIFKGMAAD TEQLYVGD
Sbjct: 103 DPDVPDSVANQKRIVRVVKSDNNGLGISIKGGKENKMPILISKIFKGMAADATEQLYVGD 162

Query: 224 AILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGF 283
           AIL+VNGEDLREATHDEAVKALKRAGK+VELEVKYLREVTPYFRKASII EVGWELQRGF
Sbjct: 163 AILAVNGEDLREATHDEAVKALKRAGKVVELEVKYLREVTPYFRKASIIQEVGWELQRGF 222

Query: 284 LSDSPPSPSPQSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDA 343
           LS +   P P+S  RADTRYLPLQLC L R +   D E R LELHSPDGVH C LRA+D 
Sbjct: 223 LSAT--PPPPKSPPRADTRYLPLQLCRLTRAHPSSDPEGRILELHSPDGVHECWLRAADN 280

Query: 344 SEASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQSDCLENGRASS 403
           +EA++WFN LHS L  LTLK++  A+ +  P     LQ IGWLAR+     CL+NGRASS
Sbjct: 281 AEANVWFNALHSALAALTLKALRLASALPDPP---QLQHIGWLARR----HCLQNGRASS 333

Query: 404 ESSGDD-----STDR----------------WVSIFGAVTERELRLYESAPWSPEAWSTP 442
           ESS D      ST R                W S+FGAV+ RELRLYE APWSPEAW++P
Sbjct: 334 ESSEDGAGSSASTSRGAGGSGFGLGGGCTGGWRSVFGAVSSRELRLYECAPWSPEAWASP 393

Query: 443 AHNGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVS 502
                               SI   +    L             S+PA       +    
Sbjct: 394 --------------------SITCQLIATRLV------------SSPARQNEAGGSGGGG 421

Query: 503 SSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMY 562
                    F+VR GT  GV THHLRAET RDLA WAR +VQ  H+   + R+ +VRC +
Sbjct: 422 GGAMQHAATFAVRVGTMDGVVTHHLRAETRRDLAAWARAIVQGCHAAAHSLREYTVRCTW 481

Query: 563 RGQPSQLIVNYDFGFRLLEATAG------SMGREPKILWTYPFERLRMSSDDGVKLLWLD 616
           +G+  QL+VN++ GF L  A A       S    P  LW   F++L+MS+DDG +LLWLD
Sbjct: 482 QGKACQLVVNHEDGFALYAAGARGGGNGMSPSSSPTPLWRRSFDKLKMSADDGARLLWLD 541

Query: 617 FGSDLSLQDKIRPGRESNPRSSAYK-ADALQTKLTRVG 653
           FG +     +I    ES P+   +   + L  K+ R+G
Sbjct: 542 FGGE---DGEIELDLESCPKPIVFVLHNFLSAKIHRLG 576

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479253|ref|XP_001604924.2| PREDICTED: beta-1-syntrophin-like [Nasonia vitripennis]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 309/600 (51%), Positives = 370/600 (61%), Gaps = 114/600 (19%)

Query: 108 RCGTLETYVRGQWYKVFVSLEEDYISITLDEN------------YDNSTVLNGTLNSNTV 155
           R G LET VRGQWY+VFVSLE+DY+SI+LDE+               +       N+   
Sbjct: 68  RAGILETQVRGQWYRVFVSLEDDYLSISLDESCDSSSGSSTASAVTTTGNGLNNGNNLNN 127

Query: 156 DSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQ 215
           ++I S  D  D+PDSV NQKR +RV KS+NNGLGISIKGGKENKMPILISKIFKGMAAD 
Sbjct: 128 NNIDSLGDP-DVPDSVANQKRTVRVVKSDNNGLGISIKGGKENKMPILISKIFKGMAADA 186

Query: 216 TEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEV 275
           TEQLYVGDAIL+VNGEDLREATHDEAVKALKRAGK+VELEVKYLREVTPYFRKASII EV
Sbjct: 187 TEQLYVGDAILAVNGEDLREATHDEAVKALKRAGKIVELEVKYLREVTPYFRKASIIQEV 246

Query: 276 GWELQRGFLSDSPPSPSPQSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHS 335
           GWELQRGFLS +   P P+S  RADTRYLPLQLC L R++   D E R LELHSPDGVH 
Sbjct: 247 GWELQRGFLSAT--PPPPKSPPRADTRYLPLQLCRLTRSHPSADPEGRVLELHSPDGVHE 304

Query: 336 CILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQSDC 395
           C LRA+D++EAS+WFN LHS L  LTLK++  A+ +  P     LQ IGWLAR+     C
Sbjct: 305 CWLRAADSTEASVWFNALHSALAALTLKALRLASALPDPP---QLQHIGWLARR----HC 357

Query: 396 LENGRASSESSGDDSTDR----------------------WVSIFGAVTERELRLYESAP 433
           ++NGRASSESS D +                         W S+FGAV+ RELRLYE AP
Sbjct: 358 IQNGRASSESSEDGAGSSASTSRGGGGGAGSSYGTGCAGGWRSVFGAVSGRELRLYECAP 417

Query: 434 WSPEAWSTPAHNGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVF 493
           WSPEAW++P+                                                  
Sbjct: 418 WSPEAWASPSIT-----------------------------------------------C 430

Query: 494 PLVSTRLV------------SSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLANWART 541
           PL++TRLV            SS+ H     F+VR GT  GV TH+LRAET RDLA WAR 
Sbjct: 431 PLIATRLVSSPAKPNEASCSSSNNHQYGATFAVRVGTIDGVITHNLRAETRRDLAAWARA 490

Query: 542 LVQATHSCVLNQRQVSVRCMYRGQPSQLIVNYDFGFRLLEA-TAG------SMGREPKIL 594
           +VQ  HS   + R+ +VRC+++G+  QL+V+++ GF L  A T G      S G  P  L
Sbjct: 491 IVQGCHSAAHSLREYTVRCVWQGRACQLVVHHEEGFALYAAGTRGVTGNGISPGSPPTPL 550

Query: 595 WTYPFERLRMSSDDGVKLLWLDFGSDLSLQDKIRPGRESNPRSSAYK-ADALQTKLTRVG 653
           W  PFE+LRMS+DDG +LLWLDFG D     +I    ES P+   +   + L  K+ R+G
Sbjct: 551 WRRPFEKLRMSADDGARLLWLDFGGD---DAEIELDLESCPKPIVFVLHNFLSAKIHRLG 607

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158300220|ref|XP_320202.4| AGAP012354-PA [Anopheles gambiae str. PEST] gi|157013053|gb|EAA00191.4| AGAP012354-PA [Anopheles gambiae str. PEST]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 268/488 (54%), Positives = 340/488 (69%), Gaps = 53/488 (10%)

Query: 163 DTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVG 222
           +  D+PDSV NQKR +RV KS+NNGLGISIKGG+EN+MPILISKIF+GMAAD  + LYVG
Sbjct: 4   EICDVPDSVANQKRHVRVIKSDNNGLGISIKGGRENRMPILISKIFRGMAADNAKGLYVG 63

Query: 223 DAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRG 282
           DAILSVNGEDLR+ATH+EAV+ALKRAG++V+LEVK+LREVTPYFRKASIISEVGWELQR 
Sbjct: 64  DAILSVNGEDLRDATHEEAVRALKRAGRVVDLEVKFLREVTPYFRKASIISEVGWELQRA 123

Query: 283 FL------SDSPPSPSPQSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSC 336
           FL      + SPP  +P+S  RADTRY+PLQL +L RN K++D ENR +ELHSPDG+HSC
Sbjct: 124 FLCPLGPNASSPPGVAPRSPPRADTRYIPLQLTHLARNLKYHDPENRCIELHSPDGIHSC 183

Query: 337 ILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQSDCL 396
           ILRA D  EA+ WFN LHS +   T K++ +AN+ L  +++G+L+ IGWL+R+       
Sbjct: 184 ILRAMDPQEATTWFNALHSAIGKSTQKALLDANRAL-VSIIGELKHIGWLSRR------- 235

Query: 397 ENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDD 456
                   S G + T          T       E+ P S    +    NGR+SSESS  D
Sbjct: 236 --------SGGGEYTH---------THTHRSTAETGPNSQALAALVRLNGRSSSESS--D 276

Query: 457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLV----------SSSRH 506
             D+W SIF AVT+RELRLYESAPWS EAWS P    PLV+TRL           +SS H
Sbjct: 277 ELDKWQSIFVAVTDRELRLYESAPWSVEAWSRPFESCPLVATRLAGAGNTSTVGSNSSTH 336

Query: 507 SDVIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRGQP 566
           S V  F +RCGT +GV +H LR+ET+RD+A WAR LVQ  H+ ++ QR+ S RC+++G+P
Sbjct: 337 SSV--FCIRCGTTRGVVSHWLRSETNRDMAAWARVLVQGCHNAIICQREFSFRCLFQGRP 394

Query: 567 SQLIVNYDFGFRLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDF-----GSDL 621
            QLIV+ D GF LL++    +G   K LWT+PF++L+ S+DDG KLL+LDF     G++L
Sbjct: 395 CQLIVHLDRGFTLLDS---GLGPASKALWTFPFDKLKGSADDGNKLLYLDFSGTEDGAEL 451

Query: 622 SLQDKIRP 629
            L  +  P
Sbjct: 452 ELDMECCP 459

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116008173|ref|NP_524205.2| Syntrophin-like 1, isoform B [Drosophila melanogaster] gi|442634060|ref|NP_001262192.1| Syntrophin-like 1, isoform D [Drosophila melanogaster] gi|85861081|gb|ABC86490.1| IP02644p [Drosophila melanogaster] gi|113194919|gb|AAF51781.3| Syntrophin-like 1, isoform B [Drosophila melanogaster] gi|440216167|gb|AGB94885.1| Syntrophin-like 1, isoform D [Drosophila melanogaster]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 278/593 (46%), Positives = 373/593 (62%), Gaps = 105/593 (17%)

Query: 108 RCGTLETYVRGQWYKVFVSLEEDYISITLDE--------NYDNSTVL------------- 146
           RCG +ET VRG WY+V V+LE D+++++LDE        N   ST L             
Sbjct: 30  RCGNMETRVRGAWYRVLVTLETDFLAVSLDESCEAAQPSNDGQSTTLNGTLGSNHSGGGG 89

Query: 147 -------------NGTL-NSNTVDSIS------------------------------SFM 162
                        NGTL NS ++  ++                                M
Sbjct: 90  GGAGGGGTGGGGQNGTLPNSASLQGMNIQDTELDGSASNDNGDRDPCLNNNNNAGDGGGM 149

Query: 163 DTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVG 222
           D  D+PD V NQKR +R+ KS+NNGLGISIKGG+EN+MPILISKIF+GMAADQ + LYVG
Sbjct: 150 DMCDVPDHVANQKRHVRIIKSDNNGLGISIKGGRENRMPILISKIFRGMAADQAKGLYVG 209

Query: 223 DAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRG 282
           DAIL+VNGE+LR+ATHDEAV+ALKR+G++V+LEVK+LREVTPYFRKASIISEVGWELQR 
Sbjct: 210 DAILTVNGEELRDATHDEAVRALKRSGRVVDLEVKFLREVTPYFRKASIISEVGWELQRA 269

Query: 283 FLSDSPPS-----PSPQSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCI 337
           FL    P      P+P+++ RADTRY+PLQL +L RN K+ D ENR  ELHSPDGVHSCI
Sbjct: 270 FLCPLGPGVPTSPPAPKTTPRADTRYIPLQLTHLARNLKYIDPENRCFELHSPDGVHSCI 329

Query: 338 LRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQSDCLE 397
           LRA+D++EA +WFN LHS +   T +++AEAN+ L   L+G+L+ IGWL++++       
Sbjct: 330 LRAADSAEALVWFNALHSAMGTSTQRALAEANRALT-NLIGELKHIGWLSKRMSGGGSSG 388

Query: 398 NGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDS 457
           +    + S G  +++       +V   EL        SP        +GR+SSESS  D 
Sbjct: 389 SAGGGAASGGSGTSN-------SVVAGELV-------SP--------SGRSSSESS--DE 424

Query: 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDV-----IVF 512
           +D+W+ IF AVTERE R+YESAPWS EAWS P  ++ L +TRL  +  +S +      VF
Sbjct: 425 SDKWLPIFVAVTEREFRIYESAPWSVEAWSRPLEIYALATTRLAGAGNNSSLNGQQTTVF 484

Query: 513 SVRCGTPQGVATHHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRGQPSQLIVN 572
            VRCGT +GV  + LR+ETHRD+A WAR+LVQ +H  V  QR+ S RC+++G+  QL+V+
Sbjct: 485 CVRCGTARGVLVYWLRSETHRDMAAWARSLVQGSHQAVNYQREFSFRCLFQGRQCQLVVH 544

Query: 573 YDFGFRLLEA-----TAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGSD 620
            + GF L +      T  ++      LW + F++L+ S+DDG ++L+LDFG D
Sbjct: 545 INRGFFLYDCGGFAPTTPTVATAKTQLWQFAFDKLKGSADDGARMLYLDFGED 597

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442634062|ref|NP_730686.3| Syntrophin-like 1, isoform E [Drosophila melanogaster] gi|440216168|gb|AAF51779.3| Syntrophin-like 1, isoform E [Drosophila melanogaster]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 276/592 (46%), Positives = 371/592 (62%), Gaps = 106/592 (17%)

Query: 108 RCGTLETYVRGQWYKVFVSLEEDYISITLDE--------NYDNSTVLN------------ 147
           RCG +ET VRG WY+V V+LE D+++++LDE        N   ST LN            
Sbjct: 30  RCGNMETRVRGAWYRVLVTLETDFLAVSLDESCEAAQPSNDGQSTTLNGTLGNHSGGGGG 89

Query: 148 -------------GTL-NSNTVDSIS------------------------------SFMD 163
                        GTL NS ++  ++                                MD
Sbjct: 90  GAGGGGTGGGGQNGTLPNSASLQGMNIQDTELDGSASNDNGDRDPCLNNNNNAGDGGGMD 149

Query: 164 TVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGD 223
             D+PD V NQKR +R+ KS+NNGLGISIKGG+EN+MPILISKIF+GMAADQ + LYVGD
Sbjct: 150 MCDVPDHVANQKRHVRIIKSDNNGLGISIKGGRENRMPILISKIFRGMAADQAKGLYVGD 209

Query: 224 AILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGF 283
           AIL+VNGE+LR+ATHDEAV+ALKR+G++V+LEVK+LREVTPYFRKASIISEVGWELQR F
Sbjct: 210 AILTVNGEELRDATHDEAVRALKRSGRVVDLEVKFLREVTPYFRKASIISEVGWELQRAF 269

Query: 284 LSDSPPS-----PSPQSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCIL 338
           L    P      P+P+++ RADTRY+PLQL +L RN K+ D ENR  ELHSPDGVHSCIL
Sbjct: 270 LCPLGPGVPTSPPAPKTTPRADTRYIPLQLTHLARNLKYIDPENRCFELHSPDGVHSCIL 329

Query: 339 RASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQSDCLEN 398
           RA+D++EA +WFN LHS +   T +++AEAN+ L   L+G+L+ IGWL++++       +
Sbjct: 330 RAADSAEALVWFNALHSAMGTSTQRALAEANRALT-NLIGELKHIGWLSKRMSGGGSSGS 388

Query: 399 GRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDST 458
               + S G  +++       +V   EL                  +GR+SSESS  D +
Sbjct: 389 AGGGAASGGSGTSN-------SVVAGEL-----------------PSGRSSSESS--DES 422

Query: 459 DRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDV-----IVFS 513
           D+W+ IF AVTERE R+YESAPWS EAWS P  ++ L +TRL  +  +S +      VF 
Sbjct: 423 DKWLPIFVAVTEREFRIYESAPWSVEAWSRPLEIYALATTRLAGAGNNSSLNGQQTTVFC 482

Query: 514 VRCGTPQGVATHHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRGQPSQLIVNY 573
           VRCGT +GV  + LR+ETHRD+A WAR+LVQ +H  V  QR+ S RC+++G+  QL+V+ 
Sbjct: 483 VRCGTARGVLVYWLRSETHRDMAAWARSLVQGSHQAVNYQREFSFRCLFQGRQCQLVVHI 542

Query: 574 DFGFRLLEA-----TAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGSD 620
           + GF L +      T  ++      LW + F++L+ S+DDG ++L+LDFG D
Sbjct: 543 NRGFFLYDCGGFAPTTPTVATAKTQLWQFAFDKLKGSADDGARMLYLDFGED 594

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442634058|ref|NP_001262191.1| Syntrophin-like 1, isoform C [Drosophila melanogaster] gi|440216166|gb|AGB94884.1| Syntrophin-like 1, isoform C [Drosophila melanogaster]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 276/593 (46%), Positives = 371/593 (62%), Gaps = 107/593 (18%)

Query: 108 RCGTLETYVRGQWYKVFVSLEEDYISITLDE--------NYDNSTVL------------- 146
           RCG +ET VRG WY+V V+LE D+++++LDE        N   ST L             
Sbjct: 30  RCGNMETRVRGAWYRVLVTLETDFLAVSLDESCEAAQPSNDGQSTTLNGTLGSNHSGGGG 89

Query: 147 -------------NGTL-NSNTVDSIS------------------------------SFM 162
                        NGTL NS ++  ++                                M
Sbjct: 90  GGAGGGGTGGGGQNGTLPNSASLQGMNIQDTELDGSASNDNGDRDPCLNNNNNAGDGGGM 149

Query: 163 DTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVG 222
           D  D+PD V NQKR +R+ KS+NNGLGISIKGG+EN+MPILISKIF+GMAADQ + LYVG
Sbjct: 150 DMCDVPDHVANQKRHVRIIKSDNNGLGISIKGGRENRMPILISKIFRGMAADQAKGLYVG 209

Query: 223 DAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRG 282
           DAIL+VNGE+LR+ATHDEAV+ALKR+G++V+LEVK+LREVTPYFRKASIISEVGWELQR 
Sbjct: 210 DAILTVNGEELRDATHDEAVRALKRSGRVVDLEVKFLREVTPYFRKASIISEVGWELQRA 269

Query: 283 FLSDSPPS-----PSPQSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCI 337
           FL    P      P+P+++ RADTRY+PLQL +L RN K+ D ENR  ELHSPDGVHSCI
Sbjct: 270 FLCPLGPGVPTSPPAPKTTPRADTRYIPLQLTHLARNLKYIDPENRCFELHSPDGVHSCI 329

Query: 338 LRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQSDCLE 397
           LRA+D++EA +WFN LHS +   T +++AEAN+ L   L+G+L+ IGWL++++       
Sbjct: 330 LRAADSAEALVWFNALHSAMGTSTQRALAEANRALT-NLIGELKHIGWLSKRMSGGGSSG 388

Query: 398 NGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDS 457
           +    + S G  +++       +V   EL                  +GR+SSESS  D 
Sbjct: 389 SAGGGAASGGSGTSN-------SVVAGEL-----------------PSGRSSSESS--DE 422

Query: 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDV-----IVF 512
           +D+W+ IF AVTERE R+YESAPWS EAWS P  ++ L +TRL  +  +S +      VF
Sbjct: 423 SDKWLPIFVAVTEREFRIYESAPWSVEAWSRPLEIYALATTRLAGAGNNSSLNGQQTTVF 482

Query: 513 SVRCGTPQGVATHHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRGQPSQLIVN 572
            VRCGT +GV  + LR+ETHRD+A WAR+LVQ +H  V  QR+ S RC+++G+  QL+V+
Sbjct: 483 CVRCGTARGVLVYWLRSETHRDMAAWARSLVQGSHQAVNYQREFSFRCLFQGRQCQLVVH 542

Query: 573 YDFGFRLLEA-----TAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGSD 620
            + GF L +      T  ++      LW + F++L+ S+DDG ++L+LDFG D
Sbjct: 543 INRGFFLYDCGGFAPTTPTVATAKTQLWQFAFDKLKGSADDGARMLYLDFGED 595

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	774
FB|FBgn0037130	627	Syn1 "Syntrophin-like 1" [Dros	0.587	0.725	0.474	8.2e-122
UNIPROTKB|Q13884	538	SNTB1 "Beta-1-syntrophin" [Hom	0.346	0.498	0.478	2.7e-105
MGI|MGI:101781	537	Sntb1 "syntrophin, basic 1" [M	0.350	0.504	0.469	3.1e-104
RGD|1307728	539	Sntb1 "syntrophin, beta 1" [Ra	0.350	0.502	0.462	3.9e-104
UNIPROTKB|Q5ZKZ8	523	SNTB1 "Uncharacterized protein	0.413	0.611	0.434	2e-102
UNIPROTKB|F1PS17	530	SNTB1 "Uncharacterized protein	0.414	0.605	0.442	6.6e-102
UNIPROTKB|F1MDV3	519	SNTB1 "Uncharacterized protein	0.413	0.616	0.433	3.7e-99
ZFIN|ZDB-GENE-040704-13	515	sntb1 "syntrophin, basic 1" [D	0.406	0.611	0.422	4.8e-95
UNIPROTKB|F1S4Z9	505	SNTA1 "Uncharacterized protein	0.413	0.633	0.379	1.6e-75
UNIPROTKB|Q13425	540	SNTB2 "Beta-2-syntrophin" [Hom	0.329	0.472	0.449	4.8e-75

FB|FBgn0037130 Syn1 "Syntrophin-like 1" [Drosophila melanogaster (taxid:7227)]

 Score = 1028 (366.9 bits), Expect = 8.2e-122, Sum P(3) = 8.2e-122
 Identities = 237/499 (47%), Positives = 309/499 (61%)

Query:   137 DENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGK 196
             ++N D    LN   N+N  D     MD  D+PD V NQKR +R+ KS+NNGLGISIKGG+
Sbjct:   128 NDNGDRDPCLNN--NNNAGDG--GGMDMCDVPDHVANQKRHVRIIKSDNNGLGISIKGGR 183

Query:   197 ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEV 256
             EN+MPILISKIF+GMAADQ + LYVGDAIL+VNGE+LR+ATHDEAV+ALKR+G++V+LEV
Sbjct:   184 ENRMPILISKIFRGMAADQAKGLYVGDAILTVNGEELRDATHDEAVRALKRSGRVVDLEV 243

Query:   257 KYLREVTPYFRKASIISEVGWELQRGFLSDXXXXXXXX-----XXXRADTRYLPLQLCYL 311
             K+LREVTPYFRKASIISEVGWELQR FL                  RADTRY+PLQL +L
Sbjct:   244 KFLREVTPYFRKASIISEVGWELQRAFLCPLGPGVPTSPPAPKTTPRADTRYIPLQLTHL 303

Query:   312 VRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKI 371
              RN K+ D ENR  ELHSPDGVHSCILRA+D++EA +WFN LHS +   T +++AEAN+ 
Sbjct:   304 ARNLKYIDPENRCFELHSPDGVHSCILRAADSAEALVWFNALHSAMGTSTQRALAEANRA 363

Query:   372 LGPALLGDLQLIGWLARKL--GQSDCLENGRASSESSGDDST---DRWVSIFGAVTEREL 426
             L   L+G+L+ IGWL++++  G S     G A+S  SG  ++      VS  G  +    
Sbjct:   364 L-TNLIGELKHIGWLSKRMSGGGSSGSAGGGAASGGSGTSNSVVAGELVSPSGRSSSESS 422

Query:   427 RLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAW 486
                ES  W P   +      R     S   S + W         R L +Y        A 
Sbjct:   423 D--ESDKWLPIFVAVTEREFRIYE--SAPWSVEAW--------SRPLEIY--------AL 462

Query:   487 STPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQAT 546
             +T      L      SS       VF VRCGT +GV  + LR+ETHRD+A WAR+LVQ +
Sbjct:   463 ATTR----LAGAGNNSSLNGQQTTVFCVRCGTARGVLVYWLRSETHRDMAAWARSLVQGS 518

Query:   547 HSCVLNQRQVSVRCMYRGQPSQLIVNYDFGFRLLEA-----TAGSMGREPKILWTYPFER 601
             H  V  QR+ S RC+++G+  QL+V+ + GF L +      T  ++      LW + F++
Sbjct:   519 HQAVNYQREFSFRCLFQGRQCQLVVHINRGFFLYDCGGFAPTTPTVATAKTQLWQFAFDK 578

Query:   602 LRMSSDDGVKLLWLDFGSD 620
             L+ S+DDG ++L+LDFG D
Sbjct:   579 LKGSADDGARMLYLDFGED 597

GO:0008307 "structural constituent of muscle" evidence=ISS

GO:0016013 "syntrophin complex" evidence=ISS;NAS

GO:0008092 "cytoskeletal protein binding" evidence=ISS

GO:0005543 "phospholipid binding" evidence=IEA

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IGI

UNIPROTKB|Q13884 SNTB1 "Beta-1-syntrophin" [Homo sapiens (taxid:9606)]

 Score = 645 (232.1 bits), Expect = 2.7e-105, Sum P(3) = 2.7e-105
 Identities = 142/297 (47%), Positives = 188/297 (63%)

Query:   159 SSFMDTVD-IPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTE 217
             ++F D  + +P+S+ NQKR ++V K E  GLGISIKGGKENKMPILISKIFKG+AADQT+
Sbjct:    93 TAFTDLPEQVPESISNQKRGVKVLKQELGGLGISIKGGKENKMPILISKIFKGLAADQTQ 152

Query:   218 QLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGW 277
              LYVGDAILSVNG DLR+ATHDEAV+ALKRAGK V LEVKY+RE TPY +K S +SE+GW
Sbjct:   153 ALYVGDAILSVNGADLRDATHDEAVQALKRAGKEVLLEVKYMREATPYVKKGSPVSEIGW 212

Query:   278 ELQR-------GFLSDXXXXXXXXXXXRADTRYLPLQLCYLVRNYKHYDSENRTLELHSP 330
             E          G  SD             D + +PL++CY+ R+    D ENR LE+HSP
Sbjct:   213 ETPPPESPRLGGSTSDPPSSQSFSF--HRDRKSIPLKMCYVTRSMALADPENRQLEIHSP 270

Query:   331 DGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPA-LLGDLQL--IGWLA 387
             D  H+ ILR+ D++ A  WF+ +HS ++ L  + IAE  + LG   + G  ++  +GWLA
Sbjct:   271 DAKHTVILRSKDSATAQAWFSAIHSNVNDLLTRVIAEVREQLGKTGIAGSREIRHLGWLA 330

Query:   388 RKLGQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAH 444
              K+                G+ S  +W      +TE++L +Y+S P   EAW +P H
Sbjct:   331 EKV---------------PGE-SKKQWKPALVVLTEKDLLIYDSMPRRKEAWFSPVH 371

GO:0005543 "phospholipid binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IDA

GO:0006936 "muscle contraction" evidence=TAS

GO:0016010 "dystrophin-associated glycoprotein complex" evidence=TAS

MGI|MGI:101781 Sntb1 "syntrophin, basic 1" [Mus musculus (taxid:10090)]

 Score = 640 (230.4 bits), Expect = 3.1e-104, Sum P(3) = 3.1e-104
 Identities = 139/296 (46%), Positives = 186/296 (62%)

Query:   159 SSFMDTVD-IPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTE 217
             ++F D  + +P+S+ NQKR ++V K E  GLGISIKGGKENKMPILISKIFKG+AADQT+
Sbjct:    92 TAFTDLPEQVPESISNQKRGVKVLKQELGGLGISIKGGKENKMPILISKIFKGLAADQTQ 151

Query:   218 QLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGW 277
              LYVGDAILSVNG DLR+ATHDEAV+ALKRAGK V LEVKY+RE TPY +K S +SE+GW
Sbjct:   152 ALYVGDAILSVNGADLRDATHDEAVQALKRAGKEVLLEVKYMREATPYVKKGSPVSEIGW 211

Query:   278 EL---QRGFLSDXXXX--XXXXXXXRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDG 332
             E    +   L                 D + +PL++CY+ RN    D ENR LE+HSPD 
Sbjct:   212 ETPPPESPRLGGGSAEPLSSQSFSFHRDRKSIPLKMCYVTRNMTLADPENRQLEIHSPDA 271

Query:   333 VHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPA-LLGDLQL--IGWLARK 389
              H+ ILR+ D++ A  WF+ +HS    L  + +A+  + LG   + G  ++  +GWLA K
Sbjct:   272 KHTVILRSKDSATAQAWFSAIHSNAGDLLTRVVADIREQLGKTGIAGSREIRHLGWLAEK 331

Query:   390 LGQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHN 445
             +                G+ S  +W      +TE++L +Y+S P   EAW +P H+
Sbjct:   332 V---------------PGE-SEKQWKPALVVLTEKDLLIYDSMPRRKEAWFSPVHS 371

GO:0003779 "actin binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045202 "synapse" evidence=IDA

RGD|1307728 Sntb1 "syntrophin, beta 1" [Rattus norvegicus (taxid:10116)]

 Score = 637 (229.3 bits), Expect = 3.9e-104, Sum P(3) = 3.9e-104
 Identities = 137/296 (46%), Positives = 187/296 (63%)

Query:   159 SSFMDTVD-IPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTE 217
             ++F D  + +P+S+ NQKR ++V K E  GLGISIKGGKENKMPILISKIFKG+AADQT+
Sbjct:    94 TAFTDLPEQVPESISNQKRGVKVLKQELGGLGISIKGGKENKMPILISKIFKGLAADQTQ 153

Query:   218 QLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGW 277
              LYVGDAILSVNG DLR+ATHDEAV+ALKRAGK V LEVKY+RE TPY +K S +SE+GW
Sbjct:   154 ALYVGDAILSVNGADLRDATHDEAVQALKRAGKEVLLEVKYMREATPYVKKGSPVSEIGW 213

Query:   278 ELQ-----RGFLSDXXXXXXXXXXXRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDG 332
             E       R                  D + +PL++CY+ R+    D ENR LE+HSPD 
Sbjct:   214 ETPPPESPRLGSGSADPLSSQPFSFHRDRKSIPLKMCYVTRSMTLADPENRQLEIHSPDA 273

Query:   333 VHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPA-LLGDLQL--IGWLARK 389
              H+ +LR+ D++ A  WF+ +HS +  L ++ +A+  + LG   + G  ++  +GWLA K
Sbjct:   274 KHTVVLRSKDSATAQAWFSAIHSNVGDLLVRVVADIREQLGKTGIAGSREIRHLGWLAEK 333

Query:   390 LGQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHN 445
             +                G+ S  +W      +TE++L +Y+S P   EAW +P H+
Sbjct:   334 V---------------PGE-SEKQWKPALVVLTEKDLLIYDSMPRRKEAWLSPVHS 373

GO:0005543 "phospholipid binding" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IPI

GO:0043234 "protein complex" evidence=IEA;ISO

GO:0045202 "synapse" evidence=IEA;ISO

UNIPROTKB|Q5ZKZ8 SNTB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 681 (244.8 bits), Expect = 2.0e-102, Sum P(2) = 2.0e-102
 Identities = 155/357 (43%), Positives = 215/357 (60%)

Query:   108 RCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNST---------VLNGTLNSNTVDSI 158
             R G LE  VR +W+KV  +L  + + ++ +E  D +             G        ++
Sbjct:    17 RSGWLEVLVRERWHKVLANLGGEALVLSGEERPDGAAHNGLGGDGAACRGAEGGGGGSAV 76

Query:   159 -SSFMDTVD-IPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQT 216
              ++F D  + +P++V N+KR ++V K E  GLGISIKGGKENKMPILISKIFKG+AADQT
Sbjct:    77 RTAFTDPPEQVPEAVSNKKRCVKVLKQELGGLGISIKGGKENKMPILISKIFKGLAADQT 136

Query:   217 EQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVG 276
             + LYVGDAIL+VNG DLR+ATHDEAV+ALKRAGK V LEVKY+RE TPY +K S +SE+G
Sbjct:   137 QALYVGDAILAVNGTDLRDATHDEAVQALKRAGKEVLLEVKYMREATPYVKKGSPVSEIG 196

Query:   277 WEL------QRGFLSDXXXXXXXXXXXRADTRYLPLQLCYLVRNYKHYDSENRTLELHSP 330
             WE       + G +S            R D + +PL++CY+ RN    D ENR +E+HSP
Sbjct:   197 WETPPPESPRLGCVSADPLSQLSLSIHR-DKKTIPLKMCYVTRNMTVSDPENRLIEVHSP 255

Query:   331 DGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPA-LLGDLQL--IGWLA 387
             D  H+ +LR+ D++ A  WFN +HS+++ L  + IAE    LG A + G  ++  +GWLA
Sbjct:   256 DAKHTVVLRSKDSATAQAWFNAIHSSVNDLIPRVIAEVRDQLGKAGIAGSREIRHLGWLA 315

Query:   388 RKLGQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAH 444
              K+                GD+    W  +   +TE++L +YES P   EAW +P H
Sbjct:   316 EKV---------------PGDNEK-HWKPVLVVLTEKDLLIYESMPRMKEAWFSPLH 356

GO:0005543 "phospholipid binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0045202 "synapse" evidence=IEA

UNIPROTKB|F1PS17 SNTB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 683 (245.5 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
 Identities = 159/359 (44%), Positives = 214/359 (59%)

Query:   108 RCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNS----TVLNGTL-----NSNTVDSI 158
             R G LE  VR +W+KV V+L ED + ++ +E    S    T  NG        +   DS 
Sbjct:    21 RSGPLEVLVRDRWHKVLVNLGEDALVLSCEEGAAASNGLGTATNGAFCRGAGGAQPPDSP 80

Query:   159 S----SFMDTVD-IPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAA 213
             +    +F D  + +P+++ NQKR ++V K E  GLGISIKGGKENKMPILISKIFKG+AA
Sbjct:    81 AGVRTAFTDLPEQVPEAISNQKRGVKVLKQELGGLGISIKGGKENKMPILISKIFKGLAA 140

Query:   214 DQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIIS 273
             DQT+ LYVGDAILSVNG DLR+ATHDEAV+ALKRAG+ V LEVKY+RE TPY +K S +S
Sbjct:   141 DQTQALYVGDAILSVNGADLRDATHDEAVQALKRAGREVLLEVKYMREATPYVKKGSPVS 200

Query:   274 EVGWELQ-----RGFLSDXXXXXXXXXXXRADTRYLPLQLCYLVRNYKHYDSENRTLELH 328
             E+GWE       R   S              D + +PL++CY+ R+    D ENR LE+H
Sbjct:   201 EIGWETPPPESPRLGASSSDPLSSQPCSFHRDRKSIPLKMCYVTRSMASADPENRQLEIH 260

Query:   329 SPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPA-LLGDLQL--IGW 385
             SPD  H+ ILR+ D++ A  WF+ +HS +  L  + IAE  + LG   + G  ++  +GW
Sbjct:   261 SPDAKHTVILRSKDSATAQAWFSAIHSNVSDLLTQVIAEVREQLGKTGIAGSREIRHLGW 320

Query:   386 LARKLGQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAH 444
             LA K+                G+ S  +W      +TE++L +Y+S P   EAW +P H
Sbjct:   321 LADKV---------------PGE-SEKQWKPALVVLTEKDLLIYDSMPRRKEAWFSPVH 363

GO:0045202 "synapse" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F1MDV3 SNTB1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 663 (238.4 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
 Identities = 154/355 (43%), Positives = 214/355 (60%)

Query:   108 RCGTLETYVRGQWYKVFVSLEEDYISITLDENYDN-------STVLNGTLNSNTVDSI-S 159
             R G LE  VR +W+KV V+L ED + ++ ++   N       ++   G   +     + +
Sbjct:    15 RSGLLEVLVRDRWHKVLVNLGEDALLLSCEDGAANGLGAAAGASSRRGAGPAEAAPGVRT 74

Query:   160 SFMDTVD-IPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQ 218
             +F D  + +P++V +QKR ++V K E  GLGISIKGGKENKMPILISKIFKG+AADQT+ 
Sbjct:    75 AFTDPPERVPEAVCSQKRGVKVLKQELGGLGISIKGGKENKMPILISKIFKGLAADQTQA 134

Query:   219 LYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWE 278
             LYVGDAILSVNG DLR+ATHDEAV+ALKRAG+ V LEVKY+RE TPY  K S +SE+GWE
Sbjct:   135 LYVGDAILSVNGADLRDATHDEAVQALKRAGREVLLEVKYMREATPYVTKGSPVSEIGWE 194

Query:   279 L------QRGFLSDXXXXXXXXXXXRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDG 332
                    + G  +            R D R +PL++C++ R+    D E+R LE+HSPD 
Sbjct:   195 TPPPESPRLGAGAPDPLASQPPSFHR-DRRSIPLRMCFVTRSLALADPESRQLEIHSPDA 253

Query:   333 VHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPA-LLG--DLQLIGWLARK 389
              H+ +LR  D++ A  WF+ +H+T+  L  + I E  + LG   L G  +++ +GWLA K
Sbjct:   254 KHTVVLRGKDSATAQAWFSAIHATVSDLLTRVITEVREQLGSTGLAGGREIRHLGWLAEK 313

Query:   390 LGQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAH 444
             +                GD S  RW      +TE++L +Y+S P   EAW +P H
Sbjct:   314 V---------------PGD-SEKRWRPALVVLTEKDLLIYDSMPRRKEAWFSPVH 352

GO:0045202 "synapse" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

ZFIN|ZDB-GENE-040704-13 sntb1 "syntrophin, basic 1" [Danio rerio (taxid:7955)]

 Score = 630 (226.8 bits), Expect = 4.8e-95, Sum P(2) = 4.8e-95
 Identities = 149/353 (42%), Positives = 208/353 (58%)

Query:   112 LETYVRGQWYKVFVSLEEDYISITL-DENYDNSTVLNGTLNSNTVD-----------SIS 159
             LE  VR QW+ V  SL ++ ++++  D   D S  LNG   + + D           + +
Sbjct:    14 LEVLVREQWHAVLASLGDESLTLSCEDPAADTSVSLNGITTNGSYDQPDPTNSPKTGART 73

Query:   160 SFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQL 219
              F D+  +P+++ N+KR ++V K E  GLGISIKGGKENKMPILISKIFKG+AADQT+ L
Sbjct:    74 PFSDS-QVPEAIANRKRCVKVIKQEVGGLGISIKGGKENKMPILISKIFKGLAADQTQAL 132

Query:   220 YVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWEL 279
             YVGDAILSVNG +LR+ATHDEAV+ LK+AGK V LEVKY+RE TPY +K S +SE+GWE 
Sbjct:   133 YVGDAILSVNGINLRDATHDEAVQVLKKAGKEVMLEVKYMREATPYVKKGSPVSEIGWET 192

Query:   280 ---QRGFLSDXXXXXXX--XXXXRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVH 334
                +   L               + D R +PL++CY+ R+    D ENR +ELHS D  +
Sbjct:   193 PPPESPRLGSPHFELPSPPSQCLQGDRRCIPLKMCYITRSMTVPDPENRQVELHSSDAKN 252

Query:   335 SCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGP-ALLGDLQL--IGWLARKLG 391
             + ++R +D+S A  WF  + S +  LT K I+E  +  G   ++G  ++  +GWLA K  
Sbjct:   253 TIVMRHTDSSSAQTWFTLMQSVITNLTNKVISELREHAGRHGIIGSREIRHLGWLAEKT- 311

Query:   392 QSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAH 444
                  E+ R S           W  +   +TE++L L++S P   E W TP H
Sbjct:   312 -----ESERQS-----------WKPVLVMLTEKDLLLFDSMPRMREHWLTPTH 348

GO:0005543 "phospholipid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1S4Z9 SNTA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 496 (179.7 bits), Expect = 1.6e-75, Sum P(2) = 1.6e-75
 Identities = 137/361 (37%), Positives = 190/361 (52%)

Query:    93 RAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISIT-LD-----ENYDNSTVL 146
             R G ++EL  G G G  G        +W +V +SL ED ++++  D     E       +
Sbjct:     9 RTG-LLELRAGAGSGAGGE-------RWQRVLLSLAEDTLTVSPADGEPGPEPVAQREPV 60

Query:   147 NGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISK 206
                LN  T    +S      +P++   Q R + V K++  GLGISIKGG+ENKMPILISK
Sbjct:    61 PAQLNGATEPGAAS----PQLPEAQLPQTRFVTVHKADAGGLGISIKGGRENKMPILISK 116

Query:   207 IFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYF 266
             IFKG+AADQTE L+VGDAILSVNGEDL  ATHDEAV+ LK+ GK V LEVKY++EV+PYF
Sbjct:   117 IFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQVLKKTGKEVVLEVKYMKEVSPYF 176

Query:   267 RKASIISEVGWELQRGF-LSDXXXXXXXXXXXRADTRYLPLQLCYLVRNYKHYDSENRTL 325
             + ++  + VGW+      L              +D +++ L++ Y+ R     D E R L
Sbjct:   177 KNSASGTSVGWDSPPASPLQRQPSSPGPLPRDLSDAKHVSLKMAYVSRRCTPTDLETRYL 236

Query:   326 ELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKIL---GPALLGDLQL 382
             E+ S DG  +  LRA D + A  W   + + ++ L  +   E   ++   G A   D++ 
Sbjct:   237 EICSADGQDTLFLRAKDEASAKSWAAAIQAQVNALVPRVKDELQALMSATGTAGSQDIKQ 296

Query:   383 IGWLARKLGQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTP 442
             IGWL  +L              S G   T         +TE+EL LY   P + EA S P
Sbjct:   297 IGWLTEQL-------------PSGGTAPT------LALLTEKELLLYNCLPQTREALSRP 337

Query:   443 A 443
             A
Sbjct:   338 A 338

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0007528 "neuromuscular junction development" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003117 "regulation of vasoconstriction by circulating norepinephrine" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|Q13425 SNTB2 "Beta-2-syntrophin" [Homo sapiens (taxid:9606)]

 Score = 576 (207.8 bits), Expect = 4.8e-75, Sum P(3) = 4.8e-75
 Identities = 125/278 (44%), Positives = 172/278 (61%)

Query:   176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
             R +RV K E  GLGISIKGG+EN+MPILISKIF G+AADQ+  L +GDAILSVNG DLR+
Sbjct:   114 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 173

Query:   236 ATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWE----LQRGFLSDXXXXX 291
             ATHD+AV+ALKRAGK V LEVK++REVTPY +K S++S++ WE        F        
Sbjct:   174 ATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDLPWEGAAPQSPSFSGSEDSGS 233

Query:   292 XXXXXXRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFN 351
                     D + +PL++C+  RN    D ENR +ELHSPD  ++ ILR  D + A  WF 
Sbjct:   234 PKHQNSTKDRKIIPLKMCFAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWFV 293

Query:   352 TLHSTLHVLTLKSIAEANKILGP-ALLG---DLQLIGWLARKLGQSDCLENGRASSESSG 407
              +H+ +  L  + +AE N +LG  +  G   +++ I WLA +      L+ GR       
Sbjct:   294 AIHTNIMALLPQVLAELNAMLGATSTAGGSKEVKHIAWLAEQAK----LDGGR------- 342

Query:   408 DDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHN 445
                  +W  +  AVTE++L LY+  PW+ +AW++P H+
Sbjct:   343 ----QQWRPVLMAVTEKDLLLYDCMPWTRDAWASPCHS 376

GO:0005543 "phospholipid binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030658 "transport vesicle membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0016020 "membrane" evidence=TAS

GO:0016010 "dystrophin-associated glycoprotein complex" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q13884	SNTB1_HUMAN	No assigned EC number	0.3876	0.6162	0.8866	yes	N/A
Q99L88	SNTB1_MOUSE	No assigned EC number	0.3762	0.6072	0.8752	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	774
cd01258	89	cd01258, PHsplit_syntrophin, Syntrophin Split Plec	5e-24
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	2e-23
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	1e-20
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	3e-18
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	1e-17
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	1e-17
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	2e-16
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	6e-10
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	4e-09
cd00988	85	cd00988, PDZ_CTP_protease, PDZ domain of C-termina	3e-07
cd00988	85	cd00988, PDZ_CTP_protease, PDZ domain of C-termina	9e-07
cd01258	89	cd01258, PHsplit_syntrophin, Syntrophin Split Plec	2e-05
COG0793	406	COG0793, Prc, Periplasmic protease [Cell envelope	2e-04
COG0793	406	COG0793, Prc, Periplasmic protease [Cell envelope	0.001

>gnl|CDD|241289 cd01258, PHsplit_syntrophin, Syntrophin Split Pleckstrin homology (PH) domain

 Score = 96.2 bits (240), Expect = 5e-24
 Identities = 31/54 (57%), Positives = 39/54 (72%)

Query: 302 RYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHS 355
           + +PL++CY+ RN    D ENR LELHSPDG HSCILR  D++ A  WFN +HS
Sbjct: 32  KSIPLKMCYVTRNLTPPDPENRLLELHSPDGRHSCILRCKDSATAQSWFNAIHS 85

Syntrophins are scaffold proteins that associate with associate with the Duchenne muscular dystrophy protein dystrophin and the dystrophin-related proteins, utrophin and dystrobrevin to form the dystrophin glycoprotein complex (DGC). There are 5 members: alpha, beta1, beta2, gamma1, and gamma2) all of which contains a split (also called joined) PH domain and a PDZ domain (PHN-PDZ-PHC). The split PH domain of alpha-syntrophin adopts a canonical PH domain fold and together with PDZ forms a supramodule functioning synergistically in binding to inositol phospholipids. The alpha-syntrophin PH-PDZ supramodule showed strong binding to phosphoinositides PI(3,5)P2 and PI(5)P, modest binding to PI(3,4)P2 and PI(4,5)P2, and weak binding to PI(3)P, PI(4)P, and PI(3,4,5)P. There are a large number of signaling proteins that bind to the PDZ domain of syntrophins: nitric oxide synthase (nNOS), aquaporin-4, voltage-gated sodium channels, potassium channels, serine/threonine protein kinases, and the ATP-binding cassette transporter A1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 89

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 94.6 bits (236), Expect = 2e-23
 Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           R + ++K    GLG S++GGK++   I +S++  G  A++   L VGD IL VNG  +  
Sbjct: 2   RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAER-GGLRVGDRILEVNGVSVEG 60

Query: 236 ATHDEAVKALKRAGKLVELEVK 257
            TH+EAV+ LK +G  V L V+
Sbjct: 61  LTHEEAVELLKNSGDEVTLTVR 82

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 86.5 bits (215), Expect = 1e-20
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 29  TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
               GLG S++GGK++   I +S++  G  A++   L VGD IL VNG  +   TH+EAV
Sbjct: 9   DPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAER-GGLRVGDRILEVNGVSVEGLTHEEAV 67

Query: 89  KALKRAGKVVELEV 102
           + LK +G  V L V
Sbjct: 68  ELLKNSGDEVTLTV 81

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 79.7 bits (197), Expect = 3e-18
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
           + R++ ++K    GLG S+ GGK+    +++S +  G  A +   L VGD IL VNG  +
Sbjct: 1   EPRLVELEKGGG-GLGFSLVGGKDEGGGVVVSSVVPGSPAAKA-GLRVGDVILEVNGTSV 58

Query: 234 REATHDEAVKALKRAGKLVELEVKY 258
              TH EAV  LK+AG  V L V  
Sbjct: 59  EGLTHLEAVDLLKKAGGKVTLTVLR 83

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 78.2 bits (193), Expect = 1e-17
 Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
              GLG S+ GGK+    +++S +  G  A +   L VGD IL VNG  +   TH EAV 
Sbjct: 10  GGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKA-GLRVGDVILEVNGTSVEGLTHLEAVD 68

Query: 90  ALKRAGKVVELEV 102
            LK+AG  V L V
Sbjct: 69  LLKKAGGKVTLTV 81

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 77.7 bits (192), Expect = 1e-17
 Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
           + ++KS   GLG S+ GG +    I +S++  G AA+    L  GD ILS+NG+DL   +
Sbjct: 2   VTLEKSGRGGLGFSLVGGSDGDPGIFVSEVLPGGAAEAG-GLQEGDRILSINGQDLENLS 60

Query: 238 HDEAVKALKRAGKLVELEVK 257
           HDEAV ALK +G  V L + 
Sbjct: 61  HDEAVLALKGSGGEVTLTIL 80

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 74.6 bits (184), Expect = 2e-16
 Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
              GLG S+ GG +    I +S++  G AA+    L  GD ILS+NG+DL   +HDEAV 
Sbjct: 8   GRGGLGFSLVGGSDGDPGIFVSEVLPGGAAEAG-GLQEGDRILSINGQDLENLSHDEAVL 66

Query: 90  ALKRAGKVVELEV 102
           ALK +G  V L +
Sbjct: 67  ALKGSGGEVTLTI 79

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 32  NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 91
            GLG SI+GG E    +++  +  G  A++   L  GD IL+VNG D++  T ++  + L
Sbjct: 1   GGLGFSIRGGTEG--GVVVLSVEPGSPAER-AGLQAGDVILAVNGTDVKNLTLEDVAELL 57

Query: 92  KRA-GKVVELEV 102
           K+  G+ V L V
Sbjct: 58  KKEVGEKVTLTV 69

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 4/73 (5%)

Query: 186 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 245
            GLG SI+GG E    +++  +  G  A++   L  GD IL+VNG D++  T ++  + L
Sbjct: 1   GGLGFSIRGGTEG--GVVVLSVEPGSPAER-AGLQAGDVILAVNGTDVKNLTLEDVAELL 57

Query: 246 KRA-GKLVELEVK 257
           K+  G+ V L V+
Sbjct: 58  KKEVGEKVTLTVR 70

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 9/74 (12%)

Query: 187 GLGISIK--GGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 244
           G+G+ +K   G      ++I+ +  G  A +   +  GD I++++GE +   + ++ VK 
Sbjct: 3   GIGLELKYDDGG-----LVITSVLPGSPAAKA-GIKAGDIIVAIDGEPVDGLSLEDVVKL 56

Query: 245 LK-RAGKLVELEVK 257
           L+ +AG  V L +K
Sbjct: 57  LRGKAGTKVRLTLK 70

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 85

>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

 Score = 46.8 bits (112), Expect = 9e-07
 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 33  GLGISIK--GGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
           G+G+ +K   G      ++I+ +  G  A +   +  GD I++++GE +   + ++ VK 
Sbjct: 3   GIGLELKYDDGG-----LVITSVLPGSPAAKA-GIKAGDIIVAIDGEPVDGLSLEDVVKL 56

Query: 91  LK-RAGKVVELEVGVGYGRCGTLETYVR 117
           L+ +AG  V L +  G G     E  + 
Sbjct: 57  LRGKAGTKVRLTLKRGDG--EPREVTLT 82

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 85

>gnl|CDD|241289 cd01258, PHsplit_syntrophin, Syntrophin Split Pleckstrin homology (PH) domain

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 13/31 (41%), Positives = 24/31 (77%)

Query: 108 RCGTLETYVRGQWYKVFVSLEEDYISITLDE 138
           R G LE  VRG+W++V  +LEED +++++++
Sbjct: 2   RSGLLEVLVRGRWHRVLATLEEDALTLSIEK 32

Syntrophins are scaffold proteins that associate with associate with the Duchenne muscular dystrophy protein dystrophin and the dystrophin-related proteins, utrophin and dystrobrevin to form the dystrophin glycoprotein complex (DGC). There are 5 members: alpha, beta1, beta2, gamma1, and gamma2) all of which contains a split (also called joined) PH domain and a PDZ domain (PHN-PDZ-PHC). The split PH domain of alpha-syntrophin adopts a canonical PH domain fold and together with PDZ forms a supramodule functioning synergistically in binding to inositol phospholipids. The alpha-syntrophin PH-PDZ supramodule showed strong binding to phosphoinositides PI(3,5)P2 and PI(5)P, modest binding to PI(3,4)P2 and PI(4,5)P2, and weak binding to PI(3)P, PI(4)P, and PI(3,4,5)P. There are a large number of signaling proteins that bind to the PDZ domain of syntrophins: nitric oxide synthase (nNOS), aquaporin-4, voltage-gated sodium channels, potassium channels, serine/threonine protein kinases, and the ATP-binding cassette transporter A1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 89

>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 11/106 (10%)

Query: 152 SNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGM 211
           S+  D  S+++D  D  +   +          E  G+GI ++   E+   + +     G 
Sbjct: 73  SSLGDPHSTYLDPEDAAEFRTDTS-------GEFGGIGIELQ--MEDIGGVKVVSPIDGS 123

Query: 212 AADQTEQLYVGDAILSVNGEDLREATHDEAVKALK-RAGKLVELEV 256
            A +   +  GD I+ ++G+ +   + DEAVK ++ + G  V L +
Sbjct: 124 PAAKA-GIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTI 168

Length = 406

>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 10/93 (10%)

Query: 18  SRDFYSENYKYTENN------GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAI 71
           S     E+      +      G+GI ++   E+   + +     G  A +   +  GD I
Sbjct: 80  STYLDPEDAAEFRTDTSGEFGGIGIELQ--MEDIGGVKVVSPIDGSPAAKA-GIKPGDVI 136

Query: 72  LSVNGEDLREATHDEAVKALK-RAGKVVELEVG 103
           + ++G+ +   + DEAVK ++ + G  V L + 
Sbjct: 137 IKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTIL 169

Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	774
KOG3551|consensus	506		100.0
KOG3549|consensus	505		100.0
KOG3551|consensus	506		99.97
cd01258	108	PH_syntrophin Syntrophin pleckstrin homology (PH)	99.96
KOG3209|consensus	984		99.93
KOG3209|consensus	984		99.88
KOG3549|consensus	505		99.85
KOG3580|consensus	1027		99.81
KOG3580|consensus	1027		99.63
KOG3605|consensus	829		99.62
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	99.53
PRK10139	455	serine endoprotease; Provisional	99.52
PRK10942	473	serine endoprotease; Provisional	99.52
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.51
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.5
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.35
KOG3550|consensus	207		99.28
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.25
KOG3550|consensus	207		99.23
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	99.14
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	99.08
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.98
KOG3553|consensus	124		98.88
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	98.86
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	98.86
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.83
KOG1892|consensus	1629		98.8
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.74
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	98.72
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.68
KOG0792|consensus	1144		98.66
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	98.66
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	98.59
KOG3651|consensus	429		98.57
KOG3571|consensus	626		98.56
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	98.5
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	98.46
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	98.46
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	98.43
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.42
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	98.39
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	98.39
KOG3553|consensus	124		98.35
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	98.35
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.35
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	98.27
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	98.26
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	98.26
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	98.25
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	98.24
KOG3552|consensus	1298		98.23
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.19
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	98.18
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	98.17
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	98.14
PLN00049	389	carboxyl-terminal processing protease; Provisional	98.13
KOG3651|consensus	429		98.13
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	98.11
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	98.1
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	98.1
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	98.1
KOG3552|consensus	1298		98.08
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	98.06
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	98.06
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.06
KOG1892|consensus	1629		98.06
cd01258	108	PH_syntrophin Syntrophin pleckstrin homology (PH)	98.03
KOG3542|consensus	1283		98.03
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	98.01
KOG3938|consensus	334		97.97
KOG3571|consensus	626		97.97
KOG3606|consensus	358		97.97
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	97.96
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	97.94
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	97.93
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	97.93
KOG4371|consensus	1332		97.93
KOG3606|consensus	358		97.93
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	97.91
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	97.87
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	97.86
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	97.85
PRK11186	667	carboxy-terminal protease; Provisional	97.85
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	97.82
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	97.8
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	97.79
PRK10898	353	serine endoprotease; Provisional	97.79
PLN00049	389	carboxyl-terminal processing protease; Provisional	97.78
KOG0609|consensus	542		97.76
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	97.7
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	97.68
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	97.65
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	97.65
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	97.65
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	97.63
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	97.62
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	97.6
KOG3542|consensus	1283		97.58
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	97.58
PRK10779	449	zinc metallopeptidase RseP; Provisional	97.56
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	97.55
PRK10139	455	serine endoprotease; Provisional	97.52
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	97.52
PRK10942	473	serine endoprotease; Provisional	97.47
KOG0609|consensus	542		97.45
PRK11186	667	carboxy-terminal protease; Provisional	97.36
KOG3605|consensus	829		97.27
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	97.27
PRK10898	353	serine endoprotease; Provisional	97.21
KOG4407|consensus	1973		97.17
KOG3834|consensus	462		96.92
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	96.9
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	96.9
KOG1421|consensus	955		96.88
COG3975	558	Predicted protease with the C-terminal PDZ domain	96.81
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	96.78
KOG0606|consensus	1205		96.77
KOG1320|consensus	473		96.72
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	96.69
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	96.66
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	96.56
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	96.52
KOG3129|consensus	231		96.46
KOG0930|consensus	395		96.41
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	96.33
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	96.32
PF15409	89	PH_8: Pleckstrin homology domain	96.21
KOG1738|consensus	638		96.15
KOG0690|consensus	516		96.12
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	96.04
cd01242	112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	96.04
KOG3938|consensus	334		95.92
KOG1738|consensus	638		95.91
cd01256	110	PH_dynamin Dynamin pleckstrin homology (PH) domain	95.89
PRK09681	276	putative type II secretion protein GspC; Provision	95.64
KOG3129|consensus	231		95.04
PRK09681	276	putative type II secretion protein GspC; Provision	95.01
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	94.88
KOG0606|consensus	1205		94.73
KOG3532|consensus	1051		94.73
KOG1421|consensus	955		94.72
cd01243	122	PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin	94.7
KOG3532|consensus	1051		94.69
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	94.69
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	94.37
cd01259	114	PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor pr	94.2
COG3975	558	Predicted protease with the C-terminal PDZ domain	94.07
KOG1320|consensus	473		93.82
COG3031	275	PulC Type II secretory pathway, component PulC [In	92.56
cd01249	104	PH_oligophrenin Oligophrenin Pleckstrin homology (	91.82
COG3031	275	PulC Type II secretory pathway, component PulC [In	91.5
cd01239	117	PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin hom	91.13
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	90.97
cd01249	104	PH_oligophrenin Oligophrenin Pleckstrin homology (	88.7
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	88.64
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	88.35
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	87.97
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	87.85
PF12812	78	PDZ_1: PDZ-like domain	87.68
KOG0790|consensus	600		87.47
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	87.27
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	86.78
KOG4371|consensus	1332		86.52
KOG3834|consensus	462		86.47
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	85.87
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	85.77
COG5599	302	PTP2 Protein tyrosine phosphatase [Signal transduc	85.66
PTZ00267	478	NIMA-related protein kinase; Provisional	85.57
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	85.32
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	84.2
PF12812	78	PDZ_1: PDZ-like domain	84.19
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	83.96
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	82.86
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	82.6
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	82.15
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	81.38
KOG0792|consensus	1144		80.6
KOG4407|consensus	1973		80.39
COG0750	375	Predicted membrane-associated Zn-dependent proteas	80.23

>KOG3551|consensus

Probab=100.00  E-value=1.6e-118  Score=938.79  Aligned_cols=478  Identities=46%  Similarity=0.765  Sum_probs=427.3

Q ss_pred             ccccceeeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCC--CCCCCcCCCCCCCCCccccceEEEEEecc
Q psy4897         106 YGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNT--VDSISSFMDTVDIPDSVENQKRIIRVKKS  183 (774)
Q Consensus       106 ~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~--~~s~s~~~~s~~~pe~~~~~~r~V~L~k~  183 (774)
                      ..+++.++..++++|+++..+|.++.++++.-+....++...|..++|.  ..-..+.....++|+......|.|++.|+
T Consensus        14 a~raGl~~~~~~~rW~rVl~~L~~~altls~~~~~~~~~~ga~~~~~~~~~~g~~~~~~~p~~~p~~~~~~~R~V~V~K~   93 (506)
T KOG3551|consen   14 AVRAGLVEILVRERWHRVLATLSEDALTLSELEGALGPAAGAGDSQPPSPSRGLGPPSPAPPQMPENEAEAERRVRVVKQ   93 (506)
T ss_pred             HHhhhHHHHHhhhhHHHHHhhcCcceeEeeeccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCchhhhcccceeEEEEe
Confidence            3456677788899999999999999998886554333333222222221  11122233445667777778899999999


Q ss_pred             CCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecccc
Q psy4897         184 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT  263 (774)
Q Consensus       184 ~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~~~  263 (774)
                      +.++|||+|+||+++++||+|++|++|.+|++++.|+.||.|++|||.++.+++|+|+|+.||.+|++|.|.|+++++++
T Consensus        94 d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~levKy~REvt  173 (506)
T KOG3551|consen   94 DAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLEVKYMREVT  173 (506)
T ss_pred             cCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeeeeeeehhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCcccccccccccCCCCC-CCCCCCCCCC---CCCCCcCcccceeeEeeecccccCCCCceEEEecCCCceeEEEe
Q psy4897         264 PYFRKASIISEVGWELQRGFLS-DSPPSPSPQS---SQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILR  339 (774)
Q Consensus       264 ~~~~~~~~~~~l~w~~~~~~~~-~~~~~~~~~~---~~~~~~~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr  339 (774)
                      ||+++.+++++++|+.+.++++ ..++..+|++   +...|.+.+|++|||++|++..+|++||+||||++|+++++|||
T Consensus       174 Py~kk~sivs~vgWe~~~p~sp~~~~~~dsp~~~~~~~~~d~k~IpLKm~yvaR~~~~~DpEnR~lEihSpdg~~tliLR  253 (506)
T KOG3551|consen  174 PYFKKESIVSEVGWEDPAPQSPSLGGSEDSPSPKHINFRKDRKTIPLKMAYVARNLIDADPENRQLEIHSPDGRHTLILR  253 (506)
T ss_pred             hhhccCccccccCcCCCCccCcccCCCCCCCCCCcccccccccccchhhHHHHhhCCCCCcccceeeeeCCCCcceEEEE
Confidence            9999999999999999877765 2233322222   34678999999999999999999999999999999999999999


Q ss_pred             eCChHhHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCCCCCceEEEEcceeccCCCccccCCCCCCCCCCCCCCcceeeec
Q psy4897         340 ASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQSDCLENGRASSESSGDDSTDRWVSIFG  419 (774)
Q Consensus       340 ~~d~~~~~~W~~Ai~~ni~~l~~~~~~~~n~~l~~~~~~~~~~mGWl~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  419 (774)
                      |+|.+++..||+|||+||..|+++++++.|++|+.  ..+++|||||+||++++                          
T Consensus       254 ~kdsa~A~~Wf~AiHa~v~~ll~rvlaE~n~~Lg~--t~evkHiGWLaeq~~~~--------------------------  305 (506)
T KOG3551|consen  254 AKDSAEADSWFEAIHANVNTLLTRVLAEVNAMLGN--TSEVKHIGWLAEQVSGG--------------------------  305 (506)
T ss_pred             ccCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc--ccchhhhhhHHhhccCC--------------------------
Confidence            99999999999999999999999999999999996  34999999999999875                          


Q ss_pred             chhhhhhhhccCCCCCCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEe
Q psy4897         420 AVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTR  499 (774)
Q Consensus       420 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r  499 (774)
                                                           +.++|+|+|++||++||+||+++||++|+|++|.++|||++||
T Consensus       306 -------------------------------------G~~~w~P~l~~lTekelliYes~P~~keaws~P~~~ypLvaTR  348 (506)
T KOG3551|consen  306 -------------------------------------GISQWKPKLMALTEKELLIYESMPWTKEAWSRPRHTYPLVATR  348 (506)
T ss_pred             -------------------------------------ChhhhhhheeeechhhhhhhhcChhhHHHhcChhhhhhhhhhh
Confidence                                                 4678999999999999999999999999999999999999999


Q ss_pred             eeccC-----CCCCc-EEEEEEeCCCCceeeEEEEecChhHHHHHHHHHHHHHHHHHHhccceEEEEEecCeeeEEEEEe
Q psy4897         500 LVSSS-----RHSDV-IVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRGQPSQLIVNY  573 (774)
Q Consensus       500 ~~~~s-----~~~~~-~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~l~~~~  573 (774)
                      |||+.     +..+. ++|++||||+|||++|+||||||+||++|+|+||||||.|++.++|+|++|+||||+|+|+|||
T Consensus       349 Lvhsg~~~~s~~~g~~lsFa~RtGTrqGV~thlfrvEThrdLa~WtRslVqGch~Aae~~~EvS~~Cl~~G~~C~L~Vhi  428 (506)
T KOG3551|consen  349 LVHSGSGKGSVIKGLTLSFATRTGTRQGVETHLFRVETHRELAAWTRSLVQGCHEAAELISEVSTACLWNGRECRLTVHI  428 (506)
T ss_pred             heecCCCCCCCcCCceEEEEEecccccceEEEEEEeccHHHHHHHHHHHHHHHHHHHHHHHhhhhhheecCceEEEEEEe
Confidence            99973     33333 7999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCceEEeecccCCCCCCCceeecccccccccccccCceeEEEeeCC-CceeEeccCCCCCCCCCceeehh-hhHhhhhhc
Q psy4897         574 DFGFRLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGS-DLSLQDKIRPGRESNPRSSAYKA-DALQTKLTR  651 (774)
Q Consensus       574 ~~gf~l~~~~~~~~~~~~~~l~~~~f~~l~~ssddg~~~l~l~f~~-~~~~~~~~~~~~~~~~~~~~f~~-~fl~akv~~  651 (774)
                      |+||+|+++.   .|..+++|||||||+||||||||.+|||||||+ ||||||    ||||||||||||| |||||||+|
T Consensus       429 dnGfsl~~~~---~g~a~~vL~q~pFEkLkmSsDDG~r~LyLDFGg~dGEiqL----DLhscpKpiVFIlHsfLSAKVtr  501 (506)
T KOG3551|consen  429 DNGFSLLSEE---TGAAREVLWQHPFEKLKMSSDDGARMLYLDFGGPDGEIQL----DLHSCPKPIVFILHSFLSAKVTR  501 (506)
T ss_pred             cCCeEEEecC---CCcchhhhhhChHHHhccccCCCceEEEEecCCCCccEEe----eeccCCCcEEEEehhhhhhhhhh
Confidence            9999999984   688999999999999999999999999999998 999999    9999999999999 999999999


Q ss_pred             cCcc
Q psy4897         652 VGSG  655 (774)
Q Consensus       652 ~~~~  655 (774)
                      +|+.
T Consensus       502 lgL~  505 (506)
T KOG3551|consen  502 LGLL  505 (506)
T ss_pred             heec
Confidence            9984

>KOG3549|consensus

Probab=100.00  E-value=7.2e-88  Score=699.02  Aligned_cols=420  Identities=27%  Similarity=0.418  Sum_probs=382.1

Q ss_pred             cccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897         171 VENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK  250 (774)
Q Consensus       171 ~~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~  250 (774)
                      .....|+|+++++..++||++|+||.+++.|++|++|.++.+|+..|.|.+||.|++|||+.|..++|+|+|++|+++|+
T Consensus        51 ~~s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGd  130 (505)
T KOG3549|consen   51 MESKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGD  130 (505)
T ss_pred             ccCCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCC
Confidence            34468999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEecccccccccCc----ccccccccccC-CCCC-----------------CCCCCCCCCCCCCCCcCccccee
Q psy4897         251 LVELEVKYLREVTPYFRKAS----IISEVGWELQR-GFLS-----------------DSPPSPSPQSSQRADTRYLPLQL  308 (774)
Q Consensus       251 ~V~L~V~R~~~~~~~~~~~~----~~~~l~w~~~~-~~~~-----------------~~~~~~~~~~~~~~~~~~ipl~~  308 (774)
                      +|+|+|+..+.+.+|++.+-    +.++.....++ .+++                 .|.+..+.+.++|+|...+|++|
T Consensus       131 eVtlTV~~lr~ApaFLklpL~~~~p~SD~ssg~sspl~DsGlhln~ns~T~s~Scss~P~s~~~r~EKRW~D~~~vPL~m  210 (505)
T KOG3549|consen  131 EVTLTVKHLRAAPAFLKLPLTKDTPDSDNSSGCSSPLADSGLHLNVNSGTISRSCSSSPMSICSRPEKRWTDVVAVPLMM  210 (505)
T ss_pred             EEEEEeHhhhcCcHHhcCccCCCCCCccccccccccccccceeecccCCCccCCCCCCCCCCCCchhhhhhhhhhhHHHH
Confidence            99999999999999998652    11221111111 1111                 11122334557899999999999


Q ss_pred             eEeeecccccCC-CCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCCCCCceEEEEcc
Q psy4897         309 CYLVRNYKHYDS-ENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLA  387 (774)
Q Consensus       309 ~~l~R~~~~~d~-r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~~~~~~~n~~l~~~~~~~~~~mGWl~  387 (774)
                      ++++||.+++|. |.+.||+...||..+.||||...+...+|++||..||..|+.+.|+++|+++++  .++|.||||++
T Consensus       211 ar~srY~~GTdklRqNAFeV~aldGvstGii~c~~a~d~~dWL~ait~Ni~~LT~~nmK~~Nrnf~v--~~qivyMGWvn  288 (505)
T KOG3549|consen  211 ARVSRYIYGTDKLRQNAFEVRALDGVSTGIIHCDEAADLSDWLKAITDNIVGLTHLNMKLYNRNFAV--GEQIVYMGWVN  288 (505)
T ss_pred             HHHHhhccCchhhhhccceEEeecccccceeEEhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--cceEEEeeecc
Confidence            999999999999 999999999999999999999999999999999999999999999999999998  58999999999


Q ss_pred             eeccCCCccccCCCCCCCCCCCCCCcceeeecchhhhhhhhccCCCCCCCCCCCCCCCCCCccCCCCCCCCCceEEEEEE
Q psy4897         388 RKLGQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRWVSIFGA  467 (774)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  467 (774)
                      |+..+.                                                              ++++.++|+|++
T Consensus       289 e~~q~~--------------------------------------------------------------~s~q~y~P~FLa  306 (505)
T KOG3549|consen  289 EGVQNN--------------------------------------------------------------ISWQSYKPRFLA  306 (505)
T ss_pred             ccccCc--------------------------------------------------------------ccccccCceeEE
Confidence            999875                                                              267999999999


Q ss_pred             eccceeEEecCCCCChhcccCcccccceeeE--eeeccCCCCCc--EEEEEEeCCCCceeeEEEEecChhHHHHHHHHHH
Q psy4897         468 VTERELRLYESAPWSPEAWSTPAHVFPLVST--RLVSSSRHSDV--IVFSVRCGTPQGVATHHLRAETHRDLANWARTLV  543 (774)
Q Consensus       468 l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~--r~~~~s~~~~~--~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l~  543 (774)
                      |||.++|+|++||.+.++|++++.+|.+|+|  |+++.|+..|.  |||.++.+.   .++|||+||+..||++|+++++
T Consensus       307 LkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~Kdsd~~D~R~~CF~~qs~~---ge~~yfsVEl~seLa~wE~sfq  383 (505)
T KOG3549|consen  307 LKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIVKDSDTVDSRQHCFLLQSSG---GEPRYFSVELRSELARWENSFQ  383 (505)
T ss_pred             ecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHhccccccccccceEEEEcCC---CCceEEEEehhhHHHHHHHHHh
Confidence            9999999999999999999999999999998  79999888886  999999994   4999999999999999999999


Q ss_pred             HHHHHHHHhccceEEEEEecCeeeEEEEEecCceEEeecccCCCCCCCceeecccccccccccccCceeEEEeeCC-C-c
Q psy4897         544 QATHSCVLNQRQVSVRCMYRGQPSQLIVNYDFGFRLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGS-D-L  621 (774)
Q Consensus       544 ~~~~~~~~~~~~~~~~c~~~~~~~~l~~~~~~gf~l~~~~~~~~~~~~~~l~~~~f~~l~~ssddg~~~l~l~f~~-~-~  621 (774)
                      .|++++|++++.+||+|+|+|+..+|||||..||+|+++      +++++||||||+|||+|||||+++|+|.|++ | .
T Consensus       384 ~Atf~eV~r~g~kTyacs~~g~~~glT~Df~~GF~cfe~------atkavlWryKFSQLkGSSDDGKsk~KllFQn~Dtk  457 (505)
T KOG3549|consen  384 AATFTEVIRLGRKTYACSHHGKSGGLTLDFQAGFSCFEG------ATKAVLWRYKFSQLKGSSDDGKSKLKLLFQNHDTK  457 (505)
T ss_pred             hHHhHHHhhhcCceEEEEeccccccEEEEeccCceeecc------cchhhheeeeHhhccCCCCCcchheeEeeeCCchh
Confidence            999999999999999999999999999999999999965      6899999999999999999999999999999 6 8


Q ss_pred             eeEeccCCCCCCCCC-ceeehh-hhHhhhhhccCcchhhhhHHHHHH
Q psy4897         622 SLQDKIRPGRESNPR-SSAYKA-DALQTKLTRVGSGVLSQAAGVHIA  666 (774)
Q Consensus       622 ~~~~~~~~~~~~~~~-~~~f~~-~fl~akv~~~~~~~~~~~~~~~~a  666 (774)
                      +||+|   +||+... .|+||| +||+|||+++||+||++++-+.-|
T Consensus       458 qIE~K---ELEfq~L~avLhCiHsF~aAKVAsvDP~Fl~sq~~a~k~  501 (505)
T KOG3549|consen  458 QIETK---ELEFQVLQAVLHCIHSFLAAKVASVDPAFLSSQQQARKA  501 (505)
T ss_pred             hhhhh---hhhHHHHHHHHHHHHHHHHHHHhccChhhhccHHHHhhh
Confidence            99997   9999998 699999 999999999999999999877654

>KOG3551|consensus

Probab=99.97  E-value=7.9e-33  Score=292.32  Aligned_cols=219  Identities=27%  Similarity=0.408  Sum_probs=139.6

Q ss_pred             EEEEEEeCCCCceeeEEEEecChhHHHHHHHHHHHHHHH-------HHHhccceEEE----------EEecCe---eeEE
Q psy4897         510 IVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHS-------CVLNQRQVSVR----------CMYRGQ---PSQL  569 (774)
Q Consensus       510 ~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l~~~~~~-------~~~~~~~~~~~----------c~~~~~---~~~l  569 (774)
                      -+|.+++++  |.-+.++|+.+..+--.|-.+|+.++..       .|+.+=-.+-.          ..-.|.   .=.|
T Consensus       237 R~lEihSpd--g~~tliLR~kdsa~A~~Wf~AiHa~v~~ll~rvlaE~n~~Lg~t~evkHiGWLaeq~~~~G~~~w~P~l  314 (506)
T KOG3551|consen  237 RQLEIHSPD--GRHTLILRAKDSAEADSWFEAIHANVNTLLTRVLAEVNAMLGNTSEVKHIGWLAEQVSGGGISQWKPKL  314 (506)
T ss_pred             ceeeeeCCC--CcceEEEEccCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccchhhhhhHHhhccCCChhhhhhhe
Confidence            688998775  7789999999988888998888766421       22221111111          111120   1123


Q ss_pred             EEEecCceEEeecccCCCCCCCceeeccccc--ccccccccCc---eeEEEeeCC-Cc---eeEeccCCCCCCCCCceee
Q psy4897         570 IVNYDFGFRLLEATAGSMGREPKILWTYPFE--RLRMSSDDGV---KLLWLDFGS-DL---SLQDKIRPGRESNPRSSAY  640 (774)
Q Consensus       570 ~~~~~~gf~l~~~~~~~~~~~~~~l~~~~f~--~l~~ssddg~---~~l~l~f~~-~~---~~~~~~~~~~~~~~~~~~f  640 (774)
                      ..--++-|-+|++-+-....-..++-.||.-  +|..|+-.-.   .-+-|.|-- .|   -+++            -+|
T Consensus       315 ~~lTekelliYes~P~~keaws~P~~~ypLvaTRLvhsg~~~~s~~~g~~lsFa~RtGTrqGV~t------------hlf  382 (506)
T KOG3551|consen  315 MALTEKELLIYESMPWTKEAWSRPRHTYPLVATRLVHSGSGKGSVIKGLTLSFATRTGTRQGVET------------HLF  382 (506)
T ss_pred             eeechhhhhhhhcChhhHHHhcChhhhhhhhhhhheecCCCCCCCcCCceEEEEEecccccceEE------------EEE
Confidence            3334555666665210001112344556642  3333332111   111133321 11   1111            111


Q ss_pred             hh---hhHhhhhhccCcchhhhhHHHHHHHHhcccCcceeeeeeeeeecCceeEEEEEecCCeEEEeccCCCCCCCCeee
Q psy4897         641 KA---DALQTKLTRVGSGVLSQAAGVHIAQLSLGENSQTRTFHMRCMYRGQPSQLIVNYDFGFRLLEATAGSMGREPKIL  717 (774)
Q Consensus       641 ~~---~fl~akv~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~  717 (774)
                      -.   .=|+|=+ |      +..+|||+||.++.|+|      ++|+||||+|+|+|||||||+|++++.|.   .+++|
T Consensus       383 rvEThrdLa~Wt-R------slVqGch~Aae~~~EvS------~~Cl~~G~~C~L~VhidnGfsl~~~~~g~---a~~vL  446 (506)
T KOG3551|consen  383 RVETHRELAAWT-R------SLVQGCHEAAELISEVS------TACLWNGRECRLTVHIDNGFSLLSEETGA---AREVL  446 (506)
T ss_pred             EeccHHHHHHHH-H------HHHHHHHHHHHHHHhhh------hhheecCceEEEEEEecCCeEEEecCCCc---chhhh
Confidence            11   1222222 1      45789999999999999      99999999999999999999999987544   47899


Q ss_pred             eeccccccccccccCceEEEEecCCCcceeEEeecCCCcce
Q psy4897         718 WTYPFERLRMSSDDGVKLLWLDFGSEEGEMRLRMSSDDGVK  758 (774)
Q Consensus       718 ~~~~~~~~~~~~dd~~~~~~~~f~~~~~~~~~~~~~~~~~~  758 (774)
                      |||||||||||+|||.|||||||||++||||||||||..--
T Consensus       447 ~q~pFEkLkmSsDDG~r~LyLDFGg~dGEiqLDLhscpKpi  487 (506)
T KOG3551|consen  447 WQHPFEKLKMSSDDGARMLYLDFGGPDGEIQLDLHSCPKPI  487 (506)
T ss_pred             hhChHHHhccccCCCceEEEEecCCCCccEEeeeccCCCcE
Confidence            99999999999999999999999999999999999998643

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain

Probab=99.96  E-value=1.2e-29  Score=231.39  Aligned_cols=87  Identities=45%  Similarity=0.736  Sum_probs=81.1

Q ss_pred             CCCceEEEEEEeccceeEEecCCCCChhcccCccccccee--eEeeeccCCCCC---c--EEEEEEeCCCCceeeEEEEe
Q psy4897         457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLV--STRLVSSSRHSD---V--IVFSVRCGTPQGVATHHLRA  529 (774)
Q Consensus       457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~--~~r~~~~s~~~~---~--~~f~~~~~t~~g~~~~~~~~  529 (774)
                      ..++|+|+|+||||+|||+|++||+++++|++|+++|||+  +|||+++++..|   .  +||+||+|++  |++|+|||
T Consensus        15 ~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irtg~~--vesh~fsV   92 (108)
T cd01258          15 SSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRTGTQ--VENHYLRV   92 (108)
T ss_pred             cccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEcCCc--eeeEEEEe
Confidence            4689999999999999999999999999999999999999  899999755555   3  9999999986  99999999


Q ss_pred             cChhHHHHHHHHHHHH
Q psy4897         530 ETHRDLANWARTLVQA  545 (774)
Q Consensus       530 et~~dl~~w~~~l~~~  545 (774)
                      ||++||+.|+|+||+|
T Consensus        93 Et~~dL~~W~raiv~g  108 (108)
T cd01258          93 ETHRDLASWERALVRG  108 (108)
T ss_pred             cCHHHHHHHHHHHhcC
Confidence            9999999999999985

Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3209|consensus

Probab=99.93  E-value=4.8e-25  Score=246.76  Aligned_cols=231  Identities=23%  Similarity=0.304  Sum_probs=163.8

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV   97 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~   97 (774)
                      ....|.|.|+|++|+||||.|......+. --|.+|.+||||+++|+|++||+|++|||++|.+++|...|+++|.+|-.
T Consensus       751 ~~~~yDV~lhR~ENeGFGFVi~sS~~kp~-sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGls  829 (984)
T KOG3209|consen  751 PSGPYDVVLHRKENEGFGFVIMSSQNKPE-SGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLS  829 (984)
T ss_pred             CCCCeeeEEecccCCceeEEEEecccCCC-CCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCce
Confidence            34489999999999999999998766542 22999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeecccccceeeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEE
Q psy4897          98 VELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRI  177 (774)
Q Consensus        98 V~L~V~R~~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~  177 (774)
                      |+|+|...............+...+....-...+ ....+..   .....+....|.......    ..-.......-.+
T Consensus       830 VtLtIip~ee~~~~~~~~sa~~~s~~t~~~~~~q-~~glp~~---~~s~~~~~pqpdt~~~~~----~~~r~~qn~~~~~  901 (984)
T KOG3209|consen  830 VTLTIIPPEEAGPPTSMTSAEKQSPFTQNGPYEQ-QYGLPGP---RPSVYEEHPQPDTFQGLS----INDRMSQNGDLYT  901 (984)
T ss_pred             EEEEEcChhccCCCCCCcchhhcCcccccCCHhH-ccCCCCC---CccccccCCCCcccccee----ccccccccCCeeE
Confidence            9999976432211111111110000000000000 0000000   000011111110000000    0000122334678


Q ss_pred             EEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEE
Q psy4897         178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK  257 (774)
Q Consensus       178 V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~  257 (774)
                      |++.+ +..+|||+|+||++.++++||-++..++||.++|++++||+|++|||++.++++|+.++++||+.+..|.|.++
T Consensus       902 VelEr-G~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~vll~Lr  980 (984)
T KOG3209|consen  902 VELER-GAKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRRVLLLLR  980 (984)
T ss_pred             EEeec-cccccceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeEEEEEec
Confidence            88887 57899999999999999999999999999999999999999999999999999999999999999888888876


Q ss_pred             E
Q psy4897         258 Y  258 (774)
Q Consensus       258 R  258 (774)
                      |
T Consensus       981 ~  981 (984)
T KOG3209|consen  981 R  981 (984)
T ss_pred             c
Confidence            5

>KOG3209|consensus

Probab=99.88  E-value=6.8e-22  Score=221.72  Aligned_cols=192  Identities=28%  Similarity=0.394  Sum_probs=155.8

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc--Cce
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GKV   97 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a--g~~   97 (774)
                      +-.+|.| ++...||||.|-||.+.+.+|+|..|.+.++|+++|+|+.||.|+.|||++|.+.+|.+++.++..+  ...
T Consensus       649 k~ldV~L-~rkesGFGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArngh  727 (984)
T KOG3209|consen  649 KELDVFL-RRKESGFGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGH  727 (984)
T ss_pred             cceeEEE-EeeccccceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCc
Confidence            4455666 5566799999999999999999999999999999999999999999999999999999999999976  447


Q ss_pred             EEEEeeecccccceeeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEE
Q psy4897          98 VELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRI  177 (774)
Q Consensus        98 V~L~V~R~~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~  177 (774)
                      |.|+|.|...- +       .                  ...                   ++..      ......++.
T Consensus       728 V~LtVRRkv~~-~-------~------------------~~r-------------------sp~~------s~~~~~~yD  756 (984)
T KOG3209|consen  728 VNLTVRRKVRT-G-------P------------------ARR-------------------SPRN------SAAPSGPYD  756 (984)
T ss_pred             eEEEEeeeeee-c-------c------------------ccC-------------------Cccc------ccCCCCCee
Confidence            99999875311 0       0                  000                   0000      001123677


Q ss_pred             EEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEE
Q psy4897         178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK  257 (774)
Q Consensus       178 V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~  257 (774)
                      |.|.+.++.+|||.|..... +.+--|.+|.+||||+++|+|++||+|++|||+++.+++|.++|++||.+|-.|+|+|.
T Consensus       757 V~lhR~ENeGFGFVi~sS~~-kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIi  835 (984)
T KOG3209|consen  757 VVLHRKENEGFGFVIMSSQN-KPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTII  835 (984)
T ss_pred             eEEecccCCceeEEEEeccc-CCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEEEc
Confidence            88999999999999865432 33334999999999999999999999999999999999999999999999999999998


Q ss_pred             Eeccccc
Q psy4897         258 YLREVTP  264 (774)
Q Consensus       258 R~~~~~~  264 (774)
                      ...+..+
T Consensus       836 p~ee~~~  842 (984)
T KOG3209|consen  836 PPEEAGP  842 (984)
T ss_pred             ChhccCC
Confidence            6655443

>KOG3549|consensus

Probab=99.85  E-value=1.1e-21  Score=205.79  Aligned_cols=309  Identities=24%  Similarity=0.302  Sum_probs=194.5

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV   98 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V   98 (774)
                      ..-++|++.|+.-+|||++|+||.+.+.+++|++|.++-+|+..|.|.+||.|++|||+.|+.++|+++|++|+++|+.|
T Consensus        53 s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeV  132 (505)
T KOG3549|consen   53 SKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEV  132 (505)
T ss_pred             CCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEE
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeecccccceeeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEE
Q psy4897          99 ELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRII  178 (774)
Q Consensus        99 ~L~V~R~~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V  178 (774)
                      +|+|..-..-...+.           ..|..+..........++|...+|...+-+....++..++.|.......++|..
T Consensus       133 tlTV~~lr~ApaFLk-----------lpL~~~~p~SD~ssg~sspl~DsGlhln~ns~T~s~Scss~P~s~~~r~EKRW~  201 (505)
T KOG3549|consen  133 TLTVKHLRAAPAFLK-----------LPLTKDTPDSDNSSGCSSPLADSGLHLNVNSGTISRSCSSSPMSICSRPEKRWT  201 (505)
T ss_pred             EEEeHhhhcCcHHhc-----------CccCCCCCCccccccccccccccceeecccCCCccCCCCCCCCCCCCchhhhhh
Confidence            999953211111111           111111110000011111112222111111111111112222222333344444


Q ss_pred             EEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCC-CCEEEEECCeecCC---CCHHHHHHHHHH-cCcceE
Q psy4897         179 RVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYV-GDAILSVNGEDLRE---ATHDEAVKALKR-AGKLVE  253 (774)
Q Consensus       179 ~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~-GD~IlaVNG~~V~~---~t~~e~v~~Lk~-~g~~V~  253 (774)
                      .+..                 .|+.+++|.+--+.-.  .|+- -=+++++||+...-   .+.++..++|+. ..+.+.
T Consensus       202 D~~~-----------------vPL~mar~srY~~GTd--klRqNAFeV~aldGvstGii~c~~a~d~~dWL~ait~Ni~~  262 (505)
T KOG3549|consen  202 DVVA-----------------VPLMMARVSRYIYGTD--KLRQNAFEVRALDGVSTGIIHCDEAADLSDWLKAITDNIVG  262 (505)
T ss_pred             hhhh-----------------hHHHHHHHHhhccCch--hhhhccceEEeecccccceeEEhhhhHHHHHHHHHHHHHHH
Confidence            3322                 2333333322111111  1332 35788999988533   356777888887 567788


Q ss_pred             EEEEEecccccccccCcccccccccccCC------------CCCCCCCC---CC-CCCCCCCCcC-----cccceeeEee
Q psy4897         254 LEVKYLREVTPYFRKASIISEVGWELQRG------------FLSDSPPS---PS-PQSSQRADTR-----YLPLQLCYLV  312 (774)
Q Consensus       254 L~V~R~~~~~~~~~~~~~~~~l~w~~~~~------------~~~~~~~~---~~-~~~~~~~~~~-----~ipl~~~~l~  312 (774)
                      |+...++..+..+.....+.++||..+..            |..++++.   +. ||...+.-.+     .+---||++.
T Consensus       263 LT~~nmK~~Nrnf~v~~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~  342 (505)
T KOG3549|consen  263 LTHLNMKLYNRNFAVGEQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIV  342 (505)
T ss_pred             HHHHHHHHHhcCCCccceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHh
Confidence            88888888888787777889999966531            11133332   22 2222222222     1223688889


Q ss_pred             ecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         313 RNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       313 R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      +.....|.|.+||-|.+..|.+ .++..+..+++.+|-|+.++++-
T Consensus       343 Kdsd~~D~R~~CF~~qs~~ge~-~yfsVEl~seLa~wE~sfq~Atf  387 (505)
T KOG3549|consen  343 KDSDTVDSRQHCFLLQSSGGEP-RYFSVELRSELARWENSFQAATF  387 (505)
T ss_pred             ccccccccccceEEEEcCCCCc-eEEEEehhhHHHHHHHHHhhHHh
Confidence            9888899999999999999985 44566777888888888777654

>KOG3580|consensus

Probab=99.81  E-value=4.5e-19  Score=195.79  Aligned_cols=234  Identities=21%  Similarity=0.244  Sum_probs=157.2

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCC------CeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHH
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKM------PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL   91 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~------gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lL   91 (774)
                      ..+.++|+|.+.+..||||.|.||++++.      .|+|+.|.||+||+  |.||.||+|+.|||++++++.|.-|++.|
T Consensus         6 IWEQhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQqL   83 (1027)
T KOG3580|consen    6 IWEQHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQQL   83 (1027)
T ss_pred             hhhhheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHHHH
Confidence            46789999999999999999999999863      59999999999998  78999999999999999999999999999


Q ss_pred             HhcCceEEEEeeecccccceeeeeecccee----eeeeecccccc-----cccccCCC--------C-----Cc------
Q psy4897          92 KRAGKVVELEVGVGYGRCGTLETYVRGQWY----KVFVSLEEDYI-----SITLDENY--------D-----NS------  143 (774)
Q Consensus        92 k~ag~~V~L~V~R~~~ks~~~~~~~~~~~~----~~~~tL~~~~l-----sis~~~~~--------~-----~~------  143 (774)
                      +++|+...++|.|...-    .+.......    +....-.++..     .......+        +     .+      
T Consensus        84 rksgK~A~ItvkRprkv----qvpa~~asPp~s~~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~  159 (1027)
T KOG3580|consen   84 RKSGKVAAITVKRPRKV----QVPALQASPPLSQDDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPH  159 (1027)
T ss_pred             HhhccceeEEeccccee----eccccCCCCCCCCccccccchhccCcccccccccccccccccCCcccccccccccCCcc
Confidence            99999999999875311    100000000    00000000000     00000000        0     00      


Q ss_pred             -ccccC--cCCCC----CCCCCCcCCCCCCCCCc-cccceEEEEEec-cCCCCcceEEeCCCCCCCCeEEEEecCCChhh
Q psy4897         144 -TVLNG--TLNSN----TVDSISSFMDTVDIPDS-VENQKRIIRVKK-SENNGLGISIKGGKENKMPILISKIFKGMAAD  214 (774)
Q Consensus       144 -t~~~g--~l~~p----~~~s~s~~~~s~~~pe~-~~~~~r~V~L~k-~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~  214 (774)
                       ...++  .+..+    ...+..-.....+.|+. ....+..+.|.| ..+..+|+.+.      ..|||..|...+.|+
T Consensus       160 ~R~rsrer~ls~~~~gprs~~r~~~ss~~~~p~p~~~~~p~kv~LvKsR~nEEyGlrLg------SqIFvKeit~~gLAa  233 (1027)
T KOG3580|consen  160 ERARSRERDLSRDRRGPRSRSREHPSSRSPSPEPRGRPGPIKVLLVKSRANEEYGLRLG------SQIFVKEITRTGLAA  233 (1027)
T ss_pred             ccccccccccccCCCCCcccccccccCCCCCCCccCCCCcceEEEEeeccchhhccccc------chhhhhhhcccchhh
Confidence             00000  00100    00000000111122211 111223334433 35678888774      458999999999999


Q ss_pred             hccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecccc
Q psy4897         215 QTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT  263 (774)
Q Consensus       215 ~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~~~  263 (774)
                      +.|+|+.||+|++|||+...+++..++..+|.++.+.+.|+|.|+...+
T Consensus       234 rdgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~qt  282 (1027)
T KOG3580|consen  234 RDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQT  282 (1027)
T ss_pred             ccCCcccccEEEEECcEeeccccchhHHHHHHhccCceEEEEEecCCce
Confidence            9999999999999999999999999999999999899999999987654

>KOG3580|consensus

Probab=99.63  E-value=4.1e-15  Score=164.88  Aligned_cols=236  Identities=21%  Similarity=0.261  Sum_probs=154.1

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV   98 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V   98 (774)
                      ..+..+.++++.++.||+.+.      .-|||+.|...+.|++.|+|+.||.||.|||+..++++..++..++.++...+
T Consensus       198 ~p~kv~LvKsR~nEEyGlrLg------SqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL  271 (1027)
T KOG3580|consen  198 GPIKVLLVKSRANEEYGLRLG------SQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKL  271 (1027)
T ss_pred             CcceEEEEeeccchhhccccc------chhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCce
Confidence            345556667788999999884      35999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeecccccceeeeeeccceee--e---eeeccccccc-------cc----------ccCCCCC----cc--cccCcC
Q psy4897          99 ELEVGVGYGRCGTLETYVRGQWYK--V---FVSLEEDYIS-------IT----------LDENYDN----ST--VLNGTL  150 (774)
Q Consensus        99 ~L~V~R~~~ks~~~~~~~~~~~~~--~---~~tL~~~~ls-------is----------~~~~~~~----~t--~~~g~l  150 (774)
                      .|+|.|+..........+.+....  .   ..+......+       ..          ..+.+++    +.  ...|..
T Consensus       272 ~lvVlRD~~qtLiNiP~l~d~dSe~~disEi~tms~rs~spp~rrs~~~s~d~~s~s~h~p~~Ps~r~~~~~R~s~~gat  351 (1027)
T KOG3580|consen  272 QLVVLRDSQQTLINIPSLNDSDSEIEDISEIETMSDRSFSPPERRSQYSSYDYHSSSEHLPERPSSREDTPSRLSRMGAT  351 (1027)
T ss_pred             EEEEEecCCceeeecCCCccccccccchhhhhccccccCCCchhhhhccCccccCchhcCCCCCCccccchhhcccCCCC
Confidence            999999754332211111110000  0   0000000000       00          0000000    00  000000


Q ss_pred             ----------CCCCCC--CCCcC---CCCCCCCC-----------------ccccceEEEEEeccCCCCcceEEeCCCCC
Q psy4897         151 ----------NSNTVD--SISSF---MDTVDIPD-----------------SVENQKRIIRVKKSENNGLGISIKGGKEN  198 (774)
Q Consensus       151 ----------~~p~~~--s~s~~---~~s~~~pe-----------------~~~~~~r~V~L~k~~~~~LGfsi~gg~~~  198 (774)
                                ......  ..++.   ....+.|.                 ......++|...|  +...|+.++||  +
T Consensus       352 ~tPvks~~d~~~~~V~e~t~e~~~~q~p~lP~pk~~~~~~~~pS~~~m~~ygysP~tk~VrF~K--GdSvGLRLAGG--N  427 (1027)
T KOG3580|consen  352 PTPVKSTGDIAGTVVPETTKEPRYQQEPPLPQPKAAPRTFLRPSPEDMAIYGYSPNTKMVRFKK--GDSVGLRLAGG--N  427 (1027)
T ss_pred             CCCccCccccCCccccccccCcccccCCCCCCcccCcceeeecCHHHHHHhcCCCCceeEEeec--CCeeeeEeccC--C
Confidence                      000000  00000   00011111                 0112345566555  67899999998  5


Q ss_pred             CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEecccccc
Q psy4897         199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREVTPY  265 (774)
Q Consensus       199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~~~~  265 (774)
                      ..||||+.|..|+||++.| |+.||+|+.||.++..++..+++|..|-.  .|..|+|+.++..+++.-
T Consensus       428 DVGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~k~Dvyr~  495 (1027)
T KOG3580|consen  428 DVGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQSKADVYRD  495 (1027)
T ss_pred             ceeEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhhhhHHHHH
Confidence            7899999999999999998 99999999999999999999999999887  778888888776665543

>KOG3605|consensus

Probab=99.62  E-value=1.2e-15  Score=171.03  Aligned_cols=178  Identities=21%  Similarity=0.375  Sum_probs=149.1

Q ss_pred             CccccccCCCccccccCCCCcEEEEEEeecCCcccEEEE-ccCCCCC-CeEEEEecCCCHHhhhCCCCCCCEEEEECCEe
Q psy4897           1 FRTQLVLGGPTEAFFFSSRDFYSENYKYTENNGLGISIK-GGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGED   78 (774)
Q Consensus         1 ~~~~l~~~~~~~~~~~~s~~~~~V~l~rk~~~gLGfsI~-GG~e~~~-gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~   78 (774)
                      +++|-++|..++.| +++...++|.+.|..++.||+.|+ .|...-. .++|..+..++||+++|.|.+||+|++|||.+
T Consensus       627 lNsQei~gDeLe~F-akkE~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~S  705 (829)
T KOG3605|consen  627 LNSQEIFGDELEHF-AKKENQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTS  705 (829)
T ss_pred             cchhhhhccHHHHh-hhhcccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCce
Confidence            47888899888888 999999999999999999999987 3444333 38889999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHhcC--ceEEEEeeecccccceeeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCCCC
Q psy4897          79 LREATHDEAVKALKRAG--KVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVD  156 (774)
Q Consensus        79 V~~~sh~eaV~lLk~ag--~~V~L~V~R~~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~  156 (774)
                      +.++....+..++|...  ..|+|.|.+=.                                                  
T Consensus       706 LVGLPLstcQs~Ik~~KnQT~VkltiV~cp--------------------------------------------------  735 (829)
T KOG3605|consen  706 LVGLPLSTCQSIIKGLKNQTAVKLNIVSCP--------------------------------------------------  735 (829)
T ss_pred             eccccHHHHHHHHhcccccceEEEEEecCC--------------------------------------------------
Confidence            99999999999999764  45777775311                                                  


Q ss_pred             CCCcCCCCCCCCCccccceEEEEEecc-CCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCC
Q psy4897         157 SISSFMDTVDIPDSVENQKRIIRVKKS-ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE  235 (774)
Q Consensus       157 s~s~~~~s~~~pe~~~~~~r~V~L~k~-~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~  235 (774)
                                       .+.+|.+.+. ....|||++..|       +|+.+.+|+.|++-| +++|-+|++|||++|..
T Consensus       736 -----------------PV~~V~I~RPd~kyQLGFSVQNG-------iICSLlRGGIAERGG-VRVGHRIIEINgQSVVA  790 (829)
T KOG3605|consen  736 -----------------PVTTVLIRRPDLRYQLGFSVQNG-------IICSLLRGGIAERGG-VRVGHRIIEINGQSVVA  790 (829)
T ss_pred             -----------------CceEEEeecccchhhccceeeCc-------EeehhhcccchhccC-ceeeeeEEEECCceEEe
Confidence                             1334444443 356899999887       899999999999976 99999999999999999


Q ss_pred             CCHHHHHHHHHHcCcceEE
Q psy4897         236 ATHDEAVKALKRAGKLVEL  254 (774)
Q Consensus       236 ~t~~e~v~~Lk~~g~~V~L  254 (774)
                      ..|+.+|++|-.+-.++.+
T Consensus       791 ~pHekIV~lLs~aVGEIhM  809 (829)
T KOG3605|consen  791 TPHEKIVQLLSNAVGEIHM  809 (829)
T ss_pred             ccHHHHHHHHHHhhhhhhh
Confidence            9999999999986555544

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=99.53  E-value=2.5e-13  Score=154.13  Aligned_cols=166  Identities=23%  Similarity=0.284  Sum_probs=110.2

Q ss_pred             CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecccccceeeeeeccceeeee
Q psy4897          45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVF  124 (774)
Q Consensus        45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~~  124 (774)
                      ..|++|..|.++|||+++| |++||+|++|||++|.++.+..........++.++|+|.|++.. ..+.           
T Consensus       256 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~R~g~~-~~~~-----------  322 (428)
T TIGR02037       256 QRGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGILRKGKE-KTIT-----------  322 (428)
T ss_pred             CCceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEE-EEEE-----------
Confidence            3689999999999999998 99999999999999998765444433345688999999886522 1111           


Q ss_pred             eecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEEEEeccCCCCcceEEeCCCCCCCCeEE
Q psy4897         125 VSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILI  204 (774)
Q Consensus       125 ~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~I  204 (774)
                      ..+....     ...             ..          .   ...........+.......+++.     ....+++|
T Consensus       323 v~l~~~~-----~~~-------------~~----------~---~~~~lGi~~~~l~~~~~~~~~l~-----~~~~Gv~V  366 (428)
T TIGR02037       323 VTLGASP-----EEQ-------------AS----------S---SNPFLGLTVANLSPEIRKELRLK-----GDVKGVVV  366 (428)
T ss_pred             EEECcCC-----Ccc-------------cc----------c---cccccceEEecCCHHHHHHcCCC-----cCcCceEE
Confidence            1110000     000             00          0   00000011111111111112221     11257999


Q ss_pred             EEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccc
Q psy4897         205 SKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREV  262 (774)
Q Consensus       205 s~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~  262 (774)
                      ..|.++++|+++| |++||+|++|||++|.+  .+++.+++++  .++.+.|+|.|.+..
T Consensus       367 ~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s--~~d~~~~l~~~~~g~~v~l~v~R~g~~  423 (428)
T TIGR02037       367 TKVVSGSPAARAG-LQPGDVILSVNQQPVSS--VAELRKVLDRAKKGGRVALLILRGGAT  423 (428)
T ss_pred             EEeCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            9999999999998 99999999999999987  7899999986  578899999987653

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10139 serine endoprotease; Provisional

Probab=99.52  E-value=3.3e-13  Score=153.86  Aligned_cols=158  Identities=23%  Similarity=0.281  Sum_probs=107.3

Q ss_pred             CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecccccceeeeeeccceeeee
Q psy4897          45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVF  124 (774)
Q Consensus        45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~~  124 (774)
                      ..|++|..|.++|||+++| |++||+|++|||++|.++..........+.++.+.|+|.|++.. ..+.+.         
T Consensus       289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~V~R~G~~-~~l~v~---------  357 (455)
T PRK10139        289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKP-LEVEVT---------  357 (455)
T ss_pred             CCceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEE-EEEEEE---------
Confidence            4689999999999999998 99999999999999998754433222235688999999886521 111111         


Q ss_pred             eecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEEEEeccCCCCcceEEeCC--CCCCCCe
Q psy4897         125 VSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGG--KENKMPI  202 (774)
Q Consensus       125 ~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L~k~~~~~LGfsi~gg--~~~~~pi  202 (774)
                        +...       ..  ......+         .        .|                 ...|+.+...  .....++
T Consensus       358 --~~~~-------~~--~~~~~~~---------~--------~~-----------------~~~g~~l~~~~~~~~~~Gv  392 (455)
T PRK10139        358 --LDTS-------TS--SSASAEM---------I--------TP-----------------ALQGATLSDGQLKDGTKGI  392 (455)
T ss_pred             --ECCC-------CC--ccccccc---------c--------cc-----------------cccccEecccccccCCCce
Confidence              1000       00  0000000         0        00                 0001111100  0013578


Q ss_pred             EEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecc
Q psy4897         203 LISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE  261 (774)
Q Consensus       203 ~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~  261 (774)
                      +|..|.+++||+++| |++||+|++|||+++.+  ++++.+++++.++.+.|+|.|.++
T Consensus       393 ~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~  448 (455)
T PRK10139        393 KIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQIVRGNE  448 (455)
T ss_pred             EEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEECCE
Confidence            999999999999998 99999999999999987  889999998866888999988765

>PRK10942 serine endoprotease; Provisional

Probab=99.52  E-value=4.6e-13  Score=153.43  Aligned_cols=154  Identities=18%  Similarity=0.225  Sum_probs=108.3

Q ss_pred             CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecccccceeeeeeccceeeee
Q psy4897          45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVF  124 (774)
Q Consensus        45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~~  124 (774)
                      ..|++|..|.++|||+++| |++||+|++|||++|.++............++.+.|+|.|++.. ..+.+          
T Consensus       310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~v~R~G~~-~~v~v----------  377 (473)
T PRK10942        310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKP-VNVNV----------  377 (473)
T ss_pred             CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCeE-EEEEE----------
Confidence            4689999999999999998 99999999999999998855543333334678899999987521 11111          


Q ss_pred             eecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEEEEeccCCCCcceE---EeCCCCCCCC
Q psy4897         125 VSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGIS---IKGGKENKMP  201 (774)
Q Consensus       125 ~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L~k~~~~~LGfs---i~gg~~~~~p  201 (774)
                       ++...     ....             .              +              .....+|+.   +... ....+
T Consensus       378 -~l~~~-----~~~~-------------~--------------~--------------~~~~~lGl~g~~l~~~-~~~~g  409 (473)
T PRK10942        378 -ELQQS-----SQNQ-------------V--------------D--------------SSNIFNGIEGAELSNK-GGDKG  409 (473)
T ss_pred             -EeCcC-----cccc-------------c--------------c--------------cccccccceeeecccc-cCCCC
Confidence             11000     0000             0              0              000012211   1100 01247


Q ss_pred             eEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecc
Q psy4897         202 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE  261 (774)
Q Consensus       202 i~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~  261 (774)
                      ++|..|.++++|+++| |++||+|++|||++|.+  .+++.+++++.++.+.|+|.|.+.
T Consensus       410 vvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s--~~dl~~~l~~~~~~v~l~V~R~g~  466 (473)
T PRK10942        410 VVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKN--IAELRKILDSKPSVLALNIQRGDS  466 (473)
T ss_pred             eEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEECCE
Confidence            9999999999999998 99999999999999988  889999998877889999988764

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.51  E-value=1.2e-13  Score=120.48  Aligned_cols=80  Identities=35%  Similarity=0.605  Sum_probs=74.9

Q ss_pred             EEEEEeecCCcccEEEEccCCCC-CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEE
Q psy4897          23 SENYKYTENNGLGISIKGGKENK-MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELE  101 (774)
Q Consensus        23 ~V~l~rk~~~gLGfsI~GG~e~~-~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~  101 (774)
                      +|++.|+++++|||.+.++.+.. .+++|..|.|+|||+++| |++||+|++|||+++.++++.+++.+++.++..|+|+
T Consensus         1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~   79 (81)
T PF00595_consen    1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLT   79 (81)
T ss_dssp             EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEE
T ss_pred             CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEE
Confidence            57888889999999999998765 799999999999999999 9999999999999999999999999999999999998


Q ss_pred             ee
Q psy4897         102 VG  103 (774)
Q Consensus       102 V~  103 (774)
                      |.
T Consensus        80 V~   81 (81)
T PF00595_consen   80 VQ   81 (81)
T ss_dssp             EE
T ss_pred             EC
Confidence            73

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.50  E-value=2.4e-13  Score=155.06  Aligned_cols=153  Identities=20%  Similarity=0.259  Sum_probs=110.7

Q ss_pred             CeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecccccceeeeeeccceeeeeee
Q psy4897          47 PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVS  126 (774)
Q Consensus        47 gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~~~t  126 (774)
                      ..+|..|.|+|||+++| |++||+|++|||++|.+++........+..+++++++|.|++... ...           .+
T Consensus       127 ~~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~-~~~-----------v~  193 (449)
T PRK10779        127 RPVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQ-RRD-----------KT  193 (449)
T ss_pred             CccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccc-eEE-----------EE
Confidence            45799999999999998 999999999999999999877666666667889999999876321 111           11


Q ss_pred             cccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEE
Q psy4897         127 LEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISK  206 (774)
Q Consensus       127 L~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~  206 (774)
                      +.....     ..             .              +.           .......+|+....   ...+++|..
T Consensus       194 l~~~~~-----~~-------------~--------------~~-----------~~~~~~~lGl~~~~---~~~~~vV~~  227 (449)
T PRK10779        194 LDLRHW-----AF-------------E--------------PD-----------KQDPVSSLGIRPRG---PQIEPVLAE  227 (449)
T ss_pred             eccccc-----cc-------------C--------------cc-----------ccchhhcccccccC---CCcCcEEEe
Confidence            100000     00             0              00           00011235553221   234579999


Q ss_pred             ecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEEEEecc
Q psy4897         207 IFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELEVKYLRE  261 (774)
Q Consensus       207 V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~~~  261 (774)
                      |.++|||+++| |++||+|++|||+++.+  ++++.+.++. .++.+.++|.|.++
T Consensus       228 V~~~SpA~~AG-L~~GDvIl~Ing~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g~  280 (449)
T PRK10779        228 VQPNSAASKAG-LQAGDRIVKVDGQPLTQ--WQTFVTLVRDNPGKPLALEIERQGS  280 (449)
T ss_pred             eCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCCEEEEEEEECCE
Confidence            99999999998 99999999999999977  8899888877 66789999988765

>TIGR00054 RIP metalloprotease RseP

Probab=99.35  E-value=9e-12  Score=141.05  Aligned_cols=134  Identities=26%  Similarity=0.273  Sum_probs=101.5

Q ss_pred             CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecccccceeeeeeccceeeeee
Q psy4897          46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFV  125 (774)
Q Consensus        46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~~~  125 (774)
                      .+.+|.+|.++|||+++| |++||+|++|||+++.++.+.........  ..+.+.+.|+....            .   
T Consensus       128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~~dl~~~ia~~~--~~v~~~I~r~g~~~------------~---  189 (420)
T TIGR00054       128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGFKDVRQQIADIA--GEPMVEILAERENW------------T---  189 (420)
T ss_pred             CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhc--ccceEEEEEecCce------------E---
Confidence            578999999999999997 99999999999999998866544333333  67788887754110            0   


Q ss_pred             ecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEEEEeccCCCCcceEEeCCCCCCCCeEEE
Q psy4897         126 SLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILIS  205 (774)
Q Consensus       126 tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is  205 (774)
                                                                          +.+      .+++....   ...+++|.
T Consensus       190 ----------------------------------------------------l~v------~l~~~~~~---~~~g~vV~  208 (420)
T TIGR00054       190 ----------------------------------------------------FEV------MKELIPRG---PKIEPVLS  208 (420)
T ss_pred             ----------------------------------------------------ecc------cccceecC---CCcCcEEE
Confidence                                                                000      01111000   12357999


Q ss_pred             EecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEEEEecc
Q psy4897         206 KIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELEVKYLRE  261 (774)
Q Consensus       206 ~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~~~  261 (774)
                      .|.++|||+++| |++||+|++|||++|.+  .+++.+.++. .++.+.++|.|+++
T Consensus       209 ~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g~  262 (420)
T TIGR00054       209 DVTPNSPAEKAG-LKEGDYIQSINGEKLRS--WTDFVSAVKENPGKSMDIKVERNGE  262 (420)
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCceEEEEEECCE
Confidence            999999999998 99999999999999987  8899999887 66789999988764

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>KOG3550|consensus

Probab=99.28  E-value=8e-12  Score=118.54  Aligned_cols=77  Identities=42%  Similarity=0.591  Sum_probs=73.4

Q ss_pred             eecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeee
Q psy4897          28 YTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGV  104 (774)
Q Consensus        28 rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R  104 (774)
                      -+.+.||||.|.||++.+.+|||+.|.||+.|++.|+|+.||++++|||++|++-.|+.|+.+|+.+...|.|+|..
T Consensus        97 pktdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvklvvry  173 (207)
T KOG3550|consen   97 PKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKLVVRY  173 (207)
T ss_pred             CccccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEEEEec
Confidence            56679999999999999999999999999999999999999999999999999999999999999999999999854

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.25  E-value=3.8e-11  Score=104.64  Aligned_cols=79  Identities=38%  Similarity=0.671  Sum_probs=71.6

Q ss_pred             EEEeccCCCCcceEEeCCCCCC-CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEE
Q psy4897         178 IRVKKSENNGLGISIKGGKENK-MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEV  256 (774)
Q Consensus       178 V~L~k~~~~~LGfsi~gg~~~~-~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V  256 (774)
                      +++.+....+|||.+.++.+.. .+++|+.|.+++||+++| |++||+|++|||+++.++++++++.+++.+++.++|+|
T Consensus         2 v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V   80 (81)
T PF00595_consen    2 VTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTV   80 (81)
T ss_dssp             EEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEE
T ss_pred             EEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEE
Confidence            5677767889999999876543 689999999999999998 99999999999999999999999999999888999987


Q ss_pred             E
Q psy4897         257 K  257 (774)
Q Consensus       257 ~  257 (774)
                      +
T Consensus        81 ~   81 (81)
T PF00595_consen   81 Q   81 (81)
T ss_dssp             E
T ss_pred             C
Confidence            4

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>KOG3550|consensus

Probab=99.23  E-value=2.6e-11  Score=115.09  Aligned_cols=88  Identities=41%  Similarity=0.648  Sum_probs=81.9

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      .+|.|++.|. ..+|||.+-||++.+.||+|++|.||+.|++.|+|+.||++++|||++|.+-.|+.+|.+|+++-+.|.
T Consensus        90 hprvvelpkt-deglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvk  168 (207)
T KOG3550|consen   90 HPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVK  168 (207)
T ss_pred             CCceeecCcc-ccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEE
Confidence            4788898884 789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeccc
Q psy4897         254 LEVKYLREV  262 (774)
Q Consensus       254 L~V~R~~~~  262 (774)
                      |+|++.+.+
T Consensus       169 lvvrytpkv  177 (207)
T KOG3550|consen  169 LVVRYTPKV  177 (207)
T ss_pred             EEEecChHH
Confidence            999876543

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=99.14  E-value=5.5e-10  Score=96.73  Aligned_cols=80  Identities=39%  Similarity=0.591  Sum_probs=71.1

Q ss_pred             EEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEE
Q psy4897          22 YSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELE  101 (774)
Q Consensus        22 ~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~  101 (774)
                      +++.+.+....+|||.+.++.+...+++|..|.+++||+++| |++||+|++|||.++.++++.++..+++.....++|.
T Consensus         2 ~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~   80 (82)
T cd00992           2 RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLT   80 (82)
T ss_pred             EEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEE
Confidence            567787888999999999876555789999999999999976 9999999999999999999999999999877777776


Q ss_pred             e
Q psy4897         102 V  102 (774)
Q Consensus       102 V  102 (774)
                      |
T Consensus        81 v   81 (82)
T cd00992          81 V   81 (82)
T ss_pred             E
Confidence            5

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=99.08  E-value=1.7e-09  Score=93.76  Aligned_cols=82  Identities=39%  Similarity=0.526  Sum_probs=71.5

Q ss_pred             EEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEE
Q psy4897          22 YSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELE  101 (774)
Q Consensus        22 ~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~  101 (774)
                      ..+.+.+.. ..|||.+..+.....+++|..|.+++||+++| |++||+|++|||+++.++++.+....++.+++.+.|.
T Consensus         3 ~~~~~~~~~-~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~   80 (85)
T smart00228        3 RLVELEKGG-GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLT   80 (85)
T ss_pred             EEEEEEECC-CcccEEEECCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            456676666 99999998765433689999999999999998 9999999999999999999999999999888788888


Q ss_pred             eeec
Q psy4897         102 VGVG  105 (774)
Q Consensus       102 V~R~  105 (774)
                      +.|.
T Consensus        81 i~r~   84 (85)
T smart00228       81 VLRG   84 (85)
T ss_pred             EEeC
Confidence            8764

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.98  E-value=3.4e-09  Score=89.27  Aligned_cols=68  Identities=37%  Similarity=0.609  Sum_probs=60.2

Q ss_pred             CcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcC-ceEEEEe
Q psy4897          32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG-KVVELEV  102 (774)
Q Consensus        32 ~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag-~~V~L~V  102 (774)
                      .+|||.+.++.+  .+++|..|.+++||+++| |++||+|++|||+++.++++.++..+++... +.|+|+|
T Consensus         1 ~~~G~~~~~~~~--~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136           1 GGLGFSIRGGTE--GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CCccEEEecCCC--CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            368999987644  489999999999999987 9999999999999999999999999999864 7788776

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>KOG3553|consensus

Probab=98.88  E-value=1e-09  Score=97.67  Aligned_cols=82  Identities=30%  Similarity=0.436  Sum_probs=68.3

Q ss_pred             EEEEEEeec--------CCcccEEEEccCCCC----------CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCC
Q psy4897          22 YSENYKYTE--------NNGLGISIKGGKENK----------MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT   83 (774)
Q Consensus        22 ~~V~l~rk~--------~~gLGfsI~GG~e~~----------~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~s   83 (774)
                      ..|++++..        +-.+||.|.||.+..          .||||.+|.+||||+.+| |+.+|.|+.|||.+..-++
T Consensus        17 i~velHK~~~~d~~Gre~l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvT   95 (124)
T KOG3553|consen   17 IRVELHKLRDYDQQGRENLILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVT   95 (124)
T ss_pred             EEEEeeeehhhhcCCcEEEEEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEE
Confidence            445666543        236999999998742          589999999999999998 9999999999999999999


Q ss_pred             HHHHHHHHHhcCceEEEEeeec
Q psy4897          84 HDEAVKALKRAGKVVELEVGVG  105 (774)
Q Consensus        84 h~eaV~lLk~ag~~V~L~V~R~  105 (774)
                      |++|+..+++. ..+++.|.|.
T Consensus        96 Hd~Avk~i~k~-~vl~mLVaR~  116 (124)
T KOG3553|consen   96 HDQAVKRITKE-EVLRMLVARQ  116 (124)
T ss_pred             hHHHHHHhhHh-HHHHHHHHhh
Confidence            99999999983 4566666654

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=98.86  E-value=1.3e-08  Score=91.80  Aligned_cols=80  Identities=20%  Similarity=0.239  Sum_probs=62.2

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLAN  537 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~  537 (774)
                      ...|+++||+|++..||+|.+...+......++..+     .+....+....++|.|.++.   .++++|++|+..|+..
T Consensus        17 ~k~WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~~-----~v~~~~~~~k~~~F~I~~~~---~~~~~f~a~s~~e~~~   88 (96)
T cd01260          17 GQKWARRWFVLKGTTLYWYRSKQDEKAEGLIFLSGF-----TIESAKEVKKKYAFKVCHPV---YKSFYFAAETLDDLSQ   88 (96)
T ss_pred             ccCceeEEEEEECCEEEEECCCCCCccceEEEccCC-----EEEEchhcCCceEEEECCCC---CcEEEEEeCCHHHHHH
Confidence            568999999999999999999987665555555544     33222233355999998764   3799999999999999


Q ss_pred             HHHHHHHH
Q psy4897         538 WARTLVQA  545 (774)
Q Consensus       538 w~~~l~~~  545 (774)
                      |.++|.+|
T Consensus        89 Wi~ai~~~   96 (96)
T cd01260          89 WVNHLITA   96 (96)
T ss_pred             HHHHHHhC
Confidence            99999764

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=98.86  E-value=5.3e-09  Score=91.54  Aligned_cols=71  Identities=25%  Similarity=0.440  Sum_probs=55.8

Q ss_pred             CcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHH--HhcCceEEEEeeecc
Q psy4897          32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL--KRAGKVVELEVGVGY  106 (774)
Q Consensus        32 ~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lL--k~ag~~V~L~V~R~~  106 (774)
                      ++||+.+..-.+ ..+++|..|.++|||+++| |++||+|++|||++|.+..+  ....+  ...++.|+|+|.|+.
T Consensus         1 ~~lGv~~~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~--~~~~l~~~~~g~~v~l~v~R~g   73 (82)
T PF13180_consen    1 GGLGVTVQNLSD-TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNSSED--LVNILSKGKPGDTVTLTVLRDG   73 (82)
T ss_dssp             -E-SEEEEECSC-SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSSHHH--HHHHHHCSSTTSEEEEEEEETT
T ss_pred             CEECeEEEEccC-CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCCHHH--HHHHHHhCCCCCEEEEEEEECC
Confidence            367888875433 4689999999999999998 99999999999999977644  44444  356899999999976

...

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.83  E-value=3.3e-08  Score=85.58  Aligned_cols=80  Identities=41%  Similarity=0.655  Sum_probs=67.6

Q ss_pred             EEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEE
Q psy4897         176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELE  255 (774)
Q Consensus       176 r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~  255 (774)
                      +.+.+.+.....+||.+.+......+++|..|.++++|+++| |++||+|++|||.++.+++++++.+.++.....++|+
T Consensus         2 ~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~   80 (82)
T cd00992           2 RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLT   80 (82)
T ss_pred             EEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEE
Confidence            346666666788999998764334689999999999999987 9999999999999999888999999999876677776


Q ss_pred             E
Q psy4897         256 V  256 (774)
Q Consensus       256 V  256 (774)
                      +
T Consensus        81 v   81 (82)
T cd00992          81 V   81 (82)
T ss_pred             E
Confidence            5

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>KOG1892|consensus

Probab=98.80  E-value=9.9e-09  Score=119.57  Aligned_cols=88  Identities=33%  Similarity=0.522  Sum_probs=77.5

Q ss_pred             CCCCcEEEEEEeecCCcccEEEEccCC---CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          17 SSRDFYSENYKYTENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        17 ~s~~~~~V~l~rk~~~gLGfsI~GG~e---~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      +.-++.+|+|+|.  +|.|++|+...+   .+.||||++|.+|++|+.+|+|+.||++|+|||.++.+.+.+.|..++.+
T Consensus       930 ~~pei~~vtL~Kn--nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtr 1007 (1629)
T KOG1892|consen  930 KEPEIITVTLKKN--NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTR 1007 (1629)
T ss_pred             cCCceEEEEEecc--CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhc
Confidence            4466888888766  889999885333   35899999999999999999999999999999999999999999999999


Q ss_pred             cCceEEEEeeecc
Q psy4897          94 AGKVVELEVGVGY  106 (774)
Q Consensus        94 ag~~V~L~V~R~~  106 (774)
                      .|..|.|.|...+
T Consensus      1008 tg~vV~leVaKqg 1020 (1629)
T KOG1892|consen 1008 TGNVVHLEVAKQG 1020 (1629)
T ss_pred             cCCeEEEehhhhh
Confidence            9999999996543

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.74  E-value=1.3e-07  Score=81.89  Aligned_cols=81  Identities=40%  Similarity=0.577  Sum_probs=68.4

Q ss_pred             EEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEE
Q psy4897         177 IIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEV  256 (774)
Q Consensus       177 ~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V  256 (774)
                      .+.+.+.. ..+||.+........+++|..|.++++|+++| |++||+|++|||+++.++++.+....++..+..+.|++
T Consensus         4 ~~~~~~~~-~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i   81 (85)
T smart00228        4 LVELEKGG-GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTV   81 (85)
T ss_pred             EEEEEECC-CcccEEEECCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence            45566655 78999988653322689999999999999998 99999999999999999999999998888777888888


Q ss_pred             EEe
Q psy4897         257 KYL  259 (774)
Q Consensus       257 ~R~  259 (774)
                      .|.
T Consensus        82 ~r~   84 (85)
T smart00228       82 LRG   84 (85)
T ss_pred             EeC
Confidence            764

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=98.72  E-value=1.4e-07  Score=83.62  Aligned_cols=85  Identities=16%  Similarity=0.273  Sum_probs=71.6

Q ss_pred             CCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCC------CCcEEEEEEeCCCCceeeEEEEec
Q psy4897         457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRH------SDVIVFSVRCGTPQGVATHHLRAE  530 (774)
Q Consensus       457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~------~~~~~f~~~~~t~~g~~~~~~~~e  530 (774)
                      ....|+++|++|++..|++|.++..  .....|...++|....+......      ...++|.|.+..+   ++++|.++
T Consensus        13 ~~~~wk~r~~vL~~~~L~~~~~~~~--~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~---~~~~~~~~   87 (104)
T PF00169_consen   13 SRKKWKKRYFVLRDSYLLYYKSSKD--KSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNG---KSYLFSAE   87 (104)
T ss_dssp             SSSSEEEEEEEEETTEEEEESSTTT--TTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTS---EEEEEEES
T ss_pred             CCCCeEEEEEEEECCEEEEEecCcc--ccceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeCCC---cEEEEEcC
Confidence            3578999999999999999999986  56778888888888876554332      3349999999965   89999999


Q ss_pred             ChhHHHHHHHHHHHHH
Q psy4897         531 THRDLANWARTLVQAT  546 (774)
Q Consensus       531 t~~dl~~w~~~l~~~~  546 (774)
                      |..|+..|.++|..++
T Consensus        88 s~~~~~~W~~~i~~~~  103 (104)
T PF00169_consen   88 SEEERKRWIQAIQKAI  103 (104)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999998875

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.68  E-value=1.1e-07  Score=80.13  Aligned_cols=67  Identities=39%  Similarity=0.664  Sum_probs=58.5

Q ss_pred             CcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc-CcceEEEE
Q psy4897         187 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA-GKLVELEV  256 (774)
Q Consensus       187 ~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~-g~~V~L~V  256 (774)
                      .+||.+....+  .+++|..|.+++||+.+| |++||+|++|||+++.+++++++.+.++.. +..++|+|
T Consensus         2 ~~G~~~~~~~~--~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136           2 GLGFSIRGGTE--GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CccEEEecCCC--CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            57888876532  489999999999999987 999999999999999999999999999984 47788776

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>KOG0792|consensus

Probab=98.66  E-value=1.6e-09  Score=128.70  Aligned_cols=194  Identities=18%  Similarity=0.222  Sum_probs=131.4

Q ss_pred             CCCcceEEeCCCCCC-----CCeEEEEec-------------CCChhhhc-cCCCCCCEEEEECCeecCCCCHHHHHHHH
Q psy4897         185 NNGLGISIKGGKENK-----MPILISKIF-------------KGMAADQT-EQLYVGDAILSVNGEDLREATHDEAVKAL  245 (774)
Q Consensus       185 ~~~LGfsi~gg~~~~-----~pi~Is~V~-------------pgspA~~a-G~L~~GD~IlaVNG~~V~~~t~~e~v~~L  245 (774)
                      .+.+||.++|+.+..     .|+.+++|.             |+++|+.. -++-.||+++.|||.++....|+.++..|
T Consensus       715 ~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~i  794 (1144)
T KOG0792|consen  715 PGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLI  794 (1144)
T ss_pred             CccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHH
Confidence            788999999988765     889999999             99999775 35889999999999999999999999999


Q ss_pred             HHcC-----cceEEEEEEecccccccccCccccc-ccccccCCCCCCCCCCCCC-------CC------CCCCCcCcccc
Q psy4897         246 KRAG-----KLVELEVKYLREVTPYFRKASIISE-VGWELQRGFLSDSPPSPSP-------QS------SQRADTRYLPL  306 (774)
Q Consensus       246 k~~g-----~~V~L~V~R~~~~~~~~~~~~~~~~-l~w~~~~~~~~~~~~~~~~-------~~------~~~~~~~~ipl  306 (774)
                      ++..     +...|.+.. .......+ ...... +.-..+-.....+......       ..      ..++..+.++.
T Consensus       795 rs~r~~~~s~e~~l~~~~-~~~~~~~~-~e~~~~~~~~l~~~~la~~~~~~~~~~~~~r~~~dks~~~L~~~L~~g~v~~  872 (1144)
T KOG0792|consen  795 RSPRENITSGELMLTGRP-NAPRERLK-AEDSDEPLSQLVPESLAVDSVVEELDSGATRASLDKSCIILAQGLEDGMVFT  872 (1144)
T ss_pred             hhhhhccccccccccCCc-cccchhhh-ccccCCchhhhCCccccccCccccCcccccccchhhHHHHHHhhhhcCchHH
Confidence            8743     333333321 11111111 100000 0000000000000000000       00      12455666666


Q ss_pred             eeeEeeec----------ccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHH---hhhhhHHHHHHHhhhcC
Q psy4897         307 QLCYLVRN----------YKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHST---LHVLTLKSIAEANKILG  373 (774)
Q Consensus       307 ~~~~l~R~----------~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~n---i~~l~~~~~~~~n~~l~  373 (774)
                      ++.+++|+          ++.|..|||+.+|.++|.++.-..-++|.       ||-|+|   |+...-.....|+++++
T Consensus       873 efE~i~rkkp~~~~~~a~lpeN~~KNRyrdvlPYD~tRV~L~~~~~~-------nagYINAS~i~ipvgg~e~~YIA~QG  945 (1144)
T KOG0792|consen  873 EFEQIYRKKPGMACSIARLPENAPKNRYRDVLPYDDTRVELQPSKDN-------NAGYINASHIEIPVGGIENRYIACQG  945 (1144)
T ss_pred             HHHHHhhhCCCceeeeccccccccccccCCcCCCcCceeeeccCCCC-------CcccccceeeEeeecceeEEEEEecC
Confidence            66666666          66788899999999999997766667775       788888   88888888889999999


Q ss_pred             C--CCCCCceEEEEcc
Q psy4897         374 P--ALLGDLQLIGWLA  387 (774)
Q Consensus       374 ~--~~~~~~~~mGWl~  387 (774)
                      |  +||.+||+|.|--
T Consensus       946 PLp~T~~DFWQMVWEQ  961 (1144)
T KOG0792|consen  946 PLPHTCTDFWQMVWEQ  961 (1144)
T ss_pred             CCcchHHHHHHHHHhc
Confidence            9  9999999999973

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=98.66  E-value=1e-07  Score=83.29  Aligned_cols=70  Identities=27%  Similarity=0.533  Sum_probs=60.3

Q ss_pred             CcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-cCceEEEEeeec
Q psy4897          32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKVVELEVGVG  105 (774)
Q Consensus        32 ~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~-ag~~V~L~V~R~  105 (774)
                      .+||+.+..   +..+++|..|.+++||+++| |++||+|++|||+++.++++.++..+++. .++.+.|++.|.
T Consensus         2 ~~lG~~~~~---~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988           2 GGIGLELKY---DDGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             eEEEEEEEE---cCCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            478888864   24679999999999999997 99999999999999999988888888865 577889999875

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=98.59  E-value=2.2e-07  Score=81.26  Aligned_cols=72  Identities=26%  Similarity=0.463  Sum_probs=58.5

Q ss_pred             CcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccc
Q psy4897         187 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREV  262 (774)
Q Consensus       187 ~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~  262 (774)
                      .+|+.+..... ..+++|..|.+++||+++| |++||+|++|||+++.+  ..++...+..  .++.+.|+|.|.++.
T Consensus         2 ~lGv~~~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~~~~g~~v~l~v~R~g~~   75 (82)
T PF13180_consen    2 GLGVTVQNLSD-TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNS--SEDLVNILSKGKPGDTVTLTVLRDGEE   75 (82)
T ss_dssp             E-SEEEEECSC-SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSS--HHHHHHHHHCSSTTSEEEEEEEETTEE
T ss_pred             EECeEEEEccC-CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            36776655321 3589999999999999998 99999999999999977  7888888864  789999999997654

...

>KOG3651|consensus

Probab=98.57  E-value=1.7e-07  Score=98.40  Aligned_cols=82  Identities=26%  Similarity=0.355  Sum_probs=76.1

Q ss_pred             EEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEE
Q psy4897          22 YSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELE  101 (774)
Q Consensus        22 ~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~  101 (774)
                      .+|++.+...+-.||||.||...-..+||.+|+.++||+++|+++.||.|++|||+.|.+.+..++.++++.+-+.|.+.
T Consensus         6 ~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~Ih   85 (429)
T KOG3651|consen    6 ETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIH   85 (429)
T ss_pred             CcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEE
Confidence            46789999999999999999876667999999999999999999999999999999999999999999999999998888


Q ss_pred             ee
Q psy4897         102 VG  103 (774)
Q Consensus       102 V~  103 (774)
                      .-
T Consensus        86 yN   87 (429)
T KOG3651|consen   86 YN   87 (429)
T ss_pred             eh
Confidence            74

>KOG3571|consensus

Probab=98.56  E-value=1.2e-07  Score=105.38  Aligned_cols=88  Identities=30%  Similarity=0.370  Sum_probs=76.6

Q ss_pred             CCCCcEEEEEEeecCCcccEEEEccCCC--CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy4897          17 SSRDFYSENYKYTENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA   94 (774)
Q Consensus        17 ~s~~~~~V~l~rk~~~gLGfsI~GG~e~--~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a   94 (774)
                      -+-+|++|+|..+.-+-|||+|+|-...  ..||||+.|.+|++.+.+|++.+||.||.||.++.++++-.+||+.|+.+
T Consensus       246 mslnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREa  325 (626)
T KOG3571|consen  246 MSLNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREA  325 (626)
T ss_pred             cceeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHH
Confidence            3678999999999889999999985443  36899999999999999999999999999999999999999999999975


Q ss_pred             ---CceEEEEeee
Q psy4897          95 ---GKVVELEVGV  104 (774)
Q Consensus        95 ---g~~V~L~V~R  104 (774)
                         ...++|+|..
T Consensus       326 V~~~gPi~ltvAk  338 (626)
T KOG3571|consen  326 VSRPGPIKLTVAK  338 (626)
T ss_pred             hccCCCeEEEEee
Confidence               2346777743

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=98.50  E-value=7.3e-07  Score=79.04  Aligned_cols=80  Identities=13%  Similarity=0.220  Sum_probs=59.9

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCC-CcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHS-DVIVFSVRCGTPQGVATHHLRAETHRDLA  536 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~-~~~~f~~~~~t~~g~~~~~~~~et~~dl~  536 (774)
                      ...|+++||+|+++.|++|...+..   -..|....+|..+.+...+... ..++|.|.+++    ++++|+++|..|+.
T Consensus        13 ~~~W~kr~~~L~~~~l~~y~~~~~~---~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~----~~~~f~a~s~~~~~   85 (94)
T cd01250          13 NKEWKKRWFVLKNGQLTYHHRLKDY---DNAHVKEIDLRRCTVRHNGKQPDRRFCFEVISPT----KTWHFQADSEEERD   85 (94)
T ss_pred             CCCceEEEEEEeCCeEEEEcCCccc---ccccceEEeccceEEecCccccCCceEEEEEcCC----cEEEEECCCHHHHH
Confidence            4679999999999999999998742   1233444555444443332222 45999999875    68999999999999


Q ss_pred             HHHHHHHH
Q psy4897         537 NWARTLVQ  544 (774)
Q Consensus       537 ~w~~~l~~  544 (774)
                      .|..+|.+
T Consensus        86 ~Wi~al~~   93 (94)
T cd01250          86 DWISAIQE   93 (94)
T ss_pred             HHHHHHhc
Confidence            99999965

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=98.46  E-value=1.2e-06  Score=77.26  Aligned_cols=80  Identities=21%  Similarity=0.334  Sum_probs=63.2

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLAN  537 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~  537 (774)
                      ...|+++||+|++..|++|.+.....   ..|....+|-.+++...  ..+.++|.|.++..   ++++|.+++..|+..
T Consensus        12 ~~~W~~r~~vl~~~~L~~~~~~~~~~---~~~~~~i~l~~~~~~~~--~~~~~~F~i~~~~~---~~~~~~a~s~~e~~~   83 (91)
T cd01246          12 LKGWQKRWFVLDNGLLSYYKNKSSMR---GKPRGTILLSGAVISED--DSDDKCFTIDTGGD---KTLHLRANSEEERQR   83 (91)
T ss_pred             CCCceeeEEEEECCEEEEEecCccCC---CCceEEEEeceEEEEEC--CCCCcEEEEEcCCC---CEEEEECCCHHHHHH
Confidence            36799999999999999999987542   45666677766654332  23369999998743   799999999999999


Q ss_pred             HHHHHHHH
Q psy4897         538 WARTLVQA  545 (774)
Q Consensus       538 w~~~l~~~  545 (774)
                      |..+|..|
T Consensus        84 Wi~al~~a   91 (91)
T cd01246          84 WVDALELA   91 (91)
T ss_pred             HHHHHHhC
Confidence            99998654

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>smart00233 PH Pleckstrin homology domain

Probab=98.46  E-value=1.7e-06  Score=75.27  Aligned_cols=84  Identities=15%  Similarity=0.273  Sum_probs=69.0

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCC---CCcEEEEEEeCCCCceeeEEEEecChhH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRH---SDVIVFSVRCGTPQGVATHHLRAETHRD  534 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~---~~~~~f~~~~~t~~g~~~~~~~~et~~d  534 (774)
                      ...|+++|++|.+..|++|...+....  ..+...++|-..++......   ...++|.|.++++   +.++|+++|..|
T Consensus        15 ~~~~~~~~~~L~~~~l~~~~~~~~~~~--~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~---~~~~f~~~s~~~   89 (102)
T smart00233       15 KKSWKKRYFVLFNSTLLYYKSEKAKKD--YKPKGSIDLSGITVREAPDPDSAKKPHCFEIKTADR---RSYLLQAESEEE   89 (102)
T ss_pred             cCCceEEEEEEECCEEEEEeCCCcccc--CCCceEEECCcCEEEeCCCCccCCCceEEEEEecCC---ceEEEEcCCHHH
Confidence            467999999999999999999986433  77788888888765544332   2359999998865   799999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4897         535 LANWARTLVQAT  546 (774)
Q Consensus       535 l~~w~~~l~~~~  546 (774)
                      +..|..+|.+++
T Consensus        90 ~~~W~~~i~~~~  101 (102)
T smart00233       90 REEWVDALRKAI  101 (102)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998875

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=98.43  E-value=1.5e-06  Score=78.11  Aligned_cols=79  Identities=18%  Similarity=0.248  Sum_probs=62.0

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLAN  537 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~  537 (774)
                      -+.|+++|+||+++.|+.|.+.+....   .|....+|-.+.++.  ...++.+|.|.+++.   ++++|++++..|+..
T Consensus        12 ~k~Wk~RwFvL~~g~L~Yyk~~~~~~~---~~~G~I~L~~~~i~~--~~~~~~~F~i~~~~~---r~~~L~A~s~~e~~~   83 (91)
T cd01247          12 INGWQDRYFVLKEGNLSYYKSEAEKSH---GCRGSIFLKKAIIAA--HEFDENRFDISVNEN---VVWYLRAENSQSRLL   83 (91)
T ss_pred             cCCCceEEEEEECCEEEEEecCccCcC---CCcEEEECcccEEEc--CCCCCCEEEEEeCCC---eEEEEEeCCHHHHHH
Confidence            578999999999999999999875421   455566665555442  234568999988753   899999999999999


Q ss_pred             HHHHHHH
Q psy4897         538 WARTLVQ  544 (774)
Q Consensus       538 w~~~l~~  544 (774)
                      |.++|.+
T Consensus        84 Wi~al~~   90 (91)
T cd01247          84 WMDSVVR   90 (91)
T ss_pred             HHHHHhh
Confidence            9999975

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.42  E-value=6.6e-07  Score=77.90  Aligned_cols=62  Identities=27%  Similarity=0.421  Sum_probs=51.6

Q ss_pred             CCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceEEEEeeecc
Q psy4897          42 KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVVELEVGVGY  106 (774)
Q Consensus        42 ~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V~L~V~R~~  106 (774)
                      .+...|++|..|.++|||+++| |++||+|++|||+++.++  .+....+..  .++.+.+++.|++
T Consensus         6 ~~~~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~~--~d~~~~l~~~~~g~~v~l~v~r~g   69 (79)
T cd00991           6 AEAVAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITTL--EDFMEALKPTKPGEVITVTVLPST   69 (79)
T ss_pred             cccCCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCCH--HHHHHHHhcCCCCCEEEEEEEECC
Confidence            4455789999999999999987 999999999999999976  455566664  3788999998765

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=98.39  E-value=1.1e-06  Score=76.72  Aligned_cols=69  Identities=28%  Similarity=0.495  Sum_probs=59.2

Q ss_pred             CcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEEEEe
Q psy4897         187 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELEVKYL  259 (774)
Q Consensus       187 ~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~  259 (774)
                      ++|+.+...   ..+++|..|.+++||+++| |++||+|++|||+++.++++.++...++. .+..+.|++.|.
T Consensus         3 ~lG~~~~~~---~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988           3 GIGLELKYD---DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             EEEEEEEEc---CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            577777542   4679999999999999997 99999999999999999888999988876 577889998876

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=98.39  E-value=2.4e-06  Score=80.94  Aligned_cols=86  Identities=13%  Similarity=0.281  Sum_probs=65.4

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCc----------------
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQG----------------  521 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g----------------  521 (774)
                      ...|+++||+|++..|++|.+....     .|....+|-.+.+.........+||.|.+.+..+                
T Consensus        13 ~~~WkkRwfvL~~~~L~yyk~~~~~-----~~~g~I~L~~~~v~~~~~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~   87 (125)
T cd01252          13 VKTWKRRWFILTDNCLYYFEYTTDK-----EPRGIIPLENVSIREVEDPSKPFCFELFSPSDKQQIKACKTESDGRVVEG   87 (125)
T ss_pred             CCCeEeEEEEEECCEEEEEcCCCCC-----CceEEEECCCcEEEEcccCCCCeeEEEECCcccccccccccccccccccc
Confidence            3679999999999999999987643     4666666666554433233445999998876521                


Q ss_pred             -eeeEEEEecChhHHHHHHHHHHHHHHH
Q psy4897         522 -VATHHLRAETHRDLANWARTLVQATHS  548 (774)
Q Consensus       522 -~~~~~~~~et~~dl~~w~~~l~~~~~~  548 (774)
                       -.+++|+++|..|+..|..+|..++..
T Consensus        88 ~~~~~~~~A~s~~e~~~Wi~al~~~~~~  115 (125)
T cd01252          88 NHSVYRISAANDEEMDEWIKSIKASISP  115 (125)
T ss_pred             CceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence             157889999999999999999888754

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3553|consensus

Probab=98.35  E-value=1.5e-07  Score=83.97  Aligned_cols=70  Identities=33%  Similarity=0.521  Sum_probs=59.7

Q ss_pred             CcceEEeCCCCC----------CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEE
Q psy4897         187 GLGISIKGGKEN----------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEV  256 (774)
Q Consensus       187 ~LGfsi~gg~~~----------~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V  256 (774)
                      .+||.|-||.+.          ..|++|.+|.+||||+.+| |+.+|.|++|||-+..-++|++++..|++. ..+.++|
T Consensus        36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k~-~vl~mLV  113 (124)
T KOG3553|consen   36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITKE-EVLRMLV  113 (124)
T ss_pred             EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhHh-HHHHHHH
Confidence            368888887653          3689999999999999998 999999999999999999999999999883 4555555


Q ss_pred             EE
Q psy4897         257 KY  258 (774)
Q Consensus       257 ~R  258 (774)
                      .|
T Consensus       114 aR  115 (124)
T KOG3553|consen  114 AR  115 (124)
T ss_pred             Hh
Confidence            44

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=98.35  E-value=2.7e-06  Score=76.93  Aligned_cols=78  Identities=17%  Similarity=0.250  Sum_probs=60.3

Q ss_pred             CCceEEEEEEeccc--eeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHH
Q psy4897         458 TDRWVSIFGAVTER--ELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDL  535 (774)
Q Consensus       458 ~~~w~~~~~~l~~~--~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl  535 (774)
                      .+.|+++|+||+++  .||.|.++...     .|....+|-...++..... ...+|.|.+++    ++|+|.+++..|+
T Consensus        14 ~K~WkkRWFvL~~~~~~L~Yyk~~~d~-----~p~G~I~L~~~~~~~~~~~-~~~~F~i~t~~----r~y~l~A~s~~e~   83 (95)
T cd01265          14 LRGRRSRWFALDDRTCYLYYYKDSQDA-----KPLGRVDLSGAAFTYDPRE-EKGRFEIHSNN----EVIALKASSDKQM   83 (95)
T ss_pred             CcCceeEEEEEcCCCcEEEEECCCCcc-----cccceEECCccEEEcCCCC-CCCEEEEEcCC----cEEEEECCCHHHH
Confidence            57899999999964  68889888743     5666666666554433222 25899999875    5899999999999


Q ss_pred             HHHHHHHHHH
Q psy4897         536 ANWARTLVQA  545 (774)
Q Consensus       536 ~~w~~~l~~~  545 (774)
                      ..|+++|..+
T Consensus        84 ~~Wi~al~~~   93 (95)
T cd01265          84 NYWLQALQSK   93 (95)
T ss_pred             HHHHHHHHhh
Confidence            9999999875

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.35  E-value=1.9e-06  Score=74.48  Aligned_cols=66  Identities=26%  Similarity=0.340  Sum_probs=50.8

Q ss_pred             ccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          34 LGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        34 LGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      +|+.+..   .+.+++|..|.++|||+++| |++||+|++|||+++.++  .++...+ ..++.+.+++.|++
T Consensus         3 ~G~~~~~---~~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~~--~~~l~~~-~~~~~v~l~v~r~g   68 (80)
T cd00990           3 LGLTLDK---EEGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDAL--QDRLKEY-QAGDPVELTVFRDD   68 (80)
T ss_pred             ccEEEEc---cCCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHHH--HHHHHhc-CCCCEEEEEEEECC
Confidence            6777753   24579999999999999998 999999999999999873  2222222 35678889888764

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=98.27  E-value=5.8e-06  Score=75.96  Aligned_cols=80  Identities=11%  Similarity=0.110  Sum_probs=57.4

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeE----eeeccCC---CCCc-EEEEEEeCCCCceeeEEEEe
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVST----RLVSSSR---HSDV-IVFSVRCGTPQGVATHHLRA  529 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~----r~~~~s~---~~~~-~~f~~~~~t~~g~~~~~~~~  529 (774)
                      ...|+.+|++|++..|+.|.++....     |...-+|-..    .+....+   ..+. ++|.|.++.    ++|+|++
T Consensus        13 ~k~wkkRwFvL~~~~L~Yyk~~~d~~-----~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~----Rty~l~a   83 (103)
T cd01251          13 TEGFKKRWFTLDDRRLMYFKDPLDAF-----AKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPE----RKFLFAC   83 (103)
T ss_pred             CCCceeEEEEEeCCEEEEECCCCCcC-----cCcEEEeeccccceeEeccCCccccccccceEEEEeCC----eEEEEEC
Confidence            36799999999999999999987543     3333333211    1111111   1222 599999984    6999999


Q ss_pred             cChhHHHHHHHHHHHHH
Q psy4897         530 ETHRDLANWARTLVQAT  546 (774)
Q Consensus       530 et~~dl~~w~~~l~~~~  546 (774)
                      +|..|+..|..+|.++.
T Consensus        84 ~s~~e~~~Wi~ai~~v~  100 (103)
T cd01251          84 ETEQDRREWIAAFQNVL  100 (103)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999999875

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=98.26  E-value=4.6e-06  Score=77.12  Aligned_cols=84  Identities=12%  Similarity=0.182  Sum_probs=58.8

Q ss_pred             CCceEEEEEEeccce-------eEEecCCCCChhcccCcccccceeeEeeecc-CCCCCcEEEEEEeCCCCceeeEEEEe
Q psy4897         458 TDRWVSIFGAVTERE-------LRLYESAPWSPEAWSTPAHVFPLVSTRLVSS-SRHSDVIVFSVRCGTPQGVATHHLRA  529 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~-------l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~-s~~~~~~~f~~~~~t~~g~~~~~~~~  529 (774)
                      ..+|+++|++|++..       |+.|...+.++.....++.....+..-+... ....-.++|.+.++.    +++||.+
T Consensus        16 ~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~~----r~y~l~A   91 (108)
T cd01266          16 RTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETIV----RDLYLVA   91 (108)
T ss_pred             ccCcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcccccccccCcccceEEEEEeCC----ccEEEEE
Confidence            468999999999987       4999998877666666666532221111100 111112678888753    6999999


Q ss_pred             cChhHHHHHHHHHHHH
Q psy4897         530 ETHRDLANWARTLVQA  545 (774)
Q Consensus       530 et~~dl~~w~~~l~~~  545 (774)
                      ||..|+..|.++|-+-
T Consensus        92 ~s~ee~~~Wi~~I~~~  107 (108)
T cd01266          92 KNEEEMTLWVNCICKL  107 (108)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999999653

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=98.26  E-value=7.2e-06  Score=74.83  Aligned_cols=80  Identities=19%  Similarity=0.266  Sum_probs=61.4

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCC----CCcEEEEEEeCCCCceeeEEEEecChh
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRH----SDVIVFSVRCGTPQGVATHHLRAETHR  533 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~----~~~~~f~~~~~t~~g~~~~~~~~et~~  533 (774)
                      ...|+++|++|++..|++|.+...     ..|....+|-.+.+......    ...++|.|.++.    ++++|.+++..
T Consensus        15 ~k~WkkRwfvL~~~~L~yyk~~~~-----~~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~----rt~~~~A~s~~   85 (100)
T cd01233          15 NSGWTRRFVVVRRPYLHIYRSDKD-----PVERGVINLSTARVEHSEDQAAMVKGPNTFAVCTKH----RGYLFQALSDK   85 (100)
T ss_pred             CCCcEEEEEEEECCEEEEEccCCC-----ccEeeEEEecccEEEEccchhhhcCCCcEEEEECCC----CEEEEEcCCHH
Confidence            467999999999999999999764     35566666665554433211    234899998875    68999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy4897         534 DLANWARTLVQAT  546 (774)
Q Consensus       534 dl~~w~~~l~~~~  546 (774)
                      |+..|..+|.++.
T Consensus        86 e~~~Wi~ai~~~~   98 (100)
T cd01233          86 EMIDWLYALNPLY   98 (100)
T ss_pred             HHHHHHHHhhhhh
Confidence            9999999996653

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=98.25  E-value=2.9e-06  Score=74.62  Aligned_cols=59  Identities=31%  Similarity=0.422  Sum_probs=48.7

Q ss_pred             CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceEEEEeeecc
Q psy4897          45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVVELEVGVGY  106 (774)
Q Consensus        45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V~L~V~R~~  106 (774)
                      ..|++|..|.+++||+++| |++||+|++|||+++.++.+  ...++..  .+..+.+.+.|++
T Consensus        23 ~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~~~--~~~~l~~~~~~~~i~l~v~r~g   83 (90)
T cd00987          23 TKGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSVAD--LRRALAELKPGDKVTLTVLRGG   83 (90)
T ss_pred             CCEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEECC
Confidence            3589999999999999987 99999999999999998754  3444444  3788999998764

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.24  E-value=4.6e-06  Score=71.69  Aligned_cols=58  Identities=28%  Similarity=0.475  Sum_probs=48.2

Q ss_pred             CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc-CceEEEEeeecc
Q psy4897          46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA-GKVVELEVGVGY  106 (774)
Q Consensus        46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a-g~~V~L~V~R~~  106 (774)
                      .+++|..|.+++||+++| |++||+|++|||+++.++  .+....++.. ++.+.+++.|++
T Consensus        12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~--~~~~~~l~~~~~~~~~l~v~r~~   70 (79)
T cd00989          12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKSW--EDLVDAVQENPGKPLTLTVERNG   70 (79)
T ss_pred             cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHHCCCceEEEEEEECC
Confidence            458999999999999987 999999999999999976  4555666554 678888887754

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3552|consensus

Probab=98.23  E-value=1.2e-06  Score=102.82  Aligned_cols=78  Identities=23%  Similarity=0.399  Sum_probs=67.1

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE   99 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~   99 (774)
                      ..+.|.+.|...-||||  +.|    .+++|..|++|||+.  |.|++||+||+|||++|.+++.+.++++++.+.+.|.
T Consensus        55 ~pr~vq~~r~~~lGFgf--vag----rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~  126 (1298)
T KOG3552|consen   55 EPRQVQLQRNASLGFGF--VAG----RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVN  126 (1298)
T ss_pred             cchhhhhhcccccccee--ecC----CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcc
Confidence            35666666666555555  444    689999999999998  7899999999999999999999999999999999999


Q ss_pred             EEeeec
Q psy4897         100 LEVGVG  105 (774)
Q Consensus       100 L~V~R~  105 (774)
                      |+|.+.
T Consensus       127 ltV~qP  132 (1298)
T KOG3552|consen  127 LTVCQP  132 (1298)
T ss_pred             eEEecc
Confidence            999874

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.19  E-value=6.5e-06  Score=71.66  Aligned_cols=61  Identities=25%  Similarity=0.390  Sum_probs=53.1

Q ss_pred             CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccc
Q psy4897         199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREV  262 (774)
Q Consensus       199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~  262 (774)
                      ..+++|..|.+++||+++| |++||+|++|||.++.+  .+++...+..  .+..+.|++.|.++.
T Consensus         9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~--~~d~~~~l~~~~~g~~v~l~v~r~g~~   71 (79)
T cd00991           9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITT--LEDFMEALKPTKPGEVITVTVLPSTTK   71 (79)
T ss_pred             CCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCC--HHHHHHHHhcCCCCCEEEEEEEECCEE
Confidence            4578999999999999998 99999999999999986  7889888886  378889999886543

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=98.18  E-value=5.6e-06  Score=78.32  Aligned_cols=87  Identities=15%  Similarity=0.253  Sum_probs=64.8

Q ss_pred             CCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeecc--C---CCCCcEEEEEEeCCCC-----------
Q psy4897         457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS--S---RHSDVIVFSVRCGTPQ-----------  520 (774)
Q Consensus       457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~--s---~~~~~~~f~~~~~t~~-----------  520 (774)
                      ....|+++||+|+|..|++|..|....  -..|....+|-.+...+.  .   .....++|.|++-.+.           
T Consensus        15 ~~k~W~RRWFvL~g~~L~y~k~p~d~~--~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~   92 (122)
T cd01263          15 GFGAWHRRWCALEGGEIKYWKYPDDEK--RKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQ   92 (122)
T ss_pred             CCCCceEEEEEEeCCEEEEEcCCCccc--cCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeec
Confidence            357899999999999999999998743  367888888777654332  1   2333489999874331           


Q ss_pred             ---cee--eEEEEecChhHHHHHHHHHHHH
Q psy4897         521 ---GVA--THHLRAETHRDLANWARTLVQA  545 (774)
Q Consensus       521 ---g~~--~~~~~~et~~dl~~w~~~l~~~  545 (774)
                         +++  -|+|++||..|+..|.++|.++
T Consensus        93 ~~~~~~r~~~~lsaDt~eer~~W~~ain~~  122 (122)
T cd01263          93 CRRGIERLRVMLSADTKEERQTWLSLLNST  122 (122)
T ss_pred             cCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence               111  3889999999999999999753

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.17  E-value=9.4e-06  Score=69.79  Aligned_cols=59  Identities=29%  Similarity=0.510  Sum_probs=51.0

Q ss_pred             CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc-CcceEEEEEEecc
Q psy4897         200 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA-GKLVELEVKYLRE  261 (774)
Q Consensus       200 ~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~-g~~V~L~V~R~~~  261 (774)
                      .+++|..|.++++|+++| |++||+|++|||.++.+  ++++...+... +..+.+++.|.+.
T Consensus        12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~--~~~~~~~l~~~~~~~~~l~v~r~~~   71 (79)
T cd00989          12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKS--WEDLVDAVQENPGKPLTLTVERNGE   71 (79)
T ss_pred             cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHHCCCceEEEEEEECCE
Confidence            468999999999999997 99999999999999987  78888888774 6788888887543

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00821 PH Pleckstrin homology (PH) domain

Probab=98.14  E-value=1.1e-05  Score=69.45  Aligned_cols=82  Identities=18%  Similarity=0.268  Sum_probs=68.4

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCC-CcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHS-DVIVFSVRCGTPQGVATHHLRAETHRDLA  536 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~-~~~~f~~~~~t~~g~~~~~~~~et~~dl~  536 (774)
                      .+.|+++|++|++..|++|...+...  ...|...++|..+.+....... ..++|.|.+.++   ..++|.+++..|+.
T Consensus        13 ~~~w~~~~~~L~~~~l~~~~~~~~~~--~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~---~~~~~~~~s~~~~~   87 (96)
T cd00821          13 RKGWKRRWFVLFNDLLLYYKKKSSKK--SYKPKGSIPLSGAEVEESPDDSGRKNCFEIRTPDG---RSYLLQAESEEERE   87 (96)
T ss_pred             hCCccEEEEEEECCEEEEEECCCCCc--CCCCcceEEcCCCEEEECCCcCCCCcEEEEecCCC---cEEEEEeCCHHHHH
Confidence            37899999999999999999998655  6888888888887765543332 349999998865   79999999999999


Q ss_pred             HHHHHHHH
Q psy4897         537 NWARTLVQ  544 (774)
Q Consensus       537 ~w~~~l~~  544 (774)
                      .|..+|.+
T Consensus        88 ~W~~~l~~   95 (96)
T cd00821          88 EWIEALQS   95 (96)
T ss_pred             HHHHHHhc
Confidence            99999865

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=98.13  E-value=8.5e-06  Score=91.81  Aligned_cols=75  Identities=23%  Similarity=0.325  Sum_probs=61.2

Q ss_pred             CCcccEEEEccCCC---CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-cCceEEEEeeecc
Q psy4897          31 NNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKVVELEVGVGY  106 (774)
Q Consensus        31 ~~gLGfsI~GG~e~---~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~-ag~~V~L~V~R~~  106 (774)
                      -.|+|+.+.-....   ..+++|..|.++|||+++| |++||+|++|||++|.+++..++..+++. .++.|.|+|.|.+
T Consensus        84 ~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g  162 (389)
T PLN00049         84 VTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP  162 (389)
T ss_pred             ceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence            45788887532221   1379999999999999998 99999999999999999988888877764 5788999998754

>KOG3651|consensus

Probab=98.13  E-value=8.4e-06  Score=85.86  Aligned_cols=83  Identities=27%  Similarity=0.393  Sum_probs=73.7

Q ss_pred             EEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEE
Q psy4897         176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELE  255 (774)
Q Consensus       176 r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~  255 (774)
                      ..|+++|+..+-+||+|.||...-.=++|..|+.++||++.|+++.||.|++|||++|.+.+-.++.++|+.+-++|.+.
T Consensus         6 ~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~Ih   85 (429)
T KOG3651|consen    6 ETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIH   85 (429)
T ss_pred             CcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEE
Confidence            46788998888899999988654445799999999999999999999999999999999999999999999988888877


Q ss_pred             EEE
Q psy4897         256 VKY  258 (774)
Q Consensus       256 V~R  258 (774)
                      ...
T Consensus        86 yNK   88 (429)
T KOG3651|consen   86 YNK   88 (429)
T ss_pred             ehh
Confidence            643

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=98.11  E-value=1.5e-05  Score=73.38  Aligned_cols=78  Identities=14%  Similarity=0.278  Sum_probs=52.1

Q ss_pred             CCCceEEEEEEeccc-eeEEe-cCCCCChhcccCcccccceeeEe-eeccCC-CCCcEEEEEEeCCCCceeeEEEEecCh
Q psy4897         457 STDRWVSIFGAVTER-ELRLY-ESAPWSPEAWSTPAHVFPLVSTR-LVSSSR-HSDVIVFSVRCGTPQGVATHHLRAETH  532 (774)
Q Consensus       457 ~~~~w~~~~~~l~~~-~l~~y-~~~p~~~~~~~~~~~~~~l~~~r-~~~~s~-~~~~~~f~~~~~t~~g~~~~~~~~et~  532 (774)
                      ...+|++||++|+++ .||+| +.+|.++.-+     .-.|-.+. +..... ....++|.|.++.    ++|||.+||.
T Consensus        20 ~~K~WkrRWFvL~~~~~L~y~~d~~~~~~p~G-----~IdL~~~~~V~~~~~~~~~~~~f~I~tp~----R~f~l~Aete   90 (104)
T cd01236          20 RSKRWQRRWFILYDHGLLTYALDEMPTTLPQG-----TIDMNQCTDVVDAEARTGQKFSICILTPD----KEHFIKAETK   90 (104)
T ss_pred             eeccccceEEEEeCCCEEEEeeCCCCCcccce-----EEEccceEEEeecccccCCccEEEEECCC----ceEEEEeCCH
Confidence            578999999999965 55555 3444433333     22222222 222211 2224899999986    6999999999


Q ss_pred             hHHHHHHHHHH
Q psy4897         533 RDLANWARTLV  543 (774)
Q Consensus       533 ~dl~~w~~~l~  543 (774)
                      .|+..|.++|.
T Consensus        91 ~E~~~Wi~~l~  101 (104)
T cd01236          91 EEISWWLNMLM  101 (104)
T ss_pred             HHHHHHHHHHH
Confidence            99999999885

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=98.10  E-value=7.4e-06  Score=71.01  Aligned_cols=57  Identities=28%  Similarity=0.532  Sum_probs=47.1

Q ss_pred             CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceEEEEeeecc
Q psy4897          46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVVELEVGVGY  106 (774)
Q Consensus        46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V~L~V~R~~  106 (774)
                      .|++|..|.++|||++ | |++||+|++|||.++.++  .+...++..  .++.+.+++.|++
T Consensus         8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~~~v~l~v~r~g   66 (79)
T cd00986           8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKEA--EELIDYIQSKKEGDTVKLKVKREE   66 (79)
T ss_pred             cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECC
Confidence            4789999999999986 6 999999999999999965  445556653  5778999998765

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00900 PH-like Pleckstrin homology-like domain

Probab=98.10  E-value=1.7e-05  Score=68.71  Aligned_cols=83  Identities=19%  Similarity=0.276  Sum_probs=65.4

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCC-CCcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRH-SDVIVFSVRCGTPQGVATHHLRAETHRDLA  536 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~-~~~~~f~~~~~t~~g~~~~~~~~et~~dl~  536 (774)
                      ...|+++|++|++..|++|+..+.....+    +.+++...++...... ...++|.++...+ +-..|+|.++|..|+.
T Consensus        16 ~~~w~~~~~~l~~~~l~~~~~~~~~~~~~----~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~-~~~~~~~~~~~~~~~~   90 (99)
T cd00900          16 GKRWKRRWFFLFDDGLLLYKSDDKKEIKP----GSIPLSEISVEEDPDGSDDPNCFAIVTKDR-GRRVFVFQADSEEEAQ   90 (99)
T ss_pred             ccCceeeEEEEECCEEEEEEcCCCCcCCC----CEEEccceEEEECCCCCCCCceEEEECCCC-CcEEEEEEcCCHHHHH
Confidence            57899999999999999999999776654    5677777664333221 2349999998853 3489999999999999


Q ss_pred             HHHHHHHHH
Q psy4897         537 NWARTLVQA  545 (774)
Q Consensus       537 ~w~~~l~~~  545 (774)
                      .|..+|.++
T Consensus        91 ~W~~al~~~   99 (99)
T cd00900          91 EWVEALQQA   99 (99)
T ss_pred             HHHHHHhcC
Confidence            999998753

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=98.10  E-value=2e-05  Score=71.23  Aligned_cols=79  Identities=16%  Similarity=0.273  Sum_probs=55.7

Q ss_pred             CCceEEEEEEecc--ceeEEecCCCCChhcccCcccccceeeEeeec---cC--CC---CCcEEEEEEeCCCCceeeEEE
Q psy4897         458 TDRWVSIFGAVTE--RELRLYESAPWSPEAWSTPAHVFPLVSTRLVS---SS--RH---SDVIVFSVRCGTPQGVATHHL  527 (774)
Q Consensus       458 ~~~w~~~~~~l~~--~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~---~s--~~---~~~~~f~~~~~t~~g~~~~~~  527 (774)
                      ...|+++|++|++  ..|+.|.+...+     .|....+|-....+.   ..  .+   ....+|.+.++.    ++|+|
T Consensus        12 ~k~WkkRwFvL~~~~~~L~Yy~~~~~~-----~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~~----r~~~~   82 (101)
T cd01235          12 LKGWKPRWFVLDPDKHQLRYYDDFEDT-----AEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTSK----RTYNF   82 (101)
T ss_pred             CCCccceEEEEECCCCEEEEecCCCCC-----ccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeCC----ceEEE
Confidence            5789999999994  489999988654     444444444332221   11  01   123789887764    68999


Q ss_pred             EecChhHHHHHHHHHHHH
Q psy4897         528 RAETHRDLANWARTLVQA  545 (774)
Q Consensus       528 ~~et~~dl~~w~~~l~~~  545 (774)
                      .+|+..|+..|..+|.++
T Consensus        83 ~a~s~~e~~~Wi~ai~~~  100 (101)
T cd01235          83 LAENINEAQRWKEKIQQC  100 (101)
T ss_pred             ECCCHHHHHHHHHHHHhh
Confidence            999999999999999765

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>KOG3552|consensus

Probab=98.08  E-value=4.2e-06  Score=98.40  Aligned_cols=80  Identities=24%  Similarity=0.463  Sum_probs=68.0

Q ss_pred             cccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897         171 VENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK  250 (774)
Q Consensus       171 ~~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~  250 (774)
                      +...+|.|.+.++.  .|||.+..|    .|++|..|.+|+|+.  |.|++||+|++|||++|++++++-++++++++..
T Consensus        52 i~~~pr~vq~~r~~--~lGFgfvag----rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~  123 (1298)
T KOG3552|consen   52 IRWEPRQVQLQRNA--SLGFGFVAG----RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACES  123 (1298)
T ss_pred             ccCcchhhhhhccc--cccceeecC----CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhh
Confidence            33357778887754  555555554    789999999999996  7899999999999999999999999999999999


Q ss_pred             ceEEEEEE
Q psy4897         251 LVELEVKY  258 (774)
Q Consensus       251 ~V~L~V~R  258 (774)
                      .|.|+|.+
T Consensus       124 sv~ltV~q  131 (1298)
T KOG3552|consen  124 SVNLTVCQ  131 (1298)
T ss_pred             hcceEEec
Confidence            99999986

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=98.06  E-value=3.5e-05  Score=70.67  Aligned_cols=86  Identities=14%  Similarity=0.327  Sum_probs=59.9

Q ss_pred             CCceEEEEEEec-cceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897         458 TDRWVSIFGAVT-ERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLA  536 (774)
Q Consensus       458 ~~~w~~~~~~l~-~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~  536 (774)
                      ...|+++|++|+ ++.|+.|..-|...+....|+..+.+..+-++.. +....++|.|++-.......++|.+||..|+.
T Consensus        14 ~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~-~~~~~~~F~i~~~~~~~~~~r~f~a~s~ee~~   92 (102)
T cd01241          14 IKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKT-ERPRPNTFIIRCLQWTTVIERTFHVESPEERE   92 (102)
T ss_pred             CCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeec-cCCCcceEEEEeccCCcccCEEEEeCCHHHHH
Confidence            578999999999 8899988887766665677777776544322211 22334899998421111223577899999999


Q ss_pred             HHHHHHHH
Q psy4897         537 NWARTLVQ  544 (774)
Q Consensus       537 ~w~~~l~~  544 (774)
                      .|..+|..
T Consensus        93 eWi~ai~~  100 (102)
T cd01241          93 EWIHAIQT  100 (102)
T ss_pred             HHHHHHHh
Confidence            99999854

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>TIGR00225 prc C-terminal peptidase (prc)

Probab=98.06  E-value=9.7e-06  Score=89.47  Aligned_cols=72  Identities=28%  Similarity=0.445  Sum_probs=60.1

Q ss_pred             CCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-cCceEEEEeeecc
Q psy4897          31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKVVELEVGVGY  106 (774)
Q Consensus        31 ~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~-ag~~V~L~V~R~~  106 (774)
                      ..++|+.+...   ..+++|..|.++|||+++| |++||+|++|||++|.+++..++...++. .+..+.|+|.|.+
T Consensus        50 ~~~lG~~~~~~---~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g  122 (334)
T TIGR00225        50 LEGIGIQVGMD---DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG  122 (334)
T ss_pred             eEEEEEEEEEE---CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence            35788888632   3479999999999999998 99999999999999999977777777654 6788999998864

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.06  E-value=1.4e-05  Score=69.08  Aligned_cols=67  Identities=25%  Similarity=0.325  Sum_probs=51.1

Q ss_pred             cceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecc
Q psy4897         188 LGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE  261 (774)
Q Consensus       188 LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~  261 (774)
                      +|+.+...   ..+++|..|.++++|+++| |++||+|++|||.++.+  ..+++..+ ..+..+.|++.|.+.
T Consensus         3 ~G~~~~~~---~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g~   69 (80)
T cd00990           3 LGLTLDKE---EGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDDR   69 (80)
T ss_pred             ccEEEEcc---CCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECCE
Confidence            56666432   3468999999999999998 99999999999999976  44443332 256788898887654

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG1892|consensus

Probab=98.06  E-value=8.8e-06  Score=95.79  Aligned_cols=89  Identities=33%  Similarity=0.541  Sum_probs=76.7

Q ss_pred             cceEEEEEeccCCCCcceEEeCCC---CCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcC
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGK---ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG  249 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~---~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g  249 (774)
                      .+..+|+|.|+  +++|++|..-+   ..+.||+|.+|.+|++|+..|+|..||+++.|||.++-+.+.+.+..++-..|
T Consensus       932 pei~~vtL~Kn--nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg 1009 (1629)
T KOG1892|consen  932 PEIITVTLKKN--NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTG 1009 (1629)
T ss_pred             CceEEEEEecc--CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccC
Confidence            45677888885  88999986422   34789999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEEecccc
Q psy4897         250 KLVELEVKYLREVT  263 (774)
Q Consensus       250 ~~V~L~V~R~~~~~  263 (774)
                      ..|.|.|...+..+
T Consensus      1010 ~vV~leVaKqgAiy 1023 (1629)
T KOG1892|consen 1010 NVVHLEVAKQGAIY 1023 (1629)
T ss_pred             CeEEEehhhhhhHH
Confidence            99999997554443

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain

Probab=98.03  E-value=8.6e-07  Score=81.76  Aligned_cols=49  Identities=37%  Similarity=0.748  Sum_probs=43.3

Q ss_pred             EEEEcceeccCCCccccCCCCCCCCCCCCCCcceeeecchhhhhhhhccCCCCCCCCCCCCCC
Q psy4897         382 LIGWLARKLGQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAH  444 (774)
Q Consensus       382 ~mGWl~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~  444 (774)
                      |||||+|+..+++              ....+|||+|+|||++|+++|+++|||+|+|+.|..
T Consensus         1 hmGW~~E~~~~~~--------------~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~   49 (108)
T cd01258           1 HIGWVNEQLSGDD--------------ESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLY   49 (108)
T ss_pred             CceecccccCCCC--------------ccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhh
Confidence            7999999987642              234799999999999999999999999999999975

Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3542|consensus

Probab=98.03  E-value=7.4e-06  Score=93.51  Aligned_cols=87  Identities=23%  Similarity=0.357  Sum_probs=76.7

Q ss_pred             cCCCCcEEEEEEe-ecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy4897          16 FSSRDFYSENYKY-TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA   94 (774)
Q Consensus        16 ~~s~~~~~V~l~r-k~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a   94 (774)
                      +.....+.|++.+ .....|-|.+.||.+.+-||||..|.||+-|+++| |+.||+|++|||++.++.+...|+.+|++.
T Consensus       531 aaKAK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnn  609 (1283)
T KOG3542|consen  531 AAKAKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNN  609 (1283)
T ss_pred             hhcccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCC
Confidence            3455677888988 66789999999999999999999999999999998 999999999999999999999999999875


Q ss_pred             CceEEEEeee
Q psy4897          95 GKVVELEVGV  104 (774)
Q Consensus        95 g~~V~L~V~R  104 (774)
                       ..++|+|..
T Consensus       610 -thLtltvKt  618 (1283)
T KOG3542|consen  610 -THLTLTVKT  618 (1283)
T ss_pred             -ceEEEEEec
Confidence             456677654

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=98.01  E-value=2e-05  Score=89.09  Aligned_cols=73  Identities=25%  Similarity=0.392  Sum_probs=63.7

Q ss_pred             cCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-cCceEEEEeeec
Q psy4897          30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKVVELEVGVG  105 (774)
Q Consensus        30 ~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~-ag~~V~L~V~R~  105 (774)
                      +-+|+|+.|.-...  .++.|.++.+++||+++| |++||+|+.|||+++.+++..+++..++. .|..|+|++.|.
T Consensus        98 ~~~GiG~~i~~~~~--~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~  171 (406)
T COG0793          98 EFGGIGIELQMEDI--GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA  171 (406)
T ss_pred             cccceeEEEEEecC--CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence            45688888864322  679999999999999998 99999999999999999999999988885 588999999996

>KOG3938|consensus

Probab=97.97  E-value=1e-05  Score=83.97  Aligned_cols=76  Identities=29%  Similarity=0.469  Sum_probs=62.7

Q ss_pred             EEEEeecCCcccEEEEccCCCCCC-eEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc--CceEEE
Q psy4897          24 ENYKYTENNGLGISIKGGKENKMP-ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GKVVEL  100 (774)
Q Consensus        24 V~l~rk~~~gLGfsI~GG~e~~~g-i~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a--g~~V~L  100 (774)
                      |.+ .+....||++|.   +++.| .||+.|.+||.-++--.+++||.|-+|||++|.++.|.++..+||..  +...+|
T Consensus       130 v~v-~KsedalGlTIT---DNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftl  205 (334)
T KOG3938|consen  130 VEV-VKSEDALGLTIT---DNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTL  205 (334)
T ss_pred             EEE-EecccccceEEe---eCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEE
Confidence            444 456678999997   34433 89999999999999888999999999999999999999999999986  455555


Q ss_pred             Eee
Q psy4897         101 EVG  103 (774)
Q Consensus       101 ~V~  103 (774)
                      .+.
T Consensus       206 rLi  208 (334)
T KOG3938|consen  206 RLI  208 (334)
T ss_pred             Eee
Confidence            554

>KOG3571|consensus

Probab=97.97  E-value=2.5e-05  Score=87.30  Aligned_cols=87  Identities=28%  Similarity=0.341  Sum_probs=72.6

Q ss_pred             ccceEEEEEeccCCCCcceEEeCCCC--CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--
Q psy4897         172 ENQKRIIRVKKSENNGLGISIKGGKE--NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--  247 (774)
Q Consensus       172 ~~~~r~V~L~k~~~~~LGfsi~gg~~--~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--  247 (774)
                      .....+|.|.-....-|||+|.|-..  ...+|+|..|.++++.+..|++.+||.||+||.++..+++-+|+|+.|+.  
T Consensus       247 slnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV  326 (626)
T KOG3571|consen  247 SLNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAV  326 (626)
T ss_pred             ceeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHh
Confidence            34566777766556679999998322  25789999999999999999999999999999999999999999999997  


Q ss_pred             -cCcceEEEEEE
Q psy4897         248 -AGKLVELEVKY  258 (774)
Q Consensus       248 -~g~~V~L~V~R  258 (774)
                       ...+++|+|..
T Consensus       327 ~~~gPi~ltvAk  338 (626)
T KOG3571|consen  327 SRPGPIKLTVAK  338 (626)
T ss_pred             ccCCCeEEEEee
Confidence             45678888864

>KOG3606|consensus

Probab=97.97  E-value=1.7e-05  Score=82.64  Aligned_cols=90  Identities=28%  Similarity=0.382  Sum_probs=76.0

Q ss_pred             ceEEEEEeccC-CCCcceEEeCCC---------CCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHH
Q psy4897         174 QKRIIRVKKSE-NNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK  243 (774)
Q Consensus       174 ~~r~V~L~k~~-~~~LGfsi~gg~---------~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~  243 (774)
                      ..|.|.+.|.+ ...|||.|+.|.         +...||||+++.||+.|+.+|-|.+.|+|++|||+.|.+.+.+++..
T Consensus       158 tHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTD  237 (358)
T KOG3606|consen  158 THRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTD  237 (358)
T ss_pred             hhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHH
Confidence            45677787765 568999998754         34578999999999999999999999999999999999999999999


Q ss_pred             HHHHcCcceEEEEEEecccc
Q psy4897         244 ALKRAGKLVELEVKYLREVT  263 (774)
Q Consensus       244 ~Lk~~g~~V~L~V~R~~~~~  263 (774)
                      ++-+....+.++|+...+.+
T Consensus       238 MMvANshNLIiTVkPANQRn  257 (358)
T KOG3606|consen  238 MMVANSHNLIITVKPANQRN  257 (358)
T ss_pred             HHhhcccceEEEeccccccc
Confidence            99988788888887544433

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=97.96  E-value=2.8e-05  Score=68.31  Aligned_cols=59  Identities=29%  Similarity=0.383  Sum_probs=51.2

Q ss_pred             CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc--CcceEEEEEEecc
Q psy4897         200 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GKLVELEVKYLRE  261 (774)
Q Consensus       200 ~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~--g~~V~L~V~R~~~  261 (774)
                      .+++|..|.+++||+++| |++||+|++|||.++.+  ..++.+++...  +..+.|.+.|.+.
T Consensus        24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~--~~~~~~~l~~~~~~~~i~l~v~r~g~   84 (90)
T cd00987          24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKS--VADLRRALAELKPGDKVTLTVLRGGK   84 (90)
T ss_pred             CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            468999999999999997 99999999999999987  67888888763  7888999987653

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=97.94  E-value=5.6e-05  Score=69.82  Aligned_cols=81  Identities=19%  Similarity=0.146  Sum_probs=58.7

Q ss_pred             CCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeec---cCCC-----CCcEEEEEEeCCCCceeeEEEE
Q psy4897         457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVS---SSRH-----SDVIVFSVRCGTPQGVATHHLR  528 (774)
Q Consensus       457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~---~s~~-----~~~~~f~~~~~t~~g~~~~~~~  528 (774)
                      ...+|+++|++|++..|+.|.+.+..   -..|...-+|-..+.+.   ....     .+.++|.|.++.    +++|+.
T Consensus        17 ~~~nwKkRwFvL~~~~L~Yyk~~~~~---~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~----r~~yl~   89 (106)
T cd01238          17 SPLNYKERLFVLTKSKLSYYEGDFEK---RGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDE----GTLYVF   89 (106)
T ss_pred             CCCCceeEEEEEcCCEEEEECCCccc---ccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCC----CeEEEE
Confidence            45689999999999999999998753   22333344444334332   1111     245999999975    489999


Q ss_pred             ecChhHHHHHHHHHHH
Q psy4897         529 AETHRDLANWARTLVQ  544 (774)
Q Consensus       529 ~et~~dl~~w~~~l~~  544 (774)
                      ++|..|+..|..+|.+
T Consensus        90 A~s~~er~~WI~ai~~  105 (106)
T cd01238          90 APTEELRKRWIKALKQ  105 (106)
T ss_pred             cCCHHHHHHHHHHHHh
Confidence            9999999999999864

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=97.93  E-value=3.8e-05  Score=66.56  Aligned_cols=58  Identities=28%  Similarity=0.536  Sum_probs=49.9

Q ss_pred             CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEecc
Q psy4897         200 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLRE  261 (774)
Q Consensus       200 ~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~  261 (774)
                      .|++|..|.+++||+. | |++||+|++|||.++.+  .+++..++..  .+..+.|++.|.+.
T Consensus         8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r~g~   67 (79)
T cd00986           8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKREEK   67 (79)
T ss_pred             cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            4689999999999986 6 99999999999999986  7888888875  56788999987654

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=97.93  E-value=4.8e-05  Score=71.69  Aligned_cols=86  Identities=16%  Similarity=0.315  Sum_probs=50.5

Q ss_pred             CCceEEEEEEeccceeEEecCCC----CChhcccCcccccceeeEeeecc-----CCCC-CcEEEEEEeCCCCceeeEEE
Q psy4897         458 TDRWVSIFGAVTERELRLYESAP----WSPEAWSTPAHVFPLVSTRLVSS-----SRHS-DVIVFSVRCGTPQGVATHHL  527 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p----~~~~~~~~~~~~~~l~~~r~~~~-----s~~~-~~~~f~~~~~t~~g~~~~~~  527 (774)
                      ...|+..|++|++..|+||....    ....++......-|+....|.++     +.-. .+++|.|++.++   ..++|
T Consensus        23 ~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY~Kr~~VFrL~~~dg---~e~Lf   99 (119)
T PF15410_consen   23 KRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDYTKRKNVFRLRTADG---SEYLF   99 (119)
T ss_dssp             ---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTBTTCSSEEEEE-TTS----EEEE
T ss_pred             CCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcccccCCeEEEEEeCCC---CEEEE
Confidence            56899999999999999999832    22232222233322222333332     2222 239999998865   67999


Q ss_pred             EecChhHHHHHHHHHHHHH
Q psy4897         528 RAETHRDLANWARTLVQAT  546 (774)
Q Consensus       528 ~~et~~dl~~w~~~l~~~~  546 (774)
                      .+++..||..|..+|..++
T Consensus       100 qa~~~~~m~~Wi~~IN~~A  118 (119)
T PF15410_consen  100 QASDEEEMNEWIDAINYAA  118 (119)
T ss_dssp             E-SSHHHHHHHHHHHHHH-
T ss_pred             ECCCHHHHHHHHHHHhhhc
Confidence            9999999999999987654

>KOG4371|consensus

Probab=97.93  E-value=2.3e-05  Score=93.47  Aligned_cols=183  Identities=24%  Similarity=0.269  Sum_probs=130.5

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV   98 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V   98 (774)
                      ..+..|++.|++ +.||..|+.-   +..+.|+...-.+.-.+- .|.+||.++.|||+.++..-|.+++.+++..++.|
T Consensus      1146 p~~i~~~~~r~~-~~l~~~~a~~---~~~~~~~~~~~~~~~~~p-d~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~ 1220 (1332)
T KOG4371|consen 1146 PRVIDVELDRNE-GSLGVQIASL---SGRVCIKQLTSEPAISHP-DIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRV 1220 (1332)
T ss_pred             CccccccCCCCC-CCCCceeccC---ccceehhhcccCCCCCCC-CcchhhhhhhccceeeechhhHHHHHHHhccCceE
Confidence            345556776777 8999998743   234666666655555554 49999999999999999999999999999999999


Q ss_pred             EEEeeecccccceeeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEE
Q psy4897          99 ELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRII  178 (774)
Q Consensus        99 ~L~V~R~~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V  178 (774)
                      .|.|.|...+......                                        .++.+   .+.        ....+
T Consensus      1221 ~~~~~r~~~~~~d~~~----------------------------------------~s~~~---~~~--------~l~~~ 1249 (1332)
T KOG4371|consen 1221 VLGVQRPPPAYSDQHH----------------------------------------ASSTS---ASA--------PLISV 1249 (1332)
T ss_pred             EEEeecCCcccccchh----------------------------------------hhhhc---ccc--------hhhhh
Confidence            9999987533111000                                        00000   000        12223


Q ss_pred             EEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEE
Q psy4897         179 RVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKY  258 (774)
Q Consensus       179 ~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R  258 (774)
                      .+.+.+..++|+.+.... ...+++|..+...+.|...|.+++||+++..+|+++...+.....+.++---+.+.+++.|
T Consensus      1250 ~~~~~p~~~~~~~~~~~~-~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~~~~ 1328 (1332)
T KOG4371|consen 1250 MLLKKPMATLGLSLAKRT-MSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITVTR 1328 (1332)
T ss_pred             eeeecccccccccccccC-cCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhheehh
Confidence            445556678888775432 2467999999999988888899999999999999999988777777776655666666654

>KOG3606|consensus

Probab=97.93  E-value=2e-05  Score=81.99  Aligned_cols=75  Identities=28%  Similarity=0.385  Sum_probs=66.2

Q ss_pred             cCCcccEEEEccC---------CCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEE
Q psy4897          30 ENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVEL  100 (774)
Q Consensus        30 ~~~gLGfsI~GG~---------e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L  100 (774)
                      ...+|||-|..|.         +.-.||||+.+.||+.|+..|-|-+.|.||+|||+.|.+.+.+++-.++-.....+.+
T Consensus       169 ~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshNLIi  248 (358)
T KOG3606|consen  169 SEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHNLII  248 (358)
T ss_pred             CCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccceEE
Confidence            3579999999654         3347999999999999999999999999999999999999999999999887777888


Q ss_pred             Eeee
Q psy4897         101 EVGV  104 (774)
Q Consensus       101 ~V~R  104 (774)
                      +|..
T Consensus       249 TVkP  252 (358)
T KOG3606|consen  249 TVKP  252 (358)
T ss_pred             Eecc
Confidence            8854

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=97.91  E-value=2.5e-05  Score=83.30  Aligned_cols=73  Identities=16%  Similarity=0.073  Sum_probs=55.4

Q ss_pred             cccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        33 gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      .+|++..--.+...|+.|..+.+++||+++| |++||+|++|||+++.++.....+..-.+.++.++|+|.|++
T Consensus       178 ~lgi~p~~~~g~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~~~~~~~l~~~~~~~~v~l~V~R~G  250 (259)
T TIGR01713       178 YIRLSPVMKNDKLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDPEQAFQALQMLREETNLTLTVERDG  250 (259)
T ss_pred             eEeEEEEEeCCceeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCeEEEEEEECC
Confidence            5666654222234699999999999999998 999999999999999987553332222235678999999876

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=97.87  E-value=9.6e-05  Score=69.59  Aligned_cols=87  Identities=10%  Similarity=0.202  Sum_probs=59.2

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcc--cCcccccceeeEeeecc-CCCCCcEEEEEEeCCCCceeeEEEEecChhH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAW--STPAHVFPLVSTRLVSS-SRHSDVIVFSVRCGTPQGVATHHLRAETHRD  534 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~--~~~~~~~~l~~~r~~~~-s~~~~~~~f~~~~~t~~g~~~~~~~~et~~d  534 (774)
                      ...|+++||+|+|..|+||...-.....-  .......+|-....... ......++|.|+++..   ..|+|.+.+..|
T Consensus        23 ~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~L~~~~g---~~~lfqA~~~ee   99 (117)
T cd01230          23 KRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYSKKPHVFRLRTADW---REFLFQTSSLKE   99 (117)
T ss_pred             CCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeeccccCCCcEEEEEcCCC---CEEEEECCCHHH
Confidence            56899999999999999999874211100  11122332222221111 2233349999999865   789999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy4897         535 LANWARTLVQATH  547 (774)
Q Consensus       535 l~~w~~~l~~~~~  547 (774)
                      |..|..+|..++.
T Consensus       100 ~~~Wi~~I~~~~~  112 (117)
T cd01230         100 LQSWIERINVVAA  112 (117)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988774

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=97.86  E-value=7.5e-05  Score=68.23  Aligned_cols=81  Identities=19%  Similarity=0.380  Sum_probs=55.2

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccc--eeeEeeecc-CCCCCcEEEEEEeCCCCceeeEEEEecChhH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFP--LVSTRLVSS-SRHSDVIVFSVRCGTPQGVATHHLRAETHRD  534 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~--l~~~r~~~~-s~~~~~~~f~~~~~t~~g~~~~~~~~et~~d  534 (774)
                      ...|+++||+|++..|++|.......+.   +....|  |..+.+... +.....++|.|++...   .+|+|.+++..|
T Consensus        20 ~~~Wk~r~~vL~~~~L~~ykd~~~~~~~---~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~~---~~~~f~a~s~e~   93 (104)
T cd01253          20 NRSWDNVYGVLCGQSLSFYKDEKMAAEN---VHGEPPVDLTGAQCEVASDYTKKKHVFRLRLPDG---AEFLFQAPDEEE   93 (104)
T ss_pred             CCCcceEEEEEeCCEEEEEecCcccccC---CCCCCcEeccCCEEEecCCcccCceEEEEEecCC---CEEEEECCCHHH
Confidence            5689999999999999999976532111   111112  222222222 2223449999986533   889999999999


Q ss_pred             HHHHHHHHHH
Q psy4897         535 LANWARTLVQ  544 (774)
Q Consensus       535 l~~w~~~l~~  544 (774)
                      |..|..+|..
T Consensus        94 ~~~Wi~aL~~  103 (104)
T cd01253          94 MSSWVRALKS  103 (104)
T ss_pred             HHHHHHHHhc
Confidence            9999999854

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=97.85  E-value=8e-05  Score=68.27  Aligned_cols=80  Identities=19%  Similarity=0.264  Sum_probs=60.4

Q ss_pred             CCCceEEEEEEeccceeEEecCCCCChhcccCcc-cccceeeEeeeccCCC-----CCcEEEEEEeCCCCceeeEEEEec
Q psy4897         457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPA-HVFPLVSTRLVSSSRH-----SDVIVFSVRCGTPQGVATHHLRAE  530 (774)
Q Consensus       457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~-~~~~l~~~r~~~~s~~-----~~~~~f~~~~~t~~g~~~~~~~~e  530 (774)
                      .-.+|+.+|++|++..|+.|...+..     .|. ..-.|-..+-|+....     ....||.|.+++    ++|||.++
T Consensus        15 ~~K~WkrRwF~L~~~~L~y~K~~~~~-----~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~----rt~~l~A~   85 (101)
T cd01264          15 FIKRWKTRYFTLSGAQLLFQKGKSKD-----DPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD----KTYILKAK   85 (101)
T ss_pred             eeecceeEEEEEeCCEEEEEeccCcc-----CCCCceEEcccceEEeeccccccccccCcEEEEEcCC----ceEEEEeC
Confidence            36889999999999999999877543     233 3444444455554321     113899999986    59999999


Q ss_pred             ChhHHHHHHHHHHHH
Q psy4897         531 THRDLANWARTLVQA  545 (774)
Q Consensus       531 t~~dl~~w~~~l~~~  545 (774)
                      +..|...|.++|..|
T Consensus        86 se~e~e~WI~~i~~a  100 (101)
T cd01264          86 DEKNAEEWLQCLNIA  100 (101)
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999999876

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PRK11186 carboxy-terminal protease; Provisional

Probab=97.85  E-value=4.7e-05  Score=90.70  Aligned_cols=71  Identities=28%  Similarity=0.408  Sum_probs=58.5

Q ss_pred             CcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEEC--C---EecCCCCHHHHHHHHHh-cCceEEEEeeec
Q psy4897          32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVN--G---EDLREATHDEAVKALKR-AGKVVELEVGVG  105 (774)
Q Consensus        32 ~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVN--G---~~V~~~sh~eaV~lLk~-ag~~V~L~V~R~  105 (774)
                      .|+|+.+...   ...++|..|.|||||+++++|++||+|++||  |   .++.+++..+++.+|+. .|..|+|+|.|.
T Consensus       244 ~GIGa~l~~~---~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~  320 (667)
T PRK11186        244 EGIGAVLQMD---DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA  320 (667)
T ss_pred             eEEEEEEEEe---CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence            5677777532   3469999999999999995699999999999  4   46778888999999986 588999999874

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=97.82  E-value=0.0001  Score=67.17  Aligned_cols=81  Identities=12%  Similarity=0.043  Sum_probs=60.1

Q ss_pred             CCceEEEEEEecc----ceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChh
Q psy4897         458 TDRWVSIFGAVTE----RELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHR  533 (774)
Q Consensus       458 ~~~w~~~~~~l~~----~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~  533 (774)
                      ...|+.+|++|++    .+|++|+.++....-...++..-   ..+-||++-....+||.|.+++.+  .++|+++++ .
T Consensus        13 ~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~---~V~~v~ds~~~r~~cFel~~~~~~--~~y~~~a~~-~   86 (98)
T cd01245          13 TKLWKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDA---YLYPVHDSLFGRPNCFQIVERALP--TVYYSCRSS-E   86 (98)
T ss_pred             ccccceeEEEEecCCCCceEEEEcCCCCCCccceeecccc---EEEEccccccCCCeEEEEecCCCC--eEEEEeCCH-H
Confidence            6889999999986    99999999987544334343333   335555554555699999887531  578899999 9


Q ss_pred             HHHHHHHHHHH
Q psy4897         534 DLANWARTLVQ  544 (774)
Q Consensus       534 dl~~w~~~l~~  544 (774)
                      |...|+.+|..
T Consensus        87 er~~Wi~~l~~   97 (98)
T cd01245          87 ERDKWIESLQA   97 (98)
T ss_pred             HHHHHHHHHhc
Confidence            99999998864

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=97.80  E-value=0.00013  Score=82.19  Aligned_cols=135  Identities=23%  Similarity=0.219  Sum_probs=84.5

Q ss_pred             EEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEee-ecccccceeeeeeccceeeeeeec
Q psy4897          49 LISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVG-VGYGRCGTLETYVRGQWYKVFVSL  127 (774)
Q Consensus        49 ~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~-R~~~ks~~~~~~~~~~~~~~~~tL  127 (774)
                      +|..|.|||||+++| |++||+|++|||++|.++..  ....+  .+..+.++|. |++                     
T Consensus         1 ~I~~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw~D--~~~~l--~~e~l~L~V~~rdG---------------------   54 (433)
T TIGR03279         1 LISAVLPGSIAEELG-FEPGDALVSINGVAPRDLID--YQFLC--ADEELELEVLDANG---------------------   54 (433)
T ss_pred             CcCCcCCCCHHHHcC-CCCCCEEEEECCEECCCHHH--HHHHh--cCCcEEEEEEcCCC---------------------
Confidence            367899999999998 99999999999999998854  33333  2456777775 221                     


Q ss_pred             ccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEEEEeccCCCCcceEEeCCC-------CCCC
Q psy4897         128 EEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGK-------ENKM  200 (774)
Q Consensus       128 ~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L~k~~~~~LGfsi~gg~-------~~~~  200 (774)
                                                                    +.+.+.+.+.....||+.+....       .++.
T Consensus        55 ----------------------------------------------e~~~l~Ie~~~dedlG~~f~~~~~d~~~~C~N~C   88 (433)
T TIGR03279        55 ----------------------------------------------ESHQIEIEKDLDEDLGLEFTTALFDGLIQCNNRC   88 (433)
T ss_pred             ----------------------------------------------eEEEEEEecCCCCCCcEEeccccCCcccccCCcC
Confidence                                                          12344455555666777665422       1122


Q ss_pred             C-eEEEEecCCChhhhccCCCCCCEEE---EECCeecCCCCHHHHHHHHHHcCcceEEEEE
Q psy4897         201 P-ILISKIFKGMAADQTEQLYVGDAIL---SVNGEDLREATHDEAVKALKRAGKLVELEVK  257 (774)
Q Consensus       201 p-i~Is~V~pgspA~~aG~L~~GD~Il---aVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~  257 (774)
                      . -||.+.-||.--..  .++-.|--+   .=|=..+.+++.+|+-++++..=.++.+.|.
T Consensus        89 ~FCFidQlP~gmR~sL--Y~KDDDyRLSFL~GnyiTLTNl~~~d~~RI~~~~lspl~iSVh  147 (433)
T TIGR03279        89 PFCFIDQQPPGKRESL--YLKDDDYRLSFLYGSYLTLTNLPPAEWQRIEQLRLSPLYVSVH  147 (433)
T ss_pred             ceEeccCCCCCCcCcc--eeccCcchhhhhccceeeecCCCHHHHHHHHHcCCCCEEEEEe
Confidence            2 24444444332211  133334322   2355778889999999999885567777765

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=97.79  E-value=0.00019  Score=65.85  Aligned_cols=81  Identities=17%  Similarity=0.226  Sum_probs=61.0

Q ss_pred             ceEEEEEEeccc------eeEEecCCCCChhcccCcccccceeeEeeecc-CCCCCcEEEEEEeCCCCceeeEEEEecCh
Q psy4897         460 RWVSIFGAVTER------ELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS-SRHSDVIVFSVRCGTPQGVATHHLRAETH  532 (774)
Q Consensus       460 ~w~~~~~~l~~~------~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~-s~~~~~~~f~~~~~t~~g~~~~~~~~et~  532 (774)
                      .|+++|+||+..      -|..|++-.--......|..+-+|-.+.-|.. .....+++|.|.++.    ++++|.+||.
T Consensus        13 ~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t~d----r~f~l~aese   88 (101)
T cd01257          13 SMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADAKHRHLIALYTRD----EYFAVAAENE   88 (101)
T ss_pred             CcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccccccCeEEEEEeCC----ceEEEEeCCH
Confidence            489999999988      69999886533223466777777776654432 233334999999975    5999999999


Q ss_pred             hHHHHHHHHHHH
Q psy4897         533 RDLANWARTLVQ  544 (774)
Q Consensus       533 ~dl~~w~~~l~~  544 (774)
                      .|+..|..+|..
T Consensus        89 ~E~~~Wi~~i~~  100 (101)
T cd01257          89 AEQDSWYQALLE  100 (101)
T ss_pred             HHHHHHHHHHhh
Confidence            999999999853

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>PRK10898 serine endoprotease; Provisional

Probab=97.79  E-value=6.1e-05  Score=83.87  Aligned_cols=61  Identities=23%  Similarity=0.192  Sum_probs=49.5

Q ss_pred             CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      ..|++|..|.+++||+++| |++||+|++|||++|.++........-.+.++.+.|+|.|++
T Consensus       278 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~~l~~~l~~~~~g~~v~l~v~R~g  338 (353)
T PRK10898        278 LQGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISALETMDQVAEIRPGSVIPVVVMRDD  338 (353)
T ss_pred             CCeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            3689999999999999998 999999999999999987443322222256888999998865

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=97.78  E-value=7e-05  Score=84.47  Aligned_cols=76  Identities=22%  Similarity=0.311  Sum_probs=60.9

Q ss_pred             CCCcceEEeCCCCC---CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEEEEec
Q psy4897         185 NNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELEVKYLR  260 (774)
Q Consensus       185 ~~~LGfsi~gg~~~---~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~~  260 (774)
                      ..++|+.+......   ..+++|..|.++|||+++| |++||+|++|||++|.+++..++...++. .+..+.|+|.|.+
T Consensus        84 ~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g  162 (389)
T PLN00049         84 VTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP  162 (389)
T ss_pred             ceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence            34677766432111   1378999999999999998 99999999999999999888888888875 6788999998754


Q ss_pred             c
Q psy4897         261 E  261 (774)
Q Consensus       261 ~  261 (774)
                      .
T Consensus       163 ~  163 (389)
T PLN00049        163 E  163 (389)
T ss_pred             E
Confidence            3

>KOG0609|consensus

Probab=97.76  E-value=6.9e-05  Score=85.08  Aligned_cols=85  Identities=21%  Similarity=0.323  Sum_probs=76.0

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV   98 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V   98 (774)
                      ..+.-|.+.++.+..+|.+|+--.  ...++|..|..|+.|++.|.|++||.|++|||++|.+..-.++..+|+.+...+
T Consensus       121 ~~vriv~i~k~~~eplG~Tik~~e--~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~i  198 (542)
T KOG0609|consen  121 EAVRIVRIVKNTGEPLGATIRVEE--DTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSI  198 (542)
T ss_pred             ceeEEEEEeecCCCccceEEEecc--CCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcE
Confidence            447788898999999999998432  237999999999999999999999999999999999999999999999998999


Q ss_pred             EEEeeec
Q psy4897          99 ELEVGVG  105 (774)
Q Consensus        99 ~L~V~R~  105 (774)
                      ++.|...
T Consensus       199 tfkiiP~  205 (542)
T KOG0609|consen  199 TFKIIPS  205 (542)
T ss_pred             EEEEccc
Confidence            9999643

>TIGR00225 prc C-terminal peptidase (prc)

Probab=97.70  E-value=8.1e-05  Score=82.22  Aligned_cols=72  Identities=28%  Similarity=0.480  Sum_probs=59.6

Q ss_pred             CCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEEEEecc
Q psy4897         186 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELEVKYLRE  261 (774)
Q Consensus       186 ~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~~~  261 (774)
                      .++|+.+...   ..+++|..|.+++||+++| |++||+|++|||+++.+++..++...++. .+..+.|+|.|.+.
T Consensus        51 ~~lG~~~~~~---~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~  123 (334)
T TIGR00225        51 EGIGIQVGMD---DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGK  123 (334)
T ss_pred             EEEEEEEEEE---CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCC
Confidence            4577776532   2468999999999999998 99999999999999999877788887765 67889999987643

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=97.68  E-value=0.00011  Score=83.89  Aligned_cols=58  Identities=33%  Similarity=0.419  Sum_probs=50.3

Q ss_pred             CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceEEEEeeecc
Q psy4897          46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVVELEVGVGY  106 (774)
Q Consensus        46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V~L~V~R~~  106 (774)
                      .|++|.+|.++|||+++| |++||+|++|||++|.++  .+...++++  .++.+.|+|.|++
T Consensus       362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s~--~d~~~~l~~~~~g~~v~l~v~R~g  421 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSSV--AELRKVLDRAKKGGRVALLILRGG  421 (428)
T ss_pred             CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence            689999999999999998 999999999999999976  455666664  5788999998875

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=97.65  E-value=0.00011  Score=83.11  Aligned_cols=73  Identities=23%  Similarity=0.376  Sum_probs=64.0

Q ss_pred             CCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEEEEec
Q psy4897         185 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELEVKYLR  260 (774)
Q Consensus       185 ~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~~  260 (774)
                      -.++|+.+....  ...+.|..+.+++||+++| |++||.|++|||.++.+++.++++..|+. .|..|+|++.|..
T Consensus        99 ~~GiG~~i~~~~--~~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~  172 (406)
T COG0793          99 FGGIGIELQMED--IGGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAG  172 (406)
T ss_pred             ccceeEEEEEec--CCCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcC
Confidence            567778776532  1678999999999999999 99999999999999999999999999987 7899999999863

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=97.65  E-value=8.5e-05  Score=82.67  Aligned_cols=58  Identities=24%  Similarity=0.268  Sum_probs=49.2

Q ss_pred             CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHH--hcCceEEEEeeecc
Q psy4897          46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK--RAGKVVELEVGVGY  106 (774)
Q Consensus        46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk--~ag~~V~L~V~R~~  106 (774)
                      .|++|..|.+++||+++| |++||+|++|||++|.++..  ....++  +.++.+.|+|.|++
T Consensus       278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~d--l~~~l~~~~~g~~v~l~v~R~g  337 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIGAEE--LMDRIAETRPGSKVMVTVLRQG  337 (351)
T ss_pred             ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCEEEEEEEECC
Confidence            589999999999999998 99999999999999998744  334444  46889999998865

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=97.65  E-value=0.00028  Score=64.92  Aligned_cols=86  Identities=14%  Similarity=0.226  Sum_probs=65.1

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeecc-CCCCCcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS-SRHSDVIVFSVRCGTPQGVATHHLRAETHRDLA  536 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~-s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~  536 (774)
                      ...|+++|++|+|..|+.|.+.+.+.   ..|.....|....+... .-...+++|.+.+++..|...|||++||..+.+
T Consensus        17 ~K~~KrrwF~lk~~~L~YyK~kee~~---~~p~i~lnl~gcev~~dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya   93 (106)
T cd01237          17 LKGYKQYWFTFRDTSISYYKSKEDSN---GAPIGQLNLKGCEVTPDVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYA   93 (106)
T ss_pred             hhhheeEEEEEeCCEEEEEccchhcC---CCCeEEEecCceEEcccccccccceEEEEecCCccCCeEEEEECCCHHHHH
Confidence            46799999999999999998877432   45555555555444322 111335888898888889899999999999999


Q ss_pred             HHHHHHHHHH
Q psy4897         537 NWARTLVQAT  546 (774)
Q Consensus       537 ~w~~~l~~~~  546 (774)
                      .|..++..|.
T Consensus        94 ~Wmaa~rlas  103 (106)
T cd01237          94 KWMAACRLAS  103 (106)
T ss_pred             HHHHHHHHhh
Confidence            9999877664

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=97.63  E-value=0.00027  Score=64.54  Aligned_cols=77  Identities=13%  Similarity=0.239  Sum_probs=61.3

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeec---cCCCCCcEEEEEEeCCCCceeeEEEEecChhH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVS---SSRHSDVIVFSVRCGTPQGVATHHLRAETHRD  534 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~---~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~d  534 (774)
                      ...|+.+|++|+++.|+.|+++.      ..|..+-||-..+.|.   .......++|.|.++.    .++|+.+++..|
T Consensus        18 ~~n~KkRwF~Lt~~~L~Y~k~~~------~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~----r~~yi~a~s~~E   87 (98)
T cd01244          18 VLHFKKRYFQLTTTHLSWAKDVQ------CKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCED----DTMQLQFEAPVE   87 (98)
T ss_pred             CcCCceeEEEECCCEEEEECCCC------CceeeeEEccceEEEEEcCCcccCCCceEEEEeCC----CeEEEECCCHHH
Confidence            46899999999999999999765      3677777777766443   2233334899999985    489999999999


Q ss_pred             HHHHHHHHHH
Q psy4897         535 LANWARTLVQ  544 (774)
Q Consensus       535 l~~w~~~l~~  544 (774)
                      ...|..+|-.
T Consensus        88 ~~~Wi~al~k   97 (98)
T cd01244          88 ATDWLNALEK   97 (98)
T ss_pred             HHHHHHHHhc
Confidence            9999998853

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=97.62  E-value=0.00033  Score=65.40  Aligned_cols=84  Identities=21%  Similarity=0.280  Sum_probs=47.4

Q ss_pred             CCceEEEEEEec-cceeEEecCCCCChhc---ccCcccccceeeEe-------e--ec---cCCCCCcEEEEEEeCCCCc
Q psy4897         458 TDRWVSIFGAVT-ERELRLYESAPWSPEA---WSTPAHVFPLVSTR-------L--VS---SSRHSDVIVFSVRCGTPQG  521 (774)
Q Consensus       458 ~~~w~~~~~~l~-~~~l~~y~~~p~~~~~---~~~~~~~~~l~~~r-------~--~~---~s~~~~~~~f~~~~~t~~g  521 (774)
                      .+.|+++|+||. |+-|..|..|+..+..   ...+...++--..+       +  ++   .....+.-+|.+.|||   
T Consensus        13 ~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~T~~---   89 (112)
T PF15413_consen   13 GKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEIHLKVFSIFTPT---   89 (112)
T ss_dssp             -S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-SSEEEEEE-SS---
T ss_pred             CcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCcCCCCcEEECCC---
Confidence            578999999999 9999999994432110   00111111111111       1  11   1122223789999987   


Q ss_pred             eeeEEEEecChhHHHHHHHHHHHH
Q psy4897         522 VATHHLRAETHRDLANWARTLVQA  545 (774)
Q Consensus       522 ~~~~~~~~et~~dl~~w~~~l~~~  545 (774)
                       ++++|++||..|...|..+|+.|
T Consensus        90 -kt~~l~~~t~~d~~~Wi~aL~~~  112 (112)
T PF15413_consen   90 -KTFHLRCETREDRYDWIEALQEA  112 (112)
T ss_dssp             --EEEEEESSHHHHHHHHHHHHH-
T ss_pred             -cEEEEEECCHHHHHHHHHHHHhC
Confidence             48999999999999999999875

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=97.60  E-value=0.00019  Score=76.58  Aligned_cols=61  Identities=21%  Similarity=0.169  Sum_probs=53.9

Q ss_pred             CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccc
Q psy4897         199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREV  262 (774)
Q Consensus       199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~  262 (774)
                      ..|+.|..+.++++|+++| |++||+|++|||+++.+  .+++.+++.+  .++.++|+|.|.++.
T Consensus       190 ~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~--~~~~~~~l~~~~~~~~v~l~V~R~G~~  252 (259)
T TIGR01713       190 LEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRD--PEQAFQALQMLREETNLTLTVERDGQR  252 (259)
T ss_pred             eeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCeEEEEEEECCEE
Confidence            4689999999999999998 99999999999999988  7888888876  557899999997753

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>KOG3542|consensus

Probab=97.58  E-value=9.8e-05  Score=84.64  Aligned_cols=85  Identities=27%  Similarity=0.466  Sum_probs=73.8

Q ss_pred             ccceEEEEEecc-CCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897         172 ENQKRIIRVKKS-ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK  250 (774)
Q Consensus       172 ~~~~r~V~L~k~-~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~  250 (774)
                      ..+.|.+.+.+. ....+-|.+.||.+...+|||..|.||+.|++.| |+.||+|++|||++..+.+...+..+|++. -
T Consensus       533 KAK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnn-t  610 (1283)
T KOG3542|consen  533 KAKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNN-T  610 (1283)
T ss_pred             cccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCC-c
Confidence            446788888873 4667999999999999999999999999999998 999999999999999999999999999874 4


Q ss_pred             ceEEEEEE
Q psy4897         251 LVELEVKY  258 (774)
Q Consensus       251 ~V~L~V~R  258 (774)
                      .++|+|+.
T Consensus       611 hLtltvKt  618 (1283)
T KOG3542|consen  611 HLTLTVKT  618 (1283)
T ss_pred             eEEEEEec
Confidence            56676653

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=97.58  E-value=0.00056  Score=62.60  Aligned_cols=85  Identities=9%  Similarity=0.063  Sum_probs=55.2

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLAN  537 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~  537 (774)
                      .++|+++|+.|-+.-|+.|..-|.....=.+....++|-...|...+.....++|.|++.+    +++++.++|..|...
T Consensus        15 ~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~~~~~~~~F~I~~~~----rsf~l~A~s~eEk~~   90 (101)
T cd01219          15 TEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGDNLERPHSFLVSGKQ----RCLELQARTQKEKND   90 (101)
T ss_pred             CCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCCCCCcCceEEEecCC----cEEEEEcCCHHHHHH
Confidence            4689999999998844444422321111122222333333344332223335999998775    699999999999999


Q ss_pred             HHHHHHHHH
Q psy4897         538 WARTLVQAT  546 (774)
Q Consensus       538 w~~~l~~~~  546 (774)
                      |..+|..++
T Consensus        91 W~~ai~~~i   99 (101)
T cd01219          91 WVQAIFSII   99 (101)
T ss_pred             HHHHHHHHh
Confidence            999998875

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=97.56  E-value=0.00023  Score=81.79  Aligned_cols=58  Identities=24%  Similarity=0.362  Sum_probs=48.2

Q ss_pred             CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-cCceEEEEeeecc
Q psy4897          46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKVVELEVGVGY  106 (774)
Q Consensus        46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~-ag~~V~L~V~R~~  106 (774)
                      .+++|..|.++|||+++| |++||+|++|||++|.++..  ....++. .++.+.++|.|++
T Consensus       221 ~~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~s~~d--l~~~l~~~~~~~v~l~v~R~g  279 (449)
T PRK10779        221 IEPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLTQWQT--FVTLVRDNPGKPLALEIERQG  279 (449)
T ss_pred             cCcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcCCHHH--HHHHHHhCCCCEEEEEEEECC
Confidence            358999999999999998 99999999999999987644  4445544 5678999998875

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=97.55  E-value=0.0016  Score=63.11  Aligned_cols=88  Identities=15%  Similarity=0.094  Sum_probs=57.2

Q ss_pred             cccCCCCcEEEEEEee----cCCcccEEEEccCCC---CCCeEEEEecCCCHHhhhCCCCC-CCEEEEECCEecCCCCHH
Q psy4897          14 FFFSSRDFYSENYKYT----ENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYV-GDAILSVNGEDLREATHD   85 (774)
Q Consensus        14 ~~~~s~~~~~V~l~rk----~~~gLGfsI~GG~e~---~~gi~Vs~V~pGSpAaraG~Lqv-GD~ILsVNG~~V~~~sh~   85 (774)
                      +-.+...+++|.+.-.    +.+.||++|.--.-.   ..++-|-+|.|||||++|| |++ .|-|+.+|+..+.+....
T Consensus         4 ~~~k~~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~~~l   82 (138)
T PF04495_consen    4 YNAKGQTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDEDDL   82 (138)
T ss_dssp             EETTTSSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--STCHH
T ss_pred             EECCCCeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCHHHH
Confidence            3456677788887542    358999999844332   3579999999999999998 998 699999999988865433


Q ss_pred             HHHHHHH-hcCceEEEEeee
Q psy4897          86 EAVKALK-RAGKVVELEVGV  104 (774)
Q Consensus        86 eaV~lLk-~ag~~V~L~V~R  104 (774)
                        ...++ ..+..+.|.|..
T Consensus        83 --~~~v~~~~~~~l~L~Vyn  100 (138)
T PF04495_consen   83 --FELVEANENKPLQLYVYN  100 (138)
T ss_dssp             --HHHHHHTTTS-EEEEEEE
T ss_pred             --HHHHHHcCCCcEEEEEEE
Confidence              33343 456778888853

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>PRK10139 serine endoprotease; Provisional

Probab=97.52  E-value=0.0002  Score=82.40  Aligned_cols=58  Identities=28%  Similarity=0.365  Sum_probs=50.2

Q ss_pred             CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      .|++|..|.++|||+++| |++||+|++|||++|.++  .+...++++.++.+.|+|.|++
T Consensus       390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~v~l~v~R~g  447 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIVRGN  447 (455)
T ss_pred             CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEECC
Confidence            579999999999999998 999999999999999987  4556666665678899998875

>TIGR00054 RIP metalloprotease RseP

Probab=97.52  E-value=0.00019  Score=81.83  Aligned_cols=58  Identities=31%  Similarity=0.434  Sum_probs=49.2

Q ss_pred             CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-cCceEEEEeeecc
Q psy4897          46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKVVELEVGVGY  106 (774)
Q Consensus        46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~-ag~~V~L~V~R~~  106 (774)
                      .+++|.+|.++|||+++| |++||+|++|||++|.++  .+....++. .++.+.++|.|++
T Consensus       203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g  261 (420)
T TIGR00054       203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRSW--TDFVSAVKENPGKSMDIKVERNG  261 (420)
T ss_pred             cCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCceEEEEEECC
Confidence            478999999999999998 999999999999999976  455566655 5677899998865

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10942 serine endoprotease; Provisional

Probab=97.47  E-value=0.00025  Score=81.93  Aligned_cols=58  Identities=24%  Similarity=0.354  Sum_probs=51.1

Q ss_pred             CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      .|++|..|.++|||+++| |++||+|++|||++|.++  .+...++++.+..+.|+|.|.+
T Consensus       408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s~--~dl~~~l~~~~~~v~l~V~R~g  465 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKNI--AELRKILDSKPSVLALNIQRGD  465 (473)
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEECC
Confidence            589999999999999998 999999999999999986  5666677776688999998875

>KOG0609|consensus

Probab=97.45  E-value=0.00034  Score=79.57  Aligned_cols=84  Identities=26%  Similarity=0.441  Sum_probs=74.8

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      ..+.+.+.|.....+|..++....  ..++|.+|..|+.|++.|.|++||.|++|||++|.+....++..+++...+.++
T Consensus       122 ~vriv~i~k~~~eplG~Tik~~e~--~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~it  199 (542)
T KOG0609|consen  122 AVRIVRIVKNTGEPLGATIRVEED--TKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSIT  199 (542)
T ss_pred             eeEEEEEeecCCCccceEEEeccC--CccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEE
Confidence            478888999888999999986422  279999999999999999999999999999999999999999999999889999


Q ss_pred             EEEEEe
Q psy4897         254 LEVKYL  259 (774)
Q Consensus       254 L~V~R~  259 (774)
                      +.|...
T Consensus       200 fkiiP~  205 (542)
T KOG0609|consen  200 FKIIPS  205 (542)
T ss_pred             EEEccc
Confidence            988654

>PRK11186 carboxy-terminal protease; Provisional

Probab=97.36  E-value=0.00034  Score=83.44  Aligned_cols=71  Identities=27%  Similarity=0.367  Sum_probs=57.7

Q ss_pred             CCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECC-----eecCCCCHHHHHHHHHH-cCcceEEEEEEe
Q psy4897         186 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNG-----EDLREATHDEAVKALKR-AGKLVELEVKYL  259 (774)
Q Consensus       186 ~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG-----~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~  259 (774)
                      .++|+.+...   ...++|..|.||+||+++++|++||+|++||+     .++.+++.++++.+|+. .|..|.|+|.|.
T Consensus       244 ~GIGa~l~~~---~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~  320 (667)
T PRK11186        244 EGIGAVLQMD---DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA  320 (667)
T ss_pred             eEEEEEEEEe---CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence            4567766542   23589999999999999845999999999994     35667888999999997 788999999873

>KOG3605|consensus

Probab=97.27  E-value=0.00023  Score=81.88  Aligned_cols=79  Identities=22%  Similarity=0.402  Sum_probs=64.6

Q ss_pred             ccCCCCcEEEEEEeecC-CcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          15 FFSSRDFYSENYKYTEN-NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        15 ~~~s~~~~~V~l~rk~~-~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      .+.+-.+.+|.|.|.+- .-|||++..|       +|-++..|+.|+| |++++|-+|++|||++|....|+..|++|..
T Consensus       731 iV~cpPV~~V~I~RPd~kyQLGFSVQNG-------iICSLlRGGIAER-GGVRVGHRIIEINgQSVVA~pHekIV~lLs~  802 (829)
T KOG3605|consen  731 IVSCPPVTTVLIRRPDLRYQLGFSVQNG-------IICSLLRGGIAER-GGVRVGHRIIEINGQSVVATPHEKIVQLLSN  802 (829)
T ss_pred             EecCCCceEEEeecccchhhccceeeCc-------Eeehhhcccchhc-cCceeeeeEEEECCceEEeccHHHHHHHHHH
Confidence            34566777788876654 6899999755       4778999999999 5599999999999999999999999999998


Q ss_pred             cCceEEEE
Q psy4897          94 AGKVVELE  101 (774)
Q Consensus        94 ag~~V~L~  101 (774)
                      +-..+.+.
T Consensus       803 aVGEIhMK  810 (829)
T KOG3605|consen  803 AVGEIHMK  810 (829)
T ss_pred             hhhhhhhh
Confidence            74444433

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=97.27  E-value=0.00059  Score=76.05  Aligned_cols=59  Identities=22%  Similarity=0.287  Sum_probs=52.7

Q ss_pred             CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEecc
Q psy4897         200 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLRE  261 (774)
Q Consensus       200 ~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~  261 (774)
                      .+++|..|.+++||+++| |++||+|++|||+++.+  .+++.+.++.  .++.+.|+|.|.++
T Consensus       278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~g~  338 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIG--AEELMDRIAETRPGSKVMVTVLRQGK  338 (351)
T ss_pred             ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            579999999999999998 99999999999999987  7888888875  67889999988764

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10898 serine endoprotease; Provisional

Probab=97.21  E-value=0.00079  Score=75.10  Aligned_cols=59  Identities=19%  Similarity=0.239  Sum_probs=51.7

Q ss_pred             CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEecc
Q psy4897         200 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLRE  261 (774)
Q Consensus       200 ~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~  261 (774)
                      .+++|..|.+++||+++| |++||+|++|||++|.+  ..++.+.+..  .++.+.|+|.|.++
T Consensus       279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~~l~~~l~~~~~g~~v~l~v~R~g~  339 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDDK  339 (353)
T ss_pred             CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            689999999999999998 99999999999999987  6777777764  67889999998654

>KOG4407|consensus

Probab=97.17  E-value=0.00044  Score=84.23  Aligned_cols=139  Identities=17%  Similarity=0.174  Sum_probs=105.7

Q ss_pred             cccccCCCCcEEEEEEeecCCcccEEEEc--------------------cCCC-----CCCeEEEEecCCCHHhhhCCCC
Q psy4897          12 EAFFFSSRDFYSENYKYTENNGLGISIKG--------------------GKEN-----KMPILISKIFKGMAADQTEQLY   66 (774)
Q Consensus        12 ~~~~~~s~~~~~V~l~rk~~~gLGfsI~G--------------------G~e~-----~~gi~Vs~V~pGSpAaraG~Lq   66 (774)
                      .+..+.+....-+.+.|+++.||||+++-                    |...     ...+++.++..++|+..+| +.
T Consensus        37 a~~~a~S~~~~~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~  115 (1973)
T KOG4407|consen   37 AALAASSIQPKLIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SS  115 (1973)
T ss_pred             hhhhhccCCCceEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-cc
Confidence            34455677777778889999999999872                    2211     1357888888999999987 99


Q ss_pred             CCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecccccceeeeeeccceeeeeeecccccccccccCCCCCcccc
Q psy4897          67 VGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVL  146 (774)
Q Consensus        67 vGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~  146 (774)
                      .||.|..|||..+.+.+. .....                                                        
T Consensus       116 s~~~v~~itG~e~~~~TS-~~~~~--------------------------------------------------------  138 (1973)
T KOG4407|consen  116 SSVGVAGITGLEPTSPTS-LPPYQ--------------------------------------------------------  138 (1973)
T ss_pred             cccceeeecccccCCCcc-ccHHH--------------------------------------------------------
Confidence            999999999988765421 00000                                                        


Q ss_pred             cCcCCCCCCCCCCcCCCCCCCCCccccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEE
Q psy4897         147 NGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAIL  226 (774)
Q Consensus       147 ~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~Il  226 (774)
                                                        .+.               ...+||..|.++++|..+- |+.||+|+
T Consensus       139 ----------------------------------vk~---------------~eT~~~~eV~~n~~~~~a~-LQ~~~~V~  168 (1973)
T KOG4407|consen  139 ----------------------------------VKA---------------METIFIKEVQANGPAHYAN-LQTGDRVL  168 (1973)
T ss_pred             ----------------------------------Hhh---------------hhhhhhhhhccCChhHHHh-hhccceeE
Confidence                                              000               1236788899999999985 99999999


Q ss_pred             EECCeecCCCCHHHHHHHHHHcCcceEEEEEE
Q psy4897         227 SVNGEDLREATHDEAVKALKRAGKLVELEVKY  258 (774)
Q Consensus       227 aVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R  258 (774)
                      .||.+++..+...+++..+++....++|.|..
T Consensus       169 ~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P  200 (1973)
T KOG4407|consen  169 MVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVP  200 (1973)
T ss_pred             EeecCcccchhhhhhhhhhccCCCCCCceecc
Confidence            99999999999999999999977777777653

>KOG3834|consensus

Probab=96.92  E-value=0.013  Score=65.44  Aligned_cols=143  Identities=22%  Similarity=0.197  Sum_probs=96.4

Q ss_pred             CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecccccceeeeeeccceeeeee
Q psy4897          46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFV  125 (774)
Q Consensus        46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~~~  125 (774)
                      .|.-|-+|.++|+|.++|-.---|-|++|||..+..- .+.....|+..-+.|+|+|....                   
T Consensus        15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~d-nd~Lk~llk~~sekVkltv~n~k-------------------   74 (462)
T KOG3834|consen   15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKD-NDTLKALLKANSEKVKLTVYNSK-------------------   74 (462)
T ss_pred             eeEEEEEeecCChHHhcCcchhhhhhheeCcccccCc-hHHHHHHHHhcccceEEEEEecc-------------------
Confidence            4677889999999999985555699999999999754 33344455555556888885321                   


Q ss_pred             ecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEEEEeccCCCC---cceEEeCCCC---CC
Q psy4897         126 SLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNG---LGISIKGGKE---NK  199 (774)
Q Consensus       126 tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L~k~~~~~---LGfsi~gg~~---~~  199 (774)
                                                                    ....|.+.+.+....+   ||++++=-..   ..
T Consensus        75 ----------------------------------------------t~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~  108 (462)
T KOG3834|consen   75 ----------------------------------------------TQEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVE  108 (462)
T ss_pred             ----------------------------------------------cceeEEEEecccccccccccceEEEeccCccchh
Confidence                                                          0124555555544444   7777653111   01


Q ss_pred             CCeEEEEecCCChhhhccCCC-CCCEEEEE-CCeecCCCCHHHHHHHHHH-cCcceEEEEEE
Q psy4897         200 MPILISKIFKGMAADQTEQLY-VGDAILSV-NGEDLREATHDEAVKALKR-AGKLVELEVKY  258 (774)
Q Consensus       200 ~pi~Is~V~pgspA~~aG~L~-~GD~IlaV-NG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R  258 (774)
                      .---|-+|.+++||+.+| |+ -+|-|+-+ |.+-- .  .+++..+|.. .++.+.|.|..
T Consensus       109 ~vwHvl~V~p~SPaalAg-l~~~~DYivG~~~~~~~-~--~eDl~~lIeshe~kpLklyVYN  166 (462)
T KOG3834|consen  109 SVWHVLSVEPNSPAALAG-LRPYTDYIVGIWDAVMH-E--EEDLFTLIESHEGKPLKLYVYN  166 (462)
T ss_pred             heeeeeecCCCCHHHhcc-cccccceEecchhhhcc-c--hHHHHHHHHhccCCCcceeEee
Confidence            112377889999999998 77 67999988 44433 2  5788888876 67888887754

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=96.90  E-value=0.0047  Score=58.46  Aligned_cols=81  Identities=15%  Similarity=0.221  Sum_probs=56.8

Q ss_pred             CCCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeE-eeeccC-----------C-CCCcEEEEEEeCCCCce
Q psy4897         456 DSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVST-RLVSSS-----------R-HSDVIVFSVRCGTPQGV  522 (774)
Q Consensus       456 ~~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~-r~~~~s-----------~-~~~~~~f~~~~~t~~g~  522 (774)
                      ....+|+++|++|+++.|..|++|..     ..|...+-|-.- .+....           . ....+.|.|.+++    
T Consensus        28 ~~~~~w~kRWFvlr~s~L~Y~~~~~~-----~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~----   98 (121)
T cd01254          28 RMCDRWQKRWFIVKESFLAYMDDPSS-----AQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSN----   98 (121)
T ss_pred             ccccCCcceeEEEeCCEEEEEcCCCC-----CceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCC----
Confidence            35679999999999999999998774     344433322110 000000           1 1223899999986    


Q ss_pred             eeEEEEecChhHHHHHHHHHHHH
Q psy4897         523 ATHHLRAETHRDLANWARTLVQA  545 (774)
Q Consensus       523 ~~~~~~~et~~dl~~w~~~l~~~  545 (774)
                      +++.|+++|.+++..|..+|..|
T Consensus        99 R~~~l~a~s~~~~~~Wi~~i~~a  121 (121)
T cd01254          99 RSLKLKCKSSRKLKQWMASIEDA  121 (121)
T ss_pred             cEEEEEeCCHHHHHHHHHHHHhC
Confidence            58999999999999999999764

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=96.90  E-value=0.0032  Score=70.81  Aligned_cols=69  Identities=20%  Similarity=0.464  Sum_probs=51.9

Q ss_pred             cCCcccEEEEccCCCCCCeEEEEec--------CCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc-CceEEE
Q psy4897          30 ENNGLGISIKGGKENKMPILISKIF--------KGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA-GKVVEL  100 (774)
Q Consensus        30 ~~~gLGfsI~GG~e~~~gi~Vs~V~--------pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a-g~~V~L  100 (774)
                      .+.++|+.+.     ..|++|....        .++||+++| |++||+|++|||++|.++  .+...+++.. ++.+.|
T Consensus        94 gG~~iGI~l~-----t~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~V~L  165 (402)
T TIGR02860        94 GGQSIGVKLN-----TKGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKNM--DDLANLINKAGGEKLTL  165 (402)
T ss_pred             CCEEEEEEEe-----cCEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCeEEE
Confidence            4556666664     3577775442        368999987 999999999999999977  4455666654 678999


Q ss_pred             Eeeecc
Q psy4897         101 EVGVGY  106 (774)
Q Consensus       101 ~V~R~~  106 (774)
                      +|.|+.
T Consensus       166 tV~R~G  171 (402)
T TIGR02860       166 TIERGG  171 (402)
T ss_pred             EEEECC
Confidence            998865

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>KOG1421|consensus

Probab=96.88  E-value=0.015  Score=67.91  Aligned_cols=143  Identities=22%  Similarity=0.247  Sum_probs=90.5

Q ss_pred             CeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-cCceEEEEeeecccccceeeeeeccceeeeee
Q psy4897          47 PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKVVELEVGVGYGRCGTLETYVRGQWYKVFV  125 (774)
Q Consensus        47 gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~-ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~~~  125 (774)
                      -++|..|.++|||++  .|++||.+++||+.-+.+.  .++.++|-. .|+.+.|+|.|.+.   .+++.+.        
T Consensus       304 mLvV~~vL~~gpa~k--~Le~GDillavN~t~l~df--~~l~~iLDegvgk~l~LtI~Rggq---elel~vt--------  368 (955)
T KOG1421|consen  304 MLVVETVLPEGPAEK--KLEPGDILLAVNSTCLNDF--EALEQILDEGVGKNLELTIQRGGQ---ELELTVT--------  368 (955)
T ss_pred             eEEEEEeccCCchhh--ccCCCcEEEEEcceehHHH--HHHHHHHhhccCceEEEEEEeCCE---EEEEEEE--------
Confidence            478899999999998  4999999999998888754  555555544 68999999999763   1222111        


Q ss_pred             ecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEEEE--------eccCCCCcceEEeCCCC
Q psy4897         126 SLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRV--------KKSENNGLGISIKGGKE  197 (774)
Q Consensus       126 tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L--------~k~~~~~LGfsi~gg~~  197 (774)
                                .++....     +                         ..|.+++        ..+ ...+++-.     
T Consensus       369 ----------vqdlh~i-----t-------------------------p~R~levcGav~hdlsyq-~ar~y~lP-----  402 (955)
T KOG1421|consen  369 ----------VQDLHGI-----T-------------------------PDRFLEVCGAVFHDLSYQ-LARLYALP-----  402 (955)
T ss_pred             ----------eccccCC-----C-------------------------CceEEEEcceEecCCCHH-HHhhcccc-----
Confidence                      0000000     0                         0111111        001 11122111     


Q ss_pred             CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEE
Q psy4897         198 NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEV  256 (774)
Q Consensus       198 ~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V  256 (774)
                       -.|+||++=. |+++.+.+ ++ |-.|.+||++++.+  .+.++..++.  .+..|.+..
T Consensus       403 -~~GvyVa~~~-gsf~~~~~-~y-~~ii~~vanK~tPd--LdaFidvlk~L~dg~rV~vry  457 (955)
T KOG1421|consen  403 -VEGVYVASPG-GSFRHRGP-RY-GQIIDSVANKPTPD--LDAFIDVLKELPDGARVPVRY  457 (955)
T ss_pred             -cCcEEEccCC-CCccccCC-cc-eEEEEeecCCcCCC--HHHHHHHHHhccCCCeeeEEE
Confidence             1267888866 77887655 66 89999999999988  7888888887  344555443

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=96.81  E-value=0.0023  Score=73.00  Aligned_cols=73  Identities=19%  Similarity=0.224  Sum_probs=53.7

Q ss_pred             EEEEEEeecCC--cccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897          22 YSENYKYTENN--GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE   99 (774)
Q Consensus        22 ~~V~l~rk~~~--gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~   99 (774)
                      +-.++..++..  .||+.+..   ++....|..|.++|||++|| |.+||.|++|||.+-.-.        -.++++.+.
T Consensus       439 ~gL~~~~~~~~~~~LGl~v~~---~~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s~~l~--------~~~~~d~i~  506 (558)
T COG3975         439 FGLTFTPKPREAYYLGLKVKS---EGGHEKITFVFPGGPAYKAG-LSPGDKIVAINGISDQLD--------RYKVNDKIQ  506 (558)
T ss_pred             cceEEEecCCCCcccceEecc---cCCeeEEEecCCCChhHhcc-CCCccEEEEEcCcccccc--------ccccccceE
Confidence            45566555554  88888762   34578999999999999998 999999999999922111        124667788


Q ss_pred             EEeeecc
Q psy4897         100 LEVGVGY  106 (774)
Q Consensus       100 L~V~R~~  106 (774)
                      +++.+.+
T Consensus       507 v~~~~~~  513 (558)
T COG3975         507 VHVFREG  513 (558)
T ss_pred             EEEccCC
Confidence            8887654

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=96.78  E-value=0.005  Score=59.69  Aligned_cols=83  Identities=19%  Similarity=0.205  Sum_probs=55.9

Q ss_pred             ceEEEEEeccC----CCCcceEEeCCCC---CCCCeEEEEecCCChhhhccCCCC-CCEEEEECCeecCCCCHHHHHHHH
Q psy4897         174 QKRIIRVKKSE----NNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYV-GDAILSVNGEDLREATHDEAVKAL  245 (774)
Q Consensus       174 ~~r~V~L~k~~----~~~LGfsi~gg~~---~~~pi~Is~V~pgspA~~aG~L~~-GD~IlaVNG~~V~~~t~~e~v~~L  245 (774)
                      ..|.+.+.+..    .+.+|++++-...   .....-|-+|.|+|||+++| |++ .|-|+.+++..+.+  .+++.+.+
T Consensus        10 ~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~--~~~l~~~v   86 (138)
T PF04495_consen   10 TTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDD--EDDLFELV   86 (138)
T ss_dssp             SEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--S--TCHHHHHH
T ss_pred             eEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCC--HHHHHHHH
Confidence            46777776532    4678999864322   24567899999999999998 998 69999999988886  57888888


Q ss_pred             HH-cCcceEEEEEEe
Q psy4897         246 KR-AGKLVELEVKYL  259 (774)
Q Consensus       246 k~-~g~~V~L~V~R~  259 (774)
                      ++ .++++.|.|-..
T Consensus        87 ~~~~~~~l~L~Vyns  101 (138)
T PF04495_consen   87 EANENKPLQLYVYNS  101 (138)
T ss_dssp             HHTTTS-EEEEEEET
T ss_pred             HHcCCCcEEEEEEEC
Confidence            87 678888888643

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>KOG0606|consensus

Probab=96.77  E-value=0.0025  Score=77.90  Aligned_cols=82  Identities=23%  Similarity=0.332  Sum_probs=67.6

Q ss_pred             cEEEEEEeecCCcccEEEE------ccCC-CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          21 FYSENYKYTENNGLGISIK------GGKE-NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        21 ~~~V~l~rk~~~gLGfsI~------GG~e-~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      +..-..+...+.+|||++.      |+.+ ...-..|..|.+|+||..+| |+.||.|+.|||+.|.+..|.+++.+|-+
T Consensus       626 ~~ppI~i~~~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~  704 (1205)
T KOG0606|consen  626 LRPPITIHFSGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLK  704 (1205)
T ss_pred             cCCceeeeccccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHh
Confidence            3333445778899998876      3333 12347889999999999987 99999999999999999999999999999


Q ss_pred             cCceEEEEee
Q psy4897          94 AGKVVELEVG  103 (774)
Q Consensus        94 ag~~V~L~V~  103 (774)
                      .|..|.+.+.
T Consensus       705 ~gn~v~~~tt  714 (1205)
T KOG0606|consen  705 SGNKVTLRTT  714 (1205)
T ss_pred             cCCeeEEEee
Confidence            9999888874

>KOG1320|consensus

Probab=96.72  E-value=0.0044  Score=70.78  Aligned_cols=57  Identities=18%  Similarity=0.295  Sum_probs=47.3

Q ss_pred             CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcC--cceEEEEEEe
Q psy4897         200 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG--KLVELEVKYL  259 (774)
Q Consensus       200 ~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g--~~V~L~V~R~  259 (774)
                      ++++|++|.+++++...+ +++||+|++|||++|.+  ..++..+|+...  +.|.++.++.
T Consensus       398 q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n--~~~l~~~i~~~~~~~~v~vl~~~~  456 (473)
T KOG1320|consen  398 QLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKN--LKHLYELIEECSTEDKVAVLDRRS  456 (473)
T ss_pred             eEEEEEEeccCCCccccc-ccCCCEEEEECCEEeec--hHHHHHHHHhcCcCceEEEEEecC
Confidence            468999999999999886 99999999999999999  678888888743  4555555543

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.69  E-value=0.0043  Score=68.85  Aligned_cols=62  Identities=24%  Similarity=0.290  Sum_probs=53.4

Q ss_pred             CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          44 NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        44 ~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      ...|++|..|.+++||+++| ++.||.|+++||+++.+.............++.+.+.+.|++
T Consensus       268 ~~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g  329 (347)
T COG0265         268 VAAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRGG  329 (347)
T ss_pred             CCCceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEECC
Confidence            34579999999999999998 999999999999999988666655555567889999999874

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=96.66  E-value=0.0088  Score=53.60  Aligned_cols=60  Identities=27%  Similarity=0.287  Sum_probs=40.5

Q ss_pred             CCeEEEEecCC--------CHHhhhCC-CCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          46 MPILISKIFKG--------MAADQTEQ-LYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        46 ~gi~Vs~V~pG--------SpAaraG~-LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      .+..|.+|.+|        ||-.+.|- +++||.|++|||++|..-. .-...+..++++.|.|+|.+..
T Consensus        12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~-~~~~lL~~~agk~V~Ltv~~~~   80 (88)
T PF14685_consen   12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADA-NPYRLLEGKAGKQVLLTVNRKP   80 (88)
T ss_dssp             TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB--HHHHHHTTTTSEEEEEEE-ST
T ss_pred             CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCC-CHHHHhcccCCCEEEEEEecCC
Confidence            56889999987        77777762 5699999999999998642 2334455578999999998754

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=96.56  E-value=0.0034  Score=71.13  Aligned_cols=52  Identities=29%  Similarity=0.305  Sum_probs=43.0

Q ss_pred             EEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEE-Eec
Q psy4897         204 ISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK-YLR  260 (774)
Q Consensus       204 Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~-R~~  260 (774)
                      |..|.|+|+|+++| |++||+|++|||+++.+  +.++...+.  +..+.|+|. |.+
T Consensus         2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~D--w~D~~~~l~--~e~l~L~V~~rdG   54 (433)
T TIGR03279         2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRD--LIDYQFLCA--DEELELEVLDANG   54 (433)
T ss_pred             cCCcCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHhc--CCcEEEEEEcCCC
Confidence            67899999999998 99999999999999987  677766663  467888886 443

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=96.52  E-value=0.009  Score=67.30  Aligned_cols=69  Identities=17%  Similarity=0.426  Sum_probs=54.3

Q ss_pred             CCCcceEEeCCCCCCCCeEEEEec--------CCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEE
Q psy4897         185 NNGLGISIKGGKENKMPILISKIF--------KGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELE  255 (774)
Q Consensus       185 ~~~LGfsi~gg~~~~~pi~Is~V~--------pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~  255 (774)
                      ...+|+.+..     .|++|....        .++||+++| |++||.|++|||+++.+  .+++.+++++ .++.+.|+
T Consensus        95 G~~iGI~l~t-----~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s--~~DL~~iL~~~~g~~V~Lt  166 (402)
T TIGR02860        95 GQSIGVKLNT-----KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKN--MDDLANLINKAGGEKLTLT  166 (402)
T ss_pred             CEEEEEEEec-----CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCeEEEE
Confidence            4556776643     467765542        258999997 99999999999999987  7899999887 56789999


Q ss_pred             EEEecc
Q psy4897         256 VKYLRE  261 (774)
Q Consensus       256 V~R~~~  261 (774)
                      |.|..+
T Consensus       167 V~R~Ge  172 (402)
T TIGR02860       167 IERGGK  172 (402)
T ss_pred             EEECCE
Confidence            988765

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>KOG3129|consensus

Probab=96.46  E-value=0.0062  Score=62.02  Aligned_cols=59  Identities=20%  Similarity=0.251  Sum_probs=45.2

Q ss_pred             eEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHH--hcCceEEEEeeeccc
Q psy4897          48 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK--RAGKVVELEVGVGYG  107 (774)
Q Consensus        48 i~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk--~ag~~V~L~V~R~~~  107 (774)
                      ++|..|.|+|||+++| |++||.|+.+..+.--+....+-+..+.  .-+..+.++|.|.+.
T Consensus       141 a~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~  201 (231)
T KOG3129|consen  141 AVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQ  201 (231)
T ss_pred             EEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCC
Confidence            7899999999999987 9999999999876666555333333333  346778899988763

>KOG0930|consensus

Probab=96.41  E-value=0.013  Score=61.88  Aligned_cols=84  Identities=17%  Similarity=0.294  Sum_probs=57.0

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCc--------------e-
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQG--------------V-  522 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g--------------~-  522 (774)
                      -.+|+++|++||+.|||.|+-....-     |-..-||...-+.+...+....||.+-.++..|              | 
T Consensus       274 vktWKrRWFiLtdNCLYYFe~tTDKE-----PrGIIpLeNlsir~VedP~kP~cfEly~ps~~gq~IKACKTe~DGRvVE  348 (395)
T KOG0930|consen  274 VKTWKRRWFILTDNCLYYFEYTTDKE-----PRGIIPLENLSIREVEDPKKPNCFELYIPSNKGQVIKACKTEADGRVVE  348 (395)
T ss_pred             ccchhheeEEeecceeeeeeeccCCC-----CCcceeccccceeeccCCCCCCeEEEecCCCCcCeeeeecccCCceeEe
Confidence            46899999999999999999877543     444444443222222233344777765544422              2 


Q ss_pred             ---eeEEEEecChhHHHHHHHHHHHHH
Q psy4897         523 ---ATHHLRAETHRDLANWARTLVQAT  546 (774)
Q Consensus       523 ---~~~~~~~et~~dl~~w~~~l~~~~  546 (774)
                         ..+-.++-|..|+-.|.++|..++
T Consensus       349 G~H~vYrIsA~~~Ee~~~Wi~sI~a~i  375 (395)
T KOG0930|consen  349 GNHSVYRISAPTPEEKDEWIKSIKAAI  375 (395)
T ss_pred             ccceEEEeeCCCHHHHHHHHHHHHHHh
Confidence               256678899999999999998775

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=96.33  E-value=0.01  Score=53.11  Aligned_cols=60  Identities=28%  Similarity=0.375  Sum_probs=40.7

Q ss_pred             CCeEEEEecCC--------Chhhhcc-CCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEEEEecc
Q psy4897         200 MPILISKIFKG--------MAADQTE-QLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELEVKYLRE  261 (774)
Q Consensus       200 ~pi~Is~V~pg--------spA~~aG-~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~~~  261 (774)
                      ....|.+|.++        ||..+.| .+++||.|++|||+++..  -.+...+|.. +++.|.|+|.+...
T Consensus        12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~--~~~~~~lL~~~agk~V~Ltv~~~~~   81 (88)
T PF14685_consen   12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTA--DANPYRLLEGKAGKQVLLTVNRKPG   81 (88)
T ss_dssp             TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BT--TB-HHHHHHTTTTSEEEEEEE-STT
T ss_pred             CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCC--CCCHHHHhcccCCCEEEEEEecCCC
Confidence            34678888886        6666665 367999999999999987  4567777776 88999999987653

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=96.32  E-value=0.032  Score=51.04  Aligned_cols=82  Identities=17%  Similarity=0.141  Sum_probs=56.0

Q ss_pred             ceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCC-CCcEEEEEEeCCCCceeeEEEEecChhHHHHH
Q psy4897         460 RWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRH-SDVIVFSVRCGTPQGVATHHLRAETHRDLANW  538 (774)
Q Consensus       460 ~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~-~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~w  538 (774)
                      .|.++|+...|-  ++|-.+-.+...-.++-...||....|...... ...+||.|.+..    +++.+.+.|..|...|
T Consensus        16 ~~~R~~FLFnD~--LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~~~~~~~~F~I~~~~----ks~~l~A~s~~Ek~~W   89 (99)
T cd01220          16 LQQRMFFLFSDL--LLYTSKSPTDQNSFRILGHLPLRGMLTEESEHEWGVPHCFTIFGGQ----CAITVAASTRAEKEKW   89 (99)
T ss_pred             CceEEEEEccce--EEEEEeecCCCceEEEEEEEEcCceEEeeccCCcCCceeEEEEcCC----eEEEEECCCHHHHHHH
Confidence            467888888874  444433222222335667777777765433221 224999998653    6899999999999999


Q ss_pred             HHHHHHHHH
Q psy4897         539 ARTLVQATH  547 (774)
Q Consensus       539 ~~~l~~~~~  547 (774)
                      ..+|.+|+.
T Consensus        90 i~~i~~aI~   98 (99)
T cd01220          90 LADLSKAIA   98 (99)
T ss_pred             HHHHHHHhh
Confidence            999998873

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF15409 PH_8: Pleckstrin homology domain

Probab=96.21  E-value=0.031  Score=50.21  Aligned_cols=77  Identities=17%  Similarity=0.312  Sum_probs=55.5

Q ss_pred             CCCceEEEEEEe--ccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhH
Q psy4897         457 STDRWVSIFGAV--TERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRD  534 (774)
Q Consensus       457 ~~~~w~~~~~~l--~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~d  534 (774)
                      .-|.|.++|++|  ++..|-.|-+++..+--++.|+..-      ++  |...+...|.|.+|.    +.+++.+.+..|
T Consensus        10 ~lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a------~i--s~~~~~~~I~idsg~----~i~hLKa~s~~~   77 (89)
T PF15409_consen   10 PLQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLA------VI--SANKKSRRIDIDSGD----EIWHLKAKSQED   77 (89)
T ss_pred             cCCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccce------EE--EecCCCCEEEEEcCC----eEEEEEcCCHHH
Confidence            468899999999  9999999998875422222222111      22  222344789998874    689999999999


Q ss_pred             HHHHHHHHHHH
Q psy4897         535 LANWARTLVQA  545 (774)
Q Consensus       535 l~~w~~~l~~~  545 (774)
                      ...|+.+|..|
T Consensus        78 f~~Wv~aL~~a   88 (89)
T PF15409_consen   78 FQRWVSALQKA   88 (89)
T ss_pred             HHHHHHHHHhc
Confidence            99999999764

>KOG1738|consensus

Probab=96.15  E-value=0.0064  Score=70.58  Aligned_cols=75  Identities=25%  Similarity=0.409  Sum_probs=67.2

Q ss_pred             ecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeec
Q psy4897          29 TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVG  105 (774)
Q Consensus        29 k~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~  105 (774)
                      +++.|+|+-|..-.++  .++|+++.+++||+..+.|..||.|++||+.-|.+|.+..+|..|+....-|.++|...
T Consensus       210 kp~eglg~~I~Ssydg--~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKr  284 (638)
T KOG1738|consen  210 SPSEGLGLYIDSSYDG--PHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKR  284 (638)
T ss_pred             CcccCCceEEeeecCC--ceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeecc
Confidence            7889999999876654  69999999999999999999999999999999999999999999998877777777544

>KOG0690|consensus

Probab=96.12  E-value=0.0093  Score=64.69  Aligned_cols=88  Identities=15%  Similarity=0.262  Sum_probs=67.7

Q ss_pred             CCceEEEEEEec-cceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897         458 TDRWVSIFGAVT-ERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLA  536 (774)
Q Consensus       458 ~~~w~~~~~~l~-~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~  536 (774)
                      -..|+|+|++|+ |..|+=|.+-|-...----|+..|.+-.+-+++. +......|-|||-.=..|--..|.||+..+..
T Consensus        28 IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~-erPrPntFiiRcLQWTTVIERTF~ves~~eRq  106 (516)
T KOG0690|consen   28 IKNWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQTMKT-ERPRPNTFIIRCLQWTTVIERTFYVESAEERQ  106 (516)
T ss_pred             hhcccceEEEEeeCCceEeeccCCccCCCCcccccchhhhhhhhhhc-cCCCCceEEEEeeeeeeeeeeeeecCCHHHHH
Confidence            478999888875 6778889999988777777888887666555543 22223789999875556777899999999999


Q ss_pred             HHHHHHHHHH
Q psy4897         537 NWARTLVQAT  546 (774)
Q Consensus       537 ~w~~~l~~~~  546 (774)
                      .|+.||+.-.
T Consensus       107 ~W~~AIq~vs  116 (516)
T KOG0690|consen  107 EWIEAIQAVS  116 (516)
T ss_pred             HHHHHHHHHh
Confidence            9999987655

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=96.04  E-value=0.013  Score=63.23  Aligned_cols=68  Identities=15%  Similarity=0.202  Sum_probs=54.2

Q ss_pred             CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecccccceeeee
Q psy4897          46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETY  115 (774)
Q Consensus        46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~~ks~~~~~~  115 (774)
                      .|+|+..|..++||.  |.|+.||.|++|||+++.+.........-++.|+.|++.+.|...+....+..
T Consensus       130 ~gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~s~~e~i~~v~~~k~Gd~VtI~~~r~~~~~~~~~~t  197 (342)
T COG3480         130 AGVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFTSSDELIDYVSSKKPGDEVTIDYERHNETPEIVTIT  197 (342)
T ss_pred             eeEEEEEccCCcchh--ceeccCCeEEeeCCeecCCHHHHHHHHhccCCCCeEEEEEEeccCCCceEEEE
Confidence            479999999999998  57999999999999999987555555555578999999999865554444433

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain

Probab=96.04  E-value=0.034  Score=51.55  Aligned_cols=82  Identities=17%  Similarity=0.342  Sum_probs=57.5

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeec-----c-----CCCCCc-EEEEEEeCCCCceeeEE
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVS-----S-----SRHSDV-IVFSVRCGTPQGVATHH  526 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~-----~-----s~~~~~-~~f~~~~~t~~g~~~~~  526 (774)
                      .+.|+..|+||.+.-|+||+..+..  +-..|...+-+-.  ++|     +     ....|- +.|.|..... + .+.+
T Consensus        17 k~gW~r~yvVv~~~Kl~lYd~e~~~--~~~~p~~vldl~~--~fhv~~V~asDVi~a~~kDiP~IF~I~~~~~-~-~~ll   90 (112)
T cd01242          17 KPGWKKQYVVVSSRKILFYNDEQDK--ENSTPSMILDIDK--LFHVRPVTQGDVYRADAKEIPKIFQILYANE-A-RDLL   90 (112)
T ss_pred             cCCceEEEEEEeCCEEEEEecCccc--cCCCcEEEEEccc--eeeeecccHHHeeecCcccCCeEEEEEeCCc-c-ceEE
Confidence            3579999999999999999987643  1233555443322  333     1     122333 8899887532 3 7889


Q ss_pred             EEecChhHHHHHHHHHHHH
Q psy4897         527 LRAETHRDLANWARTLVQA  545 (774)
Q Consensus       527 ~~~et~~dl~~w~~~l~~~  545 (774)
                      +-+++..|-..|..+|+.-
T Consensus        91 lLA~s~~ek~kWV~~L~~~  109 (112)
T cd01242          91 LLAPQTDEQNKWVSRLVKK  109 (112)
T ss_pred             EEeCCchHHHHHHHHHHHh
Confidence            9999999999999999864

Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3938|consensus

Probab=95.92  E-value=0.014  Score=61.40  Aligned_cols=83  Identities=30%  Similarity=0.469  Sum_probs=67.9

Q ss_pred             ccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cC
Q psy4897         172 ENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AG  249 (774)
Q Consensus       172 ~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g  249 (774)
                      ..+...+.+.|. ...||++|...  ...-.||.+|.+||.-++-..+.+||.|-+|||+++.++.|.|+.++||.  .+
T Consensus       124 kGq~kEv~v~Ks-edalGlTITDN--G~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rg  200 (334)
T KOG3938|consen  124 KGQAKEVEVVKS-EDALGLTITDN--GAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRG  200 (334)
T ss_pred             cCcceeEEEEec-ccccceEEeeC--CcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccC
Confidence            345677888885 67899999642  12347999999999999877799999999999999999999999999998  55


Q ss_pred             cceEEEEE
Q psy4897         250 KLVELEVK  257 (774)
Q Consensus       250 ~~V~L~V~  257 (774)
                      ++.+|.+.
T Consensus       201 e~ftlrLi  208 (334)
T KOG3938|consen  201 ETFTLRLI  208 (334)
T ss_pred             CeeEEEee
Confidence            66666554

>KOG1738|consensus

Probab=95.91  E-value=0.02  Score=66.61  Aligned_cols=78  Identities=26%  Similarity=0.365  Sum_probs=65.0

Q ss_pred             CCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecccc
Q psy4897         184 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT  263 (774)
Q Consensus       184 ~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~~~  263 (774)
                      ...++|+.|...  .+.+++|+.+.+++||+....+..||.|++||++.|.++.+..+|+.++....-|.++|+..+...
T Consensus       211 p~eglg~~I~Ss--ydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKrp~~~  288 (638)
T KOG1738|consen  211 PSEGLGLYIDSS--YDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKRPVTS  288 (638)
T ss_pred             cccCCceEEeee--cCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeeccCCCc
Confidence            467889888754  356789999999999999999999999999999999999999999999986666666666544433

>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain

Probab=95.89  E-value=0.057  Score=49.04  Aligned_cols=80  Identities=18%  Similarity=0.227  Sum_probs=58.2

Q ss_pred             EEEEEEeccceeEEecCCCCChhcccCcccccceeeE--eeeccCCCCCcEEEEEEeCCCCce----eeEEEEecChhHH
Q psy4897         462 VSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVST--RLVSSSRHSDVIVFSVRCGTPQGV----ATHHLRAETHRDL  535 (774)
Q Consensus       462 ~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~--r~~~~s~~~~~~~f~~~~~t~~g~----~~~~~~~et~~dl  535 (774)
                      +.+|+|||+.+||+|+.--..-     |--.-||...  |.|-+.-.+.++||++=.+..+-|    ++.-++++|..|+
T Consensus        20 K~~WFVLt~~~L~wykd~eeKE-----~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~v   94 (110)
T cd01256          20 KDYWFVLTSESLSWYKDDEEKE-----KKYMLPLDGLKLRDIEGGFMSRNHKFALFYPDGRNVYKDYKQLELGCETLEEV   94 (110)
T ss_pred             cceEEEEecceeeeeccccccc-----ccceeeccccEEEeecccccCCCcEEEEEcCcccccccchheeeecCCCHHHH
Confidence            7899999999999998876432     3334444443  444443345569999987665433    4667999999999


Q ss_pred             HHHHHHHHHHH
Q psy4897         536 ANWARTLVQAT  546 (774)
Q Consensus       536 ~~w~~~l~~~~  546 (774)
                      -.|..++.+|-
T Consensus        95 dswkasflrag  105 (110)
T cd01256          95 DSWKASFLRAG  105 (110)
T ss_pred             HHHHHHHHhcc
Confidence            99999999873

Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=95.64  E-value=0.032  Score=59.97  Aligned_cols=47  Identities=15%  Similarity=0.244  Sum_probs=35.7

Q ss_pred             HHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceEEEEeeeccc
Q psy4897          58 AADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVVELEVGVGYG  107 (774)
Q Consensus        58 pAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V~L~V~R~~~  107 (774)
                      .-.++| ||+||.+++|||.++.+..+  +.++++.  ....++|+|.|++.
T Consensus       219 lF~~~G-Lq~GDva~sING~dL~D~~q--a~~l~~~L~~~tei~ltVeRdGq  267 (276)
T PRK09681        219 LFDASG-FKEGDIAIALNQQDFTDPRA--MIALMRQLPSMDSIQLTVLRKGA  267 (276)
T ss_pred             HHHHcC-CCCCCEEEEeCCeeCCCHHH--HHHHHHHhccCCeEEEEEEECCE
Confidence            446676 99999999999999997754  3344332  34689999999874

>KOG3129|consensus

Probab=95.04  E-value=0.053  Score=55.43  Aligned_cols=59  Identities=19%  Similarity=0.286  Sum_probs=44.7

Q ss_pred             eEEEEecCCChhhhccCCCCCCEEEEECCeecCCCC-HHHHHHHHHH-cCcceEEEEEEecc
Q psy4897         202 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT-HDEAVKALKR-AGKLVELEVKYLRE  261 (774)
Q Consensus       202 i~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t-~~e~v~~Lk~-~g~~V~L~V~R~~~  261 (774)
                      .+|+.|.|+|||+.+| |+.||.|+.+..+.-.+.. ...+-...+. .++.+.++|.|.++
T Consensus       141 a~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~  201 (231)
T KOG3129|consen  141 AVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQ  201 (231)
T ss_pred             EEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCC
Confidence            5899999999999998 9999999999887766532 3333333333 67888888887654

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=95.01  E-value=0.051  Score=58.49  Aligned_cols=48  Identities=15%  Similarity=0.257  Sum_probs=40.0

Q ss_pred             hhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccccc
Q psy4897         214 DQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREVTP  264 (774)
Q Consensus       214 ~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~~~  264 (774)
                      .++| |++||.+++|||.++.+  .+++.+++++  ....++|+|.|+++...
T Consensus       221 ~~~G-Lq~GDva~sING~dL~D--~~qa~~l~~~L~~~tei~ltVeRdGq~~~  270 (276)
T PRK09681        221 DASG-FKEGDIAIALNQQDFTD--PRAMIALMRQLPSMDSIQLTVLRKGARHD  270 (276)
T ss_pred             HHcC-CCCCCEEEEeCCeeCCC--HHHHHHHHHHhccCCeEEEEEEECCEEEE
Confidence            4466 99999999999999988  7777777776  55789999999887543

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.88  E-value=0.07  Score=59.24  Aligned_cols=60  Identities=22%  Similarity=0.313  Sum_probs=52.0

Q ss_pred             CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEecc
Q psy4897         199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLRE  261 (774)
Q Consensus       199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~  261 (774)
                      ..|++|..|.+++||+++| ++.||.|+++||+++.+  ..+....+..  .+..+.+.+.|.++
T Consensus       269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~--~~~l~~~v~~~~~g~~v~~~~~r~g~  330 (347)
T COG0265         269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVAS--LSDLVAAVASNRPGDEVALKLLRGGK  330 (347)
T ss_pred             CCceEEEecCCCChHHHcC-CCCCCEEEEECCEEccC--HHHHHHHHhccCCCCEEEEEEEECCE
Confidence            4569999999999999998 99999999999999988  7787777765  57889999988743

>KOG0606|consensus

Probab=94.73  E-value=0.072  Score=65.70  Aligned_cols=79  Identities=25%  Similarity=0.400  Sum_probs=64.2

Q ss_pred             EEEeccCCCCcceEEe------CCCC-CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897         178 IRVKKSENNGLGISIK------GGKE-NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK  250 (774)
Q Consensus       178 V~L~k~~~~~LGfsi~------gg~~-~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~  250 (774)
                      +.+.. ...+|||.+.      |+.+ ..+-..|..|.+++||..+| |+.||.|..|||.+|.+..|.+++++|-+.+.
T Consensus       630 I~i~~-~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~gn  707 (1205)
T KOG0606|consen  630 ITIHF-SGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSGN  707 (1205)
T ss_pred             eeeec-cccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcCC
Confidence            44444 3678887764      2222 12457899999999999997 99999999999999999999999999999999


Q ss_pred             ceEEEEEE
Q psy4897         251 LVELEVKY  258 (774)
Q Consensus       251 ~V~L~V~R  258 (774)
                      .|.+.+..
T Consensus       708 ~v~~~ttp  715 (1205)
T KOG0606|consen  708 KVTLRTTP  715 (1205)
T ss_pred             eeEEEeec
Confidence            98887754

>KOG3532|consensus

Probab=94.73  E-value=0.084  Score=61.72  Aligned_cols=74  Identities=15%  Similarity=0.293  Sum_probs=58.0

Q ss_pred             EEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeee
Q psy4897          26 YKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGV  104 (774)
Q Consensus        26 l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R  104 (774)
                      +.+..+..+|+...-  .....+-|..|.+++||.++. |++||++++|||++|+.  ..++...++.....|...+.|
T Consensus       380 ~~~~~s~~ig~vf~~--~~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~s--~~q~~~~~~s~~~~~~~l~~~  453 (1051)
T KOG3532|consen  380 SRYDVSSPIGLVFDK--NTNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIRS--ERQATRFLQSTTGDLTVLVER  453 (1051)
T ss_pred             ccccccCceeEEEec--CCceEEEEEEecCCChhhHhc-CCCcceEEEecCccchh--HHHHHHHHHhcccceEEEEee
Confidence            345566777776652  234568899999999999996 99999999999999984  577888888876667666655

>KOG1421|consensus

Probab=94.72  E-value=0.067  Score=62.71  Aligned_cols=59  Identities=22%  Similarity=0.323  Sum_probs=51.0

Q ss_pred             CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEEEEeccc
Q psy4897         200 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELEVKYLREV  262 (774)
Q Consensus       200 ~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~~~~  262 (774)
                      .-++|..|.++++|++.  |++||.+++||+..+.+  ..++-++|-+ .|+.+.|+|.|.++.
T Consensus       303 gmLvV~~vL~~gpa~k~--Le~GDillavN~t~l~d--f~~l~~iLDegvgk~l~LtI~Rggqe  362 (955)
T KOG1421|consen  303 GMLVVETVLPEGPAEKK--LEPGDILLAVNSTCLND--FEALEQILDEGVGKNLELTIQRGGQE  362 (955)
T ss_pred             eeEEEEEeccCCchhhc--cCCCcEEEEEcceehHH--HHHHHHHHhhccCceEEEEEEeCCEE
Confidence            34689999999999985  99999999999998877  7777788866 889999999998763

>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain

Probab=94.70  E-value=0.2  Score=47.25  Aligned_cols=82  Identities=22%  Similarity=0.357  Sum_probs=53.1

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccce--------eeEeeecc-----CCCCCc-EEEEEEe----CCC
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPL--------VSTRLVSS-----SRHSDV-IVFSVRC----GTP  519 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l--------~~~r~~~~-----s~~~~~-~~f~~~~----~t~  519 (774)
                      .+.|+++|++|.+.-|+||+..+...   ..|.....+        +..|=|.+     ....|. +.|.|.+    +..
T Consensus        17 krGW~r~~vVv~~~Kl~lYd~e~~k~---~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If~I~~~~~~~~~   93 (122)
T cd01243          17 KKGWQRALVVVCDFKLFLYDIAEDRA---SQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIFRVTTSQISASS   93 (122)
T ss_pred             ccCceEEEEEEeCCEEEEEeCCcccc---CCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEEEEEEecccCCC
Confidence            45799999999999999999888431   123333222        12221111     122333 7787765    222


Q ss_pred             CceeeEEEEecChhHHHHHHHHHH
Q psy4897         520 QGVATHHLRAETHRDLANWARTLV  543 (774)
Q Consensus       520 ~g~~~~~~~~et~~dl~~w~~~l~  543 (774)
                      . ..+-||-+++..|...|..+|-
T Consensus        94 ~-~~~~~~lA~s~~eK~kWV~aL~  116 (122)
T cd01243          94 S-KCSTLMLADTEEEKSKWVGALS  116 (122)
T ss_pred             C-ccEEEEEeCCchHHHHHHHHHH
Confidence            2 2578899999999999999874

MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3532|consensus

Probab=94.69  E-value=0.093  Score=61.37  Aligned_cols=72  Identities=14%  Similarity=0.256  Sum_probs=56.5

Q ss_pred             ccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEE
Q psy4897         182 KSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKY  258 (774)
Q Consensus       182 k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R  258 (774)
                      +..+..+|+.+...  ....+.|..|.++++|.++. +++||++++|||++|..  ..++.+.++.....+..++.|
T Consensus       382 ~~~s~~ig~vf~~~--~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~s--~~q~~~~~~s~~~~~~~l~~~  453 (1051)
T KOG3532|consen  382 YDVSSPIGLVFDKN--TNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIRS--ERQATRFLQSTTGDLTVLVER  453 (1051)
T ss_pred             ccccCceeEEEecC--CceEEEEEEecCCChhhHhc-CCCcceEEEecCccchh--HHHHHHHHHhcccceEEEEee
Confidence            34466777766532  24567899999999999996 99999999999999987  889999999865555555544

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=94.69  E-value=0.069  Score=49.12  Aligned_cols=54  Identities=22%  Similarity=0.353  Sum_probs=40.8

Q ss_pred             CcccceeeEeeecccc-cC--CCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHh
Q psy4897         302 RYLPLQLCYLVRNYKH-YD--SENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTL  357 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~-~d--~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni  357 (774)
                      +.|++.-|.-.+.... .+  .++++|+|..++  ++++|.|+|.+++.+||++|+.++
T Consensus        45 g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~--rt~~l~A~se~e~e~WI~~i~~a~  101 (101)
T cd01264          45 CSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD--KTYILKAKDEKNAEEWLQCLNIAV  101 (101)
T ss_pred             ceEEcccceEEeeccccccccccCcEEEEEcCC--ceEEEEeCCHHHHHHHHHHHHhhC
Confidence            4566666666663221 11  246899998877  689999999999999999999875

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=94.37  E-value=0.099  Score=56.69  Aligned_cols=59  Identities=20%  Similarity=0.378  Sum_probs=51.4

Q ss_pred             CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccc
Q psy4897         200 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREV  262 (774)
Q Consensus       200 ~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~  262 (774)
                      .|+++..|..++++.  |.|+.||.|++|||+++.+  .+|+...++.  .|+.|++..+|..+.
T Consensus       130 ~gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k~Gd~VtI~~~r~~~~  190 (342)
T COG3480         130 AGVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFTS--SDELIDYVSSKKPGDEVTIDYERHNET  190 (342)
T ss_pred             eeEEEEEccCCcchh--ceeccCCeEEeeCCeecCC--HHHHHHHHhccCCCCeEEEEEEeccCC
Confidence            468999999999995  5699999999999999988  8999999986  899999999975443

>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain

Probab=94.20  E-value=0.19  Score=46.77  Aligned_cols=87  Identities=16%  Similarity=0.185  Sum_probs=57.2

Q ss_pred             CCCCceEEEEEEeccceeEEecCCCCChhcc-------cCcccccceeeEeeeccCCCCCcEEEEEEeCCCCce---eeE
Q psy4897         456 DSTDRWVSIFGAVTERELRLYESAPWSPEAW-------STPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGV---ATH  525 (774)
Q Consensus       456 ~~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~-------~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~---~~~  525 (774)
                      ++.+.|+++|++|+..-||.+.-- -+++.+       ......|..++-|-.+.+|.  .+||++++..-|..   .-.
T Consensus        11 ~gkKsWKk~~f~LR~SGLYy~~Kg-ksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPT--d~~F~~K~~~~q~~~s~~ik   87 (114)
T cd01259          11 DGKKSWKKYYFVLRSSGLYYFPKE-KTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPT--DYCFGFKAVGDQSKGSQSIK   87 (114)
T ss_pred             CCCccceEEEEEEeCCeeEEccCC-CcCCHHHHHHHHhcccCcEEEEechhhccCCCC--CceEEEeccccCcccchhhe
Confidence            478999999999999999876543 344433       12223333333232222221  29999998866554   256


Q ss_pred             EEEecChhHHHHHHHHHHHH
Q psy4897         526 HLRAETHRDLANWARTLVQA  545 (774)
Q Consensus       526 ~~~~et~~dl~~w~~~l~~~  545 (774)
                      +|++|+.+.+..|..+|--+
T Consensus        88 ~lCaeDe~t~~~W~ta~Ri~  107 (114)
T cd01259          88 YLCAEDLPTLDRWLTAIRIA  107 (114)
T ss_pred             eeccCCHHHHHHHHHHHHHH
Confidence            89999999999999877443

Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=94.07  E-value=0.051  Score=62.38  Aligned_cols=67  Identities=22%  Similarity=0.303  Sum_probs=48.4

Q ss_pred             CCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCe--ecCCCCHHHHHHHHHHcCcceEEEEEEeccc
Q psy4897         185 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGE--DLREATHDEAVKALKRAGKLVELEVKYLREV  262 (774)
Q Consensus       185 ~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~--~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~~  262 (774)
                      ...||+.+...   ....+|..|.++|||..+| |.+||.|++|||.  ...+.          +.+..+.+.+.+.+..
T Consensus       450 ~~~LGl~v~~~---~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s~~l~~~----------~~~d~i~v~~~~~~~L  515 (558)
T COG3975         450 AYYLGLKVKSE---GGHEKITFVFPGGPAYKAG-LSPGDKIVAINGISDQLDRY----------KVNDKIQVHVFREGRL  515 (558)
T ss_pred             CcccceEeccc---CCeeEEEecCCCChhHhcc-CCCccEEEEEcCcccccccc----------ccccceEEEEccCCce
Confidence            34677776542   4567999999999999998 9999999999999  22221          2456677777665555


Q ss_pred             ccc
Q psy4897         263 TPY  265 (774)
Q Consensus       263 ~~~  265 (774)
                      ..+
T Consensus       516 ~e~  518 (558)
T COG3975         516 REF  518 (558)
T ss_pred             EEe
Confidence            444

>KOG1320|consensus

Probab=93.82  E-value=0.096  Score=60.15  Aligned_cols=57  Identities=19%  Similarity=0.307  Sum_probs=45.4

Q ss_pred             CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcC--ceEEEEeeec
Q psy4897          46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG--KVVELEVGVG  105 (774)
Q Consensus        46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag--~~V~L~V~R~  105 (774)
                      ++++|++|.|++++...+ +++||+|++|||++|.++.|.  ..++..+-  +.|.+...|.
T Consensus       398 q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~~~l--~~~i~~~~~~~~v~vl~~~~  456 (473)
T KOG1320|consen  398 QLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNLKHL--YELIEECSTEDKVAVLDRRS  456 (473)
T ss_pred             eEEEEEEeccCCCccccc-ccCCCEEEEECCEEeechHHH--HHHHHhcCcCceEEEEEecC
Confidence            469999999999999876 999999999999999999664  45565553  4666555544

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=92.56  E-value=0.36  Score=50.49  Aligned_cols=72  Identities=21%  Similarity=0.266  Sum_probs=54.0

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcce
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLV  252 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V  252 (774)
                      .+...+.+ ..+-+|+.+..|++            ++.-+..| |+.||..++||+.++.+  .+++.++++.  .-..+
T Consensus       195 Irltpv~r-~eki~Gyr~~pgkd------------~slF~~sg-lq~GDIavaiNnldltd--p~~m~~llq~l~~m~s~  258 (275)
T COG3031         195 IRLTPVIR-NEKIEGYRFEPGKD------------GSLFYKSG-LQRGDIAVAINNLDLTD--PEDMFRLLQMLRNMPSL  258 (275)
T ss_pred             eEeeeEee-CCceEEEEecCCCC------------cchhhhhc-CCCcceEEEecCcccCC--HHHHHHHHHhhhcCcce
Confidence            45555544 35667888776643            44555666 99999999999999988  8899888887  45678


Q ss_pred             EEEEEEeccc
Q psy4897         253 ELEVKYLREV  262 (774)
Q Consensus       253 ~L~V~R~~~~  262 (774)
                      .|+|.|++..
T Consensus       259 qlTv~R~G~r  268 (275)
T COG3031         259 QLTVIRRGKR  268 (275)
T ss_pred             EEEEEecCcc
Confidence            8999987653

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain

Probab=91.82  E-value=0.24  Score=45.78  Aligned_cols=42  Identities=10%  Similarity=0.225  Sum_probs=35.7

Q ss_pred             ecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHH
Q psy4897         313 RNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLH  354 (774)
Q Consensus       313 R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~  354 (774)
                      |.......|++||+|.+++...++.|++.+..+...||+||.
T Consensus        61 ~r~~~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~d  102 (104)
T cd01249          61 RRKTESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMD  102 (104)
T ss_pred             ccccCCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence            333444558889999999998889999999999999999985

Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=91.50  E-value=0.58  Score=49.02  Aligned_cols=67  Identities=21%  Similarity=0.235  Sum_probs=48.5

Q ss_pred             EeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceEEEEeee
Q psy4897          27 KYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVVELEVGV  104 (774)
Q Consensus        27 ~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V~L~V~R  104 (774)
                      .++.++-+|+.+..|+            +++.-++.| ||.||..++||+.++++-  +++.++++.  .-..+.|+|.|
T Consensus       200 v~r~eki~Gyr~~pgk------------d~slF~~sg-lq~GDIavaiNnldltdp--~~m~~llq~l~~m~s~qlTv~R  264 (275)
T COG3031         200 VIRNEKIEGYRFEPGK------------DGSLFYKSG-LQRGDIAVAINNLDLTDP--EDMFRLLQMLRNMPSLQLTVIR  264 (275)
T ss_pred             EeeCCceEEEEecCCC------------Ccchhhhhc-CCCcceEEEecCcccCCH--HHHHHHHHhhhcCcceEEEEEe
Confidence            4566777777777664            456667777 999999999999999865  444444443  34678999999


Q ss_pred             cccc
Q psy4897         105 GYGR  108 (774)
Q Consensus       105 ~~~k  108 (774)
                      ++.+
T Consensus       265 ~G~r  268 (275)
T COG3031         265 RGKR  268 (275)
T ss_pred             cCcc
Confidence            8744

>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain

Probab=91.13  E-value=0.72  Score=43.29  Aligned_cols=79  Identities=23%  Similarity=0.268  Sum_probs=55.8

Q ss_pred             CCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccC-----CCCCc-EEEEEEeCCCCceeeEEEEec
Q psy4897         457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSS-----RHSDV-IVFSVRCGTPQGVATHHLRAE  530 (774)
Q Consensus       457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s-----~~~~~-~~f~~~~~t~~g~~~~~~~~e  530 (774)
                      ....||++|..|-.++|-+|.+     +..+++...-||-+..-|.++     +.... |||.|||.+-     -||--+
T Consensus        12 ~d~~rKRhYWrLDsK~Itlf~~-----e~~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~~-----vY~VG~   81 (117)
T cd01239          12 SDNRRKKHYWRLDSKAITLYQE-----ESGSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTTN-----VYFVGG   81 (117)
T ss_pred             CccceeeeEEEecCCeEEEEEc-----CCCCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEecCE-----EEEecc
Confidence            4578999999999999999998     557888888888876544432     11222 9999999742     333322


Q ss_pred             C--------------------hhHH-HHHHHHHHHH
Q psy4897         531 T--------------------HRDL-ANWARTLVQA  545 (774)
Q Consensus       531 t--------------------~~dl-~~w~~~l~~~  545 (774)
                      .                    ..|+ .+|+.+|.+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA  117 (117)
T cd01239          82 EDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA  117 (117)
T ss_pred             cccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence            1                    3455 6799999875

Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=90.97  E-value=0.38  Score=44.13  Aligned_cols=36  Identities=11%  Similarity=0.278  Sum_probs=32.3

Q ss_pred             CceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhh
Q psy4897         322 NRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHV  359 (774)
Q Consensus       322 ~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~  359 (774)
                      .++|.|..+  .++.+|.|++.+++.+|++||+.+|..
T Consensus        67 ~~~F~i~t~--~Rty~l~a~s~~e~~~Wi~ai~~v~~~  102 (103)
T cd01251          67 WYGVTLVTP--ERKFLFACETEQDRREWIAAFQNVLSR  102 (103)
T ss_pred             cceEEEEeC--CeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence            359999987  678999999999999999999999875

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain

Probab=88.70  E-value=3.3  Score=38.40  Aligned_cols=37  Identities=19%  Similarity=0.381  Sum_probs=30.6

Q ss_pred             CCCCCc-EEEEEEeCCCCceeeEEEEecChhHHHHHHHHH
Q psy4897         504 SRHSDV-IVFSVRCGTPQGVATHHLRAETHRDLANWARTL  542 (774)
Q Consensus       504 s~~~~~-~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l  542 (774)
                      ++..|+ +||.|.+.++.+  ++.|-+|+..|+..|..|+
T Consensus        64 ~~~~dRRFCFei~~~~~~~--~~~lQA~Se~~~~~Wi~A~  101 (104)
T cd01249          64 TESIDKRFCFDVEVEEKPG--VITMQALSEKDRRLWIEAM  101 (104)
T ss_pred             cCCccceeeEeeeecCCCC--eEEEEecCHHHHHHHHHhh
Confidence            344454 999999988764  5899999999999999886

Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=88.64  E-value=3.2  Score=38.44  Aligned_cols=84  Identities=12%  Similarity=0.109  Sum_probs=57.0

Q ss_pred             eEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCC-cEEEEEEeCCCCceeeEEEEecChhHHHHHH
Q psy4897         461 WVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSD-VIVFSVRCGTPQGVATHHLRAETHRDLANWA  539 (774)
Q Consensus       461 w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~-~~~f~~~~~t~~g~~~~~~~~et~~dl~~w~  539 (774)
                      -+++++.|= .|+++|.+.-.. --..+..+.+||....|+...+..+ .++|.|.+..    +++.+.++|..|...|.
T Consensus        18 ~~~R~ffLF-nD~LvY~~~~~~-~~~~~~~~~i~L~~~~v~~~~d~~~~~n~f~I~~~~----kSf~v~A~s~~eK~eWl   91 (104)
T cd01218          18 PKQRQFFLF-NDILVYGNIVIS-KKKYNKQHILPLEGVQVESIEDDGIERNGWIIKTPT----KSFAVYAATETEKREWM   91 (104)
T ss_pred             CceEEEEEe-cCEEEEEEeecC-CceeeEeeEEEccceEEEecCCcccccceEEEecCC----eEEEEEcCCHHHHHHHH
Confidence            345555554 348889654111 1234445667777766654333222 3899999874    69999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy4897         540 RTLVQATHSCV  550 (774)
Q Consensus       540 ~~l~~~~~~~~  550 (774)
                      .+|..|+....
T Consensus        92 ~~i~~ai~~~l  102 (104)
T cd01218          92 LHINKCVTDLL  102 (104)
T ss_pred             HHHHHHHHHHh
Confidence            99999987654

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=88.35  E-value=1.1  Score=41.03  Aligned_cols=54  Identities=15%  Similarity=0.168  Sum_probs=40.0

Q ss_pred             CcCcccceeeEeeecccc-cCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHH
Q psy4897         300 DTRYLPLQLCYLVRNYKH-YDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHS  355 (774)
Q Consensus       300 ~~~~ipl~~~~l~R~~~~-~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~  355 (774)
                      ..+.||+........+.. .-.+.++|.|..++  ++++|+|++..+..+|+.||..
T Consensus        43 ~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~--r~~yi~a~s~~E~~~Wi~al~k   97 (98)
T cd01244          43 KSALIKLAAIKGTEPLSDKSFVNVDIITIVCED--DTMQLQFEAPVEATDWLNALEK   97 (98)
T ss_pred             eeeeEEccceEEEEEcCCcccCCCceEEEEeCC--CeEEEECCCHHHHHHHHHHHhc
Confidence            346677776665554332 22256899998876  4799999999999999999864

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=87.97  E-value=1.2  Score=41.14  Aligned_cols=52  Identities=19%  Similarity=0.362  Sum_probs=38.8

Q ss_pred             CcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHH
Q psy4897         302 RYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHS  355 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~  355 (774)
                      +.|.+.-|...........+.++|+|..++  ++++|.|++.+++.+|+++|..
T Consensus        51 G~IdL~~~~~V~~~~~~~~~~~~f~I~tp~--R~f~l~Aete~E~~~Wi~~l~~  102 (104)
T cd01236          51 GTIDMNQCTDVVDAEARTGQKFSICILTPD--KEHFIKAETKEEISWWLNMLMV  102 (104)
T ss_pred             eEEEccceEEEeecccccCCccEEEEECCC--ceEEEEeCCHHHHHHHHHHHHh
Confidence            556666676665322222246899999886  6799999999999999999864

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=87.85  E-value=1.5  Score=41.42  Aligned_cols=57  Identities=18%  Similarity=0.299  Sum_probs=41.0

Q ss_pred             cCcccceeeEeeecccccCCCCceEEEecCCC-------------------ceeEEEeeCChHhHHHHHHHHHHHhhh
Q psy4897         301 TRYLPLQLCYLVRNYKHYDSENRTLELHSPDG-------------------VHSCILRASDASEASLWFNTLHSTLHV  359 (774)
Q Consensus       301 ~~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg-------------------~~~~~Lr~~d~~~~~~W~~Ai~~ni~~  359 (774)
                      .+.+++.-+.+.+-  ....++++|+|..+++                   .+..++.|++.+++.+|++||..++..
T Consensus        40 ~g~I~L~~~~v~~~--~~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~  115 (125)
T cd01252          40 RGIIPLENVSIREV--EDPSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISP  115 (125)
T ss_pred             eEEEECCCcEEEEc--ccCCCCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            34566665554441  1124778999988776                   145669999999999999999998863

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF12812 PDZ_1: PDZ-like domain

Probab=87.68  E-value=1.6  Score=38.36  Aligned_cols=46  Identities=24%  Similarity=0.203  Sum_probs=38.4

Q ss_pred             CeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcC
Q psy4897         201 PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG  249 (774)
Q Consensus       201 pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g  249 (774)
                      ++++.....|+++...+ +..|-.|.+|||+++.+  .+++++.+++.+
T Consensus        31 ~gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~~--Ld~f~~vvk~ip   76 (78)
T PF12812_consen   31 GGVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTPD--LDDFIKVVKKIP   76 (78)
T ss_pred             CEEEEEecCCChhhhCC-CCCCeEEEeECCcCCcC--HHHHHHHHHhCC
Confidence            45666778888888654 99999999999999988  789999888743

>KOG0790|consensus

Probab=87.47  E-value=0.034  Score=62.24  Aligned_cols=72  Identities=13%  Similarity=0.063  Sum_probs=55.1

Q ss_pred             ccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhh----hHHHHHHHhhhcCC--CCCCCceEEEEc
Q psy4897         315 YKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVL----TLKSIAEANKILGP--ALLGDLQLIGWL  386 (774)
Q Consensus       315 ~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l----~~~~~~~~n~~l~~--~~~~~~~~mGWl  386 (774)
                      .+.+..+|||.+|.|.|.++..++--+.....++||||.++.++.-    +.+.-+.|++.++-  +|+.+||.|.|-
T Consensus       269 r~eN~~KNRYkNIlPfDHtRViL~d~~~n~pgsdYINAnyi~~~~q~~~~~~~~kKsyIAtQGCL~nTVnDFW~MvwQ  346 (600)
T KOG0790|consen  269 RPENKGKNRYKNILPFDHTRVILQDRDPNIPGSDYINANYIMIEFQRLCNNSKPKKSYIATQGCLQNTVNDFWRMVWQ  346 (600)
T ss_pred             cchhhccccccccCcccceeeEeecCCCCCccchhcccchhhhhhhhccCccccccceeehhhHHHHHHHHHHHHHHh
Confidence            4567779999999999999766666667788899999998866622    22233456666666  788899999996

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=87.27  E-value=1.6  Score=39.92  Aligned_cols=52  Identities=12%  Similarity=0.142  Sum_probs=34.9

Q ss_pred             CcccceeeEeeecccc-cCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHH
Q psy4897         302 RYLPLQLCYLVRNYKH-YDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHS  355 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~-~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~  355 (774)
                      +.+++..+. .+.... .-.+++||+|..+......++.+++ ++..+|+++|..
T Consensus        45 gli~l~~~~-V~~v~ds~~~r~~cFel~~~~~~~~y~~~a~~-~er~~Wi~~l~~   97 (98)
T cd01245          45 GLIDLSDAY-LYPVHDSLFGRPNCFQIVERALPTVYYSCRSS-EERDKWIESLQA   97 (98)
T ss_pred             ceeeccccE-EEEccccccCCCeEEEEecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence            345555553 331111 1247799999988774466777777 999999999864

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=86.78  E-value=1.5  Score=39.30  Aligned_cols=50  Identities=12%  Similarity=0.304  Sum_probs=39.4

Q ss_pred             cCcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHH
Q psy4897         301 TRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHS  355 (774)
Q Consensus       301 ~~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~  355 (774)
                      .+.|++..|.+...    +.+...|+|...++ ++..|+|++.++...|++||+.
T Consensus        41 ~G~I~L~~~~i~~~----~~~~~~F~i~~~~~-r~~~L~A~s~~e~~~Wi~al~~   90 (91)
T cd01247          41 RGSIFLKKAIIAAH----EFDENRFDISVNEN-VVWYLRAENSQSRLLWMDSVVR   90 (91)
T ss_pred             cEEEECcccEEEcC----CCCCCEEEEEeCCC-eEEEEEeCCHHHHHHHHHHHhh
Confidence            46778887766652    34567999986554 7999999999999999999974

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>KOG4371|consensus

Probab=86.52  E-value=0.73  Score=56.63  Aligned_cols=88  Identities=25%  Similarity=0.251  Sum_probs=72.5

Q ss_pred             CCCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCc
Q psy4897          17 SSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK   96 (774)
Q Consensus        17 ~s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~   96 (774)
                      .+..++.|.+.+++-.++|+++..- ....|++|..+...+.|...|.+++||+++..+|+++.+.+-.....-++-.-+
T Consensus      1242 ~~~~l~~~~~~~~p~~~~~~~~~~~-~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~ 1320 (1332)
T KOG4371|consen 1242 ASAPLISVMLLKKPMATLGLSLAKR-TMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQG 1320 (1332)
T ss_pred             ccchhhhheeeeccccccccccccc-CcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccC
Confidence            3467788999999999999998743 335689999999999999999999999999999999999988776666666566


Q ss_pred             eEEEEeeec
Q psy4897          97 VVELEVGVG  105 (774)
Q Consensus        97 ~V~L~V~R~  105 (774)
                      .|.+++.|.
T Consensus      1321 p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1321 PVQITVTRE 1329 (1332)
T ss_pred             chhheehhh
Confidence            667776553

>KOG3834|consensus

Probab=86.47  E-value=2.8  Score=47.40  Aligned_cols=89  Identities=16%  Similarity=0.097  Sum_probs=59.4

Q ss_pred             cccccCCCCcEEEEEEeecCCc---ccEEEEccCCC---CCCeEEEEecCCCHHhhhCCCC-CCCEEEEE-CCEecCCCC
Q psy4897          12 EAFFFSSRDFYSENYKYTENNG---LGISIKGGKEN---KMPILISKIFKGMAADQTEQLY-VGDAILSV-NGEDLREAT   83 (774)
Q Consensus        12 ~~~~~~s~~~~~V~l~rk~~~g---LGfsI~GG~e~---~~gi~Vs~V~pGSpAaraG~Lq-vGD~ILsV-NG~~V~~~s   83 (774)
                      +.|-.+...++.|.|....+-+   ||++|+=-...   ..-.-|-+|.+++||+.+| |+ .+|-|+-+ |.+--+  .
T Consensus        69 tv~n~kt~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAg-l~~~~DYivG~~~~~~~~--~  145 (462)
T KOG3834|consen   69 TVYNSKTQEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAG-LRPYTDYIVGIWDAVMHE--E  145 (462)
T ss_pred             EEEecccceeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcc-cccccceEecchhhhccc--h
Confidence            4555667788889998888888   99999843321   1234566899999999998 66 88999888 543322  1


Q ss_pred             HHHHHHHHHhcCceEEEEee
Q psy4897          84 HDEAVKALKRAGKVVELEVG  103 (774)
Q Consensus        84 h~eaV~lLk~ag~~V~L~V~  103 (774)
                      .+....+..+-++.+.|.|.
T Consensus       146 eDl~~lIeshe~kpLklyVY  165 (462)
T KOG3834|consen  146 EDLFTLIESHEGKPLKLYVY  165 (462)
T ss_pred             HHHHHHHHhccCCCcceeEe
Confidence            22222333344667777774

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=85.87  E-value=1.5  Score=39.28  Aligned_cols=37  Identities=19%  Similarity=0.277  Sum_probs=31.0

Q ss_pred             CCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHH
Q psy4897         319 DSENRTLELHSPDGVHSCILRASDASEASLWFNTLHST  356 (774)
Q Consensus       319 d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~n  356 (774)
                      ..+.++|.|..++. ++++++|++.+++.+|++||..+
T Consensus        60 ~~k~~~F~I~~~~~-~~~~f~a~s~~e~~~Wi~ai~~~   96 (96)
T cd01260          60 VKKKYAFKVCHPVY-KSFYFAAETLDDLSQWVNHLITA   96 (96)
T ss_pred             cCCceEEEECCCCC-cEEEEEeCCHHHHHHHHHHHHhC
Confidence            34788999986653 57999999999999999999753

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=85.77  E-value=2.3  Score=36.97  Aligned_cols=38  Identities=18%  Similarity=0.551  Sum_probs=34.1

Q ss_pred             CCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHh
Q psy4897         319 DSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTL  357 (774)
Q Consensus       319 d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni  357 (774)
                      ...+++|.|...++ .++++.|++.++..+|++||+.++
T Consensus        66 ~~~~~~f~i~~~~~-~~~~~~~~s~~~~~~W~~~i~~~~  103 (104)
T PF00169_consen   66 KKRKNCFEITTPNG-KSYLFSAESEEERKRWIQAIQKAI  103 (104)
T ss_dssp             SSSSSEEEEEETTS-EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEeCCC-cEEEEEcCCHHHHHHHHHHHHHHh
Confidence            45788999999988 589999999999999999999876

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]

Probab=85.66  E-value=0.054  Score=57.35  Aligned_cols=64  Identities=11%  Similarity=0.057  Sum_probs=51.5

Q ss_pred             ccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhhHHHHHHHhhhcCC--CCCCCceEEEEccee
Q psy4897         317 HYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGP--ALLGDLQLIGWLARK  389 (774)
Q Consensus       317 ~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~~~~~~~n~~l~~--~~~~~~~~mGWl~~~  389 (774)
                      .++.||||=+|-|+++++...-+.   ....|||||.+.-+.. .+     |+++++|  .+.++||+|.|.+--
T Consensus        52 ~~~~rNRYsnIvPYe~tRV~Lk~~---k~~~DYINAS~ik~~~-~~-----yIAtQgP~~~t~ddFW~mvw~n~~  117 (302)
T COG5599          52 TNYARNRYSNIVPYEHTRVHLKYG---KSINDYINASYIKTPR-GK-----YIATQGPKPETIDDFWKMVWHNVP  117 (302)
T ss_pred             cccccccccccccccCceeeccCC---CchhhcccceeeecCC-Cc-----eEEecCCCCchHHHHHHHHHhcCC
Confidence            456789999999999997555444   4678999999887776 22     8899999  788899999999754

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=85.57  E-value=2.2  Score=49.35  Aligned_cols=84  Identities=15%  Similarity=0.126  Sum_probs=51.7

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEe---eec-cCCCCCcEEEEEEeCCCCceeeEEEEecChh
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTR---LVS-SSRHSDVIVFSVRCGTPQGVATHHLRAETHR  533 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r---~~~-~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~  533 (774)
                      ..+|+.+|+.+++..+.+..+-+-+. ....|.. -++..+.   .|. .......++|.+.+-   +++..||.+++..
T Consensus       389 ~~~wk~ry~~l~~~~l~~~~~~~~~~-~~~~~~~-~~l~~~~~v~pv~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~  463 (478)
T PTZ00267        389 DMRWKKRYFYIGNGQLRISLSENPEN-DGVAPKS-VNLETVNDVFPVPEVYSQKHPNQLVLWFN---NGQKIIAYAKTAE  463 (478)
T ss_pred             CcchhhheEEecCCceEEEecccccc-CCCCCcc-ccHHHhcccccccHHhcCCCCceEEEEec---CCcEEEEecCChH
Confidence            34699999999988888865533221 1121111 1121111   110 012234588988654   3367889999999


Q ss_pred             HHHHHHHHHHHHH
Q psy4897         534 DLANWARTLVQAT  546 (774)
Q Consensus       534 dl~~w~~~l~~~~  546 (774)
                      ++..|.++|+.++
T Consensus       464 ~~~~W~~~~~~~~  476 (478)
T PTZ00267        464 DRDQWISKFQRAC  476 (478)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999876

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=85.32  E-value=2.1  Score=38.66  Aligned_cols=51  Identities=22%  Similarity=0.309  Sum_probs=37.2

Q ss_pred             cCcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHH
Q psy4897         301 TRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHST  356 (774)
Q Consensus       301 ~~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~n  356 (774)
                      .+.|++..+.+...   .+.+.+.|+|..+  .+++.++|++.+++..|++||+..
T Consensus        43 ~G~I~L~~~~~~~~---~~~~~~~F~i~t~--~r~y~l~A~s~~e~~~Wi~al~~~   93 (95)
T cd01265          43 LGRVDLSGAAFTYD---PREEKGRFEIHSN--NEVIALKASSDKQMNYWLQALQSK   93 (95)
T ss_pred             cceEECCccEEEcC---CCCCCCEEEEEcC--CcEEEEECCCHHHHHHHHHHHHhh
Confidence            35566655544431   2224679999875  467999999999999999999865

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=84.20  E-value=2.5  Score=38.67  Aligned_cols=54  Identities=17%  Similarity=0.193  Sum_probs=39.3

Q ss_pred             CcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         302 RYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      +.+|+..+.+.. .......+++|.|.++  ..++.+.|.+.++..+|+.+|+.+|.
T Consensus        45 ~~i~L~~~~V~~-~~~~~~~~~~F~I~~~--~ks~~l~A~s~~Ek~~Wi~~i~~aI~   98 (99)
T cd01220          45 GHLPLRGMLTEE-SEHEWGVPHCFTIFGG--QCAITVAASTRAEKEKWLADLSKAIA   98 (99)
T ss_pred             EEEEcCceEEee-ccCCcCCceeEEEEcC--CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence            445565554432 1111235689999965  46799999999999999999999986

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF12812 PDZ_1: PDZ-like domain

Probab=84.19  E-value=2.3  Score=37.30  Aligned_cols=46  Identities=24%  Similarity=0.206  Sum_probs=36.3

Q ss_pred             CeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcC
Q psy4897          47 PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG   95 (774)
Q Consensus        47 gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag   95 (774)
                      +.++.....|+++.+- ++..|-.|.+|||+++.++  ++.++.+++..
T Consensus        31 ~gv~v~~~~g~~~~~~-~i~~g~iI~~Vn~kpt~~L--d~f~~vvk~ip   76 (78)
T PF12812_consen   31 GGVYVAVSGGSLAFAG-GISKGFIITSVNGKPTPDL--DDFIKVVKKIP   76 (78)
T ss_pred             CEEEEEecCCChhhhC-CCCCCeEEEeECCcCCcCH--HHHHHHHHhCC
Confidence            4556667889998874 4999999999999999977  56666676654

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=83.96  E-value=1.9  Score=39.27  Aligned_cols=36  Identities=14%  Similarity=0.242  Sum_probs=31.1

Q ss_pred             CCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         321 ENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       321 r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      ++++|+|..+  .++.+++|++.+++.+|+.||...|.
T Consensus        64 ~~~~F~I~t~--~rt~~~~A~s~~e~~~Wi~ai~~~~~   99 (100)
T cd01233          64 GPNTFAVCTK--HRGYLFQALSDKEMIDWLYALNPLYA   99 (100)
T ss_pred             CCcEEEEECC--CCEEEEEcCCHHHHHHHHHHhhhhhc
Confidence            5689999765  56799999999999999999987664

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=82.86  E-value=2.7  Score=39.74  Aligned_cols=41  Identities=12%  Similarity=0.297  Sum_probs=36.1

Q ss_pred             CCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhh
Q psy4897         319 DSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVL  360 (774)
Q Consensus       319 d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l  360 (774)
                      .++.+.|-|..+++. ..+++|.+.+++..|+++|+.++...
T Consensus        74 ~Kr~~VF~L~~~~g~-~~lfqA~~~ee~~~Wi~~I~~~~~~~  114 (117)
T cd01230          74 SKKPHVFRLRTADWR-EFLFQTSSLKELQSWIERINVVAAAF  114 (117)
T ss_pred             cCCCcEEEEEcCCCC-EEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            458889999999998 68899999999999999999887643

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=82.60  E-value=2.7  Score=38.33  Aligned_cols=37  Identities=14%  Similarity=0.277  Sum_probs=33.4

Q ss_pred             CCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         320 SENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       320 ~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      ..+++|.|.+.+  +++++.|++.++...|++||..+|.
T Consensus        64 ~~~~~F~I~~~~--rsf~l~A~s~eEk~~W~~ai~~~i~  100 (101)
T cd01219          64 ERPHSFLVSGKQ--RCLELQARTQKEKNDWVQAIFSIID  100 (101)
T ss_pred             CcCceEEEecCC--cEEEEEcCCHHHHHHHHHHHHHHhh
Confidence            367899998887  7999999999999999999999875

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=82.15  E-value=2.7  Score=36.51  Aligned_cols=35  Identities=17%  Similarity=0.424  Sum_probs=30.4

Q ss_pred             CCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHH
Q psy4897         321 ENRTLELHSPDGVHSCILRASDASEASLWFNTLHST  356 (774)
Q Consensus       321 r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~n  356 (774)
                      ++++|.|..+++ ..+++++++.+++..|++||..+
T Consensus        57 ~~~~F~i~~~~~-~~~~~~a~s~~e~~~Wi~al~~a   91 (91)
T cd01246          57 DDKCFTIDTGGD-KTLHLRANSEEERQRWVDALELA   91 (91)
T ss_pred             CCcEEEEEcCCC-CEEEEECCCHHHHHHHHHHHHhC
Confidence            478999998766 58999999999999999999753

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=81.38  E-value=3.3  Score=38.10  Aligned_cols=50  Identities=22%  Similarity=0.521  Sum_probs=38.9

Q ss_pred             cCcccceeeEeeecccccCC-CCceEEEecCCCceeEEEeeCChHhHHHHHHHHH
Q psy4897         301 TRYLPLQLCYLVRNYKHYDS-ENRTLELHSPDGVHSCILRASDASEASLWFNTLH  354 (774)
Q Consensus       301 ~~~ipl~~~~l~R~~~~~d~-r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~  354 (774)
                      .+.|++.-|.-...  ..|. ++++|+|..+|  +++.|.|++.+++..|++||.
T Consensus        49 ~~vI~L~~c~~v~~--~~d~k~~~~f~i~t~d--r~f~l~aese~E~~~Wi~~i~   99 (101)
T cd01257          49 KRVIPLESCFNINK--RADAKHRHLIALYTRD--EYFAVAAENEAEQDSWYQALL   99 (101)
T ss_pred             eEEEEccceEEEee--ccccccCeEEEEEeCC--ceEEEEeCCHHHHHHHHHHHh
Confidence            45777777765542  2234 46899999977  589999999999999999985

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>KOG0792|consensus

Probab=80.60  E-value=0.69  Score=57.14  Aligned_cols=67  Identities=28%  Similarity=0.553  Sum_probs=58.7

Q ss_pred             cCCcccEEEEccCCCC-----CCeEEEEec-------------CCCHHhhhC-CCCCCCEEEEECCEecCCCCHHHHHHH
Q psy4897          30 ENNGLGISIKGGKENK-----MPILISKIF-------------KGMAADQTE-QLYVGDAILSVNGEDLREATHDEAVKA   90 (774)
Q Consensus        30 ~~~gLGfsI~GG~e~~-----~gi~Vs~V~-------------pGSpAaraG-~LqvGD~ILsVNG~~V~~~sh~eaV~l   90 (774)
                      +.+.+||-++||.+..     .+..++.|.             |+++|+... ++..||+++.|||.++....|+..|..
T Consensus       714 ~~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~  793 (1144)
T KOG0792|consen  714 PPGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSL  793 (1144)
T ss_pred             CCccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHH
Confidence            3789999999999875     788899999             999987643 388999999999999999999999999


Q ss_pred             HHhcCc
Q psy4897          91 LKRAGK   96 (774)
Q Consensus        91 Lk~ag~   96 (774)
                      ++++..
T Consensus       794 irs~r~  799 (1144)
T KOG0792|consen  794 IRSPRE  799 (1144)
T ss_pred             Hhhhhh
Confidence            998654

>KOG4407|consensus

Probab=80.39  E-value=0.77  Score=57.50  Aligned_cols=58  Identities=24%  Similarity=0.300  Sum_probs=52.7

Q ss_pred             CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeee
Q psy4897          46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGV  104 (774)
Q Consensus        46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R  104 (774)
                      .-+||..|.+++||.-+. ||.||+++.||..++.+..+.+++.++++....+++.|..
T Consensus       143 eT~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P  200 (1973)
T KOG4407|consen  143 ETIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVP  200 (1973)
T ss_pred             hhhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCCCCCCceecc
Confidence            358999999999999986 9999999999999999999999999999987777777753

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=80.23  E-value=3.3  Score=46.18  Aligned_cols=54  Identities=24%  Similarity=0.284  Sum_probs=39.2

Q ss_pred             EEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce---EEEEeee
Q psy4897          49 LISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV---VELEVGV  104 (774)
Q Consensus        49 ~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~---V~L~V~R  104 (774)
                      ++..+.++++|+.+| +++||+|+++|+.++.++..-...... ..+..   +.+.+.|
T Consensus       132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~i~~~~  188 (375)
T COG0750         132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVASWDDVRRLLVA-AAGDVFNLLTILVIR  188 (375)
T ss_pred             eeeecCCCCHHHHcC-CCCCCEEEeECCEEccCHHHHHHHHHh-ccCCcccceEEEEEe
Confidence            444799999999998 999999999999999988443222222 23333   5666665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	774
1z87_A	263	Solution Structure Of The Split Ph-Pdz Supramodule		1e-49
1qav_A	90	Unexpected Modes Of Pdz Domain Scaffolding Revealed		4e-31
1z86_A	87	Solution Structure Of The Pdz Domain Of Alpha-Syntr		4e-31
2pdz_A	86	Solution Structure Of The Syntrophin Pdz Domain In		1e-30
2vrf_A	95	Crystal Structure Of The Human Beta-2-Syntrophin Pd		4e-30
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		4e-20
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		1e-10
4e34_A	87	Crystal Structure Of Cftr Associated Ligand (Cal) P		1e-15
2dc2_A	103	Solution Structure Of Pdz Domain Length = 103		1e-15
2lob_A	112	Pdz Domain Of Cal (Cystic Fibrosis Transmembrane Re		2e-15
3rl7_B	107	Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc L		3e-11
1zok_A	93	Pdz1 Domain Of Synapse Associated Protein 97 Length		4e-11
3zrt_A	199	Crystal Structure Of Human Psd-95 Pdz1-2 Length = 1		4e-11
3zrt_A	199	Crystal Structure Of Human Psd-95 Pdz1-2 Length = 1		6e-11
2ka9_A	189	Solution Structure Of Psd-95 Pdz12 Complexed With C		4e-11
2ka9_A	189	Solution Structure Of Psd-95 Pdz12 Complexed With C		6e-11
3gsl_A	196	Crystal Structure Of Psd-95 Tandem Pdz Domains 1 An		5e-11
3gsl_A	196	Crystal Structure Of Psd-95 Tandem Pdz Domains 1 An		7e-11
1rgr_A	99	Cyclic Peptides Targeting Pdz Domains Of Psd-95: St		8e-11
1rgr_A	99	Cyclic Peptides Targeting Pdz Domains Of Psd-95: St		1e-10
1kef_A	93	Pdz1 Of Sap90 Length = 93		8e-11
1kef_A	93	Pdz1 Of Sap90 Length = 93		1e-10
1iu0_A	91	The First Pdz Domain Of Psd-95 Length = 91		1e-10
1iu0_A	91	The First Pdz Domain Of Psd-95 Length = 91		1e-10
1be9_A	119	The Third Pdz Domain From The Synaptic Protein Psd-		1e-10
1tp3_A	119	Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv		1e-10
3jxt_A	104	Crystal Structure Of The Third Pdz Domain Of Sap-10		2e-10
1um7_A	113	Solution Structure Of The Third Pdz Domain Of Synap		2e-10
2dm8_A	116	Solution Structure Of The Eighth Pdz Domain Of Huma		8e-10
2wl7_A	102	Crystal Structure Of The Psd93 Pdz1 Domain Length =		9e-10
3k82_A	98	Crystal Structure Of The Third Pdz Domain Of Psd-95		2e-09
3i4w_A	104	Crystal Structure Of The Third Pdz Domain Of Psd-95		2e-09
2cs5_A	119	Solution Structure Of Pdz Domain Of Protein Tyrosin		2e-09
3nfk_A	107	Crystal Structure Of The Ptpn4 Pdz Domain Complexed		2e-09
2vph_A	100	Crystal Structure Of The Human Protein Tyrosine Pho		2e-09
2he2_A	102	Crystal Structure Of The 3rd Pdz Domain Of Human Di		5e-09
2opg_A	98	The Crystal Structure Of The 10th Pdz Domain Of Mpd		5e-09
2byg_A	117	2nd Pdz Domain Of Discs Large Homologue 2 Length =		7e-09
2byg_A	117	2nd Pdz Domain Of Discs Large Homologue 2 Length =		1e-07
2awx_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		2e-08
2awu_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		2e-08
2r4h_B	112	Crystal Structure Of A C1190s Mutant Of The 6th Pdz		2e-08
2r4h_B	112	Crystal Structure Of A C1190s Mutant Of The 6th Pdz		3e-06
2ehr_A	117	Solution Structure Of The Sixth Pdz Domain Of Human		2e-08
1uez_A	101	Solution Structure Of The First Pdz Domain Of Human		3e-08
4amh_A	106	Influence Of Circular Permutation On The Folding Pa		3e-08
2g2l_A	105	Crystal Structure Of The Second Pdz Domain Of Sap97		4e-08
4g69_A	100	Structure Of The Human Discs Large 1 Pdz2 - Adenoma		4e-08
3rl8_A	105	Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc L		4e-08
2oqs_A	97	Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV		4e-08
2x7z_A	99	Crystal Structure Of The Sap97 Pdz2 I342w C378a Mut		4e-08
2qg1_A	92	Crystal Structure Of The 11th Pdz Domain Of Mpdz (M		5e-08
2qg1_A	92	Crystal Structure Of The 11th Pdz Domain Of Mpdz (M		6e-08
2dkr_A	93	Solution Structure Of The Pdz Domain From Human Lin		7e-08
1n7e_A	97	Crystal Structure Of The Sixth Pdz Domain Of Grip1		1e-07
2fe5_A	94	The Crystal Structure Of The Second Pdz Domain Of H		1e-07
2iwo_A	120	12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz		1e-07
2iwo_A	120	12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz		2e-07
2i0l_A	84	X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The		1e-07
1wha_A	105	Solution Structure Of The Second Pdz Domain Of Huma		1e-07
2aww_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		1e-07
2qt5_A	200	Crystal Structure Of Grip1 Pdz12 In Complex With Th		1e-07
2i1n_A	102	Crystal Structure Of The 1st Pdz Domain Of Human Dl		2e-07
2i1n_A	102	Crystal Structure Of The 1st Pdz Domain Of Human Dl		3e-07
1wfv_A	103	Solution Structure Of The Fifth Pdz Domain Of Human		2e-07
1qlc_A	95	Solution Structure Of The Second Pdz Domain Of Post		3e-07
1qlc_A	95	Solution Structure Of The Second Pdz Domain Of Post		7e-07
2fne_A	117	The Crystal Structure Of The 13th Pdz Domain Of Mpd		3e-07
2fne_A	117	The Crystal Structure Of The 13th Pdz Domain Of Mpd		4e-07
2ain_A	93	Solution Structure Of The Af-6 Pdz Domain Complexed		4e-07
1t2m_A	101	Solution Structure Of The Pdz Domain Of Af-6 Length		4e-07
1xz9_A	101	Structure Of Af-6 Pdz Domain Length = 101		5e-07
2eeh_A	100	Solution Structure Of First Pdz Domain Of Pdz Domai		7e-07
3axa_A	106	Crystal Structure Of Afadin Pdz Domain In Complex W		9e-07
3k1r_A	192	Structure Of Harmonin Npdz1 In Complex With The Sam		2e-06
2eno_A	120	Solution Structure Of The Pdz Domain From Human Syn		2e-06
2jin_A	102	Crystal Structure Of Pdz Domain Of Synaptojanin-2 B		3e-06
2jik_A	101	Crystal Structure Of Pdz Domain Of Synaptojanin-2 B		3e-06
3pdz_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		6e-06
3pdz_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		1e-05
1d5g_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		6e-06
1d5g_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		1e-05
2iwq_A	123	7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz		7e-06
1wi2_A	104	Solution Structure Of The Pdz Domain From Riken Cdn		7e-06
2fcf_A	103	The Crystal Structure Of The 7th Pdz Domain Of Mpdz		8e-06
2adz_A	178	Solution Structure Of The Joined Ph Domain Of Alpha		9e-06
1uew_A	114	Solution Structure Of The Forth Pdz Domain Of Human		1e-05
1ufx_A	103	Solution Structure Of The Third Pdz Domain Of Human		1e-05
2csj_A	117	Solution Structure Of N-Terminal Pdz Domain From Mo		2e-05
1x5q_A	110	Solution Structure Of The First Pdz Domain Of Scrib		2e-05
1vj6_A	102	Pdz2 From Ptp-Bl In Complex With The C-Terminal Lig		2e-05
1vj6_A	102	Pdz2 From Ptp-Bl In Complex With The C-Terminal Lig		4e-05
1gm1_A	94	Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94		2e-05
1gm1_A	94	Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94		5e-05
2w4f_A	97	Crystal Structure Of The First Pdz Domain Of Human		3e-05
1uf1_A	128	Solution Structure Of The Second Pdz Domain Of Huma		3e-05
1x6d_A	119	Solution Structures Of The Pdz Domain Of Human Inte		4e-05
2jil_A	97	Crystal Structure Of 2nd Pdz Domain Of Glutamate Re		5e-05
1pdr_A	99	Crystal Structure Of The Third Pdz Domain From The		9e-05
1b8q_A	127	Solution Structure Of The Extended Neuronal Nitric		9e-05
1qav_B	115	Unexpected Modes Of Pdz Domain Scaffolding Revealed		9e-05
1qau_A	112	Unexpected Modes Of Pdz Domain Scaffolding Revealed		9e-05
1uhp_A	107	Solution Structure Of Rsgi Ruh-005, A Pdz Domain In		1e-04
1uhp_A	107	Solution Structure Of Rsgi Ruh-005, A Pdz Domain In		2e-04
1q7x_A	108	Solution Structure Of The Alternatively Spliced Pdz		1e-04
1q7x_A	108	Solution Structure Of The Alternatively Spliced Pdz		2e-04
1i16_A	130	Structure Of Interleukin 16: Implications For Funct		1e-04
1i16_A	130	Structure Of Interleukin 16: Implications For Funct		1e-04
2koh_A	111	Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve		1e-04
2koh_A	111	Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve		1e-04
1x5n_A	114	Solution Structure Of The Second Pdz Domain Of Harm		1e-04
2k1z_A	104	Solution Structure Of Par-3 Pdz3 Length = 104		2e-04
2k1z_A	104	Solution Structure Of Par-3 Pdz3 Length = 104		2e-04
2i0i_A	85	X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The		2e-04
2i0i_A	85	X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The		3e-04
3b76_A	118	Crystal Structure Of The Third Pdz Domain Of Human		2e-04
1ozi_A	99	The Alternatively Spliced Pdz2 Domain Of Ptp-Bl Len		3e-04
1ozi_A	99	The Alternatively Spliced Pdz2 Domain Of Ptp-Bl Len		7e-04
1p1d_A	196	Structural Insights Into The Inter-Domain Chaperoni		6e-04
2djt_A	104	Solution Structures Of The Pdz Domain Of Human Unna		7e-04
1ihj_A	98	Crystal Structure Of The N-Terminal Pdz Domain Of I		7e-04
1wg6_A	127	Solution Structure Of Pdz Domain In Protein Xp_1108		8e-04

>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of Alpha- Syntrophin Length = 263

Iteration: 1
 Score =  194 bits (494), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 108/267 (40%), Positives = 156/267 (58%), Gaps = 22/267 (8%)
Query: 97  VVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVD 156
           ++EL  G G G  G        +W +V +SL ED ++++  +           LN     
Sbjct: 11  LLELRCGAGSGAGGE-------RWQRVLLSLAEDALTVSPADGEPGPEPEPAQLNGAAEP 63
Query: 157 SISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQT 216
             +       +P+++  Q+R + V+K++  GLGISIKGG+ENKMPILISKIFKG+AADQT
Sbjct: 64  GAA----PPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQT 119
Query: 217 EQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVG 276
           E L+VGDAILSVNGEDL  ATHDEAV+ALK+ GK V LEVKY++EV+PYF+ ++  + VG
Sbjct: 120 EALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVG 179
Query: 277 WE------LQRGFLSDXXXXXXXXXXXRADTRYLPLQLCYLVRNYKHYDSENRTLELHSP 330
           W+      LQR   S             ++ +++ L++ Y+ R     D E R LE+ + 
Sbjct: 180 WDSPPASPLQRQPSSPGPQPRNL-----SEAKHVSLKMAYVSRRCTPTDPEPRYLEICAA 234
Query: 331 DGVHSCILRASDASEASLWFNTLHSTL 357
           DG  +  LRA D + A  W   + + +
Sbjct: 235 DGQDAVFLRAKDEASARSWAGAIQAQI 261

>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By Structure Of Nnos-Syntrophin Complex Length = 90

Iteration: 1
 Score =  133 bits (335), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/87 (74%), Positives = 77/87 (88%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
           Q+R + V+K++  GLGISIKGG+ENKMPILISKIFKG+AADQTE L+VGDAILSVNGEDL
Sbjct: 4   QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDL 63
Query: 234 REATHDEAVKALKRAGKLVELEVKYLR 260
             ATHDEAV+ALK+ GK V LEVKY++
Sbjct: 64  SSATHDEAVQALKKTGKEVVLEVKYMK 90

>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin Length = 87

Iteration: 1
 Score =  133 bits (335), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/87 (74%), Positives = 77/87 (88%)
Query: 175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
           +R + V+K++  GLGISIKGG+ENKMPILISKIFKG+AADQTE L+VGDAILSVNGEDL 
Sbjct: 1   RRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLS 60
Query: 235 EATHDEAVKALKRAGKLVELEVKYLRE 261
            ATHDEAV+ALK+ GK V LEVKY++E
Sbjct: 61  SATHDEAVQALKKTGKEVVLEVKYMKE 87

>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex With The Peptide Gvkeslv, Nmr, 15 Structures Length = 86

Iteration: 1
 Score =  132 bits (331), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/86 (74%), Positives = 76/86 (88%)
Query: 175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
           +R + V+K++  GLGISIKGG+ENKMPILISKIFKG+AADQTE L+VGDAILSVNGEDL 
Sbjct: 1   RRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLS 60
Query: 235 EATHDEAVKALKRAGKLVELEVKYLR 260
            ATHDEAV+ALK+ GK V LEVKY++
Sbjct: 61  SATHDEAVQALKKTGKEVVLEVKYMK 86

>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz Domain Length = 95

Iteration: 1
 Score =  129 bits (325), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 64/87 (73%), Positives = 75/87 (86%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           R +RV K E  GLGISIKGG+EN+MPILISKIF G+AADQ+  L +GDAILSVNG DLR+
Sbjct: 5   RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 64
Query: 236 ATHDEAVKALKRAGKLVELEVKYLREV 262
           ATHD+AV+ALKRAGK V LEVK++REV
Sbjct: 65  ATHDQAVQALKRAGKEVLLEVKFIREV 91

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 116/234 (49%), Gaps = 12/234 (5%)
Query: 33  GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
           GLG SI GG  N+ +P    I ++KI +G AA +  +L +GD IL+VN   L +  H++A
Sbjct: 166 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 225
Query: 88  VKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLN 147
           V ALK    VV L+V          ++Y        +    ++ IS +     D  T + 
Sbjct: 226 VAALKNTYDVVYLKVAKP-SNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMT 284
Query: 148 GTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKI 207
            T            +   DIP      +RI+  + S   GLG +I GG E+   I IS I
Sbjct: 285 PTSPRRYSPVAKDLLGEEDIP---REPRRIVIHRGS--TGLGFNIVGG-EDGEGIFISFI 338
Query: 208 FKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
             G  AD + +L  GD ILSVNG DLR A+H++A  ALK AG+ V +  +Y  E
Sbjct: 339 LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 392

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 185 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
           N+GLG SI GG +N        I I+KI  G AA Q  +L V D+IL VN  D+RE TH 
Sbjct: 69  NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 128
Query: 240 EAVKALKRAGKLVELEV 256
            AV+ALK AG +V L V
Sbjct: 129 AAVEALKEAGSIVRLYV 145

>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz Domain Bound To Ical36 (Ansrwptsii) Peptide Length = 87

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 57/84 (67%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           R + + K ++ GLGISI GGKE+ +PILIS+I  G  AD+   L+VGDAIL+VNG +LR+
Sbjct: 4   RKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRD 63
Query: 236 ATHDEAVKALKRAGKLVELEVKYL 259
             H EAV  L +    +E EV Y+
Sbjct: 64  TKHKEAVTILSQQRGEIEFEVVYV 87

>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain Length = 103

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 57/84 (67%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           R + + K ++ GLGISI GGKE+ +PILIS+I  G  AD+   L+VGDAIL+VNG +LR+
Sbjct: 11  RKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRD 70
Query: 236 ATHDEAVKALKRAGKLVELEVKYL 259
             H EAV  L +    +E EV Y+
Sbjct: 71  TKHKEAVTILSQQRGEIEFEVVYV 94

>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane Regulator-Associated Ligand) Length = 112

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 57/84 (67%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           R + + K ++ GLGISI GGKE+ +PILIS+I  G  AD+   L+VGDAIL+VNG +LR+
Sbjct: 29  RKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRD 88
Query: 236 ATHDEAVKALKRAGKLVELEVKYL 259
             H EAV  L +    +E EV Y+
Sbjct: 89  TKHKEAVTILSQQRGEIEFEVVYV 112

>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc Length = 107

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 185 NNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
           N+GLG SI GG +N        I I+KI  G AA Q  +L V D IL VN  D+R+ TH 
Sbjct: 21  NSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHS 80
Query: 240 EAVKALKRAGKLVELEVKYLREVT 263
           +AV+ALK AG +V L VK  + V+
Sbjct: 81  KAVEALKEAGSIVRLYVKRRKPVS 104

>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97 Length = 93

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 48/78 (61%), Gaps = 5/78 (6%)
Query: 185 NNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
           N+GLG SI GG +N        I I+KI  G AA Q  +L V D IL VN  D+R+ TH 
Sbjct: 11  NSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHS 70
Query: 240 EAVKALKRAGKLVELEVK 257
           +AV+ALK AG +V L VK
Sbjct: 71  KAVEALKEAGSIVRLYVK 88

>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2 Length = 199

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 31  NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
           N+GLG SI GG +N        I I+KI  G AA Q  +L V D+IL VN  D+RE TH 
Sbjct: 22  NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 81
Query: 86  EAVKALKRAGKVVELEV 102
            AV+ALK AG +V L V
Sbjct: 82  AAVEALKEAGSIVRLYV 98

>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2 Length = 199

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 185 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
           N+GLG SI GG +N        I I+KI  G AA Q  +L V D+IL VN  D+RE TH 
Sbjct: 22  NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 81
Query: 240 EAVKALKRAGKLVELEV 256
            AV+ALK AG +V L V
Sbjct: 82  AAVEALKEAGSIVRLYV 98

>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin Peptide Length = 189

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 31  NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
           N+GLG SI GG +N        I I+KI  G AA Q  +L V D+IL VN  D+RE TH 
Sbjct: 12  NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 71
Query: 86  EAVKALKRAGKVVELEV 102
            AV+ALK AG +V L V
Sbjct: 72  AAVEALKEAGSIVRLYV 88

>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin Peptide Length = 189

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 185 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
           N+GLG SI GG +N        I I+KI  G AA Q  +L V D+IL VN  D+RE TH 
Sbjct: 12  NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 71
Query: 240 EAVKALKRAGKLVELEV 256
            AV+ALK AG +V L V
Sbjct: 72  AAVEALKEAGSIVRLYV 88

>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2 Length = 196

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 31  NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
           N+GLG SI GG +N        I I+KI  G AA Q  +L V D+IL VN  D+RE TH 
Sbjct: 15  NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 74
Query: 86  EAVKALKRAGKVVELEV 102
            AV+ALK AG +V L V
Sbjct: 75  AAVEALKEAGSIVRLYV 91

>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2 Length = 196

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 185 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
           N+GLG SI GG +N        I I+KI  G AA Q  +L V D+IL VN  D+RE TH 
Sbjct: 15  NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 74
Query: 240 EAVKALKRAGKLVELEV 256
            AV+ALK AG +V L V
Sbjct: 75  AAVEALKEAGSIVRLYV 91

>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95: Structural Basis For Enhanced Affinity And Enzymatic Stability Length = 99

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 31  NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
           N+GLG SI GG +N        I I+KI  G AA Q  +L V D+IL VN  D+RE TH 
Sbjct: 11  NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 70
Query: 86  EAVKALKRAGKVVELEV 102
            AV+ALK AG +V L V
Sbjct: 71  AAVEALKEAGSIVRLYV 87

>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95: Structural Basis For Enhanced Affinity And Enzymatic Stability Length = 99

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 185 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
           N+GLG SI GG +N        I I+KI  G AA Q  +L V D+IL VN  D+RE TH 
Sbjct: 11  NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 70
Query: 240 EAVKALKRAGKLVELEV 256
            AV+ALK AG +V L V
Sbjct: 71  AAVEALKEAGSIVRLYV 87

>pdb|1KEF|A Chain A, Pdz1 Of Sap90 Length = 93

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 31  NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
           N+GLG SI GG +N        I I+KI  G AA Q  +L V D+IL VN  D+RE TH 
Sbjct: 11  NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 70
Query: 86  EAVKALKRAGKVVELEV 102
            AV+ALK AG +V L V
Sbjct: 71  AAVEALKEAGSIVRLYV 87

>pdb|1KEF|A Chain A, Pdz1 Of Sap90 Length = 93

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 185 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
           N+GLG SI GG +N        I I+KI  G AA Q  +L V D+IL VN  D+RE TH 
Sbjct: 11  NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 70
Query: 240 EAVKALKRAGKLVELEV 256
            AV+ALK AG +V L V
Sbjct: 71  AAVEALKEAGSIVRLYV 87

>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95 Length = 91

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 31  NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
           N+GLG SI GG +N        I I+KI  G AA Q  +L V D+IL VN  D+RE TH 
Sbjct: 12  NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 71
Query: 86  EAVKALKRAGKVVELEV 102
            AV+ALK AG +V L V
Sbjct: 72  AAVEALKEAGSIVRLYV 88

>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95 Length = 91

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 185 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
           N+GLG SI GG +N        I I+KI  G AA Q  +L V D+IL VN  D+RE TH 
Sbjct: 12  NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 71
Query: 240 EAVKALKRAGKLVELEV 256
            AV+ALK AG +V L V
Sbjct: 72  AAVEALKEAGSIVRLYV 88

>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In Complex With A C-Terminal Peptide Derived From Cript. Length = 119

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 161 FMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLY 220
           F+   DIP      +RI+  + S   GLG +I GG E+   I IS I  G  AD + +L 
Sbjct: 5   FLGEEDIP---REPRRIVIHRGS--TGLGFNIIGG-EDGEGIFISFILAGGPADLSGELR 58
Query: 221 VGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVG 276
            GD ILSVNG DLR A+H++A  ALK AG+ V +  +Y  E    F   S ++  G
Sbjct: 59  KGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVNSSG 114

>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv Peptide Ligand Length = 119

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 161 FMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLY 220
           F+   DIP      +RI+  + S   GLG +I GG E+   I IS I  G  AD + +L 
Sbjct: 5   FLGEEDIP---REPRRIVIHRGS--TGLGFNIVGG-EDGEGIFISFILAGGPADLSGELR 58
Query: 221 VGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVG 276
            GD ILSVNG DLR A+H++A  ALK AG+ V +  +Y  E    F   S +   G
Sbjct: 59  KGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDSSG 114

>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In Complex With A Fluorogenic Peptide-Based Ligand Length = 104

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
           D     ++II  K S   GLG +I GG E+   I +S I  G  AD + +L  GD ILSV
Sbjct: 8   DFTREPRKIILHKGS--TGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSV 64
Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKY 258
           NG +LR ATH++A  ALKRAG+ V +  +Y
Sbjct: 65  NGVNLRNATHEQAAAALKRAGQSVTIVAQY 94

>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse- Associated Protein 102 Length = 113

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
           ++II  K S   GLG +I GG E+   I +S I  G  AD + +L  GD ILSVNG +LR
Sbjct: 17  RKIILHKGS--TGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLR 73
Query: 235 EATHDEAVKALKRAGKLVELEVKYLRE 261
            ATH++A  ALKRAG+ V +  +Y  E
Sbjct: 74  NATHEQAAAALKRAGQSVTIVAQYRPE 100

>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad- Like Protein Length = 116

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 171 VENQKRIIRVKKSENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVN 229
           V  Q+ II + K   +GLG+SI GGK+  +  I+I ++++  AA +  +L+ GD IL VN
Sbjct: 14  VPGQEMIIEISKG-RSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVN 72
Query: 230 GEDLREATHDEAVKALKRAGKLVELEV 256
           G DLR ++H+EA+ AL++  + V L V
Sbjct: 73  GVDLRNSSHEEAITALRQTPQKVRLVV 99

>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain Length = 102

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 185 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
           N+GLG SI GG +N        I I+KI  G AA +  +L V D IL VN  D+ E +H 
Sbjct: 19  NSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHS 78
Query: 240 EAVKALKRAGKLVELEVKYLREV 262
           +AV+ALK AG +V L V+  R +
Sbjct: 79  KAVEALKEAGSIVRLYVRRRRPI 101

>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 98

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 166 DIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAI 225
           DIP      +RI+  + S   GLG +I GG E    I IS I  G  AD + +L  GD I
Sbjct: 2   DIP---REPRRIVIHRGS--TGLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQI 55
Query: 226 LSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
           LSVNG DLR A+H++A  ALK AG+ V +  +Y  E
Sbjct: 56  LSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 91

>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 104

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 166 DIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAI 225
           DIP      +RI+  + S   GLG +I GG E    I IS I  G  AD + +L  GD I
Sbjct: 7   DIP---REPRRIVIHRGS--TGLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQI 60
Query: 226 LSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
           LSVNG DLR A+H++A  ALK AG+ V +  +Y  E
Sbjct: 61  LSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 96

>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine Phosphatase, Non-Receptor Type 4 Length = 119

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 177 IIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQ-TEQLYVGDAILSVNGEDLRE 235
           +IR+K  EN   G ++KGG + KMP+++S++  G  AD    +L  GD ++ +NG D+ E
Sbjct: 18  LIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAE 77
Query: 236 ATHDEAVKALK 246
            THD+ V  +K
Sbjct: 78  HTHDQVVLFIK 88

>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With The C- Terminus Of A Rabies Virus G Protein Length = 107

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 177 IIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQ-TEQLYVGDAILSVNGEDLRE 235
           +IR+K  EN   G ++KGG + KMP+++S++  G  AD    +L  GD ++ +NG D+ E
Sbjct: 20  LIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAE 79
Query: 236 ATHDEAVKALK 246
            THD+ V  +K
Sbjct: 80  HTHDQVVLFIK 90

>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine Phosphatase, Non-Receptor Type 4, Pdz Domain Length = 100

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 177 IIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQ-TEQLYVGDAILSVNGEDLRE 235
           +IR+K  EN   G ++KGG + KMP+++S++  G  AD    +L  GD ++ +NG D+ E
Sbjct: 7   LIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAE 66
Query: 236 ATHDEAVKALK 246
            THD+ V  +K
Sbjct: 67  HTHDQVVLFIK 77

>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs Large Homologue 2, Dlg2 Length = 102

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 185 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 244
           + GLG +I GG E+   I +S I  G  AD + +L  GD ILSVNG DLR A+H++A  A
Sbjct: 13  STGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAA 71
Query: 245 LKRAGKLVELEVKYLRE 261
           LK AG+ V +  +Y  E
Sbjct: 72  LKGAGQTVTIIAQYQPE 88

>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz Length = 98

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 186 NGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 244
            GLG+SI GG +  +  I+I ++++  AA +  +L+ GD IL VNG DLR+ATHDEA+  
Sbjct: 15  TGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINV 74
Query: 245 LKRAGKLVELEVKYLREVTPY 265
           L++  + V L +   R+  PY
Sbjct: 75  LRQTPQRVRLTL--YRDEAPY 93

>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2 Length = 117

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/98 (41%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 11  TEAFFFSSRDFYSENYKYTENNGLGISIKGGKENK-MP----ILISKIFKGMAADQTEQL 65
           TE  +F S     E   +    GLG SI GG  N+ +P    I ++KI  G AA +  +L
Sbjct: 15  TENLYFQSMTVV-EIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRL 73
Query: 66  YVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVG 103
            VGD +L VN   L E TH+EAV  LK   +VV L+VG
Sbjct: 74  QVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVG 111

>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2 Length = 117

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
           GLG SI GG  N+ +P    I ++KI  G AA +  +L VGD +L VN   L E TH+EA
Sbjct: 36  GLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEA 95
Query: 242 VKALKRAGKLVELEV 256
           V  LK   ++V L+V
Sbjct: 96  VAILKNTSEVVYLKV 110

>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s Length = 105

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
           GLG SI GG  N+ +P    I ++KI +G AA +  +L +GD +L+VN   L E TH+EA
Sbjct: 15  GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEA 74
Query: 242 VKALKRAGKLVELEV 256
           V ALK     V L+V
Sbjct: 75  VTALKNTSDFVYLKV 89

>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g Length = 105

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
           GLG SI GG  N+ +P    I ++KI +G AA +  +L +GD +L+VN   L E TH+EA
Sbjct: 15  GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEA 74
Query: 242 VKALKRAGKLVELEV 256
           V ALK     V L+V
Sbjct: 75  VTALKNTSDFVYLKV 89

>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain Of Human Membrane Associated Guanylate Kinase Length = 112

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 11  TEAFFFSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDA 70
           TE  +F S DFY+   +     G G S++GG+E  M + + ++ +   A+++ ++ +GD 
Sbjct: 15  TENLYFQSMDFYTVELERGAK-GFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDE 73
Query: 71  ILSVNGEDLREATHDEAVKALKRAGKVVEL 100
           IL +NGE  +   H  A++ +K  G+ V L
Sbjct: 74  ILEINGETTKNMKHSRAIELIKNGGRRVRL 103

>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain Of Human Membrane Associated Guanylate Kinase Length = 112

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 43/71 (60%)
Query: 187 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 246
           G G S++GG+E  M + + ++ +   A+++ ++ +GD IL +NGE  +   H  A++ +K
Sbjct: 36  GFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIK 95
Query: 247 RAGKLVELEVK 257
             G+ V L +K
Sbjct: 96  NGGRRVRLFLK 106

>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad- Like Protein Length = 117

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 176 RIIRVKKSENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDAIL 226
           RI+ + +  N  LGISI GG+         E    I I ++ +   A +T  L  GD IL
Sbjct: 17  RIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKIL 76
Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVKYL 259
            V+G DL+ A+H EAV+A+K AG  V   V+ L
Sbjct: 77  EVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSL 109

>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human Kiaa1526 Protein Length = 101

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Query: 176 RIIRVKKSE-NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
           R++ +++++ + GLG SI+GG E+ + I +S +  G  A++ E L VGD IL VN + L 
Sbjct: 10  RLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEK-EGLRVGDQILRVNDKSLA 68
Query: 235 EATHDEAVKALKRAGKLV 252
             TH EAVKALK + KLV
Sbjct: 69  RVTHAEAVKALKGSKKLV 86

>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway Of A Pdz Domain Length = 106

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 185 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
           + GLG SI GG  N+       I ++KI +G AA +  +L +GD +L+VN   L E TH+
Sbjct: 12  SKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHE 71
Query: 240 EAVKALKRAGKLVELEV 256
           EAV ALK     V L+V
Sbjct: 72  EAVTALKNTSDFVYLKV 88

>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In Complex With A Glur-A C-Terminal Peptide Length = 105

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
           GLG SI GG  N+ +P    I ++KI +G AA +  +L +GD +L+VN   L E TH+EA
Sbjct: 15  GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEA 74
Query: 242 VKALKRAGKLVELEV 256
           V ALK     V L+V
Sbjct: 75  VTALKNTSDFVYLKV 89

>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous Polyposis Coli Cytoskeletal Polarity Complex Length = 100

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
           GLG SI GG  N+ +P    I ++KI +G AA +  +L +GD +L+VN   L E TH+EA
Sbjct: 21  GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEA 80
Query: 242 VKALKRAGKLVELEV 256
           V ALK     V L+V
Sbjct: 81  VTALKNTSDFVYLKV 95

>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc Length = 105

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
           GLG SI GG  N+ +P    I ++KI +G AA +  +L +GD +L+VN   L E TH+EA
Sbjct: 23  GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEA 82
Query: 242 VKALKRAGKLVELEV 256
           V ALK     V L+V
Sbjct: 83  VTALKNTSDFVYLKV 97

>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18 Papillomavirus E6 Peptide Length = 97

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
           GLG SI GG  N+ +P    I ++KI +G AA +  +L +GD +L+VN   L E TH+EA
Sbjct: 11  GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEA 70
Query: 242 VKALKRAGKLVELEV 256
           V ALK     V L+V
Sbjct: 71  VTALKNTSDFVYLKV 85

>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant Protein Domain Length = 99

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
           GLG SI GG  N+       I ++KI +G AA +  +L +GD +L+VN   L E TH+EA
Sbjct: 20  GLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEA 79
Query: 242 VKALKRAGKLVELEV 256
           V ALK     V L+V
Sbjct: 80  VTALKNTSDFVYLKV 94

>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1) Length = 92

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 33  GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
           GLG+SI G K N   + +S I KG  AD   +L  GD IL VNGED+R AT +     LK
Sbjct: 17  GLGLSIVG-KRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLK 75
Query: 93  RAGKVVELEVG 103
            +   V LEVG
Sbjct: 76  CSLGTVTLEVG 86

>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1) Length = 92

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
           I ++K    GLG+SI G K N   + +S I KG  AD   +L  GD IL VNGED+R AT
Sbjct: 8   IGLQKKPGKGLGLSIVG-KRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNAT 66
Query: 238 HDEAVKALKRAGKLVELEV 256
            +     LK +   V LEV
Sbjct: 67  QEAVAALLKCSLGTVTLEV 85

>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7 Homolog B Length = 93

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 185 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 244
           + GLG +I GGKE   PI IS++  G  AD+   L  GD +LSVNG  +    H++AV+ 
Sbjct: 15  DEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVEL 74
Query: 245 LKRAGKLVELEVK 257
           LK A   V+L V+
Sbjct: 75  LKAAQGSVKLVVR 87

>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 Length = 97

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 188 LGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR 247
           LGI+I G +E   PI+IS + KG  A++T  +++GD IL++N   L+     EA+  L+ 
Sbjct: 18  LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQM 77
Query: 248 AGKLVELEVKYLREVTP 264
           AG+ V L++K   +  P
Sbjct: 78  AGETVTLKIKKQTDAQP 94

>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human Dlg3 Length = 94

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
           GLG SI GG  N+ +P    I I+KI +G AA +  +L +GD +L+VN  +L++  H+EA
Sbjct: 15  GLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEA 74
Query: 242 VKALKRAGKLVELEV 256
           V +LK    +V L+V
Sbjct: 75  VASLKNTSDMVYLKV 89

>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp Target) Length = 120

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 11  TEAFFFSSRDFYSENYKYTENNGLGISIKGGKENKM---PILISKIFKGMAADQTEQLYV 67
           TE  +F S    +   K    + LGISI GG  + +   PI I+ +     A QT++L V
Sbjct: 15  TENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRV 74
Query: 68  GDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVG 105
           GD I+++ G      TH +AV  LK A   +E++V  G
Sbjct: 75  GDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAG 112

>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp Target) Length = 120

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKM---PILISKIFKGMAADQTEQLYVGDAILSVNGED 232
           R + +KK   + LGISI GG  + +   PI I+ +     A QT++L VGD I+++ G  
Sbjct: 26  RTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTS 85
Query: 233 LREATHDEAVKALKRAGKLVELEV 256
               TH +AV  LK A   +E++V
Sbjct: 86  TEGMTHTQAVNLLKNASGSIEMQV 109

>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C- Terminal Peptide Of Hpv18 E6. Length = 84

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
           GLG SI GG  N+ +P    I ++KI +G AA +  +L +GD +L+VN   L E TH+EA
Sbjct: 10  GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEA 69
Query: 242 VKALKRAGKLVELE 255
           V ALK     V L+
Sbjct: 70  VTALKNTSDFVYLK 83

>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Scribble (Kiaa0147 Protein) Length = 105

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 170 SVENQKRIIRVKKSENNGLGISIKGGK------ENKMPILISKIFKGMAADQTEQLYVGD 223
           S  + + +  + +SE  GLG SI GGK           I +S+I +G AA +   L VGD
Sbjct: 3   SGSSGRHVACLARSER-GLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGD 61
Query: 224 AILSVNGEDLREATHDEAVKALKRAGKLVEL 254
            +LS+NG D+ EA HD AV  L  A   + L
Sbjct: 62  RVLSINGVDVTEARHDHAVSLLTAASPTIAL 92

>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g With C-Terminal Glur-A Peptide Length = 105

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
           GLG SI GG  N+ +P    I ++ I +G AA +  +L +GD +L+VN   L E TH+EA
Sbjct: 15  GLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEA 74
Query: 242 VKALKRAGKLVELEV 256
           V ALK     V L+V
Sbjct: 75  VTALKNTSDFVYLKV 89

>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1 Peptide Length = 200

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 49/82 (59%)
Query: 177 IIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 236
           ++ + K E   LG+++ GG +      +S + +G  A +++QL VGD I +VNG +L + 
Sbjct: 10  VVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKF 69
Query: 237 THDEAVKALKRAGKLVELEVKY 258
            HDE +  LK  G+ V LEV+Y
Sbjct: 70  RHDEIISLLKNVGERVVLEVEY 91

>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3 Length = 102

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/81 (44%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 26 YKYTE------NNGLGISIKGGKEN-KMP----ILISKIFKGMAADQTEQLYVGDAILSV 74
          +KY E      N+GLG SI GG +N  +P    I I+KI  G AA    +L V D +L V
Sbjct: 3  FKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRV 62
Query: 75 NGEDLREATHDEAVKALKRAG 95
          N  D+ E  H  AV+ALK AG
Sbjct: 63 NEVDVSEVVHSRAVEALKEAG 83

>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3 Length = 102

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 185 NNGLGISIKGGKEN-KMP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
           N+GLG SI GG +N  +P    I I+KI  G AA    +L V D +L VN  D+ E  H 
Sbjct: 14  NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHS 73
Query: 240 EAVKALKRAG 249
            AV+ALK AG
Sbjct: 74  RAVEALKEAG 83

>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human Membrane Associated Guanylate Kinase Inverted-2 (Kiaa0705 Protein) Length = 103

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 186 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 245
            G G SI+GG+E KM + + ++ +   A +  ++ VGD I+ +NGE  R+ TH  A++ +
Sbjct: 22  KGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELI 81
Query: 246 KRAGKLVELEVK 257
           K  G+ V L +K
Sbjct: 82  KSGGRRVRLLLK 93

>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of Postsynaptic Density-95 Length = 95

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 33  GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
           GLG SI GG  N+ +P    I ++KI +G AA +  +L +GD IL+VN   L +  H++A
Sbjct: 15  GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 74
Query: 88  VKALKRAGKVVELEVG 103
           V ALK    VV L+V 
Sbjct: 75  VAALKNTYDVVYLKVA 90

>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of Postsynaptic Density-95 Length = 95

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
           GLG SI GG  N+ +P    I ++KI +G AA +  +L +GD IL+VN   L +  H++A
Sbjct: 15  GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 74
Query: 242 VKALKRAGKLVELEV 256
           V ALK    +V L+V
Sbjct: 75  VAALKNTYDVVYLKV 89

>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz Length = 117

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 11  TEAFFFSSRDFYSENYKYTENNGLGISIKGG---KENKMPILISKIFKGMAADQTEQLYV 67
           TE  +F S             +GLG SI GG       +PI +  +F   AA +  +L  
Sbjct: 15  TENLYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKR 74
Query: 68  GDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
           GD I++VNG+ L   TH+EAV  LKR    V L V
Sbjct: 75  GDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 109

>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz Length = 117

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 186 NGLGISIKGG---KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 242
           +GLG SI GG       +PI +  +F   AA +  +L  GD I++VNG+ L   TH+EAV
Sbjct: 36  DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAV 95
Query: 243 KALKRAGKLVELEV 256
             LKR    V L V
Sbjct: 96  AILKRTKGTVTLMV 109

>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With The C-Terminal Peptide From The Bcr Protein Length = 93

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 174 QKRIIRVKKSENNGLGISI---KGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNG 230
           +  II V   + NG+G+SI   KG  ++K+ I +  + KG AAD   +L  GD +LSV+G
Sbjct: 3   EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 231 EDLREATHDEAVKALKRAGKLVELEV 256
             L   + + A + + R   +V LEV
Sbjct: 63  RSLVGLSQERAAELMTRTSSVVTLEV 88

>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6 Length = 101

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 174 QKRIIRVKKSENNGLGISI---KGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNG 230
           +  II V   + NG+G+SI   KG  ++K+ I +  + KG AAD   +L  GD +LSV+G
Sbjct: 3   EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 231 EDLREATHDEAVKALKRAGKLVELEV 256
             L   + + A + + R   +V LEV
Sbjct: 63  RSLVGLSQERAAELMTRTSSVVTLEV 88

>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain Length = 101

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 170 SVENQKRIIRVKKSENNGLGISI---KGGKENKMPILISKIFKGMAADQTEQLYVGDAIL 226
           S+  +  II V   + NG+G+SI   KG  ++K+ I +  + KG AAD   +L  GD +L
Sbjct: 5   SLRKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLL 64
Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEV 256
           SV+G  L   + + A + + R   +V LEV
Sbjct: 65  SVDGRSLVGLSQERAAELMTRTSSVVTLEV 94

>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain Containing Protein 7 Length = 100

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
           +RV+KS    LG S++GG E+ + I +SK+ +G +A++   L VGD I  VNG  L   T
Sbjct: 14  VRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERA-GLCVGDKITEVNGLSLESTT 72
Query: 238 HDEAVKALKRAGKL 251
              AVK L  + +L
Sbjct: 73  MGSAVKVLTSSSRL 86

>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The C-Terminal Peptide From Nectin-3 Length = 106

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 177 IIRVKKSENNGLGISI---KGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
           II V   + NG+G+SI   KG  ++K+ I +  + KG AAD   +L  GD +LSV+G  L
Sbjct: 12  IITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSL 71
Query: 234 REATHDEAVKALKRAGKLVELEV 256
              + + A + + R   +V LEV
Sbjct: 72  VGLSQERAAELMTRTSSVVTLEV 94

>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of Sans Length = 192

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
           +R+ +    GLG+S++GG E    + IS + KG  AD    L VGD I+ +NG  +   T
Sbjct: 88  VRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSV-GLQVGDEIVRINGYSISSCT 146
Query: 238 HDEAVKALKRAGKLVELEVKYL 259
           H+E +  L R  K V ++V+++
Sbjct: 147 HEEVIN-LIRTEKTVSIKVRHI 167

>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human Synaptojanin 2 Binding Protein Length = 120

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 187 GLGISIKGGKE-----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
           GLG +I GG +     N   I +S+I +  AA    +L  GD ILSVNG+DL+   H +A
Sbjct: 29  GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 88
Query: 242 VKALKRAGKLVELEVKYLREV 262
           V   + AG  V L V++  +V
Sbjct: 89  VDLFRNAGYAVSLRVQHRLQV 109

>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Protein Length = 102

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 187 GLGISIKGGKE-----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
           GLG +I GG +     N   I +S+I +  AA    +L  GD ILSVNG+DL+   H +A
Sbjct: 21  GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 80
Query: 242 VKALKRAGKLVELEVKY 258
           V   + AG  V L V++
Sbjct: 81  VDLFRNAGYAVSLRVQH 97

>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Protein Length = 101

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 187 GLGISIKGGKE-----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
           GLG +I GG +     N   I +S+I +  AA    +L  GD ILSVNG+DL+   H +A
Sbjct: 19  GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 78
Query: 242 VKALKRAGKLVELEVKY 258
           V   + AG  V L V++
Sbjct: 79  VDLFRNAGYAVSLRVQH 95

>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Length = 96

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 31  NNGLGISIKGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
           +N LGIS+ GG    +    I +  +    AA+   +++ GD +L+VNG  L  ATH +A
Sbjct: 15  DNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 74
Query: 88  VKALKRAGKVVEL 100
           V+ L+  G+VV L
Sbjct: 75  VETLRNTGQVVHL 87

>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Length = 96

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 177 IIRVKKSEN-NGLGISIKGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGED 232
           I  V+ ++N N LGIS+ GG    +    I +  +    AA+   +++ GD +L+VNG  
Sbjct: 6   IFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVS 65
Query: 233 LREATHDEAVKALKRAGKLVEL 254
           L  ATH +AV+ L+  G++V L
Sbjct: 66  LEGATHKQAVETLRNTGQVVHL 87

>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Complexed With A Peptide Length = 96

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 31  NNGLGISIKGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
           +N LGIS+ GG    +    I +  +    AA+   +++ GD +L+VNG  L  ATH +A
Sbjct: 15  DNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 74
Query: 88  VKALKRAGKVVEL 100
           V+ L+  G+VV L
Sbjct: 75  VETLRNTGQVVHL 87

>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Complexed With A Peptide Length = 96

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 177 IIRVKKSEN-NGLGISIKGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGED 232
           I  V+ ++N N LGIS+ GG    +    I +  +    AA+   +++ GD +L+VNG  
Sbjct: 6   IFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVS 65
Query: 233 LREATHDEAVKALKRAGKLVEL 254
           L  ATH +AV+ L+  G++V L
Sbjct: 66  LEGATHKQAVETLRNTGQVVHL 87

>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz Length = 123

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 174 QKRIIRVKKSENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDA 224
           Q R + + +  +  LGISI GG+         E    I I  + +   A +   L  GD 
Sbjct: 24  QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 83
Query: 225 ILSVNGEDLREATHDEAVKALKRAGKLVELEVKYL 259
           I+ V+G DLR+A+H++AV+A+++AG  V   V+ +
Sbjct: 84  IVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI 118

>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna 2700099c19 Length = 104

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           RI+ +KK     LG +I+GGK +++ I ISK+     A +   L  GD +L+VN  D ++
Sbjct: 17  RIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRA-GLQEGDQVLAVNDVDFQD 75
Query: 236 ATHDEAVKALKRAGKLVELEVKYL 259
             H +AV+ LK A + + + V++ 
Sbjct: 76  IEHSKAVEILKTA-REISMRVRFF 98

>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz (Mupp-1) Length = 103

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 174 QKRIIRVKKSENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDA 224
           Q R + + +  +  LGISI GG+         E    I I  + +   A +   L  GD 
Sbjct: 4   QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 63
Query: 225 ILSVNGEDLREATHDEAVKALKRAGKLVELEVKYL 259
           I+ V+G DLR+A+H++AV+A+++AG  V   V+ +
Sbjct: 64  IVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI 98

>pdb|2ADZ|A Chain A, Solution Structure Of The Joined Ph Domain Of Alpha1- Syntrophin Length = 178

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 260 REVTPYFRKASIISEVGWELQRG-FLSDXXXXXXXXXXXRADTRYLPLQLCYLVRNYKHY 318
           REV+PYF+ ++  + VGW+      L              ++ +++ L++ Y+ R     
Sbjct: 78  REVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPGPQPRNLSEAKHVSLKMAYVSRRCTPT 137
Query: 319 DSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTL 357
           D E R LE+ + DG  +  LRA D + A  W   + + +
Sbjct: 138 DPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQI 176

>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein) Length = 114

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 174 QKRIIRVKKSENNGLGISI-------KGGKENKMPILISKIFKGMAADQTEQLYVGDAIL 226
           Q   + + + EN G G  I       + G    +P  I +I  G  AD+  +L VGD IL
Sbjct: 10  QTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRIL 69
Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEV 256
           +VNG+ +    H + VK +K AG  V L +
Sbjct: 70  AVNGQSIINMPHADIVKLIKDAGLSVTLRI 99

>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Kiaa1526 Protein Length = 103

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 177 IIRVKKSENNGLGISIKGGKENKMPI-LISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           ++RVKKS    LGI+I+GG   + P+  I  I +G +A    QL VG  IL VNG  LR 
Sbjct: 9   LVRVKKSAAT-LGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRG 67
Query: 236 ATHDEAVKALKRAGK 250
             H EA + +  A K
Sbjct: 68  KEHREAARIIAEAFK 82

>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse Tjp2 Length = 117

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 178 IRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGE 231
           + ++K    G GI++ GG++N      +  I+IS +  G  AD    L   D ++ VNG 
Sbjct: 18  VTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADGL--LQENDRVVMVNGT 75
Query: 232 DLREATHDEAVKALKRAGKLVELEVKYLREV 262
            + +  H  AV+ L+++GK+  + VK  R+V
Sbjct: 76  PMEDVLHSFAVQQLRKSGKIAAIVVKRPRKV 106

>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble Homolog Protein (Hscrib) Length = 110

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMP-------ILISKIFKGMAADQTEQLY 220
           P  +E ++  + + + +  GLGISI GGK    P       I IS++ +   A +   + 
Sbjct: 9   PARIEEEELTLTILR-QTGGLGISIAGGK-GSTPYKGDDEGIFISRVSEEGPAARA-GVR 65
Query: 221 VGDAILSVNGEDLREATHDEAVKALKRAGKLVELEV 256
           VGD +L VNG  L+ A H EAV+AL+ AG  V++ V
Sbjct: 66  VGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 101

>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand From The Apc Protein Length = 102

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 31  NNGLGISIKGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
           +  LGIS+ GG    +    I +  I    AA+   +++ GD +L+VNG  L  ATH +A
Sbjct: 22  DGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 81
Query: 88  VKALKRAGKVVEL 100
           V+ L+  G+VV L
Sbjct: 82  VETLRNTGQVVHL 94

>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand From The Apc Protein Length = 102

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 185 NNGLGISIKGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
           +  LGIS+ GG    +    I +  I    AA+   +++ GD +L+VNG  L  ATH +A
Sbjct: 22  DGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 81
Query: 242 VKALKRAGKLVEL 254
           V+ L+  G++V L
Sbjct: 82  VETLRNTGQVVHL 94

>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 31  NNGLGISIKGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
           +  LGIS+ GG    +    I +  I    AA+   +++ GD +L+VNG  L  ATH +A
Sbjct: 14  DGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 73
Query: 88  VKALKRAGKVVEL 100
           V+ L+  G+VV L
Sbjct: 74  VETLRNTGQVVHL 86

>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 185 NNGLGISIKGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
           +  LGIS+ GG    +    I +  I    AA+   +++ GD +L+VNG  L  ATH +A
Sbjct: 14  DGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 73
Query: 242 VKALKRAGKLVEL 254
           V+ L+  G++V L
Sbjct: 74  VETLRNTGQVVHL 86

>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1 Length = 97

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 184 ENNGLGISIKGGKENKMP-------ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 236
           +  GLGISI GGK    P       I IS++ +   A +   + VGD +L VNG  L+ A
Sbjct: 12  QTGGLGISIAGGK-GSTPYKGDDEGIFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGA 69
Query: 237 THDEAVKALKRAGKLVELEVKYLREVT 263
            H EAV+AL+ AG  V++ V   RE +
Sbjct: 70  EHHEAVEALRGAGTAVQMRVWRERETS 96

>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Kiaa1526 Protein Length = 128

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 188 LGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR 247
           LG++I+GG E  + I I+ +  G  A+ +  L VGD IL VNG       HDEAV+ LK 
Sbjct: 34  LGLTIRGGAEYGLGIYITGVDPGSEAEGS-GLKVGDQILEVNGRSFLNILHDEAVRLLKS 92
Query: 248 AGKLVELEVKYLREVTPYFRKASIISEVGW 277
           +  L+ L VK +  + P+ R  + + E  W
Sbjct: 93  SRHLI-LTVKDVGRL-PHAR--TTVDETKW 118

>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human Interleukin- 16 Length = 119

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 180 VKKSENNGLGISIKGGK--ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
           + K E  GLG S+ GG   ENK+ I + ++F    A Q   +  G+ +LS+NG+ L+  T
Sbjct: 21  LHKEEGAGLGFSLAGGADLENKV-ITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTT 79
Query: 238 HDEAVKALKRAGKLVELEVKYLREVTP 264
           H +A+  L++A +     V   R++TP
Sbjct: 80  HHDALAILRQA-REPRQAVIVTRKLTP 105

>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor Interacting Protein-1 (Grip1) Length = 97

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 184 ENNGLGISIKGG----KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
           E N  G  I+GG    +    P++I+ +  G  AD+   +  GD +LSV+G  L   TH 
Sbjct: 12  EGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHA 71
Query: 240 EAVKALKRAGKLVELEVKY 258
           EA+  LK+ G+   L ++Y
Sbjct: 72  EAMSILKQCGQEAALLIEY 90

>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human Homolog Of Discs Large Protein Length = 99

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
           D +  + R + + +  + GLG +I GG E+   I IS I  G  AD + +L  GD I+SV
Sbjct: 2   DEITREPRKVVLHRG-STGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDRIISV 59
Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
           N  DLR A+H++A  ALK AG+ V +  +Y  E
Sbjct: 60  NSVDLRAASHEQAAAALKNAGQAVTIVAQYRPE 92

>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide Synthase Pdz Domain Complexed With An Associated Peptide Length = 127

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
           +R+ K +  GLG  +K  + +K P++IS + +G AA+Q+  +  GD IL+VN   L + +
Sbjct: 12  VRLFKRKVGGLGFLVKE-RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS 70
Query: 238 HDEAVKALK 246
           +D A++ L+
Sbjct: 71  YDSALEVLR 79

>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By Structure Of Nnos-Syntrophin Complex Length = 115

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
           +R+ K +  GLG  +K  + +K P++IS + +G AA+Q+  +  GD IL+VN   L + +
Sbjct: 7   VRLFKRKVGGLGFLVKE-RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS 65
Query: 238 HDEAVKALK 246
           +D A++ L+
Sbjct: 66  YDSALEVLR 74

>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By Structure Of Nnos-Syntrophin Complex Length = 112

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
           +R+ K +  GLG  +K  + +K P++IS + +G AA+Q+  +  GD IL+VN   L + +
Sbjct: 5   VRLFKRKVGGLGFLVKE-RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS 63
Query: 238 HDEAVKALK 246
           +D A++ L+
Sbjct: 64  YDSALEVLR 72

>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human Cdna, Kiaa1095 Length = 107

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 28  YTENNGLGISIKGGK--------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 79
           + ++  LG +I GG+         +   I +SKI     A +   L + D I+ VNG DL
Sbjct: 15  HRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDL 74
Query: 80  REATHDEAVKALKRAGKVVELEV 102
             ATHD+AV+A K A + + ++V
Sbjct: 75  SRATHDQAVEAFKTAKEPIVVQV 97

>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human Cdna, Kiaa1095 Length = 107

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 184 ENNGLGISIKGGK--------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           ++  LG +I GG+         +   I +SKI     A +   L + D I+ VNG DL  
Sbjct: 17  DSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSR 76
Query: 236 ATHDEAVKALKRAGKLVELEV 256
           ATHD+AV+A K A + + ++V
Sbjct: 77  ATHDQAVEAFKTAKEPIVVQV 97

>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2 Domain (Pdz2b) Of Ptp-Bas (Hptp1e) Length = 108

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 31  NNGLGISI-----KGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 82
           +N LGIS+     KGG    +    I +  +    AA+   +++ GD +L+VNG  L  A
Sbjct: 19  DNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGA 78
Query: 83  THDEAVKALKRAGKVVEL 100
           TH +AV+ L+  G+VV L
Sbjct: 79  THKQAVETLRNTGQVVHL 96

>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2 Domain (Pdz2b) Of Ptp-Bas (Hptp1e) Length = 108

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 177 IIRVKKSEN-NGLGISI-----KGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILS 227
           I  V+ ++N N LGIS+     KGG    +    I +  +    AA+   +++ GD +L+
Sbjct: 10  IFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLA 69
Query: 228 VNGEDLREATHDEAVKALKRAGKLVEL 254
           VNG  L  ATH +AV+ L+  G++V L
Sbjct: 70  VNGVSLEGATHKQAVETLRNTGQVVHL 96

>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function, Nmr, 20 Structures Length = 130

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 33  GLGISIKGGK---ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
           GLG S++GGK       P+ I++IFKG A++Q+E +  GD IL + G  ++  T  EA  
Sbjct: 41  GLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWN 100
Query: 90  ALK 92
            +K
Sbjct: 101 IIK 103

>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function, Nmr, 20 Structures Length = 130

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 187 GLGISIKGGK---ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 243
           GLG S++GGK       P+ I++IFKG A++Q+E +  GD IL + G  ++  T  EA  
Sbjct: 41  GLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWN 100
Query: 244 ALK 246
            +K
Sbjct: 101 IIK 103

>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve-Cadherin C-Terminus Length = 111

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 33 GLGISIKGG--KENK--MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
          GLG+S+KG   KEN   + I +  I  G AA +  +L V D +++VNGE L    + EA+
Sbjct: 22 GLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAM 81
Query: 89 KALKRA 94
          + L+R+
Sbjct: 82 ETLRRS 87

>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve-Cadherin C-Terminus Length = 111

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 187 GLGISIKGG--KENK--MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 242
           GLG+S+KG   KEN   + I +  I  G AA +  +L V D +++VNGE L    + EA+
Sbjct: 22  GLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAM 81
Query: 243 KALKRA 248
           + L+R+
Sbjct: 82  ETLRRS 87

>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin Protein Length = 114

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
           P + EN+++ + +    + GLG SI  G   K  I IS +  G  + +   L +GD I+ 
Sbjct: 9   PGNRENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEV-GLEIGDQIVE 67
Query: 228 VNGEDLREATHDEAVKALKRAGKL 251
           VNG D     H EAV  LK +  L
Sbjct: 68  VNGVDFSNLDHKEAVNVLKSSRSL 91

>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3 Length = 104

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 33 GLGISIKGG--KENK--MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
          GLG+S+KG   KEN   + I +  I  G AA +  +L V D +++VNGE L    + EA+
Sbjct: 19 GLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAM 78
Query: 89 KALKRA 94
          + L+R+
Sbjct: 79 ETLRRS 84

>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3 Length = 104

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 187 GLGISIKGG--KENK--MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 242
           GLG+S+KG   KEN   + I +  I  G AA +  +L V D +++VNGE L    + EA+
Sbjct: 19  GLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAM 78
Query: 243 KALKRA 248
           + L+R+
Sbjct: 79  ETLRRS 84

>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C- Terminal Peptide Of Hpv18 E6 Length = 85

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 31  NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
           + GLG +I GG++ +  I IS I  G  AD + +L  GD I+SVN  DLR A+H++A  A
Sbjct: 14  STGLGFNIVGGEDGE-GIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAA 72
Query: 91  LKRAGKVVEL 100
           LK AG+ V +
Sbjct: 73  LKNAGQAVTI 82

>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C- Terminal Peptide Of Hpv18 E6 Length = 85

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 185 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 244
           + GLG +I GG++ +  I IS I  G  AD + +L  GD I+SVN  DLR A+H++A  A
Sbjct: 14  STGLGFNIVGGEDGE-GIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAA 72
Query: 245 LKRAGKLVEL 254
           LK AG+ V +
Sbjct: 73  LKNAGQAVTI 82

>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human Ligand-of-numb Protein-x (lnx1) In Complex With The C-terminal Peptide From The Coxsackievirus And Adenovirus Receptor Length = 118

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKENK---MPILISKIFKGMAADQTEQLYVGDAILSVNG 230
            ++++ ++K     LG+++ GG  ++   +PI +  +  G    +  ++  GD +L+V+G
Sbjct: 24  HEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDG 83
Query: 231 EDLREATHDEAVKALKRAGKLVELEVKYLRE 261
            +L E +  EAV  LKR    + L+   ++E
Sbjct: 84  VELTEVSRSEAVALLKRTSSSIVLKALEVKE 114

>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl Length = 99

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 31  NNGLGISI-----KGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 82
           +  LGIS+     KGG    +    I +  I    AA+   +++ GD +L+VNG  L  A
Sbjct: 14  DGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGA 73
Query: 83  THDEAVKALKRAGKVVEL 100
           TH +AV+ L+  G+VV L
Sbjct: 74  THKQAVETLRNTGQVVHL 91

>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl Length = 99

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 185 NNGLGISI-----KGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 236
           +  LGIS+     KGG    +    I +  I    AA+   +++ GD +L+VNG  L  A
Sbjct: 14  DGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGA 73
Query: 237 THDEAVKALKRAGKLVEL 254
           TH +AV+ L+  G++V L
Sbjct: 74  THKQAVETLRNTGQVVHL 91

>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of Tandem Pdz Domains In Glutamate Receptor Interacting Proteins Length = 196

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 96/229 (41%), Gaps = 59/229 (25%)
Query: 33  GLGISIKGG----KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
           G GI ++G     +    P LIS I     A++   L +GD ++++NG    ++T +EA 
Sbjct: 19  GFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEAN 78
Query: 89  KALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNG 148
           + L+ +    +                                  +TL+  +D       
Sbjct: 79  QLLRDSSITSK----------------------------------VTLEIEFD------- 97
Query: 149 TLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIF 208
            +  + + S  +F   V +P            K S   G+ IS    ++   P++IS I 
Sbjct: 98  -VAESVIPSSGTFH--VKLPK-----------KHSVELGITISSPSSRKPGDPLVISDIK 143
Query: 209 KGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK 257
           KG  A +T  L +GD +L+++   L   + ++AV+ L++   LV+L+++
Sbjct: 144 KGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIR 192

>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed Protein Product Length = 104

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 187 GLGISIKGGKE--NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 244
           G G+++ GG++     P+ +  + K   A +  +L VGD +L +NGE  +  TH +AV+ 
Sbjct: 23  GFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVER 82
Query: 245 LKRAGKLVELEVK 257
           ++  G  + L ++
Sbjct: 83  IRAGGPQLHLVIR 95

>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In Complex With A Norpa C-Terminal Peptide Length = 98

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 177 IIRVKKSENNGLGISIKGGKENKMP------ILISKIFKGMAADQTEQLYVGDAILSVNG 230
           ++ + K+     GI I  G+    P      I I  I     A    +L VGD ILS+NG
Sbjct: 8   MVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNG 67
Query: 231 EDLREATHDEAVKALKRAGKLVELEVK 257
           +D+R +T    +  +K A   +ELE++
Sbjct: 68  KDVRNSTEQAVIDLIKEADFKIELEIQ 94

>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852 Length = 127

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 178 IRVKKSENNGLGISIKGGKENK----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
           I +  S + GLG+S+KG K  +    + I I  I  G AA +  +L + D +++VNGE L
Sbjct: 29  IPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETL 88
Query: 234 REATHDEAVKALKRA 248
              ++ EA++ L+R+
Sbjct: 89  LGKSNHEAMETLRRS 103

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	774
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	3e-61
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	6e-24
2adz_A	178	Alpha-1-syntrophin; protein binding; NMR {Mus musc	1e-56
2adz_A	178	Alpha-1-syntrophin; protein binding; NMR {Mus musc	2e-08
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	2e-44
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	1e-31
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	5e-38
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	2e-32
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	2e-37
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	3e-26
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	1e-36
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	1e-31
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	4e-35
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	1e-31
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	1e-34
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	3e-28
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	2e-34
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	4e-25
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	3e-34
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	5e-30
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	1e-33
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	2e-30
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	1e-33
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	2e-28
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	3e-33
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	2e-31
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	3e-33
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	2e-28
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	4e-33
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	3e-16
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	4e-15
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	8e-33
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	5e-27
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	8e-33
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	1e-27
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	8e-33
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	4e-28
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	2e-32
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	4e-27
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	2e-32
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	1e-28
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	4e-32
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-28
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	4e-32
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-28
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	7e-32
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	4e-30
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	1e-31
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	6e-29
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	2e-31
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	6e-29
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	2e-31
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	9e-31
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	2e-31
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	3e-25
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	2e-31
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	9e-29
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	3e-31
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	4e-26
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	3e-31
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	6e-26
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	4e-31
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	1e-25
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	5e-31
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	5e-26
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	5e-31
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	6e-28
2opg_A	98	Multiple PDZ domain protein; structural protein, s	6e-31
2opg_A	98	Multiple PDZ domain protein; structural protein, s	1e-28
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	7e-31
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	7e-29
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	8e-31
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	7e-28
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	1e-30
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	6e-27
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	1e-30
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	4e-27
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	2e-30
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	6e-29
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	2e-30
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	1e-28
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	3e-30
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	1e-28
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	3e-30
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	2e-26
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	5e-30
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	1e-28
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	5e-30
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	2e-27
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	6e-30
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	4e-26
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	7e-30
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	4e-27
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	8e-30
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	2e-25
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	1e-29
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	2e-28
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	1e-29
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	1e-26
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	2e-29
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	4e-27
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	2e-29
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	3e-28
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	2e-29
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	2e-27
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	3e-29
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	8e-26
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	5e-29
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	3e-27
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	5e-29
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	9e-28
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	5e-29
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	4e-27
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	1e-28
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	3e-27
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	3e-28
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	3e-26
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	4e-28
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	3e-26
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	5e-28
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	2e-24
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	5e-28
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	1e-27
2awx_A	105	Synapse associated protein 97; membrane protein, s	6e-28
2awx_A	105	Synapse associated protein 97; membrane protein, s	9e-27
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	8e-28
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	2e-26
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	1e-27
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	1e-24
2fne_A	117	Multiple PDZ domain protein; structural protein, s	2e-27
2fne_A	117	Multiple PDZ domain protein; structural protein, s	1e-24
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	2e-27
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	2e-24
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	3e-27
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	4e-25
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	4e-27
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	8e-25
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	1e-26
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	1e-24
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	1e-26
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	1e-24
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	2e-26
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	1e-24
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	2e-26
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	2e-24
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	3e-26
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	4e-26
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	3e-26
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	6e-23
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	6e-26
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	7e-25
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	7e-26
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	1e-22
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	7e-26
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	5e-23
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	9e-26
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	3e-24
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-25
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-25
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	2e-25
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	1e-24
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	3e-25
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	7e-23
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	3e-25
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	2e-23
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	4e-25
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	6e-24
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	7e-25
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	4e-23
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	8e-25
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	1e-21
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	1e-24
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	6e-23
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	1e-24
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	2e-23
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	1e-24
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	7e-20
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	1e-24
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	6e-23
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	1e-24
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	2e-24
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	2e-24
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	2e-24
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	3e-24
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	8e-22
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	5e-24
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	1e-22
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	6e-24
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	9e-23
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	9e-24
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	3e-22
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	1e-23
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	3e-23
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	2e-23
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	1e-22
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	3e-23
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	1e-22
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	3e-23
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	3e-21
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	1e-20
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	1e-20
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	5e-23
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	4e-22
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	8e-23
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	3e-19
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	1e-22
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	2e-22
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	2e-22
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	6e-22
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	3e-22
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	7e-20
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	9e-17
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	2e-15
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	3e-22
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	1e-20
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	4e-22
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	8e-19
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	4e-22
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	1e-21
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	3e-21
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	4e-20
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	5e-21
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	5e-21
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	5e-21
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	8e-21
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	2e-20
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	3e-20
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	2e-20
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	2e-17
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	3e-20
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	6e-17
2d90_A	102	PDZ domain containing protein 1; structural genomi	4e-20
2d90_A	102	PDZ domain containing protein 1; structural genomi	4e-17
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	5e-20
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	1e-16
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	8e-20
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	8e-19
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	9e-20
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	1e-19
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	1e-19
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	8e-17
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	1e-19
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	3e-19
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	2e-19
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	4e-17
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	3e-19
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	8e-19
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	6e-19
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	1e-17
2ego_A	96	General receptor for phosphoinositides 1- associat	8e-19
2ego_A	96	General receptor for phosphoinositides 1- associat	2e-15
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	1e-18
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	4e-16
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	2e-18
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	8e-15
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	2e-18
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	6e-16
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	3e-18
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	1e-17
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	3e-18
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	4e-17
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	3e-18
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	2e-14
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	2e-07
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	3e-06
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	4e-18
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	2e-17
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	6e-18
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	6e-17
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	7e-18
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	2e-16
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	1e-17
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	3e-15
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	1e-17
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	5e-17
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	2e-17
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	3e-16
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	2e-17
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	4e-16
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	2e-17
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	1e-14
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	3e-17
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	7e-16
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	6e-17
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	2e-15
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	7e-17
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	3e-15
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	1e-16
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	5e-15
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	2e-16
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	3e-14
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	3e-16
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	6e-16
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	3e-16
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	1e-14
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	3e-16
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	8e-13
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	6e-16
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	8e-14
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	7e-16
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	1e-13
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	2e-15
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	2e-13
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	5e-15
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	3e-14
3khf_A	99	Microtubule-associated serine/threonine-protein ki	1e-14
3khf_A	99	Microtubule-associated serine/threonine-protein ki	9e-14
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	2e-14
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	1e-12
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	7e-14
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	4e-13
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	9e-14
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	3e-12
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	1e-13
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	1e-13
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	2e-13
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	8e-13
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	2e-12
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	1e-11
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	4e-13
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	3e-12
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	2e-11
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	9e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	1e-08
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	6e-08
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	4e-08
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	8e-07
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	7e-08
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	3e-07
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	1e-04
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	4e-04
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	6e-04

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score =  206 bits (524), Expect = 3e-61
 Identities = 108/258 (41%), Positives = 154/258 (59%), Gaps = 12/258 (4%)

Query: 108 RCGTLETYVRG-------QWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISS 160
           R G LE            +W +V +SL ED ++++  +           LN       + 
Sbjct: 8   RTGLLELRCGAGSGAGGERWQRVLLSLAEDALTVSPADGEPGPEPEPAQLNGAAEPGAAP 67

Query: 161 FMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLY 220
                 +P+++  Q+R + V+K++  GLGISIKGG+ENKMPILISKIFKG+AADQTE L+
Sbjct: 68  ----PQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALF 123

Query: 221 VGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWE-L 279
           VGDAILSVNGEDL  ATHDEAV+ALK+ GK V LEVKY++EV+PYF+ ++  + VGW+  
Sbjct: 124 VGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVGWDSP 183

Query: 280 QRGFLSDSPPSPSPQSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILR 339
               L   P SP PQ    ++ +++ L++ Y+ R     D E R LE+ + DG  +  LR
Sbjct: 184 PASPLQRQPSSPGPQPRNLSEAKHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLR 243

Query: 340 ASDASEASLWFNTLHSTL 357
           A D + A  W   + + +
Sbjct: 244 AKDEASARSWAGAIQAQI 261

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score =  100 bits (251), Expect = 6e-24
 Identities = 56/70 (80%), Positives = 62/70 (88%)

Query: 29  TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
            +  GLGISIKGG+ENKMPILISKIFKG+AADQTE L+VGDAILSVNGEDL  ATHDEAV
Sbjct: 86  ADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAV 145

Query: 89  KALKRAGKVV 98
           +ALK+ GK V
Sbjct: 146 QALKKTGKEV 155

>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1 Length = 178

 Score =  190 bits (484), Expect = 1e-56
 Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 10/174 (5%)

Query: 194 GGKENKMPILISKIFKGMAADQTEQLYV----GDAILSVNGEDLREATHDEAVKAL---- 245
           G +  +  +L  +   G  A       V     +  L+V+  D       E  +      
Sbjct: 3   GRRAPRTGLLELRCGAGSGAGGERWQRVLLSLAEDALTVSPADGEPGPEPEPAQLNGAAE 62

Query: 246 -KRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGF-LSDSPPSPSPQSSQRADTRY 303
              A   +   +   REV+PYF+ ++  + VGW+      L   P SP PQ    ++ ++
Sbjct: 63  PGAAPPQLPEALLLQREVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPGPQPRNLSEAKH 122

Query: 304 LPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTL 357
           + L++ Y+ R     D E R LE+ + DG  +  LRA D + A  W   + + +
Sbjct: 123 VSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQI 176

>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1 Length = 178

 Score = 53.7 bits (128), Expect = 2e-08
 Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 9/72 (12%)

Query: 40  GGKENKMPILISKIFKGMAADQTEQLYV----GDAILSVNGEDLREATHDEAVKAL---- 91
           G +  +  +L  +   G  A       V     +  L+V+  D       E  +      
Sbjct: 3   GRRAPRTGLLELRCGAGSGAGGERWQRVLLSLAEDALTVSPADGEPGPEPEPAQLNGAAE 62

Query: 92  -KRAGKVVELEV 102
              A   +   +
Sbjct: 63  PGAAPPQLPEAL 74

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score =  157 bits (399), Expect = 2e-44
 Identities = 53/233 (22%), Positives = 86/233 (36%), Gaps = 52/233 (22%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
           E   LG+++ GG +      +S + +G  A +++QL VGD I +VNG +L +  HDE + 
Sbjct: 17  EGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIIS 76

Query: 90  ALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGT 149
            LK  G+ V LEV           + V  +  +V +  E +     +     +       
Sbjct: 77  LLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNTFGFVIRGGAHD------- 129

Query: 150 LNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFK 209
                                              N    + I              +  
Sbjct: 130 ---------------------------------DRNKSRPVVIT------------CVRP 144

Query: 210 GMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREV 262
           G  AD+   +  GD +LSV+G  L   TH EA+  LK+ G+   L ++Y   V
Sbjct: 145 GGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVSV 197

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score =  121 bits (305), Expect = 1e-31
 Identities = 32/114 (28%), Positives = 54/114 (47%)

Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
                   ++ + K E   LG+++ GG +      +S + +G  A +++QL VGD I +V
Sbjct: 2   PGSFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAV 61

Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRG 282
           NG +L +  HDE +  LK  G+ V LEV+Y          + +   V   L + 
Sbjct: 62  NGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKE 115

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score =  135 bits (342), Expect = 5e-38
 Identities = 65/89 (73%), Positives = 77/89 (86%)

Query: 172 ENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGE 231
             Q+R + V+K++  GLGISIKGG+ENKMPILISKIFKG+AADQTE L+VGDAILSVNGE
Sbjct: 2   SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGE 61

Query: 232 DLREATHDEAVKALKRAGKLVELEVKYLR 260
           DL  ATHDEAV+ALK+ GK V LEVKY++
Sbjct: 62  DLSSATHDEAVQALKKTGKEVVLEVKYMK 90

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score =  119 bits (301), Expect = 2e-32
 Identities = 59/74 (79%), Positives = 65/74 (87%)

Query: 29  TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
            +  GLGISIKGG+ENKMPILISKIFKG+AADQTE L+VGDAILSVNGEDL  ATHDEAV
Sbjct: 13  ADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAV 72

Query: 89  KALKRAGKVVELEV 102
           +ALK+ GK V LEV
Sbjct: 73  QALKKTGKEVVLEV 86

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score =  137 bits (347), Expect = 2e-37
 Identities = 41/237 (17%), Positives = 84/237 (35%), Gaps = 61/237 (25%)

Query: 30  ENNGLGISIKGGKEN----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
              G GI ++G          P LIS I     A++   L +GD ++++NG    ++T +
Sbjct: 16  PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFE 75

Query: 86  EAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDY-ISITLDENYDNST 144
           EA + L+ +    ++ + + +    ++         K+      +  I+I          
Sbjct: 76  EANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITI---------- 125

Query: 145 VLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILI 204
                                                 S   G  + I            
Sbjct: 126 ----------------------------------SSPSSRKPGDPLVIS----------- 140

Query: 205 SKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
             I KG  A +T  L +GD +L+++   L   + ++AV+ L++   LV+L+++   +
Sbjct: 141 -DIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDED 196

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score =  106 bits (265), Expect = 3e-26
 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 171 VENQKRIIRVKKSENNGLGISIKGGKEN----KMPILISKIFKGMAADQTEQLYVGDAIL 226
           V  +   + +      G GI ++G          P LIS I     A++   L +GD ++
Sbjct: 3   VHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVM 62

Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEV 275
           ++NG    ++T +EA + L+ +    ++ ++   +V      +S    V
Sbjct: 63  AINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHV 111

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score =  132 bits (334), Expect = 1e-36
 Identities = 43/101 (42%), Positives = 62/101 (61%)

Query: 159 SSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQ 218
           S  ++   + +      R + + K ++ GLGISI GGKE+ +PILIS+I  G  AD+   
Sbjct: 12  SGHIEGRHMENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGG 71

Query: 219 LYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYL 259
           L+VGDAIL+VNG +LR+  H EAV  L +    +E EV Y+
Sbjct: 72  LHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYV 112

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score =  117 bits (296), Expect = 1e-31
 Identities = 39/73 (53%), Positives = 51/73 (69%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
           ++ GLGISI GGKE+ +PILIS+I  G  AD+   L+VGDAIL+VNG +LR+  H EAV 
Sbjct: 37  DHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVT 96

Query: 90  ALKRAGKVVELEV 102
            L +    +E EV
Sbjct: 97  ILSQQRGEIEFEV 109

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score =  127 bits (322), Expect = 4e-35
 Identities = 42/86 (48%), Positives = 57/86 (66%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           R + + K ++ GLGISI GGKE+ +PILIS+I  G  AD+   L+VGDAIL+VNG +LR+
Sbjct: 11  RKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRD 70

Query: 236 ATHDEAVKALKRAGKLVELEVKYLRE 261
             H EAV  L +    +E EV Y+  
Sbjct: 71  TKHKEAVTILSQQRGEIEFEVVYVAL 96

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score =  117 bits (296), Expect = 1e-31
 Identities = 39/74 (52%), Positives = 51/74 (68%)

Query: 29  TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
            ++ GLGISI GGKE+ +PILIS+I  G  AD+   L+VGDAIL+VNG +LR+  H EAV
Sbjct: 18  EDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAV 77

Query: 89  KALKRAGKVVELEV 102
             L +    +E EV
Sbjct: 78  TILSQQRGEIEFEV 91

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score =  126 bits (319), Expect = 1e-34
 Identities = 42/108 (38%), Positives = 59/108 (54%), Gaps = 2/108 (1%)

Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
           + +  + R I + +  + GLG +I GG E+   I IS I  G  AD + +L  GD ILSV
Sbjct: 9   EDIPREPRRIVIHR-GSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSV 66

Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVG 276
           NG DLR A+H++A  ALK AG+ V +  +Y  E    F   S +   G
Sbjct: 67  NGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDSSG 114

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score =  108 bits (272), Expect = 3e-28
 Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
            + GLG +I GG E+   I IS I  G  AD + +L  GD ILSVNG DLR A+H++A  
Sbjct: 23  GSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAI 81

Query: 90  ALKRAGKVVELEV 102
           ALK AG+ V +  
Sbjct: 82  ALKNAGQTVTIIA 94

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score =  129 bits (325), Expect = 2e-34
 Identities = 45/214 (21%), Positives = 83/214 (38%), Gaps = 34/214 (15%)

Query: 74  VNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYIS 133
           V+     +A  D     L+   + +++ V VG      L+  +               I 
Sbjct: 13  VDFLIENDAEKDYLYDVLRMYHQTMDVAVLVG-----DLKLVINEPSRLPLFDAIRPLIP 67

Query: 134 ITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIK 193
           +     YD  T                             + + +R+ +    GLG+S++
Sbjct: 68  LKHQVEYDQLTPRRS------------------------RKLKEVRLDRLHPEGLGLSVR 103

Query: 194 GGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE 253
           GG E    + IS + KG  AD    L VGD I+ +NG  +   TH+E +  ++   K V 
Sbjct: 104 GGLEFGCGLFISHLIKGGQADSV-GLQVGDEIVRINGYSISSCTHEEVINLIR-TEKTVS 161

Query: 254 LEVKYLREVTPYFRKASIISEVGWELQRGFLSDS 287
           ++V+++  +     K+S    + W+    F+S+S
Sbjct: 162 IKVRHIGLIPV---KSSPDEPLTWQYVDQFVSES 192

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score =  102 bits (255), Expect = 4e-25
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 29  TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
               GLG+S++GG E    + IS + KG  AD    L VGD I+ +NG  +   TH+E +
Sbjct: 93  LHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSV-GLQVGDEIVRINGYSISSCTHEEVI 151

Query: 89  KALKRAGKVVELEV 102
             ++   K V ++V
Sbjct: 152 NLIR-TEKTVSIKV 164

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score =  126 bits (318), Expect = 3e-34
 Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 18/128 (14%)

Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVN 229
            +      + ++K   N +GISI GG +    + I ++F    A     +  GD I  VN
Sbjct: 15  GIPTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVN 74

Query: 230 GEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDSPP 289
           G  ++  T  E  K ++     V +    L+                       L     
Sbjct: 75  GRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPK------------------QLEVLFN 116

Query: 290 SPSPQSSQ 297
            P  +S +
Sbjct: 117 GPGIESVK 124

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score =  114 bits (286), Expect = 5e-30
 Identities = 20/73 (27%), Positives = 31/73 (42%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
             N +GISI GG +    + I ++F    A     +  GD I  VNG  ++  T  E  K
Sbjct: 29  AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAK 88

Query: 90  ALKRAGKVVELEV 102
            ++     V +  
Sbjct: 89  MIQEVKGEVTIHY 101

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score =  123 bits (311), Expect = 1e-33
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVN 229
           S       + +K+     LGI+I G +E   PI+IS + KG  A++T  +++GD IL++N
Sbjct: 1   SSGAIIYTVELKR-YGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAIN 59

Query: 230 GEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
              L+     EA+  L+ AG+ V L++K   +  P
Sbjct: 60  SSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP 94

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score =  114 bits (287), Expect = 2e-30
 Identities = 27/73 (36%), Positives = 44/73 (60%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
               LGI+I G +E   PI+IS + KG  A++T  +++GD IL++N   L+     EA+ 
Sbjct: 14  YGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIH 73

Query: 90  ALKRAGKVVELEV 102
            L+ AG+ V L++
Sbjct: 74  LLQMAGETVTLKI 86

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score =  123 bits (311), Expect = 1e-33
 Identities = 39/98 (39%), Positives = 55/98 (56%), Gaps = 2/98 (2%)

Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
           + +  + R I + +  + GLG +I GG+     I IS I  G  AD + +L  GD ILSV
Sbjct: 6   EDIPREPRRIVIHR-GSTGLGFNIVGGEXG-EGIFISFILAGGPADLSGELRKGDQILSV 63

Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYF 266
           NG DLR A+H++A  ALK AG+ V +  +Y  E    F
Sbjct: 64  NGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRF 101

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score =  108 bits (273), Expect = 2e-28
 Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
            + GLG +I GG+     I IS I  G  AD + +L  GD ILSVNG DLR A+H++A  
Sbjct: 20  GSTGLGFNIVGGEXG-EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAI 78

Query: 90  ALKRAGKVVELEV 102
           ALK AG+ V +  
Sbjct: 79  ALKNAGQTVTIIA 91

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score =  121 bits (307), Expect = 3e-33
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
              ++ + K  + GLG +I GGKE   PI IS++  G  AD+   L  GD +LSVNG  +
Sbjct: 5   SSGVVELPK-TDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 63

Query: 234 REATHDEAVKALKRAGKLVELEVKY 258
               H++AV+ LK A   V+L V+ 
Sbjct: 64  EGEQHEKAVELLKAAQGSVKLVVRS 88

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score =  116 bits (294), Expect = 2e-31
 Identities = 32/73 (43%), Positives = 43/73 (58%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
            + GLG +I GGKE   PI IS++  G  AD+   L  GD +LSVNG  +    H++AV+
Sbjct: 14  TDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVE 73

Query: 90  ALKRAGKVVELEV 102
            LK A   V+L V
Sbjct: 74  LLKAAQGSVKLVV 86

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score =  122 bits (309), Expect = 3e-33
 Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 3/108 (2%)

Query: 159 SSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGK---ENKMPILISKIFKGMAADQ 215
           S      +        ++++ ++K     LG+++ GG    E  +PI +  +  G    +
Sbjct: 9   SGVDLGTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISR 68

Query: 216 TEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263
             ++  GD +L+V+G +L E +  EAV  LKR    + L+   ++E +
Sbjct: 69  DGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKEGS 116

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score =  109 bits (273), Expect = 2e-28
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 30  ENNGLGISIKGGK---ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
               LG+++ GG    E  +PI +  +  G    +  ++  GD +L+V+G +L E +  E
Sbjct: 34  PGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSE 93

Query: 87  AVKALKRAGKVVELEV 102
           AV  LKR    + L+ 
Sbjct: 94  AVALLKRTSSSIVLKA 109

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score =  135 bits (340), Expect = 4e-33
 Identities = 86/333 (25%), Positives = 131/333 (39%), Gaps = 24/333 (7%)

Query: 22  YSENYKYTENNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNG 76
             E        GLG SI GG  N+       I ++KI +G AA +  +L +GD IL+VN 
Sbjct: 155 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 214

Query: 77  EDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITL 136
             L +  H++AV ALK    VV L+      +              +  S  +   +   
Sbjct: 215 VGLEDVMHEDAVAALKNTYDVVYLK----VAKPSNAYLSDSYAPPDITTSYSQHLDNEIS 270

Query: 137 DENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGK 196
             +Y  +        ++         D +   D     +RI+  + S   GLG +I GG 
Sbjct: 271 HSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHRGST--GLGFNIVGG- 327

Query: 197 ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEV 256
           E+   I IS I  G  AD + +L  GD ILSVNG DLR A+H++A  ALK AG+ V +  
Sbjct: 328 EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIA 387

Query: 257 KYLREVTPYFRKASIISEVGWELQRGFLSDSPPSPSPQSSQRADTRYLPLQLCYLVRNYK 316
           +Y  E                   +          S   S  A  R  P +  Y+   + 
Sbjct: 388 QYKPEEYS------------RFEAKIHDLREQLMNSSLGSGTASLRSNPKRGFYIRALFD 435

Query: 317 HYDSENRTLELHSPDGVHSCILRASDASEASLW 349
           +  +++      +       +L   DA +   W
Sbjct: 436 YDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWW 468

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 81.9 bits (201), Expect = 3e-16
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 154 TVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKEN-----KMPILISKIF 208
            V++ +            E +   I +++  N+GLG SI GG +N        I I+KI 
Sbjct: 39  IVNTDTLEAPGYVNGTEGEMEYEEITLER-GNSGLGFSIAGGTDNPHIGDDPSIFITKII 97

Query: 209 KGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRK 268
            G AA Q  +L V D+IL VN  D+RE TH  AV+ALK AG +V L V   +       +
Sbjct: 98  PGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVME 157

Query: 269 ASIISE 274
             +I  
Sbjct: 158 IKLIKG 163

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 78.4 bits (192), Expect = 4e-15
 Identities = 39/78 (50%), Positives = 47/78 (60%), Gaps = 5/78 (6%)

Query: 30  ENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
            N+GLG SI GG +N        I I+KI  G AA Q  +L V D+IL VN  D+RE TH
Sbjct: 68  GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 127

Query: 85  DEAVKALKRAGKVVELEV 102
             AV+ALK AG +V L V
Sbjct: 128 SAAVEALKEAGSIVRLYV 145

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score =  121 bits (306), Expect = 8e-33
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 3/108 (2%)

Query: 166 DIPDSVENQK--RIIRVKKSENNGLGISIKGGKE-NKMPILISKIFKGMAADQTEQLYVG 222
              D+V N     ++ + K+  + LGIS+      NK  I I +I      D++  L+ G
Sbjct: 5   SSGDTVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPG 64

Query: 223 DAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKAS 270
           D ILS++G  +   +  EA K L    + V LE+  + +     R +S
Sbjct: 65  DHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSS 112

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score =  105 bits (263), Expect = 5e-27
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 29  TENNGLGISIKGGKE-NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
           T  + LGIS+      NK  I I +I      D++  L+ GD ILS++G  +   +  EA
Sbjct: 24  TPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEA 83

Query: 88  VKALKRAGKVVELEV 102
            K L    + V LE+
Sbjct: 84  TKLLASISEKVRLEI 98

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score =  121 bits (306), Expect = 8e-33
 Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 2/103 (1%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
           P     + R I + K  + GLG +I GG++    I +S I  G  AD + +L  GD ILS
Sbjct: 9   PGGDAREPRKIILHK-GSTGLGFNIVGGEDG-EGIFVSFILAGGPADLSGELRRGDRILS 66

Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKAS 270
           VNG +LR ATH++A  ALKRAG+ V +  +Y  E    F  + 
Sbjct: 67  VNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFESSG 109

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score =  106 bits (267), Expect = 1e-27
 Identities = 34/73 (46%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
            + GLG +I GG++    I +S I  G  AD + +L  GD ILSVNG +LR ATH++A  
Sbjct: 24  GSTGLGFNIVGGEDG-EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAA 82

Query: 90  ALKRAGKVVELEV 102
           ALKRAG+ V +  
Sbjct: 83  ALKRAGQSVTIVA 95

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score =  121 bits (306), Expect = 8e-33
 Identities = 39/108 (36%), Positives = 53/108 (49%), Gaps = 10/108 (9%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQ 218
             S     RI+ + +  N  LGISI GG+         E    I I ++ +   A +T  
Sbjct: 9   NFSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNA 68

Query: 219 LYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYF 266
           L  GD IL V+G DL+ A+H EAV+A+K AG  V   V+ L   TP  
Sbjct: 69  LKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSS-TPRV 115

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score =  108 bits (271), Expect = 4e-28
 Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 9/83 (10%)

Query: 29  TENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 79
             N  LGISI GG+         E    I I ++ +   A +T  L  GD IL V+G DL
Sbjct: 24  EPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDL 83

Query: 80  REATHDEAVKALKRAGKVVELEV 102
           + A+H EAV+A+K AG  V   V
Sbjct: 84  QNASHSEAVEAIKNAGNPVVFIV 106

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score =  120 bits (302), Expect = 2e-32
 Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
            +  +   RI+ +KK     LG +I+GGK +++ I ISK+     A +   L  GD +L+
Sbjct: 9   NELTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRA-GLQEGDQVLA 67

Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVKYLR 260
           VN  D ++  H +AV+ LK A ++  + V++  
Sbjct: 68  VNDVDFQDIEHSKAVEILKTAREIS-MRVRFFS 99

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score =  105 bits (263), Expect = 4e-27
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
              LG +I+GGK +++ I ISK+     A +   L  GD +L+VN  D ++  H +AV+
Sbjct: 25 PGAQLGFNIRGGKASQLGIFISKVIPDSDAHRA-GLQEGDQVLAVNDVDFQDIEHSKAVE 83

Query: 90 ALKRAGKVV 98
           LK A ++ 
Sbjct: 84 ILKTAREIS 92

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score =  120 bits (302), Expect = 2e-32
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 172 ENQKRIIRVKKSENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVG 222
             Q R + + +  +  LGISI GG+         E    I I  + +   A +   L  G
Sbjct: 2   SMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPG 61

Query: 223 DAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYL 259
           D I+ V+G DLR+A+H++AV+A+++AG  V   V+ +
Sbjct: 62  DRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI 98

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score =  109 bits (275), Expect = 1e-28
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 9/82 (10%)

Query: 30  ENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 80
            +  LGISI GG+         E    I I  + +   A +   L  GD I+ V+G DLR
Sbjct: 14  PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLR 73

Query: 81  EATHDEAVKALKRAGKVVELEV 102
           +A+H++AV+A+++AG  V   V
Sbjct: 74  DASHEQAVEAIRKAGNPVVFMV 95

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score =  120 bits (302), Expect = 4e-32
 Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 6/102 (5%)

Query: 168 PDSVENQKRIIRV---KKSENNGLGISIKGGKENK---MPILISKIFKGMAADQTEQLYV 221
            +++  Q   +R    KK   + LGISI GG  +    +PI I+ +     A QT++L V
Sbjct: 15  TENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRV 74

Query: 222 GDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263
           GD I+++ G      TH +AV  LK A   +E++V    +V+
Sbjct: 75  GDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVS 116

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score =  110 bits (276), Expect = 1e-28
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 10  PTEAFFFSSRDFYSENYKYTENNGLGISIKGGKENK---MPILISKIFKGMAADQTEQLY 66
            TE  +F S    +   K    + LGISI GG  +    +PI I+ +     A QT++L 
Sbjct: 14  GTENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLR 73

Query: 67  VGDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
           VGD I+++ G      TH +AV  LK A   +E++V
Sbjct: 74  VGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQV 109

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score =  119 bits (301), Expect = 4e-32
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 172 ENQKRIIRVKKSENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVG 222
             Q R + + +  +  LGISI GG+         E    I I  + +   A +   L  G
Sbjct: 22  SMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPG 81

Query: 223 DAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYL 259
           D I+ V+G DLR+A+H++AV+A+++AG  V   V+ +
Sbjct: 82  DRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI 118

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score =  109 bits (274), Expect = 2e-28
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 9/82 (10%)

Query: 30  ENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 80
            +  LGISI GG+         E    I I  + +   A +   L  GD I+ V+G DLR
Sbjct: 34  PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLR 93

Query: 81  EATHDEAVKALKRAGKVVELEV 102
           +A+H++AV+A+++AG  V   V
Sbjct: 94  DASHEQAVEAIRKAGNPVVFMV 115

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score =  118 bits (298), Expect = 7e-32
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 1/96 (1%)

Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
              +     + ++K    G G SI+GG+E KM + + ++ +   A +  ++ VGD I+ +
Sbjct: 6   SGQDFDYFTVDMEK-GAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEI 64

Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
           NGE  R+ TH  A++ +K  G+ V L +K      P
Sbjct: 65  NGESTRDMTHARAIELIKSGGRRVRLLLKRGTGSGP 100

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score =  113 bits (285), Expect = 4e-30
 Identities = 25/73 (34%), Positives = 43/73 (58%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
              G G SI+GG+E KM + + ++ +   A +  ++ VGD I+ +NGE  R+ TH  A++
Sbjct: 20  GAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIE 79

Query: 90  ALKRAGKVVELEV 102
            +K  G+ V L +
Sbjct: 80  LIKSGGRRVRLLL 92

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score =  118 bits (298), Expect = 1e-31
 Identities = 22/87 (25%), Positives = 37/87 (42%)

Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
               + ++K   N +GISI GG +    + I ++F    A     +  GD I  VNG  +
Sbjct: 24  VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSI 83

Query: 234 REATHDEAVKALKRAGKLVELEVKYLR 260
           +  T  E  K ++     V +    L+
Sbjct: 84  KGKTKVEVAKMIQEVKGEVTIHYNKLQ 110

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score =  110 bits (277), Expect = 6e-29
 Identities = 24/93 (25%), Positives = 37/93 (39%)

Query: 11  TEAFFFSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDA 70
           TE  +F S        +    N +GISI GG +    + I ++F    A     +  GD 
Sbjct: 15  TENLYFQSMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDE 74

Query: 71  ILSVNGEDLREATHDEAVKALKRAGKVVELEVG 103
           I  VNG  ++  T  E  K ++     V +   
Sbjct: 75  ITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYN 107

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score =  116 bits (294), Expect = 2e-31
 Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 173 NQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGED 232
           +    I ++K    GLG+SI G   N   + +S I KG  AD   +L  GD IL VNGED
Sbjct: 3   SDTLTIGLQKKPGKGLGLSIVGK-RNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGED 61

Query: 233 LREATHDEAVKALKRAGKLVELEVKYLRE 261
           +R AT +     LK +   V LEV  +  
Sbjct: 62  VRNATQEAVAALLKCSLGTVTLEVGRIST 90

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score =  109 bits (275), Expect = 6e-29
 Identities = 33/74 (44%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
              GLG+SI G   N   + +S I KG  AD   +L  GD IL VNGED+R AT +    
Sbjct: 14  PGKGLGLSIVGK-RNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAA 72

Query: 90  ALKRAGKVVELEVG 103
            LK +   V LEVG
Sbjct: 73  LLKCSLGTVTLEVG 86

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score =  117 bits (295), Expect = 2e-31
 Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 159 SSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQ 218
           S      +           + +++    G G S++GG+E  M + + ++ +   A+++ +
Sbjct: 9   SGVDLGTENLYFQSMDFYTVELER-GAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGK 67

Query: 219 LYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK 257
           + +GD IL +NGE  +   H  A++ +K  G+ V L +K
Sbjct: 68  MRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLK 106

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score =  115 bits (291), Expect = 9e-31
 Identities = 21/73 (28%), Positives = 42/73 (57%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
              G G S++GG+E  M + + ++ +   A+++ ++ +GD IL +NGE  +   H  A++
Sbjct: 33  GAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIE 92

Query: 90  ALKRAGKVVELEV 102
            +K  G+ V L +
Sbjct: 93  LIKNGGRRVRLFL 105

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score =  118 bits (297), Expect = 2e-31
 Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 14/139 (10%)

Query: 157 SISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQT 216
           S SS      +       ++ + +   +   LG++I+GG E  + I I+ +  G  A+ +
Sbjct: 3   SGSSGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGS 62

Query: 217 EQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVG 276
             L VGD IL VNG       HDEAV+ LK +  L+ L VK +  + P+ R  + + E  
Sbjct: 63  -GLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLI-LTVKDVGRL-PHAR--TTVDETK 117

Query: 277 WELQRGFLSDSPPSPSPQS 295
           W            S  P S
Sbjct: 118 W---------IASSSGPSS 127

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score =  100 bits (251), Expect = 3e-25
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
          +   LG++I+GG E  + I I+ +  G  A+ +  L VGD IL VNG       HDEAV+
Sbjct: 30 DGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGS-GLKVGDQILEVNGRSFLNILHDEAVR 88

Query: 90 ALKRAGKVV 98
           LK +  ++
Sbjct: 89 LLKSSRHLI 97

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score =  117 bits (294), Expect = 2e-31
 Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 170 SVENQKRIIRVKKSENNGLGISIKGGK------ENKMPILISKIFKGMAADQTEQLYVGD 223
           S  +  R +        GLG SI GGK           I +S+I +G AA +   L VGD
Sbjct: 2   SSGSSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGD 61

Query: 224 AILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
            +LS+NG D+ EA HD AV  L  A   + L ++      P
Sbjct: 62  RVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAGSGP 102

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score =  109 bits (275), Expect = 9e-29
 Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 30  ENNGLGISIKGGK------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
              GLG SI GGK           I +S+I +G AA +   L VGD +LS+NG D+ EA 
Sbjct: 16  SERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEAR 75

Query: 84  HDEAVKALKRAGKVVELEV 102
           HD AV  L  A   + L +
Sbjct: 76  HDHAVSLLTAASPTIALLL 94

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score =  117 bits (295), Expect = 3e-31
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 4/106 (3%)

Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGK----ENKMPILISKIFKGMAADQTEQLYVGDA 224
             V  +   + +      G GI ++G          P LIS I     A++   L +GD 
Sbjct: 10  QVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDR 69

Query: 225 ILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKAS 270
           ++++NG    ++T +EA + L+ +    ++ ++   +V      +S
Sbjct: 70  VMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSS 115

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score =  102 bits (256), Expect = 4e-26
 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 30  ENNGLGISIKGGK----ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
              G GI ++G          P LIS I     A++   L +GD ++++NG    ++T +
Sbjct: 25  PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFE 84

Query: 86  EAVKALKRAGKVVELEVGVGY 106
           EA + L+ +    ++ + + +
Sbjct: 85  EANQLLRDSSITSKVTLEIEF 105

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score =  116 bits (293), Expect = 3e-31
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVN 229
           S  +    +RV+KS    LG S++GG E+ + I +SK+ +G +A++   L VGD I  VN
Sbjct: 6   SGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERA-GLCVGDKITEVN 64

Query: 230 GEDLREATHDEAVKALKRAGKLVELEVKYLREVTPY 265
           G  L   T   AVK L  + +L  + V+ +      
Sbjct: 65  GLSLESTTMGSAVKVLTSSSRLH-MMVRRMGSGPSS 99

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score =  101 bits (254), Expect = 6e-26
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 29 TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
          +    LG S++GG E+ + I +SK+ +G +A++   L VGD I  VNG  L   T   AV
Sbjct: 19 SPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERA-GLCVGDKITEVNGLSLESTTMGSAV 77

Query: 89 KALKRAGKVV 98
          K L  + ++ 
Sbjct: 78 KVLTSSSRLH 87

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score =  116 bits (293), Expect = 4e-31
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYV 221
            + V  ++  + ++K    G GI++ GG++N      +  I+IS +  G  AD    L  
Sbjct: 8   MEEVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADG--LLQE 65

Query: 222 GDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREV 262
            D ++ VNG  + +  H  AV+ L+++GK+  + VK  R+V
Sbjct: 66  NDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKV 106

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score =  100 bits (252), Expect = 1e-25
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 31  NNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
             G GI++ GG++N      +  I+IS +  G  AD    L   D ++ VNG  + +  H
Sbjct: 25  KRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADG--LLQENDRVVMVNGTPMEDVLH 82

Query: 85  DEAVKALKRAGKVVELEV 102
             AV+ L+++GK+  + V
Sbjct: 83  SFAVQQLRKSGKIAAIVV 100

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score =  116 bits (292), Expect = 5e-31
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 1/104 (0%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQ-TEQLYVGDAIL 226
                +   +IR+K  EN   G ++KGG + KMP+++S++  G  AD    +L  GD ++
Sbjct: 9   GGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVV 68

Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKAS 270
            +NG D+ E THD+ V  +K + +    E+  L      +    
Sbjct: 69  LINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVE 112

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score =  102 bits (255), Expect = 5e-26
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQ-TEQLYVGDAILSVNGEDLREATHDEAV 88
           EN   G ++KGG + KMP+++S++  G  AD    +L  GD ++ +NG D+ E THD+ V
Sbjct: 25  ENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVV 84

Query: 89  KALKRAGKVVELEV 102
             +K + +    E+
Sbjct: 85  LFIKASCERHSGEL 98

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score =  116 bits (292), Expect = 5e-31
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 5/102 (4%)

Query: 167 IPDSVENQKRIIRVKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYV 221
            P +     R  +      NGLGI I GGKE      ++   I+KI  G +A+QT +L  
Sbjct: 11  FPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLME 70

Query: 222 GDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263
           G  +L  NG  L   T++E    + +     E+ V+    ++
Sbjct: 71  GMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNMS 112

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score =  107 bits (270), Expect = 6e-28
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 27  KYTENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 81
                NGLGI I GGKE      ++   I+KI  G +A+QT +L  G  +L  NG  L  
Sbjct: 25  HTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTS 84

Query: 82  ATHDEAVKALKRAGKVVELEV 102
            T++E    + +     E+ V
Sbjct: 85  KTYEEVQSIISQQSGEAEICV 105

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score =  115 bits (291), Expect = 6e-31
 Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 4/93 (4%)

Query: 174 QKRIIRVKKSENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGED 232
            +  I + K    GLG+SI GG +  +  I+I ++++  AA +  +L+ GD IL VNG D
Sbjct: 4   CETTIEISK-GRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGID 62

Query: 233 LREATHDEAVKALKRAGKLVELEVKYLREVTPY 265
           LR+ATHDEA+  L++  + V L +   R+  PY
Sbjct: 63  LRKATHDEAINVLRQTPQRVRLTLY--RDEAPY 93

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score =  108 bits (273), Expect = 1e-28
 Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 30  ENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
              GLG+SI GG +  +  I+I ++++  AA +  +L+ GD IL VNG DLR+ATHDEA+
Sbjct: 13  GRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAI 72

Query: 89  KALKRAGKVVELEVG 103
             L++  + V L + 
Sbjct: 73  NVLRQTPQRVRLTLY 87

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score =  115 bits (290), Expect = 7e-31
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKENKMP-ILISKIFKGMAADQTEQLYVGDAILSV 228
           S  +   ++RVKK     LGI+I+GG   + P   I  I +G +A    QL VG  IL V
Sbjct: 2   SSGSSGTLVRVKK-SAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEV 60

Query: 229 NGEDLREATHDEAVKALKRAGKLVELEV 256
           NG  LR   H EA + +  A K  + + 
Sbjct: 61  NGLTLRGKEHREAARIIAEAFKTKDRDY 88

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score =  110 bits (276), Expect = 7e-29
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 30  ENNGLGISIKGGKENKMP-ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
               LGI+I+GG   + P   I  I +G +A    QL VG  IL VNG  LR   H EA 
Sbjct: 15  SAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAA 74

Query: 89  KALKRAGKVVELEV 102
           + +  A K  + + 
Sbjct: 75  RIIAEAFKTKDRDY 88

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score =  116 bits (292), Expect = 8e-31
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 4/124 (3%)

Query: 171 VENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNG 230
           +E     +R+ K +  GLG  +K       P++IS + +G AA+Q+  +  GD IL+VN 
Sbjct: 5   IEPNVISVRLFKRKVGGLGFLVKERVSK-PPVIISDLIRGGAAEQSGLIQAGDIILAVND 63

Query: 231 EDLREATHDEAVKALKRAGK--LVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDSP 288
             L + ++D A++ L+       V L ++     T +            +  R      P
Sbjct: 64  RPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTP-KTIRVTQPLGP 122

Query: 289 PSPS 292
           P+ +
Sbjct: 123 PTKA 126

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score =  108 bits (270), Expect = 7e-28
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
           +  GLG  +K       P++IS + +G AA+Q+  +  GD IL+VN   L + ++D A++
Sbjct: 18  KVGGLGFLVKERVSK-PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALE 76

Query: 90  ALKRAGKVVELEV 102
            L+       + +
Sbjct: 77  VLRGIASETHVVL 89

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score =  115 bits (289), Expect = 1e-30
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQ-TEQLYVGDAIL 226
                +   +IR+K  EN   G ++KGG + KMP+++S++  G  AD    +L  GD ++
Sbjct: 11  GGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVV 70

Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVK 257
            +NG D+ E THD+ V  +K + +    E+ 
Sbjct: 71  LINGRDIAEHTHDQVVLFIKASCERHSGELM 101

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score =  104 bits (261), Expect = 6e-27
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQ-TEQLYVGDAILSVNGEDLREATHDEAV 88
           EN   G ++KGG + KMP+++S++  G  AD    +L  GD ++ +NG D+ E THD+ V
Sbjct: 27  ENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVV 86

Query: 89  KALKRAGKVVELEV 102
             +K + +    E+
Sbjct: 87  LFIKASCERHSGEL 100

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score =  115 bits (289), Expect = 1e-30
 Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGK-------ENKMPILISKIFKGMAADQTEQLY 220
             S   Q   + + + EN G G  I              +P  I +I  G  AD+  +L 
Sbjct: 4   GSSGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLK 63

Query: 221 VGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
           VGD IL+VNG+ +    H + VK +K AG  V L +    E+  
Sbjct: 64  VGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEELNS 107

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score =  105 bits (263), Expect = 4e-27
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 30  ENNGLGISIKGGK-------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 82
           EN G G  I              +P  I +I  G  AD+  +L VGD IL+VNG+ +   
Sbjct: 20  ENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINM 79

Query: 83  THDEAVKALKRAGKVVELEV 102
            H + VK +K AG  V L +
Sbjct: 80  PHADIVKLIKDAGLSVTLRI 99

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score =  114 bits (288), Expect = 2e-30
 Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVN 229
           S   ++  + +++   +G G  I GG E   PILI  +    +AD+  +L+ GD ++ V+
Sbjct: 5   SSGYKELDVHLRR-MESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVD 63

Query: 230 GEDLREATHDEAVKALKRAGKLVELEVKYLREV 262
           G  +   TH   +  +  A +  ++ +   R+V
Sbjct: 64  GIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKV 96

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score =  110 bits (276), Expect = 6e-29
 Identities = 21/75 (28%), Positives = 37/75 (49%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
             +G G  I GG E   PILI  +    +AD+  +L+ GD ++ V+G  +   TH   + 
Sbjct: 18  MESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVID 77

Query: 90  ALKRAGKVVELEVGV 104
            +  A +  ++ + V
Sbjct: 78  LMHHAARNGQVNLTV 92

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score =  114 bits (288), Expect = 2e-30
 Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
           +R+ K +  GLG  +K    +K P++IS + +G AA+Q+  +  GD IL+VN   L + +
Sbjct: 5   VRLFKRKVGGLGFLVKER-VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS 63

Query: 238 HDEAVKALKRAGKLVELEVKYLRE 261
           +D A++ L+       + +     
Sbjct: 64  YDSALEVLRGIASETHVVLILRGP 87

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score =  109 bits (275), Expect = 1e-28
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
           +  GLG  +K    +K P++IS + +G AA+Q+  +  GD IL+VN   L + ++D A++
Sbjct: 11  KVGGLGFLVKER-VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALE 69

Query: 90  ALKRAGKVVELEV 102
            L+       + +
Sbjct: 70  VLRGIASETHVVL 82

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score =  114 bits (287), Expect = 3e-30
 Identities = 39/101 (38%), Positives = 62/101 (61%), Gaps = 4/101 (3%)

Query: 171 VENQKRIIRVKKSENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVN 229
           V  Q+ II + K   +GLG+SI GGK+  +  I+I ++++  AA +  +L+ GD IL VN
Sbjct: 14  VPGQEMIIEISK-GRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVN 72

Query: 230 GEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKAS 270
           G DLR ++H+EA+ AL++  + V L V   R+   Y  + S
Sbjct: 73  GVDLRNSSHEEAITALRQTPQKVRLVV--YRDEAHYRDEES 111

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score =  109 bits (275), Expect = 1e-28
 Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 1/74 (1%)

Query: 30  ENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
             +GLG+SI GGK+  +  I+I ++++  AA +  +L+ GD IL VNG DLR ++H+EA+
Sbjct: 26  GRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAI 85

Query: 89  KALKRAGKVVELEV 102
            AL++  + V L V
Sbjct: 86  TALRQTPQKVRLVV 99

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score =  113 bits (286), Expect = 3e-30
 Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 10/104 (9%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYV 221
           P  +E ++  + + + +  GLGISI GGK +         I IS++ +   A +   + V
Sbjct: 9   PARIEEEELTLTILR-QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA-GVRV 66

Query: 222 GDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPY 265
           GD +L VNG  L+ A H EAV+AL+ AG  V++ V   RE  P 
Sbjct: 67  GDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVW--RESGPS 108

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score =  103 bits (258), Expect = 2e-26
 Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 7/79 (8%)

Query: 30  ENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
           +  GLGISI GGK +         I IS++ +   A +   + VGD +L VNG  L+ A 
Sbjct: 24  QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGAE 82

Query: 84  HDEAVKALKRAGKVVELEV 102
           H EAV+AL+ AG  V++ V
Sbjct: 83  HHEAVEALRGAGTAVQMRV 101

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score =  113 bits (284), Expect = 5e-30
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 7/92 (7%)

Query: 178 IRVKKSENNGLGISIKGG----KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
           + + K E N  G  I+GG    +    P++I+ +  G  AD+   +  GD +LSV+G  L
Sbjct: 7   VTLHK-EGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRL 65

Query: 234 REATHDEAVKALKRAGKLVELEVKYLREVTPY 265
              TH EA+  LK+ G+   L ++   +V+  
Sbjct: 66  LGTTHAEAMSILKQCGQEAALLIE--YDVSET 95

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score =  109 bits (274), Expect = 1e-28
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 30  ENNGLGISIKGG----KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
           E N  G  I+GG    +    P++I+ +  G  AD+   +  GD +LSV+G  L   TH 
Sbjct: 12  EGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHA 71

Query: 86  EAVKALKRAGKVVELEV 102
           EA+  LK+ G+   L +
Sbjct: 72  EAMSILKQCGQEAALLI 88

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score =  113 bits (284), Expect = 5e-30
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 176 RIIRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVN 229
            ++ + K+     GI I  G+           I I  I     A    +L VGD ILS+N
Sbjct: 7   HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN 66

Query: 230 GEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
           G+D+R +T    +  +K A   +ELE++   +
Sbjct: 67  GKDVRNSTEQAVIDLIKEADFKIELEIQTFDK 98

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score =  105 bits (264), Expect = 2e-27
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 29  TENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 82
           T     GI I  G+           I I  I     A    +L VGD ILS+NG+D+R +
Sbjct: 14  TGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNS 73

Query: 83  THDEAVKALKRAGKVVELEV 102
           T    +  +K A   +ELE+
Sbjct: 74  TEQAVIDLIKEADFKIELEI 93

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score =  113 bits (284), Expect = 6e-30
 Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 9/98 (9%)

Query: 176 RIIRVKKSENNGLGISIKGGKENK---------MPILISKIFKGMAADQTEQLYVGDAIL 226
           R + ++K+    LGISI+GG               I ISK+    AA +  +L VG  +L
Sbjct: 11  RELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLL 70

Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
            VN + L   TH EAV+ L+  G  + + V    E  P
Sbjct: 71  EVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFESGP 108

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score =  102 bits (256), Expect = 4e-26
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 30  ENNGLGISIKGGKENK---------MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 80
               LGISI+GG               I ISK+    AA +  +L VG  +L VN + L 
Sbjct: 19  PGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLL 78

Query: 81  EATHDEAVKALKRAGKVVELEVGVGYGR 108
             TH EAV+ L+  G  + + V  G+  
Sbjct: 79  GLTHGEAVQLLRSVGDTLTVLVCDGFES 106

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score =  112 bits (283), Expect = 7e-30
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGK---ENKMPILISKIFKGMAADQTEQLYVGDA 224
             S   +  II V   + NG+G+SI   K   ++K+ I +  + KG AAD   +L  GD 
Sbjct: 3   LGSDHKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQ 62

Query: 225 ILSVNGEDLREATHDEAVKALKRAGKLVELEV 256
           +LSV+G  L   + + A + + R   +V LEV
Sbjct: 63  LLSVDGRSLVGLSQERAAELMTRTSSVVTLEV 94

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score =  105 bits (263), Expect = 4e-27
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 31  NNGLGISIKGGK---ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
            NG+G+SI   K   ++K+ I +  + KG AAD   +L  GD +LSV+G  L   + + A
Sbjct: 20  QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERA 79

Query: 88  VKALKRAGKVVELEVG 103
            + + R   VV LEV 
Sbjct: 80  AELMTRTSSVVTLEVA 95

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score =  112 bits (283), Expect = 8e-30
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
           P + EN+++ + +    + GLG SI  G   K  I IS +  G  + +   L +GD I+ 
Sbjct: 9   PGNRENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEV-GLEIGDQIVE 67

Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVKY 258
           VNG D     H EAV  LK +  L    V  
Sbjct: 68  VNGVDFSNLDHKEAVNVLKSSRSLTISIVAA 98

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score =  100 bits (250), Expect = 2e-25
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
            + GLG SI  G   K  I IS +  G  + +   L +GD I+ VNG D     H EAV 
Sbjct: 25  GSRGLGCSISSGPIQKPGIFISHVKPGSLSAEV-GLEIGDQIVEVNGVDFSNLDHKEAVN 83

Query: 90  ALKRAGKVVELEV 102
            LK +  +    V
Sbjct: 84  VLKSSRSLTISIV 96

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score =  111 bits (280), Expect = 1e-29
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
            ++ I + + +  G G  I GG E   PI I  I    AAD   +L  GD ++SV+G  +
Sbjct: 2   MEQDIFLWR-KETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPV 60

Query: 234 REATHDEAVKALKRAGK--LVELEVKYLR 260
              +H   V+ +++A K   V L V+  R
Sbjct: 61  IGKSHQLVVQLMQQAAKQGHVNLTVRQTR 89

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score =  108 bits (272), Expect = 2e-28
 Identities = 25/79 (31%), Positives = 38/79 (48%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
           +  G G  I GG E   PI I  I    AAD   +L  GD ++SV+G  +   +H   V+
Sbjct: 11  KETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQ 70

Query: 90  ALKRAGKVVELEVGVGYGR 108
            +++A K   + + V   R
Sbjct: 71  LMQQAAKQGHVNLTVRQTR 89

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score =  111 bits (280), Expect = 1e-29
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 8/96 (8%)

Query: 174 QKRIIRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILS 227
           ++  + + + +  GLGISI GGK +         I IS++ +   A +   + VGD +L 
Sbjct: 3   EELTLTILR-QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA-GVRVGDKLLE 60

Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263
           VNG  L+ A H EAV+AL+ AG  V++ V   RE +
Sbjct: 61  VNGVALQGAEHHEAVEALRGAGTAVQMRVWRERETS 96

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score =  103 bits (258), Expect = 1e-26
 Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 7/79 (8%)

Query: 30  ENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
           +  GLGISI GGK +         I IS++ +   A +   + VGD +L VNG  L+ A 
Sbjct: 12  QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGAE 70

Query: 84  HDEAVKALKRAGKVVELEV 102
           H EAV+AL+ AG  V++ V
Sbjct: 71  HHEAVEALRGAGTAVQMRV 89

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score =  112 bits (282), Expect = 2e-29
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 157 SISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENK-MPILISKIFKGMAADQ 215
           S  S   T+   D       +  + K E  GLG S+ GG + +   I + ++F    A Q
Sbjct: 2   SSGSSGATLKQLDG----IHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQ 57

Query: 216 TEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
              +  G+ +LS+NG+ L+  TH +A+  L++A +  +  +   + 
Sbjct: 58  EGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKL 103

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score =  105 bits (264), Expect = 4e-27
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 30  ENNGLGISIKGGKENK-MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
           E  GLG S+ GG + +   I + ++F    A Q   +  G+ +LS+NG+ L+  TH +A+
Sbjct: 25  EGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDAL 84

Query: 89  KALKRAGKVVELEV 102
             L++A +  +  +
Sbjct: 85  AILRQAREPRQAVI 98

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score =  111 bits (280), Expect = 2e-29
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 8/104 (7%)

Query: 170 SVENQKRIIRVKKSENNGLGISIKGGK--------ENKMPILISKIFKGMAADQTEQLYV 221
           S  + K +  V   ++  LG +I GG+         +   I +SKI     A +   L +
Sbjct: 3   SGSSGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQI 62

Query: 222 GDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPY 265
            D I+ VNG DL  ATHD+AV+A K A + + ++V         
Sbjct: 63  HDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSGPSS 106

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score =  108 bits (272), Expect = 3e-28
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 8/81 (9%)

Query: 30  ENNGLGISIKGGK--------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 81
           ++  LG +I GG+         +   I +SKI     A +   L + D I+ VNG DL  
Sbjct: 17  DSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSR 76

Query: 82  ATHDEAVKALKRAGKVVELEV 102
           ATHD+AV+A K A + + ++V
Sbjct: 77  ATHDQAVEAFKTAKEPIVVQV 97

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score =  111 bits (279), Expect = 2e-29
 Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 3/96 (3%)

Query: 170 SVENQKRIIRVKK-SENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
               + R++ +++   + GLG SI+GG E+ + I +S +  G  A++ E L VGD IL V
Sbjct: 4   GSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEK-EGLRVGDQILRV 62

Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
           N + L   TH EAVKALK + KLV L V     ++ 
Sbjct: 63  NDKSLARVTHAEAVKALKGSKKLV-LSVYSAGRISG 97

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score =  105 bits (265), Expect = 2e-27
 Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 27  KYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
           +   + GLG SI+GG E+ + I +S +  G  A++ E L VGD IL VN + L   TH E
Sbjct: 16  RAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEK-EGLRVGDQILRVNDKSLARVTHAE 74

Query: 87  AVKALKRAGKVVELEVGVG 105
           AVKALK + K+V      G
Sbjct: 75  AVKALKGSKKLVLSVYSAG 93

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score =  110 bits (278), Expect = 3e-29
 Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVG 222
             +  ++  + + ++   G GI+I GG++N      +  I+IS + KG  A+   QL   
Sbjct: 2   SHMIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEG--QLQEN 59

Query: 223 DAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
           D +  VNG  +    H  AV+ L+++GK  ++ ++  +    
Sbjct: 60  DRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGW 101

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score =  101 bits (253), Expect = 8e-26
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 31  NNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
             G GI+I GG++N      +  I+IS + KG  A+   QL   D +  VNG  +    H
Sbjct: 18  GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEG--QLQENDRVAMVNGVSMDNVEH 75

Query: 85  DEAVKALKRAGKVVELEV 102
             AV+ L+++GK  ++ +
Sbjct: 76  AFAVQQLRKSGKNAKITI 93

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score =  110 bits (278), Expect = 5e-29
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 6/111 (5%)

Query: 159 SSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENK-----MPILISKIFKGMAA 213
           SS    ++        +  I + +   +GLG +I GG + +       I +S+I +  AA
Sbjct: 2   SSGSSGMNGRVDYLVTEEEINLTR-GPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAA 60

Query: 214 DQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
               +L  GD ILSVNG+DL+   H +AV   + AG  V L V++  +V  
Sbjct: 61  ALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQN 111

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score =  105 bits (264), Expect = 3e-27
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 5/78 (6%)

Query: 30  ENNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
             +GLG +I GG + +       I +S+I +  AA    +L  GD ILSVNG+DL+   H
Sbjct: 26  GPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLH 85

Query: 85  DEAVKALKRAGKVVELEV 102
            +AV   + AG  V L V
Sbjct: 86  QDAVDLFRNAGYAVSLRV 103

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score =  110 bits (277), Expect = 5e-29
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 6/97 (6%)

Query: 172 ENQKRIIRVKKSENNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVGDAIL 226
              +  I + +   +GLG +I GG + +       I +S+I +  AA    +L  GD IL
Sbjct: 5   LVTEEEINLTR-GPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKIL 63

Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263
           SVNG+DL+   H +AV   + AG  V L V++  E +
Sbjct: 64  SVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLESS 100

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score =  106 bits (267), Expect = 9e-28
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 8/93 (8%)

Query: 18  SRDFYSENYKYT---ENNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVGD 69
           S D+     +       +GLG +I GG + +       I +S+I +  AA    +L  GD
Sbjct: 1   SMDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGD 60

Query: 70  AILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
            ILSVNG+DL+   H +AV   + AG  V L V
Sbjct: 61  KILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 93

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score =  111 bits (278), Expect = 5e-29
 Identities = 30/113 (26%), Positives = 64/113 (56%), Gaps = 14/113 (12%)

Query: 163 DTVDIPDSVENQK-RIIRVKKSENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLY 220
            T+  P+ +  +  R++R+KK     L ++++GG ++ +  +++S +++G AA++   + 
Sbjct: 6   ATMFSPEQIAGKDVRLLRIKKEG--SLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVV 63

Query: 221 VGDAILSVNGEDLREATHDEAVKALKRA----GKLVELEVK------YLREVT 263
            GD I+++NG+ + + T  EA  AL++A    G  ++L V       Y  E+T
Sbjct: 64  KGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDELT 116

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score =  105 bits (264), Expect = 4e-27
 Identities = 21/81 (25%), Positives = 49/81 (60%), Gaps = 5/81 (6%)

Query: 27  KYTENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
           +  +   L ++++GG ++ +  +++S +++G AA++   +  GD I+++NG+ + + T  
Sbjct: 23  RIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLA 82

Query: 86  EAVKALKRA----GKVVELEV 102
           EA  AL++A    G  ++L V
Sbjct: 83  EAEAALQKAWNQGGDWIDLVV 103

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score =  109 bits (274), Expect = 1e-28
 Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAI 225
                +    + + +    G G+++ GG++     P+ +  + K   A +  +L VGD +
Sbjct: 5   SSGQASGHFSVELVR-GYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLV 63

Query: 226 LSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
           L +NGE  +  TH +AV+ ++  G  + L ++    
Sbjct: 64  LHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLS 99

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score =  105 bits (264), Expect = 3e-27
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 30  ENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
              G G+++ GG++     P+ +  + K   A +  +L VGD +L +NGE  +  TH +A
Sbjct: 20  GYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQA 79

Query: 88  VKALKRAGKVVELEV 102
           V+ ++  G  + L +
Sbjct: 80  VERIRAGGPQLHLVI 94

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score =  107 bits (270), Expect = 3e-28
 Identities = 22/83 (26%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           + + V+       G ++KGG E+  P+ +SKI  G  A  ++++  GD ++++NG  L  
Sbjct: 11  QYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPL-Y 69

Query: 236 ATHDEAVKALKRAGKLVELEVKY 258
            +  EA+  +K + ++++L V+ 
Sbjct: 70  GSRQEALILIKGSFRILKLIVRR 92

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score =  102 bits (255), Expect = 3e-26
 Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 29  TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
                 G ++KGG E+  P+ +SKI  G  A  ++++  GD ++++NG  L   +  EA+
Sbjct: 18  QGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPL-YGSRQEAL 76

Query: 89  KALKRAGKVVELEV 102
             +K + ++++L V
Sbjct: 77  ILIKGSFRILKLIV 90

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score =  107 bits (269), Expect = 4e-28
 Identities = 25/90 (27%), Positives = 52/90 (57%), Gaps = 3/90 (3%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           +IIR+ K+    LG +IK  ++    I++++I +G AAD++  ++VGD +  VNG  + +
Sbjct: 6   KIIRLVKN-REPLGATIKKDEQT-GAIIVARIMRGGAADRSGLIHVGDELREVNGIPVED 63

Query: 236 ATHDEAVKALKRAGKLVELEVK-YLREVTP 264
              +E ++ L ++   +  ++    +E TP
Sbjct: 64  KRPEEIIQILAQSQGAITFKIIPGSKEETP 93

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score =  102 bits (255), Expect = 3e-26
 Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
               LG +IK  ++    I++++I +G AAD++  ++VGD +  VNG  + +   +E ++
Sbjct: 13  NREPLGATIKKDEQT-GAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQ 71

Query: 90  ALKRAGKVVELEVGVGY 106
            L ++   +  ++  G 
Sbjct: 72  ILAQSQGAITFKIIPGS 88

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score =  107 bits (270), Expect = 5e-28
 Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 3/106 (2%)

Query: 152 SNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGM 211
           S +   I+       I        +I+R++K+ +  LG +++   +    ++IS+I KG 
Sbjct: 3   SGSSGPITDERVYESIGHYGGETVKIVRIEKARDIPLGATVRNEMD---SVIISRIVKGG 59

Query: 212 AADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK 257
           AA+++  L+ GD +L +NG ++R    +E    L      +   + 
Sbjct: 60  AAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLI 105

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 97.5 bits (243), Expect = 2e-24
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
            +  LG +++   +    ++IS+I KG AA+++  L+ GD +L +NG ++R    +E   
Sbjct: 35  RDIPLGATVRNEMD---SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFD 91

Query: 90  ALKRAGKVVELEV 102
            L      +   +
Sbjct: 92  LLSDMHGTLTFVL 104

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score =  107 bits (269), Expect = 5e-28
 Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 178 IRVKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGED 232
           I +++  N+GLG SI GG +N        I I+KI  G AA    +L V D +L VN  D
Sbjct: 8   IVLER-GNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVD 66

Query: 233 LREATHDEAVKALKRAGKLVELEVKYLREVTP 264
           + E  H  AV+ALK AG +V L V+  +    
Sbjct: 67  VSEVVHSRAVEALKEAGPVVRLVVRRRQPPPE 98

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score =  106 bits (266), Expect = 1e-27
 Identities = 36/78 (46%), Positives = 43/78 (55%), Gaps = 5/78 (6%)

Query: 30  ENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
            N+GLG SI GG +N        I I+KI  G AA    +L V D +L VN  D+ E  H
Sbjct: 13  GNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVH 72

Query: 85  DEAVKALKRAGKVVELEV 102
             AV+ALK AG VV L V
Sbjct: 73  SRAVEALKEAGPVVRLVV 90

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score =  107 bits (269), Expect = 6e-28
 Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 174 QKRIIRVKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSV 228
           +   I++ K    GLG SI GG  N        I ++KI +G AA +  +L +GD +L+V
Sbjct: 3   KIMEIKLIK-GPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61

Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIIS 273
           N   L E TH+EAV ALK     V L+V   +  + Y  +     
Sbjct: 62  NSVSLEEVTHEEAVTALKNTSDFVYLKVA--KPTSMYISRHHHHH 104

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score =  103 bits (260), Expect = 9e-27
 Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 5/79 (6%)

Query: 30  ENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
              GLG SI GG  N        I ++KI +G AA +  +L +GD +L+VN   L E TH
Sbjct: 12  GPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTH 71

Query: 85  DEAVKALKRAGKVVELEVG 103
           +EAV ALK     V L+V 
Sbjct: 72  EEAVTALKNTSDFVYLKVA 90

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score =  107 bits (269), Expect = 8e-28
 Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 9/121 (7%)

Query: 150 LNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENK-----MPILI 204
           ++ +   S    + T ++         I   K     GLG SI GG  N+       I +
Sbjct: 1   MHHHHHHSSGVDLGTENLYFQSMTVVEIKLFK--GPKGLGFSIAGGVGNQHIPGDNSIYV 58

Query: 205 SKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
           +KI  G AA +  +L VGD +L VN   L E TH+EAV  LK   ++V L+V   +  T 
Sbjct: 59  TKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVG--KPTTI 116

Query: 265 Y 265
           Y
Sbjct: 117 Y 117

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score =  103 bits (259), Expect = 2e-26
 Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 5/79 (6%)

Query: 30  ENNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
              GLG SI GG  N+       I ++KI  G AA +  +L VGD +L VN   L E TH
Sbjct: 33  GPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTH 92

Query: 85  DEAVKALKRAGKVVELEVG 103
           +EAV  LK   +VV L+VG
Sbjct: 93  EEAVAILKNTSEVVYLKVG 111

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score =  106 bits (267), Expect = 1e-27
 Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 6/104 (5%)

Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAI 225
            +      +  + K  + GLG S+ G +     ++ I + +I +G  A +  +L   D I
Sbjct: 15  MAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQI 74

Query: 226 LSVNGEDLREA-THDEAVKALKRAGKLVELEVKYLREVTPYFRK 268
           L++NG+ L +  TH +A+  L++A   V+L +   R   P + K
Sbjct: 75  LAINGQALDQTITHQQAISILQKAKDTVQLVIA--RGSLPQYYK 116

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 98.2 bits (245), Expect = 1e-24
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 30  ENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA-THD 85
            + GLG S+ G +     ++ I + +I +G  A +  +L   D IL++NG+ L +  TH 
Sbjct: 30  PSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQ 89

Query: 86  EAVKALKRAGKVVELEVG 103
           +A+  L++A   V+L + 
Sbjct: 90  QAISILQKAKDTVQLVIA 107

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score =  106 bits (266), Expect = 2e-27
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 150 LNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKEN---KMPILISK 206
           ++ +   S    + T ++      Q + I +++   +GLG SI GG  +    +PI +  
Sbjct: 1   MHHHHHHSSGVDLGTENLYFQSMPQCKSITLER-GPDGLGFSIVGGYGSPHGDLPIYVKT 59

Query: 207 IFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263
           +F   AA +  +L  GD I++VNG+ L   TH+EAV  LKR    V L V    E +
Sbjct: 60  VFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETS 116

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 98.6 bits (246), Expect = 1e-24
 Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 30  ENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
             +GLG SI GG  +    +PI +  +F   AA +  +L  GD I++VNG+ L   TH+E
Sbjct: 34  GPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEE 93

Query: 87  AVKALKRAGKVVELEV 102
           AV  LKR    V L V
Sbjct: 94  AVAILKRTKGTVTLMV 109

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score =  106 bits (266), Expect = 2e-27
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
                 + R ++V+K  +  LGISI  G++    I +SK+  G  A Q   L  GD +L 
Sbjct: 13  DRPYVEEPRHVKVQKG-SEPLGISIVSGEK--GGIYVSKVTVGSIAHQ-AGLEYGDQLLE 68

Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVKYLREV 262
            NG +LR AT  +A   + +    + +  +Y   V
Sbjct: 69  FNGINLRSATEQQARLIIGQQCDTITILAQYNPHV 103

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 97.9 bits (244), Expect = 2e-24
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
            +  LGISI  G++    I +SK+  G  A Q   L  GD +L  NG +LR AT  +A  
Sbjct: 28  GSEPLGISIVSGEK--GGIYVSKVTVGSIAHQ-AGLEYGDQLLEFNGINLRSATEQQARL 84

Query: 90  ALKRAGKVVELEV 102
            + +    + +  
Sbjct: 85  IIGQQCDTITILA 97

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score =  106 bits (266), Expect = 3e-27
 Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVG 222
            DS   +   + + + +   LGI I G            I +  +  G AA     + V 
Sbjct: 9   SDSSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVN 68

Query: 223 DAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
           D I++V+G +++   + + V+ L+ AG++V L +   +  + 
Sbjct: 69  DKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSS 110

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score =  100 bits (250), Expect = 4e-25
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 30  ENNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
           +   LGI I G            I +  +  G AA     + V D I++V+G +++   +
Sbjct: 25  DGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFAN 84

Query: 85  DEAVKALKRAGKVVELEVG 103
            + V+ L+ AG+VV L + 
Sbjct: 85  HDVVEVLRNAGQVVHLTLV 103

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score =  106 bits (265), Expect = 4e-27
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 13/108 (12%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENK----MPILISKIFKGMAADQTEQLYVGD 223
            +S E     I +  S + GLG+S+KG K  +    + I I  I  G AA +  +L + D
Sbjct: 19  LESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMND 78

Query: 224 AILSVNGEDLREATHDEAVKALKRAGK-------LVELEVKYLREVTP 264
            +++VNGE L   ++ EA++ L+R+         +++L +  LR   P
Sbjct: 79  QLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVI--LRRSGP 124

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 99.1 bits (247), Expect = 8e-25
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 4/80 (5%)

Query: 29  TENNGLGISIKGGKENK----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
           + + GLG+S+KG K  +    + I I  I  G AA +  +L + D +++VNGE L   ++
Sbjct: 34  SGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSN 93

Query: 85  DEAVKALKRAGKVVELEVGV 104
            EA++ L+R+  +     G+
Sbjct: 94  HEAMETLRRSMSMEGNIRGM 113

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score =  104 bits (261), Expect = 1e-26
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 10/99 (10%)

Query: 169 DSVENQKRIIR-VKKSENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQ 218
           D +    R +R  K      LG  I+ G          E    I IS++  G  A  T  
Sbjct: 24  DILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGL 83

Query: 219 LYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK 257
           L V D +L VNG ++   + D+    +    + + + V+
Sbjct: 84  LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVR 122

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 98.8 bits (246), Expect = 1e-24
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 9/86 (10%)

Query: 26  YKYTENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNG 76
            KY     LG  I+ G          E    I IS++  G  A  T  L V D +L VNG
Sbjct: 36  CKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNG 95

Query: 77  EDLREATHDEAVKALKRAGKVVELEV 102
            ++   + D+    +    + + + V
Sbjct: 96  IEVSGKSLDQVTDMMIANSRNLIITV 121

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score =  103 bits (258), Expect = 1e-26
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 3/89 (3%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
             + V  +     G  I GG++   PI+++K+ +   A+    L  GD I+++NG+    
Sbjct: 6   SGLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEA-ADLRPGDIIVAINGQSAEN 64

Query: 236 ATHDEAVKALKRAGKLVELEVKYLREVTP 264
             H EA   ++++   + L++   R   P
Sbjct: 65  MLHAEAQSKIRQSASPLRLQLD--RSSGP 91

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 97.4 bits (243), Expect = 1e-24
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 29  TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
                 G  I GG++   PI+++K+ +   A+    L  GD I+++NG+      H EA 
Sbjct: 13  AGPAPWGFRISGGRDFHTPIIVTKVTERGKAEA-ADLRPGDIIVAINGQSAENMLHAEAQ 71

Query: 89  KALKRAGKVVELEV 102
             ++++   + L++
Sbjct: 72  SKIRQSASPLRLQL 85

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score =  104 bits (260), Expect = 2e-26
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 4/112 (3%)

Query: 150 LNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGK---ENKMPILISK 206
           LNS+T  + S+   +    +S           +  + GLG S++GGK       P+ I++
Sbjct: 4   LNSSTDSAASASAASDVSVESTAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINR 63

Query: 207 IFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK-LVELEVK 257
           IFKG A++Q+E +  GD IL + G  ++  T  EA   +K      V + ++
Sbjct: 64  IFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIR 115

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 99.1 bits (247), Expect = 1e-24
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 30  ENNGLGISIKGGK---ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
            + GLG S++GGK       P+ I++IFKG A++Q+E +  GD IL + G  ++  T  E
Sbjct: 38  MSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFE 97

Query: 87  AVKALKRAGK-VVELEV 102
           A   +K      V + +
Sbjct: 98  AWNIIKALPDGPVTIVI 114

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score =  103 bits (258), Expect = 2e-26
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
           + + K     LG+S+     N++   I+ + +G   +   +L  GD I   NG+ L    
Sbjct: 6   VDLMKKAGKELGLSLSP---NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP 62

Query: 238 HDEAVKALKRAGKLVELEVKYLREVTP 264
                   K A   V +EV   +  + 
Sbjct: 63  FQVCYALFKGANGKVSMEVTRPKPGSG 89

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 97.1 bits (242), Expect = 2e-24
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
               LG+S+     N++   I+ + +G   +   +L  GD I   NG+ L          
Sbjct: 12  AGKELGLSLSP---NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYA 68

Query: 90  ALKRAGKVVELEVG 103
             K A   V +EV 
Sbjct: 69  LFKGANGKVSMEVT 82

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score =  101 bits (255), Expect = 3e-26
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 5/79 (6%)

Query: 30  ENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
              GLG SI GG  N        I I+KI +G AA +  +L +GD +L+VN  +L++  H
Sbjct: 12  GPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRH 71

Query: 85  DEAVKALKRAGKVVELEVG 103
           +EAV +LK    +V L+V 
Sbjct: 72  EEAVASLKNTSDMVYLKVA 90

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score =  101 bits (254), Expect = 4e-26
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 6/85 (7%)

Query: 178 IRVKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGED 232
           + + K    GLG SI GG  N        I I+KI +G AA +  +L +GD +L+VN  +
Sbjct: 7   VNLLK-GPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTN 65

Query: 233 LREATHDEAVKALKRAGKLVELEVK 257
           L++  H+EAV +LK    +V L+V 
Sbjct: 66  LQDVRHEEAVASLKNTSDMVYLKVA 90

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score =  102 bits (256), Expect = 3e-26
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 12/100 (12%)

Query: 172 ENQKRIIRVKKSENNGLGISIKGG--------KENKMPILISKIFKGMAADQTEQLYVGD 223
           E  K+ IRV+  ++  LG SI GG        + +   I ++++     A +   L  GD
Sbjct: 7   ELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGD 64

Query: 224 AILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263
            I+  NG       H +AV  LK     VEL +   REV+
Sbjct: 65  KIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV--REVS 102

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 92.9 bits (231), Expect = 6e-23
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 10/81 (12%)

Query: 30  ENNGLGISIKGG--------KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 81
           ++  LG SI GG        + +   I ++++     A +   L  GD I+  NG     
Sbjct: 19  KDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFIN 76

Query: 82  ATHDEAVKALKRAGKVVELEV 102
             H +AV  LK     VEL +
Sbjct: 77  IEHGQAVSLLKTFQNTVELII 97

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score =  102 bits (256), Expect = 6e-26
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
           P  ++ +    +++KS   G G ++ GG E    + I  +     A    ++  GD I+S
Sbjct: 12  PSELKGKFIHTKLRKSSR-GFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVS 70

Query: 228 VNGEDLREATHDEAVKALKRA--GKLVELEVK 257
           VN   +   TH + VK  +    G  V+LE+ 
Sbjct: 71  VNDTCVLGHTHAQVVKIFQSIPIGASVDLELC 102

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 99.5 bits (248), Expect = 7e-25
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 31  NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
           + G G ++ GG E    + I  +     A    ++  GD I+SVN   +   TH + VK 
Sbjct: 28  SRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKI 87

Query: 91  LKRA--GKVVELEVGVGY 106
            +    G  V+LE+  GY
Sbjct: 88  FQSIPIGASVDLELCRGY 105

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score =  101 bits (253), Expect = 7e-26
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           R+I+ +K     +GI +K     K    +++I  G    +   L+VGD IL +NG ++  
Sbjct: 14  RLIQFEKVTEEPMGICLKLN--EKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTN 71

Query: 236 ATHDEAVKALKRAGKLVELEV 256
            + D+  KA+K    ++ L+V
Sbjct: 72  HSVDQLQKAMKETKGMISLKV 92

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 92.0 bits (229), Expect = 1e-22
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 29  TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
                +GI +K     K    +++I  G    +   L+VGD IL +NG ++   + D+  
Sbjct: 21  VTEEPMGICLKLN--EKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQ 78

Query: 89  KALKRAGKVVELEV 102
           KA+K    ++ L+V
Sbjct: 79  KAMKETKGMISLKV 92

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score =  101 bits (253), Expect = 7e-26
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 167 IPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAIL 226
           IP +   +K  + + K     LG+S+     N++   I+ + +G   +   +L  GD I 
Sbjct: 2   IPRN-SLEKFNVDLMKKAGKELGLSLSP---NEIGCTIADLIQGQYPEIDSKLQRGDIIT 57

Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
             NG+ L       +    K A   V +EV   +    
Sbjct: 58  KFNGDALEGLPFQVSYALFKGANGKVSMEVTRPKPAAA 95

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 93.1 bits (232), Expect = 5e-23
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
               LG+S+     N++   I+ + +G   +   +L  GD I   NG+ L       +  
Sbjct: 18  AGKELGLSLSP---NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYA 74

Query: 90  ALKRAGKVVELEVG 103
             K A   V +EV 
Sbjct: 75  LFKGANGKVSMEVT 88

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score =  100 bits (251), Expect = 9e-26
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 180 VKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
           V  +     G  ++GGK+  MP+ IS+I  G  A Q+ QL  GD +++++G +    TH 
Sbjct: 5   VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHL 63

Query: 240 EAVKALKRAGKLVELEVKYLR 260
           EA   +K A   + L ++  +
Sbjct: 64  EAQNKIKSASYNLSLTLQKSK 84

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 96.2 bits (240), Expect = 3e-24
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 29  TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
           T     G  ++GGK+  MP+ IS+I  G  A Q+ QL  GD +++++G +    TH EA 
Sbjct: 8   TGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHLEAQ 66

Query: 89  KALKRAGKVVELEV 102
             +K A   + L +
Sbjct: 67  NKIKSASYNLSLTL 80

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score =  100 bits (251), Expect = 1e-25
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 184 ENNGLGISIKGGKENK----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
              GLGI+I G   +K      I +  I K  A +   ++ +GD I++V+G +L+  T+ 
Sbjct: 13  NVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQ 72

Query: 240 EAVKALKRAGKLVELEVKYLREVT 263
           +AV+ L+  G+ V L +    E +
Sbjct: 73  QAVEVLRHTGQTVLLTLMRRGETS 96

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 99.6 bits (249), Expect = 2e-25
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 30  ENNGLGISIKGGKENK----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
              GLGI+I G   +K      I +  I K  A +   ++ +GD I++V+G +L+  T+ 
Sbjct: 13  NVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQ 72

Query: 86  EAVKALKRAGKVVELEV 102
           +AV+ L+  G+ V L +
Sbjct: 73  QAVEVLRHTGQTVLLTL 89

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score =  100 bits (252), Expect = 2e-25
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
              ++       +KK  N G G +I GG E    + +  +     A Q  ++  GD I+ 
Sbjct: 13  ASQLKGTFLSTTLKK-SNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVY 71

Query: 228 VNGEDLREATHDEAVKALKRA--GKLVELEVK 257
           +N   +   TH + VK  +    G+ V L + 
Sbjct: 72  INEVCVLGHTHADVVKLFQSVPIGQSVNLVLC 103

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 98.6 bits (246), Expect = 1e-24
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
            N G G +I GG E    + +  +     A Q  ++  GD I+ +N   +   TH + VK
Sbjct: 28  SNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVK 87

Query: 90  ALKRA--GKVVELEVGVGY 106
             +    G+ V L +  GY
Sbjct: 88  LFQSVPIGQSVNLVLCRGY 106

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 99.4 bits (248), Expect = 3e-25
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 12/96 (12%)

Query: 176 RIIRVKKSENNGLGISIKGG--------KENKMPILISKIFKGMAADQTEQLYVGDAILS 227
             IRV+  ++  LG SI GG        + +   I ++++     A +   L  GD I+ 
Sbjct: 3   MEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQ 60

Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263
            NG       H +AV  LK     VEL +   REV+
Sbjct: 61  ANGYSFINIEHGQAVSLLKTFQNTVELIIV--REVS 94

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 92.5 bits (230), Expect = 7e-23
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 10/81 (12%)

Query: 30  ENNGLGISIKGG--------KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 81
           ++  LG SI GG        + +   I ++++     A +   L  GD I+  NG     
Sbjct: 11  KDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFIN 68

Query: 82  ATHDEAVKALKRAGKVVELEV 102
             H +AV  LK     VEL +
Sbjct: 69  IEHGQAVSLLKTFQNTVELII 89

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score =  100 bits (250), Expect = 3e-25
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKE-NKMPILISKIFKGMAADQTEQLYVGDAIL 226
              +  +  II ++K + NGLG+S+ G K+ ++M I +  I     A    ++ +GD +L
Sbjct: 19  YADLPGELHIIELEK-DKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELL 77

Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
            +N + L   +H  A   +K A   V+L      +   
Sbjct: 78  EINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVN 115

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 95.2 bits (237), Expect = 2e-23
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 30  ENNGLGISIKGGKE-NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
           + NGLG+S+ G K+ ++M I +  I     A    ++ +GD +L +N + L   +H  A 
Sbjct: 34  DKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNAS 93

Query: 89  KALKRAGKVVELEV 102
             +K A   V+L  
Sbjct: 94  AIIKTAPSKVKLVF 107

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 98.5 bits (246), Expect = 4e-25
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
           + V  +     G  I GG++   PI+++K+ +   A     L  GD I+++NGE      
Sbjct: 4   LTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKD-ADLRPGDIIVAINGESAEGML 62

Query: 238 HDEAVKALKRAGKLVELEVK 257
           H EA   ++++   + L++ 
Sbjct: 63  HAEAQSKIRQSPSPLRLQLD 82

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 95.4 bits (238), Expect = 6e-24
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 33  GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
             G  I GG++   PI+++K+ +   A     L  GD I+++NGE      H EA   ++
Sbjct: 13  PWGFRITGGRDFHTPIMVTKVAERGKAKD-ADLRPGDIIVAINGESAEGMLHAEAQSKIR 71

Query: 93  RAGKVVELEV 102
           ++   + L++
Sbjct: 72  QSPSPLRLQL 81

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 99.5 bits (248), Expect = 7e-25
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 147 NGTLNSNTVDSISSFMDTVDIP-DSVENQKRIIRVKKSENNGLGISIKGGKENK---MPI 202
           +   + + V    S      I    +  + +   V +     LG+ + GGK  +   +  
Sbjct: 8   HSHSDKHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCA 67

Query: 203 LISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREV 262
            I+K+ KG  AD    L  GD +L  NG  L+ AT +E    +  +    ++E+   R  
Sbjct: 68  FITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSG 127

Query: 263 TP 264
             
Sbjct: 128 PS 129

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 94.5 bits (235), Expect = 4e-23
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 19  RDFYSENYKYTENNGLGISIKGGKENK---MPILISKIFKGMAADQTEQLYVGDAILSVN 75
           +     +        LG+ + GGK  +   +   I+K+ KG  AD    L  GD +L  N
Sbjct: 35  KRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWN 94

Query: 76  GEDLREATHDEAVKALKRAGK--VVELEV 102
           G  L+ AT +E    +  +     VEL V
Sbjct: 95  GRLLQGATFEEVYNIILESKPEPQVELVV 123

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 97.8 bits (244), Expect = 8e-25
 Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           R+++ +K+ +  +GI++K  + N    ++++I  G    +   L+VGD I  +NG  +  
Sbjct: 3   RLVQFQKNTDEPMGITLKMNELN--HCIVARIMHGGMIHRQGTLHVGDEIREINGISVAN 60

Query: 236 ATHDEAVKALKRAGKLVELEV 256
            T ++  K L+     +  ++
Sbjct: 61  QTVEQLQKMLREMRGSITFKI 81

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 88.9 bits (221), Expect = 1e-21
 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
            +  +GI++K  + N    ++++I  G    +   L+VGD I  +NG  +   T ++  K
Sbjct: 11  TDEPMGITLKMNELN--HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQK 68

Query: 90  ALKRAGKVVELEVGVGY 106
            L+     +  ++   Y
Sbjct: 69  MLREMRGSITFKIVPSY 85

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 98.3 bits (245), Expect = 1e-24
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 178 IRVKKSENNGLGISIKGGKENK--MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           + +   + N LGISI G    +    I I  I KG A     ++  GD +L VN  +   
Sbjct: 9   VTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFEN 68

Query: 236 ATHDEAVKALKRAGK---LVELEV 256
            ++D+AV+ L+        + L V
Sbjct: 69  MSNDDAVRVLRDIVHKPGPIVLTV 92

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 93.3 bits (232), Expect = 6e-23
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 30  ENNGLGISIKGGKENK--MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
           + N LGISI G    +    I I  I KG A     ++  GD +L VN  +    ++D+A
Sbjct: 15  KYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDA 74

Query: 88  VKALKRAGK---VVELEVG 103
           V+ L+        + L V 
Sbjct: 75  VRVLRDIVHKPGPIVLTVA 93

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 98.2 bits (245), Expect = 1e-24
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 3/101 (2%)

Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
                    + +   + +GLG  I GGK     +++  I  G  AD+  +L  GD IL +
Sbjct: 10  TVCWGHVEEVELIN-DGSGLGFGIVGGKT--SGVVVRTIVPGGLADRDGRLQTGDHILKI 66

Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKA 269
            G +++  T ++  + L+  G  V + V             
Sbjct: 67  GGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSG 107

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 94.7 bits (236), Expect = 2e-23
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
           + +GLG  I GGK     +++  I  G  AD+  +L  GD IL + G +++  T ++  +
Sbjct: 24  DGSGLGFGIVGGKT--SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQ 81

Query: 90  ALKRAGKVVELEVG 103
            L+  G  V + V 
Sbjct: 82  VLRNCGNSVRMLVA 95

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 99.0 bits (246), Expect = 1e-24
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 16/119 (13%)

Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKEN------------KMPILISKIFKGMAADQT 216
            S+  +  I ++++ EN  LG SI GG +                I ++++ +G  A+  
Sbjct: 21  QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEI- 79

Query: 217 EQLYVGDAILSVNGEDLREATHDEAVKALKRAGK-LVELEVKYLREVTPYFRKASIISE 274
             L +GD I+ VNG D+   THD+A K L +  + +V L V   R+      + S++SE
Sbjct: 80  AGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVT--RQSLQKAVQQSMLSE 136

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 85.9 bits (212), Expect = 7e-20
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 14/86 (16%)

Query: 30  ENNGLGISIKGGKEN------------KMPILISKIFKGMAADQTEQLYVGDAILSVNGE 77
           EN  LG SI GG +                I ++++ +G  A+    L +GD I+ VNG 
Sbjct: 36  ENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEI-AGLQIGDKIMQVNGW 94

Query: 78  DLREATHDEAVKALKRAGK-VVELEV 102
           D+   THD+A K L +  + VV L V
Sbjct: 95  DMTMVTHDQARKRLTKRSEEVVRLLV 120

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 97.4 bits (243), Expect = 1e-24
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 177 IIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 236
             ++        G  + GGK+ + P+ IS++  G  A     L +GD I +++GE+    
Sbjct: 4   TQQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNM 62

Query: 237 THDEAVKALKRAGKLVELEVK 257
           TH EA   +K     + L V 
Sbjct: 63  THLEAQNRIKGCTDNLTLTVA 83

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 92.8 bits (231), Expect = 6e-23
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 29  TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
                 G  + GGK+ + P+ IS++  G  A     L +GD I +++GE+    TH EA 
Sbjct: 10  QGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQ 68

Query: 89  KALKRAGKVVELEV 102
             +K     + L V
Sbjct: 69  NRIKGCTDNLTLTV 82

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 97.3 bits (243), Expect = 1e-24
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 6/90 (6%)

Query: 178 IRVKKSENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
           + + K  +N LGIS+ GG         I +  +    AA+   +++ GD +L+VNG  L 
Sbjct: 9   VELAK-NDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLE 67

Query: 235 EATHDEAVKALKRAGKLVELEVKYLREVTP 264
            ATH +AV+ L+  G++V L ++  +  +P
Sbjct: 68  GATHKQAVETLRNTGQVVHLLLE--KGQSP 95

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 97.3 bits (243), Expect = 2e-24
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 30  ENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
            +N LGIS+ GG         I +  +    AA+   +++ GD +L+VNG  L  ATH +
Sbjct: 14  NDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQ 73

Query: 87  AVKALKRAGKVVELEVG 103
           AV+ L+  G+VV L + 
Sbjct: 74  AVETLRNTGQVVHLLLE 90

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 96.6 bits (241), Expect = 2e-24
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 31  NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
           + G G ++ GG E    + I  +     A    ++  GD I+SVN   +   TH + VK 
Sbjct: 10  SRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKI 69

Query: 91  LKRA--GKVVELEV 102
            +    G  V+LE+
Sbjct: 70  FQSIPIGASVDLEL 83

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 96.6 bits (241), Expect = 2e-24
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
            +++KS   G G ++ GG E    + I  +     A    ++  GD I+SVN   +   T
Sbjct: 4   TKLRKSSR-GFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHT 62

Query: 238 HDEAVKALKRA--GKLVELEVK 257
           H + VK  +    G  V+LE+ 
Sbjct: 63  HAQVVKIFQSIPIGASVDLELC 84

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 97.9 bits (244), Expect = 3e-24
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 9/117 (7%)

Query: 157 SISSFMDTVDIPDSVEN-----QKRIIRVKKSENNGLGISIKGGKE---NKMPILISKIF 208
           S SS +   D    ++      Q   I +++    GLG S+   +     K+ I +  + 
Sbjct: 3   SGSSGLGNEDFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQ 62

Query: 209 KGMAADQTEQLYVGDAILSVNGEDLRE-ATHDEAVKALKRAGKLVELEVKYLREVTP 264
            G  AD+ ++L   D IL++N   L +  +H +A+  L++    + L V      T 
Sbjct: 63  PGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTK 119

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 90.6 bits (225), Expect = 8e-22
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 30  ENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE-ATHD 85
              GLG S+   +     K+ I +  +  G  AD+ ++L   D IL++N   L +  +H 
Sbjct: 35  STGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQ 94

Query: 86  EAVKALKRAGKVVELEVG 103
           +A+  L++    + L V 
Sbjct: 95  QAIALLQQTTGSLRLIVA 112

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 95.8 bits (239), Expect = 5e-24
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
             V        G  ++GGK+  MP+ IS +  G  A Q   + +GD +LS++G + +  T
Sbjct: 5   YSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQ-ANVRIGDVVLSIDGINAQGMT 63

Query: 238 HDEAVKALKRAGKLVELEVK 257
           H EA   +K     + + ++
Sbjct: 64  HLEAQNKIKGCTGSLNMTLQ 83

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 91.6 bits (228), Expect = 1e-22
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 33  GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
             G  ++GGK+  MP+ IS +  G  A Q   + +GD +LS++G + +  TH EA   +K
Sbjct: 14  PWGFRLQGGKDFNMPLTISSLKDGGKAAQ-ANVRIGDVVLSIDGINAQGMTHLEAQNKIK 72

Query: 93  RAGKVVELEV 102
                + + +
Sbjct: 73  GCTGSLNMTL 82

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 95.5 bits (238), Expect = 6e-24
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
            +V        G  ++GGK+  +P+ IS++  G  A Q   + VGD +LS++GE+    T
Sbjct: 5   FKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLT 63

Query: 238 HDEAVKALKRAGKLVELEVK 257
           H EA   ++  G+ + L + 
Sbjct: 64  HIEAQNKIRACGERLSLGLS 83

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 92.0 bits (229), Expect = 9e-23
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 33  GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
             G  ++GGK+  +P+ IS++  G  A Q   + VGD +LS++GE+    TH EA   ++
Sbjct: 14  PWGFRLQGGKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIR 72

Query: 93  RAGKVVELEV 102
             G+ + L +
Sbjct: 73  ACGERLSLGL 82

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 95.5 bits (238), Expect = 9e-24
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
             V        G  + GG +   P++I++I  G  A     L  GD IL+++G      T
Sbjct: 7   GNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAA-NLCPGDVILAIDGFGTESMT 65

Query: 238 HDEAVKALKRAGKLVELEVK 257
           H +A   +K A   + L++ 
Sbjct: 66  HADAQDRIKAASYQLCLKID 85

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 91.3 bits (227), Expect = 3e-22
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 29  TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
                 G  + GG +   P++I++I  G  A     L  GD IL+++G      TH +A 
Sbjct: 12  PGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAA-NLCPGDVILAIDGFGTESMTHADAQ 70

Query: 89  KALKRAGKVVELEV 102
             +K A   + L++
Sbjct: 71  DRIKAASYQLCLKI 84

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 95.1 bits (237), Expect = 1e-23
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 180 VKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
            ++ + + LGISI G ++         I +  +  G AA    ++   D IL V+  +++
Sbjct: 19  FREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQ 78

Query: 235 EATHDEAVKALKRAGKLVELEVK 257
                + V+ L+ AG  V L + 
Sbjct: 79  GMAQSDVVEVLRNAGNPVRLLLI 101

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 94.0 bits (234), Expect = 3e-23
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 31  NNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
            + LGISI G ++         I +  +  G AA    ++   D IL V+  +++     
Sbjct: 24  TSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQS 83

Query: 86  EAVKALKRAGKVVELEVG 103
           + V+ L+ AG  V L + 
Sbjct: 84  DVVEVLRNAGNPVRLLLI 101

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 94.7 bits (236), Expect = 2e-23
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDA 224
                     + +++   +GLG+ +  G         + I  +  G  A    +L +GD 
Sbjct: 2   SSGSSGYVFTVELER-GPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDR 60

Query: 225 ILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRK 268
           IL VNG  L    +  AV  ++  GK +   V   +      +K
Sbjct: 61  ILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVA--KSDVETAKK 102

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 92.4 bits (230), Expect = 1e-22
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 30  ENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
             +GLG+ +  G         + I  +  G  A    +L +GD IL VNG  L    +  
Sbjct: 17  GPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLR 76

Query: 87  AVKALKRAGKVVELEVG 103
           AV  ++  GK +   V 
Sbjct: 77  AVDLIRHGGKKMRFLVA 93

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 93.5 bits (233), Expect = 3e-23
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 172 ENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGE 231
                 + ++       G  + GG++   P+ IS++  G  A     L  GD I ++NGE
Sbjct: 6   SGMPHSVTLRGPS--PWGFRLVGGRDFSAPLTISRVHAGSKAALAA-LCPGDLIQAINGE 62

Query: 232 DLREATHDEAVKALKRAGKLVELEVK 257
                TH EA   +K     + L V 
Sbjct: 63  STELMTHLEAQNRIKGCHDHLTLSVS 88

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 91.9 bits (229), Expect = 1e-22
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 33  GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
             G  + GG++   P+ IS++  G  A     L  GD I ++NGE     TH EA   +K
Sbjct: 19  PWGFRLVGGRDFSAPLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIK 77

Query: 93  RAGKVVELEV 102
                + L V
Sbjct: 78  GCHDHLTLSV 87

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 97.1 bits (242), Expect = 3e-23
 Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 6/110 (5%)

Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDA 224
           S   +   I +++  N+GLG SI GG +N        I I+KI  G AA Q  +L V D+
Sbjct: 1   SGSMEYEEITLER-GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDS 59

Query: 225 ILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISE 274
           IL VN  D+RE TH  AV+ALK AG +V L V   +       +  +I  
Sbjct: 60  ILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKG 109

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 91.4 bits (227), Expect = 3e-21
 Identities = 39/78 (50%), Positives = 47/78 (60%), Gaps = 5/78 (6%)

Query: 30  ENNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
            N+GLG SI GG +N        I I+KI  G AA Q  +L V D+IL VN  D+RE TH
Sbjct: 14  GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 73

Query: 85  DEAVKALKRAGKVVELEV 102
             AV+ALK AG +V L V
Sbjct: 74  SAAVEALKEAGSIVRLYV 91

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 89.8 bits (223), Expect = 1e-20
 Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 5/79 (6%)

Query: 30  ENNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
              GLG SI GG  N+       I ++KI +G AA +  +L +GD IL+VN   L +  H
Sbjct: 109 GPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMH 168

Query: 85  DEAVKALKRAGKVVELEVG 103
           ++AV ALK    VV L+V 
Sbjct: 169 EDAVAALKNTYDVVYLKVA 187

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 89.4 bits (222), Expect = 1e-20
 Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 182 KSENNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 236
                GLG SI GG  N+       I ++KI +G AA +  +L +GD IL+VN   L + 
Sbjct: 107 IKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDV 166

Query: 237 THDEAVKALKRAGKLVELEVK 257
            H++AV ALK    +V L+V 
Sbjct: 167 MHEDAVAALKNTYDVVYLKVA 187

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 93.1 bits (232), Expect = 5e-23
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 180 VKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
            K+     LGI +     ++  + I  + +G  A Q  +L   D +L++NG DL+  T +
Sbjct: 10  HKRDSGEQLGIKLVRR-TDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPE 68

Query: 240 EAVKALKRAGKLVELEVKYLREVTP 264
            A + ++ +G+ V L +   R   P
Sbjct: 69  LAAQIIQASGERVNLTIA--RPGKP 91

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 90.4 bits (225), Expect = 4e-22
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 26  YKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
           +K      LGI +     ++  + I  + +G  A Q  +L   D +L++NG DL+  T +
Sbjct: 10  HKRDSGEQLGIKLVRR-TDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPE 68

Query: 86  EAVKALKRAGKVVELEVG 103
            A + ++ +G+ V L + 
Sbjct: 69  LAAQIIQASGERVNLTIA 86

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 92.9 bits (231), Expect = 8e-23
 Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 170 SVENQKRIIRVKKSENNGLGISIKGG--KENKMPILISKIFKGMAADQTEQLYVGDAILS 227
           S  +  R + ++K    GLG+++            +I+ +  G  A+++  L +GD + +
Sbjct: 5   SSGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTA 64

Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVKYLR 260
           +NG  L          A++       + +  + 
Sbjct: 65  INGTSLVGLPLAACQAAVRETKSQTSVTLSIVH 97

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 82.5 bits (204), Expect = 3e-19
 Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 30  ENNGLGISIKGG--KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
              GLG+++            +I+ +  G  A+++  L +GD + ++NG  L        
Sbjct: 19  RGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAAC 78

Query: 88  VKALKRAGKVVELEVGV 104
             A++       + + +
Sbjct: 79  QAAVRETKSQTSVTLSI 95

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 92.4 bits (230), Expect = 1e-22
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 186 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 245
              G  ++GGK+  MP+ IS +  G  A Q   + +GD +LS++G   +  TH EA   +
Sbjct: 15  APWGFRLQGGKDFNMPLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEAQNKI 73

Query: 246 KRAGKLVELEVKYLREVTP 264
           K     + + ++       
Sbjct: 74  KACTGSLNMTLQRASAAAK 92

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 91.3 bits (227), Expect = 2e-22
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 32  NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 91
              G  ++GGK+  MP+ IS +  G  A Q   + +GD +LS++G   +  TH EA   +
Sbjct: 15  APWGFRLQGGKDFNMPLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEAQNKI 73

Query: 92  KRAGKVVELEV 102
           K     + + +
Sbjct: 74  KACTGSLNMTL 84

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 91.7 bits (228), Expect = 2e-22
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 4/97 (4%)

Query: 163 DTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMP--ILISKIFKGMAADQTEQLY 220
            +   P   +   R+I V K    GLG+ I GG        + I ++  G    +  +L 
Sbjct: 4   GSSGSPLDRDPAFRVITVTKET--GLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLK 61

Query: 221 VGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK 257
            GD ++S+N E +   + +EA   + RA    E   +
Sbjct: 62  PGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWE 98

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 90.6 bits (225), Expect = 6e-22
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 29  TENNGLGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
           T+  GLG+ I GG        + I ++  G    +  +L  GD ++S+N E +   + +E
Sbjct: 22  TKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEE 81

Query: 87  AVKALKRAGKVVELEVGVGYGRCG 110
           A   + RA    E    + + R G
Sbjct: 82  AKSIITRAKLRSESPWEIAFIRSG 105

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 94.6 bits (235), Expect = 3e-22
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 3/98 (3%)

Query: 159 SSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQ 218
            +   TV   D  E +K  + + K     LG+S+     N++   I+ + +G   +   +
Sbjct: 98  KAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSP---NEIGCTIADLIQGQYPEIDSK 154

Query: 219 LYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEV 256
           L  GD I   NG+ L            K A   V +EV
Sbjct: 155 LQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEV 192

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 87.6 bits (217), Expect = 7e-20
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 29  TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
                LG+S+     N++   I+ + +G   +   +L  GD I   NG+ L         
Sbjct: 122 KAGKELGLSLSP---NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCY 178

Query: 89  KALKRAGKVVELEVG 103
              K A   V +EV 
Sbjct: 179 ALFKGANGKVSMEVT 193

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 78.8 bits (194), Expect = 9e-17
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 173 NQKRIIRVKKSENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAILSVNG 230
           N+K +I +K  E   +G+ + GGK N      +I+ ++        ++L + D I  +NG
Sbjct: 17  NKKILIELKV-EKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDING 75

Query: 231 EDLREA--THDEAVKALKRAGKLVELEVKYLREVTPYF 266
             +     T  +  +      +       +  +     
Sbjct: 76  TPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELE 113

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 74.5 bits (183), Expect = 2e-15
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 30  ENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA--THD 85
           E   +G+ + GGK N      +I+ ++        ++L + D I  +NG  +     T  
Sbjct: 27  EKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTL 86

Query: 86  EAVKALKRAGKVVE 99
           +  +      +   
Sbjct: 87  KVHQLFHTTYEKAV 100

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 91.8 bits (228), Expect = 3e-22
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 5/113 (4%)

Query: 152 SNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGM 211
            +     S   + +     +  +  +  VK  + + +G+ + GG +  + I ++ + +  
Sbjct: 5   HHHHHHSSGGTENLYFQGHMILRPSMKLVKFRKGDSVGLRLAGGND--VGIFVAGVLEDS 62

Query: 212 AADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GKLVELEVKYLREV 262
            A + E L  GD IL VN  D      +EAV  L     G+ V +  +  ++V
Sbjct: 63  PAAK-EGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDV 114

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 87.2 bits (216), Expect = 1e-20
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 9   GPTEAFFFSSRDFYSENYKYTE---NNGLGISIKGGKENKMPILISKIFKGMAADQTEQL 65
           G TE  +F        + K  +    + +G+ + GG +  + I ++ + +   A + E L
Sbjct: 13  GGTENLYFQGHMILRPSMKLVKFRKGDSVGLRLAGGND--VGIFVAGVLEDSPAAK-EGL 69

Query: 66  YVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGR 108
             GD IL VN  D      +EAV  L    K  E+ +     +
Sbjct: 70  EEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 112

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 90.6 bits (225), Expect = 4e-22
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVN 229
           S++  ++ + V KSE+  LG++I           I +I  G   D  + + VGD I S+N
Sbjct: 1   SMKGIEKEVNVYKSED-SLGLTITDNGV--GYAFIKRIKDGGVIDSVKTICVGDHIESIN 57

Query: 230 GEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYF 266
           GE++    H +  K LK   K     +K +       
Sbjct: 58  GENIVGWRHYDVAKKLKELKKEELFTMKLIEPKKSSE 94

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 80.9 bits (200), Expect = 8e-19
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
             + LG++I           I +I  G   D  + + VGD I S+NGE++    H +  K
Sbjct: 14  SEDSLGLTITDNGV--GYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAK 71

Query: 90  ALK--RAGKVVELEV 102
            LK  +  ++  +++
Sbjct: 72  KLKELKKEELFTMKL 86

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 90.9 bits (226), Expect = 4e-22
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 172 ENQKRIIRVKKSENNGLGISIKGGKE----NKMPILISKIFKGMAADQTEQLYVGDAILS 227
             + +I+ + K    GLG SI   ++     +  I+I  +     A+++  L  GD ++S
Sbjct: 13  SPEVKIVELVKD-CKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVS 71

Query: 228 VNGEDLREATHDEAVKALKRAGK-LVELEVKY 258
           VN   L   +  EAV+ LK     LV L +  
Sbjct: 72  VNEYCLDNTSLAEAVEILKAVPPGLVHLGICS 103

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 89.4 bits (222), Expect = 1e-21
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 30  ENNGLGISIKGGKE----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
           +  GLG SI   ++     +  I+I  +     A+++  L  GD ++SVN   L   +  
Sbjct: 24  DCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLA 83

Query: 86  EAVKALKRAGK-VVELEV 102
           EAV+ LK     +V L +
Sbjct: 84  EAVEILKAVPPGLVHLGI 101

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 88.5 bits (220), Expect = 3e-21
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 4/97 (4%)

Query: 172 ENQKRIIRVKKSENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSV 228
             ++  I++KK    GLG SI           PI +  I    AA Q  +L  GD ++ V
Sbjct: 9   VGKRLNIQLKK-GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 67

Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPY 265
           NG DL   + +E V  L+       + +   R+   +
Sbjct: 68  NGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAF 104

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 85.1 bits (211), Expect = 4e-20
 Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 30  ENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
              GLG SI           PI +  I    AA Q  +L  GD ++ VNG DL   + +E
Sbjct: 20  GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEE 79

Query: 87  AVKALKRAGK--VVELEVG 103
            V  L+       V L V 
Sbjct: 80  VVSLLRSTKMEGTVSLLVF 98

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 87.8 bits (218), Expect = 5e-21
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 184 ENNGLGISI-----KGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
            +N LGIS+     KGG         I +  +    AA+   +++ GD +L+VNG  L  
Sbjct: 18  NDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 77

Query: 236 ATHDEAVKALKRAGKLVELEVKYLREVTPYFRK 268
           ATH +AV+ L+  G++V L ++  +  +P  ++
Sbjct: 78  ATHKQAVETLRNTGQVVHLLLE--KGQSPTSKE 108

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 87.8 bits (218), Expect = 5e-21
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 8/82 (9%)

Query: 30  ENNGLGISI-----KGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 81
            +N LGIS+     KGG         I +  +    AA+   +++ GD +L+VNG  L  
Sbjct: 18  NDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 77

Query: 82  ATHDEAVKALKRAGKVVELEVG 103
           ATH +AV+ L+  G+VV L + 
Sbjct: 78  ATHKQAVETLRNTGQVVHLLLE 99

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 87.8 bits (218), Expect = 5e-21
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 30  ENNGLGISIKGG------KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
           + +GLGISI G          K+ I +  + +G AA +  ++ V D I+ V+G  L   T
Sbjct: 18  DEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVT 77

Query: 84  HDEAVKALKRAGKVVELEVG 103
            + A   L+     V   +G
Sbjct: 78  QNFAATVLRNTKGNVRFVIG 97

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 87.0 bits (216), Expect = 8e-21
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 184 ENNGLGISIKGG------KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
           + +GLGISI G          K+ I +  + +G AA +  ++ V D I+ V+G  L   T
Sbjct: 18  DEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVT 77

Query: 238 HDEAVKALKRAGKLVELEVKYLREVTP 264
            + A   L+     V   +   +   P
Sbjct: 78  QNFAATVLRNTKGNVRFVIGREKPSGP 104

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 86.7 bits (215), Expect = 2e-20
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 30  ENNGLGISIKGGK------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
           ++ GLGISI G          K+ I +  + +G AA +  ++ V D ++ V+G  L   T
Sbjct: 13  DSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVT 72

Query: 84  HDEAVKALKRAGKVVELEVG 103
              A   L+     V   +G
Sbjct: 73  QSFAASVLRNTKGRVRFMIG 92

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 85.9 bits (213), Expect = 3e-20
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 7/97 (7%)

Query: 184 ENNGLGISIKGGK------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
           ++ GLGISI G          K+ I +  + +G AA +  ++ V D ++ V+G  L   T
Sbjct: 13  DSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVT 72

Query: 238 HDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISE 274
              A   L+     V   +            A +I +
Sbjct: 73  QSFAASVLRNTKGRVRFMIGR-ERPGEQSEVAQLIQQ 108

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 86.0 bits (213), Expect = 2e-20
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 172 ENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGE 231
           ++  R IR    E   LG +++G      P+ +  +    +A        GD I+S+   
Sbjct: 21  QSMPRSIRFTAEEG-DLGFTLRGNA----PVQVHFLDPYCSASV-AGAREGDYIVSIQLV 74

Query: 232 DLREATHDEAVKALKRAGK-LVELEVKYLREVTPY 265
           D +  T  E +K LK  G+  +E++V  L +   +
Sbjct: 75  DCKWLTLSEVMKLLKSFGEDEIEMKVVSLLDEVTF 109

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 77.5 bits (191), Expect = 2e-17
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
           E   LG +++G      P+ +  +    +A        GD I+S+   D +  T  E +K
Sbjct: 32  EEGDLGFTLRGNA----PVQVHFLDPYCSASV-AGAREGDYIVSIQLVDCKWLTLSEVMK 86

Query: 90  ALKRAGK-VVELEV 102
            LK  G+  +E++V
Sbjct: 87  LLKSFGEDEIEMKV 100

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 85.6 bits (212), Expect = 3e-20
 Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGK-------ENKMPILISKIFKGMAADQTEQLYV 221
           D   +Q++++ V+K +N   G  I+  +        ++M  LI KI +   A     L  
Sbjct: 10  DFSWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCA-GLQA 68

Query: 222 GDAILSVNGEDLREATHDEAVKALKRAGKLVELEV 256
           GD + ++NG      T+ + V  ++ +G L+ +E 
Sbjct: 69  GDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 76.0 bits (187), Expect = 6e-17
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 8/81 (9%)

Query: 29  TENNGLGISIKGGK-------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 81
            +N   G  I+  +        ++M  LI KI +   A     L  GD + ++NG     
Sbjct: 24  QDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCA-GLQAGDVLANINGVSTEG 82

Query: 82  ATHDEAVKALKRAGKVVELEV 102
            T+ + V  ++ +G ++ +E 
Sbjct: 83  FTYKQVVDLIRSSGNLLTIET 103

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 84.7 bits (210), Expect = 4e-20
 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 4/104 (3%)

Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVN 229
           S  +  R++ +KK  +NG G  ++ G E +   +I  I  G  A+    L   D +++VN
Sbjct: 2   SSGSSGRVVVIKK-GSNGYGFYLRAGPE-QKGQIIKDIEPGSPAEAA-GLKNNDLVVAVN 58

Query: 230 GEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIIS 273
           G+ +    HD  V+ +++ G    L V   +E    +  +   S
Sbjct: 59  GKSVEALDHDGVVEMIRKGGDQTTLLVLD-KEAESIYSLSGPSS 101

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 76.6 bits (189), Expect = 4e-17
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
            +NG G  ++ G E +   +I  I  G  A+    L   D +++VNG+ +    HD  V+
Sbjct: 15  GSNGYGFYLRAGPE-QKGQIIKDIEPGSPAEAA-GLKNNDLVVAVNGKSVEALDHDGVVE 72

Query: 90  ALKRAGKVVELEV 102
            +++ G    L V
Sbjct: 73  MIRKGGDQTTLLV 85

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 84.4 bits (209), Expect = 5e-20
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           R++ ++K+    LG++ +        ++I++I  G    Q   L+VGD I  VNG+ +  
Sbjct: 8   RMVGIRKTAGEHLGVTFRVEGG---ELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGS 64

Query: 236 ATHDEAVKALKRAGKLVELEV 256
                  + L+ A   V L++
Sbjct: 65  -DPRALQELLRNASGSVILKI 84

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 74.8 bits (184), Expect = 1e-16
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
               LG++ +        ++I++I  G    Q   L+VGD I  VNG+ +         +
Sbjct: 16  AGEHLGVTFRVEGG---ELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGS-DPRALQE 71

Query: 90  ALKRAGKVVELEV 102
            L+ A   V L++
Sbjct: 72  LLRNASGSVILKI 84

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 84.8 bits (210), Expect = 9e-20
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 174 QKRIIRVKKSENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNG 230
           ++  I++KK    GLG SI           PI +  I    AA Q  +L  GD ++ VNG
Sbjct: 30  KRLNIQLKK-GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNG 88

Query: 231 EDLREATHDEAVKALKRAGKLVELEVKYLRE 261
            DL   + +E V  L+       + +   R+
Sbjct: 89  VDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 84.0 bits (208), Expect = 1e-19
 Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 30  ENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
              GLG SI           PI +  I    AA Q  +L  GD ++ VNG DL   + +E
Sbjct: 39  GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEE 98

Query: 87  AVKALKRAGK--VVELEVG 103
            V  L+       V L V 
Sbjct: 99  VVSLLRSTKMEGTVSLLVF 117

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 83.5 bits (207), Expect = 1e-19
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
           Q R++ +KK  +NG G  ++ G E +   +I  I  G  A+    L   D +++VNG+ +
Sbjct: 5   QPRVVVIKKG-SNGYGFYLRAGPE-QKGQIIKDIEPGSPAEAA-GLKNNDLVVAVNGKSV 61

Query: 234 REATHDEAVKALKRAGKLVELEVKYLREVTPY 265
               HD  V+ +++ G    L V       P+
Sbjct: 62  EALDHDGVVEMIRKGGDQTTLLVLDKELERPH 93

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 75.4 bits (186), Expect = 8e-17
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
            +NG G  ++ G E +   +I  I  G  A+    L   D +++VNG+ +    HD  V+
Sbjct: 14  GSNGYGFYLRAGPE-QKGQIIKDIEPGSPAEAA-GLKNNDLVVAVNGKSVEALDHDGVVE 71

Query: 90  ALKRAGKVVELEV 102
            +++ G    L V
Sbjct: 72  MIRKGGDQTTLLV 84

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 86.2 bits (213), Expect = 1e-19
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 30  ENNGLGISIKGGK------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
           ++ GLGISI G          K+ I +  + +G AA +  ++ V D ++ V+G  L   T
Sbjct: 89  DSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVT 148

Query: 84  HDEAVKALKRAGKVVELEVG 103
              A   L+     V   +G
Sbjct: 149 QSFAASVLRNTKGRVRFMIG 168

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 85.0 bits (210), Expect = 3e-19
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 166 DIPDSVENQKRIIRVKKSENNGLGISIKGGK------ENKMPILISKIFKGMAADQTEQL 219
           ++   VE  +      + ++ GLGISI G          K+ I +  + +G AA +  ++
Sbjct: 71  ELEKRVERLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRI 130

Query: 220 YVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK 257
            V D ++ V+G  L   T   A   L+     V   + 
Sbjct: 131 QVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIG 168

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 83.2 bits (206), Expect = 2e-19
 Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 3/105 (2%)

Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
                Q R+  + K E    G S+K  +  K  + ++ I     A +   +   D ++ V
Sbjct: 3   SGSSGQPRLCYLVK-EGGSYGFSLKTVQ-GKKGVYMTDITPQGVAMRAG-VLADDHLIEV 59

Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIIS 273
           NGE++ +A+H+E V+ +K++G  V   +        +  + S  S
Sbjct: 60  NGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDKRHVEQKSGPS 104

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 76.7 bits (189), Expect = 4e-17
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
           E    G S+K  +  K  + ++ I     A +   +   D ++ VNGE++ +A+H+E V+
Sbjct: 17  EGGSYGFSLKTVQ-GKKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVE 74

Query: 90  ALKRAGKVVELEV 102
            +K++G  V   +
Sbjct: 75  KVKKSGSRVMFLL 87

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 82.0 bits (203), Expect = 3e-19
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 2/78 (2%)

Query: 181 KKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 240
           K S     G S+  G   +  + +  I      D    L   D +L VN    R+     
Sbjct: 14  KDSGMEDFGFSVADGL-LEKGVYVKNIRPAGPGDLG-GLKPYDRLLQVNHVRTRDFDCCL 71

Query: 241 AVKALKRAGKLVELEVKY 258
            V  +  +G  ++L +  
Sbjct: 72  VVPLIAESGNKLDLVISR 89

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 80.9 bits (200), Expect = 8e-19
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 26  YKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
           YK +     G S+  G   +  + +  I      D    L   D +L VN    R+    
Sbjct: 13  YKDSGMEDFGFSVADGL-LEKGVYVKNIRPAGPGDLG-GLKPYDRLLQVNHVRTRDFDCC 70

Query: 86  EAVKALKRAGKVVELEV 102
             V  +  +G  ++L +
Sbjct: 71  LVVPLIAESGNKLDLVI 87

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 81.2 bits (201), Expect = 6e-19
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           R+  ++K  N G G  + G K   +   I  +  G  A++   L  GD ++ VNGE++ +
Sbjct: 5   RLCCLEKGPN-GYGFHLHGEKGK-LGQYIRLVEPGSPAEKA-GLLAGDRLVEVNGENVEK 61

Query: 236 ATHDEAVKALKRAGKLVELEV 256
            TH + V  ++ A   V L V
Sbjct: 62  ETHQQVVSRIRAALNAVRLLV 82

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 77.7 bits (192), Expect = 1e-17
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 31  NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
            NG G  + G K   +   I  +  G  A++   L  GD ++ VNGE++ + TH + V  
Sbjct: 13  PNGYGFHLHGEKGK-LGQYIRLVEPGSPAEKA-GLLAGDRLVEVNGENVEKETHQQVVSR 70

Query: 91  LKRAGKVVELEV 102
           ++ A   V L V
Sbjct: 71  IRAALNAVRLLV 82

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 80.9 bits (200), Expect = 8e-19
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 173 NQKRIIRVKKSENNGLGISIKGGK-------ENKMPILISKIFKGMAADQTEQLYVGDAI 225
            Q++++ ++K +N   G  I+            +M   ++++ +   A     L  GD I
Sbjct: 3   QQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLA-GLTPGDTI 61

Query: 226 LSVNGEDLREATHDEAVKALKRAGKLVELEV 256
            SVNG ++    H E V  +K +G ++ LE 
Sbjct: 62  ASVNGLNVEGIRHREIVDIIKASGNVLRLET 92

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 29  TENNGLGISIKGGK-------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 81
            +N   G  I+            +M   ++++ +   A     L  GD I SVNG ++  
Sbjct: 13  GDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLA-GLTPGDTIASVNGLNVEG 71

Query: 82  ATHDEAVKALKRAGKVVELEV 102
             H E V  +K +G V+ LE 
Sbjct: 72  IRHREIVDIIKASGNVLRLET 92

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 80.5 bits (199), Expect = 1e-18
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 4/99 (4%)

Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
                + R+  +KK  + G G ++   K +K    I  +     A+ +  L   D I+ V
Sbjct: 4   PFTMLRPRLCTMKKGPS-GYGFNLHSDK-SKPGQFIRSVDPDSPAEASG-LRAQDRIVEV 60

Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFR 267
           NG  +    H + V A++  G   +L V   RE   +F+
Sbjct: 61  NGVCMEGKQHGDVVSAIRAGGDETKLLVVD-RETDEFFK 98

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 73.5 bits (181), Expect = 4e-16
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
             +G G ++   K +K    I  +     A+ +  L   D I+ VNG  +    H + V 
Sbjct: 18  GPSGYGFNLHSDK-SKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVS 75

Query: 90  ALKRAGKVVELEV 102
           A++  G   +L V
Sbjct: 76  AIRAGGDETKLLV 88

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 81.1 bits (200), Expect = 2e-18
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 12/128 (9%)

Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
                + R+  +KK  + G G ++   K +K    I  +     A+ +  L   D I+ V
Sbjct: 4   PFTMLRPRLCTMKKGPS-GYGFNLHSDK-SKPGQFIRSVDPDSPAEASG-LRAQDRIVEV 60

Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDSP 288
           NG  +    H + V A++  G   +L V   RE   +F+K  +I              + 
Sbjct: 61  NGVCMEGKQHGDVVSAIRAGGDETKLLVVD-RETDEFFKKCRVIPSQE--------HLNG 111

Query: 289 PSPSPQSS 296
           P P P ++
Sbjct: 112 PLPVPFTN 119

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 70.7 bits (173), Expect = 8e-15
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
             +G G ++   K +K    I  +     A+ +  L   D I+ VNG  +    H + V 
Sbjct: 18  GPSGYGFNLHSDK-SKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVS 75

Query: 90  ALKRAGKVVELEV 102
           A++  G   +L V
Sbjct: 76  AIRAGGDETKLLV 88

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 80.6 bits (199), Expect = 2e-18
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
             +     R  ++ K E    G  ++  K +    LI  I +G  A++   L  GD +L 
Sbjct: 7   GMASTFNPRECKLSKQEGQNYGFFLRIEK-DTDGHLIRVIEEGSPAEKA-GLLDGDRVLR 64

Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEV 256
           +NG  + +  H + V+ ++++G  V L V
Sbjct: 65  INGVFVDKEEHAQVVELVRKSGNSVTLLV 93

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 73.3 bits (180), Expect = 6e-16
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
           E    G  ++  K +    LI  I +G  A++   L  GD +L +NG  + +  H + V+
Sbjct: 23  EGQNYGFFLRIEK-DTDGHLIRVIEEGSPAEKA-GLLDGDRVLRINGVFVDKEEHAQVVE 80

Query: 90  ALKRAGKVVELEV 102
            ++++G  V L V
Sbjct: 81  LVRKSGNSVTLLV 93

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 80.7 bits (199), Expect = 3e-18
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 6/112 (5%)

Query: 148 GTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKI 207
           G+  S+   +    +       S  N+    ++    N GLG+ +         + IS +
Sbjct: 1   GSSGSSGSKNEKEQLSKAKASVSSLNKVIQTKLTVG-NLGLGLVVIQNGP---YLQISHL 56

Query: 208 FKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK--RAGKLVELEVK 257
               AA     L  GD ++SV   ++   T  E +K L+    G +++++  
Sbjct: 57  INKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAY 108

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 78.4 bits (193), Expect = 1e-17
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
            N GLG+ +         + IS +    AA     L  GD ++SV   ++   T  E +K
Sbjct: 36  GNLGLGLVVIQNGP---YLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLK 92

Query: 90  ALK--RAGKVVELEVGVGYG 107
            L+    G V++++   G+ 
Sbjct: 93  LLQNITIGTVLQIKAYRGFL 112

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 78.8 bits (195), Expect = 3e-18
 Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 6/81 (7%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           R + V +    G G ++ G      P ++S + +G  AD    L  GD IL+VN  ++++
Sbjct: 4   RSVEVARGRA-GYGFTLSGQA----PCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKK 57

Query: 236 ATHDEAVKALKRAGKLVELEV 256
           A+H++ VK + +   ++ + +
Sbjct: 58  ASHEDVVKLIGKCSGVLHMVI 78

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 75.7 bits (187), Expect = 4e-17
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query: 31  NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
             G G ++ G      P ++S + +G  AD    L  GD IL+VN  ++++A+H++ VK 
Sbjct: 12  RAGYGFTLSGQA----PCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKL 66

Query: 91  LKRAGKVVELEVGVGYG 107
           + +   V+ + +  G G
Sbjct: 67  IGKCSGVLHMVIAEGVG 83

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 81.8 bits (202), Expect = 3e-18
 Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 5/112 (4%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           R + + K ++  +G+ +K        I +  +     A     L  GD +L +NGE+   
Sbjct: 6   REVILCKDQDGKIGLRLKSIDN---GIFVQLVQANSPASLV-GLRFGDQVLQINGENCAG 61

Query: 236 ATHDEAVKALKRA-GKLVELEVKYLREVTPYFRKASIISEVGWELQRGFLSD 286
            + D+A K LK+A G+ + + ++                 VG+  + G ++ 
Sbjct: 62  WSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITS 113

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 70.6 bits (173), Expect = 2e-14
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
           ++  +G+ +K        I +  +     A     L  GD +L +NGE+    + D+A K
Sbjct: 14  QDGKIGLRLKSIDN---GIFVQLVQANSPASLV-GLRFGDQVLQINGENCAGWSSDKAHK 69

Query: 90  ALKRA-GKVVELEV 102
            LK+A G+ + + +
Sbjct: 70  VLKQAFGEKITMTI 83

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 8/84 (9%)

Query: 173 NQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGED 232
             +R I + K     +G   K GK       I+ I K  +A +   L     I  +NG++
Sbjct: 87  PFERTITMHKDSTGHVGFIFKNGK-------ITSIVKDSSAARNGLL-TEHNICEINGQN 138

Query: 233 LREATHDEAVKALKRAGKLVELEV 256
           +      +    L  +G +V + +
Sbjct: 139 VIGLKDSQIADILSTSGTVVTITI 162

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 26  YKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
                   +G   K GK       I+ I K  +A +   L     I  +NG+++      
Sbjct: 94  MHKDSTGHVGFIFKNGK-------ITSIVKDSSAARNGLL-TEHNICEINGQNVIGLKDS 145

Query: 86  EAVKALKRAGKVVELEV 102
           +    L  +G VV + +
Sbjct: 146 QIADILSTSGTVVTITI 162

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 79.3 bits (196), Expect = 4e-18
 Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 169 DSVENQKRIIRVKK-SENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
                 +  +++ K +     G  I       +P+ +  +  G +A    +L+ GD IL 
Sbjct: 3   SGSSGVRHTVKIDKDTLLQDYGFHISES----LPLTVVAVTAGGSAHG--KLFPGDQILQ 56

Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVK 257
           +N E   + + + AV  L+ A   + + V 
Sbjct: 57  MNNEPAEDLSWERAVDILREAEDSLSITVV 86

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 17  SSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNG 76
           S      +  K T     G  I       +P+ +  +  G +A    +L+ GD IL +N 
Sbjct: 6   SGVRHTVKIDKDTLLQDYGFHISES----LPLTVVAVTAGGSAHG--KLFPGDQILQMNN 59

Query: 77  EDLREATHDEAVKALKRAGKVVELEV 102
           E   + + + AV  L+ A   + + V
Sbjct: 60  EPAEDLSWERAVDILREAEDSLSITV 85

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 78.2 bits (193), Expect = 6e-18
 Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
            ++  VK ++N   G+ +         I + +I +   A +   +  GD +L +NG    
Sbjct: 4   TKVTLVKSAKNEEYGLRLASH------IFVKEISQDSLAARDGNIQEGDVVLKINGTVTE 57

Query: 235 EATHDEAVKALKRAGKLVELEVK 257
             +  +A   ++R+   +++ V+
Sbjct: 58  NMSLTDAKTLIERSKGKLKMVVQ 80

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 75.5 bits (186), Expect = 6e-17
 Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 27  KYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
           K  +N   G+ +         I + +I +   A +   +  GD +L +NG      +  +
Sbjct: 10  KSAKNEEYGLRLASH------IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTD 63

Query: 87  AVKALKRAGKVVELEV 102
           A   ++R+   +++ V
Sbjct: 64  AKTLIERSKGKLKMVV 79

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 78.2 bits (193), Expect = 7e-18
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 177 IIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 236
            I     ++   G +IK        I ++ +  G  A+ + QL V D I+++N       
Sbjct: 8   SINQTPGKSLDFGFTIKWDIP---GIFVASVEAGSPAEFS-QLQVDDEIIAINNTKFSYN 63

Query: 237 THDEAVKALKRAGKLVELEVKYLR 260
              E  +A+ +A +   L +   R
Sbjct: 64  DSKEWEEAMAKAQETGHLVMDVRR 87

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 74.0 bits (182), Expect = 2e-16
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
           ++   G +IK        I ++ +  G  A+ + QL V D I+++N          E  +
Sbjct: 15  KSLDFGFTIKWDIP---GIFVASVEAGSPAEFS-QLQVDDEIIAINNTKFSYNDSKEWEE 70

Query: 90  ALKRAGKVVELEVGVG-YGR 108
           A+ +A +   L + V  YG+
Sbjct: 71  AMAKAQETGHLVMDVRRYGK 90

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 78.3 bits (193), Expect = 1e-17
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           R  ++ K E    G  ++  K +    LI  I +G  A++   L  GD +L +NG  + +
Sbjct: 3   RESKLSKQEGQNYGFFLRIEK-DTDGHLIRVIEEGSPAEKA-GLLDGDRVLRINGVFVDK 60

Query: 236 ATHDEAVKALKRAGKLVELEV 256
             H + V+ ++++G  V L V
Sbjct: 61  EEHAQVVELVRKSGNSVTLLV 81

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 71.3 bits (175), Expect = 3e-15
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
           E    G  ++  K +    LI  I +G  A++   L  GD +L +NG  + +  H + V+
Sbjct: 11  EGQNYGFFLRIEK-DTDGHLIRVIEEGSPAEKA-GLLDGDRVLRINGVFVDKEEHAQVVE 68

Query: 90  ALKRAGKVVELEV 102
            ++++G  V L V
Sbjct: 69  LVRKSGNSVTLLV 81

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 77.4 bits (191), Expect = 1e-17
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 177 IIRVK-KSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           +I V            ++ G      I + ++ +   A +   L+ GD IL +NG     
Sbjct: 1   MIGVLLMKSRANEEYGLRLGS----QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTEN 56

Query: 236 ATHDEAVKALKRAGKLVELEVKYLREVTP 264
            +  +A K ++++   ++L V  LR++  
Sbjct: 57  MSLTDARKLIEKSRGKLQLVV--LRDLEH 83

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 75.4 bits (186), Expect = 5e-17
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 31  NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
                  ++ G      I + ++ +   A +   L+ GD IL +NG      +  +A K 
Sbjct: 10  RANEEYGLRLGS----QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKL 65

Query: 91  LKRAGKVVELEV 102
           ++++   ++L V
Sbjct: 66  IEKSRGKLQLVV 77

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 76.9 bits (190), Expect = 2e-17
 Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           ++  VK  +N   G+ +         I + +I +   A +   +  GD +L +NG     
Sbjct: 3   KVTLVKSRKNEEYGLRLASH------IFVKEISQDSLAARDGNIQEGDVVLKINGTVTEN 56

Query: 236 ATHDEAVKALKRAGKLVELEV 256
            +  +A   ++R+   +++ V
Sbjct: 57  MSLTDAKTLIERSKGKLKMVV 77

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 73.5 bits (181), Expect = 3e-16
 Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 27  KYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
           K  +N   G+ +         I + +I +   A +   +  GD +L +NG      +  +
Sbjct: 8   KSRKNEEYGLRLASH------IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTD 61

Query: 87  AVKALKRAGKVVELEV 102
           A   ++R+   +++ V
Sbjct: 62  AKTLIERSKGKLKMVV 77

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 76.9 bits (190), Expect = 2e-17
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           ++ R+ K EN G G  +   +       I ++ KG  AD    L   D I+ VNG ++ +
Sbjct: 5   KLCRLAKGEN-GYGFHLNAIR-GLPGSFIKEVQKGGPADLA-GLEDEDVIIEVNGVNVLD 61

Query: 236 ATHDEAVKALKRAGKLVELEV 256
             +++ V  ++ +GK V L V
Sbjct: 62  EPYEKVVDRIQSSGKNVTLLV 82

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 73.1 bits (180), Expect = 4e-16
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
             NG G  +   +       I ++ KG  AD    L   D I+ VNG ++ +  +++ V 
Sbjct: 12  GENGYGFHLNAIR-GLPGSFIKEVQKGGPADLA-GLEDEDVIIEVNGVNVLDEPYEKVVD 69

Query: 90  ALKRAGKVVELEV 102
            ++ +GK V L V
Sbjct: 70  RIQSSGKNVTLLV 82

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 77.6 bits (191), Expect = 2e-17
 Identities = 17/100 (17%), Positives = 46/100 (46%), Gaps = 13/100 (13%)

Query: 174 QKRIIRVKKSENNGLGISIKGGK------------ENKMPILISKIFKGMAADQTEQLYV 221
           +++ + ++K ++ G G  ++G K                   +  + +G  A +   L +
Sbjct: 7   KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRA-GLRM 65

Query: 222 GDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
           GD ++ VNG+++ +  H + V  +++ G  + ++V  +  
Sbjct: 66  GDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR 105

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 69.5 bits (170), Expect = 1e-14
 Identities = 16/85 (18%), Positives = 38/85 (44%), Gaps = 13/85 (15%)

Query: 30  ENNGLGISIKGGK------------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGE 77
           ++ G G  ++G K                   +  + +G  A +   L +GD ++ VNG+
Sbjct: 17  DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRA-GLRMGDFLIEVNGQ 75

Query: 78  DLREATHDEAVKALKRAGKVVELEV 102
           ++ +  H + V  +++ G  + ++V
Sbjct: 76  NVVKVGHRQVVNMIRQGGNTLMVKV 100

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 76.6 bits (189), Expect = 3e-17
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
           + R I + + ++ G G +I        P+ +  +  G  A++   L   D +L +N   +
Sbjct: 3   RYRQITIPRGKD-GFGFTICCDS----PVRVQAVDSGGPAERA-GLQQLDTVLQLNERPV 56

Query: 234 REATHDEAVKALKRAGKLVELEV 256
                 E    ++     + L V
Sbjct: 57  EHWKCVELAHEIRSCPSEIILLV 79

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 72.4 bits (178), Expect = 7e-16
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
             +G G +I        P+ +  +  G  A++   L   D +L +N   +      E   
Sbjct: 12  GKDGFGFTICCDS----PVRVQAVDSGGPAERA-GLQQLDTVLQLNERPVEHWKCVELAH 66

Query: 90  ALKRAGKVVELEVG 103
            ++     + L V 
Sbjct: 67  EIRSCPSEIILLVW 80

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 75.8 bits (187), Expect = 6e-17
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 176 RIIRVKKSENNGLGISIKGGKE--NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
           R + ++K    G G  ++  K    +    + ++  G+ A +   +  GD +++V GE +
Sbjct: 5   RCLHLEKGPQ-GFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESV 62

Query: 234 REATHDEAVKALKRAGKLVELEV 256
               H+E V  ++  G  V L V
Sbjct: 63  EGLGHEETVSRIQGQGSCVSLTV 85

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 31  NNGLGISIKGGKE--NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
             G G  ++  K    +    + ++  G+ A +   +  GD +++V GE +    H+E V
Sbjct: 13  PQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETV 71

Query: 89  KALKRAGKVVELEV 102
             ++  G  V L V
Sbjct: 72  SRIQGQGSCVSLTV 85

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 75.5 bits (186), Expect = 7e-17
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
            D    +K  I +++ ++ G G +I        P+ +  +  G  A++   L   D +L 
Sbjct: 9   GDPENGEKLQITIRRGKD-GFGFTICCDS----PVRVQAVDSGGPAERA-GLQQLDTVLQ 62

Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
           +N   +      E    ++     + L V   R   P
Sbjct: 63  LNERPVEHWKCVELAHEIRSCPSEIILLVW--RVSGP 97

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 70.9 bits (174), Expect = 3e-15
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 5/73 (6%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
             +G G +I        P+ +  +  G  A++   L   D +L +N   +      E   
Sbjct: 24  GKDGFGFTICCDS----PVRVQAVDSGGPAERA-GLQQLDTVLQLNERPVEHWKCVELAH 78

Query: 90  ALKRAGKVVELEV 102
            ++     + L V
Sbjct: 79  EIRSCPSEIILLV 91

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 74.6 bits (184), Expect = 1e-16
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           R+  ++K    G G ++   K ++    I  +  G  A ++  L   D ++ VNG+++  
Sbjct: 6   RLCHLRKGPQ-GYGFNLHSDK-SRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEG 62

Query: 236 ATHDEAVKALKRAGKLVELEV 256
             H E V ++K       L V
Sbjct: 63  LRHAEVVASIKAREDEARLLV 83

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 70.0 bits (172), Expect = 5e-15
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
              G G ++   K ++    I  +  G  A ++  L   D ++ VNG+++    H E V 
Sbjct: 13  GPQGYGFNLHSDK-SRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVA 70

Query: 90  ALKRAGKVVELEV 102
           ++K       L V
Sbjct: 71  SIKAREDEARLLV 83

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 73.9 bits (182), Expect = 2e-16
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
             R I + K     +G   K GK       I+ I K  +A +   L     I  +NG+++
Sbjct: 4   DPRTITMHKDSTGHVGFIFKNGK-------ITSIVKDSSAARNG-LLTEHNICEINGQNV 55

Query: 234 REATHDEAVKALKRAGKLVELEV 256
                 +    L  +G +V + +
Sbjct: 56  IGLKDSQIADILSTSGTVVTITI 78

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 67.3 bits (165), Expect = 3e-14
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 29  TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
                +G   K GK       I+ I K  +A +   L     I  +NG+++      +  
Sbjct: 13  DSTGHVGFIFKNGK-------ITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIA 64

Query: 89  KALKRAGKVVELEV 102
             L  +G VV + +
Sbjct: 65  DILSTSGTVVTITI 78

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 74.9 bits (184), Expect = 3e-16
 Identities = 14/89 (15%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 166 DIPDSVENQKRIIRVKKSENNGLGISIKGG--KENKMPILISKIFKGMAADQTEQLYVGD 223
           ++       + +   + +  + LG+++      E+ + I IS+I     A +  ++  GD
Sbjct: 12  EMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGD 71

Query: 224 AILSVNGEDLREATHDEAVKALKRAGKLV 252
            I+ +NG +++      A+   +      
Sbjct: 72  RIIQINGIEVQNREEAVALLTSEENKNFS 100

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 73.7 bits (181), Expect = 6e-16
 Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 26  YKYTENNGLGISIKGG--KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
           Y+    + LG+++      E+ + I IS+I     A +  ++  GD I+ +NG +++   
Sbjct: 26  YRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNRE 85

Query: 84  HDEAVKALKRAGKVV 98
              A+   +      
Sbjct: 86  EAVALLTSEENKNFS 100

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195

 Score = 76.9 bits (188), Expect = 3e-16
 Identities = 38/227 (16%), Positives = 64/227 (28%), Gaps = 43/227 (18%)

Query: 31  NNGLGISIKGGKENK--------MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 82
           +  LG SI GG   +          I ++++     A +   L  GD I+  NG      
Sbjct: 1   SPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINI 58

Query: 83  THDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDN 142
            H +AV  LK     VEL +    G     E  VR +       +     ++ +      
Sbjct: 59  EHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPT 118

Query: 143 STVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPI 202
           S +++   +   V                       R+   E  G             P+
Sbjct: 119 SLLISWDASYYGVSY--------------------YRITYGETGGNS-----------PV 147

Query: 203 LISKIFKGMAADQTEQLYVG-DAILSVNGEDLREA-THDEAVKALKR 247
               +    +      L  G D  ++V          H   +    R
Sbjct: 148 QEFTVPYSSSTATISGLKPGVDYTITVYAYSDYYGSHHYSPISINYR 194

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195

 Score = 72.3 bits (176), Expect = 1e-14
 Identities = 25/123 (20%), Positives = 39/123 (31%), Gaps = 14/123 (11%)

Query: 185 NNGLGISIKGGKENK--------MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 236
           +  LG SI GG   +          I ++++     A +   L  GD I+  NG      
Sbjct: 1   SPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINI 58

Query: 237 THDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRG----FLSDSPPSPS 292
            H +AV  LK     VEL +               + + G           L     +P+
Sbjct: 59  EHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPT 118

Query: 293 PQS 295
              
Sbjct: 119 SLL 121

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 77.5 bits (190), Expect = 3e-16
 Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 10/134 (7%)

Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
                + R+  +KK  + G G ++   K +K    I  +     A+ +  L   D I+ V
Sbjct: 4   PFTMLRPRLCTMKKGPS-GYGFNLHSDK-SKPGQFIRSVDPDSPAEASG-LRAQDRIVEV 60

Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDSP 288
           NG  +    H + V A++  G   +L V   RE   +F+K  +I        +  L+   
Sbjct: 61  NGVCMEGKQHGDVVSAIRAGGDETKLLVVD-RETDEFFKKCRVIPS------QEHLNGPL 113

Query: 289 PSPSPQSSQRADTR 302
           P P      + +  
Sbjct: 114 PVPFTNGEIQKENS 127

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 67.5 bits (164), Expect = 8e-13
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
             +G G ++   K +K    I  +     A+ +  L   D I+ VNG  +    H + V 
Sbjct: 18  GPSGYGFNLHSDK-SKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVS 75

Query: 90  ALKRAGKVVELEV 102
           A++  G   +L V
Sbjct: 76  AIRAGGDETKLLV 88

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 74.2 bits (182), Expect = 6e-16
 Identities = 17/100 (17%), Positives = 46/100 (46%), Gaps = 13/100 (13%)

Query: 174 QKRIIRVKKSENNGLGISIKGGK------------ENKMPILISKIFKGMAADQTEQLYV 221
           +++ + ++K ++ G G  ++G K                   +  + +G  A +   L +
Sbjct: 27  KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRA-GLRM 85

Query: 222 GDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
           GD ++ VNG+++ +  H + V  +++ G  + ++V  +  
Sbjct: 86  GDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR 125

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 68.1 bits (166), Expect = 8e-14
 Identities = 16/85 (18%), Positives = 38/85 (44%), Gaps = 13/85 (15%)

Query: 30  ENNGLGISIKGGK------------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGE 77
           ++ G G  ++G K                   +  + +G  A +   L +GD ++ VNG+
Sbjct: 37  DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRA-GLRMGDFLIEVNGQ 95

Query: 78  DLREATHDEAVKALKRAGKVVELEV 102
           ++ +  H + V  +++ G  + ++V
Sbjct: 96  NVVKVGHRQVVNMIRQGGNTLMVKV 120

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 72.5 bits (178), Expect = 7e-16
 Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 8/87 (9%)

Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVN 229
           ++ N   ++  +      LG S++ G        I  + +G  A++   + VG  I+ +N
Sbjct: 8   TMGNVTTVLIRRPDLRYQLGFSVQNGI-------ICSLMRGGIAERG-GVRVGHRIIEIN 59

Query: 230 GEDLREATHDEAVKALKRAGKLVELEV 256
           G+ +    H++ V  L  A   + ++ 
Sbjct: 60  GQSVVATPHEKIVHILSNAVGEIHMKT 86

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 65.9 bits (161), Expect = 1e-13
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
               LG S++ G        I  + +G  A++   + VG  I+ +NG+ +    H++ V 
Sbjct: 22  LRYQLGFSVQNGI-------ICSLMRGGIAERG-GVRVGHRIIEINGQSVVATPHEKIVH 73

Query: 90  ALKRAGKVVELEV 102
            L  A   + ++ 
Sbjct: 74  ILSNAVGEIHMKT 86

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 71.8 bits (176), Expect = 2e-15
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 12/105 (11%)

Query: 173 NQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGED 232
           +  R I     E   LG +++G      P+ +  +    +A        GD I+S+ G D
Sbjct: 14  SPPRGIHFTVEEG-DLGFTLRGNT----PVQVHFLDPHCSASLA-GAKEGDYIVSIQGVD 67

Query: 233 LREATHDEAVKALKRAGK-LVELEVKYLREVTPYFRKASIISEVG 276
            +  T  E +K LK  G   VE++V     V+     +S+ ++ G
Sbjct: 68  CKWLTVSEVMKLLKSFGGEEVEMKV-----VSLLDSTSSMHNKSG 107

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 66.0 bits (161), Expect = 2e-13
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
           E   LG +++G      P+ +  +    +A        GD I+S+ G D +  T  E +K
Sbjct: 24  EEGDLGFTLRGNT----PVQVHFLDPHCSASLA-GAKEGDYIVSIQGVDCKWLTVSEVMK 78

Query: 90  ALKRAGK-VVELEV 102
            LK  G   VE++V
Sbjct: 79  LLKSFGGEEVEMKV 92

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 76.8 bits (188), Expect = 5e-15
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 5/119 (4%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           ++++ +K +   +G+ + GG  N + I ++ + +   A +   L  GD IL VN  D   
Sbjct: 11  KLVKFRKGD--SVGLRLAGG--NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTN 65

Query: 236 ATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDSPPSPSPQ 294
              +EAV  L    K  E+ +   ++   Y R         + ++  F  +        
Sbjct: 66  IIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLS 124

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 74.5 bits (182), Expect = 3e-14
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 6/117 (5%)

Query: 18  SRDFYSENYKYTE---NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 74
           S      + K  +    + +G+ + GG  N + I ++ + +   A +   L  GD IL V
Sbjct: 2   SHMILRPSMKLVKFRKGDSVGLRLAGG--NDVGIFVAGVLEDSPAAKEG-LEEGDQILRV 58

Query: 75  NGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDY 131
           N  D      +EAV  L    K  E+ +     +               ++    +Y
Sbjct: 59  NNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEY 115

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 69.0 bits (169), Expect = 1e-14
 Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 173 NQKRIIRVKKSENNGLGISIKGGKE-------NKMPILISKIFKGMAADQTEQLYVGDAI 225
           + +  I +        G S++  +          +  ++  +  G  A +   L  GD I
Sbjct: 1   SMRPPIVIHS-SGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEA-GLRAGDLI 58

Query: 226 LSVNGEDLREATHDEAVKALKRAGKLVELEV 256
             +NGE +    H + V+ L ++G  + L  
Sbjct: 59  THINGESVLGLVHMDVVELLLKSGNKISLRT 89

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 66.7 bits (163), Expect = 9e-14
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 30  ENNGLGISIKGGKE-------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 82
                G S++  +          +  ++  +  G  A +   L  GD I  +NGE +   
Sbjct: 11  SGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEA-GLRAGDLITHINGESVLGL 69

Query: 83  THDEAVKALKRAGKVVELEV 102
            H + V+ L ++G  + L  
Sbjct: 70  VHMDVVELLLKSGNKISLRT 89

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 75.7 bits (185), Expect = 2e-14
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 5/117 (4%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           ++++ +K +   +G+ + GG  N + I ++ + +   A +   L  GD IL VN  D   
Sbjct: 3   KLVKFRKGD--SVGLRLAGG--NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTN 57

Query: 236 ATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDSPPSPS 292
              +EAV  L    K  E+ +   ++   Y R         + ++  F  +      
Sbjct: 58  IIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYG 114

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 69.6 bits (169), Expect = 1e-12
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 3/101 (2%)

Query: 31  NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
            + +G+ + GG  N + I ++ + +   A +   L  GD IL VN  D      +EAV  
Sbjct: 10  GDSVGLRLAGG--NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLF 66

Query: 91  LKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDY 131
           L    K  E+ +     +               ++    +Y
Sbjct: 67  LLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEY 107

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 67.0 bits (164), Expect = 7e-14
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 9/91 (9%)

Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
            S + +   + + K    G G +I      +       + + +       L  GD I+ +
Sbjct: 5   SSGQAELMTLTIVKGAQ-GFGFTIADSPTGQR------VKQILDIQGCPGLCEGDLIVEI 57

Query: 229 NGEDLREATHDEAVKALK--RAGKLVELEVK 257
           N ++++  +H E V  LK    G    L + 
Sbjct: 58  NQQNVQNLSHTEVVDILKDCPIGSETSLIIH 88

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 64.7 bits (158), Expect = 4e-13
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 31  NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
             G G +I      +       + + +       L  GD I+ +N ++++  +H E V  
Sbjct: 20  AQGFGFTIADSPTGQR------VKQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDI 73

Query: 91  LK--RAGKVVELEV 102
           LK    G    L +
Sbjct: 74  LKDCPIGSETSLII 87

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 66.6 bits (163), Expect = 9e-14
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
                 +R + ++K + +G G ++ G +     +L+  +  G AA +   +  GD I+ V
Sbjct: 3   SGSSGVQRCVIIQK-DQHGFGFTVSGDR----IVLVQSVRPGGAAMKAG-VKEGDRIIKV 56

Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKY 258
           NG  +  ++H E VK +K +G  V L +  
Sbjct: 57  NGTMVTNSSHLEVVKLIK-SGAYVALTLLG 85

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
           + +G G ++ G +     +L+  +  G AA +   +  GD I+ VNG  +  ++H E VK
Sbjct: 17  DQHGFGFTVSGDR----IVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVK 71

Query: 90  ALKRAGKVVELEVGVGYG 107
            +K    V    +G   G
Sbjct: 72  LIKSGAYVALTLLGSSSG 89

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 67.6 bits (165), Expect = 1e-13
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 9/106 (8%)

Query: 5   LVLGGPTEAFFFSSRDF--------YSENYKYTENNGLGISIKGGKENKMPILISKIFKG 56
           + L   ++ F F+ R F           +YK  EN   G   +   E    I + ++ +G
Sbjct: 12  VTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEG 71

Query: 57  MAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
             A +   L  GD I+ VNGE +   T+ + +  ++ +   +EL V
Sbjct: 72  GPAFEA-GLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSV 116

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 67.3 bits (164), Expect = 1e-13
 Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 30/112 (26%)

Query: 173 NQKRIIRVKKSENNGLGISIKGGK----------------------------ENKMPILI 204
              + + +K++ + G G +++                               E    I +
Sbjct: 7   GGPKTVTLKRT-SQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFV 65

Query: 205 SKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEV 256
            ++ +G  A +   L  GD I+ VNGE +   T+ + +  ++ +   +EL V
Sbjct: 66  KQVKEGGPAFEA-GLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSV 116

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 71.9 bits (175), Expect = 2e-13
 Identities = 16/115 (13%), Positives = 45/115 (39%), Gaps = 2/115 (1%)

Query: 151 NSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGG--KENKMPILISKIF 208
             + + +     +   I  S     + ++++K +   LG+ +           ++++ + 
Sbjct: 181 EYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMM 240

Query: 209 KGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263
            G  A ++ +L +GD I+S+NG  L           +K      ++++  +    
Sbjct: 241 NGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPP 295

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 70.0 bits (170), Expect = 8e-13
 Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 29  TENNGLGISIKGG--KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
            +   LG+ +           ++++ +  G  A ++ +L +GD I+S+NG  L       
Sbjct: 213 HKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLAT 272

Query: 87  AVKALKRAGKVVELEVGV 104
               +K      ++++ +
Sbjct: 273 CQGIIKGLKNQTQVKLNI 290

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 68.8 bits (167), Expect = 2e-12
 Identities = 16/83 (19%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
              ++  +      LG S++ G        I  + +G  A++   + VG  I+ +NG+ +
Sbjct: 296 VTTVLIKRPDLKYQLGFSVQNGI-------ICSLMRGGIAERG-GVRVGHRIIEINGQSV 347

Query: 234 REATHDEAVKALKRAGKLVELEV 256
               H++ V+AL  +   + ++ 
Sbjct: 348 VATAHEKIVQALSNSVGEIHMKT 370

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 66.1 bits (160), Expect = 1e-11
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
               LG S++ G        I  + +G  A++   + VG  I+ +NG+ +    H++ V+
Sbjct: 306 LKYQLGFSVQNGI-------ICSLMRGGIAERG-GVRVGHRIIEINGQSVVATAHEKIVQ 357

Query: 90  ALKRAGKVVELEV 102
           AL  +   + ++ 
Sbjct: 358 ALSNSVGEIHMKT 370

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 64.6 bits (158), Expect = 4e-13
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 7/82 (8%)

Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
           + + K    G G +I           + +I   + + ++  L  GD I+ VN ++++  T
Sbjct: 7   VHIVKGPM-GFGFTIADSPGGGG-QRVKQI---VDSPRSRGLKEGDLIVEVNKKNVQALT 61

Query: 238 HDEAVKALKR--AGKLVELEVK 257
           H++ V  L     G  V L V+
Sbjct: 62  HNQVVDMLVESPKGSEVTLLVQ 83

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 31  NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
             G G +I           + +I   + + ++  L  GD I+ VN ++++  TH++ V  
Sbjct: 13  PMGFGFTIADSPGGGG-QRVKQI---VDSPRSRGLKEGDLIVEVNKKNVQALTHNQVVDM 68

Query: 91  LKR--AGKVVELEV 102
           L     G  V L V
Sbjct: 69  LVESPKGSEVTLLV 82

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
               I + K    G G +I      +    +  I     +   + L  GD I  +  +++
Sbjct: 12  LLVTIPLIKGPK-GFGFAIADSPTGQK---VKMILD---SQWCQGLQKGDIIKEIYHQNV 64

Query: 234 REATHDEAVKALKRAGKLVELEVKYLREVTPYFRKAS 270
           +  TH + V+ LK+     ++ +  LR   P   K +
Sbjct: 65  QNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTA 101

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 58.7 bits (142), Expect = 9e-11
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 31  NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
             G G +I      +    +  I     +   + L  GD I  +  ++++  TH + V+ 
Sbjct: 22  PKGFGFAIADSPTGQK---VKMILD---SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEV 75

Query: 91  LKRA--GKVVELEV 102
           LK+   G  V L +
Sbjct: 76  LKQFPVGADVPLLI 89

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 2e-10
 Identities = 79/523 (15%), Positives = 163/523 (31%), Gaps = 173/523 (33%)

Query: 12  EAFFFSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAI 71
           + F     +    NYK+     L   IK   E + P ++++++     +Q ++LY  + +
Sbjct: 80  QKFV---EEVLRINYKF-----LMSPIK--TEQRQPSMMTRMY----IEQRDRLYNDNQV 125

Query: 72  LS---VNGEDLREATHDEAVKALK--RAGKVVELEVGVGYGRCG----TLETY-----VR 117
            +   V+    R   + +  +AL   R  K V ++ GV  G  G     L+         
Sbjct: 126 FAKYNVS----RLQPYLKLRQALLELRPAKNVLID-GVL-G-SGKTWVALDVCLSYKVQC 178

Query: 118 GQWYKVF-VSL-----EEDYISI------TLDENY----DNSTVLNGTLNSNTV-DSISS 160
              +K+F ++L      E  + +       +D N+    D+S+  N  L  +++   +  
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS--NIKLRIHSIQAELRR 236

Query: 161 FM------DTVDIPDSVENQKRI----IRVK---KSENNGLGISIKGGKENKMPILISKI 207
            +      + + +  +V+N K      +  K    +    +   +         I +   
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH--ISLDHH 294

Query: 208 FKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK----------ALKRAG-------- 249
              +  D+ + L +    L    +DL      E +              R G        
Sbjct: 295 SMTLTPDEVKSLLL--KYLDCRPQDLPR----EVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 250 --------KLVELEVKYLR--EVTPYFRKASI------IS----EVGW------------ 277
                    ++E  +  L   E    F + S+      I      + W            
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 278 -ELQRGFLSDSPPSPSPQSSQRADTRYLP-LQLCYLVRNYKHYDSENRTLELHSPDGVHS 335
            +L +  L +  P  S        T  +P + L   V+    Y      ++       H 
Sbjct: 409 NKLHKYSLVEKQPKES--------TISIPSIYLELKVKLENEYALHRSIVD-------HY 453

Query: 336 CILRASDASEASL------WFNTLHSTLHVLTLKSIAEANKI-LGPALLGDLQLIGWLAR 388
            I +  D+ +         +++  H   H   LK+I    ++ L   +  D     +L +
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYS--HIGHH---LKNIEHPERMTLFRMVFLDF---RFLEQ 505

Query: 389 KLGQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYES 431
           K+       N   S     +                 L+ Y+ 
Sbjct: 506 KIRHDSTAWNASGSIL---NTLQQ-------------LKFYKP 532

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 4e-05
 Identities = 54/390 (13%), Positives = 108/390 (27%), Gaps = 106/390 (27%)

Query: 12  EAFFFSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAI 71
            AF  S +   +     T    +   +         I +      +  D+ + L +    
Sbjct: 260 NAFNLSCKILLT-----TRFKQVTDFLSAATTTH--ISLDHHSMTLTPDEVKSLLL--KY 310

Query: 72  LSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDY 131
           L    +DL      E +    R   ++   +  G              W  V        
Sbjct: 311 LDCRPQDLPR----EVLTTNPRRLSIIAESIRDGLAT--------WDNWKHVNCDKLTTI 358

Query: 132 ISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGIS 191
           I  +L+       VL         D +S F  +  IP  +                L + 
Sbjct: 359 IESSLN-------VLEPAEYRKMFDRLSVFPPSAHIPTIL----------------LSLI 395

Query: 192 IKGGKENKMPILISKIF-KGMAA-DQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG 249
                ++ + ++++K+    +      E         S+    L      E   AL R  
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTI------SIPSIYLELKVKLENEYALHR-- 447

Query: 250 KLVE---LEVKY-LREVTP-----YF--------------RKASIISEV----GWELQRG 282
            +V+   +   +   ++ P     YF               + ++   V     + L++ 
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF-LEQK 506

Query: 283 FLSDSPPSPSPQSSQRADT-----RYLPLQLCYLVRNYKHYDSENRTLE----------L 327
              DS    +  S    +T      Y P    Y+  N   Y+     +           +
Sbjct: 507 IRHDSTAWNASGSI--LNTLQQLKFYKP----YICDNDPKYERLVNAILDFLPKIEENLI 560

Query: 328 HSPDGVHSCILRASDASEASLWFNTLHSTL 357
            S    ++ +LR +  +E    F   H  +
Sbjct: 561 CSK---YTDLLRIALMAEDEAIFEEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 7e-05
 Identities = 83/592 (14%), Positives = 146/592 (24%), Gaps = 190/592 (32%)

Query: 211 MAADQTEQLYVGDAILSVNGED-------------LREATHDEAVK-------ALKRAGK 250
           M  +  E  Y    ILSV  +               +     E +        A+    +
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 251 LVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDSPPSPSPQSSQRADTR-------- 302
           L    +    E+   F +  +     + +    +      PS  +    + R        
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSP--IKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 303 -YLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLH------- 354
            +    +    R   +       LEL     V                   +        
Sbjct: 125 VFAKYNVS---RLQPYLKLRQALLELRPAKNV------------------LIDGVLGSGK 163

Query: 355 STLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQSDCLENGRASSESSGDDSTDRW 414
           + + +    S     K+           I WL   L   +  E                 
Sbjct: 164 TWVALDVCLSYKVQCKMDFK--------IFWL--NLKNCNSPE----------------- 196

Query: 415 VSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRWVSIFGAVTERELR 474
                 V E   +L             P    R+   S+             ++     R
Sbjct: 197 -----TVLEMLQKLLYQI--------DPNWTSRSDHSSNIKLRIH-------SIQAELRR 236

Query: 475 LYESAP-----------WSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVA 523
           L +S P            + +AW+     F L    L+++ R   V  F     T     
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWN----AFNLSCKILLTT-RFKQVTDFLSAATTTHISL 291

Query: 524 THHLRAETHRD----LANWARTLVQA--THSCVLNQRQVS-VRCMYRGQPSQLI----VN 572
            HH    T  +    L  +     Q         N R++S +    R   +       VN
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351

Query: 573 YDFGFRLLEATAGSMGR-EPKILWTYPFERLRMSSDDGVK-------LLWLDFGSD---- 620
            D   +L      S+   EP       F+RL +              L+W D        
Sbjct: 352 CD---KLTTIIESSLNVLEPAEYRKM-FDRLSVFPPS-AHIPTILLSLIWFDVIKSDVMV 406

Query: 621 -------LSLQDKIRPGRESNPRSSAYKADALQTKLTRVGSGVLSQAAGVH---IAQLSL 670
                   SL +K        P+ S     ++  +L       L     +H   +   ++
Sbjct: 407 VVNKLHKYSLVEK-------QPKESTISIPSIYLELKVK----LENEYALHRSIVDHYNI 455

Query: 671 GENSQTRTF---------------HMRCMYRGQPSQLIVN-Y-DFGFRLLEA 705
            +   +                  H++ +   +   L    + DF F  LE 
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF--LEQ 505

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 1e-04
 Identities = 52/415 (12%), Positives = 103/415 (24%), Gaps = 151/415 (36%)

Query: 451 ESSGDDSTDRWVSIFGAVTERELRLYESA---------PWSPEAWSTPAHVFPLVSTRLV 501
                  T R   +F  +  ++  + +            +      T     P + TR+ 
Sbjct: 57  SKDAVSGTLR---LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMY 112

Query: 502 SSSRHSDVIVFSVRCGTPQGVATHHL-RAETHRDLANWARTLVQATHSCVLNQRQVSVRC 560
              R              Q  A +++ R + +  L      L                  
Sbjct: 113 IEQR-------DRLYNDNQVFAKYNVSRLQPYLKLRQALLEL------------------ 147

Query: 561 MYRGQPSQLIVNY-DFGF--RLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDF 617
               +P++ ++     G     +   A  +    K+     F           K+ WL+ 
Sbjct: 148 ----RPAKNVLIDGVLGSGKTWV---ALDVCLSYKVQCKMDF-----------KIFWLNL 189

Query: 618 GSDLS-------LQD---KIRPGRESNPRSSA---YKADALQTKLTRVGSGVLSQAAGVH 664
            +  S       LQ    +I P   S    S+    +  ++Q +L R+    L      +
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL----LKSKPYEN 245

Query: 665 IAQLSLGE--NSQT-RTFHMRC-----------------MYRGQPSQLIVNYDFGF---- 700
              L L    N++    F++ C                       S  + ++        
Sbjct: 246 -CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS--LDHHSMTLTPDE 302

Query: 701 --RLL-------------EATAGS---------MGREPKILWTY----PFERLRMSSDDG 732
              LL             E    +           R+    W        ++L    +  
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 733 VKLLWLDFGSEEGEMRLRMSS----DDGVK-------LLWLDFGSEEGE--MREL 774
           + +L      E  E R                     L+W D    +    + +L
Sbjct: 363 LNVL------EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 53.1 bits (127), Expect = 1e-08
 Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 176 RIIRVKKSEN--NGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGED 232
           + I ++KS+   +  G S+   +E+ +  + ++ + +   A + + L  GD IL +N   
Sbjct: 17  QSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASK-KGLKAGDEILEINNRA 75

Query: 233 LREATHDEAVKALKRA 248
                       L + 
Sbjct: 76  ADALNSSMLKDFLSQP 91

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 50.8 bits (121), Expect = 6e-08
 Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 29  TENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
           T  +  G S+   +E+ +  + ++ + +   A + + L  GD IL +N            
Sbjct: 26  TAADTYGFSLSSVEEDGIRRLYVNSVKETGLASK-KGLKAGDEILEINNRAADALNSSML 84

Query: 88  VKALKRAGKVVELEV 102
              L +    + +  
Sbjct: 85  KDFLSQPSLGLLVRT 99

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 51.4 bits (122), Expect = 4e-08
 Identities = 15/99 (15%), Positives = 42/99 (42%), Gaps = 4/99 (4%)

Query: 164 TVDIPDSVENQKRIIRVKKSENNGLGISIK---GGKENKMPILISKIF-KGMAADQTEQL 219
           +  + D +     +I +  +     G S+            + + ++    ++ +    +
Sbjct: 5   SSGVQDQLPYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAI 64

Query: 220 YVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKY 258
           + GD IL +NG  +R    +E   A+K+  + ++L +++
Sbjct: 65  HPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEH 103

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 47.5 bits (112), Expect = 8e-07
 Identities = 13/76 (17%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 29  TENNGLGISIKGGKENKMP-ILISKIF-KGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
               G  ++++    N    + + ++    ++ +    ++ GD IL +NG  +R    +E
Sbjct: 26  ECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEE 85

Query: 87  AVKALKRAGKVVELEV 102
              A+K+  + ++L +
Sbjct: 86  VEDAIKQTSQTLQLLI 101

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 50.0 bits (119), Expect = 7e-08
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 176 RIIRVKKSEN--NGLGISIKGGKE-NKMPILISKIFKGMAADQTEQLYVGDAILSVNGED 232
             I ++KS+   +  G S+   +E     + ++ + +   A + + L  GD IL +N   
Sbjct: 8   HSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASK-KGLKAGDEILEINNRA 66

Query: 233 LREATHDEAVKALKRAGKLVELEVKYLREV 262
                       L      + L V+   E+
Sbjct: 67  ADALNSSMLKDFLS--QPSLGLLVRTYPEL 94

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 29 TENNGLGISIKGGKE-NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
          T  +  G S+   +E     + ++ + +   A + + L  GD IL +N            
Sbjct: 17 TAADTYGFSLSSVEEDGIRRLYVNSVKETGLASK-KGLKAGDEILEINNRAADALNSSML 75

Query: 88 VKALKR 93
             L +
Sbjct: 76 KDFLSQ 81

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 39/209 (18%), Positives = 65/209 (31%), Gaps = 57/209 (27%)

Query: 49  LISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGR 108
            +S++  G  + +   +  GD I S+NG+ L       +  A    G  V+L +     R
Sbjct: 266 FVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGL----LR 320

Query: 109 CGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIP 168
            G                     + +TLD +  +S                         
Sbjct: 321 NGKPLE-----------------VEVTLDTSTSSSA------------------------ 339

Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
            S E     +      +  L    KG       I I ++ KG  A Q   L   D I+ V
Sbjct: 340 -SAEMITPALEGATLSDGQLKDGGKG-------IKIDEVVKGSPAAQA-GLQKDDVIIGV 390

Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVK 257
           N + +      E  K L     ++ L++ 
Sbjct: 391 NRDRVNSI--AEMRKVLAAKPAIIALQIV 417

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6 Length = 125

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 48  ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
           + I  +  G  A +   L  G  I S+NG      T   A       G+V+ +  
Sbjct: 27  VQIDSVVPGSPASKV--LTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITT 79

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6 Length = 125

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 202 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK 257
           + I  +  G  A +   L  G  I S+NG      T   A       G+++ +   
Sbjct: 27  VQIDSVVPGSPASKV--LTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITTD 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	774
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	99.98
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.93
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.93
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.92
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.89
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.87
2adz_A	178	Alpha-1-syntrophin; protein binding; NMR {Mus musc	99.87
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.83
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.81
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	99.81
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	99.72
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.65
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	99.61
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.57
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.56
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.54
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.54
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.54
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.52
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.52
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.52
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.52
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.52
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.51
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.51
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.5
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.5
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.5
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.5
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.49
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.49
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.49
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.49
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.49
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.49
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.48
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.48
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.48
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.48
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.48
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.48
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.47
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.47
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.47
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.47
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.47
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.47
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.46
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.46
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.46
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.46
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.46
2ego_A	96	General receptor for phosphoinositides 1- associat	99.46
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.46
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.46
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.46
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.46
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.46
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.46
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.45
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.45
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.45
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.45
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.45
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.45
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.44
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.44
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.43
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.43
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.43
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.43
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.42
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.42
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.42
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.42
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.42
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.42
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.42
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.42
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.42
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.42
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.42
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.42
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.42
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.41
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.41
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.41
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.41
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.41
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.41
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.41
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.41
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.41
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.4
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.4
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.4
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.4
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.4
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.4
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.39
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.39
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	99.39
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	99.39
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.39
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.38
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.38
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.37
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.37
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.37
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.36
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.36
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.36
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.36
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.36
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.36
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.35
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.35
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.35
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.35
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.35
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.34
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.34
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.34
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.34
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.34
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.34
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.34
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.32
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	99.0
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.32
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.32
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.31
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.31
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.31
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.31
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.31
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.31
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.3
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.3
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.3
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.3
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	99.29
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.29
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.29
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.29
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	99.29
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.29
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.29
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.28
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.28
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.28
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.28
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.28
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.28
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.27
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.27
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.26
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.26
2ego_A	96	General receptor for phosphoinositides 1- associat	99.26
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	99.26
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.26
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.26
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.25
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.25
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.25
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.25
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.24
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.24
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.24
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.24
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.24
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.24
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.24
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.24
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.24
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.23
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.23
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.23
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.23
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.23
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.23
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.23
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	99.23
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.23
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.22
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.22
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.22
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.22
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.21
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.21
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.21
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.21
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.21
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	99.21
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.21
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.21
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.21
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.21
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.21
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.21
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.21
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.21
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.21
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.21
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.2
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.2
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.2
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	99.2
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.2
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	99.19
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.19
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.19
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.19
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.19
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.19
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.19
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.19
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.19
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	99.18
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.18
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	99.18
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.18
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.18
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.18
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.18
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.17
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.17
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.17
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.16
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.16
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.16
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.16
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.16
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.16
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.16
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.16
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.15
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.15
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.15
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.15
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.15
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.14
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.14
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.14
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.13
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.13
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	99.13
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.13
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.13
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.13
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.13
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.13
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.13
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.12
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.12
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.12
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.12
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	99.12
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.12
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.11
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.11
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.11
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.11
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.1
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.1
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.1
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.1
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	99.09
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.09
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.09
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	99.09
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.09
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.09
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.09
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.08
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.08
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.08
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.07
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.07
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	99.06
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.06
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.06
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	99.06
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.05
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	99.05
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.04
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	99.04
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	98.61
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.03
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.03
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.02
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.02
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.01
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.01
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.01
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	99.0
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.0
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	98.99
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	98.99
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.98
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	98.98
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	98.98
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	98.97
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	98.97
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	98.97
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	98.96
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	98.95
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	98.95
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	98.95
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	98.94
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	98.94
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	98.93
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	98.93
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.92
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	98.92
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	98.92
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	98.91
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	98.9
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.88
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	98.88
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	98.88
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.86
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	98.84
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	98.84
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	98.81
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	98.81
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.77
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	98.76
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	98.76
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	98.73
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	98.73
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	98.73
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.73
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	98.71
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	98.71
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.69
3cxb_B	112	Pleckstrin homology domain-containing family M mem	98.69
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.69
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.68
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	98.67
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	98.65
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	98.65
2d9y_A	117	Pleckstrin homology domain-containing protein fami	98.65
2yry_A	122	Pleckstrin homology domain-containing family A mem	98.64
2dkp_A	128	Pleckstrin homology domain-containing family A mem	98.64
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	98.63
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	98.63
1wi1_A	126	Calcium-dependent activator protein for secretion,	98.6
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	98.6
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	98.59
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	98.59
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	98.59
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	98.59
2d9v_A	130	Pleckstrin homology domain-containing protein fami	98.58
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	98.58
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	98.57
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	98.57
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	98.57
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	98.57
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	98.56
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	98.55
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	98.53
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	98.51
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	98.5
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	98.5
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	98.49
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	98.48
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	98.48
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.47
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.47
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	98.46
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	98.44
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	98.43
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	98.41
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	98.41
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.41
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	98.39
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.38
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	98.36
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.35
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	98.35
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	98.35
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	98.33
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	98.33
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	98.33
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	98.33
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	98.32
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	98.32
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	98.31
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	98.31
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	98.31
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.3
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.27
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.26
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.25
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	98.25
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.24
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	98.23
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.21
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.18
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.18
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.17
3k50_A	403	Putative S41 protease; structural genomics, joint	98.17
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	98.16
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	98.16
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.15
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	98.13
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	98.1
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	98.08
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	98.04
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	98.01
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.0
4fgm_A	597	Aminopeptidase N family protein; structural genomi	97.99
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	97.98
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	97.97
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	97.97
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	97.93
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	97.92
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	97.9
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	97.9
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	97.87
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	97.83
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	97.83
2fjl_A	150	1-phosphatidylinositol-4,5-bisphosphate phosphodie	97.81
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	97.8
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	97.8
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	97.79
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	97.78
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	97.72
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	97.69
3k50_A	403	Putative S41 protease; structural genomics, joint	97.62
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	97.6
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	97.59
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	97.55
4fgm_A	597	Aminopeptidase N family protein; structural genomi	97.53
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	97.44
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	97.38
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	97.38
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	97.35
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.27
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	97.2
4bbk_A	165	Kindlin-1, fermitin family homolog 1; PH domain, c	97.15
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.0
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	96.92
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	96.82
1k32_A	1045	Tricorn protease; protein degradation, substrate g	96.29
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	95.99
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	95.1
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	94.88
3ml4_A	224	Protein DOK-7; tyrosine phosphorylation, adapter p	94.33
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	94.1
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	93.94
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	93.69
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	93.49
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	93.18
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	92.88
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	92.83
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	92.82
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	92.67
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	92.63
3cxb_B	112	Pleckstrin homology domain-containing family M mem	92.53
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	92.34
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	92.12
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	91.93
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	91.92
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	91.86
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	91.8
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	91.77
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	91.55
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	91.27
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	91.25
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	91.2
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	90.81
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	90.39
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	90.39
2d9y_A	117	Pleckstrin homology domain-containing protein fami	90.18
2dkp_A	128	Pleckstrin homology domain-containing family A mem	90.16
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	89.97
1v5m_A	136	SH2 and PH domain-containing adapter protein APS;	89.68
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	89.67
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	89.66
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	89.34
2d9v_A	130	Pleckstrin homology domain-containing protein fami	89.31
2fjl_A	150	1-phosphatidylinositol-4,5-bisphosphate phosphodie	89.21
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	89.12
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	89.12
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	89.11
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	89.08
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	88.45
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	88.4
2yry_A	122	Pleckstrin homology domain-containing family A mem	88.28
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	88.12
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	87.67
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	87.59
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	87.58
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	87.45
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	87.17
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	87.05
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	86.58
1wi1_A	126	Calcium-dependent activator protein for secretion,	86.52

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=99.98  E-value=2.2e-31  Score=280.07  Aligned_cols=248  Identities=42%  Similarity=0.685  Sum_probs=203.7

Q ss_pred             cccceeeeeec-------cceeeeeeecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEEE
Q psy4897         107 GRCGTLETYVR-------GQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIR  179 (774)
Q Consensus       107 ~ks~~~~~~~~-------~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~  179 (774)
                      .+++.+.++.+       ++|.++...|..+.++++.+.....++.....    .....++.....++|+.+...++.|.
T Consensus         7 ~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~lp~~~~~~~r~V~   82 (263)
T 1z87_A            7 PRTGLLELRCGAGSGAGGERWQRVLLSLAEDALTVSPADGEPGPEPEPAQ----LNGAAEPGAAPPQLPEALLLQRRRVT   82 (263)
T ss_dssp             CEEEEEEEECSTTSCCSSCCEEEEEEEECSSEEEEECCCCSCCSCSSCCC----CSCSCSSSSSCSCCCCTTSCSSEEEC
T ss_pred             ccceeEEEEecCcccCCCCceEEeeeecccceEEEecccccccccccccc----cCCCccccccCCCCCCcCCCccEEEE
Confidence            34455555555       68999999999999999877653322211110    11112223334566777777899999


Q ss_pred             EeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEe
Q psy4897         180 VKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYL  259 (774)
Q Consensus       180 L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~  259 (774)
                      |.|....+|||.+.++.+...|++|..|.+++||+++++|++||+|++|||++|.+++|++++.+|+..++.|+|+|.|.
T Consensus        83 L~k~~~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V~L~V~R~  162 (263)
T 1z87_A           83 VRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM  162 (263)
T ss_dssp             CCTTTTCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCCCEEEECC
T ss_pred             EEeCCCCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEEEEeC
Confidence            99987789999999988777899999999999999953499999999999999999999999999999999999999999


Q ss_pred             cccccccccCcccccccccccCCCCCC-CCCCCCCCCCCCCCcCcccceeeEeeecccccCCCCceEEEecCCCceeEEE
Q psy4897         260 REVTPYFRKASIISEVGWELQRGFLSD-SPPSPSPQSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCIL  338 (774)
Q Consensus       260 ~~~~~~~~~~~~~~~l~w~~~~~~~~~-~~~~~~~~~~~~~~~~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~L  338 (774)
                      ++..+++++......++|..+.++.+. .+...++.+.+|.+.+.+|++|||++|++.++|+|+|+|||+++||.++++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~ipL~m~~~tR~~~~~d~~~~~fev~s~dG~~t~~l  242 (263)
T 1z87_A          163 KEVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPGPQPRNLSEAKHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFL  242 (263)
T ss_dssp             SSSSCSSSCSSCCCCCSSSCCSCCCSSSSSCSSSCCCCCCSSCEEEESSSEEEEEECCSSCSSSCEEEEEETTTTEEEEE
T ss_pred             ccccccccccCcccccccccCCCCCCCCCCCCCCCCCcCcccccccCcceeeeeeeccccCCCCceEEEECCCCCeeEEE
Confidence            999999998888888999876644332 2223345557899999999999999999999999999999999999999999


Q ss_pred             eeCChHhHHHHHHHHHHHhh
Q psy4897         339 RASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       339 r~~d~~~~~~W~~Ai~~ni~  358 (774)
                      ||+|.+++.+||+|||.||.
T Consensus       243 ~~~d~~~a~~W~~ai~~~i~  262 (263)
T 1z87_A          243 RAKDEASARSWAGAIQAQIG  262 (263)
T ss_dssp             ECSSHHHHHHHHHHHHHHHC
T ss_pred             EECCHHHHHHHHHHHHHHhc
Confidence            99999999999999999985

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.93  E-value=7.3e-25  Score=218.38  Aligned_cols=179  Identities=40%  Similarity=0.541  Sum_probs=151.4

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCC-----CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~-----~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      .++++|++.+. +++|||+|.+|.+.     ..+++|..|.|+|||+++|+|++||+|++|||+++.++++.+++.+++.
T Consensus         4 ~~~~~v~l~~~-~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   82 (196)
T 3gsl_A            4 MEYEEITLERG-NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE   82 (196)
T ss_dssp             EEEEEEEEECB-TTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             cEEEEEEEEEC-CCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            45677888665 67899999999876     4689999999999999998899999999999999999999999999999


Q ss_pred             cCceEEEEeeecccccceeeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCcccc
Q psy4897          94 AGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVEN  173 (774)
Q Consensus        94 ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~  173 (774)
                      +++.+.|+|.|.....                                                               .
T Consensus        83 ~g~~v~l~v~r~~~~~---------------------------------------------------------------~   99 (196)
T 3gsl_A           83 AGSIVRLYVMRRKPPA---------------------------------------------------------------E   99 (196)
T ss_dssp             SCSEEEEEEEEECCCC---------------------------------------------------------------E
T ss_pred             CCCcEEEEEEecCCCc---------------------------------------------------------------c
Confidence            9999999998754110                                                               0


Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC-----CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA  248 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~-----~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~  248 (774)
                      ....+.+.+. ..++||.+.++.+.     ..+++|..|.+++||+++|+|++||+|++|||++|.++++++++++|++.
T Consensus       100 ~~~~v~l~~~-~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~  178 (196)
T 3gsl_A          100 KVMEIKLIKG-PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT  178 (196)
T ss_dssp             EEEEEEEEEB-TTBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSC
T ss_pred             ccEEEEEecC-CCCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcC
Confidence            1234445443 35789998765432     35799999999999999988999999999999999999999999999999


Q ss_pred             CcceEEEEEEeccc
Q psy4897         249 GKLVELEVKYLREV  262 (774)
Q Consensus       249 g~~V~L~V~R~~~~  262 (774)
                      ++.+.|+|.|....
T Consensus       179 ~~~v~l~v~R~~~~  192 (196)
T 3gsl_A          179 YDVVYLKVAKPSNA  192 (196)
T ss_dssp             CEEEEEEEEEESCC
T ss_pred             CCeEEEEEeCCCCc
Confidence            99999999987653

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.93  E-value=2.5e-24  Score=217.34  Aligned_cols=181  Identities=20%  Similarity=0.244  Sum_probs=152.1

Q ss_pred             cCCCCcEEEEEEeecCCcccEEEEccCCCC--CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCC--CCHHHHHHHH
Q psy4897          16 FSSRDFYSENYKYTENNGLGISIKGGKENK--MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE--ATHDEAVKAL   91 (774)
Q Consensus        16 ~~s~~~~~V~l~rk~~~gLGfsI~GG~e~~--~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~--~sh~eaV~lL   91 (774)
                      ....+..++++.+ .+.+|||+|.+|.+..  .|++|..|.++|||+++|+|++||+|++|||++|.+  ++|.+++.++
T Consensus        14 ~~~~~~~~v~~~~-~~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~   92 (206)
T 3r0h_A           14 IKPNKKILIELKV-EKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLF   92 (206)
T ss_dssp             CCTTSCEEEEEEC-TTSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHH
T ss_pred             CCCCCEEEEEEEe-CCCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHH
Confidence            3455677788866 6799999999998764  489999999999999998899999999999999999  9999999999


Q ss_pred             HhcCce-EEEEeeecccccceeeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCc
Q psy4897          92 KRAGKV-VELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDS  170 (774)
Q Consensus        92 k~ag~~-V~L~V~R~~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~  170 (774)
                      +.++.. |.|+|.|.....                                                             
T Consensus        93 ~~~~~~~v~l~v~R~~~~~-------------------------------------------------------------  111 (206)
T 3r0h_A           93 HTTYEKAVTLTVFRADPPE-------------------------------------------------------------  111 (206)
T ss_dssp             HSCCSSEEEEEEECCSSCC-------------------------------------------------------------
T ss_pred             HhcCCCceEEEEEecccCC-------------------------------------------------------------
Confidence            998887 999998764210                                                             


Q ss_pred             cccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897         171 VENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK  250 (774)
Q Consensus       171 ~~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~  250 (774)
                        .....+.+.+....++||.+...   ..+++|..|.++|+|+++|+|++||+|++|||++|.++++++++.++++.++
T Consensus       112 --~~~~~v~l~~~~~~~lG~~~~~~---~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~  186 (206)
T 3r0h_A          112 --LEKFNVDLMKKAGKELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANG  186 (206)
T ss_dssp             --EEEEEEEEECCTTCCCCEEEEEC---SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCS
T ss_pred             --CcEEEEEEecCCCCccCeEEEcC---CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence              01233444444456799998754   4689999999999999998899999999999999999999999999999889


Q ss_pred             ceEEEEEEecccc
Q psy4897         251 LVELEVKYLREVT  263 (774)
Q Consensus       251 ~V~L~V~R~~~~~  263 (774)
                      .+.|+|.|.....
T Consensus       187 ~v~L~V~R~~~~~  199 (206)
T 3r0h_A          187 KVSMEVTRPKPTL  199 (206)
T ss_dssp             EEEEEEEEECCCC
T ss_pred             eEEEEEEeCCCCC
Confidence            9999999865433

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.92  E-value=1.8e-23  Score=210.53  Aligned_cols=188  Identities=32%  Similarity=0.457  Sum_probs=154.5

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV   98 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V   98 (774)
                      ...+.|.+.++++.+|||+|.+|.+...+++|..|.++|||+++|+|++||+|++|||+++.+++|.+++.+++.+++.|
T Consensus         6 ~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v   85 (200)
T 2qt5_A            6 KGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERV   85 (200)
T ss_dssp             EEEEEEEEECCTTCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEE
T ss_pred             CCCEEEEEEeCCCCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            45788999999999999999999988889999999999999999559999999999999999999999999999999999


Q ss_pred             EEEeeecccccceeeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEE
Q psy4897          99 ELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRII  178 (774)
Q Consensus        99 ~L~V~R~~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V  178 (774)
                      .|+|.|+.+...                                   .++                    .........+
T Consensus        86 ~l~v~R~~~~~~-----------------------------------~~g--------------------~~~~~~~~~v  110 (200)
T 2qt5_A           86 VLEVEYELPPVS-----------------------------------IQG--------------------SSVMFRTVEV  110 (200)
T ss_dssp             EEEEEEECCCCC-----------------------------------CCC--------------------SSEEEEEEEE
T ss_pred             EEEEeccCCCcc-----------------------------------cCC--------------------CccceeEEEE
Confidence            999987542100                                   000                    0000012334


Q ss_pred             EEeccCCCCcceEEeCCCCC----CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEE
Q psy4897         179 RVKKSENNGLGISIKGGKEN----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVEL  254 (774)
Q Consensus       179 ~L~k~~~~~LGfsi~gg~~~----~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L  254 (774)
                      .+.+ ....+||.+.++...    ..+++|..|.++++|+++|.|++||+|++|||+++.++++++++++|+..++.+.|
T Consensus       111 ~l~~-~~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l  189 (200)
T 2qt5_A          111 TLHK-EGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATL  189 (200)
T ss_dssp             EEEC-BTTBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEE
T ss_pred             EEec-CCCCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            4443 356799998865432    35799999999999999977999999999999999988899999999998899999


Q ss_pred             EEEEeccc
Q psy4897         255 EVKYLREV  262 (774)
Q Consensus       255 ~V~R~~~~  262 (774)
                      +|.|....
T Consensus       190 ~v~R~~~~  197 (200)
T 2qt5_A          190 LIEYDVSV  197 (200)
T ss_dssp             EEEEEEEC
T ss_pred             EEEECCcc
Confidence            99987653

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.89  E-value=5e-22  Score=199.73  Aligned_cols=183  Identities=26%  Similarity=0.393  Sum_probs=149.8

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCC----CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKEN----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA   94 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~----~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a   94 (774)
                      .+.++|++.+.+..+|||+|.+|.+.    ..+++|..|.|+|||+++|.|++||+|++|||+++.++++.++..+++..
T Consensus         5 ~~~~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   84 (196)
T 1p1d_A            5 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS   84 (196)
T ss_dssp             CEEEEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTC
T ss_pred             cEEEEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            35678899888889999999998653    35799999999999999977999999999999999999999999999987


Q ss_pred             --CceEEEEeeecccccceeeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccc
Q psy4897          95 --GKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVE  172 (774)
Q Consensus        95 --g~~V~L~V~R~~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~  172 (774)
                        ++.|.|+|.|+.....                +                                        |.   
T Consensus        85 ~~g~~v~l~v~R~~~~~~----------------~----------------------------------------~~---  105 (196)
T 1p1d_A           85 SITSKVTLEIEFDVAESV----------------I----------------------------------------PS---  105 (196)
T ss_dssp             CSSSEEEEEEEECSCSCC----------------B----------------------------------------CC---
T ss_pred             CCCCeEEEEEEecCCCCC----------------C----------------------------------------CC---
Confidence              7899999987652100                0                                        00   


Q ss_pred             cceEEEEEeccCCCCcceEEeCCCCC--CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK  250 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~~--~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~  250 (774)
                      .....+.+.+.....+||.+......  ..+++|..|.+++||+++|.|++||+|++|||+++.+++++++.++|++.++
T Consensus       106 ~~~~~v~l~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~  185 (196)
T 1p1d_A          106 SGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCED  185 (196)
T ss_dssp             SSCEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTT
T ss_pred             CCcEEEEecCCCCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            01233444433456789988764322  4689999999999999997799999999999999999999999999998889


Q ss_pred             ceEEEEEEec
Q psy4897         251 LVELEVKYLR  260 (774)
Q Consensus       251 ~V~L~V~R~~  260 (774)
                      .+.|+|.|..
T Consensus       186 ~v~l~v~R~~  195 (196)
T 1p1d_A          186 LVKLKIRKDE  195 (196)
T ss_dssp             CEEEEEECCC
T ss_pred             EEEEEEEeCC
Confidence            9999998754

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.87  E-value=2.4e-21  Score=230.67  Aligned_cols=181  Identities=39%  Similarity=0.530  Sum_probs=152.5

Q ss_pred             CCCCcEEEEEEeecCCcccEEEEccCCC-----CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHH
Q psy4897          17 SSRDFYSENYKYTENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL   91 (774)
Q Consensus        17 ~s~~~~~V~l~rk~~~gLGfsI~GG~e~-----~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lL   91 (774)
                      ...+.++|.+.+.. ++|||+|.||.+.     ..|++|+.|.+||||+++|+|++||+|++|||++|.+++|.+++.++
T Consensus        56 ~~~~~~~v~l~k~~-~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l  134 (721)
T 2xkx_A           56 GEMEYEEITLERGN-SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEAL  134 (721)
T ss_pred             CCceEEEEEEEeCC-CCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHh
Confidence            34467788887766 6999999999875     46899999999999999988999999999999999999999999999


Q ss_pred             HhcCceEEEEeeecccccceeeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCcc
Q psy4897          92 KRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSV  171 (774)
Q Consensus        92 k~ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~  171 (774)
                      +.+++.|+|+|.|.....                                                              
T Consensus       135 ~~~g~~v~l~v~R~~~~~--------------------------------------------------------------  152 (721)
T 2xkx_A          135 KEAGSIVRLYVMRRKPPA--------------------------------------------------------------  152 (721)
T ss_pred             hccccccceEEEeccccc--------------------------------------------------------------
Confidence            999999999998754110                                                              


Q ss_pred             ccceEEEEEeccCCCCcceEEeCCCCC-----CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy4897         172 ENQKRIIRVKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK  246 (774)
Q Consensus       172 ~~~~r~V~L~k~~~~~LGfsi~gg~~~-----~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk  246 (774)
                       .....+++.+. ..+|||++.++.+.     ..+++|..|.++++|+++|+|++||+|++|||++|.++++.+++.+++
T Consensus       153 -~~~~~v~l~k~-~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~  230 (721)
T 2xkx_A          153 -EKVMEIKLIKG-PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALK  230 (721)
T ss_pred             -ccceeeeeeee-cCCCceeeccCCCccccCCCCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Confidence             01233444443 45689998875432     468999999999999999889999999999999999999999999999


Q ss_pred             HcCcceEEEEEEeccc
Q psy4897         247 RAGKLVELEVKYLREV  262 (774)
Q Consensus       247 ~~g~~V~L~V~R~~~~  262 (774)
                      ..++.|.|+|.|.+..
T Consensus       231 ~~~~~v~l~V~R~g~~  246 (721)
T 2xkx_A          231 NTYDVVYLKVAKPSNA  246 (721)
T ss_pred             cCCCeEEEEEEeCCcc
Confidence            8889999999987653

>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.87  E-value=3.6e-22  Score=196.15  Aligned_cols=165  Identities=28%  Similarity=0.512  Sum_probs=136.4

Q ss_pred             cccccceeeeeec-------cceeeeeeecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEE
Q psy4897         105 GYGRCGTLETYVR-------GQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRI  177 (774)
Q Consensus       105 ~~~ks~~~~~~~~-------~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~  177 (774)
                      ...+++.++++++       ++|.++..+|.++.+.++.++...      +                   |+        
T Consensus         5 ~~~rsG~lel~~~~g~~~~~~~w~~V~~~L~~d~Ltl~~~d~~~------~-------------------~~--------   51 (178)
T 2adz_A            5 RAPRTGLLELRCGAGSGAGGERWQRVLLSLAEDALTVSPADGEP------G-------------------PE--------   51 (178)
T ss_dssp             CCCEEEEEEECCCCSSSSSCCCCEEEEEEEETTEEEEESSSCCC------C-------------------SS--------
T ss_pred             ccccceEEEEEeccccccCCCceEeeeeeeccceEEeecccccc------C-------------------CC--------
Confidence            3456777888777       899999999999999988655400      0                   00        


Q ss_pred             EEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEE
Q psy4897         178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK  257 (774)
Q Consensus       178 V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~  257 (774)
                             .        +|.+          .+|.+|+++|.|++||.|++                              
T Consensus        52 -------~--------~ga~----------~~g~aad~tg~l~vgDAI~~------------------------------   76 (178)
T 2adz_A           52 -------P--------EPAQ----------LNGAAEPGAAPPQLPEALLL------------------------------   76 (178)
T ss_dssp             -------C--------CCCC----------CCCCCCSCCSSCCCCSSTTT------------------------------
T ss_pred             -------C--------CCcC----------CCCCcccccCCCCcchHHHH------------------------------
Confidence                   0        1211          56788999999999999987                              


Q ss_pred             EecccccccccCcccccccccccCCCCC-CCCCCCCCCCCCCCCcCcccceeeEeeecccccCCCCceEEEecCCCceeE
Q psy4897         258 YLREVTPYFRKASIISEVGWELQRGFLS-DSPPSPSPQSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSC  336 (774)
Q Consensus       258 R~~~~~~~~~~~~~~~~l~w~~~~~~~~-~~~~~~~~~~~~~~~~~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~  336 (774)
                       .+++.+|+++++.+++++|+.+++... ..+..+.+++++|.|.+.|||+|||++|++.++|+|+|+|||+++||.+++
T Consensus        77 -~re~tpylkk~s~~~~~gw~~~~~~s~~~~~~s~~~~~~~~~D~~~IPLkMayvtR~~~~tD~e~r~fEv~s~DG~~t~  155 (178)
T 2adz_A           77 -QREVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPGPQPRNLSEAKHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAV  155 (178)
T ss_dssp             -STTTSSCSSSCCCSSSCCCCCCSCCCCCCCSSSSCCCCCSSCSCEEEETTTCEEEEECCSSCCSSCEEEEEETTTTEEE
T ss_pred             -HhhccHhhccccCCCCcccccCCCCCcccCCCCCCCCCcccCcceeecHHHHHHHHhccCCCCCccEEEEEcCCCCeeE
Confidence             788999999999999999998775433 233344556688999999999999999999999999999999999999999


Q ss_pred             EEeeCChHhHHHHHHHHHHHhh
Q psy4897         337 ILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       337 ~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      ||||+|.+++.+||+|||+||.
T Consensus       156 iLrc~D~a~a~~Wf~aI~sni~  177 (178)
T 2adz_A          156 FLRAKDEASARSWAGAIQAQIG  177 (178)
T ss_dssp             EECCSSHHHHHHHHHHHHHHHT
T ss_pred             EEEeCCHHHHHHHHHHHHHhcc
Confidence            9999999999999999999996

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.83  E-value=2.4e-19  Score=213.53  Aligned_cols=237  Identities=31%  Similarity=0.416  Sum_probs=157.4

Q ss_pred             cEEEEEEeecCCcccEEEEccCCC-----CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcC
Q psy4897          21 FYSENYKYTENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG   95 (774)
Q Consensus        21 ~~~V~l~rk~~~gLGfsI~GG~e~-----~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag   95 (774)
                      .++|++.+ +..+|||+|.+|.+.     ..|++|..|.+||||+++|+|++||+|++|||++|.+++|.+++.+++.++
T Consensus       155 ~~~v~l~k-~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~  233 (721)
T 2xkx_A          155 VMEIKLIK-GPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTY  233 (721)
T ss_pred             ceeeeeee-ecCCCceeeccCCCccccCCCCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHcCC
Confidence            45667754 467899999987643     368999999999999999889999999999999999999999999999999


Q ss_pred             ceEEEEeeecccccceeeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccce
Q psy4897          96 KVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQK  175 (774)
Q Consensus        96 ~~V~L~V~R~~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~  175 (774)
                      +.|.|+|.|++.... ......   ........ ....................+........++...............
T Consensus       234 ~~v~l~V~R~g~~~~-~~~~~~---p~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  308 (721)
T 2xkx_A          234 DVVYLKVAKPSNAYL-SDSYAP---PDITTSYS-QHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREP  308 (721)
T ss_pred             CeEEEEEEeCCcccc-cCCCCC---CCcccCCC-CCcccccCCcccccccccccCCCCCCcccCCcccccccccccccce
Confidence            999999988753210 000000   00000000 0000000000000000000000000000000000000001122356


Q ss_pred             EEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEE
Q psy4897         176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELE  255 (774)
Q Consensus       176 r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~  255 (774)
                      +.+.+.+. ..+|||.+.++.+ ..+++|..|.++++|+++|.|++||+|++|||++|.++++++++++|++.++.|+|+
T Consensus       309 ~~v~l~~~-~~~lG~~i~~~~~-~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~~~v~L~  386 (721)
T 2xkx_A          309 RRIVIHRG-STGLGFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII  386 (721)
T ss_pred             EEEEEEEC-CCCccEEEeccCC-CCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEEE
Confidence            77888775 5789999987643 468999999999999999889999999999999999999999999999989999999


Q ss_pred             EEEecccccc
Q psy4897         256 VKYLREVTPY  265 (774)
Q Consensus       256 V~R~~~~~~~  265 (774)
                      |.|....+..
T Consensus       387 v~r~~~~~~~  396 (721)
T 2xkx_A          387 AQYKPEEYSR  396 (721)
T ss_pred             EEeCchhhhh
Confidence            9987765543

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.81  E-value=2.5e-18  Score=168.42  Aligned_cols=160  Identities=21%  Similarity=0.306  Sum_probs=131.7

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-cCce
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKV   97 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~-ag~~   97 (774)
                      ..+++|.+.+...++|||++...   ..+++|..|.|+|||+++| |++||+|++|||+++.++++..+..+++. .++.
T Consensus         3 ~~~r~v~l~k~~~~~lG~~~~~~---~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~   78 (166)
T 1w9e_A            3 MDPREVILCKDQDGKIGLRLKSI---DNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEK   78 (166)
T ss_dssp             CCCEEEEEECCTTSCCSEEEEEE---TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSE
T ss_pred             CCCEEEEEEeCCCCcEeEEEEeC---CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCE
Confidence            35788999888889999999864   3689999999999999998 99999999999999999998777777766 4568


Q ss_pred             EEEEeeecccccceeeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEE
Q psy4897          98 VELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRI  177 (774)
Q Consensus        98 V~L~V~R~~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~  177 (774)
                      +.|+|.+.. +                                                                  .+.
T Consensus        79 v~l~vr~~~-~------------------------------------------------------------------~~~   91 (166)
T 1w9e_A           79 ITMTIRDRP-F------------------------------------------------------------------ERT   91 (166)
T ss_dssp             EEEEEECCT-T------------------------------------------------------------------CEE
T ss_pred             EEEEEEcCC-C------------------------------------------------------------------cEE
Confidence            999993321 1                                                                  122


Q ss_pred             EEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEE
Q psy4897         178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK  257 (774)
Q Consensus       178 V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~  257 (774)
                      +.+.+.....+||.+..      + +|..|.+++||+++| |++||+|++|||+++.++++.++...++..++.+.+.+.
T Consensus        92 v~l~~~~~~~lG~~~~~------g-~v~~v~~~s~a~~aG-l~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l~v~  163 (166)
T 1w9e_A           92 ITMHKDSTGHVGFIFKN------G-KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM  163 (166)
T ss_dssp             EEEECCTTSCCSEEEET------T-EEEEECTTSHHHHTT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEE
T ss_pred             EEEecCCCCcEeEEEeC------C-EEEEEccCCHHHHcC-CCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEEEEEE
Confidence            33332234568888762      3 899999999999998 999999999999999999999999889888888888775

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=99.81  E-value=7.7e-21  Score=210.91  Aligned_cols=168  Identities=19%  Similarity=0.315  Sum_probs=78.3

Q ss_pred             cCCCCcEEEEEEeecCCcccEEEEccCCC--CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          16 FSSRDFYSENYKYTENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        16 ~~s~~~~~V~l~rk~~~gLGfsI~GG~e~--~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      ..+....+|.+.++++++|||+|.++...  ..+++|..|.|||||+++|+|++||+|++|||+++.+++|.+++.+++.
T Consensus       200 ~~~~~~~~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~  279 (388)
T 3suz_A          200 SNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKG  279 (388)
T ss_dssp             CCSSCCEEEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTT
T ss_pred             cccccceEEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHh
Confidence            66778899999999899999999974321  2468999999999999998899999999999999999999999999988


Q ss_pred             c--CceEEEEeeecccccceeeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCcc
Q psy4897          94 A--GKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSV  171 (774)
Q Consensus        94 a--g~~V~L~V~R~~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~  171 (774)
                      .  +..|+|+|.|....                                                               
T Consensus       280 ~~~~~~v~l~v~r~~~~---------------------------------------------------------------  296 (388)
T 3suz_A          280 LKNQTQVKLNIVSCPPV---------------------------------------------------------------  296 (388)
T ss_dssp             CTTCSCEEEEEEECCSC---------------------------------------------------------------
T ss_pred             ccCCCcccccccccccc---------------------------------------------------------------
Confidence            5  45689998775310                                                               


Q ss_pred             ccceEEEEE-eccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897         172 ENQKRIIRV-KKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK  250 (774)
Q Consensus       172 ~~~~r~V~L-~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~  250 (774)
                          +.+.+ .+.....+||.+.++       +|..|.++++|+++| |++||+|++|||++|.+.++++++++|++.++
T Consensus       297 ----~~v~l~~~~~~~~lG~~i~~g-------~I~~V~~gs~A~~aG-L~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~  364 (388)
T 3suz_A          297 ----TTVLIKRPDLKYQLGFSVQNG-------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSVG  364 (388)
T ss_dssp             ----C---------------------------------------------------------------------------
T ss_pred             ----ceeeEeecCCCCccceEEecC-------EEEEeecCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence                00011 111235688887643       899999999999998 99999999999999999999999999999999


Q ss_pred             ceEEEEEE
Q psy4897         251 LVELEVKY  258 (774)
Q Consensus       251 ~V~L~V~R  258 (774)
                      .+.|+|.+
T Consensus       365 ~v~L~V~p  372 (388)
T 3suz_A          365 EIHMKTMP  372 (388)
T ss_dssp             --------
T ss_pred             eEEEEEEe
Confidence            99998864

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=99.72  E-value=5.8e-17  Score=164.90  Aligned_cols=162  Identities=15%  Similarity=0.081  Sum_probs=116.6

Q ss_pred             cccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCC-CEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecccccce
Q psy4897          33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVG-DAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGT  111 (774)
Q Consensus        33 gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvG-D~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~~ks~~  111 (774)
                      ++|++...+.+...|++|..|.|+|||+++| |++| |+|++|||++|.++++.....+....++.|.|+|.|.... ..
T Consensus         3 g~~~~~~~~~~~~~G~~V~~V~~~SpA~~AG-L~~G~D~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~-~~   80 (209)
T 3rle_A            3 GSSQSVEIPGGGTEGYHVLRVQENSPGHRAG-LEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTL-EL   80 (209)
T ss_dssp             -----CCCTTSSSEEEEEEEECTTSHHHHTT-CCTTTEEEEEETTEECCSSSSHHHHHHHHTTTSCEEEEEEETTTC-CE
T ss_pred             chhhhhhccCCCCCEEEEEEECCCCHHHHCC-CCcCCeEEEEECCEECcCHHHHHHHHHhcCCCCEEEEEEEecCCc-eE
Confidence            5666776677777899999999999999998 9999 9999999999999988766555556788999999886411 00


Q ss_pred             eeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEEEEeccCCCCcceE
Q psy4897         112 LETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGIS  191 (774)
Q Consensus       112 ~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L~k~~~~~LGfs  191 (774)
                      .           ..++.       +...                                          ......+|+.
T Consensus        81 ~-----------~v~l~-------p~~~------------------------------------------~~~~~~lGi~  100 (209)
T 3rle_A           81 R-----------ETSVT-------PSNL------------------------------------------WGGQGLLGVS  100 (209)
T ss_dssp             E-----------EEEEC-------CCSS------------------------------------------SSSSSSSCEE
T ss_pred             E-----------EEEEc-------cccc------------------------------------------ccccCccceE
Confidence            0           00000       0000                                          0013456666


Q ss_pred             EeCC---CCCCCCeEEEEecCCChhhhccCCCC-CCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEEEEec
Q psy4897         192 IKGG---KENKMPILISKIFKGMAADQTEQLYV-GDAILSVNGEDLREATHDEAVKALKR-AGKLVELEVKYLR  260 (774)
Q Consensus       192 i~gg---~~~~~pi~Is~V~pgspA~~aG~L~~-GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~~  260 (774)
                      +...   .....+++|..|.++|||+++| |++ ||+|++|||+ +.+  .+++.+++++ .++.+.|+|.|..
T Consensus       101 ~~~~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~~GD~I~~ing~-v~~--~~~l~~~l~~~~g~~v~l~v~r~~  170 (209)
T 3rle_A          101 IRFCSFDGANENVWHVLEVESNSPAALAG-LRPHSDYIIGADTV-MNE--SEDLFSLIETHEAKPLKLYVYNTD  170 (209)
T ss_dssp             EEEEECTTGGGSCEEEEEECTTSHHHHHT-CCTTTEEEEEESSC-CCS--SSCHHHHHHHTTTSCEEEEEEETT
T ss_pred             EeecChhHccccceEEEEeCCCChHHHCC-CCCCCCEEEECCCE-eCC--HHHHHHHHHhCCCCeEEEEEEECC
Confidence            6521   1112579999999999999998 999 9999999998 766  6788888887 5889999998854

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.65  E-value=2.9e-15  Score=168.62  Aligned_cols=156  Identities=21%  Similarity=0.226  Sum_probs=111.7

Q ss_pred             CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecccccceeeeeeccceeeee
Q psy4897          45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVF  124 (774)
Q Consensus        45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~~  124 (774)
                      ..|++|..|.++|||+++| |++||+|++|||++|.++.+..........++.|+|+|.|++.. ..+.           
T Consensus       262 ~~G~~V~~V~~~spA~~aG-L~~GD~I~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~-~~~~-----------  328 (436)
T 4a8c_A          262 QRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKP-LEVE-----------  328 (436)
T ss_pred             CcceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEE-EEEE-----------
Confidence            4689999999999999998 99999999999999998866655554445789999999987522 1111           


Q ss_pred             eecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEEEEeccCCCCcceEEeCC-----CCCC
Q psy4897         125 VSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGG-----KENK  199 (774)
Q Consensus       125 ~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L~k~~~~~LGfsi~gg-----~~~~  199 (774)
                      .++.....     ..             .    .         ..               ...+|+.....     ....
T Consensus       329 v~l~~~~~-----~~-------------~----~---------~~---------------~~~~gl~~~~~~~~~~~~~~  362 (436)
T 4a8c_A          329 VTLDTSTS-----SS-------------A----S---------AE---------------MITPALEGATLSDGQLKDGG  362 (436)
T ss_pred             EEECCCCc-----cc-------------c----c---------cc---------------ccccCceeeecccccccCCC
Confidence            11110000     00             0    0         00               00011111110     0123


Q ss_pred             CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEeccc
Q psy4897         200 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREV  262 (774)
Q Consensus       200 ~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~~  262 (774)
                      .+++|..|.+++||+++| |++||+|++|||+++.+  .+++.++|++.++.+.|+|.|.++.
T Consensus       363 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~~  422 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQIVRGNES  422 (436)
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCeEEEEEEECCEE
Confidence            579999999999999998 99999999999999987  8999999998778999999987653

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=99.61  E-value=4.9e-15  Score=167.38  Aligned_cols=159  Identities=18%  Similarity=0.136  Sum_probs=109.5

Q ss_pred             CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecccccceeeeeeccceeeeee
Q psy4897          46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFV  125 (774)
Q Consensus        46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~~~  125 (774)
                      .|++|..|.++|||+++| |++||+|++|||++|.++.+..........|+.|+|+|.|++.. ..+.+           
T Consensus       282 ~G~~V~~V~~~spA~~aG-L~~GDvI~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~V~R~g~~-~~~~v-----------  348 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAG-LKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKP-LTLSA-----------  348 (451)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEEEETTEE-EEEEE-----------
T ss_pred             ceEEEEecCCCChHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEE-EEEEE-----------
Confidence            689999999999999998 99999999999999998855544443345789999999987522 11111           


Q ss_pred             ecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEEEEeccCCCCcceEEeCC----CCCCCC
Q psy4897         126 SLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGG----KENKMP  201 (774)
Q Consensus       126 tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L~k~~~~~LGfsi~gg----~~~~~p  201 (774)
                      ++............          .                               .....++++.....    .....+
T Consensus       349 ~l~~~~~~~~~~~~----------~-------------------------------~~~~~G~~l~~~~~~~~~~~~~~G  387 (451)
T 3pv2_A          349 VVTDIKSHEQKLQS----------N-------------------------------NPFLYGLALRAFEQESPPHGNVIG  387 (451)
T ss_dssp             ECBCHHHHHHHHHH----------H-------------------------------STTTTTEEEEEEEEECTTSCEEEE
T ss_pred             EEccCCcccccccc----------c-------------------------------cccccccccccCChhHhcccCCCc
Confidence            11100000000000          0                               00001111111000    001246


Q ss_pred             eEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecc
Q psy4897         202 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE  261 (774)
Q Consensus       202 i~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~  261 (774)
                      ++|..|.++|||+++| |++||+|++|||++|.+  .+++.++|++.++.+.|+|.|.+.
T Consensus       388 v~V~~V~~gspA~~aG-L~~GD~I~~Vng~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~  444 (451)
T 3pv2_A          388 VQVVGASENSAGWRAG-IRPGDIIISANKKPVTD--VKSLQTIAQEKKKELLVQVLRGPG  444 (451)
T ss_dssp             EEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHTTSSCSCEEEEEEETTE
T ss_pred             eEEEEECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHhcCCCeEEEEEEECCE
Confidence            8999999999999998 99999999999999987  789999999888899999998754

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.57  E-value=1.4e-14  Score=127.29  Aligned_cols=86  Identities=69%  Similarity=0.942  Sum_probs=80.3

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV   98 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V   98 (774)
                      ...++|++.+.++.+|||+|.+|.+...+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++.+++.+
T Consensus         3 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~v   82 (90)
T 1qav_A            3 LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEV   82 (90)
T ss_dssp             SSCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred             CccEEEEEEeCCCCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            46789999999999999999999887789999999999999999559999999999999999999999999999999999


Q ss_pred             EEEeee
Q psy4897          99 ELEVGV  104 (774)
Q Consensus        99 ~L~V~R  104 (774)
                      +|+|.|
T Consensus        83 ~l~v~r   88 (90)
T 1qav_A           83 VLEVKY   88 (90)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999976

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.56  E-value=1.7e-14  Score=125.59  Aligned_cols=77  Identities=21%  Similarity=0.307  Sum_probs=71.5

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE   99 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~   99 (774)
                      +.++|++.|.+.++|||++.+|       +|..|.+++||+++| |++||+|++|||++|.+++|++++.+|+.++..|+
T Consensus         4 ~~r~v~l~k~~~g~~Gf~i~~g-------~I~~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V~   75 (82)
T 1r6j_A            4 DPRTITMHKDSTGHVGFIFKNG-------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVT   75 (82)
T ss_dssp             CCEEEEEECCTTSCCCEEEETT-------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEE
T ss_pred             ceEEEEEEECCCCCeEEEEECC-------EEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEE
Confidence            5688999999899999999876       378999999999998 99999999999999999999999999999999999


Q ss_pred             EEeee
Q psy4897         100 LEVGV  104 (774)
Q Consensus       100 L~V~R  104 (774)
                      |+|..
T Consensus        76 L~v~p   80 (82)
T 1r6j_A           76 ITIMP   80 (82)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99863

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.54  E-value=2.3e-14  Score=129.54  Aligned_cols=88  Identities=44%  Similarity=0.597  Sum_probs=80.7

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV   98 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V   98 (774)
                      ..+++|++.++++.+|||+|.+|.+...+++|..|.++|||+++++|++||+|++|||++|.++++.+++.+++.++..|
T Consensus         8 ~~~~~v~l~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~v   87 (103)
T 2dc2_A            8 GPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEI   87 (103)
T ss_dssp             -CEEEEEEECCSSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCSEE
T ss_pred             CCcEEEEEEeCCCCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcE
Confidence            45788999999999999999999887779999999999999997459999999999999999999999999999999999


Q ss_pred             EEEeeecc
Q psy4897          99 ELEVGVGY  106 (774)
Q Consensus        99 ~L~V~R~~  106 (774)
                      +|+|.+..
T Consensus        88 ~l~v~~~~   95 (103)
T 2dc2_A           88 EFEVVYVA   95 (103)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecC
Confidence            99998754

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.54  E-value=2.7e-14  Score=124.50  Aligned_cols=85  Identities=46%  Similarity=0.644  Sum_probs=78.0

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE   99 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~   99 (774)
                      ++++|++.+.+..+|||++.+|.+...+++|..|.|+|||+++++|++||+|++|||+++.++++.+++.+++.+++.++
T Consensus         2 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   81 (87)
T 4e34_A            2 PIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIE   81 (87)
T ss_dssp             CCEEEEEECCTTBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCCSEEE
T ss_pred             CEEEEEEEECCCCcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            57889999999999999999998877889999999999999953499999999999999999999999999999999999


Q ss_pred             EEeee
Q psy4897         100 LEVGV  104 (774)
Q Consensus       100 L~V~R  104 (774)
                      |+|.+
T Consensus        82 l~v~~   86 (87)
T 4e34_A           82 FEVVY   86 (87)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88853

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.54  E-value=1.5e-14  Score=134.62  Aligned_cols=92  Identities=35%  Similarity=0.517  Sum_probs=76.1

Q ss_pred             ccCCCCcEEEEEEeecCCcccEEEEccCCC---CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHH
Q psy4897          15 FFSSRDFYSENYKYTENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL   91 (774)
Q Consensus        15 ~~~s~~~~~V~l~rk~~~gLGfsI~GG~e~---~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lL   91 (774)
                      ......+++|+|.|.+..+|||+|.+|.+.   ..+++|..|.|+|||+++|+|++||+|++|||++|.++++.+++.++
T Consensus        19 ~s~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l   98 (120)
T 2iwo_A           19 YFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLL   98 (120)
T ss_dssp             ------CEEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHH
T ss_pred             CCCCCCcEEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            455677899999888888999999998763   35899999999999999966999999999999999999999999999


Q ss_pred             HhcCceEEEEeeecc
Q psy4897          92 KRAGKVVELEVGVGY  106 (774)
Q Consensus        92 k~ag~~V~L~V~R~~  106 (774)
                      +.++..|+|+|.|..
T Consensus        99 ~~~~~~v~l~v~r~g  113 (120)
T 2iwo_A           99 KNASGSIEMQVVAGG  113 (120)
T ss_dssp             HHCCSEEEEEEECCT
T ss_pred             HcCCCeEEEEEEECC
Confidence            999999999998875

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.52  E-value=8.6e-14  Score=122.92  Aligned_cols=88  Identities=38%  Similarity=0.529  Sum_probs=78.4

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCC-----CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHH
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK   92 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~-----~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk   92 (774)
                      |.++++|+|.+. +.+|||+|.+|.+.+     .+++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+++
T Consensus         1 s~~~~~v~l~k~-~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~   79 (94)
T 2fe5_A            1 SMTIMEVNLLKG-PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLK   79 (94)
T ss_dssp             CCCEEEEEEECC-TTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHH
T ss_pred             CcEEEEEEEEEC-CCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            467889999765 678999999987643     48999999999999999889999999999999999999999999999


Q ss_pred             hcCceEEEEeeecc
Q psy4897          93 RAGKVVELEVGVGY  106 (774)
Q Consensus        93 ~ag~~V~L~V~R~~  106 (774)
                      .++..|.|+|.|+.
T Consensus        80 ~~~~~v~l~v~R~g   93 (94)
T 2fe5_A           80 NTSDMVYLKVAKPG   93 (94)
T ss_dssp             TCCSEEEEEEECCC
T ss_pred             cCCCeEEEEEEcCC
Confidence            98889999998753

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.52  E-value=4e-14  Score=131.48  Aligned_cols=91  Identities=26%  Similarity=0.408  Sum_probs=81.3

Q ss_pred             cCCCCcEEEEEEeecCCcccEEEEccCCC---CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHH
Q psy4897          16 FSSRDFYSENYKYTENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK   92 (774)
Q Consensus        16 ~~s~~~~~V~l~rk~~~gLGfsI~GG~e~---~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk   92 (774)
                      ......+.|.+.+.+..+|||+|.+|.+.   ..|++|.+|.++|||+++|+|++||+|++|||+++.++++.+++.+++
T Consensus        20 ~~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~   99 (118)
T 3b76_A           20 FQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLK   99 (118)
T ss_dssp             CEEEEEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHH
T ss_pred             cCCCCcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            44556677888877789999999999743   468999999999999999889999999999999999999999999999


Q ss_pred             hcCceEEEEeeecc
Q psy4897          93 RAGKVVELEVGVGY  106 (774)
Q Consensus        93 ~ag~~V~L~V~R~~  106 (774)
                      .+++.|+|+|.|..
T Consensus       100 ~~~~~v~L~v~R~~  113 (118)
T 3b76_A          100 RTSSSIVLKALEVK  113 (118)
T ss_dssp             SCCSEEEEEEEEEE
T ss_pred             cCCCeEEEEEEECC
Confidence            99999999998754

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.52  E-value=7.7e-14  Score=126.80  Aligned_cols=84  Identities=39%  Similarity=0.548  Sum_probs=72.3

Q ss_pred             EEEEeecCCcccEEEEccCCCCC-----CeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897          24 ENYKYTENNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV   98 (774)
Q Consensus        24 V~l~rk~~~gLGfsI~GG~e~~~-----gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V   98 (774)
                      ..+...++.+|||+|.||.+...     +++|.+|.++|||+++|+|++||+|++|||++|.++++.+++.++++++..|
T Consensus         5 ~~~~~~~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v   84 (106)
T 4amh_A            5 HHLVPRGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFV   84 (106)
T ss_dssp             -------CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEE
T ss_pred             cccCCCCCCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Confidence            45667889999999999988653     8999999999999999889999999999999999999999999999999999


Q ss_pred             EEEeeeccc
Q psy4897          99 ELEVGVGYG  107 (774)
Q Consensus        99 ~L~V~R~~~  107 (774)
                      +|+|.|+..
T Consensus        85 ~l~v~R~~~   93 (106)
T 4amh_A           85 YLKVAKPGS   93 (106)
T ss_dssp             EEEEECCSS
T ss_pred             EEEEEeCCC
Confidence            999998753

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.52  E-value=2.9e-14  Score=130.02  Aligned_cols=89  Identities=27%  Similarity=0.354  Sum_probs=79.7

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCC--CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc-
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA-   94 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~--~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a-   94 (774)
                      +.++++|.|.+++..+|||+|.+|.+.  ..+++|.+|.++|||+++|+|++||+|++|||+++.+++|.+++.+++.+ 
T Consensus         3 ~~~~~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~   82 (108)
T 3cbz_A            3 HMNIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIV   82 (108)
T ss_dssp             -CCEEEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHH
T ss_pred             CceEEEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence            457889999888889999999998654  46899999999999999988999999999999999999999999999987 


Q ss_pred             --CceEEEEeeecc
Q psy4897          95 --GKVVELEVGVGY  106 (774)
Q Consensus        95 --g~~V~L~V~R~~  106 (774)
                        +..|+|+|.|..
T Consensus        83 ~~~~~v~l~v~R~~   96 (108)
T 3cbz_A           83 HKPGPIVLTVAKSG   96 (108)
T ss_dssp             TSSSCEEEEEECCC
T ss_pred             cCCCeEEEEEEeCC
Confidence              457999998864

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.52  E-value=7.9e-14  Score=126.16  Aligned_cols=87  Identities=38%  Similarity=0.526  Sum_probs=78.3

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCC-----CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~-----~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      .++++|++.+.+ .+|||+|.||.+..     .+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++.
T Consensus         2 e~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   80 (105)
T 2awx_A            2 EKIMEIKLIKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKN   80 (105)
T ss_dssp             -CEEEEEEECBT-TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHS
T ss_pred             CeEEEEEEEECC-CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            467889997665 79999999987643     489999999999999998899999999999999999999999999999


Q ss_pred             cCceEEEEeeecc
Q psy4897          94 AGKVVELEVGVGY  106 (774)
Q Consensus        94 ag~~V~L~V~R~~  106 (774)
                      +++.|.|+|.|+.
T Consensus        81 ~~~~v~l~v~R~~   93 (105)
T 2awx_A           81 TSDFVYLKVAKPT   93 (105)
T ss_dssp             CCSEEEEEEECCC
T ss_pred             CCCeEEEEEEcCC
Confidence            9999999998865

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.51  E-value=6.4e-14  Score=122.75  Aligned_cols=85  Identities=28%  Similarity=0.416  Sum_probs=76.3

Q ss_pred             cEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEE
Q psy4897          21 FYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVEL  100 (774)
Q Consensus        21 ~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L  100 (774)
                      +.++++..+.+.+|||+|.+|.+...+++|..|.|+|||+++| |++||+|++|||+++.++++.+++.+++.+++.+.|
T Consensus         2 ~~~~~v~~~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l   80 (89)
T 2q3g_A            2 MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSL   80 (89)
T ss_dssp             EEEEEEEEESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEE
T ss_pred             ccEEEEEEcCCCcccEEEECcCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEE
Confidence            3445555567899999999998877899999999999999998 999999999999999999999999999998999999


Q ss_pred             Eeeecc
Q psy4897         101 EVGVGY  106 (774)
Q Consensus       101 ~V~R~~  106 (774)
                      +|.|+.
T Consensus        81 ~v~R~~   86 (89)
T 2q3g_A           81 GLSRAI   86 (89)
T ss_dssp             EEEEEC
T ss_pred             EEEeCC
Confidence            998864

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.51  E-value=7.6e-14  Score=124.35  Aligned_cols=88  Identities=30%  Similarity=0.369  Sum_probs=79.5

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCC------CeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHH
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKM------PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK   92 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~------gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk   92 (774)
                      ..+++|++.|.+..+|||+|.+|.+...      +++|..|.++|||+++|.|++||+|++|||+++.++++.++..+++
T Consensus         4 e~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~   83 (98)
T 1ihj_A            4 ELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIK   83 (98)
T ss_dssp             CEEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             ceEEEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            3467889988899999999999876543      8999999999999999779999999999999999999999999999


Q ss_pred             hcCceEEEEeeecc
Q psy4897          93 RAGKVVELEVGVGY  106 (774)
Q Consensus        93 ~ag~~V~L~V~R~~  106 (774)
                      .+++.+.|+|.|+.
T Consensus        84 ~~g~~v~l~v~R~g   97 (98)
T 1ihj_A           84 EADFKIELEIQTFD   97 (98)
T ss_dssp             HSCSEEEEEEEEC-
T ss_pred             cCCCeEEEEEEeCC
Confidence            99999999998864

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.50  E-value=1.4e-13  Score=121.17  Aligned_cols=87  Identities=38%  Similarity=0.505  Sum_probs=79.0

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV   98 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V   98 (774)
                      .+.++|++.+.+..+|||+|.++.+ ..|++|..|.++|||+++|.|++||+|++|||+++.++++.++..+++.+++.+
T Consensus         3 ~~~~~v~l~k~~~~~lG~~~~~~~~-~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v   81 (92)
T 2qg1_A            3 SDTLTIGLQKKPGKGLGLSIVGKRN-DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTV   81 (92)
T ss_dssp             -CEEEEEEECCTTSCCSEEEECCSS-SCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEE
T ss_pred             ceEEEEEEEeCCCCcccEEEEeccC-CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            3578899999889999999998754 468999999999999999889999999999999999999999999999999999


Q ss_pred             EEEeeecc
Q psy4897          99 ELEVGVGY  106 (774)
Q Consensus        99 ~L~V~R~~  106 (774)
                      .|+|.|..
T Consensus        82 ~l~v~R~~   89 (92)
T 2qg1_A           82 TLEVGRIS   89 (92)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEccc
Confidence            99998764

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.50  E-value=9.9e-14  Score=121.16  Aligned_cols=84  Identities=27%  Similarity=0.424  Sum_probs=75.6

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE   99 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~   99 (774)
                      ..++|++  +++.+|||+|.+|.+...+++|..|.++|||+++| |++||+|++|||+++.++++.++..+++..++.+.
T Consensus         3 ~~~~v~l--~~~~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~   79 (88)
T 2uzc_A            3 SNYSVSL--VGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLN   79 (88)
T ss_dssp             CEEEEEE--ESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred             cEEEEEE--cCCCcccEEEECcCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            3455555  67789999999998877899999999999999998 99999999999999999999999999998899999


Q ss_pred             EEeeecc
Q psy4897         100 LEVGVGY  106 (774)
Q Consensus       100 L~V~R~~  106 (774)
                      |+|.|+.
T Consensus        80 l~v~R~g   86 (88)
T 2uzc_A           80 MTLQRES   86 (88)
T ss_dssp             EEEECCC
T ss_pred             EEEEeCC
Confidence            9998764

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.50  E-value=1.4e-13  Score=122.09  Aligned_cols=87  Identities=22%  Similarity=0.345  Sum_probs=78.7

Q ss_pred             CCcEEEEEEee-cCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce
Q psy4897          19 RDFYSENYKYT-ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV   97 (774)
Q Consensus        19 ~~~~~V~l~rk-~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~   97 (774)
                      .++++|++.|. .+.+|||+|.++.+ ..|++|.+|.++|||+++|.|++||+|++|||+++.++++.+++..++.+++.
T Consensus         2 ~~~~~v~l~k~~~~~~lG~~~~~~~~-~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~   80 (95)
T 2vwr_A            2 MEILQVALHKRDSGEQLGIKLVRRTD-EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGER   80 (95)
T ss_dssp             EEEEEEEEECSSTTCCCCEEEEECSS-SCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSE
T ss_pred             cEEEEEEEEECCCCCcccEEEEeccC-CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            36788999886 56899999998765 45899999999999999988999999999999999999999999999999999


Q ss_pred             EEEEeeecc
Q psy4897          98 VELEVGVGY  106 (774)
Q Consensus        98 V~L~V~R~~  106 (774)
                      +.|+|.|+.
T Consensus        81 v~l~v~R~~   89 (95)
T 2vwr_A           81 VNLTIARPG   89 (95)
T ss_dssp             EEEEEEEES
T ss_pred             EEEEEEcCC
Confidence            999998865

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.50  E-value=1.1e-13  Score=125.56  Aligned_cols=89  Identities=33%  Similarity=0.416  Sum_probs=78.6

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCC--------CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHH
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKEN--------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK   89 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~--------~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~   89 (774)
                      ....++|++.|. +.+|||+|.++.+.        ..+++|..|.++|||+++|+|++||+|++|||++|.++++.+++.
T Consensus         6 ~~~~~~v~l~k~-~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~   84 (107)
T 1uhp_A            6 SGKSLTLVLHRD-SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVE   84 (107)
T ss_dssp             SSEEEEEEECCS-SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHH
T ss_pred             CcEEEEEEEEeC-CCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            346777888665 89999999998753        468999999999999999559999999999999999999999999


Q ss_pred             HHHhcCceEEEEeeeccc
Q psy4897          90 ALKRAGKVVELEVGVGYG  107 (774)
Q Consensus        90 lLk~ag~~V~L~V~R~~~  107 (774)
                      +++.+++.|.|+|.|..+
T Consensus        85 ~~~~~~~~v~l~v~R~~~  102 (107)
T 1uhp_A           85 AFKTAKEPIVVQVLRRTS  102 (107)
T ss_dssp             HHHHCCSSEEEEEEECCS
T ss_pred             HHHcCCCcEEEEEEeCCC
Confidence            999999999999988653

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.49  E-value=1.5e-13  Score=125.12  Aligned_cols=90  Identities=27%  Similarity=0.304  Sum_probs=79.1

Q ss_pred             cCCCCcEEEEEEeecCCcccEEEEccCC----CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHH
Q psy4897          16 FSSRDFYSENYKYTENNGLGISIKGGKE----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL   91 (774)
Q Consensus        16 ~~s~~~~~V~l~rk~~~gLGfsI~GG~e----~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lL   91 (774)
                      .-+.++++|.+.+. +.+|||+|.+|.+    ...+++|..|.+++||+++|+|++||+|++|||++|.++++.+++.++
T Consensus        11 ~~~~~~~~v~l~k~-~~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l   89 (108)
T 2d92_A           11 LWSPEVKIVELVKD-CKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEIL   89 (108)
T ss_dssp             SSCSSCEEEEEEEC-SSCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHH
T ss_pred             ccCCceEEEEEEEC-CCccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            34567889999776 4799999999876    346899999999999999988999999999999999999999999999


Q ss_pred             Hhc-CceEEEEeeecc
Q psy4897          92 KRA-GKVVELEVGVGY  106 (774)
Q Consensus        92 k~a-g~~V~L~V~R~~  106 (774)
                      +.+ +..|+|+|.|..
T Consensus        90 ~~~~~~~v~l~v~R~~  105 (108)
T 2d92_A           90 KAVPPGLVHLGICSGP  105 (108)
T ss_dssp             HHSCSEEEEEEEECCC
T ss_pred             HhCCCCeEEEEEEcCC
Confidence            995 678999998753

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=1.5e-13  Score=121.13  Aligned_cols=88  Identities=39%  Similarity=0.515  Sum_probs=78.9

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV   97 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~   97 (774)
                      +..+++|++.+ ...+|||+|.++.+...+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++.+++.
T Consensus         3 ~~~~r~v~l~k-~~~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   81 (93)
T 2dkr_A            3 SGSSGVVELPK-TDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGS   81 (93)
T ss_dssp             SSCSCEEEEEC-CTTCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSE
T ss_pred             CCCCEEEEEEe-CCCCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc
Confidence            34577888865 56999999999987778999999999999999966999999999999999999999999999998889


Q ss_pred             EEEEeeecc
Q psy4897          98 VELEVGVGY  106 (774)
Q Consensus        98 V~L~V~R~~  106 (774)
                      |.|+|.|+.
T Consensus        82 v~l~v~r~~   90 (93)
T 2dkr_A           82 VKLVVRSGP   90 (93)
T ss_dssp             EEEEECCCC
T ss_pred             EEEEEEeCC
Confidence            999998754

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.49  E-value=1.9e-13  Score=122.59  Aligned_cols=86  Identities=36%  Similarity=0.482  Sum_probs=77.7

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCC-----CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA   94 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~-----~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a   94 (774)
                      ..++|++.+.+ .+|||+|.+|.+.+     .+++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+++.+
T Consensus         7 ~~~~v~l~~~~-~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   85 (101)
T 2jik_A            7 TEEEINLTRGP-SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA   85 (101)
T ss_dssp             EEEEEEEECCT-TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTC
T ss_pred             ccEEEEEEeCC-CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            56778887655 99999999988753     6899999999999999988999999999999999999999999999999


Q ss_pred             CceEEEEeeecc
Q psy4897          95 GKVVELEVGVGY  106 (774)
Q Consensus        95 g~~V~L~V~R~~  106 (774)
                      ++.|.|+|.|+.
T Consensus        86 g~~v~l~v~R~~   97 (101)
T 2jik_A           86 GYAVSLRVQHRL   97 (101)
T ss_dssp             CSEEEEEEEEES
T ss_pred             CCeEEEEEEeCC
Confidence            999999998865

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.49  E-value=2.1e-13  Score=122.49  Aligned_cols=86  Identities=42%  Similarity=0.527  Sum_probs=77.9

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCC-----CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA   94 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~-----~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a   94 (774)
                      ++++|.+.+ +..+|||+|.+|.+.     ..+++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+++.+
T Consensus         4 ~~~~v~l~k-~~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   82 (102)
T 2i1n_A            4 KYEEIVLER-GNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEA   82 (102)
T ss_dssp             EEEEEEEEC-BTTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHS
T ss_pred             eEEEEEEEE-CCCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            567788865 578999999998764     35899999999999999988999999999999999999999999999999


Q ss_pred             CceEEEEeeecc
Q psy4897          95 GKVVELEVGVGY  106 (774)
Q Consensus        95 g~~V~L~V~R~~  106 (774)
                      ++.|.|+|.|+.
T Consensus        83 g~~v~l~v~R~~   94 (102)
T 2i1n_A           83 GPVVRLVVRRRQ   94 (102)
T ss_dssp             CSEEEEEEEEEC
T ss_pred             CCeEEEEEEeCC
Confidence            999999998875

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.49  E-value=1.4e-13  Score=120.12  Aligned_cols=84  Identities=23%  Similarity=0.376  Sum_probs=77.4

Q ss_pred             EEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEE
Q psy4897          22 YSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELE  101 (774)
Q Consensus        22 ~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~  101 (774)
                      .++++.++++.+|||+|.+|.+...+++|..|.|+|||+++| |++||+|++|||+++.++++.++..+++..++.+.|+
T Consensus         2 ~~~~v~~~~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~   80 (87)
T 2pa1_A            2 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQ   80 (87)
T ss_dssp             EEEEEEECSSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEE
T ss_pred             cEEEEEECCCCccCEEEecccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            367788889999999999998877799999999999999997 9999999999999999999999999999988899999


Q ss_pred             eeecc
Q psy4897         102 VGVGY  106 (774)
Q Consensus       102 V~R~~  106 (774)
                      |.|+.
T Consensus        81 v~R~~   85 (87)
T 2pa1_A           81 LDRIT   85 (87)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            98864

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.49  E-value=1.7e-13  Score=126.64  Aligned_cols=93  Identities=25%  Similarity=0.233  Sum_probs=84.4

Q ss_pred             cccCCCCcEEEEEEeecCCcccEEEEccCCCCC-CeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHH
Q psy4897          14 FFFSSRDFYSENYKYTENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK   92 (774)
Q Consensus        14 ~~~~s~~~~~V~l~rk~~~gLGfsI~GG~e~~~-gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk   92 (774)
                      ........+.|.+.+..+.+|||+|.++.+... +++|.+|.+++||+++|+|++||+|++|||++|.+.++.+++.+++
T Consensus         9 ~~~~~~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~   88 (117)
T 1v62_A            9 TVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLA   88 (117)
T ss_dssp             SSCCSSSSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHH
T ss_pred             cccCCCCcEEEEEEcCCCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            346677899999999888999999999876544 4999999999999999889999999999999999999999999999


Q ss_pred             hcCceEEEEeeecc
Q psy4897          93 RAGKVVELEVGVGY  106 (774)
Q Consensus        93 ~ag~~V~L~V~R~~  106 (774)
                      ++++.|+|+|.|..
T Consensus        89 ~~g~~v~l~v~r~~  102 (117)
T 1v62_A           89 SISEKVRLEILPVP  102 (117)
T ss_dssp             SCSSEEEEEECCBT
T ss_pred             hCCCeEEEEEEECC
Confidence            99999999998865

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.48  E-value=1.4e-13  Score=126.92  Aligned_cols=91  Identities=35%  Similarity=0.384  Sum_probs=82.4

Q ss_pred             cCCCCcEEEEEEeecCCcccEEEEccCCC---------CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHH
Q psy4897          16 FSSRDFYSENYKYTENNGLGISIKGGKEN---------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE   86 (774)
Q Consensus        16 ~~s~~~~~V~l~rk~~~gLGfsI~GG~e~---------~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~e   86 (774)
                      ....++++|.|.+.++.+|||+|.||.+.         ..+++|..|.++|||+++|+|++||+|++|||++|.++++.+
T Consensus        11 ~~~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~   90 (117)
T 2ehr_A           11 SHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSE   90 (117)
T ss_dssp             SCBCCCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHH
T ss_pred             ccCCCCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence            44567899999888889999999998764         268999999999999999889999999999999999999999


Q ss_pred             HHHHHHhcCceEEEEeeecc
Q psy4897          87 AVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        87 aV~lLk~ag~~V~L~V~R~~  106 (774)
                      ++.+++.+++.|.|+|.|..
T Consensus        91 ~~~~~~~~g~~v~l~v~r~~  110 (117)
T 2ehr_A           91 AVEAIKNAGNPVVFIVQSLS  110 (117)
T ss_dssp             HHHHHHTSCSSEEEEECCBS
T ss_pred             HHHHHHcCCCeEEEEEEECC
Confidence            99999999999999998764

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.48  E-value=1.6e-13  Score=127.09  Aligned_cols=90  Identities=41%  Similarity=0.528  Sum_probs=80.0

Q ss_pred             cCCCCcEEEEEEeecCCcccEEEEccCCC-----CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHH
Q psy4897          16 FSSRDFYSENYKYTENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA   90 (774)
Q Consensus        16 ~~s~~~~~V~l~rk~~~gLGfsI~GG~e~-----~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~l   90 (774)
                      .+..++++|.+.+. ..+|||+|.+|.+.     ..+++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+
T Consensus        20 ~~~~~~~~v~l~k~-~~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~   98 (117)
T 2byg_A           20 FQSMTVVEIKLFKG-PKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAI   98 (117)
T ss_dssp             CEEEEEEEEEEECB-TTBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             cCCCceEEEEEEeC-CCCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            44557788888765 49999999998764     3589999999999999998899999999999999999999999999


Q ss_pred             HHhcCceEEEEeeecc
Q psy4897          91 LKRAGKVVELEVGVGY  106 (774)
Q Consensus        91 Lk~ag~~V~L~V~R~~  106 (774)
                      ++.+++.|+|+|.|+.
T Consensus        99 l~~~g~~v~l~v~R~~  114 (117)
T 2byg_A           99 LKNTSEVVYLKVGKPT  114 (117)
T ss_dssp             HHTCCSEEEEEEEEEE
T ss_pred             HHcCCCeEEEEEEeCC
Confidence            9999999999998864

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.48  E-value=2.3e-13  Score=121.31  Aligned_cols=83  Identities=24%  Similarity=0.284  Sum_probs=72.4

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc--Cce
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GKV   97 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a--g~~   97 (774)
                      +.++|.+.|. ..+|||+|.++.  ...+||++|.+||+|+++|.|++||+|++|||++|.+++|.+++++|+.+  +..
T Consensus         5 ~~k~V~l~K~-~~~LG~tI~~~g--~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~   81 (95)
T 3gge_A            5 IEKEVNVYKS-EDSLGLTITDNG--VGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEEL   81 (95)
T ss_dssp             EEEEEEEECC-SSCCCEEEECSS--SSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCE
T ss_pred             eEEEEEEEEC-CCCceEEEEcCC--CCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCE
Confidence            4578888775 499999999642  34589999999999999999999999999999999999999999999995  558


Q ss_pred             EEEEeeec
Q psy4897          98 VELEVGVG  105 (774)
Q Consensus        98 V~L~V~R~  105 (774)
                      ++|.+.++
T Consensus        82 ~~L~lv~p   89 (95)
T 3gge_A           82 FTMKLIEP   89 (95)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEECc
Confidence            88888764

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.48  E-value=2.1e-13  Score=119.53  Aligned_cols=84  Identities=31%  Similarity=0.384  Sum_probs=74.8

Q ss_pred             cEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCc--eE
Q psy4897          21 FYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK--VV   98 (774)
Q Consensus        21 ~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~--~V   98 (774)
                      .++|++.+. ..+|||+|.+|.+...+++|..|.++|||+++|.|++||+|++|||+++.+.++.+++.+++.++.  .|
T Consensus         3 ~~~v~l~~~-~~g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v   81 (90)
T 2q9v_A            3 EQDIFLWRK-ETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHV   81 (90)
T ss_dssp             EEEEEEECB-TTBCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEE
T ss_pred             cEEEEEEEC-CCccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeE
Confidence            456777655 478999999998877889999999999999998899999999999999999999999999998754  89


Q ss_pred             EEEeeec
Q psy4897          99 ELEVGVG  105 (774)
Q Consensus        99 ~L~V~R~  105 (774)
                      .|+|.|.
T Consensus        82 ~l~v~R~   88 (90)
T 2q9v_A           82 NLTVRQT   88 (90)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            9999875

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.48  E-value=2.7e-13  Score=126.55  Aligned_cols=85  Identities=24%  Similarity=0.282  Sum_probs=79.0

Q ss_pred             cEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEE
Q psy4897          21 FYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVEL  100 (774)
Q Consensus        21 ~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L  100 (774)
                      ..+|++.+...++|||+|.||.+...+++|..|.+||||+++|+|++||+|++|||+++.+++|.+++.+++.++..|+|
T Consensus        20 ~~~v~l~k~~~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~v~l   99 (125)
T 3hpk_A           20 PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI   99 (125)
T ss_dssp             EEEEEEECCTTSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEE
T ss_pred             CeEEEEEeCCCCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            45678888888999999999988778999999999999999988999999999999999999999999999999999999


Q ss_pred             Eeeec
Q psy4897         101 EVGVG  105 (774)
Q Consensus       101 ~V~R~  105 (774)
                      +|.|.
T Consensus       100 ~v~r~  104 (125)
T 3hpk_A          100 HYNKL  104 (125)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99874

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.48  E-value=2.4e-13  Score=119.58  Aligned_cols=85  Identities=26%  Similarity=0.413  Sum_probs=77.2

Q ss_pred             cEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEE
Q psy4897          21 FYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVEL  100 (774)
Q Consensus        21 ~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L  100 (774)
                      +.+..+..+.+.+|||++.+|.+...+++|..|.++|||+++| |++||+|++|||+++.++++.++..+++.+++.+.|
T Consensus         2 ~~~~~v~~~~~~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l   80 (91)
T 2pkt_A            2 MTTQQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTL   80 (91)
T ss_dssp             EEEEEEEEESSSCCSEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEE
T ss_pred             CccEEEEECCCCCCCEEEEccCCCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            4455666667899999999998877899999999999999998 999999999999999999999999999999999999


Q ss_pred             Eeeecc
Q psy4897         101 EVGVGY  106 (774)
Q Consensus       101 ~V~R~~  106 (774)
                      +|.|+.
T Consensus        81 ~v~R~g   86 (91)
T 2pkt_A           81 TVARSE   86 (91)
T ss_dssp             EEEEEC
T ss_pred             EEEECC
Confidence            999875

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.47  E-value=3.6e-13  Score=119.46  Aligned_cols=88  Identities=33%  Similarity=0.530  Sum_probs=78.6

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCC---CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA   94 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~---~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a   94 (774)
                      ..+.++|.+.+ .+.+|||+|.+|.+.   ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++.+
T Consensus         3 ~g~~~~v~l~k-~~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   81 (96)
T 1d5g_A            3 PGDIFEVELAK-NDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT   81 (96)
T ss_dssp             TTCEEEEEEEC-SSSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSC
T ss_pred             CCCEEEEEEEe-CCCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            45778888865 468999999998764   35899999999999999987999999999999999999999999999999


Q ss_pred             CceEEEEeeecc
Q psy4897          95 GKVVELEVGVGY  106 (774)
Q Consensus        95 g~~V~L~V~R~~  106 (774)
                      ++.|.|+|.|+.
T Consensus        82 g~~v~l~v~R~~   93 (96)
T 1d5g_A           82 GQVVHLLLEKGQ   93 (96)
T ss_dssp             CSEEEEEEECCS
T ss_pred             CCeEEEEEEcCC
Confidence            999999998764

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.47  E-value=1.3e-13  Score=124.89  Aligned_cols=89  Identities=31%  Similarity=0.507  Sum_probs=79.7

Q ss_pred             cCCCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhC-CCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy4897          16 FSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTE-QLYVGDAILSVNGEDLREATHDEAVKALKRA   94 (774)
Q Consensus        16 ~~s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG-~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a   94 (774)
                      .....++.+.+.+...++|||+|.+|.+...+++|..|.++|||+++| +|++||+|++|||++|.+++|.+++.+++.+
T Consensus        13 ~~~~~~~~v~l~~~~~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~   92 (107)
T 3nfk_A           13 IPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS   92 (107)
T ss_dssp             ---CCCEEEEECCCTTSCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCG
T ss_pred             CCCCCEEEEEEEcCCCCCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            456778999998888899999999998877789999999999999998 4999999999999999999999999999998


Q ss_pred             Cc----eEEEEeee
Q psy4897          95 GK----VVELEVGV  104 (774)
Q Consensus        95 g~----~V~L~V~R  104 (774)
                      ++    .|.|+|.|
T Consensus        93 ~~~~~~~v~l~v~r  106 (107)
T 3nfk_A           93 CERHSGELMLLVRP  106 (107)
T ss_dssp             GGSBTTBEEEEEEC
T ss_pred             cccCCcEEEEEEEc
Confidence            75    89999876

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.47  E-value=2.8e-13  Score=124.18  Aligned_cols=91  Identities=30%  Similarity=0.613  Sum_probs=79.5

Q ss_pred             ccCCCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy4897          15 FFSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA   94 (774)
Q Consensus        15 ~~~s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a   94 (774)
                      ..+..++++|.+.+. ..+|||+|.+|.+...+++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++.+
T Consensus        19 ~~~~~~~~~v~l~~~-~~glG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   97 (112)
T 2r4h_A           19 YFQSMDFYTVELERG-AKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNG   97 (112)
T ss_dssp             ----CCEEEEEEECB-TTBTSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTT
T ss_pred             ccCCCceEEEEEEcC-CCccCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            356778889999654 5789999999987778999999999999999977999999999999999999999999999999


Q ss_pred             CceEEEEeeecc
Q psy4897          95 GKVVELEVGVGY  106 (774)
Q Consensus        95 g~~V~L~V~R~~  106 (774)
                      ++.|.|+|.|+.
T Consensus        98 g~~v~l~v~R~~  109 (112)
T 2r4h_A           98 GRRVRLFLKRGE  109 (112)
T ss_dssp             TTEEEEEEECCE
T ss_pred             CCeEEEEEEeCC
Confidence            999999998764

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.47  E-value=1.1e-13  Score=124.89  Aligned_cols=86  Identities=27%  Similarity=0.379  Sum_probs=77.6

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc--Cce
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GKV   97 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a--g~~   97 (774)
                      ..++|++.+ +..+|||+|.+|.+...+++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++.+  ++.
T Consensus         9 ~~~~v~l~~-~~~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~   87 (103)
T 1uep_A            9 KELDVHLRR-MESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQ   87 (103)
T ss_dssp             EEECCEEES-SSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTE
T ss_pred             eEEEEEEEe-CCCccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCc
Confidence            456667765 67899999999988778999999999999999988999999999999999999999999999987  789


Q ss_pred             EEEEeeecc
Q psy4897          98 VELEVGVGY  106 (774)
Q Consensus        98 V~L~V~R~~  106 (774)
                      |+|+|.|+.
T Consensus        88 v~l~v~R~~   96 (103)
T 1uep_A           88 VNLTVRRKV   96 (103)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEeCC
Confidence            999998864

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.47  E-value=1.1e-13  Score=128.28  Aligned_cols=95  Identities=36%  Similarity=0.496  Sum_probs=78.7

Q ss_pred             ccccccCCCCcEEEEEEeecCCcccEEEEccCCC---CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHH
Q psy4897          11 TEAFFFSSRDFYSENYKYTENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA   87 (774)
Q Consensus        11 ~~~~~~~s~~~~~V~l~rk~~~gLGfsI~GG~e~---~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~ea   87 (774)
                      ...+.......++|+|.|.. .+|||+|.+|.+.   ..+++|..|.|+|||+++|+|++||+|++|||++|.++++.++
T Consensus        16 ~~~~~~~~~~~~~v~L~k~~-~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~   94 (117)
T 2fne_A           16 ENLYFQSMPQCKSITLERGP-DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEA   94 (117)
T ss_dssp             -------CCEEEEEEECCBT-TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHH
T ss_pred             ccccccCCCccEEEEEEeCC-CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            33444556677888886655 8999999998754   3589999999999999998899999999999999999999999


Q ss_pred             HHHHHhcCceEEEEeeecc
Q psy4897          88 VKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        88 V~lLk~ag~~V~L~V~R~~  106 (774)
                      +.+++.++..|+|+|.|..
T Consensus        95 ~~~l~~~~~~v~l~v~R~g  113 (117)
T 2fne_A           95 VAILKRTKGTVTLMVLSSD  113 (117)
T ss_dssp             HHHHHHCCSSEEEEEEECS
T ss_pred             HHHHHcCCCeEEEEEEeCC
Confidence            9999998888999998865

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.47  E-value=4.2e-13  Score=119.48  Aligned_cols=87  Identities=32%  Similarity=0.465  Sum_probs=77.8

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV   98 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V   98 (774)
                      .++++|.+ ++..++|||+|.++.+...+++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+++.+++.|
T Consensus         4 ~~~~~v~l-~~~~~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v   82 (97)
T 1n7e_A            4 AIIYTVEL-KRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETV   82 (97)
T ss_dssp             CCEEEEEE-ECTTSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred             ceEEEEEE-EeCCCCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            45677888 55678899999988766679999999999999999779999999999999999999999999999889999


Q ss_pred             EEEeeecc
Q psy4897          99 ELEVGVGY  106 (774)
Q Consensus        99 ~L~V~R~~  106 (774)
                      .|+|.|+.
T Consensus        83 ~l~v~R~~   90 (97)
T 1n7e_A           83 TLKIKKQT   90 (97)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEeCC
Confidence            99998865

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=3e-13  Score=125.35  Aligned_cols=90  Identities=34%  Similarity=0.419  Sum_probs=80.2

Q ss_pred             cCCCCcEEEEEEeecCCcccEEEEccCCC-----CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHH
Q psy4897          16 FSSRDFYSENYKYTENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA   90 (774)
Q Consensus        16 ~~s~~~~~V~l~rk~~~gLGfsI~GG~e~-----~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~l   90 (774)
                      ......++|+|.+.. .+|||+|.+|.+.     ..+++|..|.+++||+++|+|++||+|++|||++|.+++|.+++.+
T Consensus        13 ~~~~~~~~v~l~r~~-~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~   91 (120)
T 2eno_A           13 DYLVTEEEINLTRGP-SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDL   91 (120)
T ss_dssp             CEEEEEEEEEEECCS-SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHH
T ss_pred             CCCCceEEEEEEECC-CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            344567788887655 9999999998774     5689999999999999998899999999999999999999999999


Q ss_pred             HHhcCceEEEEeeecc
Q psy4897          91 LKRAGKVVELEVGVGY  106 (774)
Q Consensus        91 Lk~ag~~V~L~V~R~~  106 (774)
                      ++.+++.|.|+|.|+.
T Consensus        92 ~~~~g~~v~l~v~R~~  107 (120)
T 2eno_A           92 FRNAGYAVSLRVQHRL  107 (120)
T ss_dssp             HHHHCSEEEEEEEEEE
T ss_pred             HHcCCCeEEEEEEeCC
Confidence            9999999999998865

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.46  E-value=2e-13  Score=123.57  Aligned_cols=85  Identities=31%  Similarity=0.387  Sum_probs=75.0

Q ss_pred             cEEEEEEeecCCcccEEEEccCCCCCCe-EEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-----c
Q psy4897          21 FYSENYKYTENNGLGISIKGGKENKMPI-LISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-----A   94 (774)
Q Consensus        21 ~~~V~l~rk~~~gLGfsI~GG~e~~~gi-~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~-----a   94 (774)
                      .+.|.+ +++..+|||+|.||.+...++ +|..|.+++||+++|+|++||+|++|||+++.+++|++++.+|+.     .
T Consensus         7 ~~~v~l-~k~~~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~   85 (103)
T 1ufx_A            7 GTLVRV-KKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKD   85 (103)
T ss_dssp             SEEEEE-ECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSS
T ss_pred             eEEEEE-EcCCCcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCC
Confidence            455666 677899999999998876554 999999999999998899999999999999999999999999998     4


Q ss_pred             CceEEEEeeecc
Q psy4897          95 GKVVELEVGVGY  106 (774)
Q Consensus        95 g~~V~L~V~R~~  106 (774)
                      ++.+.|.|.|..
T Consensus        86 ~~~i~l~v~r~~   97 (103)
T 1ufx_A           86 RDYIDFLVTEFN   97 (103)
T ss_dssp             CSEEEEEECCCC
T ss_pred             CCeEEEEEEEcc
Confidence            778899998764

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.46  E-value=4.5e-13  Score=121.04  Aligned_cols=88  Identities=28%  Similarity=0.400  Sum_probs=80.1

Q ss_pred             CCCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCc
Q psy4897          17 SSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK   96 (774)
Q Consensus        17 ~s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~   96 (774)
                      .....++|++.+.++++|||+|.++.+...+++|..|.+++||+++| |++||+|++|||++|.++++.+++.+++. ++
T Consensus        12 ~~~~~~~v~l~k~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~   89 (104)
T 1wi2_A           12 TQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKT-AR   89 (104)
T ss_dssp             CSSCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHH-SS
T ss_pred             CCCCCEEEEEEeCCCCCccEEEEcccCCCCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC-CC
Confidence            34456889998888899999999988777899999999999999998 99999999999999999999999999998 78


Q ss_pred             eEEEEeeecc
Q psy4897          97 VVELEVGVGY  106 (774)
Q Consensus        97 ~V~L~V~R~~  106 (774)
                      .+.|+|.|..
T Consensus        90 ~v~l~v~r~~   99 (104)
T 1wi2_A           90 EISMRVRFFS   99 (104)
T ss_dssp             SEEEEEECCC
T ss_pred             EEEEEEEECC
Confidence            8999998754

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.46  E-value=3.2e-13  Score=118.58  Aligned_cols=85  Identities=19%  Similarity=0.321  Sum_probs=75.3

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE   99 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~   99 (774)
                      .++.|.+.|.++.+|||+|.++.  ..+++|.+|.+||||+++++|++||+|++|||+++.++++++++.+++..+..|+
T Consensus         1 ~~r~V~l~K~~~~~lG~~i~~~~--~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~   78 (88)
T 1kwa_A            1 RSRLVQFQKNTDEPMGITLKMNE--LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSIT   78 (88)
T ss_dssp             CCEEEEEEECSSSCCCEEEECSC--GGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEE
T ss_pred             CeEEEEEEeCCCCceeEEEEeCC--CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEE
Confidence            36789999998999999999742  2579999999999999955699999999999999999999999999999877899


Q ss_pred             EEeeecc
Q psy4897         100 LEVGVGY  106 (774)
Q Consensus       100 L~V~R~~  106 (774)
                      |+|.|..
T Consensus        79 l~v~r~~   85 (88)
T 1kwa_A           79 FKIVPSY   85 (88)
T ss_dssp             EEEECCC
T ss_pred             EEEECCc
Confidence            9997753

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.46  E-value=4.8e-13  Score=115.99  Aligned_cols=82  Identities=26%  Similarity=0.379  Sum_probs=72.6

Q ss_pred             EEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc--CceEE
Q psy4897          22 YSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GKVVE   99 (774)
Q Consensus        22 ~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a--g~~V~   99 (774)
                      ++|++.+ +..+|||++.+|.+...+++|..|.|+|||+++|.|++||+|++|||+++.++++.++..+++..  ++.+.
T Consensus         2 ~~v~l~k-~~~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~   80 (85)
T 2i04_A            2 IHTKLRK-SSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVD   80 (85)
T ss_dssp             EEEEEEC-BTTBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEE
T ss_pred             EEEEEEE-CCCCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEE
Confidence            3566654 56799999999877777899999999999999987999999999999999999999999999986  78899


Q ss_pred             EEeee
Q psy4897         100 LEVGV  104 (774)
Q Consensus       100 L~V~R  104 (774)
                      |+|.|
T Consensus        81 l~v~R   85 (85)
T 2i04_A           81 LELCR   85 (85)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88864

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.46  E-value=3.6e-13  Score=119.83  Aligned_cols=86  Identities=26%  Similarity=0.366  Sum_probs=75.6

Q ss_pred             CCCcEEEEEEeecCCcccEEEEc-------cCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHH
Q psy4897          18 SRDFYSENYKYTENNGLGISIKG-------GKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA   90 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~G-------G~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~l   90 (774)
                      +...++|++.|.+..+|||+|.+       +.+...+++|..|.++|||+++| |++||+|++|||+++.++++.+++.+
T Consensus         2 ~~~~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~   80 (96)
T 2ego_A            2 SQQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDI   80 (96)
T ss_dssp             CCCEEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCccEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHH
Confidence            34568899999888999999997       33345689999999999999998 99999999999999999999999999


Q ss_pred             HHhcCceEEEEeee
Q psy4897          91 LKRAGKVVELEVGV  104 (774)
Q Consensus        91 Lk~ag~~V~L~V~R  104 (774)
                      ++..+..|.|+|.+
T Consensus        81 l~~~~~~v~l~v~~   94 (96)
T 2ego_A           81 IKASGNVLRLETLY   94 (96)
T ss_dssp             HHHTTTEEEEEEEC
T ss_pred             HHhCCCeEEEEEEE
Confidence            99988899999865

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.46  E-value=3.1e-13  Score=120.12  Aligned_cols=86  Identities=30%  Similarity=0.464  Sum_probs=77.1

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCC----CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcC
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKEN----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG   95 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~----~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag   95 (774)
                      +.++|++.+ ++.+|||+|.++.+.    ..+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++.++
T Consensus         3 ~~~~v~l~k-~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g   81 (97)
T 2jil_A            3 RTVEVTLHK-EGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG   81 (97)
T ss_dssp             EEEEEEEEC-BTTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             eEEEEEEEe-CCCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            466778854 678999999998754    368999999999999999879999999999999999999999999999999


Q ss_pred             ceEEEEeeecc
Q psy4897          96 KVVELEVGVGY  106 (774)
Q Consensus        96 ~~V~L~V~R~~  106 (774)
                      +.+.|+|.|+.
T Consensus        82 ~~v~l~v~R~~   92 (97)
T 2jil_A           82 QEAALLIEYDV   92 (97)
T ss_dssp             SEEEEEEEEEC
T ss_pred             CeEEEEEEeCC
Confidence            99999999865

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.46  E-value=5e-13  Score=118.10  Aligned_cols=87  Identities=24%  Similarity=0.374  Sum_probs=76.1

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV   97 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~   97 (774)
                      +..++.|.+.+. +.+|||+|.++ +...+++|.+|.++|||+++|.|++||+|++|||+++.+.++.+++.+++.++..
T Consensus         2 ~~~~r~v~l~k~-~~~lG~~i~~~-~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   79 (93)
T 3o46_A            2 SDSVKIIRLVKN-REPLGATIKKD-EQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGA   79 (93)
T ss_dssp             --CCEEEEEEES-SSCCCEEEEEC-TTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEE
T ss_pred             CccEEEEEEEeC-CCCccEEEEec-CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            356788899876 56999999986 4456899999999999999988999999999999999999999999999999889


Q ss_pred             EEEEeeecc
Q psy4897          98 VELEVGVGY  106 (774)
Q Consensus        98 V~L~V~R~~  106 (774)
                      |+|+|.+..
T Consensus        80 v~l~v~~~~   88 (93)
T 3o46_A           80 ITFKIIPGS   88 (93)
T ss_dssp             EEEEEECC-
T ss_pred             EEEEEEeCC
Confidence            999997653

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.46  E-value=5.5e-13  Score=117.11  Aligned_cols=86  Identities=16%  Similarity=0.175  Sum_probs=76.9

Q ss_pred             CCCcEEEEEEeecC-CcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCc
Q psy4897          18 SRDFYSENYKYTEN-NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK   96 (774)
Q Consensus        18 s~~~~~V~l~rk~~-~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~   96 (774)
                      ..++++|++.+.+. .+|||+|.++... .|++|..|.++|||+++| |++||+|++|||+++.++++.+++.+++..++
T Consensus         4 ~~~~~~v~l~k~~~~~~~G~~~~~~~~~-~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~   81 (91)
T 1m5z_A            4 PVELHKVTLYKDSGMEDFGFSVADGLLE-KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGN   81 (91)
T ss_dssp             CCEEEEEEEECCTTCSSSSEEEEECTTS-SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTSTT
T ss_pred             CcceEEEEEEECCCCCCccEEEEeccCC-CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            45678889988766 6899999987653 689999999999999998 99999999999999999999999999999899


Q ss_pred             eEEEEeeec
Q psy4897          97 VVELEVGVG  105 (774)
Q Consensus        97 ~V~L~V~R~  105 (774)
                      .+.|+|.|+
T Consensus        82 ~v~l~v~R~   90 (91)
T 1m5z_A           82 KLDLVISRN   90 (91)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEeC
Confidence            999999774

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.46  E-value=3.8e-13  Score=122.96  Aligned_cols=89  Identities=22%  Similarity=0.282  Sum_probs=77.3

Q ss_pred             cCCCCcEEEEEEeecCCcccEEEEccCCCC--CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          16 FSSRDFYSENYKYTENNGLGISIKGGKENK--MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        16 ~~s~~~~~V~l~rk~~~gLGfsI~GG~e~~--~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      ....+++.|++.+.  .+|||+|.||.+..  .+++|.+|.+++||+++|+|++||+|++|||+++.+++|.+++.+|+.
T Consensus        11 ~~~~~~~~v~l~k~--~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~   88 (109)
T 1wi4_A           11 DRDPAFRVITVTKE--TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITR   88 (109)
T ss_dssp             CCCTTEEEEEECCS--SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHH
T ss_pred             CCCCcEEEEEEeCC--CccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            44567778888553  89999999997643  479999999999999998899999999999999999999999999998


Q ss_pred             cC----ceEEEEeeecc
Q psy4897          94 AG----KVVELEVGVGY  106 (774)
Q Consensus        94 ag----~~V~L~V~R~~  106 (774)
                      +.    ..++|.|.|+.
T Consensus        89 ~~~r~~~~~~l~v~R~~  105 (109)
T 1wi4_A           89 AKLRSESPWEIAFIRSG  105 (109)
T ss_dssp             SCCSSSSCEEEEEECCC
T ss_pred             cccCCCceEEEEEEeCC
Confidence            65    67888888865

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.46  E-value=1.8e-13  Score=118.66  Aligned_cols=81  Identities=32%  Similarity=0.486  Sum_probs=73.1

Q ss_pred             EEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEE
Q psy4897          22 YSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELE  101 (774)
Q Consensus        22 ~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~  101 (774)
                      ++|++  +.+.+|||+|.+|.+...+++|..|.|+|||+++| |++||+|++|||+++.++++.+++.+++.+++.+.|+
T Consensus         3 ~~v~l--~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~   79 (85)
T 1rgw_A            3 YSVTL--TGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLT   79 (85)
T ss_dssp             EEEEE--CCSSCCCEEECCCGGGTSCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEE
T ss_pred             EEEEE--eCCCccCEEEEeccCCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEE
Confidence            44555  56789999999998877899999999999999987 9999999999999999999999999999888889999


Q ss_pred             eeec
Q psy4897         102 VGVG  105 (774)
Q Consensus       102 V~R~  105 (774)
                      |.|+
T Consensus        80 v~R~   83 (85)
T 1rgw_A           80 LQKS   83 (85)
T ss_dssp             EESC
T ss_pred             EEeC
Confidence            9875

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.46  E-value=1.9e-13  Score=128.17  Aligned_cols=91  Identities=22%  Similarity=0.338  Sum_probs=82.3

Q ss_pred             cCCCCcEEEEEEeecCCcccEEEEccCCCC---CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecC-CCCHHHHHHHH
Q psy4897          16 FSSRDFYSENYKYTENNGLGISIKGGKENK---MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR-EATHDEAVKAL   91 (774)
Q Consensus        16 ~~s~~~~~V~l~rk~~~gLGfsI~GG~e~~---~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~-~~sh~eaV~lL   91 (774)
                      .....+++|++.+....+|||+|.+|.+..   .|++|..|.+++||+++|+|++||+|++|||++|. ++++.+++.++
T Consensus        21 ~~~~~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l  100 (128)
T 2db5_A           21 AQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALL  100 (128)
T ss_dssp             HTTCEEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHH
T ss_pred             cccCceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHH
Confidence            346678889998888899999999987653   48999999999999999889999999999999998 99999999999


Q ss_pred             HhcCceEEEEeeecc
Q psy4897          92 KRAGKVVELEVGVGY  106 (774)
Q Consensus        92 k~ag~~V~L~V~R~~  106 (774)
                      +.+++.|.|+|.|+.
T Consensus       101 ~~~~~~v~l~v~r~~  115 (128)
T 2db5_A          101 QQTTGSLRLIVAREP  115 (128)
T ss_dssp             HHCCSEEEEEEEECC
T ss_pred             HcCCCeEEEEEEcCC
Confidence            999999999998864

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.45  E-value=1.8e-13  Score=126.42  Aligned_cols=88  Identities=31%  Similarity=0.369  Sum_probs=78.2

Q ss_pred             CCcEEEEEEeec------CCcccEEEEccCCCC-----CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHH
Q psy4897          19 RDFYSENYKYTE------NNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA   87 (774)
Q Consensus        19 ~~~~~V~l~rk~------~~gLGfsI~GG~e~~-----~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~ea   87 (774)
                      -...+|++.+..      +.+|||+|.|+.+.+     .+++|..|.++|||+++|+|++||+|++|||++|.+++|.++
T Consensus        11 ~~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~   90 (117)
T 1ujd_A           11 FPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEV   90 (117)
T ss_dssp             SCEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHH
T ss_pred             CceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHH
Confidence            345677777766      589999999987643     489999999999999998899999999999999999999999


Q ss_pred             HHHHHhcCceEEEEeeecc
Q psy4897          88 VKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        88 V~lLk~ag~~V~L~V~R~~  106 (774)
                      +.+++.+++.|.|+|.|+.
T Consensus        91 ~~~l~~~~~~v~l~v~R~~  109 (117)
T 1ujd_A           91 QSIISQQSGEAEICVRLDL  109 (117)
T ss_dssp             HHHHSCCSSCEEEEEESSC
T ss_pred             HHHHhcCCCEEEEEEEECC
Confidence            9999999999999998865

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.45  E-value=3.3e-13  Score=127.66  Aligned_cols=88  Identities=18%  Similarity=0.319  Sum_probs=79.1

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCC------------CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHH
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENK------------MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD   85 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~------------~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~   85 (774)
                      ....++|++.|++.++|||+|.++.+..            .|++|..|.+||||+++| |++||+|++|||++|.++++.
T Consensus        25 ~~~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~  103 (132)
T 3l4f_D           25 IIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHR  103 (132)
T ss_dssp             CCCCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSCHH
T ss_pred             CCCCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHH
Confidence            3456689999989999999999987632            379999999999999998 999999999999999999999


Q ss_pred             HHHHHHHhcCceEEEEeeecc
Q psy4897          86 EAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        86 eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      +++.+++++++.|.|+|.+..
T Consensus       104 ~~~~~l~~~g~~v~l~v~~~~  124 (132)
T 3l4f_D          104 QVVNMIRQGGNTLMVKVVMVT  124 (132)
T ss_dssp             HHHHHHHHTTTEEEEEEECCC
T ss_pred             HHHHHHHcCCCEEEEEEEECC
Confidence            999999999999999998754

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.45  E-value=1.7e-13  Score=126.22  Aligned_cols=90  Identities=28%  Similarity=0.442  Sum_probs=82.3

Q ss_pred             CCCCcEEEEEEeecCCcccEEEEccCCC---CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecC-CCCHHHHHHHHH
Q psy4897          17 SSRDFYSENYKYTENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR-EATHDEAVKALK   92 (774)
Q Consensus        17 ~s~~~~~V~l~rk~~~gLGfsI~GG~e~---~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~-~~sh~eaV~lLk   92 (774)
                      ...++++|.+.+.++.+|||+|.++.+.   ..|++|..|.++|||+++|+|++||+|++|||++|. ++++.+++.+++
T Consensus        17 ~~~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~   96 (117)
T 2o2t_A           17 QGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQ   96 (117)
T ss_dssp             TTSCEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHH
T ss_pred             cCCeEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHH
Confidence            4578999999998899999999998743   358999999999999999889999999999999998 999999999999


Q ss_pred             hcCceEEEEeeecc
Q psy4897          93 RAGKVVELEVGVGY  106 (774)
Q Consensus        93 ~ag~~V~L~V~R~~  106 (774)
                      .+++.|.|+|.|+.
T Consensus        97 ~~~~~v~l~v~R~~  110 (117)
T 2o2t_A           97 KAKDTVQLVIARGS  110 (117)
T ss_dssp             HCCSEEEEEEESSC
T ss_pred             cCCCEEEEEEEeCC
Confidence            99999999998875

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.45  E-value=1.3e-13  Score=129.95  Aligned_cols=88  Identities=30%  Similarity=0.451  Sum_probs=77.3

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCC---CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA   94 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e---~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a   94 (774)
                      ..++++|++.+ +..+|||+|.||.+   ...+++|.+|.+|+||+++|+|++||+|++|||++|.+++|.+++.+++.+
T Consensus        27 ~~~~~~v~l~k-~~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~  105 (130)
T 1i16_A           27 EATVCTVTLEK-MSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL  105 (130)
T ss_dssp             SEEEEEEEEET-TSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTS
T ss_pred             CCcEEEEEEEc-CCCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            45677788865 47899999999987   356899999999999999967999999999999999999999999999998


Q ss_pred             C-ceEEEEeeecc
Q psy4897          95 G-KVVELEVGVGY  106 (774)
Q Consensus        95 g-~~V~L~V~R~~  106 (774)
                      + ..|.|+|.|..
T Consensus       106 ~~~~v~l~v~r~~  118 (130)
T 1i16_A          106 PDGPVTIVIRRKS  118 (130)
T ss_dssp             CSSEEEEEEEEES
T ss_pred             CCceEEEEEEeCC
Confidence            5 46999998764

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.45  E-value=5.3e-13  Score=120.79  Aligned_cols=87  Identities=32%  Similarity=0.501  Sum_probs=76.6

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCC---CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA   94 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e---~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a   94 (774)
                      ..+.++|++  ++..+|||+|.+|.+   ...+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++.+
T Consensus         9 ~~~~~~v~l--~~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~   86 (106)
T 3axa_A            9 EPEIITVTL--KKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRT   86 (106)
T ss_dssp             -CCEEEEEE--ECSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             CceEEEEEE--CCCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            445566666  678999999998754   345899999999999999988999999999999999999999999999999


Q ss_pred             CceEEEEeeecc
Q psy4897          95 GKVVELEVGVGY  106 (774)
Q Consensus        95 g~~V~L~V~R~~  106 (774)
                      ++.|.|+|.|+.
T Consensus        87 g~~v~l~v~R~~   98 (106)
T 3axa_A           87 SSVVTLEVAKQG   98 (106)
T ss_dssp             CSEEEEEEECCC
T ss_pred             CCeEEEEEEeCC
Confidence            999999998875

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.45  E-value=1.8e-13  Score=126.62  Aligned_cols=91  Identities=31%  Similarity=0.495  Sum_probs=81.7

Q ss_pred             cCCCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhh-CCCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy4897          16 FSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQT-EQLYVGDAILSVNGEDLREATHDEAVKALKRA   94 (774)
Q Consensus        16 ~~s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAara-G~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a   94 (774)
                      .....+++|++.+...++|||+|.+|.+...+++|..|.++|||+++ |+|++||+|++|||++|.+++|.+++.+++.+
T Consensus        11 ~~~~~~~~v~l~k~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~   90 (119)
T 2cs5_A           11 IPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS   90 (119)
T ss_dssp             CCSSCCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHH
T ss_pred             cCCCCeEEEEEEeCCCCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            44567889999888888999999999887778999999999999999 45999999999999999999999999999988


Q ss_pred             Cc----eEEEEeeecc
Q psy4897          95 GK----VVELEVGVGY  106 (774)
Q Consensus        95 g~----~V~L~V~R~~  106 (774)
                      +.    .|.|+|.|+.
T Consensus        91 ~~~~~~~v~l~v~R~~  106 (119)
T 2cs5_A           91 CERHSGELMLLVRPNA  106 (119)
T ss_dssp             HHCCSSCEEEEEECCC
T ss_pred             cccCCCEEEEEEEccc
Confidence            54    8999998864

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.44  E-value=4.2e-13  Score=124.07  Aligned_cols=94  Identities=26%  Similarity=0.370  Sum_probs=80.9

Q ss_pred             ccccCCCCcEEEEEEeecCCcccEEEEccCCC-CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHH
Q psy4897          13 AFFFSSRDFYSENYKYTENNGLGISIKGGKEN-KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL   91 (774)
Q Consensus        13 ~~~~~s~~~~~V~l~rk~~~gLGfsI~GG~e~-~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lL   91 (774)
                      .......+++.|.+.+++..+|||+|.++.+. ..|++|..|.+++||+++|+|++||+|++|||++|.++++.+++.++
T Consensus         8 ~~~~~~~~~~~v~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l   87 (119)
T 1x6d_A            8 ATLKQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAIL   87 (119)
T ss_dssp             CSCSSCTTEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHH
T ss_pred             hhcCCCCCeEEEEEEeCCCCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            33455677888888888999999999998874 57899999999999999988999999999999999999999999999


Q ss_pred             HhcCceE-EEEeeecc
Q psy4897          92 KRAGKVV-ELEVGVGY  106 (774)
Q Consensus        92 k~ag~~V-~L~V~R~~  106 (774)
                      +.++..+ .++|.|+.
T Consensus        88 ~~~~~~~~~l~v~R~~  103 (119)
T 1x6d_A           88 RQAREPRQAVIVTRKL  103 (119)
T ss_dssp             HHTTSSSEEEEEEECC
T ss_pred             HhCCCCeEEEEEEcCC
Confidence            9876554 46776654

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.44  E-value=7.9e-13  Score=117.39  Aligned_cols=85  Identities=38%  Similarity=0.507  Sum_probs=75.5

Q ss_pred             CcEEEEEEeecCCcccEEEEccCC------CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKE------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e------~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      +-+.+.+.+. .++|||+|.+|.+      ...+++|..|.++|||+++| |++||+|++|||+++.++++.+++..++.
T Consensus         3 ~~~~v~~~~~-~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~   80 (97)
T 2w4f_A            3 EELTLTILRQ-TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRG   80 (97)
T ss_dssp             CEEEEEEECB-TTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             eEEEEEEEeC-CCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhC
Confidence            4456677554 8899999999876      34789999999999999998 99999999999999999999999999988


Q ss_pred             cCceEEEEeeecc
Q psy4897          94 AGKVVELEVGVGY  106 (774)
Q Consensus        94 ag~~V~L~V~R~~  106 (774)
                      +++.|.|+|.|++
T Consensus        81 ~g~~v~l~v~R~g   93 (97)
T 2w4f_A           81 AGTAVQMRVWRER   93 (97)
T ss_dssp             SCSEEEEEEECCS
T ss_pred             CCCeEEEEEEeCC
Confidence            9999999999875

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.43  E-value=8.3e-13  Score=119.79  Aligned_cols=90  Identities=26%  Similarity=0.368  Sum_probs=79.1

Q ss_pred             CCCCcEEEEEE-eecCCcccEEEEccCCC-----CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHH
Q psy4897          17 SSRDFYSENYK-YTENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA   90 (774)
Q Consensus        17 ~s~~~~~V~l~-rk~~~gLGfsI~GG~e~-----~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~l   90 (774)
                      ...+.++|++. +++..+|||+|.++.+.     ..+++|..|.++|||+++|.|++||+|++|||++|.++++.+++.+
T Consensus         9 ~~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~   88 (108)
T 2jre_A            9 SGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEV   88 (108)
T ss_dssp             SSCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHH
T ss_pred             cCcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            34456777887 47789999999988653     3589999999999999998899999999999999999999999999


Q ss_pred             HHhcCceEEEEeeecc
Q psy4897          91 LKRAGKVVELEVGVGY  106 (774)
Q Consensus        91 Lk~ag~~V~L~V~R~~  106 (774)
                      ++.+++.|.|+|.|+.
T Consensus        89 l~~~g~~v~l~v~R~~  104 (108)
T 2jre_A           89 LRNAGNPVRLLLIRRL  104 (108)
T ss_dssp             HHHHCSEEEEEEEECC
T ss_pred             HHcCCCeEEEEEEeCC
Confidence            9999999999998865

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.43  E-value=6.6e-13  Score=117.91  Aligned_cols=86  Identities=20%  Similarity=0.328  Sum_probs=76.2

Q ss_pred             CCcEEEEEEeecCCcccEEEEc--cCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCc
Q psy4897          19 RDFYSENYKYTENNGLGISIKG--GKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK   96 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~G--G~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~   96 (774)
                      ...+.|.+.+.. .+|||++.+  |.+...+++|..|.++|||+++| |++||+|++|||+++.++++.+++.+++..++
T Consensus         2 ~~~r~v~l~k~~-~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~   79 (96)
T 2v90_A            2 MKPRCLHLEKGP-QGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQGS   79 (96)
T ss_dssp             CCCEEEEEECBT-TBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred             CCCEEEEEEeCC-CcccEEEEeccCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            456788886654 599999998  44455689999999999999998 99999999999999999999999999999899


Q ss_pred             eEEEEeeecc
Q psy4897          97 VVELEVGVGY  106 (774)
Q Consensus        97 ~V~L~V~R~~  106 (774)
                      .|.|+|.|+.
T Consensus        80 ~v~l~v~r~~   89 (96)
T 2v90_A           80 CVSLTVVDPE   89 (96)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEEECCC
Confidence            9999998875

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.43  E-value=3.3e-13  Score=124.53  Aligned_cols=88  Identities=28%  Similarity=0.501  Sum_probs=78.4

Q ss_pred             CCCCcEEEEEEeecCCcccEEEEccCCC------CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHH
Q psy4897          17 SSRDFYSENYKYTENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA   90 (774)
Q Consensus        17 ~s~~~~~V~l~rk~~~gLGfsI~GG~e~------~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~l   90 (774)
                      ...+.++|++.+..+.+|||+|.+|.+.      ..+++|.+|.+++||+ +| |++||+|++|||++|.+++|.+++.+
T Consensus        11 ~~~~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~g-L~~GD~I~~Vng~~v~~~~~~~~~~~   88 (117)
T 2csj_A           11 VIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQ   88 (117)
T ss_dssp             EEEEEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHH
T ss_pred             ccceEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-cc-CCCCCEEEEECCEECCCcCHHHHHHH
Confidence            3446778888888789999999999764      4589999999999997 65 99999999999999999999999999


Q ss_pred             HHhcCceEEEEeeecc
Q psy4897          91 LKRAGKVVELEVGVGY  106 (774)
Q Consensus        91 Lk~ag~~V~L~V~R~~  106 (774)
                      ++.+++.|.|+|.|..
T Consensus        89 l~~~~~~v~l~v~R~~  104 (117)
T 2csj_A           89 LRKSGKIAAIVVKRPR  104 (117)
T ss_dssp             HHHSCSEEEEEEEEEE
T ss_pred             HhcCCCeEEEEEEECC
Confidence            9999999999998864

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.43  E-value=1.4e-12  Score=116.13  Aligned_cols=86  Identities=36%  Similarity=0.508  Sum_probs=76.6

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCC-CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENK-MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV   98 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~-~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V   98 (774)
                      ..++|++.+ ...+|||+|.++.+.. .+++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+++.+++.|
T Consensus         4 ~~~~v~l~~-~~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v   82 (98)
T 2opg_A            4 CETTIEISK-GRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRV   82 (98)
T ss_dssp             EEEEEEEEC-BTTBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred             CEEEEEEEE-CCCcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            346677755 5789999999987765 68999999999999999889999999999999999999999999999988999


Q ss_pred             EEEeeecc
Q psy4897          99 ELEVGVGY  106 (774)
Q Consensus        99 ~L~V~R~~  106 (774)
                      .|+|.|+.
T Consensus        83 ~l~v~R~~   90 (98)
T 2opg_A           83 RLTLYRDE   90 (98)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEcCC
Confidence            99998865

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.42  E-value=1.2e-12  Score=119.09  Aligned_cols=85  Identities=19%  Similarity=0.345  Sum_probs=76.6

Q ss_pred             cEEEEEEeecCCcccEEEEccCCCC------------CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHH
Q psy4897          21 FYSENYKYTENNGLGISIKGGKENK------------MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV   88 (774)
Q Consensus        21 ~~~V~l~rk~~~gLGfsI~GG~e~~------------~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV   88 (774)
                      .++|.+.++..++|||+|.++.+..            .|++|..|.++|||+++| |++||+|++|||++|.+++|.+++
T Consensus         8 ~~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~   86 (109)
T 1q3o_A            8 EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVV   86 (109)
T ss_dssp             EEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHH
T ss_pred             cEEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHH
Confidence            4578888889999999999887632            379999999999999998 999999999999999999999999


Q ss_pred             HHHHhcCceEEEEeeecc
Q psy4897          89 KALKRAGKVVELEVGVGY  106 (774)
Q Consensus        89 ~lLk~ag~~V~L~V~R~~  106 (774)
                      .+++.+++.+.|+|.|..
T Consensus        87 ~~l~~~~~~v~l~v~~~~  104 (109)
T 1q3o_A           87 NMIRQGGNTLMVKVVMVT  104 (109)
T ss_dssp             HHHHHTTTEEEEEEEEEE
T ss_pred             HHHHhCCCEEEEEEEECC
Confidence            999998999999998754

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=4.1e-13  Score=118.99  Aligned_cols=84  Identities=29%  Similarity=0.362  Sum_probs=75.0

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE   99 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~   99 (774)
                      ..++|++  +...+|||++.+|.+...+++|..|.|++||+++| |++||+|++|||+++.++++.+++.+++..++.+.
T Consensus         8 ~~~~v~l--~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~   84 (94)
T 2eeg_A            8 MPHSVTL--RGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLT   84 (94)
T ss_dssp             CCEEEEE--CCSSCCSCCEECCTTTTSCCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEE
T ss_pred             ceEEEEE--eCCCccCEEEECccCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            3445555  56689999999999887899999999999999998 99999999999999999999999999999899999


Q ss_pred             EEeeecc
Q psy4897         100 LEVGVGY  106 (774)
Q Consensus       100 L~V~R~~  106 (774)
                      |+|.|+.
T Consensus        85 l~v~R~g   91 (94)
T 2eeg_A           85 LSVSSGP   91 (94)
T ss_dssp             EEEECCS
T ss_pred             EEEEeCC
Confidence            9998764

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.42  E-value=7.7e-13  Score=124.88  Aligned_cols=88  Identities=28%  Similarity=0.305  Sum_probs=76.1

Q ss_pred             CcEEEEEEee---------cCCcccEEEEccCCCC---CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHH
Q psy4897          20 DFYSENYKYT---------ENNGLGISIKGGKENK---MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA   87 (774)
Q Consensus        20 ~~~~V~l~rk---------~~~gLGfsI~GG~e~~---~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~ea   87 (774)
                      .+..+++.+.         ...+|||+|.||.+..   .+++|..|.+++||+++|+|++||+|++|||++|.+++|.++
T Consensus        27 ~i~~v~l~~~~~~~~i~k~~~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~  106 (131)
T 1wfg_A           27 LIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEV  106 (131)
T ss_dssp             EEEEEEEECSCTTSCCCSCSCTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHH
T ss_pred             eeeEEEEeccceeEEEecCCCCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            3445555555         6889999999987653   489999999999999998899999999999999999999999


Q ss_pred             HHHHHhcC--ceEEEEeeeccc
Q psy4897          88 VKALKRAG--KVVELEVGVGYG  107 (774)
Q Consensus        88 V~lLk~ag--~~V~L~V~R~~~  107 (774)
                      +.+++.++  +.|.|+|.|+..
T Consensus       107 ~~~l~~~~~g~~v~l~v~R~g~  128 (131)
T 1wfg_A          107 YNIILESKPEPQVELVVSRSGP  128 (131)
T ss_dssp             HHHHHHTSSSSEEEEEEEEECS
T ss_pred             HHHHHhcCCCCEEEEEEEcCCC
Confidence            99999864  899999998753

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.42  E-value=1.1e-12  Score=116.24  Aligned_cols=81  Identities=27%  Similarity=0.350  Sum_probs=70.5

Q ss_pred             EEEEeecCCcccEEEEccCC--------CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcC
Q psy4897          24 ENYKYTENNGLGISIKGGKE--------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG   95 (774)
Q Consensus        24 V~l~rk~~~gLGfsI~GG~e--------~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag   95 (774)
                      +++....+.+|||+|.||.+        ...+++|..|.|+|||++ | |++||+|++|||+++.++++.+++.+++.++
T Consensus         5 ~~v~l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   82 (95)
T 1mfg_A            5 IRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ   82 (95)
T ss_dssp             EEEEEECSSSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCBHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEECCEEcCCCCHHHHHHHhhcCC
Confidence            34444445599999999874        346899999999999999 6 9999999999999999999999999999999


Q ss_pred             ceEEEEeeecc
Q psy4897          96 KVVELEVGVGY  106 (774)
Q Consensus        96 ~~V~L~V~R~~  106 (774)
                      +.+.|+|.|+.
T Consensus        83 ~~v~l~v~R~~   93 (95)
T 1mfg_A           83 NTVELIIVREV   93 (95)
T ss_dssp             SEEEEEEEEEC
T ss_pred             CeEEEEEEeCC
Confidence            99999998853

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.42  E-value=1.3e-12  Score=114.54  Aligned_cols=85  Identities=20%  Similarity=0.230  Sum_probs=75.0

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV   98 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V   98 (774)
                      ...+.|++.+. ..+|||++.++.+ ..|++|..|.++|||+++| |++||+|++|||+++.+++|.++..+++..++.|
T Consensus         3 ~~~r~v~l~k~-~~g~G~~~~~~~~-~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v   79 (90)
T 2he4_A            3 LRPRLCHLRKG-PQGYGFNLHSDKS-RPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEA   79 (90)
T ss_dssp             TCCEEEEEECB-TTBCCEEEEECSS-SSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEE
T ss_pred             CCcEEEEEEEC-CCCccEEEEccCC-CCCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcE
Confidence            34667787654 4699999998765 4689999999999999998 9999999999999999999999999999999999


Q ss_pred             EEEeeecc
Q psy4897          99 ELEVGVGY  106 (774)
Q Consensus        99 ~L~V~R~~  106 (774)
                      .|+|.|..
T Consensus        80 ~l~v~r~~   87 (90)
T 2he4_A           80 RLLVVGPS   87 (90)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEccC
Confidence            99998864

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.42  E-value=7.9e-13  Score=130.47  Aligned_cols=87  Identities=26%  Similarity=0.446  Sum_probs=76.2

Q ss_pred             CCCcEEEEEEeecCCcccEEEEc---cCCC---CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHH
Q psy4897          18 SRDFYSENYKYTENNGLGISIKG---GKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL   91 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~G---G~e~---~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lL   91 (774)
                      ..++++|++.+.. .+|||+|.+   |.+.   ..+++|..|.+||||+++|+|++||+|++|||++|.+++|.+++.+|
T Consensus        78 ~~~~~~v~l~k~~-~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l  156 (170)
T 3egg_C           78 RLELFPVELEKDS-EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVL  156 (170)
T ss_dssp             TSEEEEEEEECBT-TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHH
T ss_pred             CceEEEEEEEeCC-CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4566778886655 699999998   4332   25799999999999999999999999999999999999999999999


Q ss_pred             HhcCceEEEEeeec
Q psy4897          92 KRAGKVVELEVGVG  105 (774)
Q Consensus        92 k~ag~~V~L~V~R~  105 (774)
                      +.++..|+|+|.|+
T Consensus       157 ~~~g~~v~L~V~R~  170 (170)
T 3egg_C          157 RNTKGRVRFMIGRE  170 (170)
T ss_dssp             HHCCSEEEEEEEEC
T ss_pred             HcCCCEEEEEEEeC
Confidence            99999999999873

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.42  E-value=3.8e-13  Score=121.25  Aligned_cols=86  Identities=27%  Similarity=0.369  Sum_probs=78.1

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV   97 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~   97 (774)
                      +.+.++|++.  .+.+|||+|.+|.+...+++|..|.++|||+++| |++||+|++|||+++.++++.+++.+++.+++.
T Consensus         3 ~g~~~~v~l~--~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~   79 (103)
T 1wf7_A            3 SGSSGSVSLV--GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGS   79 (103)
T ss_dssp             CCCCEEEEEE--SSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCSSE
T ss_pred             CCCEEEEEEe--CCCccCEEEeccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4566777775  6789999999998877789999999999999998 999999999999999999999999999999999


Q ss_pred             EEEEeeecc
Q psy4897          98 VELEVGVGY  106 (774)
Q Consensus        98 V~L~V~R~~  106 (774)
                      +.|+|.|+.
T Consensus        80 v~l~v~R~g   88 (103)
T 1wf7_A           80 LNMTLQRAS   88 (103)
T ss_dssp             EEEEECCCS
T ss_pred             EEEEEEeCC
Confidence            999998865

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.42  E-value=4e-13  Score=122.27  Aligned_cols=84  Identities=21%  Similarity=0.306  Sum_probs=76.6

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE   99 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~   99 (774)
                      +.++|.+.++...+|||++.+   ...|++|.+|.+||||+++|+|++||+|++|||++|.++++.+++.+++.++..|.
T Consensus         2 ~~~~v~L~k~~~~glG~~i~~---~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~   78 (106)
T 2la8_A            2 EKFNVDLMKKAGKELGLSLSP---NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVS   78 (106)
T ss_dssp             EEEEEEECCBSSSTTCCEEEE---CSSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEE
T ss_pred             eEEEEEEEeCCCCccCEEEEe---CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Confidence            467889988999999999987   24689999999999999998899999999999999999999999999999988999


Q ss_pred             EEeeecc
Q psy4897         100 LEVGVGY  106 (774)
Q Consensus       100 L~V~R~~  106 (774)
                      |+|.|..
T Consensus        79 l~v~R~~   85 (106)
T 2la8_A           79 MEVTRPK   85 (106)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            9998864

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.42  E-value=9.2e-13  Score=119.31  Aligned_cols=86  Identities=28%  Similarity=0.464  Sum_probs=77.8

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCC------CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHH
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK   92 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~------~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk   92 (774)
                      .+.++|++.+.++.+|||+|.++.+.      ..+++|..|.++|||+ +| |++||+|++|||+++.++++.+++..++
T Consensus         6 ~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~   83 (107)
T 2h2b_A            6 WEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQ-LQENDRVAMVNGVSMDNVEHAFAVQQLR   83 (107)
T ss_dssp             EEEEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TT-BCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             ceeEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hC-CCCCCEEEEECCEECCCccHHHHHHHhh
Confidence            35788999888889999999998774      3589999999999999 76 9999999999999999999999999999


Q ss_pred             hcCceEEEEeeecc
Q psy4897          93 RAGKVVELEVGVGY  106 (774)
Q Consensus        93 ~ag~~V~L~V~R~~  106 (774)
                      ++++.+.|+|.|+.
T Consensus        84 ~~g~~v~l~v~R~~   97 (107)
T 2h2b_A           84 KSGKNAKITIRRKK   97 (107)
T ss_dssp             TCCSEEEEEEEEES
T ss_pred             CCCCEEEEEEEECC
Confidence            89999999998865

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.42  E-value=8.1e-13  Score=117.71  Aligned_cols=87  Identities=22%  Similarity=0.301  Sum_probs=77.9

Q ss_pred             CCCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCc
Q psy4897          17 SSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK   96 (774)
Q Consensus        17 ~s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~   96 (774)
                      +.-+.++|.+.++...+|||++.+   ...|++|.+|.++|||+++|+|++||+|++|||++|.++++.+++.+++.++.
T Consensus         5 ~~~~~~~v~l~~~~~~glG~~~~~---~~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~   81 (96)
T 2qkv_A            5 NSLEKFNVDLMKKAGKELGLSLSP---NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANG   81 (96)
T ss_dssp             CCCCCEEEEEECBTTBCCCEEEEE---CSSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSS
T ss_pred             HHCceEEEEEEeCCCCCccEEEEe---CCCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC
Confidence            344677888988889999999987   24689999999999999997799999999999999999999999999999989


Q ss_pred             eEEEEeeecc
Q psy4897          97 VVELEVGVGY  106 (774)
Q Consensus        97 ~V~L~V~R~~  106 (774)
                      .|.|+|.|..
T Consensus        82 ~v~l~v~R~~   91 (96)
T 2qkv_A           82 KVSMEVTRPK   91 (96)
T ss_dssp             EEEEEEECCC
T ss_pred             cEEEEEEeCC
Confidence            9999998864

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.42  E-value=5e-13  Score=120.86  Aligned_cols=89  Identities=37%  Similarity=0.487  Sum_probs=77.7

Q ss_pred             CCCCcEEEEEEeecCCcccEEEEccCCC------CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHH
Q psy4897          17 SSRDFYSENYKYTENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA   90 (774)
Q Consensus        17 ~s~~~~~V~l~rk~~~gLGfsI~GG~e~------~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~l   90 (774)
                      .+.+.++|++.+ ...+|||+|.+|.+.      ..+++|..|.++|||+++|.|++||+|++|||++|.++++.+++.+
T Consensus         4 ~~~~~~~v~l~~-~~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   82 (105)
T 1wha_A            4 GSSGRHVACLAR-SERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSL   82 (105)
T ss_dssp             CCCEEEEEEECC-CTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHH
T ss_pred             CCCeeEEEEEEe-CCCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            345566777754 566799999998763      3689999999999999998899999999999999999999999999


Q ss_pred             HHhcCceEEEEeeecc
Q psy4897          91 LKRAGKVVELEVGVGY  106 (774)
Q Consensus        91 Lk~ag~~V~L~V~R~~  106 (774)
                      ++.+++.|.|+|.|+.
T Consensus        83 l~~~g~~v~l~v~R~~   98 (105)
T 1wha_A           83 LTAASPTIALLLEREA   98 (105)
T ss_dssp             HTSCCSCEEEEEEECC
T ss_pred             HHcCCCeEEEEEEECC
Confidence            9998999999998864

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=3.2e-13  Score=121.26  Aligned_cols=89  Identities=26%  Similarity=0.377  Sum_probs=79.6

Q ss_pred             CCCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCc
Q psy4897          17 SSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK   96 (774)
Q Consensus        17 ~s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~   96 (774)
                      ...++.++.+.+++..+|||+|.+|.+...+++|..|.++|||+++|+|++||+|++|||+++.++ +.+++.+++.+++
T Consensus         6 ~~~~~~~~~v~~~~~~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~   84 (100)
T 2edp_A            6 SGGSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSFR   84 (100)
T ss_dssp             CCCCCEEEEEECCSCSCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCCS
T ss_pred             CCCCcEEEEEEECCCCCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCCC
Confidence            345667788888888899999999988777899999999999999955999999999999999997 8999999999889


Q ss_pred             eEEEEeeecc
Q psy4897          97 VVELEVGVGY  106 (774)
Q Consensus        97 ~V~L~V~R~~  106 (774)
                      .|.|+|.|+.
T Consensus        85 ~v~l~v~R~~   94 (100)
T 2edp_A           85 ILKLIVRRRN   94 (100)
T ss_dssp             SCEEEEEECC
T ss_pred             eEEEEEEeCC
Confidence            9999998875

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.42  E-value=1.2e-12  Score=122.06  Aligned_cols=87  Identities=29%  Similarity=0.429  Sum_probs=77.7

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCc
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGK   96 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~   96 (774)
                      .+.++|++.+ +..+|||+|.+|.+...+++|..|.+++||+++|.|++||+|++|||++|.++++.+++.+|+.  .++
T Consensus        18 ~~~~~v~l~~-~~~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~   96 (123)
T 1ueq_A           18 GTFLSTTLKK-SNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQ   96 (123)
T ss_dssp             SEEEEEEEEC-CTTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTC
T ss_pred             CcEEEEEEEe-CCCceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            3566777755 5779999999988877889999999999999998899999999999999999999999999998  578


Q ss_pred             eEEEEeeecc
Q psy4897          97 VVELEVGVGY  106 (774)
Q Consensus        97 ~V~L~V~R~~  106 (774)
                      .|.|+|.|+.
T Consensus        97 ~v~l~v~R~~  106 (123)
T 1ueq_A           97 SVNLVLCRGY  106 (123)
T ss_dssp             EEEEEEEESC
T ss_pred             eEEEEEEeCC
Confidence            9999998865

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.41  E-value=1.3e-12  Score=119.03  Aligned_cols=89  Identities=26%  Similarity=0.367  Sum_probs=79.1

Q ss_pred             CCCCcEEEEEEeecCCcccEEEEccCCC---CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          17 SSRDFYSENYKYTENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        17 ~s~~~~~V~l~rk~~~gLGfsI~GG~e~---~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      ...+.++|++.+. ..+|||+|.+|.+.   ..+++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++.
T Consensus         5 ~~~~~~~v~l~~~-~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   83 (110)
T 1um1_A            5 SSGYVFTVELERG-PSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRH   83 (110)
T ss_dssp             SCCCEEEEEEECC-TTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHT
T ss_pred             CCCcEEEEEEEEC-CCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            3457788888764 47999999998764   3589999999999999998899999999999999999999999999999


Q ss_pred             cCceEEEEeeecc
Q psy4897          94 AGKVVELEVGVGY  106 (774)
Q Consensus        94 ag~~V~L~V~R~~  106 (774)
                      .++.|.|+|.|+.
T Consensus        84 ~~~~v~l~v~R~~   96 (110)
T 1um1_A           84 GGKKMRFLVAKSD   96 (110)
T ss_dssp             CCSEEEEEEECCC
T ss_pred             CCCeEEEEEEeCC
Confidence            9999999998865

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.41  E-value=1.4e-12  Score=117.24  Aligned_cols=87  Identities=40%  Similarity=0.511  Sum_probs=77.2

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV   97 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~   97 (774)
                      ....++|++.+. +.+|||+|.++.+ ..+++|..|.|+|||+++|.|++||+|++|||++|.++++.+++.+++.+++.
T Consensus         9 ~~~~~~v~l~k~-~~glG~~~~~~~~-~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   86 (104)
T 3i4w_A            9 PREPRRIVIHRG-STGLGFNIVGGEX-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQT   86 (104)
T ss_dssp             CSSCEEEEEECB-TTBTSEEEEECC--CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSE
T ss_pred             CCccEEEEEEeC-CCccCEEEECCCC-CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            456778888665 6799999998865 45899999999999999988999999999999999999999999999999999


Q ss_pred             EEEEeeecc
Q psy4897          98 VELEVGVGY  106 (774)
Q Consensus        98 V~L~V~R~~  106 (774)
                      +.|+|.|+.
T Consensus        87 v~l~v~r~~   95 (104)
T 3i4w_A           87 VTIIAQYKP   95 (104)
T ss_dssp             EEEEEEECH
T ss_pred             EEEEEEECc
Confidence            999998864

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.41  E-value=1.1e-12  Score=122.41  Aligned_cols=88  Identities=25%  Similarity=0.348  Sum_probs=79.3

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCC-CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCc
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENK-MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK   96 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~-~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~   96 (774)
                      ..++++|.+.+. ..+|||+|.++.+.. .+++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++.++.
T Consensus        23 ~~~~~~v~l~k~-~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~  101 (124)
T 2daz_A           23 PGELHIIELEKD-KNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPS  101 (124)
T ss_dssp             SSEEEEEEEECC-SSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSCS
T ss_pred             CCceEEEEEEeC-CCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            456778888655 689999999987754 689999999999999998899999999999999999999999999999999


Q ss_pred             eEEEEeeecc
Q psy4897          97 VVELEVGVGY  106 (774)
Q Consensus        97 ~V~L~V~R~~  106 (774)
                      .|.|+|.|+.
T Consensus       102 ~v~l~v~R~~  111 (124)
T 2daz_A          102 KVKLVFIRNE  111 (124)
T ss_dssp             EEEEEEEECT
T ss_pred             eEEEEEEeCC
Confidence            9999998865

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.41  E-value=9.9e-13  Score=119.29  Aligned_cols=87  Identities=28%  Similarity=0.470  Sum_probs=76.1

Q ss_pred             CCcEEEEEEeecCCcccEEEEc---cCCC---CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHH
Q psy4897          19 RDFYSENYKYTENNGLGISIKG---GKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK   92 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~G---G~e~---~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk   92 (774)
                      .++++|.+.+ +..+|||+|.+   |.+.   ..+++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++
T Consensus         8 ~~~~~v~l~k-~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   86 (107)
T 1wf8_A            8 LELFPVELEK-DEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR   86 (107)
T ss_dssp             EEEEEEEEEC-BTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHH
T ss_pred             ceEEEEEEEE-CCCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            3566677754 56799999998   4443   358999999999999999889999999999999999999999999999


Q ss_pred             hcCceEEEEeeecc
Q psy4897          93 RAGKVVELEVGVGY  106 (774)
Q Consensus        93 ~ag~~V~L~V~R~~  106 (774)
                      .+++.|.|+|.|..
T Consensus        87 ~~~~~v~l~v~R~~  100 (107)
T 1wf8_A           87 NTKGNVRFVIGREK  100 (107)
T ss_dssp             HCCSEEEEEEEEEC
T ss_pred             cCCCeEEEEEEeCC
Confidence            99999999998865

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.41  E-value=2.8e-13  Score=127.20  Aligned_cols=85  Identities=29%  Similarity=0.459  Sum_probs=74.6

Q ss_pred             EEEEEEeecCCcccEEEEccCCC----CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc---
Q psy4897          22 YSENYKYTENNGLGISIKGGKEN----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA---   94 (774)
Q Consensus        22 ~~V~l~rk~~~gLGfsI~GG~e~----~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a---   94 (774)
                      ++|.+.+++..+|||+|.++.+.    ..+++|..|.++|||+++|+|++||+|++|||++|.+++|.+++.+|+.+   
T Consensus        27 ~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~  106 (127)
T 1wg6_A           27 LEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSM  106 (127)
T ss_dssp             EEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhcc
Confidence            33444457889999999988653    25899999999999999988999999999999999999999999999976   


Q ss_pred             ----CceEEEEeeecc
Q psy4897          95 ----GKVVELEVGVGY  106 (774)
Q Consensus        95 ----g~~V~L~V~R~~  106 (774)
                          +..|+|+|.|..
T Consensus       107 ~g~~~~~v~l~v~R~~  122 (127)
T 1wg6_A          107 EGNIRGMIQLVILRRS  122 (127)
T ss_dssp             HHHHTCEEEEEEEECS
T ss_pred             ccCCCCEEEEEEEeCC
Confidence                789999998865

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.41  E-value=1.7e-13  Score=125.11  Aligned_cols=87  Identities=33%  Similarity=0.432  Sum_probs=79.1

Q ss_pred             CcEEEEEEeecCCcccEEEEccCC---------CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHH
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKE---------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA   90 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e---------~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~l   90 (774)
                      .+++|.+.+..+.+|||+|.+|.+         ...+++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+
T Consensus         9 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~   88 (111)
T 1uju_A            9 GLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQL   88 (111)
T ss_dssp             SSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHH
T ss_pred             ccEEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            467789988888999999999874         24689999999999999998899999999999999999999999999


Q ss_pred             HHhcCceEEEEeeecc
Q psy4897          91 LKRAGKVVELEVGVGY  106 (774)
Q Consensus        91 Lk~ag~~V~L~V~R~~  106 (774)
                      ++.+++.|.|+|.|..
T Consensus        89 l~~~g~~v~l~v~r~~  104 (111)
T 1uju_A           89 LRSVGDTLTVLVCDGF  104 (111)
T ss_dssp             HSSCSSEEEECCCCCC
T ss_pred             HHcCCCeEEEEEEECC
Confidence            9999999999998764

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=1e-12  Score=118.38  Aligned_cols=89  Identities=25%  Similarity=0.468  Sum_probs=78.9

Q ss_pred             CCCCcEEEEEEeecCCcccEEEEccCCC--CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy4897          17 SSRDFYSENYKYTENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA   94 (774)
Q Consensus        17 ~s~~~~~V~l~rk~~~gLGfsI~GG~e~--~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a   94 (774)
                      .....++|++.+.. .+|||+|.++.+.  ..+++|..|.+++||+++|.|++||+|++|||++|.++++.+++.+++.+
T Consensus         8 ~~~~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   86 (104)
T 2djt_A            8 QASGHFSVELVRGY-AGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAG   86 (104)
T ss_dssp             SCCCCEEEEEECCS-SSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHT
T ss_pred             CCCceEEEEEEeCC-CCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            34577888887655 7999999998764  46899999999999999977999999999999999999999999999998


Q ss_pred             CceEEEEeeecc
Q psy4897          95 GKVVELEVGVGY  106 (774)
Q Consensus        95 g~~V~L~V~R~~  106 (774)
                      ++.|.|+|.|+.
T Consensus        87 g~~v~l~v~R~g   98 (104)
T 2djt_A           87 GPQLHLVIRRPL   98 (104)
T ss_dssp             CSEEEEEECCCC
T ss_pred             CCeEEEEEEECC
Confidence            999999998865

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.41  E-value=7.8e-13  Score=123.99  Aligned_cols=91  Identities=25%  Similarity=0.362  Sum_probs=81.6

Q ss_pred             cCCCCcEEEEEEeecCCcccEEEEccCCC-----CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHH
Q psy4897          16 FSSRDFYSENYKYTENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA   90 (774)
Q Consensus        16 ~~s~~~~~V~l~rk~~~gLGfsI~GG~e~-----~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~l   90 (774)
                      ....+.++|.+.+++..+|||+|.++.+.     ..+++|..|.++|||+++|.|++||+|++|||++|.++++.+++.+
T Consensus        11 ~~~~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   90 (129)
T 2dmz_A           11 SSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEV   90 (129)
T ss_dssp             SCCEEEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHH
T ss_pred             CCCCcEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            44567778888888899999999987653     4589999999999999998899999999999999999999999999


Q ss_pred             HHhcCceEEEEeeecc
Q psy4897          91 LKRAGKVVELEVGVGY  106 (774)
Q Consensus        91 Lk~ag~~V~L~V~R~~  106 (774)
                      ++.+++.|.|+|.|+.
T Consensus        91 l~~~~~~v~l~v~R~~  106 (129)
T 2dmz_A           91 LRNAGQVVHLTLVRRK  106 (129)
T ss_dssp             HHHCCSSEEEEEEEES
T ss_pred             HHcCCCeEEEEEEeCC
Confidence            9999999999998875

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.41  E-value=1.4e-12  Score=113.62  Aligned_cols=77  Identities=22%  Similarity=0.378  Sum_probs=71.2

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      .+|++++.|...++|||+++++       +|.+|.+++||+++| |++||+|++|||+++.+++|++++++|++++..|+
T Consensus         4 ~~r~v~l~k~~~g~~Gf~i~~g-------~I~~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V~   75 (82)
T 1r6j_A            4 DPRTITMHKDSTGHVGFIFKNG-------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVT   75 (82)
T ss_dssp             CCEEEEEECCTTSCCCEEEETT-------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEE
T ss_pred             ceEEEEEEECCCCCeEEEEECC-------EEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEE
Confidence            4789999998778899999875       489999999999998 99999999999999999999999999999999999


Q ss_pred             EEEEE
Q psy4897         254 LEVKY  258 (774)
Q Consensus       254 L~V~R  258 (774)
                      |+|.+
T Consensus        76 L~v~p   80 (82)
T 1r6j_A           76 ITIMP   80 (82)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99864

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.40  E-value=1e-12  Score=121.77  Aligned_cols=86  Identities=28%  Similarity=0.453  Sum_probs=73.2

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCC-CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc---
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENK-MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA---   94 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~-~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a---   94 (774)
                      .++..+.+.+.  ++|||+|.||.+.. .+++|.+|.+||||+++|+|++||+|++|||+++.+++|.+++.+++..   
T Consensus        17 ~~~~~~~~~~~--~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~   94 (118)
T 1v6b_A           17 KDVRLLRIKKE--GSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQ   94 (118)
T ss_dssp             CCEEEEEEESC--SCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHH
T ss_pred             ceEEEEEECCC--CccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhc
Confidence            34555555443  59999999998765 4599999999999999966999999999999999999999999999875   


Q ss_pred             -CceEEEEeeecc
Q psy4897          95 -GKVVELEVGVGY  106 (774)
Q Consensus        95 -g~~V~L~V~R~~  106 (774)
                       ++.|+|+|.|..
T Consensus        95 ~g~~v~l~v~r~~  107 (118)
T 1v6b_A           95 GGDWIDLVVAVCP  107 (118)
T ss_dssp             TCSEEEEEEECCC
T ss_pred             CCCeEEEEEEeCC
Confidence             789999998854

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.40  E-value=2.4e-12  Score=117.17  Aligned_cols=87  Identities=37%  Similarity=0.497  Sum_probs=76.3

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCC------CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHH
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKE------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL   91 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e------~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lL   91 (774)
                      ..+.+++.+.+. ..+|||+|.+|.+      ...+++|..|.++|||+++| |++||+|++|||++|.++++.+++..+
T Consensus        13 ~~~~~~~~l~~~-~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~   90 (110)
T 1x5q_A           13 EEEELTLTILRQ-TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEAL   90 (110)
T ss_dssp             CCEEEEEEEECS-SSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CcceEEEEEecC-CCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHh
Confidence            334556666554 8999999999875      34789999999999999998 999999999999999999999999999


Q ss_pred             HhcCceEEEEeeecc
Q psy4897          92 KRAGKVVELEVGVGY  106 (774)
Q Consensus        92 k~ag~~V~L~V~R~~  106 (774)
                      +.+++.|.|+|.|+.
T Consensus        91 ~~~g~~v~l~v~R~g  105 (110)
T 1x5q_A           91 RGAGTAVQMRVWRES  105 (110)
T ss_dssp             HSCCSEEEEEEEECS
T ss_pred             hCCCCeEEEEEEECC
Confidence            989999999999875

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.40  E-value=1.7e-12  Score=116.67  Aligned_cols=90  Identities=18%  Similarity=0.261  Sum_probs=77.6

Q ss_pred             cCCCCcEEEEEEeecCCcccEEEEccCC--CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          16 FSSRDFYSENYKYTENNGLGISIKGGKE--NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        16 ~~s~~~~~V~l~rk~~~gLGfsI~GG~e--~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      .+..++++|.+.+..+.+|||+|.+...  ...+++|.+|.+++||+++|+|++||+|++|||++|.+.++.+++.+|+.
T Consensus         5 ~~~~~~~~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~   84 (101)
T 2yt7_A            5 SSGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRE   84 (101)
T ss_dssp             STTCCCEEEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHH
T ss_pred             CCCCceEEEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            3456789999988888999999985221  12369999999999999977799999999999999999999999999998


Q ss_pred             --cCceEEEEeeec
Q psy4897          94 --AGKVVELEVGVG  105 (774)
Q Consensus        94 --ag~~V~L~V~R~  105 (774)
                        .++.|+|+|.|.
T Consensus        85 ~~~g~~v~l~v~R~   98 (101)
T 2yt7_A           85 TKSQTSVTLSIVHC   98 (101)
T ss_dssp             TTTSSEEEEEECCC
T ss_pred             CCCCCeEEEEEEeC
Confidence              788999999875

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.40  E-value=1.4e-12  Score=117.03  Aligned_cols=82  Identities=23%  Similarity=0.378  Sum_probs=74.6

Q ss_pred             cEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEE
Q psy4897          21 FYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVEL  100 (774)
Q Consensus        21 ~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L  100 (774)
                      ++.|.+.|+.+++|||+|....+  .+++|.+|.|+|||+++|.|++||+|++|||++|.++++.+++.+++..+..|+|
T Consensus        13 ~~~v~l~K~~~~~lG~~l~~~~~--~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~L   90 (97)
T 2ejy_A           13 VRLIQFEKVTEEPMGICLKLNEK--QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISL   90 (97)
T ss_dssp             CEEEEEEECSSSCCSEEEEECTT--CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEEEE
T ss_pred             cEEEEEEeCCCCCeeEEEEeCCC--CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            56789999999999999986432  5899999999999999988999999999999999999999999999998889999


Q ss_pred             Eeee
Q psy4897         101 EVGV  104 (774)
Q Consensus       101 ~V~R  104 (774)
                      +|.+
T Consensus        91 ~V~~   94 (97)
T 2ejy_A           91 KVIP   94 (97)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            8865

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.40  E-value=3.4e-13  Score=119.48  Aligned_cols=86  Identities=21%  Similarity=0.379  Sum_probs=78.5

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE   99 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~   99 (774)
                      ...++.+.++++.+|||+|.+|.+...+++|..|.++|||+++| |++||+|++|||+++.++++.+++.+++..++.+.
T Consensus         4 g~~~~~~~~~~~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~   82 (94)
T 1vb7_A            4 GSSGLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLR   82 (94)
T ss_dssp             CCCCEEEEECSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEE
T ss_pred             ccEEEEEEecCCCCccEEEecccCCCCCeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEE
Confidence            34567788889999999999998877799999999999999998 99999999999999999999999999998888999


Q ss_pred             EEeeecc
Q psy4897         100 LEVGVGY  106 (774)
Q Consensus       100 L~V~R~~  106 (774)
                      |+|.|+.
T Consensus        83 l~v~R~g   89 (94)
T 1vb7_A           83 LQLDRSS   89 (94)
T ss_dssp             EEEECCC
T ss_pred             EEEEECC
Confidence            9998875

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.40  E-value=1.2e-12  Score=123.13  Aligned_cols=87  Identities=28%  Similarity=0.437  Sum_probs=77.7

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc--Cc
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GK   96 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a--g~   96 (774)
                      ...++|++.+ +..+|||+|.+|.+...+++|..|.++|||+++|+|++||+|++|||++|.+++|.+++.+++.+  ++
T Consensus        17 g~~~~v~l~~-~~~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~   95 (129)
T 2kpk_A           17 GKFIHTKLRK-SSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGA   95 (129)
T ss_dssp             SEEEEEEEEE-CSSCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTE
T ss_pred             CcEEEEEEEE-CCCcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            4556777765 66799999999877667899999999999999988999999999999999999999999999987  78


Q ss_pred             eEEEEeeecc
Q psy4897          97 VVELEVGVGY  106 (774)
Q Consensus        97 ~V~L~V~R~~  106 (774)
                      .|.|+|.|..
T Consensus        96 ~v~l~v~R~~  105 (129)
T 2kpk_A           96 SVDLELCRGY  105 (129)
T ss_dssp             EEEEEEEECS
T ss_pred             eEEEEEEeCC
Confidence            8999998864

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.39  E-value=1.5e-12  Score=119.59  Aligned_cols=88  Identities=33%  Similarity=0.443  Sum_probs=78.7

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCC-------CCeEEEEecCCCHHhh-hCCCCCCCEEEEECCEecCCCCHHHHHH
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENK-------MPILISKIFKGMAADQ-TEQLYVGDAILSVNGEDLREATHDEAVK   89 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~-------~gi~Vs~V~pGSpAar-aG~LqvGD~ILsVNG~~V~~~sh~eaV~   89 (774)
                      ....++|.+.++++.+|||+|.++.+..       .+++|..|.++|||++ +| |++||+|++|||++|.++++.+++.
T Consensus         8 ~~~~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~ag-L~~GD~I~~ing~~v~~~~~~~~~~   86 (114)
T 1uew_A            8 SLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK-LKVGDRILAVNGQSIINMPHADIVK   86 (114)
T ss_dssp             CCCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSS-CCTTCBEEEETTBCTTTSCHHHHHH
T ss_pred             cccceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCC-CCCCCEEEEECCEECCCCCHHHHHH
Confidence            4567889999999999999999875432       2679999999999999 76 9999999999999999999999999


Q ss_pred             HHHhcCceEEEEeeecc
Q psy4897          90 ALKRAGKVVELEVGVGY  106 (774)
Q Consensus        90 lLk~ag~~V~L~V~R~~  106 (774)
                      +++..++.|.|+|.|..
T Consensus        87 ~l~~~g~~v~l~v~r~~  103 (114)
T 1uew_A           87 LIKDAGLSVTLRIIPQE  103 (114)
T ss_dssp             HHHHTTTEEEEEECCCS
T ss_pred             HHHcCCCeEEEEEEeCC
Confidence            99999999999998865

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.39  E-value=7e-13  Score=124.50  Aligned_cols=92  Identities=21%  Similarity=0.227  Sum_probs=81.1

Q ss_pred             ccCCCCcEEEEEEeec-CCcccEEEEccCCC---------CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCH
Q psy4897          15 FFSSRDFYSENYKYTE-NNGLGISIKGGKEN---------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH   84 (774)
Q Consensus        15 ~~~s~~~~~V~l~rk~-~~gLGfsI~GG~e~---------~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh   84 (774)
                      ......++.|.+.+.+ +++|||+|.++.+.         ..|++|..|.++|||+++|.|++||+|++|||++|.++++
T Consensus        24 ~~~~~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~  103 (128)
T 1nf3_C           24 DILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSL  103 (128)
T ss_dssp             TTSCTTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCH
T ss_pred             ccCCCccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            3456778889998876 68999999988642         2479999999999999998799999999999999999999


Q ss_pred             HHHHHHHHhcCceEEEEeeecc
Q psy4897          85 DEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        85 ~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      .+++.+++.++..|.|+|.|..
T Consensus       104 ~~~~~~l~~~~~~v~l~v~r~~  125 (128)
T 1nf3_C          104 DQVTDMMIANSRNLIITVRPAN  125 (128)
T ss_dssp             HHHHHHHHHTTTSEEEEEECCC
T ss_pred             HHHHHHHHcCCCeEEEEEEECC
Confidence            9999999999999999998865

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=99.39  E-value=2.8e-13  Score=142.44  Aligned_cols=87  Identities=68%  Similarity=0.918  Sum_probs=81.3

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE   99 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~   99 (774)
                      .+++|+|.|.++++|||+|.||.+...+++|.+|.+||||+++++|++||+|++|||++|.+++|.+++.+++.+++.|+
T Consensus        77 ~~r~V~L~k~~~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V~  156 (263)
T 1z87_A           77 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV  156 (263)
T ss_dssp             SSEEECCCTTTTCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCCC
T ss_pred             ccEEEEEEeCCCCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEE
Confidence            57899998888899999999999888899999999999999954599999999999999999999999999999999999


Q ss_pred             EEeeecc
Q psy4897         100 LEVGVGY  106 (774)
Q Consensus       100 L~V~R~~  106 (774)
                      |+|.|..
T Consensus       157 L~V~R~~  163 (263)
T 1z87_A          157 LEVKYMK  163 (263)
T ss_dssp             EEEECCS
T ss_pred             EEEEeCc
Confidence            9998864

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=99.39  E-value=3.5e-14  Score=160.25  Aligned_cols=154  Identities=18%  Similarity=0.255  Sum_probs=50.6

Q ss_pred             CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHH--hcCceEEEEeeecccccceeeeeeccceeee
Q psy4897          46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK--RAGKVVELEVGVGYGRCGTLETYVRGQWYKV  123 (774)
Q Consensus        46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk--~ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~  123 (774)
                      .|++|.+|.++|||+++| |++||+|++|||++|.++.  +...++.  +.++.|.|+|.|++.. ..+.          
T Consensus       286 ~G~~V~~V~~gspA~~AG-L~~GDvI~~inG~~v~~~~--~l~~~l~~~~~g~~v~l~v~R~g~~-~~~~----------  351 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFA--ALRAQVGTMPVGSKLTLGLLRDGKQ-VNVN----------  351 (448)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSSH--HHHHHTTSSBTTCCCEEEEESSSCE-EECC----------
T ss_pred             CceEEEEeccCCHHHHcC-CCCCCEEEEECCEEcCCHH--HHHHHHHhcCCCCEEEEEEEECCEE-EEEE----------
Confidence            589999999999999997 9999999999999999884  4444554  4688999999886521 0000          


Q ss_pred             eeecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEEEEeccCCCCcceEEeCCCCCCCCeE
Q psy4897         124 FVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPIL  203 (774)
Q Consensus       124 ~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~  203 (774)
                       .++         ......          .                 ....       .....-+|+.+..- ....+++
T Consensus       352 -v~~---------~~~~~~----------~-----------------~~~~-------~~~~~~~G~~l~~~-~~~~gv~  386 (448)
T 1ky9_A          352 -LEL---------QQSSQN----------Q-----------------VDSS-------SIFNGIEGAEMSNK-GKDQGVV  386 (448)
T ss_dssp             -CC-----------------------------------------------------------------------------
T ss_pred             -EEE---------ecCCCc----------c-----------------cccc-------cccccccceEeecc-CCCCeEE
Confidence             000         000000          0                 0000       00011235544321 1235789


Q ss_pred             EEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecc
Q psy4897         204 ISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE  261 (774)
Q Consensus       204 Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~  261 (774)
                      |..|.+++||+++| |++||+|++|||+++.+  ++++.++|+..++.+.|+|.|.+.
T Consensus       387 V~~V~~gspA~~aG-L~~GDiI~~vng~~v~~--~~~l~~~l~~~~~~v~l~v~R~g~  441 (448)
T 1ky9_A          387 VNNVKTGTPAAQIG-LKKGDVIIGANQQAVKN--IAELRKVLDSKPSVLALNIQRGDS  441 (448)
T ss_dssp             ----------------------------------------------------------
T ss_pred             EEEecCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHcCCCeEEEEEEECCE
Confidence            99999999999998 99999999999999986  789999998866688899988654

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.39  E-value=1.5e-12  Score=118.28  Aligned_cols=89  Identities=33%  Similarity=0.524  Sum_probs=79.3

Q ss_pred             CCCCcEEEEEEeecCCcccEEEE-----ccCCC---CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHH
Q psy4897          17 SSRDFYSENYKYTENNGLGISIK-----GGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV   88 (774)
Q Consensus        17 ~s~~~~~V~l~rk~~~gLGfsI~-----GG~e~---~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV   88 (774)
                      ...+.++|++.+ .+.+|||+|.     ||.+.   ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++
T Consensus         6 ~~~~~~~v~l~k-~~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~   84 (108)
T 1q7x_A            6 KPGDIFEVELAK-NDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAV   84 (108)
T ss_dssp             CSSSEEEEEEES-SSCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHH
T ss_pred             CCCcEEEEEEEE-CCCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            345788888865 4689999999     88764   36899999999999999988999999999999999999999999


Q ss_pred             HHHHhcCceEEEEeeecc
Q psy4897          89 KALKRAGKVVELEVGVGY  106 (774)
Q Consensus        89 ~lLk~ag~~V~L~V~R~~  106 (774)
                      .+++.+++.|.|+|.|+.
T Consensus        85 ~~~~~~g~~v~l~v~R~~  102 (108)
T 1q7x_A           85 ETLRNTGQVVHLLLEKGQ  102 (108)
T ss_dssp             HHHHHTTSEEEEEEECCC
T ss_pred             HHHHcCCCeEEEEEEeCC
Confidence            999999999999998865

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=1.6e-12  Score=116.41  Aligned_cols=87  Identities=32%  Similarity=0.412  Sum_probs=78.5

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV   97 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~   97 (774)
                      ...+++|++.+.+.+.|||++.++.+...+++|..|.++|||+++| |++||+|++|||++|.++++.+++..++. ++.
T Consensus         8 ~~~~~~v~l~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~   85 (100)
T 2eeh_A            8 SDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTS-SSR   85 (100)
T ss_dssp             CCEECCEEECCCSSSSCSEEEECCTTTTCCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSCCHHHHHHHHHS-CSS
T ss_pred             CCeEEEEEEEECCCCCccEEEEccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC-CCE
Confidence            4567788998888889999999887666799999999999999998 99999999999999999999999888887 789


Q ss_pred             EEEEeeecc
Q psy4897          98 VELEVGVGY  106 (774)
Q Consensus        98 V~L~V~R~~  106 (774)
                      |.|+|.|+.
T Consensus        86 v~l~v~R~g   94 (100)
T 2eeh_A           86 LHMMVRRMG   94 (100)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEECC
Confidence            999999875

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.38  E-value=3.9e-12  Score=111.67  Aligned_cols=83  Identities=28%  Similarity=0.348  Sum_probs=71.0

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE   99 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~   99 (774)
                      ..++|++.+.+ .+|||+|.++.+ ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++.+++.++..+.
T Consensus         3 ~~r~v~l~r~~-~g~G~~~~~~~~-~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~   79 (91)
T 1g9o_A            3 LPRLCCLEKGP-NGYGFHLHGEKG-KLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVR   79 (91)
T ss_dssp             CCEEEEEECBT-TBCCEEEEECTT-CSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEE
T ss_pred             ccEEEEEEeCC-CcccEEEEecCC-CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEE
Confidence            35677876654 699999998764 3689999999999999998 99999999999999999999999999998877766


Q ss_pred             EEeeec
Q psy4897         100 LEVGVG  105 (774)
Q Consensus       100 L~V~R~  105 (774)
                      +.+.++
T Consensus        80 ~~~~~r   85 (91)
T 1g9o_A           80 LLVVDP   85 (91)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            666554

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.37  E-value=3.6e-12  Score=117.40  Aligned_cols=91  Identities=24%  Similarity=0.323  Sum_probs=78.5

Q ss_pred             cccCCCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          14 FFFSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        14 ~~~~s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      ...+.....+|++.+...++|||+|.++.+...+++|..|.++|||+++|.|++||+|++|||+++.+.++.+++.+++.
T Consensus        18 ~~~q~~~~~~V~l~~~~~~~lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~   97 (114)
T 2gzv_A           18 LYFQSMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQE   97 (114)
T ss_dssp             ----CCCCEEEEEECCTTSCCSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             eeeccCCCEEEEEEECCCCcEeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            34667788999999998889999999987766789999999999999998899999999999999999999999999998


Q ss_pred             cCceEEEEeee
Q psy4897          94 AGKVVELEVGV  104 (774)
Q Consensus        94 ag~~V~L~V~R  104 (774)
                      .+..|.|+|.+
T Consensus        98 ~~~~v~l~v~~  108 (114)
T 2gzv_A           98 VKGEVTIHYNK  108 (114)
T ss_dssp             CCSEEEEEEEC
T ss_pred             CCCeEEEEEEe
Confidence            88888888854

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.37  E-value=2.7e-12  Score=115.25  Aligned_cols=89  Identities=33%  Similarity=0.445  Sum_probs=76.3

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCC---------CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHH
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKEN---------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV   88 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~---------~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV   88 (774)
                      +-+.++|.+.+.+...|||++.++.+.         ..+++|..|.++|||+++|.|++||+|++|||++|.++++.+++
T Consensus         2 ~ldp~~v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~   81 (103)
T 2fcf_A            2 SMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAV   81 (103)
T ss_dssp             CCSCEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CCCCEEEEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            346789999888889999999986542         25899999999999999977999999999999999999999999


Q ss_pred             HHHHhcCceEEEEeeecc
Q psy4897          89 KALKRAGKVVELEVGVGY  106 (774)
Q Consensus        89 ~lLk~ag~~V~L~V~R~~  106 (774)
                      .+++..+..+.|+|.|..
T Consensus        82 ~~l~~~~~~v~l~v~r~~   99 (103)
T 2fcf_A           82 EAIRKAGNPVVFMVQSII   99 (103)
T ss_dssp             HHHHTCCSSEEEEEECCC
T ss_pred             HHHHhCCCcEEEEEEECC
Confidence            999998889999998754

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.36  E-value=1.1e-12  Score=120.15  Aligned_cols=86  Identities=27%  Similarity=0.466  Sum_probs=75.7

Q ss_pred             CcEEEEEEeecCCcccEEEEc---cCCC---CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          20 DFYSENYKYTENNGLGISIKG---GKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~G---G~e~---~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      ++++|.+.+ +..+|||+|.+   |.+.   ..|++|..|.|+|||+++|+|++||+|++|||+++.++++.+++.+++.
T Consensus         4 ~~~~v~l~k-~~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   82 (113)
T 2g5m_B            4 ELFPVELEK-DSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN   82 (113)
T ss_dssp             EEEEEECCC-CSSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHH
T ss_pred             EEEEEEEEe-CCCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            456677754 56899999998   5442   3689999999999999998899999999999999999999999999999


Q ss_pred             cCceEEEEeeecc
Q psy4897          94 AGKVVELEVGVGY  106 (774)
Q Consensus        94 ag~~V~L~V~R~~  106 (774)
                      +++.|.|+|.|+.
T Consensus        83 ~g~~v~l~v~R~~   95 (113)
T 2g5m_B           83 TKGRVRFMIGRER   95 (113)
T ss_dssp             SCSSCEEEEEECC
T ss_pred             CCCeEEEEEEeCC
Confidence            9999999999875

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.36  E-value=4e-12  Score=116.67  Aligned_cols=85  Identities=21%  Similarity=0.308  Sum_probs=77.6

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCC-CCCCEEEEECCEecCCCCHHHHHHHHHhcCc
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQL-YVGDAILSVNGEDLREATHDEAVKALKRAGK   96 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~L-qvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~   96 (774)
                      ..+++.|.+.+....+|||.|.++   ..+++|..|.+++||+++| | ++||+|++|||++|.++++.+++.+++..+.
T Consensus        23 ~~~~~~v~l~k~~~~~lG~~i~~~---~~gv~V~~V~~~spA~~aG-ll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~   98 (113)
T 1va8_A           23 GETVKIVRIEKARDIPLGATVRNE---MDSVIISRIVKGGAAEKSG-LLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHG   98 (113)
T ss_dssp             TEECEEEEEEECTTCCCCEEEEEC---SSSEEEEEECTTSHHHHHT-CCCTTCEEEEETTEECTTCCHHHHHHHHHHCCE
T ss_pred             CCceEEEEEEeCCCCceeEEEEeC---CCCEEEEEeCCCCHHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            457888999998888999999876   4689999999999999998 6 9999999999999999999999999999888


Q ss_pred             eEEEEeeecc
Q psy4897          97 VVELEVGVGY  106 (774)
Q Consensus        97 ~V~L~V~R~~  106 (774)
                      .|.|+|.|..
T Consensus        99 ~v~l~v~r~~  108 (113)
T 1va8_A           99 TLTFVLIPSS  108 (113)
T ss_dssp             EEEEEEECCC
T ss_pred             eEEEEEEECC
Confidence            9999998765

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1.2e-12  Score=115.73  Aligned_cols=84  Identities=24%  Similarity=0.290  Sum_probs=75.4

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV   97 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~   97 (774)
                      ...++.|.+.|+++.+|||+|.+.   ..+++|.+|.++|||+++|+|++||+|++|||++| +.++.+++.+++..++.
T Consensus         4 ~~~~r~v~l~k~~~~~lG~~i~~~---~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~   79 (91)
T 2e7k_A            4 GSSGRMVGIRKTAGEHLGVTFRVE---GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGS   79 (91)
T ss_dssp             CCCSCBCCBCCCTTCCCCEEEEES---SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSS
T ss_pred             CCCcEEEEEEECCCCcEeEEEEec---CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCe
Confidence            345677888888999999999872   46899999999999999988999999999999999 89999999999998889


Q ss_pred             EEEEeeec
Q psy4897          98 VELEVGVG  105 (774)
Q Consensus        98 V~L~V~R~  105 (774)
                      |.|+|.|.
T Consensus        80 v~l~v~~~   87 (91)
T 2e7k_A           80 VILKILSG   87 (91)
T ss_dssp             BCEEEECC
T ss_pred             EEEEEEEC
Confidence            99999764

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.36  E-value=1.9e-12  Score=116.58  Aligned_cols=83  Identities=27%  Similarity=0.315  Sum_probs=72.3

Q ss_pred             CcEEEEEEeecCCcccEEEEccCC--------CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHH
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKE--------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL   91 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e--------~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lL   91 (774)
                      ..++|++.+  +.+|||+|.||.+        ...+++|..|.++|||++ | |++||+|++|||+++.++++.+++.++
T Consensus        11 ~~~~v~l~~--~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~   86 (103)
T 1n7t_A           11 QEIRVRVEK--DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLL   86 (103)
T ss_dssp             CCEEEEEEC--SSCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             EEEEEEEcc--CCCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEECCEECCCCCHHHHHHHh
Confidence            345566655  4499999999875        346899999999999999 6 999999999999999999999999999


Q ss_pred             HhcCceEEEEeeecc
Q psy4897          92 KRAGKVVELEVGVGY  106 (774)
Q Consensus        92 k~ag~~V~L~V~R~~  106 (774)
                      +.+++.+.|+|.|+.
T Consensus        87 ~~~g~~v~l~v~R~~  101 (103)
T 1n7t_A           87 KTFQNTVELIIVREV  101 (103)
T ss_dssp             HHCCSEEEEEEECCC
T ss_pred             hcCCCeEEEEEEecC
Confidence            999999999998753

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.36  E-value=2.8e-12  Score=112.43  Aligned_cols=86  Identities=76%  Similarity=1.112  Sum_probs=78.2

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      .++++.+.+....+|||.+.++.+...+++|..|.+++||+++|+|++||+|++|||+++.++++.+++.+++..++.+.
T Consensus         4 ~~~~v~l~k~~~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~v~   83 (90)
T 1qav_A            4 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV   83 (90)
T ss_dssp             SCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred             ccEEEEEEeCCCCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            47889999987889999999876666789999999999999994499999999999999999999999999999889999


Q ss_pred             EEEEEe
Q psy4897         254 LEVKYL  259 (774)
Q Consensus       254 L~V~R~  259 (774)
                      |+|.|.
T Consensus        84 l~v~r~   89 (90)
T 1qav_A           84 LEVKYM   89 (90)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999875

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.36  E-value=3e-12  Score=117.51  Aligned_cols=90  Identities=24%  Similarity=0.296  Sum_probs=81.3

Q ss_pred             ccCCCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy4897          15 FFSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA   94 (774)
Q Consensus        15 ~~~s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a   94 (774)
                      ...+-+.+++.+.++...+|||+|.++.+ ..|++|..|.++|||+++| |++||+|++|||++|.++++.+++.+++..
T Consensus         8 ~~~~ldp~~~~l~~~~~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~   85 (114)
T 2edz_A            8 MASTFNPRECKLSKQEGQNYGFFLRIEKD-TDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKS   85 (114)
T ss_dssp             CCCCCCCEEEEEECCTTCCCSCEEECCTT-CCSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSSCHHHHHHHHHHT
T ss_pred             HhhcCCCEEEEEeCCCCCcccEEEEEecC-CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            34555899999999999999999987543 3689999999999999998 999999999999999999999999999999


Q ss_pred             CceEEEEeeecc
Q psy4897          95 GKVVELEVGVGY  106 (774)
Q Consensus        95 g~~V~L~V~R~~  106 (774)
                      ++.|.|+|.|+.
T Consensus        86 g~~v~l~v~R~~   97 (114)
T 2edz_A           86 GNSVTLLVLDGD   97 (114)
T ss_dssp             CSEEEEEEECHH
T ss_pred             CCEEEEEEEECC
Confidence            999999998865

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.35  E-value=4.9e-12  Score=111.31  Aligned_cols=82  Identities=16%  Similarity=0.173  Sum_probs=72.3

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV   98 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V   98 (774)
                      ..+++|++.+ +..+|||.+.+.    .+++|..|.++|||+++| |++||+|++|||+++.++++.+++.+++..+..+
T Consensus         2 ~~~r~v~l~~-~~~g~G~~l~~~----~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v   75 (91)
T 2f5y_A            2 MRYRQITIPR-GKDGFGFTICCD----SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEI   75 (91)
T ss_dssp             CEEEEEEEEC-BTTBTSEEEECS----SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEE
T ss_pred             CceEEEEEEe-CCCCccEEEecC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            3467788865 557899999864    469999999999999998 9999999999999999999999999999988899


Q ss_pred             EEEeeecc
Q psy4897          99 ELEVGVGY  106 (774)
Q Consensus        99 ~L~V~R~~  106 (774)
                      .|+|.|..
T Consensus        76 ~l~v~R~~   83 (91)
T 2f5y_A           76 ILLVWRMV   83 (91)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEeCC
Confidence            99998865

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.35  E-value=3.4e-12  Score=115.32  Aligned_cols=84  Identities=25%  Similarity=0.321  Sum_probs=76.7

Q ss_pred             cEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEE
Q psy4897          21 FYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVEL  100 (774)
Q Consensus        21 ~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L  100 (774)
                      ++.|.+.+.++.+|||.+.++.+ ..+++|..|.+||||+++| |++||+|++|||+++.+++|.+++.+++.+++.|.|
T Consensus         2 ~r~v~l~~~~~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l   79 (106)
T 3ngh_A            2 PRESKLSKQEGQNYGFFLRIEKD-TDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTL   79 (106)
T ss_dssp             CEEEEEECCTTCCCCCEEECCTT-CCSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEE
T ss_pred             CEEEEEEeCCCCeeCEEEEEEeC-CCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEE
Confidence            46788989888999999997754 4589999999999999998 999999999999999999999999999999999999


Q ss_pred             Eeeecc
Q psy4897         101 EVGVGY  106 (774)
Q Consensus       101 ~V~R~~  106 (774)
                      +|.|..
T Consensus        80 ~v~r~~   85 (106)
T 3ngh_A           80 LVLDGD   85 (106)
T ss_dssp             EEECHH
T ss_pred             EEEECC
Confidence            998865

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.35  E-value=9.4e-13  Score=118.20  Aligned_cols=87  Identities=31%  Similarity=0.576  Sum_probs=76.9

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV   98 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V   98 (774)
                      -..+++.+.+ ...+|||+|.++.+...+++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+++.+++.|
T Consensus        10 ~~~~~v~l~~-~~~g~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v   88 (103)
T 1wfv_A           10 FDYFTVDMEK-GAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRV   88 (103)
T ss_dssp             SCCEECCEEC-CTTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEE
T ss_pred             ceEEEEEEec-CCCcCCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            3556666654 447799999998877779999999999999999779999999999999999999999999999889999


Q ss_pred             EEEeeecc
Q psy4897          99 ELEVGVGY  106 (774)
Q Consensus        99 ~L~V~R~~  106 (774)
                      .|+|.|+.
T Consensus        89 ~l~v~R~~   96 (103)
T 1wfv_A           89 RLLLKRGT   96 (103)
T ss_dssp             CEEEECTT
T ss_pred             EEEEEECC
Confidence            99998865

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.35  E-value=4.7e-12  Score=111.12  Aligned_cols=79  Identities=19%  Similarity=0.243  Sum_probs=69.9

Q ss_pred             EEEEEEe-ecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEE
Q psy4897          22 YSENYKY-TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVEL  100 (774)
Q Consensus        22 ~~V~l~r-k~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L  100 (774)
                      ..|++.+ +.+.+|||.+.+      +++|.+|.+||||+++|+|++||+|++|||+++.++++.+++.+++.++..|+|
T Consensus         2 l~v~l~~~~~~~~~G~~~~~------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L   75 (88)
T 3e17_A            2 IGVLLMKSRANEEYGLRLGS------QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQL   75 (88)
T ss_dssp             EEEEEECBTTBCCCCEEEEE------EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEE
T ss_pred             eEEEEEeCCCCCCCCEEEeC------CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            4566665 455799999975      699999999999999988999999999999999999999999999999999999


Q ss_pred             Eeeecc
Q psy4897         101 EVGVGY  106 (774)
Q Consensus       101 ~V~R~~  106 (774)
                      +|.+..
T Consensus        76 ~v~~~~   81 (88)
T 3e17_A           76 VVLRDL   81 (88)
T ss_dssp             EECCC-
T ss_pred             EEeCCC
Confidence            997643

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.35  E-value=5.6e-12  Score=114.98  Aligned_cols=86  Identities=26%  Similarity=0.427  Sum_probs=75.7

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV   97 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~   97 (774)
                      ...++.|.+.+ .+.+|||+|.++.+  .+++|..|.+++||+++|+|++||+|++|||++|.++++.+++.+++.+++.
T Consensus        13 ~~~~~~v~l~~-~~~~lG~~l~~~~~--~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~   89 (111)
T 2dlu_A           13 WGHVEEVELIN-DGSGLGFGIVGGKT--SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNS   89 (111)
T ss_dssp             CSEEEEEEEEC-CSSCCCEEEECCSS--SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSE
T ss_pred             cCceEEEEEEe-CCCccCEEEeccCC--CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            34567777754 56789999998754  4899999999999999988999999999999999999999999999999999


Q ss_pred             EEEEeeecc
Q psy4897          98 VELEVGVGY  106 (774)
Q Consensus        98 V~L~V~R~~  106 (774)
                      |.|+|.|+.
T Consensus        90 v~l~v~R~~   98 (111)
T 2dlu_A           90 VRMLVARDP   98 (111)
T ss_dssp             EEEEEEESC
T ss_pred             EEEEEEeCC
Confidence            999998864

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.34  E-value=7.2e-12  Score=115.41  Aligned_cols=93  Identities=38%  Similarity=0.526  Sum_probs=82.3

Q ss_pred             cccceEEEEEeccCCCCcceEEeCCCCC---------CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHH
Q psy4897         171 VENQKRIIRVKKSENNGLGISIKGGKEN---------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA  241 (774)
Q Consensus       171 ~~~~~r~V~L~k~~~~~LGfsi~gg~~~---------~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~  241 (774)
                      ....++++.+.+....+|||.+.++.+.         ..+++|..|.+++||+++|.|++||+|++|||+++.++++.++
T Consensus        12 ~~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~   91 (117)
T 2ehr_A           12 HWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEA   91 (117)
T ss_dssp             CBCCCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHH
T ss_pred             cCCCCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            3446789999998778999999987643         3689999999999999998899999999999999999999999


Q ss_pred             HHHHHHcCcceEEEEEEecccc
Q psy4897         242 VKALKRAGKLVELEVKYLREVT  263 (774)
Q Consensus       242 v~~Lk~~g~~V~L~V~R~~~~~  263 (774)
                      +.+++..++.+.|+|.|.....
T Consensus        92 ~~~~~~~g~~v~l~v~r~~~~~  113 (117)
T 2ehr_A           92 VEAIKNAGNPVVFIVQSLSSTP  113 (117)
T ss_dssp             HHHHHTSCSSEEEEECCBSCCC
T ss_pred             HHHHHcCCCeEEEEEEECCCCC
Confidence            9999999999999998876654

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.34  E-value=7e-12  Score=110.85  Aligned_cols=85  Identities=27%  Similarity=0.428  Sum_probs=74.2

Q ss_pred             cEEEEEEeecCCcccEEEEccCC----CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCc
Q psy4897          21 FYSENYKYTENNGLGISIKGGKE----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK   96 (774)
Q Consensus        21 ~~~V~l~rk~~~gLGfsI~GG~e----~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~   96 (774)
                      .++|.+ +++..+|||++.++.+    ...+++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+++.+++
T Consensus         5 ~~~v~l-~~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   83 (97)
T 2iwn_A            5 TFDVEL-TKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQ   83 (97)
T ss_dssp             EEEEEE-ECBTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCCS
T ss_pred             EEEEEE-ecCCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            456666 4567889999998754    24689999999999999997799999999999999999999999999999999


Q ss_pred             eEEEEeeecc
Q psy4897          97 VVELEVGVGY  106 (774)
Q Consensus        97 ~V~L~V~R~~  106 (774)
                      .|.|+|.|+.
T Consensus        84 ~v~l~v~r~g   93 (97)
T 2iwn_A           84 TVLLTLMRRG   93 (97)
T ss_dssp             EEEEEEEEEE
T ss_pred             eEEEEEEeCC
Confidence            9999998865

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.34  E-value=2.5e-12  Score=128.95  Aligned_cols=87  Identities=32%  Similarity=0.498  Sum_probs=81.2

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV   97 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~   97 (774)
                      ...+++|.+.+.++.+|||+|.||.+...+++|..|.+||||+++| |++||+|++|||++|.++++.+++.+++. +..
T Consensus        82 ~~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~  159 (192)
T 3k1r_A           82 SRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRT-EKT  159 (192)
T ss_dssp             CSSCEEEEEETTSTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHTS-SSE
T ss_pred             CCceEEEEEEeCCCCceeEEEEcccccCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHcC-CCe
Confidence            4568899999998999999999998877899999999999999998 99999999999999999999999999988 899


Q ss_pred             EEEEeeecc
Q psy4897          98 VELEVGVGY  106 (774)
Q Consensus        98 V~L~V~R~~  106 (774)
                      |.|+|.|.+
T Consensus       160 v~l~v~r~g  168 (192)
T 3k1r_A          160 VSIKVRHIG  168 (192)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEECC
Confidence            999998865

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.34  E-value=3.5e-12  Score=117.14  Aligned_cols=90  Identities=34%  Similarity=0.523  Sum_probs=78.9

Q ss_pred             cCCCCcEEEEEEeecCCcccEEEEccCCCC-CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy4897          16 FSSRDFYSENYKYTENNGLGISIKGGKENK-MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA   94 (774)
Q Consensus        16 ~~s~~~~~V~l~rk~~~gLGfsI~GG~e~~-~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a   94 (774)
                      ....+.+.+.+. +...+|||+|.++.+.. .+++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++..
T Consensus        13 ~~~~~~~~v~l~-~~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~   91 (116)
T 2dm8_A           13 IVPGQEMIIEIS-KGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQT   91 (116)
T ss_dssp             CCTTSCEEEEEE-CCSSCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTC
T ss_pred             cCCCCEEEEEEE-ECCCcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            344556778875 45689999999887765 6899999999999999988999999999999999999999999999998


Q ss_pred             CceEEEEeeecc
Q psy4897          95 GKVVELEVGVGY  106 (774)
Q Consensus        95 g~~V~L~V~R~~  106 (774)
                      ++.|.|+|.|+.
T Consensus        92 ~~~v~l~v~R~~  103 (116)
T 2dm8_A           92 PQKVRLVVYRDE  103 (116)
T ss_dssp             CSEEEEEEECCS
T ss_pred             CCeEEEEEEeCC
Confidence            899999998865

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.34  E-value=1.6e-12  Score=114.33  Aligned_cols=84  Identities=25%  Similarity=0.256  Sum_probs=71.9

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE   99 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~   99 (774)
                      ..++|++.+.++ +|||+|.++.+ ..+++|..|.++|||+++| |++||+|++|||+++.++++.++..+++..++.+.
T Consensus         3 ~pr~v~l~k~~~-~~G~~l~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~   79 (91)
T 2vsp_A            3 KPKLCRLAKGEN-GYGFHLNAIRG-LPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVT   79 (91)
T ss_dssp             CEEEEEEECBTT-BTSCCCBCCTT-CSCCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEE
T ss_pred             CcEEEEEEeCCC-cccEEEEeccC-CCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEE
Confidence            567788866555 89999987644 3588999999999999998 99999999999999999999999999998899999


Q ss_pred             EEeeecc
Q psy4897         100 LEVGVGY  106 (774)
Q Consensus       100 L~V~R~~  106 (774)
                      |+|.|..
T Consensus        80 l~v~r~~   86 (91)
T 2vsp_A           80 LLVCGKK   86 (91)
T ss_dssp             EEEEC--
T ss_pred             EEEEeCC
Confidence            9998865

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.34  E-value=5.3e-12  Score=111.57  Aligned_cols=85  Identities=25%  Similarity=0.329  Sum_probs=73.2

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV   98 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V   98 (774)
                      ...+.+.+.+ +..+|||++.++.+. .+++|..|.++|||+++| |++||+|++|||+++.+++|.+++.+++.++..+
T Consensus         4 ~~~r~v~l~~-~~~~~G~~l~~~~~~-~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~   80 (95)
T 3r68_A            4 HQPRVVVIKK-GSNGYGFYLRAGPEQ-KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQT   80 (95)
T ss_dssp             CCCEEEEEEC-BTTBCSCEEEEC--C-CSEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEE
T ss_pred             CCcEEEEEec-CCCcccEEEEecCCC-CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            3456677755 678999999976543 589999999999999998 9999999999999999999999999999998988


Q ss_pred             EEEeeecc
Q psy4897          99 ELEVGVGY  106 (774)
Q Consensus        99 ~L~V~R~~  106 (774)
                      .+.+.|..
T Consensus        81 ~~~~~r~~   88 (95)
T 3r68_A           81 TLLVLDKE   88 (95)
T ss_dssp             EEEEEECC
T ss_pred             EEEEECCc
Confidence            88887754

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.34  E-value=4.2e-12  Score=114.58  Aligned_cols=91  Identities=46%  Similarity=0.673  Sum_probs=78.5

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      ..+.+.+.+....+|||++.++.+...+++|..|.+++||+++++|++||+|++|||+++.++++++++.+++..++.++
T Consensus         9 ~~~~v~l~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~v~   88 (103)
T 2dc2_A            9 PIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIE   88 (103)
T ss_dssp             CEEEEEEECCSSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCSEEE
T ss_pred             CcEEEEEEeCCCCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEE
Confidence            46788888887889999999876666789999999999999963499999999999999999999999999999888999


Q ss_pred             EEEEEeccccc
Q psy4897         254 LEVKYLREVTP  264 (774)
Q Consensus       254 L~V~R~~~~~~  264 (774)
                      |+|.+......
T Consensus        89 l~v~~~~~~~~   99 (103)
T 2dc2_A           89 FEVVYVALEHH   99 (103)
T ss_dssp             EEEEECC----
T ss_pred             EEEEecCCcch
Confidence            99988665443

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.32  E-value=5.6e-12  Score=109.72  Aligned_cols=85  Identities=49%  Similarity=0.739  Sum_probs=76.0

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      +++.+++.+....+|||.+.++.+...+++|..|.++|||+++++|++||+|++|||+++.++++++++.+++.+++.+.
T Consensus         2 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   81 (87)
T 4e34_A            2 PIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIE   81 (87)
T ss_dssp             CCEEEEEECCTTBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCCSEEE
T ss_pred             CEEEEEEEECCCCcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            36788999887789999999876666789999999999999942399999999999999999999999999999888999


Q ss_pred             EEEEE
Q psy4897         254 LEVKY  258 (774)
Q Consensus       254 L~V~R  258 (774)
                      |+|++
T Consensus        82 l~v~~   86 (87)
T 4e34_A           82 FEVVY   86 (87)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99875

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=99.00  E-value=1.3e-13  Score=126.93  Aligned_cols=96  Identities=43%  Similarity=0.593  Sum_probs=82.0

Q ss_pred             cccCCCccccccCCCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhh-hCCCCCCCEEEEECCEecCCCC
Q psy4897           5 LVLGGPTEAFFFSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQ-TEQLYVGDAILSVNGEDLREAT   83 (774)
Q Consensus         5 l~~~~~~~~~~~~s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAar-aG~LqvGD~ILsVNG~~V~~~s   83 (774)
                      ...++.+|..  ....+++|.+.++.+.+|||+|.+|.+...+++|..|.++|||++ +| |++||+|++|||++|.+.+
T Consensus        14 ~~~~~~me~~--~~~~~~~v~l~k~~~~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aG-L~~GD~Il~ING~~v~~~~   90 (112)
T 2lob_A           14 HIEGRHMENL--YFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTK   90 (112)
Confidence            3344444443  345677899999999999999999988778999999999999999 65 9999999999999999999


Q ss_pred             HHHHHHHHHhcCceEEEEee
Q psy4897          84 HDEAVKALKRAGKVVELEVG  103 (774)
Q Consensus        84 h~eaV~lLk~ag~~V~L~V~  103 (774)
                      +.+++.+++.++..|+|+|.
T Consensus        91 ~~~~~~~l~~~~~~v~l~V~  110 (112)
T 2lob_A           91 HKEAVTILSQQRGEIEFEVV  110 (112)
Confidence            99999999988888888774

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.32  E-value=7.2e-12  Score=116.24  Aligned_cols=88  Identities=26%  Similarity=0.525  Sum_probs=79.0

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCC---CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK  250 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~---~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~  250 (774)
                      ..+.+.+.+....+|||++.++.+   ...|++|..|.+++||+++|+|++||+|++|||+++.++++++++.+|+..++
T Consensus        24 ~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~  103 (118)
T 3b76_A           24 HEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSS  103 (118)
T ss_dssp             EEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCCS
T ss_pred             CcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            467888888777899999998763   35689999999999999998899999999999999999999999999999999


Q ss_pred             ceEEEEEEecc
Q psy4897         251 LVELEVKYLRE  261 (774)
Q Consensus       251 ~V~L~V~R~~~  261 (774)
                      .|+|+|.|...
T Consensus       104 ~v~L~v~R~~~  114 (118)
T 3b76_A          104 SIVLKALEVKE  114 (118)
T ss_dssp             EEEEEEEEEEE
T ss_pred             eEEEEEEECCC
Confidence            99999988653

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.32  E-value=6.9e-12  Score=117.12  Aligned_cols=90  Identities=32%  Similarity=0.441  Sum_probs=77.6

Q ss_pred             CCCCcEEEEEEeecCCcccEEEEccCCC---------CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHH
Q psy4897          17 SSRDFYSENYKYTENNGLGISIKGGKEN---------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA   87 (774)
Q Consensus        17 ~s~~~~~V~l~rk~~~gLGfsI~GG~e~---------~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~ea   87 (774)
                      .-.+.++|.+.+...++|||++.++.+.         ..|++|..|.++|||+++|.|++||+|++|||++|.++++.++
T Consensus        21 ~~~~p~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~  100 (123)
T 2iwq_A           21 QSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQA  100 (123)
T ss_dssp             --CCCEEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHH
T ss_pred             ccCCCEEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            3455688899888889999999976542         3589999999999999998899999999999999999999999


Q ss_pred             HHHHHhcCceEEEEeeecc
Q psy4897          88 VKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        88 V~lLk~ag~~V~L~V~R~~  106 (774)
                      +.+++..+..|.|+|.|..
T Consensus       101 ~~~l~~~~~~v~l~v~r~~  119 (123)
T 2iwq_A          101 VEAIRKAGNPVVFMVQSII  119 (123)
T ss_dssp             HHHHHHCCSSEEEEEECCC
T ss_pred             HHHHHcCCCeEEEEEEECC
Confidence            9999998889999998754

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.31  E-value=1.1e-11  Score=114.31  Aligned_cols=87  Identities=40%  Similarity=0.520  Sum_probs=77.4

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV   97 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~   97 (774)
                      ..++++|.+.+. ..+|||+|.++.+ ..+++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+++.+++.
T Consensus        12 ~~~~~~v~l~k~-~~glG~~l~~~~~-~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   89 (119)
T 1tp5_A           12 PREPRRIVIHRG-STGLGFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQT   89 (119)
T ss_dssp             CCSCEEEEEECT-TSCCCEEEEECGG-GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSE
T ss_pred             CCccEEEEEEEC-CCCccEEEecCCC-CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            457888888764 4679999998754 36899999999999999977999999999999999999999999999999999


Q ss_pred             EEEEeeecc
Q psy4897          98 VELEVGVGY  106 (774)
Q Consensus        98 V~L~V~R~~  106 (774)
                      +.|+|.|+.
T Consensus        90 v~l~v~r~~   98 (119)
T 1tp5_A           90 VTIIAQYKP   98 (119)
T ss_dssp             EEEEEEECH
T ss_pred             EEEEEEECC
Confidence            999998864

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.31  E-value=7.3e-12  Score=112.45  Aligned_cols=87  Identities=25%  Similarity=0.325  Sum_probs=75.8

Q ss_pred             CCCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCc
Q psy4897          17 SSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK   96 (774)
Q Consensus        17 ~s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~   96 (774)
                      +....++|++.+ +..+|||+|.++.+ ..+++|..|.++|||+++| |++||+|++|||++|.++++.+++.+++.+++
T Consensus         3 ~~~~~r~v~l~k-~~~g~G~~l~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~   79 (102)
T 2d90_A            3 SGSSGRVVVIKK-GSNGYGFYLRAGPE-QKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGD   79 (102)
T ss_dssp             SCSSSEEEEEEC-CSSSSSCEEEECSS-SSSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTSCHHHHHHHHHHSTT
T ss_pred             CCCCCEEEEEee-CCCCccEEEEeecC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            345667888865 55699999998543 4689999999999999998 99999999999999999999999999999899


Q ss_pred             eEEEEeeecc
Q psy4897          97 VVELEVGVGY  106 (774)
Q Consensus        97 ~V~L~V~R~~  106 (774)
                      .|.|+|.|+.
T Consensus        80 ~v~l~v~r~~   89 (102)
T 2d90_A           80 QTTLLVLDKE   89 (102)
T ss_dssp             EEEEEECSTT
T ss_pred             EEEEEEEECC
Confidence            9999998765

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.31  E-value=5.2e-12  Score=112.70  Aligned_cols=81  Identities=20%  Similarity=0.263  Sum_probs=70.2

Q ss_pred             EEEEeecCCcccEEEEccCCCC-------CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCc
Q psy4897          24 ENYKYTENNGLGISIKGGKENK-------MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK   96 (774)
Q Consensus        24 V~l~rk~~~gLGfsI~GG~e~~-------~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~   96 (774)
                      |++ ++++.+|||+|.++....       .|++|..|.++|||+++| |++||+|++|||+++.++++.+++.+++.+++
T Consensus         6 v~l-~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~   83 (99)
T 3khf_A            6 IVI-HSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSGN   83 (99)
T ss_dssp             EEE-EC-CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHHSCS
T ss_pred             EEE-EeCCCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCC
Confidence            444 567899999999764321       267999999999999998 99999999999999999999999999999999


Q ss_pred             eEEEEeeecc
Q psy4897          97 VVELEVGVGY  106 (774)
Q Consensus        97 ~V~L~V~R~~  106 (774)
                      .+.|+|.|..
T Consensus        84 ~v~l~v~r~~   93 (99)
T 3khf_A           84 KISLRTTALE   93 (99)
T ss_dssp             EEEEEEECSC
T ss_pred             EEEEEEEECC
Confidence            9999998865

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.31  E-value=2.2e-11  Score=109.87  Aligned_cols=87  Identities=32%  Similarity=0.572  Sum_probs=78.7

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcce
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLV  252 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V  252 (774)
                      ..++.+.+.+.....|||.+.++.+...+++|..|.+++||+++| |++||+|++|||+++.++++++++++|+. ++.+
T Consensus        14 ~~~~~v~l~k~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~v   91 (104)
T 1wi2_A           14 FLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKT-AREI   91 (104)
T ss_dssp             SCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHH-SSSE
T ss_pred             CCCEEEEEEeCCCCCccEEEEcccCCCCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC-CCEE
Confidence            457899999987789999999877666789999999999999998 99999999999999999999999999998 7899


Q ss_pred             EEEEEEecc
Q psy4897         253 ELEVKYLRE  261 (774)
Q Consensus       253 ~L~V~R~~~  261 (774)
                      .|+|+|...
T Consensus        92 ~l~v~r~~~  100 (104)
T 1wi2_A           92 SMRVRFFSG  100 (104)
T ss_dssp             EEEEECCCC
T ss_pred             EEEEEECCC
Confidence            999987644

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.31  E-value=2.4e-11  Score=110.71  Aligned_cols=86  Identities=29%  Similarity=0.348  Sum_probs=73.4

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCC---CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc--
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--   94 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~---~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a--   94 (774)
                      ..+.+.+ .+...+|||+|.++.+.   ..+++|..|.++|||+++|+|++||+|++|||++|.++++.+++.+++..  
T Consensus        11 ~~~~~~l-~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   89 (111)
T 2koj_A           11 KRLNIQL-KKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKM   89 (111)
T ss_dssp             EEEEEEE-ECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCC
T ss_pred             cEEEEEE-EECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            3444555 45668999999987543   26899999999999999977999999999999999999999999999985  


Q ss_pred             CceEEEEeeecc
Q psy4897          95 GKVVELEVGVGY  106 (774)
Q Consensus        95 g~~V~L~V~R~~  106 (774)
                      ++.|.|+|.|+.
T Consensus        90 g~~v~l~v~R~~  101 (111)
T 2koj_A           90 EGTVSLLVFRQE  101 (111)
T ss_dssp             SSEEEEEEEECC
T ss_pred             CCeEEEEEEeCC
Confidence            789999998865

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.31  E-value=7e-12  Score=116.58  Aligned_cols=89  Identities=25%  Similarity=0.334  Sum_probs=78.0

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCC----CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKE----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e----~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      ..+.++|++.+.+..+|||+|.++..    ...+++|..|.+++||+++|.|++||+|++|||++|.++++.+++.+++.
T Consensus        13 ~~~~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~   92 (122)
T 1v5q_A           13 HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRD   92 (122)
T ss_dssp             CEEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHH
T ss_pred             cceeEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            34677888878778999999998732    24679999999999999997799999999999999999999999999998


Q ss_pred             c--CceEEEEeeecc
Q psy4897          94 A--GKVVELEVGVGY  106 (774)
Q Consensus        94 a--g~~V~L~V~R~~  106 (774)
                      .  ++.|+|+|.|+.
T Consensus        93 ~~~g~~v~l~v~R~~  107 (122)
T 1v5q_A           93 SSITSKVTLEIEFDV  107 (122)
T ss_dssp             HTTTTCEEEEEEEEC
T ss_pred             CCCCCeEEEEEEECC
Confidence            6  789999998865

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.30  E-value=1.2e-11  Score=111.32  Aligned_cols=83  Identities=33%  Similarity=0.445  Sum_probs=69.8

Q ss_pred             EEEEEEeecCC---cccEEEEccCCC------------CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHH
Q psy4897          22 YSENYKYTENN---GLGISIKGGKEN------------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE   86 (774)
Q Consensus        22 ~~V~l~rk~~~---gLGfsI~GG~e~------------~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~e   86 (774)
                      ..+.+.+....   +|||+|.|+.+.            ..|++|..|.++|||+++| |++||+|++|||+++.++++.+
T Consensus         6 ~~i~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~   84 (104)
T 3sfj_A            6 QRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQ   84 (104)
T ss_dssp             EEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHH
T ss_pred             EEEEEEEccCCCCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHH
Confidence            34555554333   799999988763            4689999999999999998 9999999999999999999999


Q ss_pred             HHHHHHh-cCceEEEEeeec
Q psy4897          87 AVKALKR-AGKVVELEVGVG  105 (774)
Q Consensus        87 aV~lLk~-ag~~V~L~V~R~  105 (774)
                      ++.+++. .++.+.|+|.|+
T Consensus        85 ~~~~l~~~~g~~v~l~v~R~  104 (104)
T 3sfj_A           85 ARKRLTKRSEEVVRLLVTRQ  104 (104)
T ss_dssp             HHHHHTCTTCSEEEEEEEEC
T ss_pred             HHHHHHhCCCCEEEEEEEcC
Confidence            9999975 568899998763

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.30  E-value=4.7e-12  Score=117.67  Aligned_cols=88  Identities=35%  Similarity=0.510  Sum_probs=74.9

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCC---CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK  250 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~---~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~  250 (774)
                      ..+.|.|.+....+|||++.++.+   ...+++|..|.+++||+++|+|++||+|++|||+++.++++.+++.+++..++
T Consensus        24 ~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~  103 (120)
T 2iwo_A           24 GLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASG  103 (120)
T ss_dssp             -CEEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCCS
T ss_pred             CcEEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            578899998766799999998754   23579999999999999995599999999999999999999999999999998


Q ss_pred             ceEEEEEEecc
Q psy4897         251 LVELEVKYLRE  261 (774)
Q Consensus       251 ~V~L~V~R~~~  261 (774)
                      .++|+|.|...
T Consensus       104 ~v~l~v~r~g~  114 (120)
T 2iwo_A          104 SIEMQVVAGGD  114 (120)
T ss_dssp             EEEEEEECCTT
T ss_pred             eEEEEEEECCc
Confidence            99999998754

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=6.1e-12  Score=113.66  Aligned_cols=87  Identities=24%  Similarity=0.282  Sum_probs=76.9

Q ss_pred             CCCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCc
Q psy4897          17 SSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK   96 (774)
Q Consensus        17 ~s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~   96 (774)
                      .....+.|.+.+ ++.+|||+|.++.. ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++.+++.+++
T Consensus         5 ~~~~~r~v~l~k-~~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   81 (106)
T 2eei_A            5 SSGQPRLCYLVK-EGGSYGFSLKTVQG-KKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKSGS   81 (106)
T ss_dssp             CCSSSEEEEEEC-CSSSCSCCEECCSS-CCSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHHCS
T ss_pred             CCCCCEEEEEEE-CCCCCCEEEEeccC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            345678888876 68899999987643 4689999999999999998 99999999999999999999999999998899


Q ss_pred             eEEEEeeecc
Q psy4897          97 VVELEVGVGY  106 (774)
Q Consensus        97 ~V~L~V~R~~  106 (774)
                      .+.|+|.|..
T Consensus        82 ~v~l~v~r~~   91 (106)
T 2eei_A           82 RVMFLLVDKE   91 (106)
T ss_dssp             EEEEEECCTT
T ss_pred             eEEEEEEcCc
Confidence            9999998764

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.30  E-value=2.4e-11  Score=108.32  Aligned_cols=85  Identities=27%  Similarity=0.386  Sum_probs=73.7

Q ss_pred             ccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cC
Q psy4897         172 ENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AG  249 (774)
Q Consensus       172 ~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g  249 (774)
                      ..+.+.|.+.|. ..+|||++.++  ....+||++|.++++|+++|.|++||+|++|||++|.+++|.+++++|++  .+
T Consensus         3 ~g~~k~V~l~K~-~~~LG~tI~~~--g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g   79 (95)
T 3gge_A            3 KGIEKEVNVYKS-EDSLGLTITDN--GVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKE   79 (95)
T ss_dssp             CEEEEEEEEECC-SSCCCEEEECS--SSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTT
T ss_pred             CCeEEEEEEEEC-CCCceEEEEcC--CCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCC
Confidence            346788999996 58999999864  24568999999999999999999999999999999999999999999999  45


Q ss_pred             cceEEEEEEe
Q psy4897         250 KLVELEVKYL  259 (774)
Q Consensus       250 ~~V~L~V~R~  259 (774)
                      ..++|.+.+-
T Consensus        80 ~~~~L~lv~p   89 (95)
T 3gge_A           80 ELFTMKLIEP   89 (95)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEECc
Confidence            6778877654

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.29  E-value=5e-12  Score=115.34  Aligned_cols=89  Identities=39%  Similarity=0.504  Sum_probs=78.7

Q ss_pred             cCCCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcC
Q psy4897          16 FSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG   95 (774)
Q Consensus        16 ~~s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag   95 (774)
                      .....++.|++.+. ..+|||+|.++.+ ..+++|..|.+++||+++|+|++||+|++|||++|.++++.+++.+++..+
T Consensus        11 ~~~~~~~~v~l~k~-~~glG~~l~~~~~-~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~   88 (113)
T 1um7_A           11 GDAREPRKIILHKG-STGLGFNIVGGED-GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAG   88 (113)
T ss_dssp             CCCCSEEEEEEECC-SSCSSBCCBCCST-TCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCC
T ss_pred             cCCCceEEEEEEEC-CCcccEEEEeccC-CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            44677888988664 5899999998764 468999999999999999779999999999999999999999999999999


Q ss_pred             ceEEEEeeecc
Q psy4897          96 KVVELEVGVGY  106 (774)
Q Consensus        96 ~~V~L~V~R~~  106 (774)
                      +.+.|+|.|+.
T Consensus        89 ~~v~l~v~r~~   99 (113)
T 1um7_A           89 QSVTIVAQYRP   99 (113)
T ss_dssp             SEEEEEEECCH
T ss_pred             CcEEEEEEECc
Confidence            99999998764

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.29  E-value=7.7e-12  Score=113.91  Aligned_cols=88  Identities=27%  Similarity=0.345  Sum_probs=77.5

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC--CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc---
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA---  248 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~--~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~---  248 (774)
                      +.+++.|.+....+|||++.++.+.  ..+++|..|.+++||+++|+|++||+|++|||+++.++++++++++|+..   
T Consensus         5 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~   84 (108)
T 3cbz_A            5 NIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK   84 (108)
T ss_dssp             CEEEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTS
T ss_pred             eEEEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccC
Confidence            5788899887678999999987543  57899999999999999988999999999999999999999999999986   


Q ss_pred             CcceEEEEEEecc
Q psy4897         249 GKLVELEVKYLRE  261 (774)
Q Consensus       249 g~~V~L~V~R~~~  261 (774)
                      ++.|.|+|.|...
T Consensus        85 ~~~v~l~v~R~~~   97 (108)
T 3cbz_A           85 PGPIVLTVAKSGG   97 (108)
T ss_dssp             SSCEEEEEECCCC
T ss_pred             CCeEEEEEEeCCC
Confidence            5679999988644

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.29  E-value=1.4e-11  Score=114.82  Aligned_cols=89  Identities=25%  Similarity=0.346  Sum_probs=81.1

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      ..+.+.+.+....+|||++.++.+...+++|..|.+++||+++|+|++||+|++|||+++.++++++++.++++.++.+.
T Consensus        19 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~v~   98 (125)
T 3hpk_A           19 VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT   98 (125)
T ss_dssp             EEEEEEEECCTTSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEE
T ss_pred             CCeEEEEEeCCCCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            57788898888889999999987767889999999999999998899999999999999999999999999999888899


Q ss_pred             EEEEEeccc
Q psy4897         254 LEVKYLREV  262 (774)
Q Consensus       254 L~V~R~~~~  262 (774)
                      |+|.|.+..
T Consensus        99 l~v~r~~~~  107 (125)
T 3hpk_A           99 IHYNKLQAD  107 (125)
T ss_dssp             EEEEEECSC
T ss_pred             EEEEECCCC
Confidence            999986554

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.29  E-value=2.9e-11  Score=112.40  Aligned_cols=79  Identities=32%  Similarity=0.388  Sum_probs=69.7

Q ss_pred             eecCCcccEEEEccCCC---CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc--CceEEEEe
Q psy4897          28 YTENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GKVVELEV  102 (774)
Q Consensus        28 rk~~~gLGfsI~GG~e~---~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a--g~~V~L~V  102 (774)
                      .++..+|||+|.++.+.   ..+++|..|.|+|||+++|+|++||+|++|||++|.++++.+++.+++..  ++.|.|+|
T Consensus        37 ~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v  116 (121)
T 2kom_A           37 KKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLV  116 (121)
T ss_dssp             ECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEEE
T ss_pred             EcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEE
Confidence            45678999999987643   26899999999999999977999999999999999999999999999975  78999999


Q ss_pred             eecc
Q psy4897         103 GVGY  106 (774)
Q Consensus       103 ~R~~  106 (774)
                      .|+.
T Consensus       117 ~R~g  120 (121)
T 2kom_A          117 FRQE  120 (121)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            8753

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=99.29  E-value=1.1e-11  Score=111.88  Aligned_cols=82  Identities=22%  Similarity=0.325  Sum_probs=71.7

Q ss_pred             CcEEEEEEeecCCcccEEEEccC-------CCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHH
Q psy4897          20 DFYSENYKYTENNGLGISIKGGK-------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK   92 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~-------e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk   92 (774)
                      ..+.+.+.+..+++|||+|.+..       +...+++|..|.+++||+++| |++||+|++|||+++.++++.+++.+++
T Consensus        15 ~~~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~   93 (104)
T 2z17_A           15 QRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIR   93 (104)
T ss_dssp             CCCEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHH
Confidence            44567788888899999999832       334689999999999999998 9999999999999999999999999999


Q ss_pred             hcCceEEEEe
Q psy4897          93 RAGKVVELEV  102 (774)
Q Consensus        93 ~ag~~V~L~V  102 (774)
                      ..+..|+|+|
T Consensus        94 ~~~~~v~l~v  103 (104)
T 2z17_A           94 SSGNLLTIET  103 (104)
T ss_dssp             HTTTEEEEEC
T ss_pred             hCCCcEEEEE
Confidence            9877888776

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.29  E-value=4e-12  Score=113.96  Aligned_cols=87  Identities=39%  Similarity=0.499  Sum_probs=74.9

Q ss_pred             CCCcEEEEEEee-cCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCc
Q psy4897          18 SRDFYSENYKYT-ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK   96 (774)
Q Consensus        18 s~~~~~V~l~rk-~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~   96 (774)
                      ..+++++.+.+. ...+|||+|.++.+...+++|..|.+++||+++| |++||+|++|||++|.++++.+++..++. ++
T Consensus         6 ~~~~~~v~l~~~~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~   83 (101)
T 1uez_A            6 SGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKG-SK   83 (101)
T ss_dssp             SCCCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSS-SS
T ss_pred             CCccEEEEEEECCCCCcccEEEeCCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHhhcC-CC
Confidence            456788888774 5789999999988777899999999999999998 99999999999999999999877766654 46


Q ss_pred             eEEEEeeecc
Q psy4897          97 VVELEVGVGY  106 (774)
Q Consensus        97 ~V~L~V~R~~  106 (774)
                      .|.|+|.|+.
T Consensus        84 ~v~l~v~R~g   93 (101)
T 1uez_A           84 KLVLSVYSAG   93 (101)
T ss_dssp             SCCEEECCCC
T ss_pred             eEEEEEEECC
Confidence            7889998765

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.29  E-value=2e-11  Score=114.86  Aligned_cols=89  Identities=31%  Similarity=0.489  Sum_probs=77.2

Q ss_pred             ccceEEEEEeccCCCCcceEEeCCCC---CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc
Q psy4897         172 ENQKRIIRVKKSENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA  248 (774)
Q Consensus       172 ~~~~r~V~L~k~~~~~LGfsi~gg~~---~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~  248 (774)
                      ....+.+.+.+. ..+|||.+.++.+   ...+++|..|.+++||+++|+|++||+|++|||+++.+++|++++++|+..
T Consensus        27 ~~~~~~v~l~k~-~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~  105 (130)
T 1i16_A           27 EATVCTVTLEKM-SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL  105 (130)
T ss_dssp             SEEEEEEEEETT-SSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTS
T ss_pred             CCcEEEEEEEcC-CCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            345778888885 6789999999876   356899999999999999966999999999999999999999999999986


Q ss_pred             C-cceEEEEEEecc
Q psy4897         249 G-KLVELEVKYLRE  261 (774)
Q Consensus       249 g-~~V~L~V~R~~~  261 (774)
                      + ..+.|+|.|...
T Consensus       106 ~~~~v~l~v~r~~~  119 (130)
T 1i16_A          106 PDGPVTIVIRRKSL  119 (130)
T ss_dssp             CSSEEEEEEEEESS
T ss_pred             CCceEEEEEEeCCC
Confidence            4 569999988643

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.5e-11  Score=108.14  Aligned_cols=87  Identities=38%  Similarity=0.577  Sum_probs=77.3

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      .+|++++.+. ..+|||.+.++.+...+++|..|.+++||+++|+|++||+|++|||+++.++++.+++.+++..++.+.
T Consensus         5 ~~r~v~l~k~-~~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   83 (93)
T 2dkr_A            5 SSGVVELPKT-DEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVK   83 (93)
T ss_dssp             CSCEEEEECC-TTCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEEEeC-CCCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEE
Confidence            4678888885 589999999877667899999999999999996699999999999999999999999999998888899


Q ss_pred             EEEEEecc
Q psy4897         254 LEVKYLRE  261 (774)
Q Consensus       254 L~V~R~~~  261 (774)
                      |+|.|.+.
T Consensus        84 l~v~r~~~   91 (93)
T 2dkr_A           84 LVVRSGPS   91 (93)
T ss_dssp             EEECCCCS
T ss_pred             EEEEeCCC
Confidence            99987543

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.28  E-value=1.6e-11  Score=112.45  Aligned_cols=86  Identities=29%  Similarity=0.408  Sum_probs=77.0

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV   97 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~   97 (774)
                      .....+|.+.+++..+|||+|.++.+...+++|..|.+++||+++| |++||+|++|||++|.++++.+++.+++.. ..
T Consensus        13 ~~~~~~v~~~~~~~~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~   90 (114)
T 1x5n_A           13 ENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RS   90 (114)
T ss_dssp             CCSSEEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHC-SS
T ss_pred             CCCcEEEEEEEcCCCceeEEEeecCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-Ce
Confidence            3345788888999999999999987777899999999999999998 999999999999999999998888888876 57


Q ss_pred             EEEEeeec
Q psy4897          98 VELEVGVG  105 (774)
Q Consensus        98 V~L~V~R~  105 (774)
                      +.|+|.|+
T Consensus        91 v~l~v~r~   98 (114)
T 1x5n_A           91 LTISIVAA   98 (114)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEEcC
Confidence            89999876

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.28  E-value=1.8e-11  Score=107.20  Aligned_cols=86  Identities=31%  Similarity=0.451  Sum_probs=75.4

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcC--cc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG--KL  251 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g--~~  251 (774)
                      +.+.+.+.+. ..+|||.+.++.+...|++|..|.+++||+++|.|++||+|++|||+++.+.++.+++.+|+..+  ..
T Consensus         2 ~~~~v~l~~~-~~g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~   80 (90)
T 2q9v_A            2 MEQDIFLWRK-ETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGH   80 (90)
T ss_dssp             EEEEEEEECB-TTBCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTE
T ss_pred             CcEEEEEEEC-CCccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCe
Confidence            3677888886 47899999988766678999999999999999889999999999999999999999999999854  48


Q ss_pred             eEEEEEEec
Q psy4897         252 VELEVKYLR  260 (774)
Q Consensus       252 V~L~V~R~~  260 (774)
                      +.|+|.|.+
T Consensus        81 v~l~v~R~~   89 (90)
T 2q9v_A           81 VNLTVRQTR   89 (90)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecc
Confidence            999998753

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.28  E-value=2.5e-12  Score=111.07  Aligned_cols=80  Identities=28%  Similarity=0.498  Sum_probs=70.2

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE   99 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~   99 (774)
                      .+++|++.+. ..+|||++.++    .+++|..|.++|||+++| |++||+|++|||+++.+++|.+++.+++..++.+.
T Consensus         2 ~~r~v~l~~~-~~g~G~~~~~~----~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~   75 (83)
T 2kv8_A            2 RVRSVEVARG-RAGYGFTLSGQ----APCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLH   75 (83)
T ss_dssp             CEEEEEECCC-SSCCSCBCCCS----SSCBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEE
T ss_pred             CcEEEEEEeC-CCcccEEEEcC----CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            3567777554 48899998764    379999999999999998 99999999999999999999999999998888899


Q ss_pred             EEeeec
Q psy4897         100 LEVGVG  105 (774)
Q Consensus       100 L~V~R~  105 (774)
                      |+|.|+
T Consensus        76 l~v~R~   81 (83)
T 2kv8_A           76 MVIAEG   81 (83)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999875

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.28  E-value=3.7e-11  Score=108.88  Aligned_cols=89  Identities=31%  Similarity=0.468  Sum_probs=78.0

Q ss_pred             ccceEEEEEeccCCCCcceEEeCCCCC--------CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHH
Q psy4897         172 ENQKRIIRVKKSENNGLGISIKGGKEN--------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK  243 (774)
Q Consensus       172 ~~~~r~V~L~k~~~~~LGfsi~gg~~~--------~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~  243 (774)
                      ..+.+++.+.+. ..+|||.+.++.+.        ..+++|..|.+++||+++|+|++||+|++|||+++.++++.+++.
T Consensus         6 ~~~~~~v~l~k~-~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~   84 (107)
T 1uhp_A            6 SGKSLTLVLHRD-SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVE   84 (107)
T ss_dssp             SSEEEEEEECCS-SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHH
T ss_pred             CcEEEEEEEEeC-CCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            346788999886 78999999987542        468999999999999999459999999999999999999999999


Q ss_pred             HHHHcCcceEEEEEEecc
Q psy4897         244 ALKRAGKLVELEVKYLRE  261 (774)
Q Consensus       244 ~Lk~~g~~V~L~V~R~~~  261 (774)
                      +++..++.+.|+|.|...
T Consensus        85 ~~~~~~~~v~l~v~R~~~  102 (107)
T 1uhp_A           85 AFKTAKEPIVVQVLRRTS  102 (107)
T ss_dssp             HHHHCCSSEEEEEEECCS
T ss_pred             HHHcCCCcEEEEEEeCCC
Confidence            999999999999987543

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.28  E-value=1.8e-11  Score=108.88  Aligned_cols=87  Identities=30%  Similarity=0.475  Sum_probs=77.1

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCC------CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENK------MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR  247 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~------~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~  247 (774)
                      ..+.+++.+....+|||++.++.+..      .+++|..|.+++||+++|.|++||+|++|||+++.++++.++..+++.
T Consensus         5 ~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~   84 (98)
T 1ihj_A            5 LIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE   84 (98)
T ss_dssp             EEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             eEEEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            36788899877889999998865433      379999999999999997799999999999999999999999999999


Q ss_pred             cCcceEEEEEEec
Q psy4897         248 AGKLVELEVKYLR  260 (774)
Q Consensus       248 ~g~~V~L~V~R~~  260 (774)
                      .++.+.|+|.|.+
T Consensus        85 ~g~~v~l~v~R~g   97 (98)
T 1ihj_A           85 ADFKIELEIQTFD   97 (98)
T ss_dssp             SCSEEEEEEEEC-
T ss_pred             CCCeEEEEEEeCC
Confidence            9999999999864

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.27  E-value=1.6e-11  Score=107.22  Aligned_cols=83  Identities=22%  Similarity=0.252  Sum_probs=68.9

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCc
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGK   96 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~   96 (774)
                      .++++|++.+ +..+|||++.+..+ ..+++|..| ++|||+ +| |++||+|++|||+++.++++.+++.++++  .++
T Consensus         2 ~~~~~v~l~k-~~~g~G~~~~~~~~-~~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~   76 (88)
T 3bpu_A            2 MELITVHIVK-GPMGFGFTIADSPG-GGGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGS   76 (88)
T ss_dssp             EEEEEEEEEC-BTTBSSCEEEECTT-SSSEEEEEC-CC--CC-TT-CCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTC
T ss_pred             CcEEEEEEEc-CCCceeEEEEecCC-CCcEEEEEe-cCChhH-hC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCC
Confidence            3577888866 55899999996543 358999887 999999 76 99999999999999999999999999985  588


Q ss_pred             eEEEEeeecc
Q psy4897          97 VVELEVGVGY  106 (774)
Q Consensus        97 ~V~L~V~R~~  106 (774)
                      .+.|+|.|+.
T Consensus        77 ~v~l~v~R~g   86 (88)
T 3bpu_A           77 EVTLLVQRQT   86 (88)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEeCC
Confidence            9999998764

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.27  E-value=1.8e-11  Score=110.27  Aligned_cols=88  Identities=26%  Similarity=0.400  Sum_probs=78.1

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc--Cc
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GK  250 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~--g~  250 (774)
                      .+.+.+.+.+ ...+|||.+.++.+...+++|..|.+++||+++|.|++||+|++|||++|.++++++++++|+..  +.
T Consensus         8 ~~~~~v~l~~-~~~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~   86 (103)
T 1uep_A            8 YKELDVHLRR-MESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNG   86 (103)
T ss_dssp             EEEECCEEES-SSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEEEe-CCCccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            3466777887 46789999998876678899999999999999988999999999999999999999999999985  78


Q ss_pred             ceEEEEEEecc
Q psy4897         251 LVELEVKYLRE  261 (774)
Q Consensus       251 ~V~L~V~R~~~  261 (774)
                      .|.|+|.|...
T Consensus        87 ~v~l~v~R~~~   97 (103)
T 1uep_A           87 QVNLTVRRKVL   97 (103)
T ss_dssp             EEEEEEEEECC
T ss_pred             cEEEEEEeCCC
Confidence            99999998754

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.26  E-value=3.7e-11  Score=109.71  Aligned_cols=87  Identities=26%  Similarity=0.369  Sum_probs=75.0

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCCC--CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc--
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--  248 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~~--~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~--  248 (774)
                      ...+.+.+.+.  .+|||++.++.+.  ..+++|..|.+++||+++|+|++||+|++|||+++.+++|++++++|+..  
T Consensus        14 ~~~~~v~l~k~--~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~   91 (109)
T 1wi4_A           14 PAFRVITVTKE--TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKL   91 (109)
T ss_dssp             TTEEEEEECCS--SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCC
T ss_pred             CcEEEEEEeCC--CccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcccc
Confidence            35778888874  7999999987653  34799999999999999988999999999999999999999999999984  


Q ss_pred             --CcceEEEEEEecc
Q psy4897         249 --GKLVELEVKYLRE  261 (774)
Q Consensus       249 --g~~V~L~V~R~~~  261 (774)
                        +..++|.+.|...
T Consensus        92 r~~~~~~l~v~R~~~  106 (109)
T 1wi4_A           92 RSESPWEIAFIRSGP  106 (109)
T ss_dssp             SSSSCEEEEEECCCC
T ss_pred             CCCceEEEEEEeCCC
Confidence              5788888887543

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.26  E-value=1.5e-11  Score=111.27  Aligned_cols=86  Identities=35%  Similarity=0.591  Sum_probs=76.9

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhcc-CCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc-
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTE-QLYVGDAILSVNGEDLREATHDEAVKALKRAGK-  250 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG-~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~-  250 (774)
                      ...+.+.+.+....+|||.+.++.+...+++|..|.+++||+++| +|++||+|++|||++|.++++.+++.+|+..+. 
T Consensus        16 ~~~~~v~l~~~~~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~   95 (107)
T 3nfk_A           16 DNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCER   95 (107)
T ss_dssp             CCCEEEEECCCTTSCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGS
T ss_pred             CCEEEEEEEcCCCCCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhcccc
Confidence            457889998877789999999876666789999999999999998 499999999999999999999999999998764 


Q ss_pred             ---ceEEEEEE
Q psy4897         251 ---LVELEVKY  258 (774)
Q Consensus       251 ---~V~L~V~R  258 (774)
                         .+.|+|.|
T Consensus        96 ~~~~v~l~v~r  106 (107)
T 3nfk_A           96 HSGELMLLVRP  106 (107)
T ss_dssp             BTTBEEEEEEC
T ss_pred             CCcEEEEEEEc
Confidence               89999876

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.26  E-value=2.8e-11  Score=107.55  Aligned_cols=84  Identities=27%  Similarity=0.517  Sum_probs=73.7

Q ss_pred             ceEEEEEeccCCCCcceEEeC-------CCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy4897         174 QKRIIRVKKSENNGLGISIKG-------GKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK  246 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~g-------g~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk  246 (774)
                      +++++.+.+....+|||.+.+       +.+...+++|..|.+++||+++| |++||+|++|||+++.+++++++.++|+
T Consensus         4 ~~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~   82 (96)
T 2ego_A            4 QRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIK   82 (96)
T ss_dssp             CEEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             ccEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            478899999877899999986       33334589999999999999998 9999999999999999999999999999


Q ss_pred             HcCcceEEEEEE
Q psy4897         247 RAGKLVELEVKY  258 (774)
Q Consensus       247 ~~g~~V~L~V~R  258 (774)
                      ..++.+.|+|.+
T Consensus        83 ~~~~~v~l~v~~   94 (96)
T 2ego_A           83 ASGNVLRLETLY   94 (96)
T ss_dssp             HTTTEEEEEEEC
T ss_pred             hCCCeEEEEEEE
Confidence            988899998875

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=99.26  E-value=2.7e-11  Score=111.62  Aligned_cols=83  Identities=20%  Similarity=0.201  Sum_probs=70.5

Q ss_pred             CCCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc--
Q psy4897          17 SSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--   94 (774)
Q Consensus        17 ~s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a--   94 (774)
                      ...++++|+|.|. ..||||+|.++   ..+.+|..|.+  +|+.+| |++||+|++|||++|.+++|.+++.+|+.+  
T Consensus         9 ~~~~~~~V~L~Kg-~~G~GFsI~~~---~~g~~V~~I~~--~~~~aG-L~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~   81 (113)
T 3soe_A            9 KAGLLVTIPLIKG-PKGFGFAIADS---PTGQKVKMILD--SQWCQG-LQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPV   81 (113)
T ss_dssp             HHCEEEEEEEECB-TTBSSEEEEEE---TTEEEEEEESC--GGGSTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHSCT
T ss_pred             CCCCEEEEEEEEC-CCcccEEEeCC---CCCcEEEEecC--hHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            3457788999764 77999999765   34678999998  466655 999999999999999999999999999986  


Q ss_pred             CceEEEEeeecc
Q psy4897          95 GKVVELEVGVGY  106 (774)
Q Consensus        95 g~~V~L~V~R~~  106 (774)
                      ++.|+|+|.|..
T Consensus        82 G~~v~L~V~R~g   93 (113)
T 3soe_A           82 GADVPLLILRGG   93 (113)
T ss_dssp             TCEEEEEEEESS
T ss_pred             CCEEEEEEEECC
Confidence            779999999976

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.26  E-value=4.5e-11  Score=107.01  Aligned_cols=87  Identities=37%  Similarity=0.540  Sum_probs=77.6

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC-----CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA  248 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~-----~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~  248 (774)
                      ..+.+++.+.. .+|||++.++.+.     ..+++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++..
T Consensus         7 ~~~~v~l~~~~-~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   85 (101)
T 2jik_A            7 TEEEINLTRGP-SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA   85 (101)
T ss_dssp             EEEEEEEECCT-TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTC
T ss_pred             ccEEEEEEeCC-CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            47888898864 8999999987653     36899999999999999977999999999999999999999999999988


Q ss_pred             CcceEEEEEEecc
Q psy4897         249 GKLVELEVKYLRE  261 (774)
Q Consensus       249 g~~V~L~V~R~~~  261 (774)
                      ++.+.|+|.|.+.
T Consensus        86 g~~v~l~v~R~~~   98 (101)
T 2jik_A           86 GYAVSLRVQHRLE   98 (101)
T ss_dssp             CSEEEEEEEEESC
T ss_pred             CCeEEEEEEeCCC
Confidence            8899999988754

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.26  E-value=2.2e-12  Score=116.33  Aligned_cols=80  Identities=25%  Similarity=0.384  Sum_probs=73.0

Q ss_pred             EEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeec
Q psy4897          26 YKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVG  105 (774)
Q Consensus        26 l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~  105 (774)
                      +..++..+|||+|.++.+...+++|..|.++|||+++| |++||+|++|||+++.++++.+++.+++..++.+.|+|.|+
T Consensus         9 v~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~   87 (103)
T 1v5l_A            9 VVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRA   87 (103)
T ss_dssp             CEEESSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCC
T ss_pred             EEEcCCCCcCEEEeccccCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEEC
Confidence            34457789999999988776789999999999999998 99999999999999999999999999998899999999887


Q ss_pred             c
Q psy4897         106 Y  106 (774)
Q Consensus       106 ~  106 (774)
                      .
T Consensus        88 g   88 (103)
T 1v5l_A           88 E   88 (103)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.25  E-value=2.8e-11  Score=106.08  Aligned_cols=85  Identities=20%  Similarity=0.354  Sum_probs=73.7

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEE
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVEL  254 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L  254 (774)
                      .|.|.+.|....++||++.+..  ..+++|.+|.+++||+++++|++||+|++|||+++.++++++++++|+..+..++|
T Consensus         2 ~r~V~l~K~~~~~lG~~i~~~~--~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l   79 (88)
T 1kwa_A            2 SRLVQFQKNTDEPMGITLKMNE--LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITF   79 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSC--GGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEE
T ss_pred             eEEEEEEeCCCCceeEEEEeCC--CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEE
Confidence            5789999987789999998742  35799999999999999445999999999999999988999999999987668889


Q ss_pred             EEEEecc
Q psy4897         255 EVKYLRE  261 (774)
Q Consensus       255 ~V~R~~~  261 (774)
                      +|.|...
T Consensus        80 ~v~r~~~   86 (88)
T 1kwa_A           80 KIVPSYR   86 (88)
T ss_dssp             EEECCCC
T ss_pred             EEECCcC
Confidence            8887543

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.25  E-value=2.3e-11  Score=112.26  Aligned_cols=90  Identities=31%  Similarity=0.408  Sum_probs=77.7

Q ss_pred             ccceEEEEEeccC------CCCcceEEeCCCCC-----CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHH
Q psy4897         172 ENQKRIIRVKKSE------NNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE  240 (774)
Q Consensus       172 ~~~~r~V~L~k~~------~~~LGfsi~gg~~~-----~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e  240 (774)
                      ....+.+.+.+..      ..+|||++.++.+.     ..+++|..|.+++||+++|+|++||+|++|||+++.++++.+
T Consensus        10 ~~~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~   89 (117)
T 1ujd_A           10 IFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEE   89 (117)
T ss_dssp             SSCEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHH
T ss_pred             CCceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHH
Confidence            3346778887765      47899999887542     247999999999999999889999999999999999999999


Q ss_pred             HHHHHHHcCcceEEEEEEecc
Q psy4897         241 AVKALKRAGKLVELEVKYLRE  261 (774)
Q Consensus       241 ~v~~Lk~~g~~V~L~V~R~~~  261 (774)
                      ++.+|+.+++.+.|+|.|...
T Consensus        90 ~~~~l~~~~~~v~l~v~R~~~  110 (117)
T 1ujd_A           90 VQSIISQQSGEAEICVRLDLN  110 (117)
T ss_dssp             HHHHHSCCSSCEEEEEESSCC
T ss_pred             HHHHHhcCCCEEEEEEEECCc
Confidence            999999989999999988654

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.25  E-value=4.9e-11  Score=104.81  Aligned_cols=86  Identities=38%  Similarity=0.538  Sum_probs=76.8

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      +.+.+++.+....+|||.+.++.+ ..+++|..|.++|||+++|.|++||+|++|||+++.+.+++++..+++..++.+.
T Consensus         4 ~~~~v~l~k~~~~~lG~~~~~~~~-~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   82 (92)
T 2qg1_A            4 DTLTIGLQKKPGKGLGLSIVGKRN-DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVT   82 (92)
T ss_dssp             CEEEEEEECCTTSCCSEEEECCSS-SCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEE
T ss_pred             eEEEEEEEeCCCCcccEEEEeccC-CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            367788888777899999988643 4689999999999999998899999999999999999999999999999889999


Q ss_pred             EEEEEec
Q psy4897         254 LEVKYLR  260 (774)
Q Consensus       254 L~V~R~~  260 (774)
                      |+|.|..
T Consensus        83 l~v~R~~   89 (92)
T 2qg1_A           83 LEVGRIS   89 (92)
T ss_dssp             EEEECCC
T ss_pred             EEEEccc
Confidence            9998764

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.25  E-value=2.9e-11  Score=105.30  Aligned_cols=83  Identities=24%  Similarity=0.452  Sum_probs=73.0

Q ss_pred             EEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEE
Q psy4897         178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK  257 (774)
Q Consensus       178 V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~  257 (774)
                      +++......+|||.+.++.+...+++|..|.+++||+++| |++||+|++|||+++.+++++++.++|+..++.+.|+|.
T Consensus         4 ~~v~~~~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~   82 (87)
T 2pa1_A            4 LTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLD   82 (87)
T ss_dssp             EEEEECSSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEEEE
T ss_pred             EEEEECCCCccCEEEecccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence            3444456789999999876666789999999999999998 999999999999999999999999999987789999999


Q ss_pred             Eecc
Q psy4897         258 YLRE  261 (774)
Q Consensus       258 R~~~  261 (774)
                      |.+.
T Consensus        83 R~~~   86 (87)
T 2pa1_A           83 RITS   86 (87)
T ss_dssp             ECCC
T ss_pred             ecCC
Confidence            8653

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.24  E-value=3.1e-11  Score=111.44  Aligned_cols=88  Identities=26%  Similarity=0.354  Sum_probs=78.3

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCC-CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcce
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENK-MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLV  252 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~-~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V  252 (774)
                      ..+.+.+.+....+|||.+.++.+.. .+++|..|.+++||+++|.|++||+|++|||+++.+.++++++++|+..+..+
T Consensus        15 ~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v   94 (117)
T 1v62_A           15 GPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKV   94 (117)
T ss_dssp             SSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEE
T ss_pred             CcEEEEEEcCCCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            57889999987789999998865433 34999999999999999889999999999999999999999999999889999


Q ss_pred             EEEEEEecc
Q psy4897         253 ELEVKYLRE  261 (774)
Q Consensus       253 ~L~V~R~~~  261 (774)
                      .|+|.|...
T Consensus        95 ~l~v~r~~~  103 (117)
T 1v62_A           95 RLEILPVPQ  103 (117)
T ss_dssp             EEEECCBTT
T ss_pred             EEEEEECCC
Confidence            999987654

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.24  E-value=6.4e-11  Score=106.18  Aligned_cols=88  Identities=41%  Similarity=0.554  Sum_probs=77.8

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC-----CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA  248 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~-----~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~  248 (774)
                      +.+.+.+.+. ..+|||++.++.+.     ..+++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++..
T Consensus         4 ~~~~v~l~k~-~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   82 (102)
T 2i1n_A            4 KYEEIVLERG-NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEA   82 (102)
T ss_dssp             EEEEEEEECB-TTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHS
T ss_pred             eEEEEEEEEC-CCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3577888875 67899999987543     46899999999999999988999999999999999999999999999999


Q ss_pred             CcceEEEEEEeccc
Q psy4897         249 GKLVELEVKYLREV  262 (774)
Q Consensus       249 g~~V~L~V~R~~~~  262 (774)
                      +..+.|+|.|.+..
T Consensus        83 g~~v~l~v~R~~~~   96 (102)
T 2i1n_A           83 GPVVRLVVRRRQPP   96 (102)
T ss_dssp             CSEEEEEEEEECCC
T ss_pred             CCeEEEEEEeCCCC
Confidence            99999999987653

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.24  E-value=4.3e-11  Score=105.77  Aligned_cols=81  Identities=26%  Similarity=0.356  Sum_probs=70.0

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV   98 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V   98 (774)
                      ...++|.+. ++..+|||.+.+.    .+++|..|.++|||+++| |++||+|++|||+++.++++.+++..++ .++.|
T Consensus         7 ~~~r~v~l~-~~~~~~G~~l~~~----~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~-~g~~v   79 (93)
T 2dls_A            7 GVQRCVIIQ-KDQHGFGFTVSGD----RIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAYV   79 (93)
T ss_dssp             CCEEEEEEE-CSSSSCCEEEECS----SSCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHT-SSSEE
T ss_pred             CCCEEEEEE-eCCCceeEEEeCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhc-CCCEE
Confidence            345667764 5668999999863    579999999999999998 9999999999999999999998888776 68999


Q ss_pred             EEEeeecc
Q psy4897          99 ELEVGVGY  106 (774)
Q Consensus        99 ~L~V~R~~  106 (774)
                      .|+|.|+.
T Consensus        80 ~l~v~R~~   87 (93)
T 2dls_A           80 ALTLLGSS   87 (93)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEECC
Confidence            99998864

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.24  E-value=5.6e-11  Score=104.93  Aligned_cols=75  Identities=21%  Similarity=0.371  Sum_probs=65.4

Q ss_pred             EEEEEE-eecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEE
Q psy4897          22 YSENYK-YTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVEL  100 (774)
Q Consensus        22 ~~V~l~-rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L  100 (774)
                      ..+.+. .+...+|||.+.+|       +|.+|.++|||+++| |++||+|++|||++|.+.++.+++.+++++++.|.|
T Consensus        13 ~~~~i~~~~~~~~lG~~~~~G-------~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l   84 (90)
T 1y7n_A           13 TTVLIRRPDLRYQLGFSVQNG-------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHM   84 (90)
T ss_dssp             EEEEEEESSTTSCCCEEEETT-------EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEE
T ss_pred             ceEEEEeCCCccccCeEecCC-------EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            344444 44568999999754       899999999999998 999999999999999999999999999999999999


Q ss_pred             Eeee
Q psy4897         101 EVGV  104 (774)
Q Consensus       101 ~V~R  104 (774)
                      +|.+
T Consensus        85 ~v~p   88 (90)
T 1y7n_A           85 KTMP   88 (90)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            9864

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.24  E-value=7e-11  Score=105.06  Aligned_cols=88  Identities=33%  Similarity=0.492  Sum_probs=76.5

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      ..+.+.+.+ ..++|||.+.++.+...+++|..|.+++||+++|.|++||+|++|||+++.++++++++.+++..++.+.
T Consensus         5 ~~~~v~l~~-~~~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~   83 (97)
T 1n7e_A            5 IIYTVELKR-YGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVT   83 (97)
T ss_dssp             CEEEEEEEC-TTSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred             eEEEEEEEe-CCCCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            356777766 4677999999876555789999999999999997799999999999999999999999999998889999


Q ss_pred             EEEEEeccc
Q psy4897         254 LEVKYLREV  262 (774)
Q Consensus       254 L~V~R~~~~  262 (774)
                      |+|.|.+..
T Consensus        84 l~v~R~~~~   92 (97)
T 1n7e_A           84 LKIKKQTDA   92 (97)
T ss_dssp             EEEECCCCC
T ss_pred             EEEEeCCCC
Confidence            999886543

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.24  E-value=3e-11  Score=115.22  Aligned_cols=88  Identities=31%  Similarity=0.388  Sum_probs=75.6

Q ss_pred             CCCcEEEEEEeecC---CcccEEEEccCC------------CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCC
Q psy4897          18 SRDFYSENYKYTEN---NGLGISIKGGKE------------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA   82 (774)
Q Consensus        18 s~~~~~V~l~rk~~---~gLGfsI~GG~e------------~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~   82 (774)
                      +..+++|.+.+.+.   .+|||+|.+|.+            ...|++|..|.++|||+++| |++||+|++|||++|.++
T Consensus        21 ~~~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~   99 (139)
T 2vz5_A           21 QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMV   99 (139)
T ss_dssp             -CEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTC
T ss_pred             CCceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEcCCC
Confidence            44667788876543   489999998865            24689999999999999998 999999999999999999


Q ss_pred             CHHHHHHHHHh-cCceEEEEeeecc
Q psy4897          83 THDEAVKALKR-AGKVVELEVGVGY  106 (774)
Q Consensus        83 sh~eaV~lLk~-ag~~V~L~V~R~~  106 (774)
                      ++.+++.+++. .|+.|.|+|.|++
T Consensus       100 ~~~~~~~~l~~~~g~~v~l~v~R~g  124 (139)
T 2vz5_A          100 THDQARKRLTKRSEEVVRLLVTRQS  124 (139)
T ss_dssp             CHHHHHHHHCCTTCSEEEEEEEECC
T ss_pred             CHHHHHHHHHhCCCCEEEEEEEECC
Confidence            99999999986 5789999999875

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.24  E-value=5.1e-11  Score=110.12  Aligned_cols=87  Identities=40%  Similarity=0.528  Sum_probs=76.6

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC-----CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA  248 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~-----~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~  248 (774)
                      +.+.+.+.+. ..+|||++.++.+.     ..+++|..|.+++||+++|+|++||+|++|||++|.++++++++.+++..
T Consensus        24 ~~~~v~l~k~-~~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~  102 (117)
T 2byg_A           24 TVVEIKLFKG-PKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNT  102 (117)
T ss_dssp             EEEEEEEECB-TTBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             ceEEEEEEeC-CCCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            4567788775 48999999987542     35899999999999999988999999999999999999999999999998


Q ss_pred             CcceEEEEEEecc
Q psy4897         249 GKLVELEVKYLRE  261 (774)
Q Consensus       249 g~~V~L~V~R~~~  261 (774)
                      +..|.|+|.|.+.
T Consensus       103 g~~v~l~v~R~~~  115 (117)
T 2byg_A          103 SEVVYLKVGKPTT  115 (117)
T ss_dssp             CSEEEEEEEEEEE
T ss_pred             CCeEEEEEEeCCc
Confidence            9999999998754

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.24  E-value=2.7e-11  Score=105.93  Aligned_cols=83  Identities=28%  Similarity=0.426  Sum_probs=72.4

Q ss_pred             EEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEE
Q psy4897         176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELE  255 (774)
Q Consensus       176 r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~  255 (774)
                      ..+++.  ...+|||.+.++.+...+++|..|.+++||+++| |++||+|++|||+++.++++.+++.+++..++.+.|+
T Consensus         5 ~~v~~~--~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~   81 (89)
T 2q3g_A            5 FKVVLE--GPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLG   81 (89)
T ss_dssp             EEEEEE--SSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEEE
T ss_pred             EEEEEc--CCCcccEEEECcCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEE
Confidence            344444  4588999999876666789999999999999998 9999999999999999999999999999888899999


Q ss_pred             EEEecc
Q psy4897         256 VKYLRE  261 (774)
Q Consensus       256 V~R~~~  261 (774)
                      |.|...
T Consensus        82 v~R~~~   87 (89)
T 2q3g_A           82 LSRAIT   87 (89)
T ss_dssp             EEEECC
T ss_pred             EEeCCC
Confidence            988653

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=9.1e-11  Score=108.56  Aligned_cols=88  Identities=35%  Similarity=0.518  Sum_probs=78.7

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCCC-----CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR  247 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~~-----~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~  247 (774)
                      ...+.|.|.+.. .+|||.+.++.+.     ..+++|..|.+++||+++|.|++||+|++|||++|.++++.+++.+++.
T Consensus        16 ~~~~~v~l~r~~-~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~   94 (120)
T 2eno_A           16 VTEEEINLTRGP-SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN   94 (120)
T ss_dssp             EEEEEEEEECCS-SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHH
T ss_pred             CceEEEEEEECC-CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            357788888864 8999999987653     5689999999999999998899999999999999999999999999998


Q ss_pred             cCcceEEEEEEecc
Q psy4897         248 AGKLVELEVKYLRE  261 (774)
Q Consensus       248 ~g~~V~L~V~R~~~  261 (774)
                      .++.+.|+|.|...
T Consensus        95 ~g~~v~l~v~R~~~  108 (120)
T 2eno_A           95 AGYAVSLRVQHRLQ  108 (120)
T ss_dssp             HCSEEEEEEEEEEE
T ss_pred             CCCeEEEEEEeCCc
Confidence            88999999998765

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.23  E-value=1.5e-10  Score=107.64  Aligned_cols=89  Identities=26%  Similarity=0.320  Sum_probs=78.4

Q ss_pred             cccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--c
Q psy4897         171 VENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--A  248 (774)
Q Consensus       171 ~~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~  248 (774)
                      ...+.+.+.+.+. ..+|||.+.++.+...+++|..|.+++||+++|.|++||+|++|||++|.++++++++++|+.  .
T Consensus        16 ~~~~~~~v~l~~~-~~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~   94 (123)
T 1ueq_A           16 LKGTFLSTTLKKS-NMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPI   94 (123)
T ss_dssp             CCSEEEEEEEECC-TTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCT
T ss_pred             CCCcEEEEEEEeC-CCceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            3445677888875 678999999877667789999999999999998899999999999999999999999999998  5


Q ss_pred             CcceEEEEEEec
Q psy4897         249 GKLVELEVKYLR  260 (774)
Q Consensus       249 g~~V~L~V~R~~  260 (774)
                      ++.+.|+|.|..
T Consensus        95 g~~v~l~v~R~~  106 (123)
T 1ueq_A           95 GQSVNLVLCRGY  106 (123)
T ss_dssp             TCEEEEEEEESC
T ss_pred             CCeEEEEEEeCC
Confidence            789999998864

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.23  E-value=6.1e-11  Score=108.13  Aligned_cols=85  Identities=29%  Similarity=0.396  Sum_probs=75.6

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCC-CCCCEEEEECCEecCCCCHHHHHHHHHhc-Cce
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQL-YVGDAILSVNGEDLREATHDEAVKALKRA-GKV   97 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~L-qvGD~ILsVNG~~V~~~sh~eaV~lLk~a-g~~   97 (774)
                      ++++|.+.+....+|||++.++.+ ..+++|..|.++|||+++| | ++||+|++|||+++.++++.++..+++.. ++.
T Consensus         1 n~~~v~l~~~~~~glG~~~~~~~~-~~~~~V~~v~~~spA~~aG-ll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~   78 (112)
T 1qau_A            1 NVISVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSG-LIQAGDIILAVNDRPLVDLSYDSALEVLRGIASET   78 (112)
T ss_dssp             CEEEEEEECBTTTBTSEEEEECSS-SSCEEEEEECTTSHHHHHT-CCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSS
T ss_pred             CEEEEEEEcCCCCceeEEEEecCC-CCCEEEEEeCCCChHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCc
Confidence            367899988888999999997653 4589999999999999998 7 99999999999999999999999999874 688


Q ss_pred             EEEEeeecc
Q psy4897          98 VELEVGVGY  106 (774)
Q Consensus        98 V~L~V~R~~  106 (774)
                      +.|.|.|++
T Consensus        79 v~l~v~R~g   87 (112)
T 1qau_A           79 HVVLILRGP   87 (112)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEeCC
Confidence            999999875

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.23  E-value=2.2e-11  Score=112.61  Aligned_cols=87  Identities=39%  Similarity=0.576  Sum_probs=76.8

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC---CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK  250 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~---~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~  250 (774)
                      +.+.+.|.+.. .+|||++.++.+.   ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++..++
T Consensus        25 ~~~~v~L~k~~-~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~  103 (117)
T 2fne_A           25 QCKSITLERGP-DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKG  103 (117)
T ss_dssp             EEEEEEECCBT-TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             ccEEEEEEeCC-CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            57889998864 7899999986432   3579999999999999998899999999999999999999999999999888


Q ss_pred             ceEEEEEEecc
Q psy4897         251 LVELEVKYLRE  261 (774)
Q Consensus       251 ~V~L~V~R~~~  261 (774)
                      .|.|+|.|.++
T Consensus       104 ~v~l~v~R~g~  114 (117)
T 2fne_A          104 TVTLMVLSSDE  114 (117)
T ss_dssp             SEEEEEEECSC
T ss_pred             eEEEEEEeCCc
Confidence            89999998654

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.23  E-value=3.9e-11  Score=113.33  Aligned_cols=87  Identities=20%  Similarity=0.431  Sum_probs=77.0

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCCCC------------CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHH
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKENK------------MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE  240 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~~~------------~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e  240 (774)
                      .+.+.+++.+....+|||++.++....            .+++|..|.+++||+++| |++||+|++|||++|.++++++
T Consensus        26 ~~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~  104 (132)
T 3l4f_D           26 IKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQ  104 (132)
T ss_dssp             CCCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSCHHH
T ss_pred             CCCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHH
Confidence            357789999877789999999875421            269999999999999998 9999999999999999999999


Q ss_pred             HHHHHHHcCcceEEEEEEec
Q psy4897         241 AVKALKRAGKLVELEVKYLR  260 (774)
Q Consensus       241 ~v~~Lk~~g~~V~L~V~R~~  260 (774)
                      ++.+|+..++.+.|+|.+..
T Consensus       105 ~~~~l~~~g~~v~l~v~~~~  124 (132)
T 3l4f_D          105 VVNMIRQGGNTLMVKVVMVT  124 (132)
T ss_dssp             HHHHHHHTTTEEEEEEECCC
T ss_pred             HHHHHHcCCCEEEEEEEECC
Confidence            99999999999999998654

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.23  E-value=4.8e-11  Score=107.73  Aligned_cols=88  Identities=40%  Similarity=0.566  Sum_probs=76.7

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC-----CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA  248 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~-----~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~  248 (774)
                      +.+.|++.+. ..+|||++.++.+.     ..+++|..|.++|||+++|+|++||+|++|||+++.+.++.+++..++..
T Consensus         3 ~~~~v~l~k~-~~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   81 (105)
T 2awx_A            3 KIMEIKLIKG-PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNT   81 (105)
T ss_dssp             CEEEEEEECB-TTBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSC
T ss_pred             eEEEEEEEEC-CCCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            4677888886 47999999987543     35899999999999999988999999999999999999999999999988


Q ss_pred             CcceEEEEEEeccc
Q psy4897         249 GKLVELEVKYLREV  262 (774)
Q Consensus       249 g~~V~L~V~R~~~~  262 (774)
                      ++.+.|+|.|....
T Consensus        82 ~~~v~l~v~R~~~~   95 (105)
T 2awx_A           82 SDFVYLKVAKPTSM   95 (105)
T ss_dssp             CSEEEEEEECCCC-
T ss_pred             CCeEEEEEEcCCCC
Confidence            89999999886543

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.23  E-value=4.3e-11  Score=106.10  Aligned_cols=87  Identities=22%  Similarity=0.416  Sum_probs=76.1

Q ss_pred             ceEEEEEeccCCCCcceEEeC--CCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcc
Q psy4897         174 QKRIIRVKKSENNGLGISIKG--GKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKL  251 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~g--g~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~  251 (774)
                      ++|++.+.+. ..+|||.+.+  +.+...+++|..|.+++||+++| |++||+|++|||+++.+++++++..+++..++.
T Consensus         3 ~~r~v~l~k~-~~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   80 (96)
T 2v90_A            3 KPRCLHLEKG-PQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQGSC   80 (96)
T ss_dssp             CCEEEEEECB-TTBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTTE
T ss_pred             CCEEEEEEeC-CCcccEEEEeccCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            4788999886 4699999987  33334579999999999999998 999999999999999999999999999988899


Q ss_pred             eEEEEEEeccc
Q psy4897         252 VELEVKYLREV  262 (774)
Q Consensus       252 V~L~V~R~~~~  262 (774)
                      +.|+|.|....
T Consensus        81 v~l~v~r~~~~   91 (96)
T 2v90_A           81 VSLTVVDPEAD   91 (96)
T ss_dssp             EEEEEECCCTT
T ss_pred             EEEEEECCCCc
Confidence            99999987553

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.23  E-value=3.3e-11  Score=109.38  Aligned_cols=82  Identities=40%  Similarity=0.559  Sum_probs=71.3

Q ss_pred             eccCCCCcceEEeCCCCCC-----CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEE
Q psy4897         181 KKSENNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELE  255 (774)
Q Consensus       181 ~k~~~~~LGfsi~gg~~~~-----~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~  255 (774)
                      .+....+|||++.+|.+..     .+++|..|.+++||+++|.|++||+|++|||++|.++++++++.+++..++.+.|+
T Consensus         8 ~~~~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~   87 (106)
T 4amh_A            8 VPRGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLK   87 (106)
T ss_dssp             ----CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEE
T ss_pred             CCCCCCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEE
Confidence            3446789999999987653     38999999999999999889999999999999999999999999999988999999


Q ss_pred             EEEeccc
Q psy4897         256 VKYLREV  262 (774)
Q Consensus       256 V~R~~~~  262 (774)
                      |.|....
T Consensus        88 v~R~~~~   94 (106)
T 4amh_A           88 VAKPGSG   94 (106)
T ss_dssp             EECCSSS
T ss_pred             EEeCCCC
Confidence            9987643

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=99.23  E-value=1.8e-10  Score=132.16  Aligned_cols=184  Identities=13%  Similarity=0.135  Sum_probs=110.8

Q ss_pred             CcccEEEEc----------cCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCH----------HHHHHHH
Q psy4897          32 NGLGISIKG----------GKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH----------DEAVKAL   91 (774)
Q Consensus        32 ~gLGfsI~G----------G~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh----------~eaV~lL   91 (774)
                      ..||+++..          |.+...|++|.+|.|+|||++ + |++||+|++|||+.|.+...          ......-
T Consensus       253 ~~LGv~~~~~~~~~~~~~~~l~~~~Gv~V~~V~~~spA~~-a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~  330 (539)
T 4fln_A          253 PCLGVLLQKLENPALRECLKVPTNEGVLVRRVEPTSDASK-V-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQ  330 (539)
T ss_dssp             CBCCEEEEECCCHHHHHHHTCSSSBCEEEEEECTTSGGGG-T-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHT
T ss_pred             eecceEEEecCCHHHHHhcCCCCcCceeeecccCCChHHh-C-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHc
Confidence            457777653          223346999999999999987 4 99999999999999976543          2233344


Q ss_pred             HhcCceEEEEeeecccccceeeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCcc
Q psy4897          92 KRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSV  171 (774)
Q Consensus        92 k~ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~  171 (774)
                      ++.|+.|+|+|.|++.. ..+           ..++..............          .|.              ...
T Consensus       331 ~~~Gd~v~l~v~R~Gk~-~~v-----------~Vtl~~~~~~~~~~~~~~----------~p~--------------~~~  374 (539)
T 4fln_A          331 KFAGDIAEIGIIRAGEH-KKV-----------QVVLRPRVHLVPYHIDGG----------QPS--------------YII  374 (539)
T ss_dssp             SCTTCEEEEEEEETTEE-EEE-----------EEECBCCCCSSCSCTTSS----------CCC--------------CCC
T ss_pred             CCCCCEEEEEEEECCEE-EEE-----------EEEEccCccccccccccC----------CCc--------------ccc
Confidence            56799999999998632 122           222221110000000000          000              000


Q ss_pred             ccceEEEEEecc-----CCCCcceEEe-------CCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHH
Q psy4897         172 ENQKRIIRVKKS-----ENNGLGISIK-------GGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD  239 (774)
Q Consensus       172 ~~~~r~V~L~k~-----~~~~LGfsi~-------gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~  239 (774)
                      ........+...     ....+++.+.       .......+++|+.|.++++|...| ++.||+|++|||++|.+  ..
T Consensus       375 ~~Gl~f~~Lt~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gVvvs~V~~~s~a~~~g-~~~gdiI~~vNg~~V~s--~~  451 (539)
T 4fln_A          375 VAGLVFTPLSEPLIEEECEDTIGLKLLTKARYSVARFRGEQIVILSQVLANEVNIGYE-DMNNQQVLKFNGIPIRN--IH  451 (539)
T ss_dssp             STTEEEEECCHHHHTTSCSSSSCHHHHHHHHHCCCSSTTCCCEEEEEECCCGGGTTCS-SCCSEEEEEETTEECCS--HH
T ss_pred             ccceEEeeCCHHHHHhhcccccCceeeehhhhhhhccCCceEEEEEEecCCchhhhcC-CCCCCEEEeECCEEcCC--HH
Confidence            011111112111     0111111110       011124579999999999999997 99999999999999988  89


Q ss_pred             HHHHHHHHcC-cceEEEE
Q psy4897         240 EAVKALKRAG-KLVELEV  256 (774)
Q Consensus       240 e~v~~Lk~~g-~~V~L~V  256 (774)
                      ++.++|+++. +-+.|.+
T Consensus       452 ~l~~~l~~~k~~~l~~~~  469 (539)
T 4fln_A          452 HLAHLIDMCKDKYLVFEF  469 (539)
T ss_dssp             HHHHHHHTCCSSEEEEEE
T ss_pred             HHHHHHHHcCCCeEEEEE
Confidence            9999999854 4444443

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.23  E-value=3.9e-11  Score=107.72  Aligned_cols=92  Identities=41%  Similarity=0.583  Sum_probs=79.7

Q ss_pred             ccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcc
Q psy4897         172 ENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKL  251 (774)
Q Consensus       172 ~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~  251 (774)
                      ....+.+.+.+. ..+|||.+.++.+ ..+++|..|.++|||+++|.|++||+|++|||+++.++++.+++..++..++.
T Consensus         9 ~~~~~~v~l~k~-~~glG~~~~~~~~-~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   86 (104)
T 3i4w_A            9 PREPRRIVIHRG-STGLGFNIVGGEX-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQT   86 (104)
T ss_dssp             CSSCEEEEEECB-TTBTSEEEEECC--CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSE
T ss_pred             CCccEEEEEEeC-CCccCEEEECCCC-CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            345788999886 5789999988744 45899999999999999988999999999999999999999999999999999


Q ss_pred             eEEEEEEecccccc
Q psy4897         252 VELEVKYLREVTPY  265 (774)
Q Consensus       252 V~L~V~R~~~~~~~  265 (774)
                      +.|+|.|.++.+..
T Consensus        87 v~l~v~r~~~~~~~  100 (104)
T 3i4w_A           87 VTIIAQYKPEEYSR  100 (104)
T ss_dssp             EEEEEEECHHHHHH
T ss_pred             EEEEEEECcchhhh
Confidence            99999998665443

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.22  E-value=9.9e-11  Score=103.57  Aligned_cols=87  Identities=23%  Similarity=0.374  Sum_probs=76.2

Q ss_pred             ceEEEEEecc-CCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcce
Q psy4897         174 QKRIIRVKKS-ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLV  252 (774)
Q Consensus       174 ~~r~V~L~k~-~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V  252 (774)
                      +...+.+.+. ...+|||.+.++.+ ..+++|..|.++|||+++|.|++||+|++|||+++.+.++.+++..++..++.+
T Consensus         3 ~~~~v~l~k~~~~~~lG~~~~~~~~-~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v   81 (95)
T 2vwr_A            3 EILQVALHKRDSGEQLGIKLVRRTD-EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERV   81 (95)
T ss_dssp             EEEEEEEECSSTTCCCCEEEEECSS-SCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEE
T ss_pred             EEEEEEEEECCCCCcccEEEEeccC-CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence            3567888875 45789999987644 468999999999999999889999999999999999999999999999999999


Q ss_pred             EEEEEEecc
Q psy4897         253 ELEVKYLRE  261 (774)
Q Consensus       253 ~L~V~R~~~  261 (774)
                      .|+|.|.+.
T Consensus        82 ~l~v~R~~~   90 (95)
T 2vwr_A           82 NLTIARPGK   90 (95)
T ss_dssp             EEEEEEESC
T ss_pred             EEEEEcCCc
Confidence            999998764

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.22  E-value=3.2e-11  Score=111.38  Aligned_cols=88  Identities=34%  Similarity=0.561  Sum_probs=77.5

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhc-cCCCCCCEEEEECCeecCCCCHHHHHHHHHHcC--
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQT-EQLYVGDAILSVNGEDLREATHDEAVKALKRAG--  249 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~a-G~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g--  249 (774)
                      ...+++.+.+...++|||.+.++.+...+++|..|.+++||+++ |+|++||+|++|||++|.++++.+++.+++..+  
T Consensus        14 ~~~~~v~l~k~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~   93 (119)
T 2cs5_A           14 DNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCER   93 (119)
T ss_dssp             SCCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHC
T ss_pred             CCeEEEEEEeCCCCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccc
Confidence            45788999997777899999988766678999999999999999 349999999999999999999999999999864  


Q ss_pred             --cceEEEEEEec
Q psy4897         250 --KLVELEVKYLR  260 (774)
Q Consensus       250 --~~V~L~V~R~~  260 (774)
                        ..+.|+|.|..
T Consensus        94 ~~~~v~l~v~R~~  106 (119)
T 2cs5_A           94 HSGELMLLVRPNA  106 (119)
T ss_dssp             CSSCEEEEEECCC
T ss_pred             CCCEEEEEEEccc
Confidence              48999998753

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.22  E-value=6.3e-11  Score=103.78  Aligned_cols=84  Identities=23%  Similarity=0.349  Sum_probs=74.9

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      ++|++.+.+. ..++||.+.++.+ ..+++|..|.+++||+++| |++||+|++|||+++.+++++++.++|+..++.+.
T Consensus         4 ~~r~v~l~k~-~~g~G~~~~~~~~-~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~   80 (90)
T 2he4_A            4 RPRLCHLRKG-PQGYGFNLHSDKS-RPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR   80 (90)
T ss_dssp             CCEEEEEECB-TTBCCEEEEECSS-SSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEE
T ss_pred             CcEEEEEEEC-CCCccEEEEccCC-CCCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEE
Confidence            5788999886 4689999987643 4589999999999999998 99999999999999999999999999998889999


Q ss_pred             EEEEEec
Q psy4897         254 LEVKYLR  260 (774)
Q Consensus       254 L~V~R~~  260 (774)
                      |+|.|..
T Consensus        81 l~v~r~~   87 (90)
T 2he4_A           81 LLVVGPS   87 (90)
T ss_dssp             EEEECCC
T ss_pred             EEEEccC
Confidence            9998754

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.22  E-value=4.1e-11  Score=108.36  Aligned_cols=85  Identities=35%  Similarity=0.556  Sum_probs=74.4

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCCCCCe-EEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-----c
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKENKMPI-LISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-----A  248 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~~~pi-~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-----~  248 (774)
                      .+.+.+.+ ...+|||++.++.+...++ +|..|.+++||+++|+|++||+|++|||+++.+++|++++++|+.     .
T Consensus         7 ~~~v~l~k-~~~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~   85 (103)
T 1ufx_A            7 GTLVRVKK-SAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKD   85 (103)
T ss_dssp             SEEEEEEC-CSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSS
T ss_pred             eEEEEEEc-CCCcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCC
Confidence            57788866 4689999999987766665 999999999999998899999999999999999999999999998     4


Q ss_pred             CcceEEEEEEec
Q psy4897         249 GKLVELEVKYLR  260 (774)
Q Consensus       249 g~~V~L~V~R~~  260 (774)
                      ++.+.|+|.|..
T Consensus        86 ~~~i~l~v~r~~   97 (103)
T 1ufx_A           86 RDYIDFLVTEFN   97 (103)
T ss_dssp             CSEEEEEECCCC
T ss_pred             CCeEEEEEEEcc
Confidence            677888887654

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.21  E-value=7.9e-11  Score=103.78  Aligned_cols=86  Identities=37%  Similarity=0.554  Sum_probs=75.0

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC-----CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA  248 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~-----~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~  248 (774)
                      ..+.++|.+. ..+|||++.++.+.     ..+++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++..
T Consensus         3 ~~~~v~l~k~-~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   81 (94)
T 2fe5_A            3 TIMEVNLLKG-PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT   81 (94)
T ss_dssp             CEEEEEEECC-TTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC
T ss_pred             EEEEEEEEEC-CCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3677888886 67899999987542     35899999999999999977999999999999999999999999999988


Q ss_pred             CcceEEEEEEec
Q psy4897         249 GKLVELEVKYLR  260 (774)
Q Consensus       249 g~~V~L~V~R~~  260 (774)
                      ++.+.|+|.|.+
T Consensus        82 ~~~v~l~v~R~g   93 (94)
T 2fe5_A           82 SDMVYLKVAKPG   93 (94)
T ss_dssp             CSEEEEEEECCC
T ss_pred             CCeEEEEEEcCC
Confidence            889999998753

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.21  E-value=7.5e-11  Score=104.05  Aligned_cols=84  Identities=27%  Similarity=0.450  Sum_probs=74.7

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      ..+.+.+.+. ..+|||.+.++ +...+++|.+|.+++||+++|.|++||+|++|||+++.+.++++++++|+..++.++
T Consensus         4 ~~r~v~l~k~-~~~lG~~i~~~-~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~   81 (93)
T 3o46_A            4 SVKIIRLVKN-REPLGATIKKD-EQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAIT   81 (93)
T ss_dssp             CCEEEEEEES-SSCCCEEEEEC-TTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEEE
T ss_pred             cEEEEEEEeC-CCCccEEEEec-CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            4678889886 46999999875 335789999999999999998899999999999999999999999999999888999


Q ss_pred             EEEEEe
Q psy4897         254 LEVKYL  259 (774)
Q Consensus       254 L~V~R~  259 (774)
                      |+|.+.
T Consensus        82 l~v~~~   87 (93)
T 3o46_A           82 FKIIPG   87 (93)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            998764

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.21  E-value=1e-10  Score=103.51  Aligned_cols=87  Identities=31%  Similarity=0.484  Sum_probs=76.4

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC---CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK  250 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~---~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~  250 (774)
                      ..+.+.+.+. ..+|||++.++.+.   ..+++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++..++
T Consensus         5 ~~~~v~l~k~-~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~   83 (96)
T 1d5g_A            5 DIFEVELAKN-DNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQ   83 (96)
T ss_dssp             CEEEEEEECS-SSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCCS
T ss_pred             CEEEEEEEeC-CCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4678888875 58999999987542   3589999999999999997799999999999999999999999999998889


Q ss_pred             ceEEEEEEecc
Q psy4897         251 LVELEVKYLRE  261 (774)
Q Consensus       251 ~V~L~V~R~~~  261 (774)
                      .+.|+|.|...
T Consensus        84 ~v~l~v~R~~~   94 (96)
T 1d5g_A           84 VVHLLLEKGQS   94 (96)
T ss_dssp             EEEEEEECCSC
T ss_pred             eEEEEEEcCCC
Confidence            99999987543

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.21  E-value=3.8e-11  Score=112.56  Aligned_cols=87  Identities=31%  Similarity=0.490  Sum_probs=74.2

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCC----CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc--
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKEN----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--  248 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~----~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~--  248 (774)
                      ...+.+.+....+|||.+.++.+.    ..+++|..|.+++||+++|+|++||+|++|||+++.+++|++++++|+..  
T Consensus        26 ~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~  105 (127)
T 1wg6_A           26 TLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMS  105 (127)
T ss_dssp             EEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhc
Confidence            344555545678999999886532    35899999999999999988999999999999999999999999999975  


Q ss_pred             -----CcceEEEEEEecc
Q psy4897         249 -----GKLVELEVKYLRE  261 (774)
Q Consensus       249 -----g~~V~L~V~R~~~  261 (774)
                           +..|.|+|.|...
T Consensus       106 ~~g~~~~~v~l~v~R~~~  123 (127)
T 1wg6_A          106 MEGNIRGMIQLVILRRSG  123 (127)
T ss_dssp             HHHHHTCEEEEEEEECSC
T ss_pred             cccCCCCEEEEEEEeCCC
Confidence                 7899999998654

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.21  E-value=1.2e-10  Score=107.52  Aligned_cols=89  Identities=27%  Similarity=0.441  Sum_probs=75.8

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCCC-CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcc
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKEN-KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKL  251 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~~-~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~  251 (774)
                      ...+.+.+.+....+|||.+.++.+. ..+++|..|.+++||+++|+|++||+|++|||++|.++++.+++.+++..+..
T Consensus        14 ~~~~~v~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~   93 (119)
T 1x6d_A           14 DGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREP   93 (119)
T ss_dssp             TTEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSS
T ss_pred             CCeEEEEEEeCCCCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            34777888887788999999987653 46899999999999999988999999999999999999999999999986554


Q ss_pred             -eEEEEEEecc
Q psy4897         252 -VELEVKYLRE  261 (774)
Q Consensus       252 -V~L~V~R~~~  261 (774)
                       +.++|.|...
T Consensus        94 ~~~l~v~R~~~  104 (119)
T 1x6d_A           94 RQAVIVTRKLT  104 (119)
T ss_dssp             SEEEEEEECCC
T ss_pred             eEEEEEEcCCC
Confidence             4577776554

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=99.21  E-value=3.6e-11  Score=119.87  Aligned_cols=72  Identities=31%  Similarity=0.400  Sum_probs=67.1

Q ss_pred             CCcccEEEEccCC--------CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEe
Q psy4897          31 NNGLGISIKGGKE--------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEV  102 (774)
Q Consensus        31 ~~gLGfsI~GG~e--------~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V  102 (774)
                      +.+|||+|.||.+        ...|++|.+|.++|||++ | |++||+|++|||++|.+++|.+++.+++.++..|.|.|
T Consensus         1 ~~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v   78 (195)
T 2qbw_A            1 SPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELII   78 (195)
T ss_dssp             CCCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEE
T ss_pred             CCcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            4789999999874        346999999999999999 7 99999999999999999999999999999999999999


Q ss_pred             ee
Q psy4897         103 GV  104 (774)
Q Consensus       103 ~R  104 (774)
                      .|
T Consensus        79 ~r   80 (195)
T 2qbw_A           79 VR   80 (195)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.21  E-value=4.5e-11  Score=110.03  Aligned_cols=83  Identities=28%  Similarity=0.324  Sum_probs=73.0

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE   99 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~   99 (774)
                      +++.|.+.+. ..+|||++.++.+  .+++|..|.+++||+++| |++||+|++|||++|.++++.+++..++..++.|.
T Consensus        19 ~~~~v~l~~~-~~~lG~~~~~~~~--~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~   94 (117)
T 1uit_A           19 EPRHVKVQKG-SEPLGISIVSGEK--GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTIT   94 (117)
T ss_dssp             CCEEEEEECS-SCCCCEEEEECTT--SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEE
T ss_pred             CCEEEEEEeC-CCCccEEEEccCC--CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            4457787654 5899999998754  489999999999999998 99999999999999999999999988888899999


Q ss_pred             EEeeecc
Q psy4897         100 LEVGVGY  106 (774)
Q Consensus       100 L~V~R~~  106 (774)
                      |+|.|+.
T Consensus        95 l~v~r~~  101 (117)
T 1uit_A           95 ILAQYNP  101 (117)
T ss_dssp             EEECCCS
T ss_pred             EEEEECC
Confidence            9998865

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.21  E-value=6.3e-11  Score=110.72  Aligned_cols=77  Identities=26%  Similarity=0.444  Sum_probs=68.5

Q ss_pred             EeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceEEEEeee
Q psy4897          27 KYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVVELEVGV  104 (774)
Q Consensus        27 ~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V~L~V~R  104 (774)
                      ..+++.+|||++.++.+  .|++|..|.|+|||+++| |++||+|++|||++|.++++.+++.++++  .++.|.|+|.|
T Consensus        34 ~~~~~~~lG~~l~~~~~--~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R  110 (124)
T 3tsv_A           34 KFRKGDSVGLRLAGGND--VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQK  110 (124)
T ss_dssp             EEECSSCCCEEEEECTT--SCEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             EcCCCCceeEEEecCCC--CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence            34556899999998754  689999999999999998 99999999999999999999999998884  78899999988


Q ss_pred             cc
Q psy4897         105 GY  106 (774)
Q Consensus       105 ~~  106 (774)
                      +.
T Consensus       111 ~~  112 (124)
T 3tsv_A          111 KK  112 (124)
T ss_dssp             CH
T ss_pred             CC
Confidence            65

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.21  E-value=1.2e-10  Score=108.89  Aligned_cols=86  Identities=35%  Similarity=0.453  Sum_probs=74.2

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV   98 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V   98 (774)
                      ...+++.+...+..+|||++.++.+...+++|..|.++|||+++| |++||+|++|||++|.++++.+++..++. +..+
T Consensus        19 g~~~~v~v~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~v   96 (128)
T 1uf1_A           19 GDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKS-SRHL   96 (128)
T ss_dssp             SSEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTT-CSEE
T ss_pred             CcEEEEEEEECCCCccCEEEECcccCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHhc-CCeE
Confidence            355667777666689999999876666799999999999999998 99999999999999999999888887776 4689


Q ss_pred             EEEeeecc
Q psy4897          99 ELEVGVGY  106 (774)
Q Consensus        99 ~L~V~R~~  106 (774)
                      .|+|.|+.
T Consensus        97 ~l~v~R~g  104 (128)
T 1uf1_A           97 ILTVKDVG  104 (128)
T ss_dssp             EEEEECCS
T ss_pred             EEEEEECC
Confidence            99998865

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.21  E-value=8.5e-11  Score=108.28  Aligned_cols=87  Identities=31%  Similarity=0.565  Sum_probs=76.9

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCCC------CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK  246 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~~------~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk  246 (774)
                      .+.+.+.+.+....+|||.+.++.+.      ..+++|..|.+++||+ +| |++||+|++|||++|.++++.+++.+++
T Consensus        13 ~~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~g-L~~GD~I~~Vng~~v~~~~~~~~~~~l~   90 (117)
T 2csj_A           13 WEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQLR   90 (117)
T ss_dssp             EEEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHHH
T ss_pred             ceEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-cc-CCCCCEEEEECCEECCCcCHHHHHHHHh
Confidence            35778888887668999999987653      4679999999999996 65 9999999999999999999999999999


Q ss_pred             HcCcceEEEEEEecc
Q psy4897         247 RAGKLVELEVKYLRE  261 (774)
Q Consensus       247 ~~g~~V~L~V~R~~~  261 (774)
                      ..++.+.|+|.|.+.
T Consensus        91 ~~~~~v~l~v~R~~~  105 (117)
T 2csj_A           91 KSGKIAAIVVKRPRK  105 (117)
T ss_dssp             HSCSEEEEEEEEEEE
T ss_pred             cCCCeEEEEEEECCc
Confidence            999999999998655

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.21  E-value=1.4e-10  Score=106.26  Aligned_cols=85  Identities=25%  Similarity=0.410  Sum_probs=75.5

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCC-CCCCEEEEECCeecCCCCHHHHHHHHHHcCcc
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQL-YVGDAILSVNGEDLREATHDEAVKALKRAGKL  251 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L-~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~  251 (774)
                      ...+.+.+.+....+|||.+.+.   ..+++|..|.+++||+++| | ++||+|++|||++|.++++++++++|+..++.
T Consensus        24 ~~~~~v~l~k~~~~~lG~~i~~~---~~gv~V~~V~~~spA~~aG-ll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~   99 (113)
T 1va8_A           24 ETVKIVRIEKARDIPLGATVRNE---MDSVIISRIVKGGAAEKSG-LLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGT   99 (113)
T ss_dssp             EECEEEEEEECTTCCCCEEEEEC---SSSEEEEEECTTSHHHHHT-CCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEE
T ss_pred             CceEEEEEEeCCCCceeEEEEeC---CCCEEEEEeCCCCHHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            35788999997666999999865   4689999999999999998 6 99999999999999999999999999998889


Q ss_pred             eEEEEEEecc
Q psy4897         252 VELEVKYLRE  261 (774)
Q Consensus       252 V~L~V~R~~~  261 (774)
                      +.|+|.|...
T Consensus       100 v~l~v~r~~~  109 (113)
T 1va8_A          100 LTFVLIPSSG  109 (113)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEEECCc
Confidence            9999987654

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.21  E-value=1.1e-10  Score=103.67  Aligned_cols=88  Identities=38%  Similarity=0.576  Sum_probs=77.1

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCC-CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcce
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENK-MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLV  252 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~-~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V  252 (774)
                      +.+.+.+.+. ..+|||.+.++.+.. .+++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++..++.+
T Consensus         4 ~~~~v~l~~~-~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v   82 (98)
T 2opg_A            4 CETTIEISKG-RTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRV   82 (98)
T ss_dssp             EEEEEEEECB-TTBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred             CEEEEEEEEC-CCcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            4678888875 678999999875543 58999999999999999779999999999999999999999999999888999


Q ss_pred             EEEEEEeccc
Q psy4897         253 ELEVKYLREV  262 (774)
Q Consensus       253 ~L~V~R~~~~  262 (774)
                      .|+|.|.+..
T Consensus        83 ~l~v~R~~~~   92 (98)
T 2opg_A           83 RLTLYRDEAP   92 (98)
T ss_dssp             EEEEEECSSC
T ss_pred             EEEEEcCCCC
Confidence            9999886553

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.21  E-value=4.2e-11  Score=103.57  Aligned_cols=82  Identities=28%  Similarity=0.446  Sum_probs=71.6

Q ss_pred             EEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEE
Q psy4897         176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELE  255 (774)
Q Consensus       176 r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~  255 (774)
                      ..+++.  ...+|||.+.++.+...+++|..|.+++||+++| |++||+|++|||+++.++++.+++..++..++.+.|+
T Consensus         3 ~~v~l~--~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~   79 (85)
T 1rgw_A            3 YSVTLT--GPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLT   79 (85)
T ss_dssp             EEEEEC--CSSCCCEEECCCGGGTSCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEE
T ss_pred             EEEEEe--CCCccCEEEEeccCCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEE
Confidence            345553  3578999999887767789999999999999997 9999999999999999999999999998888889999


Q ss_pred             EEEec
Q psy4897         256 VKYLR  260 (774)
Q Consensus       256 V~R~~  260 (774)
                      |.|.+
T Consensus        80 v~R~~   84 (85)
T 1rgw_A           80 LQKSK   84 (85)
T ss_dssp             EESCC
T ss_pred             EEeCC
Confidence            98753

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.21  E-value=6.4e-11  Score=107.64  Aligned_cols=86  Identities=29%  Similarity=0.363  Sum_probs=75.4

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCC----CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKE----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA  248 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~----~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~  248 (774)
                      ...+.+.+.+. ..+|||.+.++.+    ...+++|..|.+++||+++|.|++||+|++|||+++.++++++++++|+..
T Consensus        14 ~~~~~v~l~k~-~~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   92 (108)
T 2d92_A           14 PEVKIVELVKD-CKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAV   92 (108)
T ss_dssp             SSCEEEEEEEC-SSCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHS
T ss_pred             CceEEEEEEEC-CCccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            35688999886 5799999988654    346799999999999999988999999999999999999999999999994


Q ss_pred             -CcceEEEEEEe
Q psy4897         249 -GKLVELEVKYL  259 (774)
Q Consensus       249 -g~~V~L~V~R~  259 (774)
                       ++.|.|+|.|.
T Consensus        93 ~~~~v~l~v~R~  104 (108)
T 2d92_A           93 PPGLVHLGICSG  104 (108)
T ss_dssp             CSEEEEEEEECC
T ss_pred             CCCeEEEEEEcC
Confidence             67899999864

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.21  E-value=5.9e-11  Score=106.45  Aligned_cols=83  Identities=28%  Similarity=0.444  Sum_probs=74.4

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEE
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVEL  254 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L  254 (774)
                      ++.+.+.|....++|+.+....  ..+++|.+|.+++||+++|.|++||+|++|||++|.++++++++++|+..++.+.|
T Consensus        13 ~~~v~l~K~~~~~lG~~l~~~~--~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~L   90 (97)
T 2ejy_A           13 VRLIQFEKVTEEPMGICLKLNE--KQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISL   90 (97)
T ss_dssp             CEEEEEEECSSSCCSEEEEECT--TCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEEEE
T ss_pred             cEEEEEEeCCCCCeeEEEEeCC--CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            6889999988889999998642  35899999999999999988999999999999999998999999999998888999


Q ss_pred             EEEEe
Q psy4897         255 EVKYL  259 (774)
Q Consensus       255 ~V~R~  259 (774)
                      +|.+.
T Consensus        91 ~V~~~   95 (97)
T 2ejy_A           91 KVIPN   95 (97)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            88753

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.21  E-value=4.1e-11  Score=112.16  Aligned_cols=88  Identities=25%  Similarity=0.402  Sum_probs=77.7

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCCC---CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecC-CCCHHHHHHHHHHc
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR-EATHDEAVKALKRA  248 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~~---~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~-~~t~~e~v~~Lk~~  248 (774)
                      ...+.|.+.+....+|||.+.++.+.   ..+++|..|.+++||+++|.|++||+|++|||++|. ++++++++.+|+..
T Consensus        24 ~~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~  103 (128)
T 2db5_A           24 RQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQT  103 (128)
T ss_dssp             CEEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHC
T ss_pred             CceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcC
Confidence            35778889887668999999876543   248999999999999999889999999999999997 99999999999999


Q ss_pred             CcceEEEEEEec
Q psy4897         249 GKLVELEVKYLR  260 (774)
Q Consensus       249 g~~V~L~V~R~~  260 (774)
                      +..|.|+|.|..
T Consensus       104 ~~~v~l~v~r~~  115 (128)
T 2db5_A          104 TGSLRLIVAREP  115 (128)
T ss_dssp             CSEEEEEEEECC
T ss_pred             CCeEEEEEEcCC
Confidence            999999998864

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.20  E-value=4.9e-11  Score=103.93  Aligned_cols=83  Identities=25%  Similarity=0.409  Sum_probs=73.0

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEE
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVEL  254 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L  254 (774)
                      ...+.+.  ...+|||.+.++.+...+++|..|.+++||+++| |++||+|++|||+++.++++.++..+++..++.+.|
T Consensus         4 ~~~v~l~--~~~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l   80 (88)
T 2uzc_A            4 NYSVSLV--GPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNM   80 (88)
T ss_dssp             EEEEEEE--SSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEE
T ss_pred             EEEEEEc--CCCcccEEEECcCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence            4456662  4578999999877666789999999999999998 999999999999999999999999999988899999


Q ss_pred             EEEEec
Q psy4897         255 EVKYLR  260 (774)
Q Consensus       255 ~V~R~~  260 (774)
                      +|.|.+
T Consensus        81 ~v~R~g   86 (88)
T 2uzc_A           81 TLQRES   86 (88)
T ss_dssp             EEECCC
T ss_pred             EEEeCC
Confidence            998754

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.20  E-value=5.5e-11  Score=108.91  Aligned_cols=81  Identities=25%  Similarity=0.254  Sum_probs=70.5

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce-E
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV-V   98 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~-V   98 (774)
                      ..++|.+.+ ++.+|||.+.+.    .+++|..|.|+|||+++| |++||+|++|||++|.++++.+++.+++..+.. |
T Consensus        23 ~~r~v~l~k-~~~~~G~~l~~~----~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v   96 (109)
T 2vsv_A           23 MPRSIRFTA-EEGDLGFTLRGN----APVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEI   96 (109)
T ss_dssp             SCEEEEECC-GGGCCCEEEESS----SSCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCE
T ss_pred             CCEEEEEEe-CCCceeEEEeCC----CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeE
Confidence            456778855 679999999753    468999999999999998 999999999999999999999999999987664 9


Q ss_pred             EEEeeecc
Q psy4897          99 ELEVGVGY  106 (774)
Q Consensus        99 ~L~V~R~~  106 (774)
                      .|+|.|..
T Consensus        97 ~l~V~~~~  104 (109)
T 2vsv_A           97 EMKVVSLL  104 (109)
T ss_dssp             EEEEESCC
T ss_pred             EEEEEECC
Confidence            99998754

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.20  E-value=9.9e-11  Score=104.16  Aligned_cols=83  Identities=23%  Similarity=0.270  Sum_probs=69.6

Q ss_pred             cEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcC-ceEE
Q psy4897          21 FYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG-KVVE   99 (774)
Q Consensus        21 ~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag-~~V~   99 (774)
                      .+.+.+. ++..+|||++.++.+ ..+++|..|.++|||+++| |++||+|++|||+++.++++.++..+++... ..+.
T Consensus        10 ~~~~~l~-~~~~g~G~~~~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~   86 (98)
T 2jxo_A           10 PRLCTMK-KGPSGYGFNLHSDKS-KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKL   86 (98)
T ss_dssp             CEEEEEE-CTTTCCCEEEECCCS-SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEE
T ss_pred             cEEEEEE-eCCCcccEEEEecCC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEE
Confidence            3455654 456799999997753 3489999999999999998 9999999999999999999999999999864 4566


Q ss_pred             EEeeecc
Q psy4897         100 LEVGVGY  106 (774)
Q Consensus       100 L~V~R~~  106 (774)
                      |+|.|+.
T Consensus        87 l~v~R~g   93 (98)
T 2jxo_A           87 LVVDRET   93 (98)
T ss_dssp             EECCHHH
T ss_pred             EEEECCc
Confidence            8887764

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=2.7e-11  Score=111.79  Aligned_cols=93  Identities=15%  Similarity=0.139  Sum_probs=78.2

Q ss_pred             ccccccCCCCcEEEEEEeecCC--cccEEEEccCCCC-CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHH
Q psy4897          11 TEAFFFSSRDFYSENYKYTENN--GLGISIKGGKENK-MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA   87 (774)
Q Consensus        11 ~~~~~~~s~~~~~V~l~rk~~~--gLGfsI~GG~e~~-~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~ea   87 (774)
                      -+.+......++.+.+.+.+..  +|||+|.+..+.+ .+++|..|.++|||+++| |++||+|++|||++|.++++.++
T Consensus         6 ~~~~e~~~~~~~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~   84 (114)
T 2d8i_A            6 SGEIEICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSML   84 (114)
T ss_dssp             CCCCCSSCCEEEEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGCCHHHH
T ss_pred             ccceEeccCceEEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHH
Confidence            3445566778889999888774  7999999754433 589999999999999998 99999999999999999999999


Q ss_pred             HHHHHhcCceEEEEeeecc
Q psy4897          88 VKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        88 V~lLk~ag~~V~L~V~R~~  106 (774)
                      +.+++.  ..+.|+|.|..
T Consensus        85 ~~~l~~--~~v~l~v~R~p  101 (114)
T 2d8i_A           85 KDFLSQ--PSLGLLVRTYP  101 (114)
T ss_dssp             HHHHTS--SEEEEEEEECC
T ss_pred             HHHHhC--CcEEEEEEECC
Confidence            988875  48899998754

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.20  E-value=8.5e-11  Score=107.60  Aligned_cols=87  Identities=25%  Similarity=0.527  Sum_probs=77.0

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      +.+.+.+.+. ..+|||.+.++.+...+++|..|.+++||+++|.|++||+|++|||++|.++++.+++.+++..++.+.
T Consensus        24 ~~~~v~l~~~-~~glG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~  102 (112)
T 2r4h_A           24 DFYTVELERG-AKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVR  102 (112)
T ss_dssp             CEEEEEEECB-TTBTSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEE
T ss_pred             ceEEEEEEcC-CCccCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            4677888775 467999999876656799999999999999997799999999999999999999999999998889999


Q ss_pred             EEEEEecc
Q psy4897         254 LEVKYLRE  261 (774)
Q Consensus       254 L~V~R~~~  261 (774)
                      |+|.|.+.
T Consensus       103 l~v~R~~~  110 (112)
T 2r4h_A          103 LFLKRGET  110 (112)
T ss_dssp             EEEECCEE
T ss_pred             EEEEeCCc
Confidence            99987643

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=9.9e-12  Score=110.72  Aligned_cols=80  Identities=21%  Similarity=0.313  Sum_probs=70.8

Q ss_pred             cEEEEEEeecC-CcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897          21 FYSENYKYTEN-NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE   99 (774)
Q Consensus        21 ~~~V~l~rk~~-~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~   99 (774)
                      .++|++.+.+. .+|||.|.+    ..+++|..|.++|||+ +| |++||+|++|||++|.++++.+++.+++.+++.|.
T Consensus         9 ~~~v~l~~~~~~~~~G~~l~~----~~~~~V~~V~~~spA~-ag-L~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~~v~   82 (96)
T 2edv_A            9 RHTVKIDKDTLLQDYGFHISE----SLPLTVVAVTAGGSAH-GK-LFPGDQILQMNNEPAEDLSWERAVDILREAEDSLS   82 (96)
T ss_dssp             EEEEEECCCSSSCSCSBCCCS----SSSCBCCCBCSSSSST-TT-SCTTCBEEEESSCBSTTCCHHHHHHHHHHCSSCEE
T ss_pred             cEEEEEEECCCCCcccEEEec----CCCeEEEEECCCCchh-hC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            46778877665 489999976    4589999999999996 55 99999999999999999999999999999999999


Q ss_pred             EEeeecc
Q psy4897         100 LEVGVGY  106 (774)
Q Consensus       100 L~V~R~~  106 (774)
                      |+|.|+.
T Consensus        83 l~v~R~~   89 (96)
T 2edv_A           83 ITVVRCT   89 (96)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            9999865

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.19  E-value=1.1e-10  Score=100.95  Aligned_cols=81  Identities=28%  Similarity=0.414  Sum_probs=70.6

Q ss_pred             EEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc--CcceEE
Q psy4897         177 IIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GKLVEL  254 (774)
Q Consensus       177 ~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~--g~~V~L  254 (774)
                      .+++.+. ..+|||.+.++.+...+++|..|.+++||+++|.|++||+|++|||+++.+++++++.++|+..  ++.+.|
T Consensus         3 ~v~l~k~-~~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l   81 (85)
T 2i04_A            3 HTKLRKS-SRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDL   81 (85)
T ss_dssp             EEEEECB-TTBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEE
T ss_pred             EEEEEEC-CCCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEE
Confidence            4566664 5789999998766667899999999999999977999999999999999999999999999985  788888


Q ss_pred             EEEE
Q psy4897         255 EVKY  258 (774)
Q Consensus       255 ~V~R  258 (774)
                      +|.|
T Consensus        82 ~v~R   85 (85)
T 2i04_A           82 ELCR   85 (85)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8864

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.19  E-value=8.9e-11  Score=105.97  Aligned_cols=87  Identities=38%  Similarity=0.560  Sum_probs=76.1

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC------CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR  247 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~------~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~  247 (774)
                      +...+.+.+. ..+|||.+.++.+.      ..+++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++.
T Consensus         7 ~~~~v~l~~~-~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~   85 (105)
T 1wha_A            7 GRHVACLARS-ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTA   85 (105)
T ss_dssp             EEEEEEECCC-TTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTS
T ss_pred             eeEEEEEEeC-CCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            4566777775 56799999987652      4689999999999999998899999999999999999999999999998


Q ss_pred             cCcceEEEEEEecc
Q psy4897         248 AGKLVELEVKYLRE  261 (774)
Q Consensus       248 ~g~~V~L~V~R~~~  261 (774)
                      .++.+.|+|.|..+
T Consensus        86 ~g~~v~l~v~R~~~   99 (105)
T 1wha_A           86 ASPTIALLLEREAG   99 (105)
T ss_dssp             CCSCEEEEEEECCC
T ss_pred             CCCeEEEEEEECCC
Confidence            88999999998754

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1.4e-10  Score=103.80  Aligned_cols=87  Identities=34%  Similarity=0.510  Sum_probs=76.9

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      ..+.+.+.+.....|||.+.+..+...+++|..|.+++||+++| |++||+|++|||+++.+.++.+++..++. ++.+.
T Consensus        10 ~~~~v~l~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~v~   87 (100)
T 2eeh_A           10 IIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTS-SSRLH   87 (100)
T ss_dssp             EECCEEECCCSSSSCSEEEECCTTTTCCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSCCHHHHHHHHHS-CSSEE
T ss_pred             eEEEEEEEECCCCCccEEEEccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC-CCEEE
Confidence            46778888877778999999876556789999999999999998 99999999999999999999999999887 78999


Q ss_pred             EEEEEeccc
Q psy4897         254 LEVKYLREV  262 (774)
Q Consensus       254 L~V~R~~~~  262 (774)
                      |+|.|.++.
T Consensus        88 l~v~R~g~~   96 (100)
T 2eeh_A           88 MMVRRMGSG   96 (100)
T ss_dssp             EEEEECSCC
T ss_pred             EEEEECCcC
Confidence            999987653

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.19  E-value=9.1e-11  Score=102.95  Aligned_cols=84  Identities=27%  Similarity=0.421  Sum_probs=73.5

Q ss_pred             EEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEE
Q psy4897         176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELE  255 (774)
Q Consensus       176 r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~  255 (774)
                      +.+.+.  ...++||.+.++.+...+++|..|.++|||+++| |++||+|++|||+++.++++.++..+++..++.+.|+
T Consensus         5 ~~v~~~--~~~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   81 (91)
T 2pkt_A            5 QQIDLQ--GPGPWGFRLVGGKDFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLT   81 (91)
T ss_dssp             EEEEEE--SSSCCSEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred             EEEEEC--CCCCCCEEEEccCCCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            344444  3578999999876656789999999999999998 9999999999999999999999999999988999999


Q ss_pred             EEEeccc
Q psy4897         256 VKYLREV  262 (774)
Q Consensus       256 V~R~~~~  262 (774)
                      |.|.++.
T Consensus        82 v~R~g~~   88 (91)
T 2pkt_A           82 VARSEHE   88 (91)
T ss_dssp             EEEECCC
T ss_pred             EEECCcc
Confidence            9987653

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.19  E-value=1.1e-10  Score=103.65  Aligned_cols=87  Identities=32%  Similarity=0.510  Sum_probs=75.9

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCC----CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKEN----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK  250 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~----~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~  250 (774)
                      ...+.+.+ ...+|||.+.++.+.    ..+++|..|.+++||+++|.|++||+|++|||+++.+++++++..+|+..++
T Consensus         4 ~~~v~l~k-~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~   82 (97)
T 2jil_A            4 TVEVTLHK-EGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQ   82 (97)
T ss_dssp             EEEEEEEC-BTTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCS
T ss_pred             EEEEEEEe-CCCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            45677776 467999999886532    4689999999999999997799999999999999999999999999999899


Q ss_pred             ceEEEEEEeccc
Q psy4897         251 LVELEVKYLREV  262 (774)
Q Consensus       251 ~V~L~V~R~~~~  262 (774)
                      .+.|+|.|....
T Consensus        83 ~v~l~v~R~~~~   94 (97)
T 2jil_A           83 EAALLIEYDVSE   94 (97)
T ss_dssp             EEEEEEEEECCC
T ss_pred             eEEEEEEeCCCc
Confidence            999999987653

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.19  E-value=1.8e-10  Score=101.01  Aligned_cols=84  Identities=18%  Similarity=0.200  Sum_probs=73.6

Q ss_pred             ceEEEEEeccCC-CCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcce
Q psy4897         174 QKRIIRVKKSEN-NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLV  252 (774)
Q Consensus       174 ~~r~V~L~k~~~-~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V  252 (774)
                      +.+.+++.+... .+|||.+.++.. ..+++|..|.+++||+++| |++||+|++|||+++.++++.+++.+++..++.+
T Consensus         6 ~~~~v~l~k~~~~~~~G~~~~~~~~-~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v   83 (91)
T 1m5z_A            6 ELHKVTLYKDSGMEDFGFSVADGLL-EKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKL   83 (91)
T ss_dssp             EEEEEEEECCTTCSSSSEEEEECTT-SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEE
T ss_pred             ceEEEEEEECCCCCCccEEEEeccC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence            467788887654 589999987643 3689999999999999998 9999999999999999999999999999888999


Q ss_pred             EEEEEEe
Q psy4897         253 ELEVKYL  259 (774)
Q Consensus       253 ~L~V~R~  259 (774)
                      .|+|.|.
T Consensus        84 ~l~v~R~   90 (91)
T 1m5z_A           84 DLVISRN   90 (91)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            9999874

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.19  E-value=2.2e-10  Score=104.16  Aligned_cols=90  Identities=37%  Similarity=0.549  Sum_probs=77.8

Q ss_pred             ccccceEEEEEeccCCCCcceEEeCCCC------CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHH
Q psy4897         170 SVENQKRIIRVKKSENNGLGISIKGGKE------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK  243 (774)
Q Consensus       170 ~~~~~~r~V~L~k~~~~~LGfsi~gg~~------~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~  243 (774)
                      ....+...+.+.+. ..+|||.+.++.+      ...+++|..|.+++||+++| |++||+|++|||+++.+.++.+++.
T Consensus        11 ~~~~~~~~~~l~~~-~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~   88 (110)
T 1x5q_A           11 RIEEEELTLTILRQ-TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVE   88 (110)
T ss_dssp             CCCCEEEEEEEECS-SSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             cCCcceEEEEEecC-CCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHH
Confidence            34445677777775 7899999987654      35789999999999999998 9999999999999999999999999


Q ss_pred             HHHHcCcceEEEEEEecc
Q psy4897         244 ALKRAGKLVELEVKYLRE  261 (774)
Q Consensus       244 ~Lk~~g~~V~L~V~R~~~  261 (774)
                      .++..++.+.|+|.|.++
T Consensus        89 ~~~~~g~~v~l~v~R~g~  106 (110)
T 1x5q_A           89 ALRGAGTAVQMRVWRESG  106 (110)
T ss_dssp             HHHSCCSEEEEEEEECSS
T ss_pred             HhhCCCCeEEEEEEECCc
Confidence            888889999999998765

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.19  E-value=1.6e-10  Score=104.94  Aligned_cols=87  Identities=20%  Similarity=0.441  Sum_probs=76.1

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC------------CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHH
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN------------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA  241 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~------------~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~  241 (774)
                      +.+.+.+.+....+|||.+.++...            ..+++|..|.+++||+++| |++||+|++|||++|.++++.++
T Consensus         7 ~~~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~   85 (109)
T 1q3o_A            7 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQV   85 (109)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHH
T ss_pred             CcEEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHH
Confidence            4678888877788999999987542            1268999999999999998 99999999999999999999999


Q ss_pred             HHHHHHcCcceEEEEEEecc
Q psy4897         242 VKALKRAGKLVELEVKYLRE  261 (774)
Q Consensus       242 v~~Lk~~g~~V~L~V~R~~~  261 (774)
                      +++++..++.+.|+|.|...
T Consensus        86 ~~~l~~~~~~v~l~v~~~~~  105 (109)
T 1q3o_A           86 VNMIRQGGNTLMVKVVMVTR  105 (109)
T ss_dssp             HHHHHHTTTEEEEEEEEEEC
T ss_pred             HHHHHhCCCEEEEEEEECCC
Confidence            99999888899999987643

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.18  E-value=5.9e-11  Score=106.39  Aligned_cols=81  Identities=16%  Similarity=0.185  Sum_probs=69.6

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE   99 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~   99 (774)
                      ..+.+.+. +...+|||.+.+.    .+++|..|.+++||+++| |++||+|++|||++|.++++.+++.+++..+..|.
T Consensus        15 ~~~~v~l~-~~~~g~G~~~~~~----~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~   88 (100)
T 1whd_A           15 EKLQITIR-RGKDGFGFTICCD----SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEII   88 (100)
T ss_dssp             EEEEEEEE-CCSSSSSCBCCCS----SSCBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTCCHHHHHHHHHHCSSEEE
T ss_pred             ceEEEEEE-CCCCeeeEEEeCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            34445554 4457899998764    579999999999999998 99999999999999999999999999999888899


Q ss_pred             EEeeecc
Q psy4897         100 LEVGVGY  106 (774)
Q Consensus       100 L~V~R~~  106 (774)
                      |+|.|..
T Consensus        89 l~v~R~~   95 (100)
T 1whd_A           89 LLVWRVS   95 (100)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            9998864

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.1e-10  Score=104.97  Aligned_cols=87  Identities=24%  Similarity=0.482  Sum_probs=76.5

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC--CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKL  251 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~--~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~  251 (774)
                      ..+.+.+.+. ..+|||.+.++.+.  ..+++|..|.+++||+++|.|++||+|++|||++|.++++.+++.+++..++.
T Consensus        11 ~~~~v~l~~~-~~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~   89 (104)
T 2djt_A           11 GHFSVELVRG-YAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQ   89 (104)
T ss_dssp             CCEEEEEECC-SSSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTCSE
T ss_pred             ceEEEEEEeC-CCCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4678888875 47899999986543  56899999999999999977999999999999999999999999999988899


Q ss_pred             eEEEEEEecc
Q psy4897         252 VELEVKYLRE  261 (774)
Q Consensus       252 V~L~V~R~~~  261 (774)
                      +.|+|.|.++
T Consensus        90 v~l~v~R~g~   99 (104)
T 2djt_A           90 LHLVIRRPLS   99 (104)
T ss_dssp             EEEEECCCCC
T ss_pred             EEEEEEECCC
Confidence            9999987654

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.2e-11  Score=115.78  Aligned_cols=87  Identities=23%  Similarity=0.296  Sum_probs=73.6

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccC----------------------------CCCCCeEEEEecCCCHHhhhCCCCCCC
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGK----------------------------ENKMPILISKIFKGMAADQTEQLYVGD   69 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~----------------------------e~~~gi~Vs~V~pGSpAaraG~LqvGD   69 (774)
                      ....++|+|.| ...+|||+|.+..                            +...+++|..|.+++||+++| |++||
T Consensus         6 ~~~~r~v~l~r-~~~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD   83 (126)
T 2yuy_A            6 SGGPKTVTLKR-TSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGD   83 (126)
T ss_dssp             SSSCCCEEEEC-CSSSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHT-CCSSC
T ss_pred             CCCCEEEEEEE-CCCCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcC-CCCCC
Confidence            34556788865 4578999998511                            112569999999999999998 99999


Q ss_pred             EEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          70 AILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        70 ~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      +|++|||++|.++++.+++.+++..++.|.|+|.|..
T Consensus        84 ~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~  120 (126)
T 2yuy_A           84 RIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKD  120 (126)
T ss_dssp             CCCEETTEECSSCCHHHHHHHHHTCTTEEEEECCCCC
T ss_pred             EEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECC
Confidence            9999999999999999999999999999999998864

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.18  E-value=3.4e-11  Score=105.79  Aligned_cols=85  Identities=27%  Similarity=0.371  Sum_probs=72.1

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      ++|++.+.+.. .+|||.+.+... ..+++|..|.++|||+++| |++||+|++|||+++.+++++++.++|+..++.+.
T Consensus         3 ~pr~v~l~k~~-~~~G~~l~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~   79 (91)
T 2vsp_A            3 KPKLCRLAKGE-NGYGFHLNAIRG-LPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVT   79 (91)
T ss_dssp             CEEEEEEECBT-TBTSCCCBCCTT-CSCCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEE
T ss_pred             CcEEEEEEeCC-CcccEEEEeccC-CCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEE
Confidence            57899999864 589999976533 4578999999999999998 99999999999999998889999999998889999


Q ss_pred             EEEEEecc
Q psy4897         254 LEVKYLRE  261 (774)
Q Consensus       254 L~V~R~~~  261 (774)
                      |+|.|...
T Consensus        80 l~v~r~~~   87 (91)
T 2vsp_A           80 LLVCGKKA   87 (91)
T ss_dssp             EEEEC---
T ss_pred             EEEEeCCc
Confidence            99988654

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.18  E-value=1.4e-10  Score=106.34  Aligned_cols=88  Identities=34%  Similarity=0.514  Sum_probs=76.6

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCCC-------CCCeEEEEecCCChhhh-ccCCCCCCEEEEECCeecCCCCHHHHHHH
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKEN-------KMPILISKIFKGMAADQ-TEQLYVGDAILSVNGEDLREATHDEAVKA  244 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~~-------~~pi~Is~V~pgspA~~-aG~L~~GD~IlaVNG~~V~~~t~~e~v~~  244 (774)
                      .+.+.|.+.+....+|||.+.++.+.       ..+++|..|.+++||++ +| |++||+|++|||+++.++++++++++
T Consensus         9 ~~~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~ag-L~~GD~I~~ing~~v~~~~~~~~~~~   87 (114)
T 1uew_A            9 LQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK-LKVGDRILAVNGQSIINMPHADIVKL   87 (114)
T ss_dssp             CCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSS-CCTTCBEEEETTBCTTTSCHHHHHHH
T ss_pred             ccceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCC-CCCCCEEEEECCEECCCCCHHHHHHH
Confidence            35788889887788999999875432       23789999999999999 76 99999999999999999999999999


Q ss_pred             HHHcCcceEEEEEEecc
Q psy4897         245 LKRAGKLVELEVKYLRE  261 (774)
Q Consensus       245 Lk~~g~~V~L~V~R~~~  261 (774)
                      |+..+..+.|+|.|...
T Consensus        88 l~~~g~~v~l~v~r~~~  104 (114)
T 1uew_A           88 IKDAGLSVTLRIIPQEE  104 (114)
T ss_dssp             HHHTTTEEEEEECCCSC
T ss_pred             HHcCCCeEEEEEEeCCc
Confidence            99988999999987654

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.18  E-value=4.4e-11  Score=110.01  Aligned_cols=88  Identities=27%  Similarity=0.445  Sum_probs=78.1

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCC---CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecC-CCCHHHHHHHHHHcC
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR-EATHDEAVKALKRAG  249 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~---~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~-~~t~~e~v~~Lk~~g  249 (774)
                      ..+.+.+.+....+|||.+.++..   ...+++|..|.+++||+++|.|++||+|++|||+++. ++++.+++.+++..+
T Consensus        20 ~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~   99 (117)
T 2o2t_A           20 HVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAK   99 (117)
T ss_dssp             CEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHCC
T ss_pred             eEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCC
Confidence            578899998777899999987642   2358999999999999999889999999999999998 889999999999999


Q ss_pred             cceEEEEEEecc
Q psy4897         250 KLVELEVKYLRE  261 (774)
Q Consensus       250 ~~V~L~V~R~~~  261 (774)
                      +.+.|+|.|.+.
T Consensus       100 ~~v~l~v~R~~~  111 (117)
T 2o2t_A          100 DTVQLVIARGSL  111 (117)
T ss_dssp             SEEEEEEESSCC
T ss_pred             CEEEEEEEeCCc
Confidence            999999998654

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.18  E-value=1.5e-10  Score=108.42  Aligned_cols=90  Identities=22%  Similarity=0.377  Sum_probs=79.0

Q ss_pred             ccceEEEEEeccCCCCcceEEeCCCC-----CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy4897         172 ENQKRIIRVKKSENNGLGISIKGGKE-----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK  246 (774)
Q Consensus       172 ~~~~r~V~L~k~~~~~LGfsi~gg~~-----~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk  246 (774)
                      ..+.+.+.+.+....+|||.+.++.+     ...+++|..|.+++||+++|.|++||+|++|||+++.++++++++++|+
T Consensus        13 ~~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~   92 (129)
T 2dmz_A           13 LFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLR   92 (129)
T ss_dssp             CEEEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHH
T ss_pred             CCcEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            44577888877678899999987543     2458999999999999999889999999999999999999999999999


Q ss_pred             HcCcceEEEEEEecc
Q psy4897         247 RAGKLVELEVKYLRE  261 (774)
Q Consensus       247 ~~g~~V~L~V~R~~~  261 (774)
                      ..+..+.|+|.|.+.
T Consensus        93 ~~~~~v~l~v~R~~~  107 (129)
T 2dmz_A           93 NAGQVVHLTLVRRKT  107 (129)
T ss_dssp             HCCSSEEEEEEEESS
T ss_pred             cCCCeEEEEEEeCCc
Confidence            988999999998765

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.17  E-value=2.2e-10  Score=103.68  Aligned_cols=89  Identities=22%  Similarity=0.327  Sum_probs=76.3

Q ss_pred             cceEEEEEe-ccCCCCcceEEeCCCCC-----CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy4897         173 NQKRIIRVK-KSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK  246 (774)
Q Consensus       173 ~~~r~V~L~-k~~~~~LGfsi~gg~~~-----~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk  246 (774)
                      .+...+.+. +....+|||.+.++.+.     ..+++|..|.+++||+++|.|++||+|++|||++|.++++.+++.+++
T Consensus        11 ~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~   90 (108)
T 2jre_A           11 FSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLR   90 (108)
T ss_dssp             CEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHH
T ss_pred             cEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            346667775 35678999999886542     358999999999999999879999999999999999999999999999


Q ss_pred             HcCcceEEEEEEecc
Q psy4897         247 RAGKLVELEVKYLRE  261 (774)
Q Consensus       247 ~~g~~V~L~V~R~~~  261 (774)
                      ..+..+.|+|.|.+.
T Consensus        91 ~~g~~v~l~v~R~~~  105 (108)
T 2jre_A           91 NAGNPVRLLLIRRLP  105 (108)
T ss_dssp             HHCSEEEEEEEECCC
T ss_pred             cCCCeEEEEEEeCCc
Confidence            888999999988654

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.17  E-value=1.8e-10  Score=107.31  Aligned_cols=89  Identities=28%  Similarity=0.439  Sum_probs=78.9

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCCC-CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcc
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKEN-KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKL  251 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~~-~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~  251 (774)
                      .+.+.+.+.+. ..+|||.+.++.+. ..+++|..|.+++||+++|.|++||+|++|||++|.++++.+++.+++..+..
T Consensus        24 ~~~~~v~l~k~-~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~  102 (124)
T 2daz_A           24 GELHIIELEKD-KNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSK  102 (124)
T ss_dssp             SEEEEEEEECC-SSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSCSE
T ss_pred             CceEEEEEEeC-CCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            45678888886 67999999987553 46899999999999999988999999999999999999999999999998889


Q ss_pred             eEEEEEEeccc
Q psy4897         252 VELEVKYLREV  262 (774)
Q Consensus       252 V~L~V~R~~~~  262 (774)
                      +.|+|.|....
T Consensus       103 v~l~v~R~~~~  113 (124)
T 2daz_A          103 VKLVFIRNEDA  113 (124)
T ss_dssp             EEEEEEECTTH
T ss_pred             EEEEEEeCCCc
Confidence            99999987654

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.17  E-value=3.1e-10  Score=103.33  Aligned_cols=86  Identities=26%  Similarity=0.439  Sum_probs=75.8

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      ..+.+.+.+. ..+|||.+.++.  ..+++|..|.+++||+++|+|++||+|++|||+++.++++++++.+++..++.+.
T Consensus        15 ~~~~v~l~~~-~~~lG~~l~~~~--~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~   91 (111)
T 2dlu_A           15 HVEEVELIND-GSGLGFGIVGGK--TSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVR   91 (111)
T ss_dssp             EEEEEEEECC-SSCCCEEEECCS--SSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSEEE
T ss_pred             ceEEEEEEeC-CCccCEEEeccC--CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            4678888875 578999998763  3589999999999999997799999999999999999999999999998889999


Q ss_pred             EEEEEeccc
Q psy4897         254 LEVKYLREV  262 (774)
Q Consensus       254 L~V~R~~~~  262 (774)
                      |+|.|....
T Consensus        92 l~v~R~~~~  100 (111)
T 2dlu_A           92 MLVARDPAG  100 (111)
T ss_dssp             EEEEESCTT
T ss_pred             EEEEeCCCC
Confidence            999886543

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.16  E-value=1e-10  Score=105.64  Aligned_cols=87  Identities=25%  Similarity=0.332  Sum_probs=77.2

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEE
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVEL  254 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L  254 (774)
                      +|.+.+.+.....+||.+..+.. ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++.+++..++.+.|
T Consensus         2 ~r~v~l~~~~~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l   79 (106)
T 3ngh_A            2 PRESKLSKQEGQNYGFFLRIEKD-TDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTL   79 (106)
T ss_dssp             CEEEEEECCTTCCCCCEEECCTT-CCSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEE
T ss_pred             CEEEEEEeCCCCeeCEEEEEEeC-CCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEE
Confidence            57888988877899999987643 4578999999999999998 999999999999999999999999999998999999


Q ss_pred             EEEEecccc
Q psy4897         255 EVKYLREVT  263 (774)
Q Consensus       255 ~V~R~~~~~  263 (774)
                      +|.|.....
T Consensus        80 ~v~r~~~~~   88 (106)
T 3ngh_A           80 LVLDGDSYE   88 (106)
T ss_dssp             EEECHHHHH
T ss_pred             EEEECCeee
Confidence            999866543

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.16  E-value=2.6e-11  Score=110.67  Aligned_cols=86  Identities=35%  Similarity=0.409  Sum_probs=76.0

Q ss_pred             eEEEEEeccCCCCcceEEeCCCC---------CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHH
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKE---------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL  245 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~---------~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~L  245 (774)
                      .+.+.+.+....+|||.+.++.+         ...+++|..|.+++||+++|.|++||+|++|||+++.++++.+++.++
T Consensus        10 ~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l   89 (111)
T 1uju_A           10 LRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLL   89 (111)
T ss_dssp             SSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHH
T ss_pred             cEEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            56678888767899999998763         246899999999999999988999999999999999999999999999


Q ss_pred             HHcCcceEEEEEEec
Q psy4897         246 KRAGKLVELEVKYLR  260 (774)
Q Consensus       246 k~~g~~V~L~V~R~~  260 (774)
                      +..++.+.|+|.|..
T Consensus        90 ~~~g~~v~l~v~r~~  104 (111)
T 1uju_A           90 RSVGDTLTVLVCDGF  104 (111)
T ss_dssp             SSCSSEEEECCCCCC
T ss_pred             HcCCCeEEEEEEECC
Confidence            988899999987653

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=9.7e-11  Score=103.60  Aligned_cols=84  Identities=26%  Similarity=0.378  Sum_probs=74.4

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEE
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVEL  254 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L  254 (774)
                      ++.+.+..  ..+|||.+.++.+...+++|..|.+++||+++| |++||+|++|||+++.++++.+++.+++..++.+.|
T Consensus         9 ~~~v~l~~--~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l   85 (94)
T 2eeg_A            9 PHSVTLRG--PSPWGFRLVGGRDFSAPLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTL   85 (94)
T ss_dssp             CEEEEECC--SSCCSCCEECCTTTTSCCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEEE
T ss_pred             eEEEEEeC--CCccCEEEECccCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            56667743  468999999987777889999999999999998 999999999999999999999999999988889999


Q ss_pred             EEEEecc
Q psy4897         255 EVKYLRE  261 (774)
Q Consensus       255 ~V~R~~~  261 (774)
                      +|.|...
T Consensus        86 ~v~R~g~   92 (94)
T 2eeg_A           86 SVSSGPS   92 (94)
T ss_dssp             EEECCSS
T ss_pred             EEEeCCC
Confidence            9987653

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.16  E-value=1.2e-10  Score=102.71  Aligned_cols=85  Identities=28%  Similarity=0.458  Sum_probs=72.9

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      ++|.+.+.+. ..++||.+.++.. ..+++|..|.+++||+++| |++||+|++|||+++.++++++++.+|+..++.+.
T Consensus         5 ~~r~v~l~~~-~~~~G~~l~~~~~-~~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~   81 (95)
T 3r68_A            5 QPRVVVIKKG-SNGYGFYLRAGPE-QKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTT   81 (95)
T ss_dssp             CCEEEEEECB-TTBCSCEEEEC---CCSEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEE
T ss_pred             CcEEEEEecC-CCcccEEEEecCC-CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            4688888884 6789999987543 2489999999999999998 99999999999999999999999999999888888


Q ss_pred             EEEEEecc
Q psy4897         254 LEVKYLRE  261 (774)
Q Consensus       254 L~V~R~~~  261 (774)
                      +++.|...
T Consensus        82 ~~~~r~~~   89 (95)
T 3r68_A           82 LLVLDKEL   89 (95)
T ss_dssp             EEEEECC-
T ss_pred             EEEECCcc
Confidence            88876543

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=99.16  E-value=1.6e-10  Score=103.05  Aligned_cols=82  Identities=17%  Similarity=0.182  Sum_probs=66.4

Q ss_pred             CcEEEEEEeecC--CcccEEEEccCCC-CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCc
Q psy4897          20 DFYSENYKYTEN--NGLGISIKGGKEN-KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK   96 (774)
Q Consensus        20 ~~~~V~l~rk~~--~gLGfsI~GG~e~-~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~   96 (774)
                      ..+.+.+.|.+.  .+|||+|.++.+. ..+++|..|.++|||+++| |++||+|++|||++|.++++.++..++++  .
T Consensus         6 ~~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~l~~~l~~--~   82 (94)
T 3kzd_A            6 VTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQ--P   82 (94)
T ss_dssp             EEEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHS--S
T ss_pred             ceeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC--C
Confidence            456677777664  4899999985443 3589999999999999998 99999999999999999999999999985  5


Q ss_pred             eEEEEeee
Q psy4897          97 VVELEVGV  104 (774)
Q Consensus        97 ~V~L~V~R  104 (774)
                      .++|+|..
T Consensus        83 ~l~ltV~~   90 (94)
T 3kzd_A           83 SLGLLVRT   90 (94)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEe
Confidence            67777753

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.16  E-value=1.5e-10  Score=108.68  Aligned_cols=89  Identities=26%  Similarity=0.351  Sum_probs=77.4

Q ss_pred             cccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc--
Q psy4897         171 VENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--  248 (774)
Q Consensus       171 ~~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~--  248 (774)
                      ...+...+.+.+. ..+|||.+.++.+...+++|..|.+++||+++|.|++||+|++|||++|.++++.+++++|+..  
T Consensus        15 ~~g~~~~v~l~~~-~~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~   93 (129)
T 2kpk_A           15 LKGKFIHTKLRKS-SRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPI   93 (129)
T ss_dssp             SCSEEEEEEEEEC-SSCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCT
T ss_pred             cCCcEEEEEEEEC-CCcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            4445667788874 6789999998765566799999999999999988999999999999999999999999999985  


Q ss_pred             CcceEEEEEEec
Q psy4897         249 GKLVELEVKYLR  260 (774)
Q Consensus       249 g~~V~L~V~R~~  260 (774)
                      ++.|.|+|.|..
T Consensus        94 g~~v~l~v~R~~  105 (129)
T 2kpk_A           94 GASVDLELCRGY  105 (129)
T ss_dssp             TEEEEEEEEECS
T ss_pred             CCeEEEEEEeCC
Confidence            788999999864

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.16  E-value=2.4e-10  Score=100.11  Aligned_cols=82  Identities=30%  Similarity=0.468  Sum_probs=70.8

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      ++|++.+.+. ..+|||.+.++.+ ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++.+++..++.+.
T Consensus         3 ~~r~v~l~r~-~~g~G~~~~~~~~-~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~   79 (91)
T 1g9o_A            3 LPRLCCLEKG-PNGYGFHLHGEKG-KLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVR   79 (91)
T ss_dssp             CCEEEEEECB-TTBCCEEEEECTT-CSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEE
T ss_pred             ccEEEEEEeC-CCcccEEEEecCC-CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEE
Confidence            4788999886 4689999987643 4689999999999999998 99999999999999999999999999998766666


Q ss_pred             EEEEE
Q psy4897         254 LEVKY  258 (774)
Q Consensus       254 L~V~R  258 (774)
                      +++.+
T Consensus        80 ~~~~~   84 (91)
T 1g9o_A           80 LLVVD   84 (91)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            65554

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.15  E-value=2.1e-10  Score=100.78  Aligned_cols=82  Identities=18%  Similarity=0.258  Sum_probs=71.9

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      ..|++.+.+. ..++||.+.+.    .+++|..|.+++||+++| |++||+|++|||+++.++++.++.++++..++.+.
T Consensus         3 ~~r~v~l~~~-~~g~G~~l~~~----~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~   76 (91)
T 2f5y_A            3 RYRQITIPRG-KDGFGFTICCD----SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEII   76 (91)
T ss_dssp             EEEEEEEECB-TTBTSEEEECS----SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEE
T ss_pred             ceEEEEEEeC-CCCccEEEecC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            4678888875 57799999763    469999999999999998 99999999999999999999999999998888899


Q ss_pred             EEEEEecc
Q psy4897         254 LEVKYLRE  261 (774)
Q Consensus       254 L~V~R~~~  261 (774)
                      |+|.|...
T Consensus        77 l~v~R~~~   84 (91)
T 2f5y_A           77 LLVWRMVP   84 (91)
T ss_dssp             EEEEECC-
T ss_pred             EEEEeCCC
Confidence            99988643

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.15  E-value=2.5e-10  Score=103.17  Aligned_cols=88  Identities=27%  Similarity=0.515  Sum_probs=76.8

Q ss_pred             ccceEEEEEeccCCCCcceEEeCCCCC------CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHH
Q psy4897         172 ENQKRIIRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL  245 (774)
Q Consensus       172 ~~~~r~V~L~k~~~~~LGfsi~gg~~~------~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~L  245 (774)
                      ..+.+.+.+.+....+|||.+.++.+.      ..+++|..|.+++||+ +| |++||+|++|||+++.++++.+.+..+
T Consensus         5 ~~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~~v~~~~~~~~~~~~   82 (107)
T 2h2b_A            5 IWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQ-LQENDRVAMVNGVSMDNVEHAFAVQQL   82 (107)
T ss_dssp             CEEEEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TT-BCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             cceeEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hC-CCCCCEEEEECCEECCCccHHHHHHHh
Confidence            345788999997778999999987552      4589999999999999 76 999999999999999999998888888


Q ss_pred             HHcCcceEEEEEEecc
Q psy4897         246 KRAGKLVELEVKYLRE  261 (774)
Q Consensus       246 k~~g~~V~L~V~R~~~  261 (774)
                      +..++.+.|+|.|.+.
T Consensus        83 ~~~g~~v~l~v~R~~~   98 (107)
T 2h2b_A           83 RKSGKNAKITIRRKKG   98 (107)
T ss_dssp             HTCCSEEEEEEEEESC
T ss_pred             hCCCCEEEEEEEECCC
Confidence            8888999999998764

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.15  E-value=1.9e-10  Score=113.87  Aligned_cols=84  Identities=38%  Similarity=0.514  Sum_probs=72.9

Q ss_pred             EEEEEEeecCCcccEEEEccCCCC-----CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCc
Q psy4897          22 YSENYKYTENNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK   96 (774)
Q Consensus        22 ~~V~l~rk~~~gLGfsI~GG~e~~-----~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~   96 (774)
                      .++.+.+ ...+|||++.++.+..     .|++|..|.|+|||+++|+|++||+|++|||++|.++++.+++.+++++++
T Consensus       102 ~~v~l~~-~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~  180 (196)
T 3gsl_A          102 MEIKLIK-GPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYD  180 (196)
T ss_dssp             EEEEEEE-BTTBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCCE
T ss_pred             EEEEEec-CCCCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCCC
Confidence            3445543 4459999999876543     489999999999999998899999999999999999999999999999999


Q ss_pred             eEEEEeeecc
Q psy4897          97 VVELEVGVGY  106 (774)
Q Consensus        97 ~V~L~V~R~~  106 (774)
                      .+.|+|.|+.
T Consensus       181 ~v~l~v~R~~  190 (196)
T 3gsl_A          181 VVYLKVAKPS  190 (196)
T ss_dssp             EEEEEEEEES
T ss_pred             eEEEEEeCCC
Confidence            9999998865

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.15  E-value=2e-10  Score=103.77  Aligned_cols=87  Identities=32%  Similarity=0.528  Sum_probs=74.9

Q ss_pred             ceEEEEEeccCCCCcceEEeCCC---CCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGK---ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK  250 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~---~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~  250 (774)
                      +...+++ + ...+|||++.++.   ....+++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++..++
T Consensus        11 ~~~~v~l-~-~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~   88 (106)
T 3axa_A           11 EIITVTL-K-KQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSS   88 (106)
T ss_dssp             CEEEEEE-E-CSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCS
T ss_pred             eEEEEEE-C-CCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4556666 4 4788999998743   234689999999999999998899999999999999999999999999999999


Q ss_pred             ceEEEEEEeccc
Q psy4897         251 LVELEVKYLREV  262 (774)
Q Consensus       251 ~V~L~V~R~~~~  262 (774)
                      .+.|+|.|....
T Consensus        89 ~v~l~v~R~~~~  100 (106)
T 3axa_A           89 VVTLEVAKQGAI  100 (106)
T ss_dssp             EEEEEEECCCSS
T ss_pred             eEEEEEEeCCcc
Confidence            999999987654

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.15  E-value=2e-10  Score=103.96  Aligned_cols=87  Identities=28%  Similarity=0.434  Sum_probs=75.8

Q ss_pred             ceEEEEEeccCCCCcceEEeC---CCC---CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH
Q psy4897         174 QKRIIRVKKSENNGLGISIKG---GKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR  247 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~g---g~~---~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~  247 (774)
                      +.+.+.+.+. ..+|||.+.+   +.+   ...+++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++.
T Consensus         9 ~~~~v~l~k~-~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   87 (107)
T 1wf8_A            9 ELFPVELEKD-EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRN   87 (107)
T ss_dssp             EEEEEEEECB-TTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHH
T ss_pred             eEEEEEEEEC-CCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            4667788775 5789999998   333   24689999999999999998899999999999999999999999999999


Q ss_pred             cCcceEEEEEEecc
Q psy4897         248 AGKLVELEVKYLRE  261 (774)
Q Consensus       248 ~g~~V~L~V~R~~~  261 (774)
                      .++.+.|+|.|...
T Consensus        88 ~~~~v~l~v~R~~~  101 (107)
T 1wf8_A           88 TKGNVRFVIGREKP  101 (107)
T ss_dssp             CCSEEEEEEEEECC
T ss_pred             CCCeEEEEEEeCCC
Confidence            99999999998654

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.14  E-value=2.8e-10  Score=102.02  Aligned_cols=88  Identities=34%  Similarity=0.551  Sum_probs=74.0

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC---------CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHH
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN---------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA  244 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~---------~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~  244 (774)
                      .++++.+.+.....|||.+.++.+.         ..+++|..|.++|||+++|.|++||+|++|||+++.++++.++.++
T Consensus         4 dp~~v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~   83 (103)
T 2fcf_A            4 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA   83 (103)
T ss_dssp             SCEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCEEEEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            3678888887778899999875431         2579999999999999997799999999999999999999999999


Q ss_pred             HHHcCcceEEEEEEecc
Q psy4897         245 LKRAGKLVELEVKYLRE  261 (774)
Q Consensus       245 Lk~~g~~V~L~V~R~~~  261 (774)
                      |+..++.+.|+|.|.+.
T Consensus        84 l~~~~~~v~l~v~r~~~  100 (103)
T 2fcf_A           84 IRKAGNPVVFMVQSIIS  100 (103)
T ss_dssp             HHTCCSSEEEEEECCCC
T ss_pred             HHhCCCcEEEEEEECCC
Confidence            99877799999988654

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.14  E-value=2.8e-10  Score=103.48  Aligned_cols=87  Identities=24%  Similarity=0.353  Sum_probs=76.7

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC---CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK  250 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~---~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~  250 (774)
                      +.+.+.+.+. ..+|||.+.++.+.   ..+++|..|.+++||+++|.|++||+|++|||+++.++++.+++..++..++
T Consensus         8 ~~~~v~l~~~-~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   86 (110)
T 1um1_A            8 YVFTVELERG-PSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGK   86 (110)
T ss_dssp             CEEEEEEECC-TTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCS
T ss_pred             cEEEEEEEEC-CCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            5778888875 47899999886542   4589999999999999998899999999999999999999999999999899


Q ss_pred             ceEEEEEEecc
Q psy4897         251 LVELEVKYLRE  261 (774)
Q Consensus       251 ~V~L~V~R~~~  261 (774)
                      .+.|+|.|...
T Consensus        87 ~v~l~v~R~~~   97 (110)
T 1um1_A           87 KMRFLVAKSDV   97 (110)
T ss_dssp             EEEEEEECCCH
T ss_pred             eEEEEEEeCCc
Confidence            99999998654

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.14  E-value=1.4e-10  Score=108.76  Aligned_cols=89  Identities=25%  Similarity=0.359  Sum_probs=77.1

Q ss_pred             cceEEEEEeccC-CCCcceEEeCCCC---------CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHH
Q psy4897         173 NQKRIIRVKKSE-NNGLGISIKGGKE---------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV  242 (774)
Q Consensus       173 ~~~r~V~L~k~~-~~~LGfsi~gg~~---------~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v  242 (774)
                      ...+.+.+.+.. ..+|||.+.++.+         ...+++|+.|.+++||+++|.|++||+|++|||++|.+.++++++
T Consensus        28 ~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~  107 (128)
T 1nf3_C           28 ETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVT  107 (128)
T ss_dssp             TTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHH
T ss_pred             CccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            357889998875 5789999987643         124799999999999999987899999999999999999999999


Q ss_pred             HHHHHcCcceEEEEEEecc
Q psy4897         243 KALKRAGKLVELEVKYLRE  261 (774)
Q Consensus       243 ~~Lk~~g~~V~L~V~R~~~  261 (774)
                      .+|+..+..+.|+|.|..+
T Consensus       108 ~~l~~~~~~v~l~v~r~~~  126 (128)
T 1nf3_C          108 DMMIANSRNLIITVRPANQ  126 (128)
T ss_dssp             HHHHHTTTSEEEEEECCCC
T ss_pred             HHHHcCCCeEEEEEEECCc
Confidence            9999988899999988654

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.13  E-value=5.1e-11  Score=111.94  Aligned_cols=83  Identities=24%  Similarity=0.289  Sum_probs=72.5

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCc
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGK   96 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~   96 (774)
                      ..++++.+ .+...+|||+|.+.   ..+++|..|.++|||+++|+|++||+|++|||++|.+.++.+++.+++.  .|+
T Consensus        26 ~~~~~~~l-~k~~~glG~~i~~~---~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~  101 (126)
T 1wif_A           26 NKVIQTKL-TVGNLGLGLVVIQN---GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGT  101 (126)
T ss_dssp             CCEEEEEE-ECCTTCCCCCEEEE---TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSC
T ss_pred             CceEEEEE-ecCCceEeEEEEcC---CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCC
Confidence            35666776 46678999999863   3579999999999999998899999999999999999999999999997  588


Q ss_pred             eEEEEeeec
Q psy4897          97 VVELEVGVG  105 (774)
Q Consensus        97 ~V~L~V~R~  105 (774)
                      .|+|+|.|+
T Consensus       102 ~v~l~V~R~  110 (126)
T 1wif_A          102 VLQIKAYRG  110 (126)
T ss_dssp             EEEEEEESS
T ss_pred             EEEEEEEEC
Confidence            999999886

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.13  E-value=3.2e-10  Score=100.42  Aligned_cols=85  Identities=40%  Similarity=0.581  Sum_probs=74.2

Q ss_pred             eEEEEEeccCCCCcceEEeCCCC------CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKE------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA  248 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~------~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~  248 (774)
                      ...+.+.+. ..+|||.+.++.+      ...+++|..|.+++||+++| |++||+|++|||+++.+.++.+++..++..
T Consensus         4 ~~~v~~~~~-~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~   81 (97)
T 2w4f_A            4 ELTLTILRQ-TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGA   81 (97)
T ss_dssp             EEEEEEECB-TTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred             EEEEEEEeC-CCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhCC
Confidence            456677765 7899999987654      35789999999999999998 999999999999999999999888888888


Q ss_pred             CcceEEEEEEecc
Q psy4897         249 GKLVELEVKYLRE  261 (774)
Q Consensus       249 g~~V~L~V~R~~~  261 (774)
                      +..+.|+|.|.++
T Consensus        82 g~~v~l~v~R~g~   94 (97)
T 2w4f_A           82 GTAVQMRVWRERE   94 (97)
T ss_dssp             CSEEEEEEECCSS
T ss_pred             CCeEEEEEEeCCc
Confidence            9999999998654

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=99.13  E-value=2.2e-10  Score=100.22  Aligned_cols=80  Identities=19%  Similarity=0.226  Sum_probs=66.9

Q ss_pred             EEEEEeecCC--cccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceE
Q psy4897          23 SENYKYTENN--GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVV   98 (774)
Q Consensus        23 ~V~l~rk~~~--gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V   98 (774)
                      .+.+.+.++.  +|||++...   ..+++|..|.|+|||+++| |++||+|++|||+++.+.++.++..+++.  .++.|
T Consensus         6 ~~~~~~~~~~~~~lG~~~~~~---~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v   81 (90)
T 2eaq_A            6 RISINQTPGKSLDFGFTIKWD---IPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHL   81 (90)
T ss_dssp             EEEEECCTTCSSCCSEEEEEE---TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEE
T ss_pred             EEEEEecCCCCCcccEEEEec---CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEE
Confidence            4556566554  899998743   3589999999999999998 99999999999999987788888888884  58899


Q ss_pred             EEEeeecc
Q psy4897          99 ELEVGVGY  106 (774)
Q Consensus        99 ~L~V~R~~  106 (774)
                      .|+|.|++
T Consensus        82 ~l~v~R~g   89 (90)
T 2eaq_A           82 VMDVRRYG   89 (90)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEeCC
Confidence            99998753

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.13  E-value=3.4e-10  Score=104.18  Aligned_cols=86  Identities=26%  Similarity=0.363  Sum_probs=74.8

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      ..+.+.+.+...+.+||.+.++.+...+++|..|.++|||+++|.|++||+|++|||+++.+.+++++.++|+..++.+.
T Consensus        24 ~~~~V~l~~~~~~~lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~  103 (114)
T 2gzv_A           24 VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT  103 (114)
T ss_dssp             CCEEEEEECCTTSCCSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEEEECCCCcEeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            46888998887778999999876655689999999999999997799999999999999988889999999998777888


Q ss_pred             EEEEEe
Q psy4897         254 LEVKYL  259 (774)
Q Consensus       254 L~V~R~  259 (774)
                      |+|.+.
T Consensus       104 l~v~~~  109 (114)
T 2gzv_A          104 IHYNKL  109 (114)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            888654

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.13  E-value=6.6e-11  Score=104.68  Aligned_cols=84  Identities=23%  Similarity=0.428  Sum_probs=73.2

Q ss_pred             EEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEE
Q psy4897         178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK  257 (774)
Q Consensus       178 V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~  257 (774)
                      +.+......+|||.+.++.+...+++|..|.+++||+++| |++||+|++|||+++.++++.++.++++..++.+.|+|.
T Consensus         8 ~~~~~~~~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~   86 (94)
T 1vb7_A            8 LTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLD   86 (94)
T ss_dssp             EEEEECSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEE
T ss_pred             EEEEecCCCCccEEEecccCCCCCeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEE
Confidence            3444456789999998876666789999999999999998 999999999999999999999999999987789999999


Q ss_pred             Eeccc
Q psy4897         258 YLREV  262 (774)
Q Consensus       258 R~~~~  262 (774)
                      |.++.
T Consensus        87 R~g~~   91 (94)
T 1vb7_A           87 RSSGP   91 (94)
T ss_dssp             CCCCC
T ss_pred             ECCcC
Confidence            87653

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.13  E-value=4.6e-10  Score=104.24  Aligned_cols=90  Identities=24%  Similarity=0.390  Sum_probs=78.5

Q ss_pred             ccceEEEEEeccCCCCcceEEeCCC----CCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH
Q psy4897         172 ENQKRIIRVKKSENNGLGISIKGGK----ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR  247 (774)
Q Consensus       172 ~~~~r~V~L~k~~~~~LGfsi~gg~----~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~  247 (774)
                      ..+.+.+.+.+....+|||.+.++.    ....+++|..|.+++||+++|.|++||+|++|||+++.++++++++++|+.
T Consensus        13 ~~~~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~   92 (122)
T 1v5q_A           13 HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRD   92 (122)
T ss_dssp             CEEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHH
T ss_pred             cceeEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            3467888998877799999999762    235789999999999999997799999999999999999999999999998


Q ss_pred             c--CcceEEEEEEecc
Q psy4897         248 A--GKLVELEVKYLRE  261 (774)
Q Consensus       248 ~--g~~V~L~V~R~~~  261 (774)
                      .  ++.+.|+|.|...
T Consensus        93 ~~~g~~v~l~v~R~~~  108 (122)
T 1v5q_A           93 SSITSKVTLEIEFDVA  108 (122)
T ss_dssp             HTTTTCEEEEEEEECC
T ss_pred             CCCCCeEEEEEEECCc
Confidence            4  7899999998654

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.13  E-value=3.7e-10  Score=99.85  Aligned_cols=81  Identities=31%  Similarity=0.381  Sum_probs=70.2

Q ss_pred             EEEEEeccCCCCcceEEeCCCC--------CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH
Q psy4897         176 RIIRVKKSENNGLGISIKGGKE--------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR  247 (774)
Q Consensus       176 r~V~L~k~~~~~LGfsi~gg~~--------~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~  247 (774)
                      .++.+.+.  .+|||.+.++.+        ...+++|..|.+++||++ | |++||+|++|||+++.++++.+++..++.
T Consensus         5 ~~v~l~~~--~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~~   80 (95)
T 1mfg_A            5 IRVRVEKD--PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKT   80 (95)
T ss_dssp             EEEEEECS--SSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCBHHHHHHHHHH
T ss_pred             EEEEECCC--CCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEECCEEcCCCCHHHHHHHhhc
Confidence            44556553  489999998753        346899999999999999 7 99999999999999999999999999998


Q ss_pred             cCcceEEEEEEec
Q psy4897         248 AGKLVELEVKYLR  260 (774)
Q Consensus       248 ~g~~V~L~V~R~~  260 (774)
                      .++.+.|+|.|..
T Consensus        81 ~~~~v~l~v~R~~   93 (95)
T 1mfg_A           81 FQNTVELIIVREV   93 (95)
T ss_dssp             CCSEEEEEEEEEC
T ss_pred             CCCeEEEEEEeCC
Confidence            8999999998864

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.13  E-value=2e-10  Score=102.97  Aligned_cols=86  Identities=27%  Similarity=0.444  Sum_probs=75.5

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      .+|++.+.+. ..++||.+.++.+ ..+++|..|.+++||+++| |++||+|++|||+++.++++++++.+++..++.+.
T Consensus         6 ~~r~v~l~k~-~~g~G~~l~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~   82 (102)
T 2d90_A            6 SGRVVVIKKG-SNGYGFYLRAGPE-QKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTT   82 (102)
T ss_dssp             SSEEEEEECC-SSSSSCEEEECSS-SSSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTEEE
T ss_pred             CCEEEEEeeC-CCCccEEEEeecC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEE
Confidence            5788999885 5689999987533 4689999999999999998 99999999999999999999999999998889999


Q ss_pred             EEEEEeccc
Q psy4897         254 LEVKYLREV  262 (774)
Q Consensus       254 L~V~R~~~~  262 (774)
                      |+|.|....
T Consensus        83 l~v~r~~~~   91 (102)
T 2d90_A           83 LLVLDKEAE   91 (102)
T ss_dssp             EEECSTTCC
T ss_pred             EEEEECCCc
Confidence            999876543

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.13  E-value=2.7e-10  Score=103.26  Aligned_cols=88  Identities=31%  Similarity=0.480  Sum_probs=77.2

Q ss_pred             cceEEEEEeccCCCCcceEEe-----CCCCC---CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHH
Q psy4897         173 NQKRIIRVKKSENNGLGISIK-----GGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA  244 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~-----gg~~~---~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~  244 (774)
                      .+.+.+.+.+. ..+|||.+.     ++.+.   ..+++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+
T Consensus         8 ~~~~~v~l~k~-~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   86 (108)
T 1q7x_A            8 GDIFEVELAKN-DNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVET   86 (108)
T ss_dssp             SSEEEEEEESS-SCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHH
T ss_pred             CcEEEEEEEEC-CCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            35778888875 578999998     65442   4689999999999999998899999999999999999899999999


Q ss_pred             HHHcCcceEEEEEEecc
Q psy4897         245 LKRAGKLVELEVKYLRE  261 (774)
Q Consensus       245 Lk~~g~~V~L~V~R~~~  261 (774)
                      ++..++.+.|+|.|.+.
T Consensus        87 ~~~~g~~v~l~v~R~~~  103 (108)
T 1q7x_A           87 LRNTGQVVHLLLEKGQS  103 (108)
T ss_dssp             HHHTTSEEEEEEECCCC
T ss_pred             HHcCCCeEEEEEEeCCc
Confidence            99999999999988654

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.12  E-value=3.8e-10  Score=106.37  Aligned_cols=77  Identities=32%  Similarity=0.427  Sum_probs=68.4

Q ss_pred             CCCCcceEEeCCCCC---CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc--CcceEEEEEE
Q psy4897         184 ENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GKLVELEVKY  258 (774)
Q Consensus       184 ~~~~LGfsi~gg~~~---~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~--g~~V~L~V~R  258 (774)
                      ...+|||.+.++.+.   ..+++|..|.+++||+++|+|++||+|++|||+++.++++++++++|+..  ++.|.|+|.|
T Consensus        46 ~~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R  125 (131)
T 1wfg_A           46 SGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSR  125 (131)
T ss_dssp             SCTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEE
T ss_pred             CCCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEc
Confidence            577899999886543   34899999999999999988999999999999999999999999999985  4889999988


Q ss_pred             ec
Q psy4897         259 LR  260 (774)
Q Consensus       259 ~~  260 (774)
                      ..
T Consensus       126 ~g  127 (131)
T 1wfg_A          126 SG  127 (131)
T ss_dssp             EC
T ss_pred             CC
Confidence            64

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.12  E-value=1e-10  Score=105.21  Aligned_cols=85  Identities=25%  Similarity=0.403  Sum_probs=74.8

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      +...+.+.  ...+|||.+.++.+...+++|..|.+++||+++| |++||+|++|||+++.++++.+++.+++..++.+.
T Consensus         5 ~~~~v~l~--~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~   81 (103)
T 1wf7_A            5 SSGSVSLV--GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLN   81 (103)
T ss_dssp             CCEEEEEE--SSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEE
T ss_pred             CEEEEEEe--CCCccCEEEeccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            35566666  3578999999887767789999999999999998 99999999999999999999999999998888999


Q ss_pred             EEEEEecc
Q psy4897         254 LEVKYLRE  261 (774)
Q Consensus       254 L~V~R~~~  261 (774)
                      |+|.|...
T Consensus        82 l~v~R~g~   89 (103)
T 1wf7_A           82 MTLQRASA   89 (103)
T ss_dssp             EEECCCSC
T ss_pred             EEEEeCCC
Confidence            99987654

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.12  E-value=2.1e-10  Score=104.21  Aligned_cols=82  Identities=23%  Similarity=0.315  Sum_probs=72.8

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEE
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVEL  254 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L  254 (774)
                      ...+.+.+....++||.+.+.   ..+++|..|.++|||+++|+|++||+|++|||++|.+.++.++..+++..++.+.|
T Consensus         3 ~~~v~L~k~~~~glG~~i~~~---~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l   79 (106)
T 2la8_A            3 KFNVDLMKKAGKELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSM   79 (106)
T ss_dssp             EEEEEECCBSSSTTCCEEEEC---SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEEE
T ss_pred             EEEEEEEeCCCCccCEEEEeC---CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEE
Confidence            456778777788999998762   46899999999999999988999999999999999999999999999988889999


Q ss_pred             EEEEe
Q psy4897         255 EVKYL  259 (774)
Q Consensus       255 ~V~R~  259 (774)
                      +|.|.
T Consensus        80 ~v~R~   84 (106)
T 2la8_A           80 EVTRP   84 (106)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99874

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.12  E-value=3e-10  Score=101.04  Aligned_cols=83  Identities=23%  Similarity=0.320  Sum_probs=73.1

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      ....+.+.+....++||.+.+.   ..+++|..|.+++||+++|+|++||+|++|||+++.++++.+++.+++..++.+.
T Consensus         8 ~~~~v~l~~~~~~glG~~~~~~---~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~v~   84 (96)
T 2qkv_A            8 EKFNVDLMKKAGKELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVS   84 (96)
T ss_dssp             CCEEEEEECBTTBCCCEEEEEC---SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEE
T ss_pred             ceEEEEEEeCCCCCccEEEEeC---CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEE
Confidence            4567788776678899998762   4689999999999999998899999999999999999999999999999888999


Q ss_pred             EEEEEe
Q psy4897         254 LEVKYL  259 (774)
Q Consensus       254 L~V~R~  259 (774)
                      |+|.|.
T Consensus        85 l~v~R~   90 (96)
T 2qkv_A           85 MEVTRP   90 (96)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            999874

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.12  E-value=4.3e-10  Score=100.23  Aligned_cols=82  Identities=21%  Similarity=0.325  Sum_probs=69.2

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc--C
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--G   95 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a--g   95 (774)
                      ..+.+++.+.+ ...+|||+|.+.   ..|++|..|.++  |+++| |++||+|++|||++|.+++|.+++.+++..  +
T Consensus         8 ~~~~~~v~l~~-~~~g~G~~i~~~---~~Gv~V~~v~~~--a~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g   80 (96)
T 1ujv_A            8 QAELMTLTIVK-GAQGFGFTIADS---PTGQRVKQILDI--QGCPG-LCEGDLIVEINQQNVQNLSHTEVVDILKDCPIG   80 (96)
T ss_dssp             CCCCEEEEEEC-CSSSSSEEEEEE---TTEEEEEEESCG--GGSTT-CCSSCEEEEETTEECSSCCHHHHHHHHHHSCTT
T ss_pred             CceEEEEEEEe-CCCceeEEEEcC---CCCEEEEEEecc--cccCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCC
Confidence            45677888865 558999999743   347999999984  66766 999999999999999999999999999984  7


Q ss_pred             ceEEEEeeecc
Q psy4897          96 KVVELEVGVGY  106 (774)
Q Consensus        96 ~~V~L~V~R~~  106 (774)
                      +.|.|+|.|+.
T Consensus        81 ~~v~l~v~R~g   91 (96)
T 1ujv_A           81 SETSLIIHRGS   91 (96)
T ss_dssp             SEEEEEEECCS
T ss_pred             CEEEEEEEECC
Confidence            89999998865

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=1.4e-10  Score=102.26  Aligned_cols=82  Identities=24%  Similarity=0.358  Sum_probs=72.3

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      ..|+|.+.|....+|||.+.+.   ..+++|..|.+++||+++|.|++||+|++|||+++ +.+++++.++|+..++.+.
T Consensus         6 ~~r~v~l~k~~~~~lG~~i~~~---~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~v~   81 (91)
T 2e7k_A            6 SGRMVGIRKTAGEHLGVTFRVE---GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSVI   81 (91)
T ss_dssp             CSCBCCBCCCTTCCCCEEEEES---SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSSBC
T ss_pred             CcEEEEEEECCCCcEeEEEEec---CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCeEE
Confidence            3567777777778999999873   46899999999999999877999999999999999 7889999999998888999


Q ss_pred             EEEEEe
Q psy4897         254 LEVKYL  259 (774)
Q Consensus       254 L~V~R~  259 (774)
                      |+|.|.
T Consensus        82 l~v~~~   87 (91)
T 2e7k_A           82 LKILSG   87 (91)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            998764

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.11  E-value=3.1e-10  Score=111.88  Aligned_cols=85  Identities=27%  Similarity=0.423  Sum_probs=74.0

Q ss_pred             ceEEEEEeccCCCCcceEEeC---CCC---CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH
Q psy4897         174 QKRIIRVKKSENNGLGISIKG---GKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR  247 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~g---g~~---~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~  247 (774)
                      +...+.+.+.. .+|||++.+   +.+   ...+++|..|.+++||+++|+|++||+|++|||++|.++++.+++.+|+.
T Consensus        80 ~~~~v~l~k~~-~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~  158 (170)
T 3egg_C           80 ELFPVELEKDS-EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN  158 (170)
T ss_dssp             EEEEEEEECBT-TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHH
T ss_pred             eEEEEEEEeCC-CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            45667787754 689999988   322   13679999999999999998899999999999999999999999999999


Q ss_pred             cCcceEEEEEEe
Q psy4897         248 AGKLVELEVKYL  259 (774)
Q Consensus       248 ~g~~V~L~V~R~  259 (774)
                      ++..|.|+|.|.
T Consensus       159 ~g~~v~L~V~R~  170 (170)
T 3egg_C          159 TKGRVRFMIGRE  170 (170)
T ss_dssp             CCSEEEEEEEEC
T ss_pred             CCCEEEEEEEeC
Confidence            999999999873

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.11  E-value=4.8e-10  Score=100.58  Aligned_cols=86  Identities=20%  Similarity=0.323  Sum_probs=72.4

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCC--CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cC
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKE--NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AG  249 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~--~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g  249 (774)
                      ..+.+.+.+....+|||.+.....  ...+++|..|.+++||+++++|++||+|++|||+++.+.++++++++|+.  .+
T Consensus         9 ~~~~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g   88 (101)
T 2yt7_A            9 NCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQ   88 (101)
T ss_dssp             CCEEEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTS
T ss_pred             ceEEEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            467788887766799999975211  12369999999999999976699999999999999988889999999998  78


Q ss_pred             cceEEEEEEe
Q psy4897         250 KLVELEVKYL  259 (774)
Q Consensus       250 ~~V~L~V~R~  259 (774)
                      ..++|+|.|.
T Consensus        89 ~~v~l~v~R~   98 (101)
T 2yt7_A           89 TSVTLSIVHC   98 (101)
T ss_dssp             SEEEEEECCC
T ss_pred             CeEEEEEEeC
Confidence            8999999764

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.11  E-value=1e-10  Score=100.80  Aligned_cols=80  Identities=26%  Similarity=0.511  Sum_probs=71.1

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      +++.+.+.+. ..++||.+.+.    .+++|..|.+++||+++| |++||+|++|||+++.++++++++.+++..++.+.
T Consensus         2 ~~r~v~l~~~-~~g~G~~~~~~----~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~   75 (83)
T 2kv8_A            2 RVRSVEVARG-RAGYGFTLSGQ----APCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLH   75 (83)
T ss_dssp             CEEEEEECCC-SSCCSCBCCCS----SSCBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEE
T ss_pred             CcEEEEEEeC-CCcccEEEEcC----CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            4688899886 47899988763    479999999999999998 99999999999999999999999999988778899


Q ss_pred             EEEEEe
Q psy4897         254 LEVKYL  259 (774)
Q Consensus       254 L~V~R~  259 (774)
                      |+|.|.
T Consensus        76 l~v~R~   81 (83)
T 2kv8_A           76 MVIAEG   81 (83)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999875

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.11  E-value=2.2e-10  Score=115.01  Aligned_cols=83  Identities=20%  Similarity=0.285  Sum_probs=72.5

Q ss_pred             cEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEE
Q psy4897          21 FYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVEL  100 (774)
Q Consensus        21 ~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L  100 (774)
                      .+++.+.+....+|||++.++   ..|++|.+|.++|||+++|+|++||+|++|||++|.++++.+++.+++.++..+.|
T Consensus       114 ~~~v~l~~~~~~~lG~~~~~~---~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L  190 (206)
T 3r0h_A          114 KFNVDLMKKAGKELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSM  190 (206)
T ss_dssp             EEEEEEECCTTCCCCEEEEEC---SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEE
T ss_pred             EEEEEEecCCCCccCeEEEcC---CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            344555555667999999854   35899999999999999988999999999999999999999999999999999999


Q ss_pred             Eeeecc
Q psy4897         101 EVGVGY  106 (774)
Q Consensus       101 ~V~R~~  106 (774)
                      +|.|..
T Consensus       191 ~V~R~~  196 (206)
T 3r0h_A          191 EVTRPK  196 (206)
T ss_dssp             EEEEEC
T ss_pred             EEEeCC
Confidence            998864

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.10  E-value=4.6e-10  Score=104.70  Aligned_cols=88  Identities=34%  Similarity=0.551  Sum_probs=76.3

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCC---------CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHH
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKE---------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA  244 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~---------~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~  244 (774)
                      .++.+.+.+.....|||.+.++.+         ...+++|..|.++|||+++|.|++||+|++|||+++.++++++++++
T Consensus        24 ~p~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~  103 (123)
T 2iwq_A           24 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA  103 (123)
T ss_dssp             CCEEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCEEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            467888888777889999976432         12579999999999999997799999999999999999999999999


Q ss_pred             HHHcCcceEEEEEEecc
Q psy4897         245 LKRAGKLVELEVKYLRE  261 (774)
Q Consensus       245 Lk~~g~~V~L~V~R~~~  261 (774)
                      |+..++.+.|+|.|.+.
T Consensus       104 l~~~~~~v~l~v~r~~~  120 (123)
T 2iwq_A          104 IRKAGNPVVFMVQSIIS  120 (123)
T ss_dssp             HHHCCSSEEEEEECCCC
T ss_pred             HHcCCCeEEEEEEECCc
Confidence            99988899999988654

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=2.3e-10  Score=103.21  Aligned_cols=85  Identities=26%  Similarity=0.387  Sum_probs=75.1

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      .+|++.+.+ ...+|||.+.+... ..+++|..|.+++||+++| |++||+|++|||+++.++++.+++.+++..++.+.
T Consensus         8 ~~r~v~l~k-~~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   84 (106)
T 2eei_A            8 QPRLCYLVK-EGGSYGFSLKTVQG-KKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVM   84 (106)
T ss_dssp             SSEEEEEEC-CSSSCSCCEECCSS-CCSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHHCSEEE
T ss_pred             CCEEEEEEE-CCCCCCEEEEeccC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            578899988 47899999976532 4689999999999999998 99999999999999999999999999998888999


Q ss_pred             EEEEEecc
Q psy4897         254 LEVKYLRE  261 (774)
Q Consensus       254 L~V~R~~~  261 (774)
                      |+|.|...
T Consensus        85 l~v~r~~~   92 (106)
T 2eei_A           85 FLLVDKET   92 (106)
T ss_dssp             EEECCTTT
T ss_pred             EEEEcCch
Confidence            99987544

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.10  E-value=4.5e-10  Score=95.67  Aligned_cols=75  Identities=19%  Similarity=0.291  Sum_probs=65.4

Q ss_pred             EEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeee
Q psy4897          25 NYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGV  104 (774)
Q Consensus        25 ~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R  104 (774)
                      .+.......|||.+.      .|++|..|.++|||+++|.|++||+|++|||+++.++++.++..+++..+..+.|+|.|
T Consensus         6 ~~~~~~~~~~g~~~~------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R   79 (81)
T 2rcz_A            6 LVKSRKNEEYGLRLA------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQR   79 (81)
T ss_dssp             EECCSTTCCCCEEEE------EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEC
T ss_pred             EEECCCCCCCCEEEe------CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEEEe
Confidence            444556789999887      36999999999999999779999999999999999999999999999887788999876


Q ss_pred             c
Q psy4897         105 G  105 (774)
Q Consensus       105 ~  105 (774)
                      +
T Consensus        80 ~   80 (81)
T 2rcz_A           80 D   80 (81)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.10  E-value=3.3e-10  Score=103.46  Aligned_cols=87  Identities=28%  Similarity=0.432  Sum_probs=75.4

Q ss_pred             ceEEEEEeccCCCCcceEEeC---CCC---CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH
Q psy4897         174 QKRIIRVKKSENNGLGISIKG---GKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR  247 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~g---g~~---~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~  247 (774)
                      +.+.+.+.+. ..+|||++.+   +.+   ...+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++.
T Consensus         4 ~~~~v~l~k~-~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   82 (113)
T 2g5m_B            4 ELFPVELEKD-SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN   82 (113)
T ss_dssp             EEEEEECCCC-SSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHH
T ss_pred             EEEEEEEEeC-CCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            3566777764 5789999987   332   24689999999999999998899999999999999999999999999999


Q ss_pred             cCcceEEEEEEecc
Q psy4897         248 AGKLVELEVKYLRE  261 (774)
Q Consensus       248 ~g~~V~L~V~R~~~  261 (774)
                      .++.+.|+|.|.+.
T Consensus        83 ~g~~v~l~v~R~~~   96 (113)
T 2g5m_B           83 TKGRVRFMIGRERP   96 (113)
T ss_dssp             SCSSCEEEEEECCC
T ss_pred             CCCeEEEEEEeCCC
Confidence            99999999998765

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=99.09  E-value=5.5e-10  Score=104.20  Aligned_cols=85  Identities=20%  Similarity=0.210  Sum_probs=71.7

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc-Cce
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA-GKV   97 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a-g~~   97 (774)
                      ...+.+.+.+ ...+|||+|.++.+. .+++|..|.++|||+++| |++||+|++|||+++.++++.++..+++.. +..
T Consensus         8 ~~~r~v~l~~-~~~g~G~~l~~~~~~-~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~   84 (128)
T 2kjd_A            8 LRPRLCTMKK-GPSGYGFNLHSDKSK-PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDET   84 (128)
T ss_dssp             CCCEEEEEEC-CSSSCCEEEEECSSS-CSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEE
T ss_pred             CCcEEEEEec-CCCcccEEEEecCCC-CCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCE
Confidence            3456666655 457899999987543 489999999999999998 999999999999999999999999999886 556


Q ss_pred             EEEEeeecc
Q psy4897          98 VELEVGVGY  106 (774)
Q Consensus        98 V~L~V~R~~  106 (774)
                      +.|+|.|+.
T Consensus        85 ~~l~v~R~g   93 (128)
T 2kjd_A           85 KLLVVDRET   93 (128)
T ss_dssp             EEEEECHHH
T ss_pred             EEEEEEeCC
Confidence            778888765

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.09  E-value=3.9e-10  Score=101.28  Aligned_cols=83  Identities=31%  Similarity=0.398  Sum_probs=72.4

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCC--------CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHH
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKE--------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA  244 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~--------~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~  244 (774)
                      .+...+.+.+.  .+|||++.++.+        ...+++|..|.+++||++ | |++||+|++|||+++.++++.+++..
T Consensus        10 ~~~~~v~l~~~--~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~   85 (103)
T 1n7t_A           10 KQEIRVRVEKD--PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSL   85 (103)
T ss_dssp             CCCEEEEEECS--SCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEETTEECSSCCHHHHHHH
T ss_pred             cEEEEEEEccC--CCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEECCEECCCCCHHHHHHH
Confidence            34566777774  489999998653        356899999999999999 7 99999999999999999999999999


Q ss_pred             HHHcCcceEEEEEEe
Q psy4897         245 LKRAGKLVELEVKYL  259 (774)
Q Consensus       245 Lk~~g~~V~L~V~R~  259 (774)
                      ++..++.+.|+|.|.
T Consensus        86 ~~~~g~~v~l~v~R~  100 (103)
T 1n7t_A           86 LKTFQNTVELIIVRE  100 (103)
T ss_dssp             HHHCCSEEEEEEECC
T ss_pred             hhcCCCeEEEEEEec
Confidence            999899999999875

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.09  E-value=1.3e-10  Score=104.19  Aligned_cols=87  Identities=31%  Similarity=0.525  Sum_probs=74.9

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      ....+.+.+. ..++||.+.++.+...+++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++..++.+.
T Consensus        11 ~~~~v~l~~~-~~g~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~   89 (103)
T 1wfv_A           11 DYFTVDMEKG-AKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVR   89 (103)
T ss_dssp             CCEECCEECC-TTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEEC
T ss_pred             eEEEEEEecC-CCcCCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            3455666664 467999998876656689999999999999997799999999999999999999999999998889999


Q ss_pred             EEEEEecc
Q psy4897         254 LEVKYLRE  261 (774)
Q Consensus       254 L~V~R~~~  261 (774)
                      |+|.|...
T Consensus        90 l~v~R~~~   97 (103)
T 1wfv_A           90 LLLKRGTG   97 (103)
T ss_dssp             EEEECTTC
T ss_pred             EEEEECCC
Confidence            99988654

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.09  E-value=1.4e-10  Score=105.63  Aligned_cols=93  Identities=42%  Similarity=0.591  Sum_probs=80.1

Q ss_pred             ccccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcC
Q psy4897         170 SVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG  249 (774)
Q Consensus       170 ~~~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g  249 (774)
                      .....++.+.+.+. ..+|||.+.++.+ ..+++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++..+
T Consensus        11 ~~~~~~~~v~l~k~-~~glG~~l~~~~~-~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~   88 (113)
T 1um7_A           11 GDAREPRKIILHKG-STGLGFNIVGGED-GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAG   88 (113)
T ss_dssp             CCCCSEEEEEEECC-SSCSSBCCBCCST-TCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCC
T ss_pred             cCCCceEEEEEEEC-CCcccEEEEeccC-CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            34456889999885 5789999987643 468999999999999999779999999999999999999999999999888


Q ss_pred             cceEEEEEEeccccc
Q psy4897         250 KLVELEVKYLREVTP  264 (774)
Q Consensus       250 ~~V~L~V~R~~~~~~  264 (774)
                      +.+.|+|.|.+..+.
T Consensus        89 ~~v~l~v~r~~~~~~  103 (113)
T 1um7_A           89 QSVTIVAQYRPEEYS  103 (113)
T ss_dssp             SEEEEEEECCHHHHH
T ss_pred             CcEEEEEEECcchhh
Confidence            999999998765443

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.09  E-value=4.1e-10  Score=103.26  Aligned_cols=88  Identities=40%  Similarity=0.628  Sum_probs=76.0

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCC-CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcce
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENK-MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLV  252 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~-~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V  252 (774)
                      +.+.+.+.+. ..+|||.+.++.+.. .+++|..|.+++||+++|.|++||+|++|||++|.++++.+++.+++..+..+
T Consensus        17 ~~~~v~l~~~-~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v   95 (116)
T 2dm8_A           17 QEMIIEISKG-RSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKV   95 (116)
T ss_dssp             SCEEEEEECC-SSCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCSEE
T ss_pred             CEEEEEEEEC-CCcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            3567777764 678999998875543 58999999999999999779999999999999999999999999999888899


Q ss_pred             EEEEEEeccc
Q psy4897         253 ELEVKYLREV  262 (774)
Q Consensus       253 ~L~V~R~~~~  262 (774)
                      .|+|.|....
T Consensus        96 ~l~v~R~~~~  105 (116)
T 2dm8_A           96 RLVVYRDEAH  105 (116)
T ss_dssp             EEEEECCSSC
T ss_pred             EEEEEeCCcc
Confidence            9999886553

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.09  E-value=2.3e-10  Score=114.51  Aligned_cols=87  Identities=31%  Similarity=0.562  Sum_probs=79.4

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcce
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLV  252 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V  252 (774)
                      ...+.+.+.+....+|||.+.++.+...+++|..|.++|||+++| |++||+|++|||++|.++++++++.+|+. ++.+
T Consensus        83 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~v  160 (192)
T 3k1r_A           83 RKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRT-EKTV  160 (192)
T ss_dssp             SSCEEEEEETTSTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHTS-SSEE
T ss_pred             CceEEEEEEeCCCCceeEEEEcccccCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHcC-CCeE
Confidence            357889999987889999999876666789999999999999998 99999999999999999999999999988 8999


Q ss_pred             EEEEEEecc
Q psy4897         253 ELEVKYLRE  261 (774)
Q Consensus       253 ~L~V~R~~~  261 (774)
                      .|+|.|.+.
T Consensus       161 ~l~v~r~g~  169 (192)
T 3k1r_A          161 SIKVRHIGL  169 (192)
T ss_dssp             EEEEEECCE
T ss_pred             EEEEEECCc
Confidence            999998765

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=1.5e-10  Score=103.67  Aligned_cols=86  Identities=26%  Similarity=0.405  Sum_probs=73.3

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEE
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVEL  254 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L  254 (774)
                      .+.+.+......+|||.+.++.+...+++|..|.+++||+++|+|++||+|++|||+++.+. +.+++.+++..++.+.|
T Consensus        10 ~~~~~v~~~~~~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~~v~l   88 (100)
T 2edp_A           10 FQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSFRILKL   88 (100)
T ss_dssp             CEEEEEECCSCSCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCCSSCEE
T ss_pred             cEEEEEEECCCCCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCCCeEEE
Confidence            45555555556789999998766567899999999999999944999999999999999986 88999999988899999


Q ss_pred             EEEEecc
Q psy4897         255 EVKYLRE  261 (774)
Q Consensus       255 ~V~R~~~  261 (774)
                      +|.|...
T Consensus        89 ~v~R~~~   95 (100)
T 2edp_A           89 IVRRRNS   95 (100)
T ss_dssp             EEEECCC
T ss_pred             EEEeCCC
Confidence            9998754

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.08  E-value=4.9e-10  Score=103.62  Aligned_cols=84  Identities=30%  Similarity=0.553  Sum_probs=71.5

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCC-CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc----
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENK-MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA----  248 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~-~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~----  248 (774)
                      ..+.+.+.+.  .+|||++.++.+.. .+++|.+|.+++||+++|+|++||+|++|||+++.+++|++++++|+..    
T Consensus        18 ~~~~~~~~~~--~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~   95 (118)
T 1v6b_A           18 DVRLLRIKKE--GSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQG   95 (118)
T ss_dssp             CEEEEEEESC--SCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHT
T ss_pred             eEEEEEECCC--CccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcC
Confidence            3566666664  58999999876543 4599999999999999955999999999999999999999999999864    


Q ss_pred             CcceEEEEEEe
Q psy4897         249 GKLVELEVKYL  259 (774)
Q Consensus       249 g~~V~L~V~R~  259 (774)
                      +..++|+|.|.
T Consensus        96 g~~v~l~v~r~  106 (118)
T 1v6b_A           96 GDWIDLVVAVC  106 (118)
T ss_dssp             CSEEEEEEECC
T ss_pred             CCeEEEEEEeC
Confidence            78999999874

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.08  E-value=4.7e-10  Score=103.38  Aligned_cols=93  Identities=41%  Similarity=0.596  Sum_probs=79.5

Q ss_pred             cccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897         171 VENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK  250 (774)
Q Consensus       171 ~~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~  250 (774)
                      .....+.+.+.+. ..+|||.+.++.+ ..+++|..|.+++||+++|.|++||+|++|||+++.++++.+++..++..++
T Consensus        11 ~~~~~~~v~l~k~-~~glG~~l~~~~~-~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   88 (119)
T 1tp5_A           11 IPREPRRIVIHRG-STGLGFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQ   88 (119)
T ss_dssp             CCCSCEEEEEECT-TSCCCEEEEECGG-GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCS
T ss_pred             CCCccEEEEEEEC-CCCccEEEecCCC-CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            3446788999885 4679999987643 3689999999999999997799999999999999999999999999998899


Q ss_pred             ceEEEEEEecccccc
Q psy4897         251 LVELEVKYLREVTPY  265 (774)
Q Consensus       251 ~V~L~V~R~~~~~~~  265 (774)
                      .+.|+|.|.+.....
T Consensus        89 ~v~l~v~r~~~~~~~  103 (119)
T 1tp5_A           89 TVTIIAQYKPEEYSR  103 (119)
T ss_dssp             EEEEEEEECHHHHHT
T ss_pred             eEEEEEEECCchhcc
Confidence            999999987655433

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.08  E-value=7.6e-10  Score=97.72  Aligned_cols=81  Identities=28%  Similarity=0.455  Sum_probs=71.2

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      ..|++.+.+. ..+|||.+.+.    .+++|..|.+++||+++| |++||+|++|||+++.++++.+++..++ .++.+.
T Consensus         8 ~~r~v~l~~~-~~~~G~~l~~~----~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~-~g~~v~   80 (93)
T 2dls_A            8 VQRCVIIQKD-QHGFGFTVSGD----RIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAYVA   80 (93)
T ss_dssp             CEEEEEEECS-SSSCCEEEECS----SSCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHT-SSSEEE
T ss_pred             CCEEEEEEeC-CCceeEEEeCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhc-CCCEEE
Confidence            5788888875 57899999763    579999999999999998 9999999999999999999998888887 589999


Q ss_pred             EEEEEecc
Q psy4897         254 LEVKYLRE  261 (774)
Q Consensus       254 L~V~R~~~  261 (774)
                      |+|.|...
T Consensus        81 l~v~R~~~   88 (93)
T 2dls_A           81 LTLLGSSS   88 (93)
T ss_dssp             EEEECCCC
T ss_pred             EEEEECCC
Confidence            99988654

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.07  E-value=3.8e-10  Score=103.39  Aligned_cols=87  Identities=25%  Similarity=0.338  Sum_probs=77.4

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      .++.+.+.+.....|||.+..+.. ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++++++..++.+.
T Consensus        13 dp~~~~l~~~~~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~   90 (114)
T 2edz_A           13 NPRECKLSKQEGQNYGFFLRIEKD-TDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVT   90 (114)
T ss_dssp             CCEEEEEECCTTCCCSCEEECCTT-CCSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSEEE
T ss_pred             CCEEEEEeCCCCCcccEEEEEecC-CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEE
Confidence            478888988878899999886533 4689999999999999998 99999999999999999999999999998899999


Q ss_pred             EEEEEeccc
Q psy4897         254 LEVKYLREV  262 (774)
Q Consensus       254 L~V~R~~~~  262 (774)
                      |+|.|..+.
T Consensus        91 l~v~R~~~~   99 (114)
T 2edz_A           91 LLVLDGDSY   99 (114)
T ss_dssp             EEEECHHHH
T ss_pred             EEEEECCcc
Confidence            999987654

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.07  E-value=7.4e-10  Score=97.01  Aligned_cols=80  Identities=16%  Similarity=0.236  Sum_probs=67.8

Q ss_pred             cEEEEEEee-cCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897          21 FYSENYKYT-ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE   99 (774)
Q Consensus        21 ~~~V~l~rk-~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~   99 (774)
                      .++|.+... ....|||.+.      .|++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++..+..+.
T Consensus         3 ~~~v~~~~~~~~~~~g~~~~------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~   76 (92)
T 3cyy_A            3 PTKVTLVKSAKNEEYGLRLA------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLK   76 (92)
T ss_dssp             CEEEEEECSSTTSCCCEEEE------EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEE
T ss_pred             cEEEEEEeCCCCCCCCEEEe------CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEE
Confidence            345666554 3479999886      479999999999999997799999999999999999999999999998888999


Q ss_pred             EEeeecc
Q psy4897         100 LEVGVGY  106 (774)
Q Consensus       100 L~V~R~~  106 (774)
                      |+|.|++
T Consensus        77 l~v~r~g   83 (92)
T 3cyy_A           77 MVVQRDE   83 (92)
T ss_dssp             EEEEC--
T ss_pred             EEEEeCC
Confidence            9998865

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.06  E-value=1.9e-10  Score=107.44  Aligned_cols=87  Identities=29%  Similarity=0.384  Sum_probs=76.5

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCC-CCCCEEEEECCEecCCCCHHHHHHHHHhc-C
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQL-YVGDAILSVNGEDLREATHDEAVKALKRA-G   95 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~L-qvGD~ILsVNG~~V~~~sh~eaV~lLk~a-g   95 (774)
                      +.++++|.+.+....+|||++.++.+ ..+++|..|.++|||+++| | ++||+|++|||+++.++++.++..+++.. +
T Consensus         6 ~~~~~~v~l~~~~~~glG~~~~~~~~-~~~~~V~~V~~~spA~~aG-ll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g   83 (127)
T 1b8q_A            6 EPNVISVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSG-LIQAGDIILAVNDRPLVDLSYDSALEVLRGIAS   83 (127)
T ss_dssp             CCCSEEEEEECTTTSCCSCCEEECTT-SSCEEECCCSSSSSHHHHS-SCCTTTCCCEETTEECSSSCHHHHHHHHHSCCS
T ss_pred             CCceEEEEEEeCCCCcEeEEEEecCC-CCCEEEEEeCCCCHHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            45688899988777899999987643 3589999999999999998 6 99999999999999999999999999874 6


Q ss_pred             ceEEEEeeecc
Q psy4897          96 KVVELEVGVGY  106 (774)
Q Consensus        96 ~~V~L~V~R~~  106 (774)
                      +.+.|+|.|+.
T Consensus        84 ~~v~l~v~R~g   94 (127)
T 1b8q_A           84 ETHVVLILRGP   94 (127)
T ss_dssp             SCEEEEEECCC
T ss_pred             CeEEEEEEeCC
Confidence            78999998865

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.06  E-value=7.5e-10  Score=101.26  Aligned_cols=86  Identities=31%  Similarity=0.476  Sum_probs=75.4

Q ss_pred             ccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcc
Q psy4897         172 ENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKL  251 (774)
Q Consensus       172 ~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~  251 (774)
                      ....+.+.+.+....+|||.+.++.+...+++|..|.+++||+++| |++||+|++|||+++.++++.+++.+++.. +.
T Consensus        13 ~~~~~~v~~~~~~~~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~   90 (114)
T 1x5n_A           13 ENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RS   90 (114)
T ss_dssp             CCSSEEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHC-SS
T ss_pred             CCCcEEEEEEEcCCCceeEEEeecCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-Ce
Confidence            3456788887777889999999876666799999999999999998 999999999999999999988899988875 68


Q ss_pred             eEEEEEEe
Q psy4897         252 VELEVKYL  259 (774)
Q Consensus       252 V~L~V~R~  259 (774)
                      +.|+|.|.
T Consensus        91 v~l~v~r~   98 (114)
T 1x5n_A           91 LTISIVAA   98 (114)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEEcC
Confidence            88998775

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.06  E-value=1.5e-09  Score=98.60  Aligned_cols=87  Identities=33%  Similarity=0.446  Sum_probs=73.9

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC---CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc--
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--  248 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~---~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~--  248 (774)
                      ....+.+.+. ..++||.+.++.+.   ..+++|..|.+++||+++|.|++||+|++|||+++.++++++++++|+..  
T Consensus        11 ~~~~~~l~~~-~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   89 (111)
T 2koj_A           11 KRLNIQLKKG-TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKM   89 (111)
T ss_dssp             EEEEEEEECB-TTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCC
T ss_pred             cEEEEEEEEC-CCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            4566667664 57899999876432   26899999999999999977999999999999999999999999999984  


Q ss_pred             CcceEEEEEEecc
Q psy4897         249 GKLVELEVKYLRE  261 (774)
Q Consensus       249 g~~V~L~V~R~~~  261 (774)
                      +..+.|+|.|.+.
T Consensus        90 g~~v~l~v~R~~~  102 (111)
T 2koj_A           90 EGTVSLLVFRQEE  102 (111)
T ss_dssp             SSEEEEEEEECCC
T ss_pred             CCeEEEEEEeCCC
Confidence            7899999988654

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=99.06  E-value=4.7e-10  Score=101.02  Aligned_cols=82  Identities=27%  Similarity=0.440  Sum_probs=70.2

Q ss_pred             ceEEEEEeccCCCCcceEEeCC-------CCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy4897         174 QKRIIRVKKSENNGLGISIKGG-------KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK  246 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg-------~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk  246 (774)
                      ..+.+.+.+...++|||.+.+.       .....+++|..|.+++||+++| |++||+|++|||+++.++++++++++|+
T Consensus        15 ~~~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~   93 (104)
T 2z17_A           15 QRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIR   93 (104)
T ss_dssp             CCCEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHH
Confidence            4566778887678899999872       1234689999999999999998 9999999999999999888999999999


Q ss_pred             HcCcceEEEE
Q psy4897         247 RAGKLVELEV  256 (774)
Q Consensus       247 ~~g~~V~L~V  256 (774)
                      ..++.+.|+|
T Consensus        94 ~~~~~v~l~v  103 (104)
T 2z17_A           94 SSGNLLTIET  103 (104)
T ss_dssp             HTTTEEEEEC
T ss_pred             hCCCcEEEEE
Confidence            9777777765

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.05  E-value=7.7e-10  Score=101.23  Aligned_cols=80  Identities=28%  Similarity=0.346  Sum_probs=70.1

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc-ce
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK-LV  252 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~-~V  252 (774)
                      .+|.+.+.+. ..++||.+.+.    .|++|..|.+++||+++| |++||+|++|||+++.++++++++++|+..++ .+
T Consensus        23 ~~r~v~l~k~-~~~~G~~l~~~----~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v   96 (109)
T 2vsv_A           23 MPRSIRFTAE-EGDLGFTLRGN----APVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEI   96 (109)
T ss_dssp             SCEEEEECCG-GGCCCEEEESS----SSCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCE
T ss_pred             CCEEEEEEeC-CCceeEEEeCC----CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeE
Confidence            4788999884 68999998753    578999999999999998 99999999999999998889999999998655 49


Q ss_pred             EEEEEEe
Q psy4897         253 ELEVKYL  259 (774)
Q Consensus       253 ~L~V~R~  259 (774)
                      .|+|.|.
T Consensus        97 ~l~V~~~  103 (109)
T 2vsv_A           97 EMKVVSL  103 (109)
T ss_dssp             EEEEESC
T ss_pred             EEEEEEC
Confidence            9998764

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=99.05  E-value=4.9e-10  Score=126.57  Aligned_cols=81  Identities=23%  Similarity=0.393  Sum_probs=72.8

Q ss_pred             cEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceE
Q psy4897          21 FYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVV   98 (774)
Q Consensus        21 ~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V   98 (774)
                      ++.|.+.+  +.+|||+|.||.+  .|++|..|.+||||+++| |++||+|++|||++|.++++.+++.+|+.  +|+.|
T Consensus         2 ~r~V~l~k--~~~lG~~i~gg~~--~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v   76 (468)
T 3shw_A            2 MKLVKFRK--GDSVGLRLAGGND--VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEV   76 (468)
T ss_dssp             EEEEEEEC--CSSCCEEEEEETT--TEEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEE
T ss_pred             ceEEEEec--CCccceEEEccCc--CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEE
Confidence            45566655  4899999998864  689999999999999998 99999999999999999999999999998  78999


Q ss_pred             EEEeeecc
Q psy4897          99 ELEVGVGY  106 (774)
Q Consensus        99 ~L~V~R~~  106 (774)
                      +|+|.|++
T Consensus        77 ~L~V~r~g   84 (468)
T 3shw_A           77 TILAQKKK   84 (468)
T ss_dssp             EEEEEECH
T ss_pred             EEEEEECC
Confidence            99999865

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.04  E-value=7.6e-10  Score=96.91  Aligned_cols=70  Identities=21%  Similarity=0.307  Sum_probs=63.6

Q ss_pred             CCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEe
Q psy4897         184 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYL  259 (774)
Q Consensus       184 ~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~  259 (774)
                      ....+||.+.+      +++|.+|.+++||+++|+|++||+|++|||+++.+.++++++++|+..++.+.|++.+.
T Consensus        11 ~~~~~G~~~~~------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L~v~~~   80 (88)
T 3e17_A           11 ANEEYGLRLGS------QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRD   80 (88)
T ss_dssp             TBCCCCEEEEE------EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEECCC
T ss_pred             CCCCCCEEEeC------CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEeCC
Confidence            35689998864      69999999999999998899999999999999999999999999999989999998654

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.04  E-value=1.8e-10  Score=105.60  Aligned_cols=81  Identities=26%  Similarity=0.315  Sum_probs=69.3

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCc-eE
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK-VV   98 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~-~V   98 (774)
                      ..++|.+.+ ++.+|||.+.++    .+++|..|.+++||+++| |++||+|++|||++|.++++.+++.+++..+. .+
T Consensus        15 ~~r~v~l~~-~~~~~G~~l~~~----~~v~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v   88 (111)
T 1vae_A           15 PPRGIHFTV-EEGDLGFTLRGN----TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEV   88 (111)
T ss_dssp             CCCCCCEEC-CSSCCSCCEESS----SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEE
T ss_pred             CCeEEEEEc-CCCcccEEEeCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceE
Confidence            445677755 679999999764    478999999999999998 99999999999999999999999999998655 58


Q ss_pred             EEEeeecc
Q psy4897          99 ELEVGVGY  106 (774)
Q Consensus        99 ~L~V~R~~  106 (774)
                      .|+|.|..
T Consensus        89 ~l~V~~~~   96 (111)
T 1vae_A           89 EMKVVSLL   96 (111)
T ss_dssp             CEEEECEE
T ss_pred             EEEEEecC
Confidence            99997754

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=98.61  E-value=2.2e-11  Score=111.90  Aligned_cols=86  Identities=49%  Similarity=0.717  Sum_probs=75.6

Q ss_pred             ccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhh-ccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897         172 ENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQ-TEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK  250 (774)
Q Consensus       172 ~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~-aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~  250 (774)
                      ....+.+.+.+....+|||.+.++.+...+++|..|.++|||++ +| |++||+|++|||+++.+.++++++.+++..++
T Consensus        25 ~~~~~~v~l~k~~~~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aG-L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~  103 (112)
T 2lob_A           25 FQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQRG  103 (112)
Confidence            34567888888777899999998866667899999999999999 66 99999999999999999899999999998877


Q ss_pred             ceEEEEEE
Q psy4897         251 LVELEVKY  258 (774)
Q Consensus       251 ~V~L~V~R  258 (774)
                      .+.|+|.+
T Consensus       104 ~v~l~V~~  111 (112)
T 2lob_A          104 EIEFEVVY  111 (112)
Confidence            88888764

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.03  E-value=2e-09  Score=94.97  Aligned_cols=86  Identities=29%  Similarity=0.452  Sum_probs=72.9

Q ss_pred             eEEEEEeccCCCCcceEEeCCCC----CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKE----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK  250 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~----~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~  250 (774)
                      ...+.+.+ ...++||.+.+...    ...+++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++..+.
T Consensus         5 ~~~v~l~~-~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   83 (97)
T 2iwn_A            5 TFDVELTK-NVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQ   83 (97)
T ss_dssp             EEEEEEEC-BTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCCS
T ss_pred             EEEEEEec-CCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            44566655 36789999987643    24689999999999999997799999999999999999999999999988889


Q ss_pred             ceEEEEEEecc
Q psy4897         251 LVELEVKYLRE  261 (774)
Q Consensus       251 ~V~L~V~R~~~  261 (774)
                      .+.|+|.|.+.
T Consensus        84 ~v~l~v~r~g~   94 (97)
T 2iwn_A           84 TVLLTLMRRGE   94 (97)
T ss_dssp             EEEEEEEEEEE
T ss_pred             eEEEEEEeCCC
Confidence            99999988653

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.03  E-value=1e-09  Score=97.51  Aligned_cols=84  Identities=24%  Similarity=0.330  Sum_probs=70.7

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc-Ccce
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA-GKLV  252 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~-g~~V  252 (774)
                      .++.+.+.+. ..++||.+.++.+ ..+++|..|.++|||+++| |++||+|++|||+++.+++++++.++|+.. +..+
T Consensus         9 ~~~~~~l~~~-~~g~G~~~~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~   85 (98)
T 2jxo_A            9 RPRLCTMKKG-PSGYGFNLHSDKS-KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETK   85 (98)
T ss_dssp             CCEEEEEECT-TTCCCEEEECCCS-SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEE
T ss_pred             CcEEEEEEeC-CCcccEEEEecCC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEE
Confidence            4577788775 5789999987643 3589999999999999998 999999999999999999999999999985 4456


Q ss_pred             EEEEEEec
Q psy4897         253 ELEVKYLR  260 (774)
Q Consensus       253 ~L~V~R~~  260 (774)
                      .|+|.|.+
T Consensus        86 ~l~v~R~g   93 (98)
T 2jxo_A           86 LLVVDRET   93 (98)
T ss_dssp             EEECCHHH
T ss_pred             EEEEECCc
Confidence            68777654

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.02  E-value=1.9e-09  Score=95.13  Aligned_cols=74  Identities=22%  Similarity=0.423  Sum_probs=63.8

Q ss_pred             EEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEE
Q psy4897         177 IIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEV  256 (774)
Q Consensus       177 ~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V  256 (774)
                      .+...+....++||.+.+|       +|.+|.++|||+++| |++||+|++|||+++.+.++++++++|+..++.+.|+|
T Consensus        15 ~~i~~~~~~~~lG~~~~~G-------~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v   86 (90)
T 1y7n_A           15 VLIRRPDLRYQLGFSVQNG-------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKT   86 (90)
T ss_dssp             EEEEESSTTSCCCEEEETT-------EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEE
T ss_pred             EEEEeCCCccccCeEecCC-------EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            3333444577899998643       899999999999998 99999999999999998899999999999889999988


Q ss_pred             EE
Q psy4897         257 KY  258 (774)
Q Consensus       257 ~R  258 (774)
                      .+
T Consensus        87 ~p   88 (90)
T 1y7n_A           87 MP   88 (90)
T ss_dssp             EC
T ss_pred             EE
Confidence            64

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.02  E-value=5.7e-09  Score=97.52  Aligned_cols=88  Identities=33%  Similarity=0.527  Sum_probs=74.5

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      +.+.+.+.......+||.+.++.+...+++|..|.+++||+++| |++||+|++|||+++.++++.++++.++. ++.+.
T Consensus        20 ~~~~v~v~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~v~   97 (128)
T 1uf1_A           20 DEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKS-SRHLI   97 (128)
T ss_dssp             SEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTT-CSEEE
T ss_pred             cEEEEEEEECCCCccCEEEECcccCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHhc-CCeEE
Confidence            45667777655578999998875555689999999999999998 99999999999999999999888888877 46899


Q ss_pred             EEEEEecccc
Q psy4897         254 LEVKYLREVT  263 (774)
Q Consensus       254 L~V~R~~~~~  263 (774)
                      |+|.|.+...
T Consensus        98 l~v~R~g~~~  107 (128)
T 1uf1_A           98 LTVKDVGRLP  107 (128)
T ss_dssp             EEEECCSCCS
T ss_pred             EEEEECCccc
Confidence            9999876643

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.01  E-value=6.2e-10  Score=99.14  Aligned_cols=82  Identities=22%  Similarity=0.359  Sum_probs=69.2

Q ss_pred             EEEeccCCCCcceEEeCCCCC-------CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897         178 IRVKKSENNGLGISIKGGKEN-------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK  250 (774)
Q Consensus       178 V~L~k~~~~~LGfsi~gg~~~-------~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~  250 (774)
                      +.+.+ ...++||.+.++...       ..+++|..|.++|||+++| |++||+|++|||+++.++++++++.+++..++
T Consensus         6 v~l~~-~~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~   83 (99)
T 3khf_A            6 IVIHS-SGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSGN   83 (99)
T ss_dssp             EEEEC--CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHHSCS
T ss_pred             EEEEe-CCCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCC
Confidence            45555 478999999864311       1267899999999999998 99999999999999999999999999999999


Q ss_pred             ceEEEEEEecc
Q psy4897         251 LVELEVKYLRE  261 (774)
Q Consensus       251 ~V~L~V~R~~~  261 (774)
                      .+.|+|.|.+.
T Consensus        84 ~v~l~v~r~~~   94 (99)
T 3khf_A           84 KISLRTTALEN   94 (99)
T ss_dssp             EEEEEEECSCS
T ss_pred             EEEEEEEECCC
Confidence            99999998654

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.01  E-value=3e-09  Score=98.72  Aligned_cols=86  Identities=33%  Similarity=0.432  Sum_probs=72.7

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC---CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc--
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--  248 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~---~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~--  248 (774)
                      +...+.+.+. ..++||.+.++...   ..+++|..|.+++||+++|.|++||+|++|||+++.++++++++++|+..  
T Consensus        30 ~~~~v~l~~~-~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~  108 (121)
T 2kom_A           30 KRLNIQLKKG-TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKM  108 (121)
T ss_dssp             EEEEEEEECC-TTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCS
T ss_pred             eEEEEEEEcC-CCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCC
Confidence            4556666663 57899999876432   26899999999999999977999999999999999999999999999974  


Q ss_pred             CcceEEEEEEec
Q psy4897         249 GKLVELEVKYLR  260 (774)
Q Consensus       249 g~~V~L~V~R~~  260 (774)
                      +..+.|+|.|.+
T Consensus       109 g~~v~l~v~R~g  120 (121)
T 2kom_A          109 EGTVSLLVFRQE  120 (121)
T ss_dssp             SCEEEEEEEECC
T ss_pred             CCEEEEEEEeCC
Confidence            789999998754

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.01  E-value=1.7e-09  Score=94.17  Aligned_cols=83  Identities=23%  Similarity=0.295  Sum_probs=68.5

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKL  251 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~  251 (774)
                      +.+.+++.+. ..++||.+.+..+ ..+++|..| +++||+ +| |++||+|++|||+++.+++++++++++++  .++.
T Consensus         3 ~~~~v~l~k~-~~g~G~~~~~~~~-~~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~   77 (88)
T 3bpu_A            3 ELITVHIVKG-PMGFGFTIADSPG-GGGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSE   77 (88)
T ss_dssp             EEEEEEEECB-TTBSSCEEEECTT-SSSEEEEEC-CC--CC-TT-CCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCE
T ss_pred             cEEEEEEEcC-CCceeEEEEecCC-CCcEEEEEe-cCChhH-hC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCE
Confidence            4677888885 5789999986533 357889887 999999 86 99999999999999999999999999985  6789


Q ss_pred             eEEEEEEecc
Q psy4897         252 VELEVKYLRE  261 (774)
Q Consensus       252 V~L~V~R~~~  261 (774)
                      +.|+|.|.+.
T Consensus        78 v~l~v~R~g~   87 (88)
T 3bpu_A           78 VTLLVQRQTR   87 (88)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEeCCc
Confidence            9999988653

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=99.00  E-value=1.7e-09  Score=99.58  Aligned_cols=82  Identities=22%  Similarity=0.209  Sum_probs=69.3

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc--Ccc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GKL  251 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~--g~~  251 (774)
                      +.++|+|.|. ..+|||++.++   ..+.+|.+|.+  +|..+| |++||+|++|||++|.+++|+|++++|+..  +..
T Consensus        12 ~~~~V~L~Kg-~~G~GFsI~~~---~~g~~V~~I~~--~~~~aG-L~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~   84 (113)
T 3soe_A           12 LLVTIPLIKG-PKGFGFAIADS---PTGQKVKMILD--SQWCQG-LQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGAD   84 (113)
T ss_dssp             EEEEEEEECB-TTBSSEEEEEE---TTEEEEEEESC--GGGSTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCE
T ss_pred             CEEEEEEEEC-CCcccEEEeCC---CCCcEEEEecC--hHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCE
Confidence            4678899885 67999999764   34567999988  466665 999999999999999999999999999984  779


Q ss_pred             eEEEEEEeccc
Q psy4897         252 VELEVKYLREV  262 (774)
Q Consensus       252 V~L~V~R~~~~  262 (774)
                      |+|+|.|....
T Consensus        85 v~L~V~R~g~~   95 (113)
T 3soe_A           85 VPLLILRGGPP   95 (113)
T ss_dssp             EEEEEEESSCC
T ss_pred             EEEEEEECCcc
Confidence            99999987653

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.00  E-value=2e-09  Score=107.92  Aligned_cols=87  Identities=34%  Similarity=0.515  Sum_probs=78.8

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      ..+.+.+.+....+|||.+.++.+...+++|..|.+++||+++++|++||+|++|||+++.+++|.+++.+++..++.+.
T Consensus         7 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~   86 (200)
T 2qt5_A            7 GSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVV   86 (200)
T ss_dssp             EEEEEEEECCTTCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEE
T ss_pred             CCEEEEEEeCCCCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            46778888877899999999987777889999999999999994499999999999999999999999999998899999


Q ss_pred             EEEEEec
Q psy4897         254 LEVKYLR  260 (774)
Q Consensus       254 L~V~R~~  260 (774)
                      |+|.|.+
T Consensus        87 l~v~R~~   93 (200)
T 2qt5_A           87 LEVEYEL   93 (200)
T ss_dssp             EEEEEEC
T ss_pred             EEEeccC
Confidence            9998864

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=6.3e-10  Score=98.99  Aligned_cols=81  Identities=22%  Similarity=0.410  Sum_probs=71.4

Q ss_pred             ceEEEEEeccCC-CCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcce
Q psy4897         174 QKRIIRVKKSEN-NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLV  252 (774)
Q Consensus       174 ~~r~V~L~k~~~-~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V  252 (774)
                      ..+.+++.+... .++||.+.+    ..+++|..|.+++||+ +| |++||+|++|||++|.++++.+++..++..++.+
T Consensus         8 ~~~~v~l~~~~~~~~~G~~l~~----~~~~~V~~V~~~spA~-ag-L~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~~v   81 (96)
T 2edv_A            8 VRHTVKIDKDTLLQDYGFHISE----SLPLTVVAVTAGGSAH-GK-LFPGDQILQMNNEPAEDLSWERAVDILREAEDSL   81 (96)
T ss_dssp             EEEEEEECCCSSSCSCSBCCCS----SSSCBCCCBCSSSSST-TT-SCTTCBEEEESSCBSTTCCHHHHHHHHHHCSSCE
T ss_pred             ccEEEEEEECCCCCcccEEEec----CCCeEEEEECCCCchh-hC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            467888888654 479999876    4689999999999995 65 9999999999999999999999999999999999


Q ss_pred             EEEEEEec
Q psy4897         253 ELEVKYLR  260 (774)
Q Consensus       253 ~L~V~R~~  260 (774)
                      .|+|.|..
T Consensus        82 ~l~v~R~~   89 (96)
T 2edv_A           82 SITVVRCT   89 (96)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEECC
Confidence            99999865

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=98.99  E-value=2.1e-09  Score=95.80  Aligned_cols=85  Identities=18%  Similarity=0.240  Sum_probs=69.0

Q ss_pred             cceEEEEEeccCC--CCcceEEeCCC-CCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcC
Q psy4897         173 NQKRIIRVKKSEN--NGLGISIKGGK-ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG  249 (774)
Q Consensus       173 ~~~r~V~L~k~~~--~~LGfsi~gg~-~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g  249 (774)
                      ...+.+.+.+...  .++||++.... +...+++|..|.++|||+++| |++||+|++|||++|.+++++++.+++++  
T Consensus         5 ~~~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~l~~~l~~--   81 (94)
T 3kzd_A            5 KVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQ--   81 (94)
T ss_dssp             CEEEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHS--
T ss_pred             cceeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC--
Confidence            3477888888653  47999998743 234589999999999999998 99999999999999999999999999975  


Q ss_pred             cceEEEEEEec
Q psy4897         250 KLVELEVKYLR  260 (774)
Q Consensus       250 ~~V~L~V~R~~  260 (774)
                      ..++|+|+..+
T Consensus        82 ~~l~ltV~~~p   92 (94)
T 3kzd_A           82 PSLGLLVRTYP   92 (94)
T ss_dssp             SEEEEEEEECC
T ss_pred             CeEEEEEEecC
Confidence            47888887644

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.98  E-value=1.3e-09  Score=120.84  Aligned_cols=82  Identities=23%  Similarity=0.384  Sum_probs=71.8

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCce
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKV   97 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~   97 (774)
                      .+..|.+.+.  ++|||+|.||.+  .|++|..|.+||||+++| |++||+|++|||++|.++++.+++.+++.  +|+.
T Consensus         9 ~~~~v~~~k~--~~lG~~i~gg~~--~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~   83 (391)
T 3tsz_A            9 SMKLVKFRKG--DSVGLRLAGGND--VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEE   83 (391)
T ss_dssp             CEEEEEEECC--SSCCEEEEEETT--TEEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSE
T ss_pred             CcEEEEeecC--CceeEEEEecCC--CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCe
Confidence            4455555443  479999998864  689999999999999998 99999999999999999999999999995  7899


Q ss_pred             EEEEeeecc
Q psy4897          98 VELEVGVGY  106 (774)
Q Consensus        98 V~L~V~R~~  106 (774)
                      |+|+|.|+.
T Consensus        84 v~l~v~r~~   92 (391)
T 3tsz_A           84 VTILAQKKK   92 (391)
T ss_dssp             EEEEEEECH
T ss_pred             EEEEEeeCC
Confidence            999999875

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=98.98  E-value=1.9e-09  Score=96.75  Aligned_cols=72  Identities=36%  Similarity=0.524  Sum_probs=63.6

Q ss_pred             CCcceEEeCCCC------------CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcce
Q psy4897         186 NGLGISIKGGKE------------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLV  252 (774)
Q Consensus       186 ~~LGfsi~gg~~------------~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V  252 (774)
                      ..|||++.++.+            ...+++|..|.++|||+++| |++||+|++|||+++.+.++++++..++. .++.+
T Consensus        19 ~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v   97 (104)
T 3sfj_A           19 LILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVV   97 (104)
T ss_dssp             EECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEE
T ss_pred             CcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEE
Confidence            369999996543            24679999999999999998 99999999999999999999999999986 56889


Q ss_pred             EEEEEE
Q psy4897         253 ELEVKY  258 (774)
Q Consensus       253 ~L~V~R  258 (774)
                      .|+|.|
T Consensus        98 ~l~v~R  103 (104)
T 3sfj_A           98 RLLVTR  103 (104)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            999876

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=98.98  E-value=5e-09  Score=116.05  Aligned_cols=158  Identities=13%  Similarity=0.171  Sum_probs=107.0

Q ss_pred             CCCceEEEecC--CCceeEEEeeCChHhHHHHHHHHHHHhhhhhHHHHHH-HhhhcCCCCCCCceEEEEcceeccCCCcc
Q psy4897         320 SENRTLELHSP--DGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAE-ANKILGPALLGDLQLIGWLARKLGQSDCL  396 (774)
Q Consensus       320 ~r~r~FeL~s~--dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~~~~~~-~n~~l~~~~~~~~~~mGWl~~~~~~~~~~  396 (774)
                      .+.++|.|.-.  ...++.++.+++.+++.+|++||..+.....+..... .+..+.+....++..-|||.++...    
T Consensus       206 ~~~~~f~I~~~~~~~~R~y~l~A~s~~e~~~Wi~aIr~a~~~~lq~~~p~~~~~el~~~l~~~~~k~G~L~K~g~~----  281 (386)
T 3lju_X          206 GHPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAARFHYLQVAFPGASDADLVPKLSRNYLKEGYMEKTGPK----  281 (386)
T ss_dssp             TSTTCEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHGGGSSCCCSEEEEEEECCTT----
T ss_pred             CCCceEEEEEecCCCceEEEEEcCCHHHHHHHHHhhhhcccccccccCCccchhhcccccccccceeeeEEEECCC----
Confidence            37789998632  2347899999999999999999988754332211100 0111122234578899999876422    


Q ss_pred             ccCCCCCCCCCCCCCCcceeeecchhhhhhhhccCCCCCCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeccceeEEe
Q psy4897         397 ENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRWVSIFGAVTERELRLY  476 (774)
Q Consensus       397 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~l~~y  476 (774)
                                                                                  ....|+++|++|++..|+.|
T Consensus       282 ------------------------------------------------------------~~k~WKkRwFVL~~~~L~YY  301 (386)
T 3lju_X          282 ------------------------------------------------------------QTEGFRKRWFTMDDRRLMYF  301 (386)
T ss_dssp             ------------------------------------------------------------SCSCCEEEEEEEETTEEEEE
T ss_pred             ------------------------------------------------------------CCCCCcccEEEEECCEEEEE
Confidence                                                                        23689999999999999999


Q ss_pred             cCCCCChhcccCcc----cccceeeEeeeccCCCCC--cEEEEEEeCCCCceeeEEEEecChhHHHHHHHHHHHHHH
Q psy4897         477 ESAPWSPEAWSTPA----HVFPLVSTRLVSSSRHSD--VIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATH  547 (774)
Q Consensus       477 ~~~p~~~~~~~~~~----~~~~l~~~r~~~~s~~~~--~~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l~~~~~  547 (774)
                      .++.....-+..++    ..|.+..  .+..+....  .++|.|.++.    ++++|+++|..|+..|..+|.+++.
T Consensus       302 k~~~d~~~~G~I~L~~~~~~~~v~~--~~~~~~~~~~~~~~F~I~t~~----rty~l~A~s~~e~~~Wi~aL~~~i~  372 (386)
T 3lju_X          302 KDPLDAFARGEVFIGSKESGYTVLH--GFPPSTQGHHWPHGITIVTPD----RKFLFACETESDQREWVAAFQKAVD  372 (386)
T ss_dssp             SSTTCSBCSEEEECCCGGGTCEEEE--SCCTTCCSCCSCEEEEEECSS----CEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             ecCCCcccceEEEeecceeeeeecc--cCCccccccCCCcEEEEEeCC----eEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            99875543333333    2222211  011111122  4999999874    6999999999999999999999874

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=98.97  E-value=1.7e-09  Score=97.33  Aligned_cols=74  Identities=19%  Similarity=0.297  Sum_probs=64.7

Q ss_pred             EEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh---cCceEEEEe
Q psy4897          26 YKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR---AGKVVELEV  102 (774)
Q Consensus        26 l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~---ag~~V~L~V  102 (774)
                      +.+....++||.+...   +.+.+|..|.+||||+++| |++||+|++|||++|...++++++..+++   +++.|.|.|
T Consensus        22 ~l~~~~~g~G~~l~~~---~~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV   97 (101)
T 3qik_A           22 LILPQEEDYGFDIEEK---NKAVVVKSVQRGSLAEVAG-LQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLV   97 (101)
T ss_dssp             EECCCSSSSSEEEEEE---TTEEEEEEECTTSHHHHHT-CCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEeCCCcccEEEEcc---CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEE
Confidence            4456678999999853   4578999999999999998 99999999999999988889999999987   588999988


Q ss_pred             e
Q psy4897         103 G  103 (774)
Q Consensus       103 ~  103 (774)
                      .
T Consensus        98 ~   98 (101)
T 3qik_A           98 A   98 (101)
T ss_dssp             E
T ss_pred             e
Confidence            5

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.97  E-value=9.7e-10  Score=98.35  Aligned_cols=86  Identities=40%  Similarity=0.584  Sum_probs=71.6

Q ss_pred             ceEEEEEecc-CCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcce
Q psy4897         174 QKRIIRVKKS-ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLV  252 (774)
Q Consensus       174 ~~r~V~L~k~-~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V  252 (774)
                      +.+.+.+.+. ...+|||.+.++.+...+++|..|.+++||+++| |++||+|++|||+++.++++.+++..++. ++.+
T Consensus         8 ~~~~v~l~~~~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~v   85 (101)
T 1uez_A            8 EVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKG-SKKL   85 (101)
T ss_dssp             CCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSS-SSSC
T ss_pred             ccEEEEEEECCCCCcccEEEeCCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHhhcC-CCeE
Confidence            4667777664 4678999999876666789999999999999998 99999999999999999998777766654 4688


Q ss_pred             EEEEEEecc
Q psy4897         253 ELEVKYLRE  261 (774)
Q Consensus       253 ~L~V~R~~~  261 (774)
                      .|+|.|..+
T Consensus        86 ~l~v~R~g~   94 (101)
T 1uez_A           86 VLSVYSAGR   94 (101)
T ss_dssp             CEEECCCCC
T ss_pred             EEEEEECCc
Confidence            899987654

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.97  E-value=2e-09  Score=96.30  Aligned_cols=82  Identities=18%  Similarity=0.273  Sum_probs=70.5

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcce
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLV  252 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V  252 (774)
                      .+...+.+.+. ..++||.+.+.    .+++|..|.+++||+++| |++||+|++|||+++.++++.+++++++..++.+
T Consensus        14 ~~~~~v~l~~~-~~g~G~~~~~~----~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v   87 (100)
T 1whd_A           14 GEKLQITIRRG-KDGFGFTICCD----SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEI   87 (100)
T ss_dssp             CEEEEEEEECC-SSSSSCBCCCS----SSCBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTCCHHHHHHHHHHCSSEE
T ss_pred             cceEEEEEECC-CCeeeEEEeCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            34566777764 57899988763    579999999999999998 9999999999999999999999999999877789


Q ss_pred             EEEEEEec
Q psy4897         253 ELEVKYLR  260 (774)
Q Consensus       253 ~L~V~R~~  260 (774)
                      .|+|.|..
T Consensus        88 ~l~v~R~~   95 (100)
T 1whd_A           88 ILLVWRVS   95 (100)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEECC
Confidence            99998754

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=98.96  E-value=1.5e-09  Score=101.29  Aligned_cols=85  Identities=25%  Similarity=0.452  Sum_probs=71.8

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcce
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLV  252 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V  252 (774)
                      .+.+.+.+  ..+|||.+.++.  ..+++|..|.+++||+++| |++||+|++|||++|.++++++++.+|++  .++.+
T Consensus        30 ~~~~~~~~--~~~lG~~l~~~~--~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v  104 (124)
T 3tsv_A           30 MKLVKFRK--GDSVGLRLAGGN--DVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEV  104 (124)
T ss_dssp             CEEEEEEC--SSCCCEEEEECT--TSCEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEE
T ss_pred             eEEEEcCC--CCceeEEEecCC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEE
Confidence            44444444  578999998753  3689999999999999998 99999999999999999999999998885  78899


Q ss_pred             EEEEEEeccccc
Q psy4897         253 ELEVKYLREVTP  264 (774)
Q Consensus       253 ~L~V~R~~~~~~  264 (774)
                      .|+|.|.++...
T Consensus       105 ~l~v~R~~~~~~  116 (124)
T 3tsv_A          105 TILAQKKKDVYR  116 (124)
T ss_dssp             EEEEEECHHHHH
T ss_pred             EEEEEECCchhh
Confidence            999998776543

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.95  E-value=2.3e-10  Score=102.94  Aligned_cols=77  Identities=26%  Similarity=0.418  Sum_probs=69.4

Q ss_pred             CCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecc
Q psy4897         184 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE  261 (774)
Q Consensus       184 ~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~  261 (774)
                      ....|||.+.++.+...+++|..|.+++||+++| |++||+|++|||+++.+++++++.++|+..++.+.|+|.|..+
T Consensus        13 ~~~~lG~~l~~g~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g~   89 (103)
T 1v5l_A           13 GPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET   89 (103)
T ss_dssp             SSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCTT
T ss_pred             CCCCcCEEEeccccCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEECCe
Confidence            4578999998876655689999999999999998 9999999999999999999999999999888999999988654

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=3.9e-10  Score=105.36  Aligned_cols=86  Identities=22%  Similarity=0.365  Sum_probs=72.8

Q ss_pred             ceEEEEEeccCCCCcceEEeCCC----------------------------CCCCCeEEEEecCCChhhhccCCCCCCEE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGK----------------------------ENKMPILISKIFKGMAADQTEQLYVGDAI  225 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~----------------------------~~~~pi~Is~V~pgspA~~aG~L~~GD~I  225 (774)
                      .+|+|.|.+. ..+|||++.+..                            +...+++|..|.+++||+++| |++||+|
T Consensus         8 ~~r~v~l~r~-~~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I   85 (126)
T 2yuy_A            8 GPKTVTLKRT-SQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRI   85 (126)
T ss_dssp             SCCCEEEECC-SSSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHT-CCSSCCC
T ss_pred             CCEEEEEEEC-CCCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcC-CCCCCEE
Confidence            4667888875 468999997510                            012569999999999999998 9999999


Q ss_pred             EEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecc
Q psy4897         226 LSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE  261 (774)
Q Consensus       226 laVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~  261 (774)
                      ++|||++|.++++++++++|+..+..+.|+|.|..+
T Consensus        86 ~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~  121 (126)
T 2yuy_A           86 IKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDS  121 (126)
T ss_dssp             CEETTEECSSCCHHHHHHHHHTCTTEEEEECCCCCC
T ss_pred             EEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence            999999999889999999999989999999987654

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.95  E-value=5.6e-09  Score=95.92  Aligned_cols=86  Identities=34%  Similarity=0.465  Sum_probs=74.0

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      +.+.|.+.+. ..++||.+.++.  ..+++|..|.+++||+++| |++||+|++|||+++.++++.+++..++..++.+.
T Consensus        19 ~~~~v~l~~~-~~~lG~~~~~~~--~~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~   94 (117)
T 1uit_A           19 EPRHVKVQKG-SEPLGISIVSGE--KGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTIT   94 (117)
T ss_dssp             CCEEEEEECS-SCCCCEEEEECT--TSCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEE
T ss_pred             CCEEEEEEeC-CCCccEEEEccC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            4677888875 478999998764  3589999999999999998 99999999999999999998888877777889999


Q ss_pred             EEEEEecccc
Q psy4897         254 LEVKYLREVT  263 (774)
Q Consensus       254 L~V~R~~~~~  263 (774)
                      |+|.|.++..
T Consensus        95 l~v~r~~~~~  104 (117)
T 1uit_A           95 ILAQYNPHVH  104 (117)
T ss_dssp             EEECCCSCCC
T ss_pred             EEEEECCchh
Confidence            9998876544

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=98.94  E-value=6.2e-09  Score=94.73  Aligned_cols=85  Identities=32%  Similarity=0.413  Sum_probs=73.3

Q ss_pred             EEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCC-CCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceE
Q psy4897         176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQL-YVGDAILSVNGEDLREATHDEAVKALKR-AGKLVE  253 (774)
Q Consensus       176 r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L-~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~  253 (774)
                      ..+.+.+....++||.+.+..+ ..+++|..|.+++||+++| | ++||+|++|||+++.+++++++.++++. .++.+.
T Consensus         3 ~~v~l~~~~~~glG~~~~~~~~-~~~~~V~~v~~~spA~~aG-ll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~   80 (112)
T 1qau_A            3 ISVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSG-LIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHV   80 (112)
T ss_dssp             EEEEEECBTTTBTSEEEEECSS-SSCEEEEEECTTSHHHHHT-CCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEE
T ss_pred             EEEEEEcCCCCceeEEEEecCC-CCCEEEEEeCCCChHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEE
Confidence            4577777667889999987532 4689999999999999998 7 9999999999999999999999999987 568999


Q ss_pred             EEEEEeccc
Q psy4897         254 LEVKYLREV  262 (774)
Q Consensus       254 L~V~R~~~~  262 (774)
                      |+|.|.++.
T Consensus        81 l~v~R~g~~   89 (112)
T 1qau_A           81 VLILRGPEG   89 (112)
T ss_dssp             EEEEECCTT
T ss_pred             EEEEeCCcc
Confidence            999987653

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.94  E-value=1.8e-09  Score=100.05  Aligned_cols=86  Identities=17%  Similarity=0.232  Sum_probs=69.4

Q ss_pred             CcEEEEEEee---cCCcccEEEEccC---CCCCCeEEEEecC--CCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHH
Q psy4897          20 DFYSENYKYT---ENNGLGISIKGGK---ENKMPILISKIFK--GMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL   91 (774)
Q Consensus        20 ~~~~V~l~rk---~~~gLGfsI~GG~---e~~~gi~Vs~V~p--GSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lL   91 (774)
                      -.++|++..-   ..+.+||.|....   +...+++|..|.+  ++||+++| |++||+|++|||++|.++++.++..++
T Consensus        12 ~~~~v~l~~~~~~~~g~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~~~~dl~~~l   90 (118)
T 2yub_A           12 LPYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNA-IHPGDRILEINGTPVRTLRVEEVEDAI   90 (118)
T ss_dssp             SCCEEEEEEECSCSSSSCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTSCHHHHHHHH
T ss_pred             CCceeEEeccCCccCCCceEEEEeccccccCCCcEEEEEecCCCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHH
Confidence            3466777663   3355666665221   2346899999999  99999998 999999999999999999999999999


Q ss_pred             HhcCceEEEEeeecc
Q psy4897          92 KRAGKVVELEVGVGY  106 (774)
Q Consensus        92 k~ag~~V~L~V~R~~  106 (774)
                      +..++.+.|+|.|+.
T Consensus        91 ~~~g~~v~l~v~R~g  105 (118)
T 2yub_A           91 KQTSQTLQLLIEHDP  105 (118)
T ss_dssp             HCCSSCEEEEEEECS
T ss_pred             HhCCCEEEEEEEECC
Confidence            987888999998865

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.93  E-value=1.5e-09  Score=101.03  Aligned_cols=88  Identities=20%  Similarity=0.298  Sum_probs=70.4

Q ss_pred             CCCCcEEEEEEeecC-CcccEEEEccCCC--CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          17 SSRDFYSENYKYTEN-NGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        17 ~s~~~~~V~l~rk~~-~gLGfsI~GG~e~--~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      ...++..+.+.+... .+|||++....+.  ..+++|..|.+++||+++|+|++||+|++|||++|.+  +.++..+|+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~--~~~~~~~l~~   93 (124)
T 1wh1_A           16 EELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTS   93 (124)
T ss_dssp             SSCEECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTC
T ss_pred             CcceEEEEEEEecCCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC--HHHHHHHHHh
Confidence            344455556655544 5899999876432  3689999999999999997799999999999999985  6788888887


Q ss_pred             c-CceEEEEeeecc
Q psy4897          94 A-GKVVELEVGVGY  106 (774)
Q Consensus        94 a-g~~V~L~V~R~~  106 (774)
                      . +..|.|+|.|+.
T Consensus        94 ~~g~~v~l~v~R~g  107 (124)
T 1wh1_A           94 EENKNFSLLIARPE  107 (124)
T ss_dssp             SSCCSCCEEEEECS
T ss_pred             CCCCEEEEEEEECC
Confidence            4 788999998875

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.93  E-value=3e-09  Score=99.83  Aligned_cols=82  Identities=22%  Similarity=0.249  Sum_probs=70.9

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKL  251 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~  251 (774)
                      ....+.+.+. ..+|||.+.+.   ..+++|..|.+++||+++|.|++||+|++|||++|.+.++++++++|+.  .+..
T Consensus        27 ~~~~~~l~k~-~~glG~~i~~~---~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~  102 (126)
T 1wif_A           27 KVIQTKLTVG-NLGLGLVVIQN---GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTV  102 (126)
T ss_dssp             CEEEEEEECC-TTCCCCCEEEE---TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCE
T ss_pred             ceEEEEEecC-CceEeEEEEcC---CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCE
Confidence            4556667764 67899988763   4578999999999999998899999999999999998889999999997  5789


Q ss_pred             eEEEEEEe
Q psy4897         252 VELEVKYL  259 (774)
Q Consensus       252 V~L~V~R~  259 (774)
                      |+|+|.|.
T Consensus       103 v~l~V~R~  110 (126)
T 1wif_A          103 LQIKAYRG  110 (126)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEEEC
Confidence            99999876

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.92  E-value=1.8e-09  Score=110.45  Aligned_cols=86  Identities=22%  Similarity=0.234  Sum_probs=73.4

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV   97 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~   97 (774)
                      ....+.|.+.+ ...||||.|.++.+ ..|++|..|.+|+||+++| |++||+|++|||++|.++++.+++.+++..+..
T Consensus         7 ~~~~r~v~l~k-~~~glG~~l~~~~~-~~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~~   83 (216)
T 2krg_A            7 MLRPRLCTMKK-GPSGYGFNLHSDKS-KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDE   83 (216)
T ss_dssp             TCCCEEEEEEC-CSSSSCEEECCCSS-SCSCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCTHHHHHHHHHHCSE
T ss_pred             ccceEEEEEEe-CCCCceEEEEecCC-CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCe
Confidence            34566777754 45689999987653 3489999999999999998 999999999999999999999999999988888


Q ss_pred             E-EEEeeecc
Q psy4897          98 V-ELEVGVGY  106 (774)
Q Consensus        98 V-~L~V~R~~  106 (774)
                      | .|+|.|++
T Consensus        84 v~~l~V~R~g   93 (216)
T 2krg_A           84 TKLLVVDRET   93 (216)
T ss_dssp             EEEEECCHHH
T ss_pred             EEEEEEEECC
Confidence            8 88887765

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.92  E-value=7.6e-09  Score=92.08  Aligned_cols=83  Identities=20%  Similarity=0.300  Sum_probs=69.1

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCc
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGK  250 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~  250 (774)
                      .+.+.+.+.+. ..+|||.+...   ..+++|..|.++  |+++| |++||+|++|||++|.+++|++++++|+.  .++
T Consensus         9 ~~~~~v~l~~~-~~g~G~~i~~~---~~Gv~V~~v~~~--a~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~   81 (96)
T 1ujv_A            9 AELMTLTIVKG-AQGFGFTIADS---PTGQRVKQILDI--QGCPG-LCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGS   81 (96)
T ss_dssp             CCCEEEEEECC-SSSSSEEEEEE---TTEEEEEEESCG--GGSTT-CCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTS
T ss_pred             ceEEEEEEEeC-CCceeEEEEcC---CCCEEEEEEecc--cccCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCC
Confidence            34677888875 58999999753   346899999983  66776 99999999999999999999999999998  378


Q ss_pred             ceEEEEEEeccc
Q psy4897         251 LVELEVKYLREV  262 (774)
Q Consensus       251 ~V~L~V~R~~~~  262 (774)
                      .+.|+|.|....
T Consensus        82 ~v~l~v~R~g~~   93 (96)
T 1ujv_A           82 ETSLIIHRGSGP   93 (96)
T ss_dssp             EEEEEEECCSSC
T ss_pred             EEEEEEEECCCC
Confidence            999999987553

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=3.2e-09  Score=97.88  Aligned_cols=88  Identities=19%  Similarity=0.256  Sum_probs=72.9

Q ss_pred             cceEEEEEeccCCC--CcceEEeCCCCC-CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcC
Q psy4897         173 NQKRIIRVKKSENN--GLGISIKGGKEN-KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG  249 (774)
Q Consensus       173 ~~~r~V~L~k~~~~--~LGfsi~gg~~~-~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g  249 (774)
                      ...+.+.+.+....  ++||++.+..+. ..+++|..|.+++||+++| |++||+|++|||+++.++++.++.++++.  
T Consensus        14 ~~~~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~--   90 (114)
T 2d8i_A           14 KVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQ--   90 (114)
T ss_dssp             CEEEEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGCCHHHHHHHHTS--
T ss_pred             CceEEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhC--
Confidence            35788888887553  799999864322 2579999999999999998 99999999999999999999999999875  


Q ss_pred             cceEEEEEEecccc
Q psy4897         250 KLVELEVKYLREVT  263 (774)
Q Consensus       250 ~~V~L~V~R~~~~~  263 (774)
                      ..+.|+|.|.+...
T Consensus        91 ~~v~l~v~R~p~~~  104 (114)
T 2d8i_A           91 PSLGLLVRTYPELE  104 (114)
T ss_dssp             SEEEEEEEECCCSC
T ss_pred             CcEEEEEEECCCCC
Confidence            38899998866543

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=98.91  E-value=4.3e-09  Score=100.23  Aligned_cols=87  Identities=32%  Similarity=0.451  Sum_probs=72.8

Q ss_pred             ceEEEEEeccC---CCCcceEEeCCCC------------CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCH
Q psy4897         174 QKRIIRVKKSE---NNGLGISIKGGKE------------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH  238 (774)
Q Consensus       174 ~~r~V~L~k~~---~~~LGfsi~gg~~------------~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~  238 (774)
                      ..+.+.+.+..   ...+||.+.++.+            ...+++|..|.+++||+++| |++||+|++|||+++.++++
T Consensus        23 ~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~  101 (139)
T 2vz5_A           23 MVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTH  101 (139)
T ss_dssp             EEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCH
T ss_pred             ceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEcCCCCH
Confidence            45677776643   3479999987543            24689999999999999998 99999999999999999899


Q ss_pred             HHHHHHHHH-cCcceEEEEEEecc
Q psy4897         239 DEAVKALKR-AGKLVELEVKYLRE  261 (774)
Q Consensus       239 ~e~v~~Lk~-~g~~V~L~V~R~~~  261 (774)
                      .+++.+|+. .++.+.|+|.|.+.
T Consensus       102 ~~~~~~l~~~~g~~v~l~v~R~g~  125 (139)
T 2vz5_A          102 DQARKRLTKRSEEVVRLLVTRQSL  125 (139)
T ss_dssp             HHHHHHHCCTTCSEEEEEEEECC-
T ss_pred             HHHHHHHHhCCCCEEEEEEEECCE
Confidence            999999987 67889999998765

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=98.90  E-value=6.4e-09  Score=90.80  Aligned_cols=80  Identities=19%  Similarity=0.297  Sum_probs=65.2

Q ss_pred             EEEEeccC--CCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcce
Q psy4897         177 IIRVKKSE--NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLV  252 (774)
Q Consensus       177 ~V~L~k~~--~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V  252 (774)
                      .+.+.+..  ...+||.+...   ..+++|..|.+++||+++| |++||+|++|||+++.+.++.++..+++.  .++.+
T Consensus         6 ~~~~~~~~~~~~~lG~~~~~~---~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v   81 (90)
T 2eaq_A            6 RISINQTPGKSLDFGFTIKWD---IPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHL   81 (90)
T ss_dssp             EEEEECCTTCSSCCSEEEEEE---TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEE
T ss_pred             EEEEEecCCCCCcccEEEEec---CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEE
Confidence            34444433  34799988642   4579999999999999998 99999999999999976679999999985  57899


Q ss_pred             EEEEEEec
Q psy4897         253 ELEVKYLR  260 (774)
Q Consensus       253 ~L~V~R~~  260 (774)
                      .|+|.|.+
T Consensus        82 ~l~v~R~g   89 (90)
T 2eaq_A           82 VMDVRRYG   89 (90)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEeCC
Confidence            99998864

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.88  E-value=5.5e-09  Score=103.98  Aligned_cols=71  Identities=31%  Similarity=0.404  Sum_probs=65.5

Q ss_pred             CCcceEEeCCCC--------CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEE
Q psy4897         186 NGLGISIKGGKE--------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK  257 (774)
Q Consensus       186 ~~LGfsi~gg~~--------~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~  257 (774)
                      .+|||++.|+.+        ...+++|..|.+++||++ | |++||+|++|||+++.+++|.+++.+++..+..|.|+|.
T Consensus         2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~   79 (195)
T 2qbw_A            2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV   79 (195)
T ss_dssp             CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEE
T ss_pred             CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence            579999999753        356899999999999999 7 999999999999999999999999999998889999999


Q ss_pred             E
Q psy4897         258 Y  258 (774)
Q Consensus       258 R  258 (774)
                      |
T Consensus        80 r   80 (195)
T 2qbw_A           80 R   80 (195)
T ss_dssp             E
T ss_pred             E
Confidence            8

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=98.88  E-value=1.1e-08  Score=87.04  Aligned_cols=76  Identities=20%  Similarity=0.309  Sum_probs=64.5

Q ss_pred             EEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEE
Q psy4897         178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK  257 (774)
Q Consensus       178 V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~  257 (774)
                      ..+.+.....+||.+.      .+++|..|.+++||+++|.|++||+|++|||+++.++++.++.++++..++.+.|+|.
T Consensus         5 ~~~~~~~~~~~g~~~~------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~   78 (81)
T 2rcz_A            5 TLVKSRKNEEYGLRLA------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQ   78 (81)
T ss_dssp             EEECCSTTCCCCEEEE------EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEE
T ss_pred             EEEECCCCCCCCEEEe------CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEEE
Confidence            3455555678998875      3589999999999999977999999999999999988899999999987778888887


Q ss_pred             Ee
Q psy4897         258 YL  259 (774)
Q Consensus       258 R~  259 (774)
                      |.
T Consensus        79 R~   80 (81)
T 2rcz_A           79 RD   80 (81)
T ss_dssp             C-
T ss_pred             eC
Confidence            64

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=98.88  E-value=7.6e-09  Score=96.40  Aligned_cols=86  Identities=23%  Similarity=0.325  Sum_probs=73.4

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc-Ccce
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA-GKLV  252 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~-g~~V  252 (774)
                      .++.+.+.+. ..++||.+.++.+ ..+++|..|.+++||+++| |++||+|++|||+++.++++.++..+|+.. +..+
T Consensus         9 ~~r~v~l~~~-~~g~G~~l~~~~~-~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~   85 (128)
T 2kjd_A            9 RPRLCTMKKG-PSGYGFNLHSDKS-KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETK   85 (128)
T ss_dssp             CCEEEEEECC-SSSCCEEEEECSS-SCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEE
T ss_pred             CcEEEEEecC-CCcccEEEEecCC-CCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEE
Confidence            5788888885 4789999987643 3489999999999999998 999999999999999999999999999884 5667


Q ss_pred             EEEEEEeccc
Q psy4897         253 ELEVKYLREV  262 (774)
Q Consensus       253 ~L~V~R~~~~  262 (774)
                      .|+|.|.+..
T Consensus        86 ~l~v~R~g~~   95 (128)
T 2kjd_A           86 LLVVDRETDE   95 (128)
T ss_dssp             EEEECHHHHH
T ss_pred             EEEEEeCCcc
Confidence            7888876543

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.86  E-value=8.9e-09  Score=102.95  Aligned_cols=89  Identities=25%  Similarity=0.369  Sum_probs=77.8

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCC----CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc-
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKE----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA-  248 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~----~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~-  248 (774)
                      +.+.+.+.+....+|||.+.++.+    ...+++|..|.+++||+++|.|++||+|++|||+++.++++.++..+|+.. 
T Consensus         6 ~~~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   85 (196)
T 1p1d_A            6 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS   85 (196)
T ss_dssp             EEEEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCC
T ss_pred             EEEEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            467788888777999999998743    246799999999999999977999999999999999988899999999985 


Q ss_pred             -CcceEEEEEEeccc
Q psy4897         249 -GKLVELEVKYLREV  262 (774)
Q Consensus       249 -g~~V~L~V~R~~~~  262 (774)
                       +..+.|+|.|.+..
T Consensus        86 ~g~~v~l~v~R~~~~  100 (196)
T 1p1d_A           86 ITSKVTLEIEFDVAE  100 (196)
T ss_dssp             SSSEEEEEEEECSCS
T ss_pred             CCCeEEEEEEecCCC
Confidence             78999999887653

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.84  E-value=3.8e-09  Score=96.78  Aligned_cols=81  Identities=30%  Similarity=0.372  Sum_probs=68.4

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcC-cce
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG-KLV  252 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g-~~V  252 (774)
                      .+|.+.+.+ ...++||.+.+.    .+++|..|.+++||+++| |++||+|++|||++|..+++++++++|+..+ ..+
T Consensus        15 ~~r~v~l~~-~~~~~G~~l~~~----~~v~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v   88 (111)
T 1vae_A           15 PPRGIHFTV-EEGDLGFTLRGN----TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEV   88 (111)
T ss_dssp             CCCCCCEEC-CSSCCSCCEESS----SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEE
T ss_pred             CCeEEEEEc-CCCcccEEEeCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceE
Confidence            356677777 468899988763    578999999999999998 9999999999999999888999999999854 468


Q ss_pred             EEEEEEec
Q psy4897         253 ELEVKYLR  260 (774)
Q Consensus       253 ~L~V~R~~  260 (774)
                      .|+|.+..
T Consensus        89 ~l~V~~~~   96 (111)
T 1vae_A           89 EMKVVSLL   96 (111)
T ss_dssp             CEEEECEE
T ss_pred             EEEEEecC
Confidence            99887643

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=98.84  E-value=1.6e-08  Score=88.43  Aligned_cols=74  Identities=18%  Similarity=0.309  Sum_probs=62.5

Q ss_pred             ccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecc
Q psy4897         182 KSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE  261 (774)
Q Consensus       182 k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~  261 (774)
                      ......+||.+.      .+++|..|.+++||+++|.|++||+|++|||+++.++++.++.++++..++.+.|+|.|.+.
T Consensus        11 ~~~~~~~g~~~~------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~g~   84 (92)
T 3cyy_A           11 SAKNEEYGLRLA------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDER   84 (92)
T ss_dssp             SSTTSCCCEEEE------EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEC---
T ss_pred             CCCCCCCCEEEe------CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEeCCc
Confidence            334568898875      36999999999999999779999999999999999888999999999877789999987654

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.81  E-value=7e-09  Score=96.66  Aligned_cols=87  Identities=31%  Similarity=0.400  Sum_probs=75.1

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCC-CCCCEEEEECCeecCCCCHHHHHHHHHH-cCcc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQL-YVGDAILSVNGEDLREATHDEAVKALKR-AGKL  251 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L-~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~  251 (774)
                      ..+.+.+.+....++||.+.+..+ ..+++|..|.+++||+++| | ++||+|++|||+++.+++++++.++|+. .++.
T Consensus         8 ~~~~v~l~~~~~~glG~~~~~~~~-~~~~~V~~V~~~spA~~aG-ll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~   85 (127)
T 1b8q_A            8 NVISVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSG-LIQAGDIILAVNDRPLVDLSYDSALEVLRGIASET   85 (127)
T ss_dssp             CSEEEEEECTTTSCCSCCEEECTT-SSCEEECCCSSSSSHHHHS-SCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSC
T ss_pred             ceEEEEEEeCCCCcEeEEEEecCC-CCCEEEEEeCCCCHHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCe
Confidence            467788888666899999987532 4689999999999999998 7 9999999999999999999999999987 5689


Q ss_pred             eEEEEEEeccc
Q psy4897         252 VELEVKYLREV  262 (774)
Q Consensus       252 V~L~V~R~~~~  262 (774)
                      +.|+|.|.++.
T Consensus        86 v~l~v~R~g~~   96 (127)
T 1b8q_A           86 HVVLILRGPEG   96 (127)
T ss_dssp             EEEEEECCCCS
T ss_pred             EEEEEEeCCce
Confidence            99999987653

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.81  E-value=2e-08  Score=93.01  Aligned_cols=88  Identities=16%  Similarity=0.248  Sum_probs=70.0

Q ss_pred             ceEEEEEeccCCCCcceEEeCCC---CCCCCeEEEEecC--CChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGK---ENKMPILISKIFK--GMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA  248 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~---~~~~pi~Is~V~p--gspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~  248 (774)
                      ..+.+.+.+...+.+||.+....   +...+++|..|.+  ++||+++| |++||+|++|||++|.+++++++..+|+..
T Consensus        15 ~v~l~~~~~~~~g~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~~~~dl~~~l~~~   93 (118)
T 2yub_A           15 SVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNA-IHPGDRILEINGTPVRTLRVEEVEDAIKQT   93 (118)
T ss_dssp             EEEEEEECSCSSSSCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTSCHHHHHHHHHCC
T ss_pred             eeEEeccCCccCCCceEEEEeccccccCCCcEEEEEecCCCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHhC
Confidence            34555555554556677665321   2246899999999  99999998 999999999999999998889999999877


Q ss_pred             CcceEEEEEEeccc
Q psy4897         249 GKLVELEVKYLREV  262 (774)
Q Consensus       249 g~~V~L~V~R~~~~  262 (774)
                      ++.+.|+|.|.+..
T Consensus        94 g~~v~l~v~R~g~~  107 (118)
T 2yub_A           94 SQTLQLLIEHDPVP  107 (118)
T ss_dssp             SSCEEEEEEECSSC
T ss_pred             CCEEEEEEEECCEE
Confidence            78999999887653

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.77  E-value=1.6e-08  Score=114.18  Aligned_cols=85  Identities=25%  Similarity=0.452  Sum_probs=75.7

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcce
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLV  252 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V  252 (774)
                      +|+|.+.+  ..+|||.+.++.  ..|++|.+|.+||||+++| |++||+|++|||++|.++++++++.+|+.  .+..|
T Consensus         2 ~r~V~l~k--~~~lG~~i~gg~--~~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v   76 (468)
T 3shw_A            2 MKLVKFRK--GDSVGLRLAGGN--DVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEV   76 (468)
T ss_dssp             EEEEEEEC--CSSCCEEEEEET--TTEEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEE
T ss_pred             ceEEEEec--CCccceEEEccC--cCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEE
Confidence            57788887  378999998874  3689999999999999998 99999999999999999999999999998  78999


Q ss_pred             EEEEEEeccccc
Q psy4897         253 ELEVKYLREVTP  264 (774)
Q Consensus       253 ~L~V~R~~~~~~  264 (774)
                      +|+|.|.++...
T Consensus        77 ~L~V~r~g~~~~   88 (468)
T 3shw_A           77 TILAQKKKDVYR   88 (468)
T ss_dssp             EEEEEECHHHHH
T ss_pred             EEEEEECCccch
Confidence            999999776443

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=98.76  E-value=2.4e-08  Score=89.85  Aligned_cols=78  Identities=18%  Similarity=0.288  Sum_probs=65.9

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH---cCcc
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR---AGKL  251 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~---~g~~  251 (774)
                      ...+.+.+ ...++||.+...   ..+++|..|.++|||+++| |++||+|++|||++|...++++++..++.   +++.
T Consensus        18 ~~~l~l~~-~~~g~G~~l~~~---~~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~   92 (101)
T 3qik_A           18 AKRLLILP-QEEDYGFDIEEK---NKAVVVKSVQRGSLAEVAG-LQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRP   92 (101)
T ss_dssp             EEEEEECC-CSSSSSEEEEEE---TTEEEEEEECTTSHHHHHT-CCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCC
T ss_pred             cCeEEEEe-CCCcccEEEEcc---CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCe
Confidence            34455555 467899998753   4568999999999999998 99999999999999987789999999986   6899


Q ss_pred             eEEEEE
Q psy4897         252 VELEVK  257 (774)
Q Consensus       252 V~L~V~  257 (774)
                      +.|+|.
T Consensus        93 v~LLV~   98 (101)
T 3qik_A           93 LRLLVA   98 (101)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999886

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.76  E-value=4.7e-08  Score=87.90  Aligned_cols=82  Identities=15%  Similarity=0.271  Sum_probs=63.0

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCC-CCcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRH-SDVIVFSVRCGTPQGVATHHLRAETHRDLA  536 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~-~~~~~f~~~~~t~~g~~~~~~~~et~~dl~  536 (774)
                      ...|+++||+|++..|++|.++....     |....+|-...++...+. ...++|.|.+.   +-++|+|++||..|+.
T Consensus        21 ~~~Wk~RwfvL~~~~L~yyk~~~~~~-----~~~~i~L~~~~~~~~~~~~~~~~~F~i~~~---~~~~~~~~a~s~~e~~   92 (109)
T 1wgq_A           21 KKPWKHLWFVIKNKVLYTYAASEDVA-----ALESQPLLGFTVTLVKDENSESKVFQLLHK---GMVFYVFKADDAHSTQ   92 (109)
T ss_dssp             TSCCEEEEEEEETTEEEEESCTTCSS-----CSEEEECSSEEEEECCCSSCSSSEEEEEET---TEEEEEEECSSHHHHH
T ss_pred             CCCceeEEEEEeCCEEEEECCCCcCc-----cCceEECCCCEEEECCCCCCCCcEEEEEeC---CCeEEEEECCCHHHHH
Confidence            46899999999999999999887543     455555544444433222 23499999976   3378999999999999


Q ss_pred             HHHHHHHHHHH
Q psy4897         537 NWARTLVQATH  547 (774)
Q Consensus       537 ~w~~~l~~~~~  547 (774)
                      .|..+|..++.
T Consensus        93 ~Wi~al~~a~~  103 (109)
T 1wgq_A           93 RWIDAFQEGTV  103 (109)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHhc
Confidence            99999998874

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.73  E-value=5.4e-08  Score=91.61  Aligned_cols=85  Identities=15%  Similarity=0.216  Sum_probs=62.7

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCc----------------
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQG----------------  521 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g----------------  521 (774)
                      ...|+++||||++..||+|.+....     .|....+|-...++......+.+||.|.++..+.                
T Consensus        20 ~k~WkrRWfVLk~~~L~yyk~~~~~-----~p~G~I~L~~~~v~~~~~~~~~~~F~i~~~~~~~i~~~~g~~~~~~g~~~   94 (130)
T 1v88_A           20 LKSWTKLWCVLKPGVLLIYKTQKNG-----QWVGTVLLNACEIIERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSIT   94 (130)
T ss_dssp             SSSCEEEEEEEETTEEEEESCSSSC-----CCCEEEECSSCEECCCCTTTSSCEEEEECTTCCCCSCSSCTTSCSCSCCC
T ss_pred             CCCceEEEEEEECCEEEEECCCCCC-----CceEEEEcCCCEEEECCCCCCCeEEEEEcCCccccccccCCccccccccc
Confidence            4679999999999999999998754     4455555544444332233445999999875432                


Q ss_pred             ----eeeEEEEecChhHHHHHHHHHHHHHH
Q psy4897         522 ----VATHHLRAETHRDLANWARTLVQATH  547 (774)
Q Consensus       522 ----~~~~~~~~et~~dl~~w~~~l~~~~~  547 (774)
                          -..|+|++||..|+..|.++|..++.
T Consensus        95 ~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~  124 (130)
T 1v88_A           95 QPLPSSYLIIRATSESDGRCWMDALELALK  124 (130)
T ss_dssp             SCCCSSCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred             ccCCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence                12488999999999999999998864

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.73  E-value=4.1e-08  Score=91.30  Aligned_cols=84  Identities=21%  Similarity=0.317  Sum_probs=67.5

Q ss_pred             EEEEeccC-CCCcceEEeCCCC--CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcce
Q psy4897         177 IIRVKKSE-NNGLGISIKGGKE--NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLV  252 (774)
Q Consensus       177 ~V~L~k~~-~~~LGfsi~gg~~--~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V  252 (774)
                      .+.+.+.. ...+||.+.....  ...+++|..|.+++||+++|+|++||+|++|||++|.+  +.++..+|+. .+..+
T Consensus        22 ~~~~~~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v   99 (124)
T 1wh1_A           22 EVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEENKNF   99 (124)
T ss_dssp             CBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCSSCCSC
T ss_pred             EEEEEecCCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCEE
Confidence            34444432 3579999986532  13689999999999999997799999999999999986  8999999987 57899


Q ss_pred             EEEEEEeccc
Q psy4897         253 ELEVKYLREV  262 (774)
Q Consensus       253 ~L~V~R~~~~  262 (774)
                      .|+|.|.+..
T Consensus       100 ~l~v~R~g~~  109 (124)
T 1wh1_A          100 SLLIARPELQ  109 (124)
T ss_dssp             CEEEEECSSC
T ss_pred             EEEEEECCEE
Confidence            9999987653

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=98.73  E-value=5.8e-08  Score=89.47  Aligned_cols=93  Identities=14%  Similarity=0.281  Sum_probs=68.8

Q ss_pred             CCceEEEEEEecc-ceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897         458 TDRWVSIFGAVTE-RELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLA  536 (774)
Q Consensus       458 ~~~w~~~~~~l~~-~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~  536 (774)
                      ...|+++||+|++ ..|+.|.+.+.....+..|+..+.+....++. ......+||.|.+......++++|.++|..|+.
T Consensus        21 ~k~WkkRwfvL~~~~~L~yy~~~~~~~~~g~i~L~~~~~~~~~~~~-~~~~~~~~F~I~~~~~~~~~~~~~~a~s~~e~~   99 (125)
T 1unq_A           21 IKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMK-TERPRPNTFIIRCLQWTTVIERTFHVETPEERE   99 (125)
T ss_dssp             SCCEEEEEEEEETTSEEEEESSCCCSHHHHTSCSEEEECTTCEEEE-ECSSSTTEEEEEEEETTEEEEEEEECSSHHHHH
T ss_pred             ccCccCcEEEEecCCEEEEEeCCCCCCCCceeEccceeEEeeeecc-cccCCCCEEEEEecCCCCceeEEEEeCCHHHHH
Confidence            4679999999995 69999999987766666666655443322221 123445999999743224579999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy4897         537 NWARTLVQATHSCVL  551 (774)
Q Consensus       537 ~w~~~l~~~~~~~~~  551 (774)
                      .|..+|.+++...-.
T Consensus       100 ~Wi~al~~~~~~~~~  114 (125)
T 1unq_A          100 EWTTAIQTVADGLKK  114 (125)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccc
Confidence            999999999876544

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.73  E-value=2.7e-08  Score=110.38  Aligned_cols=88  Identities=24%  Similarity=0.435  Sum_probs=76.3

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKL  251 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~  251 (774)
                      ..+.+.+.+.  .++||.+.++.  ..+++|..|.+||||+++| |++||+|++|||+++.++++++++.+|+.  .|..
T Consensus         9 ~~~~v~~~k~--~~lG~~i~gg~--~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~   83 (391)
T 3tsz_A            9 SMKLVKFRKG--DSVGLRLAGGN--DVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEE   83 (391)
T ss_dssp             CEEEEEEECC--SSCCEEEEEET--TTEEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSE
T ss_pred             CcEEEEeecC--CceeEEEEecC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCe
Confidence            3677777774  47999998864  3789999999999999998 99999999999999999999999999995  7889


Q ss_pred             eEEEEEEeccccccc
Q psy4897         252 VELEVKYLREVTPYF  266 (774)
Q Consensus       252 V~L~V~R~~~~~~~~  266 (774)
                      ++|+|.|.++....+
T Consensus        84 v~l~v~r~~~~~~~~   98 (391)
T 3tsz_A           84 VTILAQKKKDVYRRI   98 (391)
T ss_dssp             EEEEEEECHHHHGGG
T ss_pred             EEEEEeeCCcccccc
Confidence            999999987655433

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=98.71  E-value=6.1e-08  Score=86.15  Aligned_cols=83  Identities=11%  Similarity=0.203  Sum_probs=62.8

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeecc----CCCCCcEEEEEEeCCCCceeeEEEEecChh
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS----SRHSDVIVFSVRCGTPQGVATHHLRAETHR  533 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~----s~~~~~~~f~~~~~t~~g~~~~~~~~et~~  533 (774)
                      ...|+++|++|++..|++|.++..     ..|....+|-...++..    ......++|.|.++..   ++++|+++|..
T Consensus        20 ~~~Wk~R~fvL~~~~L~yy~~~~~-----~~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~i~~~~~---r~~~l~a~s~~   91 (108)
T 1u5d_A           20 GSEWQKRWCVVSRGLFYYYANEKS-----KQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDR---RTYEFTATSPA   91 (108)
T ss_dssp             CEEEEEEEEEEETTEEEEESSTTC-----SSCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSSS---CCEEEECSSHH
T ss_pred             ccCceeeEEEEeCCEEEEecCCCC-----CCCCEEEEecceEEEeCCccccccCCcceEEEEcCCC---cEEEEECCCHH
Confidence            378999999999999999998874     34555555544443222    1122239999998753   68999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy4897         534 DLANWARTLVQATHS  548 (774)
Q Consensus       534 dl~~w~~~l~~~~~~  548 (774)
                      |+..|..+|.+++..
T Consensus        92 e~~~Wi~ai~~~i~~  106 (108)
T 1u5d_A           92 EARDWVDQISFLLKD  106 (108)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998864

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.71  E-value=1.1e-07  Score=87.42  Aligned_cols=83  Identities=18%  Similarity=0.255  Sum_probs=61.6

Q ss_pred             CCceEEEEEEeccc---eeEEecCCCCChhcccCcccccceeeEeeecc-CCCCCcEEEEEEeCCCCceeeEEEEecChh
Q psy4897         458 TDRWVSIFGAVTER---ELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS-SRHSDVIVFSVRCGTPQGVATHHLRAETHR  533 (774)
Q Consensus       458 ~~~w~~~~~~l~~~---~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~-s~~~~~~~f~~~~~t~~g~~~~~~~~et~~  533 (774)
                      ...|+++||||++.   .||+|.+....+.-...|+..|.+..   +.. ......+||.|.++.    ++|+|++|+..
T Consensus        20 ~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~p~g~I~L~g~~V~~---~~~~~~~~~~~~Fki~~~~----~~y~f~A~s~e   92 (112)
T 2coc_A           20 GETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSV---PDPEERLDSGHVWKLQWAK----QSWYLSASSAE   92 (112)
T ss_dssp             SSCEEEEEEECCTTCTTCEEEECCTTCSSSCSEECGGGCEEEC---CCSSSCCSSSEEEEEEETT----EEEEEEESSHH
T ss_pred             CCCceEEEEEEECCCccEEEEECCCCccCcceEEEcCCCEEEe---cCcccccCCCCEEEEecCC----eEEEEEcCCHH
Confidence            35699999999996   59999988866555555555553221   112 223345999999652    68999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy4897         534 DLANWARTLVQATH  547 (774)
Q Consensus       534 dl~~w~~~l~~~~~  547 (774)
                      ++..|.++|..|++
T Consensus        93 ~~~~Wl~al~~A~~  106 (112)
T 2coc_A           93 LQQQWLETLSTAAH  106 (112)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999999874

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=98.69  E-value=3.9e-08  Score=91.44  Aligned_cols=92  Identities=15%  Similarity=0.271  Sum_probs=63.3

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChh----cccCcccccceeeEeeeccCC--CCCcEEEEEEeCCCCceeeEEEEecC
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPE----AWSTPAHVFPLVSTRLVSSSR--HSDVIVFSVRCGTPQGVATHHLRAET  531 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~----~~~~~~~~~~l~~~r~~~~s~--~~~~~~f~~~~~t~~g~~~~~~~~et  531 (774)
                      ...|+++||||++..||+|++++....    -...|....+|...++....+  ....++|.|.+... +-.+++|.++|
T Consensus        25 ~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~~~G~I~L~~~~v~~~~~~~~~k~~~F~I~~~~~-~~~~~~~~A~s  103 (124)
T 2w2x_D           25 DQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQGKNQKSFVFILEPKQQ-GDPPVEFATDK  103 (124)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEGGGEEEEECTTCBTTBSEEEEEEECC---CCCEEEEECC
T ss_pred             CCCceEeEEEEECCEEEEEcccccccccccccCCccccEEECCCCEEEEccCCcCCCCEEEEEECCCC-CCceEEEEECC
Confidence            467999999999999999998653211    112334444454445443322  33459999998743 23579999999


Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q psy4897         532 HRDLANWARTLVQATHSCV  550 (774)
Q Consensus       532 ~~dl~~w~~~l~~~~~~~~  550 (774)
                      ..|+..|.++|..++..+.
T Consensus       104 ~ee~~~Wi~ai~~a~~~~~  122 (124)
T 2w2x_D          104 VEELFEWFQSIREITWKID  122 (124)
T ss_dssp             CHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            9999999999999987654

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=98.69  E-value=1e-07  Score=86.99  Aligned_cols=84  Identities=18%  Similarity=0.258  Sum_probs=60.9

Q ss_pred             CCCceEEEEEEeccceeEEecCCCCChhcccCcccccceee--Eeeec-cCCCCCcEEEEEEeCCCCceeeEEEEecChh
Q psy4897         457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVS--TRLVS-SSRHSDVIVFSVRCGTPQGVATHHLRAETHR  533 (774)
Q Consensus       457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~--~r~~~-~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~  533 (774)
                      ....|+++|++|++..||+|.+.-..     .|....+|..  +..+. ......++||.|++...   .+|+|.+++..
T Consensus        16 ~~k~Wk~rwfvL~~~~L~~yk~~~~~-----~p~~~i~l~~~~~~~~~~~~~~~r~~~F~l~~~~~---~~y~f~A~s~e   87 (112)
T 3cxb_B           16 GKEHWKTCFVVLSNGILYQYPDRTDV-----IPLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDR---PCLELSAESEA   87 (112)
T ss_dssp             SCCCCEEEEEEEETTEEEEESSSSCC-----SCSEEEETTC-CEEEEEECCCSSCTTEEEEEETTS---CCEEEECSSHH
T ss_pred             CCCCceEEEEEEECCEEEEECCCCCC-----CccceEEecCCEEEeeeccCCCCCCeEEEEEcCCC---CEEEEEcCCHH
Confidence            36789999999999999999987543     3444444431  11011 12233459999997643   68999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy4897         534 DLANWARTLVQATHS  548 (774)
Q Consensus       534 dl~~w~~~l~~~~~~  548 (774)
                      ||..|.++|.+++..
T Consensus        88 e~~~Wi~ai~~~~~~  102 (112)
T 3cxb_B           88 EMAEWMQHLCQAVSK  102 (112)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999988754

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.69  E-value=6.9e-08  Score=93.99  Aligned_cols=82  Identities=23%  Similarity=0.366  Sum_probs=70.4

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcce
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLV  252 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V  252 (774)
                      .+|.+.+.+.....+||.+...   ..+++|..|.++|||+++| |++||+|++|||+++.+++++....+++. .+..+
T Consensus         4 ~~r~v~l~k~~~~~lG~~~~~~---~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v   79 (166)
T 1w9e_A            4 DPREVILCKDQDGKIGLRLKSI---DNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKI   79 (166)
T ss_dssp             CCEEEEEECCTTSCCSEEEEEE---TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEE
T ss_pred             CCEEEEEEeCCCCcEeEEEEeC---CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEE
Confidence            4788999987778999999763   4679999999999999998 99999999999999999887677788876 55689


Q ss_pred             EEEEEEe
Q psy4897         253 ELEVKYL  259 (774)
Q Consensus       253 ~L~V~R~  259 (774)
                      .|+|++.
T Consensus        80 ~l~vr~~   86 (166)
T 1w9e_A           80 TMTIRDR   86 (166)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcC
Confidence            9999543

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.68  E-value=2.4e-08  Score=102.12  Aligned_cols=87  Identities=24%  Similarity=0.332  Sum_probs=74.5

Q ss_pred             ccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcc
Q psy4897         172 ENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKL  251 (774)
Q Consensus       172 ~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~  251 (774)
                      ...++.+.+.+. ..+|||.+.++.+ ..+++|..|.+++||+++| |++||+|++|||++|.++++++++.+|+..+..
T Consensus         7 ~~~~r~v~l~k~-~~glG~~l~~~~~-~~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~~   83 (216)
T 2krg_A            7 MLRPRLCTMKKG-PSGYGFNLHSDKS-KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDE   83 (216)
T ss_dssp             TCCCEEEEEECC-SSSSCEEECCCSS-SCSCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCTHHHHHHHHHHCSE
T ss_pred             ccceEEEEEEeC-CCCceEEEEecCC-CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCe
Confidence            345788888885 4689999987643 3489999999999999998 999999999999999988899999999887888


Q ss_pred             e-EEEEEEecc
Q psy4897         252 V-ELEVKYLRE  261 (774)
Q Consensus       252 V-~L~V~R~~~  261 (774)
                      + .|+|.|.+.
T Consensus        84 v~~l~V~R~g~   94 (216)
T 2krg_A           84 TKLLVVDRETD   94 (216)
T ss_dssp             EEEEECCHHHH
T ss_pred             EEEEEEEECCE
Confidence            8 888877654

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=98.67  E-value=3.4e-08  Score=91.16  Aligned_cols=89  Identities=15%  Similarity=0.250  Sum_probs=65.1

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCc---ccccceeeEeeeccCCC-CCcEEEEEEeCCCCceeeEEEEecChh
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTP---AHVFPLVSTRLVSSSRH-SDVIVFSVRCGTPQGVATHHLRAETHR  533 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~---~~~~~l~~~r~~~~s~~-~~~~~f~~~~~t~~g~~~~~~~~et~~  533 (774)
                      ...|+++|++|++..|++|.++......-..+   ...++|....+...... ..++||.|++...   .+|+|.+++..
T Consensus        29 ~~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~~~~~~i~L~~~~v~~~~d~~kr~~~F~l~t~~~---~~~lfqA~s~~  105 (122)
T 1dro_A           29 NRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKKHVLRVKLANG---ALFLLQAHDDT  105 (122)
T ss_dssp             CCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCCEECCSSSSSTTEEEEECSSS---CEEEEECSSSH
T ss_pred             CCCccEEEEEEECCEEEEEeCCcccccCCCcccCCCceEECCCCEEEeCCCCCCCCeEEEEEEcCC---CEEEEECCCHH
Confidence            57899999999999999999987554422222   34566654433222222 3349999997543   78999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy4897         534 DLANWARTLVQATHSC  549 (774)
Q Consensus       534 dl~~w~~~l~~~~~~~  549 (774)
                      ||..|.++|..++..+
T Consensus       106 e~~~Wi~ai~~~i~~~  121 (122)
T 1dro_A          106 EMSQWVTSLKAQSDST  121 (122)
T ss_dssp             HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999987643

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.65  E-value=2.1e-07  Score=84.04  Aligned_cols=84  Identities=18%  Similarity=0.386  Sum_probs=64.5

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeecc--CCCCCcEEEEEEeCCCCceeeEEEEecChhHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS--SRHSDVIVFSVRCGTPQGVATHHLRAETHRDL  535 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~--s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl  535 (774)
                      ...|+++||+|++..|++|.+...     ..|....+|-...++..  ......++|.|.++..   ++++|+++|..|+
T Consensus        18 ~~~Wk~R~fvL~~~~L~yy~~~~~-----~~~~g~i~L~~~~~~~~~~~~~~~~~~F~i~~~~~---r~~~l~a~s~~e~   89 (113)
T 1pls_A           18 FNTWKPMWVVLLEDGIEFYKKKSD-----NSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQ---QDHFFQAAFLEER   89 (113)
T ss_dssp             SSCCEEEEEEEETTEEEEESSTTC-----SSCSEEEESSSCCEESSCCSSCCSSSEEEEEETTT---EEEEEECSSHHHH
T ss_pred             CCCceEEEEEEECCEEEEEeCCCC-----CCcceEEEcCCCEEEEecCCCCCCccEEEEEcCCC---CEEEEECCCHHHH
Confidence            467999999999999999998753     34555555555444431  2223348999998753   7999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy4897         536 ANWARTLVQATHSC  549 (774)
Q Consensus       536 ~~w~~~l~~~~~~~  549 (774)
                      ..|..+|.+++...
T Consensus        90 ~~Wi~ai~~~~~~~  103 (113)
T 1pls_A           90 DAWVRDINKAIKCI  103 (113)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999998654

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=98.65  E-value=1.2e-07  Score=86.76  Aligned_cols=85  Identities=19%  Similarity=0.185  Sum_probs=62.5

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccC---CCCCcEEEEEEeCCCCceeeEEEEecChhH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSS---RHSDVIVFSVRCGTPQGVATHHLRAETHRD  534 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s---~~~~~~~f~~~~~t~~g~~~~~~~~et~~d  534 (774)
                      ...|+++||+|++..|++|.+....     .|....+|-.+.+....   .....++|.|.+...   ++++|.++|..|
T Consensus        25 ~~~WkkR~fvL~~~~L~yy~~~~~~-----~~~g~i~l~~~~v~~~~~~~~~~~~~~f~i~~~~~---r~~~l~a~s~~e   96 (123)
T 1upq_A           25 LRLWKRRWFVLSGHCLFYYKDSREE-----SVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGM---RTYVLAADTLED   96 (123)
T ss_dssp             SCCEEEEEEEEETTEEEEESSTTCC-----SCCEEEEGGGCEEEECCSSCTTSSSSEEEEECTTS---CCEEEECSSHHH
T ss_pred             CCCceeEEEEEeCCEEEEECCCCCc-----ccceEEECCCCEEEECCCCccCCCcEEEEEECCCC---eEEEEECCCHHH
Confidence            4679999999999999999988754     34444444444443322   222349999988643   789999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy4897         535 LANWARTLVQATHSCV  550 (774)
Q Consensus       535 l~~w~~~l~~~~~~~~  550 (774)
                      +..|.++|..+++...
T Consensus        97 ~~~Wi~al~~a~~~~~  112 (123)
T 1upq_A           97 LRGWLRALGRASRAEG  112 (123)
T ss_dssp             HHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999999987543

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.65  E-value=1.7e-07  Score=84.91  Aligned_cols=82  Identities=18%  Similarity=0.285  Sum_probs=60.6

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeec--c-CCCCCcEEEEEEeCCCCceeeEEEEecChhH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVS--S-SRHSDVIVFSVRCGTPQGVATHHLRAETHRD  534 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~--~-s~~~~~~~f~~~~~t~~g~~~~~~~~et~~d  534 (774)
                      ...|+++||+|++..|++|.+....     .|....+|-...+..  . ......++|.|.+...   ++++|+++|..|
T Consensus        25 ~~~Wk~R~fvL~~~~L~yy~~~~~~-----~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~---r~~~l~a~s~~e   96 (117)
T 2d9y_A           25 VKQWNKRWFVLVDRCLFYYKDEKEE-----SILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGV---RTYFFSAESPEE   96 (117)
T ss_dssp             SSCEEEEEEEEETTEEEEESSTTCC-----SCCEEEECSSCEEEECCTTTTCCCSSEEEEECSSS---CEEEEECSSHHH
T ss_pred             CCCceEEEEEECCCEEEEECCCCCC-----CcCCEEEeCCeEEEEcCccccCCCccEEEEEcCCC---cEEEEEcCCHHH
Confidence            4679999999999999999987654     444455554433221  1 1223348999986533   789999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy4897         535 LANWARTLVQATH  547 (774)
Q Consensus       535 l~~w~~~l~~~~~  547 (774)
                      +..|..+|.+++.
T Consensus        97 ~~~Wi~al~~~~~  109 (117)
T 2d9y_A           97 QEAWIQAMGEAAR  109 (117)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988763

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.64  E-value=2e-07  Score=85.17  Aligned_cols=82  Identities=18%  Similarity=0.280  Sum_probs=60.2

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeec--c-CCCCCcEEEEEEeCCCCceeeEEEEecChhH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVS--S-SRHSDVIVFSVRCGTPQGVATHHLRAETHRD  534 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~--~-s~~~~~~~f~~~~~t~~g~~~~~~~~et~~d  534 (774)
                      ...|+++||+|++..|++|.+.....     |....+|-...+..  . ......++|.|.+...   ++++|+++|..|
T Consensus        36 ~~~Wk~R~fvL~~~~L~yy~~~~~~~-----~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~---r~~~l~a~s~~e  107 (122)
T 2yry_A           36 VKQWNKRWFVLVDRCLFYYKDEKEES-----ILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGV---RTYFFSAESPEE  107 (122)
T ss_dssp             SCCEEEEEEEEETTEEEEESSTTCCS-----CCEEEESTTCCCEECCTTCSCSSSSEEEEECSSS---CEEEEECSSHHH
T ss_pred             CCCcEEEEEEEeCCEEEEECCCCCCC-----cccEEEcCCCEEEEcCccccCCcccEEEEecCCC---cEEEEEcCCHHH
Confidence            46799999999999999999887544     44444443322211  1 1223348999986533   789999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy4897         535 LANWARTLVQATH  547 (774)
Q Consensus       535 l~~w~~~l~~~~~  547 (774)
                      +..|..+|.+++.
T Consensus       108 ~~~Wi~al~~a~~  120 (122)
T 2yry_A          108 QEAWIQAMGEAAR  120 (122)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988863

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=98.64  E-value=2.1e-07  Score=85.75  Aligned_cols=82  Identities=13%  Similarity=0.159  Sum_probs=61.2

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeec--cC-CCCCcEEEEEEeCCCCceeeEEEEecChhH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVS--SS-RHSDVIVFSVRCGTPQGVATHHLRAETHRD  534 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~--~s-~~~~~~~f~~~~~t~~g~~~~~~~~et~~d  534 (774)
                      ...|+++||+|++..|++|.+.....     |....+|-.+.+..  .. .....++|.|.+...   ++++|+++|..|
T Consensus        35 ~~~Wk~R~fvL~~~~L~yy~~~~~~~-----~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~---r~~~l~a~s~~e  106 (128)
T 2dkp_A           35 MKLWKKRWFVLSDLCLFYYRDEKEEG-----ILGSILLPSFQIALLTSEDHINRKYAFKAAHPNM---RTYYFCTDTGKE  106 (128)
T ss_dssp             SCCEEEEEEEEETTEEEEESSTTCCS-----EEEEECGGGSEEEECCGGGCCSSCSEEEEECSSS---CCEEEECSSHHH
T ss_pred             CCCceeEEEEEeCCEEEEECCCCCcc-----cceEEEcCceEEEEcCCcccCCCCeEEEEEcCCC---CEEEEEcCCHHH
Confidence            46799999999999999999887543     44444443333322  11 223459999998743   689999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy4897         535 LANWARTLVQATH  547 (774)
Q Consensus       535 l~~w~~~l~~~~~  547 (774)
                      +..|..+|.+|+.
T Consensus       107 ~~~Wi~al~~a~~  119 (128)
T 2dkp_A          107 MELWMKAMLDAAL  119 (128)
T ss_dssp             HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998874

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.63  E-value=2.7e-07  Score=83.44  Aligned_cols=85  Identities=14%  Similarity=0.280  Sum_probs=63.1

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeecc--C-CCCCcEEEEEEeCCCC----ceeeEEEEec
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS--S-RHSDVIVFSVRCGTPQ----GVATHHLRAE  530 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~--s-~~~~~~~f~~~~~t~~----g~~~~~~~~e  530 (774)
                      ...|+++||+|++..|++|.+...     ..|....+|-...++..  . .....++|.|.+....    .-++++|+++
T Consensus        21 ~~~Wk~R~fvL~~~~L~yy~~~~~-----~~~~g~i~L~~~~v~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~l~a~   95 (118)
T 1v89_A           21 VKNWQQRYFVLRAQQLYYYKDEED-----TKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMAS   95 (118)
T ss_dssp             SSCEEEEEEEEETTEEEEESSSSC-----CSCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCCSSCCSSCCCEEEECS
T ss_pred             CCCccEEEEEEECCEEEEEeCCCC-----CCceEEEECCCCEEEEcCcCcccCCcceEEEECCccccccCCCcEEEEECC
Confidence            467999999999999999998864     34555566554443321  1 2233599999984211    2378999999


Q ss_pred             ChhHHHHHHHHHHHHHH
Q psy4897         531 THRDLANWARTLVQATH  547 (774)
Q Consensus       531 t~~dl~~w~~~l~~~~~  547 (774)
                      |..|+..|.++|..++.
T Consensus        96 s~~e~~~Wi~al~~~~~  112 (118)
T 1v89_A           96 SQAEMEEWVKFLRRVAG  112 (118)
T ss_dssp             SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHc
Confidence            99999999999999885

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=98.63  E-value=2e-07  Score=85.48  Aligned_cols=85  Identities=12%  Similarity=0.221  Sum_probs=62.7

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCC-----------------
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQ-----------------  520 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~-----------------  520 (774)
                      ...|+++|++|++..|++|.++...     .|....+|-...++...+....+||.|.++...                 
T Consensus        18 ~~~Wk~R~fvL~~~~L~yy~~~~~~-----~~~g~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~v~   92 (127)
T 1fgy_A           18 VKTWKRRWFILTDNCLYYFEYTTDK-----EPRGIIPLENLSIREVLDPRKPNCFELYNPSHKGQVIKACKTEADGRVVE   92 (127)
T ss_dssp             SCCEEEEEEEEETTEEEEESSTTCS-----SCSEEEECTTCEEEEECCSSCSSEEEEECSSSTTCCCCCEEECTTSCEEE
T ss_pred             CCCeEEEEEEEECCEEEEeCCCCCC-----CcceEEECCceEEEEccCCCCCceEEEecCCccccccccccccCCcceec
Confidence            4679999999999999999987643     444445554444333233344599999987532                 


Q ss_pred             -ceeeEEEEecChhHHHHHHHHHHHHHH
Q psy4897         521 -GVATHHLRAETHRDLANWARTLVQATH  547 (774)
Q Consensus       521 -g~~~~~~~~et~~dl~~w~~~l~~~~~  547 (774)
                       .-++++|+++|..|+..|.++|.+++-
T Consensus        93 ~~~r~~~l~a~s~~e~~~Wi~al~~~i~  120 (127)
T 1fgy_A           93 GNHVVYRISAPSPEEKEEWMKSIKASIS  120 (127)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCHHHHHHHHHHHHHHhc
Confidence             125899999999999999999998874

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.60  E-value=1.5e-07  Score=88.06  Aligned_cols=83  Identities=12%  Similarity=0.160  Sum_probs=59.6

Q ss_pred             CCceEEEEEEeccceeEEec----CCCCChhcccCcccccceeeEeeecc-C-CCCCcEEEEEEeCCCCceeeEEEEecC
Q psy4897         458 TDRWVSIFGAVTERELRLYE----SAPWSPEAWSTPAHVFPLVSTRLVSS-S-RHSDVIVFSVRCGTPQGVATHHLRAET  531 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~----~~p~~~~~~~~~~~~~~l~~~r~~~~-s-~~~~~~~f~~~~~t~~g~~~~~~~~et  531 (774)
                      ...|++||+||++..||.|.    .-.-+..-...++..|.+   ..+.. + ...++++|.+.+.   | ++|+|.+|+
T Consensus        22 ~K~WKrRwFVL~~~~LyYfk~~~~~~~~~~p~G~I~L~g~tV---~~~~~~~~~~~~k~~F~~v~~---~-~ty~~~Ads   94 (126)
T 1wi1_A           22 WKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTV---DYTDPQPGLEGGRAFFNAVKE---G-DTVIFASDD   94 (126)
T ss_dssp             CCSCEEEEEEEEEEETTEEEEEECCSSSSCCSEEEECSSCEE---EECCCCSSCCSCSSEEEEECS---S-CEEEEECSS
T ss_pred             ccccceEEEEEeCCEEEEEEcccccccCCCCceEEECCCcEE---EEecCCcccccCceEEEEecC---C-ceEEEEcCC
Confidence            57899999999999999997    444333334444444422   12211 1 2345599998865   3 479999999


Q ss_pred             hhHHHHHHHHHHHHHH
Q psy4897         532 HRDLANWARTLVQATH  547 (774)
Q Consensus       532 ~~dl~~w~~~l~~~~~  547 (774)
                      ..|+..|.++|..|+.
T Consensus        95 eee~~~WikAi~~A~~  110 (126)
T 1wi1_A           95 EQDRILWVQAMYRATG  110 (126)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999999874

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.60  E-value=1.1e-07  Score=87.49  Aligned_cols=87  Identities=13%  Similarity=0.214  Sum_probs=61.3

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcc-cCcccccceeeEeeeccCC-CCCcEEEEEEeCCCCceeeEEEEecChhHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAW-STPAHVFPLVSTRLVSSSR-HSDVIVFSVRCGTPQGVATHHLRAETHRDL  535 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~-~~~~~~~~l~~~r~~~~s~-~~~~~~f~~~~~t~~g~~~~~~~~et~~dl  535 (774)
                      ...|+++|++|++..|++|.+.......- ..+...++|..+.+..... ....+||.|++...   ++|+|.+++..|+
T Consensus        29 ~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~r~~~F~i~~~~~---~~~~f~A~s~~e~  105 (123)
T 1wjm_A           29 NRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHVFKLGLQDG---KEYLFQAKDEAEM  105 (123)
T ss_dssp             CCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEECTTCSSCSSEEEEECSSS---CEEEEECSSHHHH
T ss_pred             CCCccEEEEEEECCEEEEEEcccccccCcccCCCceEEccCcEEeecccccCCCCEEEEEEcCC---cEEEEECCCHHHH
Confidence            57899999999999999998865322100 1133344454333222222 23349999998753   6899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4897         536 ANWARTLVQATH  547 (774)
Q Consensus       536 ~~w~~~l~~~~~  547 (774)
                      ..|..+|..++.
T Consensus       106 ~~Wi~ai~~~~~  117 (123)
T 1wjm_A          106 SSWLRVVNAAIA  117 (123)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.59  E-value=9.9e-08  Score=90.86  Aligned_cols=88  Identities=15%  Similarity=0.183  Sum_probs=67.0

Q ss_pred             CCceEEEEEEeccc-----eeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecCh
Q psy4897         458 TDRWVSIFGAVTER-----ELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETH  532 (774)
Q Consensus       458 ~~~w~~~~~~l~~~-----~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~  532 (774)
                      ...|+++||+|++.     .|++|.+.+..    ..|....+|-...++........+||.|.+...   ++|+|++++.
T Consensus        37 ~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~----~~~~g~I~L~~~~~~~~~~~~~~~~F~i~~~~~---r~~~l~A~s~  109 (150)
T 1wg7_A           37 MRSFKRRFFHLIQLGDGSYNLNFYKDEKIS----KEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDK---SSYLLAADSE  109 (150)
T ss_dssp             HSSCEEEEEEEEECSSSCEEEEEESSSCCS----SCCSEEECTTTCCEECCCCSSCTTEEEEECSSS---CEEEEECSSH
T ss_pred             ccCeeEEEEEEecCCCCceEEEEECCCCCC----CCcCcEEecccCEEEecCCCCCceEEEEEeCCC---cEEEEEeCCH
Confidence            46899999999997     99999987721    345555555444444332334459999998743   7899999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHh
Q psy4897         533 RDLANWARTLVQATHSCVLN  552 (774)
Q Consensus       533 ~dl~~w~~~l~~~~~~~~~~  552 (774)
                      .|+..|..+|.++++...+.
T Consensus       110 ~e~~~Wi~al~~ai~~~~~~  129 (150)
T 1wg7_A          110 VEMEEWITILNKILQLNFEA  129 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHH
Confidence            99999999999999877654

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=98.59  E-value=8.1e-08  Score=89.36  Aligned_cols=89  Identities=13%  Similarity=0.175  Sum_probs=62.1

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEee--eccCC---CCCcEEEEEEe--CCC-----------
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRL--VSSSR---HSDVIVFSVRC--GTP-----------  519 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~--~~~s~---~~~~~~f~~~~--~t~-----------  519 (774)
                      ...|+++||+|++..|++|.++..  +.-..|....+|-...+  |...+   ....+||.|.+  +.+           
T Consensus        20 ~~~WkrRwfvL~~~~L~yyk~~~d--~~~~~p~g~I~L~~~~~~~v~~~~~~~~~~~~~F~i~~~~p~~~~~~~~~~~~~   97 (134)
T 2y7b_A           20 FGAWHRRWCVLSGNCISYWTYPDD--EKRKNPIGRINLANCTSRQIEPANREFCARRNTFELITVRPQREDDRETLVSQC   97 (134)
T ss_dssp             EEEEEEEEEEEETTEEEEESSHHH--HTTSCCSEEEEGGGBCSSSCEECCTTTCCCTTEEEEEEEEECCTTCCCCSSEEE
T ss_pred             CCCcEEEEEEEECCEEEEECCCCc--ccccCceEEEEhhhCccccccccchhhccCCCEEEEEecCCCcccccccccccc
Confidence            468999999999999999986543  11235555555544332  22222   23459999987  221           


Q ss_pred             ---CceeeEEEEecChhHHHHHHHHHHHHHHH
Q psy4897         520 ---QGVATHHLRAETHRDLANWARTLVQATHS  548 (774)
Q Consensus       520 ---~g~~~~~~~~et~~dl~~w~~~l~~~~~~  548 (774)
                         .+.++|+|+++|..|+..|..+|.+++..
T Consensus        98 ~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~~  129 (134)
T 2y7b_A           98 RDTLCVTKNWLSADTKEERDLWMQKLNQVLVD  129 (134)
T ss_dssp             ETTEEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCceEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence               12358999999999999999999988753

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=98.59  E-value=3.1e-07  Score=82.08  Aligned_cols=81  Identities=17%  Similarity=0.267  Sum_probs=59.7

Q ss_pred             CCceEEEEEEeccc--eeEEecCCCCChhcccCcccccceeeEeeeccCCC------CCcEEEEEEeCCCCceeeEEEEe
Q psy4897         458 TDRWVSIFGAVTER--ELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRH------SDVIVFSVRCGTPQGVATHHLRA  529 (774)
Q Consensus       458 ~~~w~~~~~~l~~~--~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~------~~~~~f~~~~~t~~g~~~~~~~~  529 (774)
                      ...|+++|++|++.  .|++|.+...     ..|....+|-.+.++.....      ...++|.|.++.+   .+++|++
T Consensus        20 ~~~Wk~R~fvL~~~~~~L~yyk~~~~-----~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~---~~~~l~a   91 (109)
T 2i5f_A           20 RKNWKVRKFILREDPAYLHYYDPAGA-----EDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADE---VHYFLQA   91 (109)
T ss_dssp             TCCEEEEEEEEETTTTEEEEECTTSC-----SSCSEEEECTTCEEEEECC--------CCSEEEEECTTC---CEEEEEC
T ss_pred             CCCceEEEEEEeCCCcEEEEECCCCC-----CCccEEEECCCCEEEEccCCcccccCCCceEEEEEeCCC---CEEEEEc
Confidence            45699999999986  9999987753     34555555544333321111      2349999998854   6799999


Q ss_pred             cChhHHHHHHHHHHHHH
Q psy4897         530 ETHRDLANWARTLVQAT  546 (774)
Q Consensus       530 et~~dl~~w~~~l~~~~  546 (774)
                      +|..|+..|..+|.+++
T Consensus        92 ~s~~e~~~Wi~ai~~~~  108 (109)
T 2i5f_A           92 ATPKERTEWIKAIQMAS  108 (109)
T ss_dssp             SSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999998876

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=98.59  E-value=1.4e-07  Score=82.62  Aligned_cols=79  Identities=15%  Similarity=0.202  Sum_probs=60.4

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLAN  537 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~  537 (774)
                      ...|+++|++|++..|+.|.+....   -..|....+|....++.  ...+.++|.+.++.    ++++|+++|..|+..
T Consensus        14 ~k~WkkR~FvL~~~~L~Yy~~~~~~---~~~~~~~i~l~~~~~~~--~~~~~~~F~i~~~~----r~~~l~A~s~~e~~~   84 (94)
T 2rsg_A           14 IHGWQDRWVVLKNNALSYYKSEDET---EYGCRGSICLSKAVITP--HDFDECRFDISVND----SVWYLRAQDPDHRQQ   84 (94)
T ss_dssp             TTCEEEEEEEEETTEEEEESSTTGG---GTCCSEEEETTTCEEEE--CSSCSSEEEEEETT----EEEEEECCSSCCTHH
T ss_pred             CCCceEEEEEEECCEEEEEEecccc---cccceeeEecceeeeec--CcccceeEEEEeCC----eEEEEECCCHHHHHH
Confidence            5679999999999999999886532   23455555555444332  23445899999874    689999999999999


Q ss_pred             HHHHHHHH
Q psy4897         538 WARTLVQA  545 (774)
Q Consensus       538 w~~~l~~~  545 (774)
                      |..+|.+|
T Consensus        85 Wi~aLq~A   92 (94)
T 2rsg_A           85 WIDAIEQH   92 (94)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99999875

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.58  E-value=4.1e-07  Score=84.97  Aligned_cols=86  Identities=22%  Similarity=0.282  Sum_probs=60.4

Q ss_pred             CCceEEEEEEe-ccceeEEecCCCCChhcccCcccccceeeEee------ecc-CCCCCcEEEEEEeCCCCceeeEEEEe
Q psy4897         458 TDRWVSIFGAV-TERELRLYESAPWSPEAWSTPAHVFPLVSTRL------VSS-SRHSDVIVFSVRCGTPQGVATHHLRA  529 (774)
Q Consensus       458 ~~~w~~~~~~l-~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~------~~~-s~~~~~~~f~~~~~t~~g~~~~~~~~  529 (774)
                      ...|+++|++| ++..|+.|.+..........+. ..++...++      +.. ......++|.|.+...   ++|+|.+
T Consensus        21 ~k~WkkRwFVL~~~~~L~Yyk~~~~~~~~g~i~l-~~~~~~i~~~~~~~~v~~~~~~~~~~~F~I~~~~~---r~~~l~A   96 (130)
T 2d9v_A           21 LRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVI-HFNVRDIKVGQECQDVQPPEGRSRDGLLTVNLREG---SRLHLCA   96 (130)
T ss_dssp             SCCEEEEEEEEETTTEEEEESSSSTTSEEEEEEC-TTTEEEEEEGGGCSSCCCCSSCCTTTEEEEEETTS---CEEEEEC
T ss_pred             cCCceeeEEEEccCCEEEEEeCCCCCCcCceEec-ccceeEEeccccccccCCCCCCCcCcEEEEEeCCC---CEEEEEc
Confidence            46899999999 9999999999875433322211 122333232      111 1223349999998643   5899999


Q ss_pred             cChhHHHHHHHHHHHHHH
Q psy4897         530 ETHRDLANWARTLVQATH  547 (774)
Q Consensus       530 et~~dl~~w~~~l~~~~~  547 (774)
                      ||..|+..|..+|..++.
T Consensus        97 ~s~~e~~~Wi~al~~a~~  114 (130)
T 2d9v_A           97 ETRDDAIAWKTALMEANS  114 (130)
T ss_dssp             SSHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHc
Confidence            999999999999998875

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=2.9e-07  Score=83.81  Aligned_cols=84  Identities=15%  Similarity=0.245  Sum_probs=62.3

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLAN  537 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~  537 (774)
                      ...|+++||+|++..|++|.+...      .|.....|+...+. . ...+.+||.|.++.    ++++|+++|..|+..
T Consensus        24 ~k~WkkR~fvL~~~~L~yyk~~~~------~~~~~i~l~~~~v~-~-~~~~~~~F~I~~~~----r~~~l~a~s~~e~~~   91 (114)
T 2da0_A           24 RKVWQRRKCSVKNGILTISHATSN------RQPAKLNLLTCQVK-P-NAEDKKSFDLISHN----RTYHFQAEDEQDYVA   91 (114)
T ss_dssp             CCCEEEEEEEEETTEEEECCSSCC------SCCEEEETTTSEEE-E-CSSSSSCEEEEETT----EEEEEECSSHHHHHH
T ss_pred             CCCceeEEEEEeCCEEEEEcCCCC------CCCCEEEeeeeEEE-E-CCCCCCEEEEEcCC----cEEEEEcCCHHHHHH
Confidence            478999999999999999998543      23333333332222 1 12335899999763    699999999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q psy4897         538 WARTLVQATHSCVLNQ  553 (774)
Q Consensus       538 w~~~l~~~~~~~~~~~  553 (774)
                      |..+|..++..+.+..
T Consensus        92 Wi~al~~~~~~~~~~~  107 (114)
T 2da0_A           92 WISVLTNSKEEALTMA  107 (114)
T ss_dssp             HHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999998876543

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=7.6e-07  Score=80.28  Aligned_cols=87  Identities=15%  Similarity=0.235  Sum_probs=63.6

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceee-EeeeccCC-CCCcEEEEEEeCCCCceeeEEEEecChhHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVS-TRLVSSSR-HSDVIVFSVRCGTPQGVATHHLRAETHRDL  535 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~-~r~~~~s~-~~~~~~f~~~~~t~~g~~~~~~~~et~~dl  535 (774)
                      ...|+++|++|++..|++|.+....     .|....+|-. +.+..... ....++|.|.++.    ++++|+++|..|+
T Consensus        21 ~~~Wk~R~fvL~~~~L~yy~~~~~~-----~~~g~i~L~~~~~v~~~~~~~~~~~~F~i~~~~----r~~~l~a~s~~e~   91 (115)
T 2dn6_A           21 RKNWTERWFVLKPNIISYYVSEDLK-----DKKGDILLDENCCVESLPDKDGKKCLFLVKCFD----KTFEISASDKKKK   91 (115)
T ss_dssp             SSCEEEEEEEECSSCEEEESSTTCS-----SEEEEECCCTTCEEEEECCCTTCCSEEEEECSS----CEEEEECSSHHHH
T ss_pred             CCCcEEeEEEEECCEEEEeCCCCCc-----ccCcEEEecCcEEEEECCCCCCCeeEEEEEeCC----CEEEEEcCCHHHH
Confidence            4679999999999999999987643     3444444443 22221112 2334899998874    5799999999999


Q ss_pred             HHHHHHHHHHHHHHHHhc
Q psy4897         536 ANWARTLVQATHSCVLNQ  553 (774)
Q Consensus       536 ~~w~~~l~~~~~~~~~~~  553 (774)
                      ..|..+|..++....+..
T Consensus        92 ~~Wi~ai~~~~~~~~~~~  109 (115)
T 2dn6_A           92 QEWIQAIHSTIHLLKLGS  109 (115)
T ss_dssp             HHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhcCC
Confidence            999999999987655443

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=98.57  E-value=2.4e-07  Score=85.27  Aligned_cols=82  Identities=17%  Similarity=0.252  Sum_probs=62.9

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCC-CCCcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSR-HSDVIVFSVRCGTPQGVATHHLRAETHRDLA  536 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~-~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~  536 (774)
                      ...|+++||+|++..|++|.++...     .|....+|-....|...+ ....+||.|.++.    ++++|.++|..|+.
T Consensus        31 ~~~Wk~R~fvL~~~~L~yy~~~~~~-----~~~g~i~L~~~~~v~~~~~~~~~~~F~i~~~~----r~~~l~a~s~~e~~  101 (126)
T 1fao_A           31 VKTWKTRWFTLHRNELKYFKDQMSP-----EPIRILDLTECSAVQFDYSQERVNCFCLVFPF----RTFYLCAKTGVEAD  101 (126)
T ss_dssp             SCCEEEEEEEEETTEEEEESSTTCS-----SCSEEEEGGGCCEEEEECSSSSSSEEEEEETT----EEEEEECSSHHHHH
T ss_pred             CCCcccEEEEEECCEEEEeCCCCCC-----CceeEEEccceEEEEecccCCCCCEEEEEeCC----cEEEEECCCHHHHH
Confidence            4679999999999999999987643     455555554444333222 3334999999863    68999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4897         537 NWARTLVQATHS  548 (774)
Q Consensus       537 ~w~~~l~~~~~~  548 (774)
                      .|..+|..++..
T Consensus       102 ~Wi~al~~~i~~  113 (126)
T 1fao_A          102 EWIKILRWKLSQ  113 (126)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            999999988865

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=98.57  E-value=2.4e-07  Score=83.51  Aligned_cols=86  Identities=15%  Similarity=0.197  Sum_probs=58.9

Q ss_pred             CCceEEEEEEe-ccceeEEecCCCCChhcccCccccc--ceeeE-ee--eccCCCCC-cEEEEEEeCCCCceeeEEEEec
Q psy4897         458 TDRWVSIFGAV-TERELRLYESAPWSPEAWSTPAHVF--PLVST-RL--VSSSRHSD-VIVFSVRCGTPQGVATHHLRAE  530 (774)
Q Consensus       458 ~~~w~~~~~~l-~~~~l~~y~~~p~~~~~~~~~~~~~--~l~~~-r~--~~~s~~~~-~~~f~~~~~t~~g~~~~~~~~e  530 (774)
                      ...|+++||+| ++..|++|.++.........+....  .|... .+  +....... .++|.|.+...   ++++|++|
T Consensus        18 ~k~WkkR~fvL~~~~~L~yyk~~~~~~~~g~i~l~~~~i~l~~~~~v~~v~~~~~~~~~~~F~i~~~~~---r~~~l~a~   94 (112)
T 3aj4_A           18 LKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDCMLQIVCRDG---KTISLCAE   94 (112)
T ss_dssp             SCCEEEEEEEECTTSEEEEESSTTCCSEEEEEEHHHHEEEEEEGGGCCSCCCSTTCCGGGEEEEEETTS---CEEEEECS
T ss_pred             CCCeeceEEEEeeCCEEEEEcCCCCCCCCccccccccceeecccccccccCCCCCCCcCcEEEEEecCC---cEEEEEeC
Confidence            46899999999 9999999999886443333333221  11111 11  11112222 48999997633   78999999


Q ss_pred             ChhHHHHHHHHHHHHH
Q psy4897         531 THRDLANWARTLVQAT  546 (774)
Q Consensus       531 t~~dl~~w~~~l~~~~  546 (774)
                      |..|+..|..+|.+|.
T Consensus        95 s~~e~~~Wi~al~~a~  110 (112)
T 3aj4_A           95 STDDCLAWKFTLQDSR  110 (112)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999998875

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.57  E-value=1.1e-07  Score=85.49  Aligned_cols=83  Identities=18%  Similarity=0.394  Sum_probs=59.6

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLAN  537 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~  537 (774)
                      ...|+++||+|++..|++|.+....    ..|...-+|....+.........++|.|.++   +-++++|.++|..|+..
T Consensus        19 ~k~Wk~RwfvL~~~~L~yyk~~~~~----~~~~~~i~l~~~~v~~~~~~~~~~~F~i~~~---~~r~~~l~A~s~~e~~~   91 (107)
T 2cof_A           19 NSQWKSRWCSVRDNHLHFYQDRNRS----KVAQQPLSLVGCEVVPDPSPDHLYSFRILHK---GEELAKLEAKSSEEMGH   91 (107)
T ss_dssp             TTEEEEEEEEECSSCEEEECSSTTC----SEEEEEECTTTCEEECCCBTTBSCEEEEEET---TEEEEEEECSSHHHHHH
T ss_pred             CCCcceEEEEEECCEEEEEeCCccc----CCCeeEEeccceEEEECCCCCCCeEEEEEeC---CCeEEEEEcCCHHHHHH
Confidence            3679999999999999999987641    1222233333223322222334499999986   34889999999999999


Q ss_pred             HHHHHHHHHH
Q psy4897         538 WARTLVQATH  547 (774)
Q Consensus       538 w~~~l~~~~~  547 (774)
                      |..+|.+++.
T Consensus        92 Wi~al~~~~~  101 (107)
T 2cof_A           92 WLGLLLSESG  101 (107)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHHHc
Confidence            9999998763

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=98.56  E-value=2.9e-07  Score=87.62  Aligned_cols=82  Identities=12%  Similarity=0.173  Sum_probs=61.6

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccC----CCCCcEEEEEEeCCCCceeeEEEEecChh
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSS----RHSDVIVFSVRCGTPQGVATHHLRAETHR  533 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s----~~~~~~~f~~~~~t~~g~~~~~~~~et~~  533 (774)
                      ...|+++||+|++..|++|.+....     .|....+|-...++...    .....++|.|.++..   ++++|+++|..
T Consensus        34 ~k~WkkR~fvL~~~~L~yyk~~~~~-----~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~I~~~~~---r~~~l~a~s~~  105 (148)
T 1u5f_A           34 GFEWQKRWCALSKTVFYYYGSDKDK-----QQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDK---RIYQFTAASPK  105 (148)
T ss_dssp             SCSEEEEEEEEETTEEEEESSTTCS-----SCSEEEECTTCEEEECTTSCSSTTGGGEEEEECTTS---CEEEEECSSHH
T ss_pred             CCCceeEEEEEECCEEEEEcCCCCc-----ccceEEEcCCcEEEECCCcccCCCCccEEEEECCCC---cEEEEECCCHH
Confidence            4689999999999999999987653     45555555444433211    112239999998743   78999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy4897         534 DLANWARTLVQATH  547 (774)
Q Consensus       534 dl~~w~~~l~~~~~  547 (774)
                      |+..|.++|.+++.
T Consensus       106 e~~~Wi~al~~~i~  119 (148)
T 1u5f_A          106 DAEEWVQQLKFILQ  119 (148)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988864

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=98.55  E-value=3.1e-07  Score=85.29  Aligned_cols=86  Identities=15%  Similarity=0.208  Sum_probs=67.0

Q ss_pred             CCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCc----eeeEEEEecCh
Q psy4897         457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQG----VATHHLRAETH  532 (774)
Q Consensus       457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g----~~~~~~~~et~  532 (774)
                      ....|+.+|+||++.+|++|.......--+..|+..+.+   |-|.+....++|||.|-++.+..    .+++.|+++|+
T Consensus        26 ~k~~wk~rWFVLt~~~L~yyKd~~eke~~G~IpL~~~~v---r~v~~~~~~rk~~F~l~~~d~r~v~~~h~~y~LsA~t~  102 (125)
T 1dyn_A           26 MKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKL---RDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQ  102 (125)
T ss_dssp             GGTSSEEEEEEEESSEEEEESSTTCSCEEEEEECTTEEE---EECCSCSSSSCEEEEEEETTSSCSSTTCSSEEEEESSH
T ss_pred             ccCCceeeEEEEeccceeeecCCcccccceEEECCCceE---eccCCCCCCCceEEEEECCCCccccccceEEEEeCCCH
Confidence            345699999999999999999999776667777766643   22323223566999999876542    36899999999


Q ss_pred             hHHHHHHHHHHHH
Q psy4897         533 RDLANWARTLVQA  545 (774)
Q Consensus       533 ~dl~~w~~~l~~~  545 (774)
                      .|+-.|.++|.+|
T Consensus       103 ee~~~Wi~s~~ra  115 (125)
T 1dyn_A          103 EEVDSWKASFLRA  115 (125)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999766

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.53  E-value=7e-07  Score=86.07  Aligned_cols=83  Identities=10%  Similarity=0.105  Sum_probs=62.3

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLAN  537 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~  537 (774)
                      ...|+++|++|++..||+|.+..........++..+..+.   +..+.....++|.|.++.    ++|+|.+||..|+..
T Consensus        31 ~k~WkrRWFvLk~~~L~Yyk~~~d~~~~g~I~L~~~~~~~---~~~~~~~~~~~F~I~t~~----r~~~f~A~s~ee~~e  103 (149)
T 1x1f_A           31 YREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLT---EQNSTEKNCAKFTLVLPK----EEVQLKTENTESGEE  103 (149)
T ss_dssp             CCSCEEEEEEEETTEEEEESCSSCSSCSEECCCSSCCEEE---ECCCTTSCCCEEEEECSS----CCEEEECSSHHHHHH
T ss_pred             CCCceeEEEEEcCCEEEEEeCCCccccCcEEECCCceEEe---eccCCCCcCcEEEEEcCC----CEEEEEcCCHHHHHH
Confidence            4789999999999999999998766554555555553221   111122234899999874    589999999999999


Q ss_pred             HHHHHHHHHH
Q psy4897         538 WARTLVQATH  547 (774)
Q Consensus       538 w~~~l~~~~~  547 (774)
                      |.++|..++.
T Consensus       104 Wi~aI~~v~~  113 (149)
T 1x1f_A          104 WRGFILTVTE  113 (149)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999987764

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=98.51  E-value=1.7e-07  Score=83.31  Aligned_cols=86  Identities=14%  Similarity=0.273  Sum_probs=58.4

Q ss_pred             CCCceEEEEEEeccceeEEecCCCCChhc-ccCcccccceeeEeeeccC-CCCCcEEEEEEeCCCCceeeEEEEecChhH
Q psy4897         457 STDRWVSIFGAVTERELRLYESAPWSPEA-WSTPAHVFPLVSTRLVSSS-RHSDVIVFSVRCGTPQGVATHHLRAETHRD  534 (774)
Q Consensus       457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~-~~~~~~~~~l~~~r~~~~s-~~~~~~~f~~~~~t~~g~~~~~~~~et~~d  534 (774)
                      ....|+++|++|++..|++|.+....... =..|....+|....+.... .....++|.|.+...   ++++|.++|..|
T Consensus        19 ~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~F~i~~~~~---~~~~~~A~s~~e   95 (106)
T 1btn_A           19 SSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRLSDG---NEYLFQAKDDEE   95 (106)
T ss_dssp             SCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEECSSCCSSSSEEEEECTTS---CEEEEECSSHHH
T ss_pred             CCCChhEEEEEEECCEEEEEeCCcccccCCCCCCcceEECCCCEEEEcccccCCccEEEEEecCC---CEEEEECCCHHH
Confidence            35789999999999999999876522110 0123333444332222222 223349999997643   789999999999


Q ss_pred             HHHHHHHHHHH
Q psy4897         535 LANWARTLVQA  545 (774)
Q Consensus       535 l~~w~~~l~~~  545 (774)
                      +..|..+|..|
T Consensus        96 ~~~Wi~ai~~A  106 (106)
T 1btn_A           96 MNTWIQAISSA  106 (106)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhcC
Confidence            99999998764

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=98.50  E-value=4.9e-07  Score=83.99  Aligned_cols=87  Identities=16%  Similarity=0.229  Sum_probs=68.3

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCC-C--------CcEEEEEEeCCCCc----eee
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRH-S--------DVIVFSVRCGTPQG----VAT  524 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~-~--------~~~~f~~~~~t~~g----~~~  524 (774)
                      ...|+++|+||++..|+.|.+....++  ..|..+.+|-.+.|...+.. .        ..+.|.+.+... |    -.+
T Consensus        19 ~k~W~~rwfVL~~~~L~yyK~~~~~~d--~~P~gsI~L~~c~v~~~~~~~~~~~~~~~~~~~~F~i~~~~~-~~~~~~~~   95 (120)
T 4a6h_A           19 LKSYSKGYYVLTPNFLHEFKTADRKKD--LVPVMSLALSECTVTEHSRKNSTSSPNSTGSDAKFVLHAKQN-GIIRRGHN   95 (120)
T ss_dssp             TTEEEEEEEEECSSEEEEESSCCTTTC--CSCSEEEEGGGEEEEEECCCCC---------CCEEEEEESSS-SSSCTTCE
T ss_pred             CCCCccEEEEEeCCEEEEEcCCCcCcC--CCceEEEECCCCEEEEcccccccccccccCCCcEEEEEeCCC-CcccCceE
Confidence            468999999999999999988775432  56888888877776553322 1        458999998763 3    359


Q ss_pred             EEEEecChhHHHHHHHHHHHHHH
Q psy4897         525 HHLRAETHRDLANWARTLVQATH  547 (774)
Q Consensus       525 ~~~~~et~~dl~~w~~~l~~~~~  547 (774)
                      ++|+++|..|+..|.++|..++.
T Consensus        96 y~f~A~s~~e~~~Wv~aI~~~~~  118 (120)
T 4a6h_A           96 WVFKADSYESMMSWFDNLKILTS  118 (120)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHCC
T ss_pred             EEEEcCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999998864

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=98.50  E-value=4.4e-07  Score=83.92  Aligned_cols=82  Identities=17%  Similarity=0.266  Sum_probs=60.9

Q ss_pred             CCceEEEEEEeccc--eeEEecCCCCChhcccCcccccceeeEeeeccCCC------CCcEEEEEEeCCCCceeeEEEEe
Q psy4897         458 TDRWVSIFGAVTER--ELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRH------SDVIVFSVRCGTPQGVATHHLRA  529 (774)
Q Consensus       458 ~~~w~~~~~~l~~~--~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~------~~~~~f~~~~~t~~g~~~~~~~~  529 (774)
                      ...|+++||+|++.  .|++|.+...     ..|....+|-.+.++.....      ...++|.|.++..   ++++|++
T Consensus        31 ~~~Wk~R~fvL~~~~~~L~yy~~~~~-----~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~---~~~~l~a  102 (129)
T 1x05_A           31 RKNWKVRKFILREDPAYLHYYDPAGA-----EDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADE---VHYFLQA  102 (129)
T ss_dssp             CCCCEEEEEEEEETTTEEEEECSSCC-----SSCSEEEECTTCEEEECCCCCCSSSCSSCSEEEEECTTC---CCCEEEC
T ss_pred             CCCCeeEEEEEeCCCCEEEEECCCCC-----CcceeEEEccCCEEEEccCCccccccCCCeEEEEEcCCC---CEEEEEC
Confidence            46799999999986  8999987753     34555555554443322111      2349999998744   6799999


Q ss_pred             cChhHHHHHHHHHHHHHH
Q psy4897         530 ETHRDLANWARTLVQATH  547 (774)
Q Consensus       530 et~~dl~~w~~~l~~~~~  547 (774)
                      +|..|+..|..+|.+++.
T Consensus       103 ~s~~e~~~Wi~al~~~~~  120 (129)
T 1x05_A          103 ATPKERTEWIKAIQMASR  120 (129)
T ss_dssp             SSHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            999999999999998874

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.49  E-value=9.3e-07  Score=80.13  Aligned_cols=80  Identities=16%  Similarity=0.200  Sum_probs=61.3

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLAN  537 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~  537 (774)
                      ...|+++||+|++..|++|.+....     .|....+|-....|...   +.++|.|.++.    ++++|++++..|+..
T Consensus        22 ~~~WkkR~fvL~~~~L~yy~~~~~~-----~~~g~i~l~~~~~v~~~---~~~~F~i~~~~----r~~~l~a~s~~e~~~   89 (115)
T 2cod_A           22 KRMFQKRWVKFDGLSISYYNNEKEM-----YSKGIIPLSAISTVRVQ---GDNKFEVVTTQ----RTFVFRVEKEEERND   89 (115)
T ss_dssp             SSCCEEEEEEECSSEEEEEESSCCS-----SCCCEEETTTEEEEEEE---TTTEEEEEESS----CCEEEECSSHHHHHH
T ss_pred             CCCCceEEEEEECCEEEEEcCCCCc-----ccCCEEECCcceEEEeC---CCCEEEEEeCC----cEEEEECCCHHHHHH
Confidence            4679999999999999999987653     45555555443222211   25899999763    689999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4897         538 WARTLVQATHSC  549 (774)
Q Consensus       538 w~~~l~~~~~~~  549 (774)
                      |..+|.+++...
T Consensus        90 Wi~~l~~~~~~~  101 (115)
T 2cod_A           90 WISILLNALKSQ  101 (115)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC
Confidence            999999998654

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=1e-06  Score=80.83  Aligned_cols=84  Identities=18%  Similarity=0.230  Sum_probs=64.4

Q ss_pred             CCceEEEEEEeccc--eeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHH
Q psy4897         458 TDRWVSIFGAVTER--ELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDL  535 (774)
Q Consensus       458 ~~~w~~~~~~l~~~--~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl  535 (774)
                      ...|+++||+|++.  .|+.|.+....     .|....+|-...++.. .....++|.|.++.    ++++|.+++..|+
T Consensus        23 ~k~WkkRwfvL~~~~~~L~Yy~~~~~~-----~~~g~I~L~~~~~~~~-~~~~~~~F~i~~~~----r~~~l~a~s~~e~   92 (119)
T 2dhk_A           23 IRGWKSRWFFYDERKCQLYYSRTAQDA-----NPLDSIDLSSAVFDCK-ADAEEGIFEIKTPS----RVITLKAATKQAM   92 (119)
T ss_dssp             SCCCEEEEEEEETTTTEEEEESSTTCC-----SCSEEEEGGGCEEEEC-TTGGGCEEEEECSS----CCEEEECSSHHHH
T ss_pred             CCCceeEEEEEECCccEEEEECCCCCc-----ccccEEECCCCEEEec-CCCCCCEEEEEeCC----cEEEEECCCHHHH
Confidence            56899999999999  99999988753     4555555554444432 22234899999873    6899999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy4897         536 ANWARTLVQATHSCVL  551 (774)
Q Consensus       536 ~~w~~~l~~~~~~~~~  551 (774)
                      ..|..+|..+++....
T Consensus        93 ~~Wi~al~~~~~~~~~  108 (119)
T 2dhk_A           93 LYWLQQLQMKRWEFHN  108 (119)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999999876544

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=98.48  E-value=2.5e-07  Score=87.33  Aligned_cols=58  Identities=17%  Similarity=0.241  Sum_probs=49.6

Q ss_pred             CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceEEEEeeecc
Q psy4897          45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVVELEVGVGY  106 (774)
Q Consensus        45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V~L~V~R~~  106 (774)
                      ..|++|..|.++|||+ +| |++||+|++|||+++.++.  +...++..  .|+.++|+|.|++
T Consensus        56 ~~g~~V~~V~~~spA~-aG-L~~GD~I~~inG~~v~~~~--~l~~~l~~~~~g~~v~l~v~R~g  115 (134)
T 2l97_A           56 TSGVIVRSVQSNMPAN-GH-LEKYDVITKVDDKEIASST--DLQSALYNHSIGDTIKITYYRNG  115 (134)
T ss_dssp             CSCEEEEECSTTSGGG-TT-SCSSCEEEEETTEECCCHH--HHHHHHHHSSTTCEEEEEEEETT
T ss_pred             CCCEEEEEECCCCchH-HC-CCCCCEEEEECCEEcCCHH--HHHHHHHhCCCCCEEEEEEEECC
Confidence            4689999999999999 87 9999999999999999764  45555554  5889999999875

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.47  E-value=1.3e-07  Score=82.44  Aligned_cols=58  Identities=17%  Similarity=0.126  Sum_probs=48.0

Q ss_pred             CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceEEEEeeecc
Q psy4897          46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVVELEVGVGY  106 (774)
Q Consensus        46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V~L~V~R~~  106 (774)
                      .|+.|..+.|+|||+++| |++||+|++|||++|.++..  ...++..  .++.+.|+|.|++
T Consensus        19 ~G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~~v~~~~d--~~~~~~~~~~g~~v~l~v~R~g   78 (87)
T 2i6v_A           19 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNV--MNTLFQSMNEMTEMSLTVERDG   78 (87)
T ss_dssp             EEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTCHHH--HHHHHHTGGGCSEEEEEEEETT
T ss_pred             EEEEEEeCCCCCHHHHCC-CCCCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEECC
Confidence            468888999999999998 99999999999999998744  4455553  5788999998865

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.47  E-value=1e-07  Score=105.50  Aligned_cols=88  Identities=18%  Similarity=0.280  Sum_probs=73.8

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCC--CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc--C
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKE--NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--G  249 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~--~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~--g  249 (774)
                      ..+.+.+.+....+|||.+.+...  ...+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+|+..  +
T Consensus       204 ~~~~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~  283 (388)
T 3suz_A          204 NCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQ  283 (388)
T ss_dssp             CCEEEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTC
T ss_pred             cceEEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCC
Confidence            467888888777899999987431  123589999999999999988999999999999999999999999999874  4


Q ss_pred             cceEEEEEEecc
Q psy4897         250 KLVELEVKYLRE  261 (774)
Q Consensus       250 ~~V~L~V~R~~~  261 (774)
                      ..+.|+|.|.+.
T Consensus       284 ~~v~l~v~r~~~  295 (388)
T 3suz_A          284 TQVKLNIVSCPP  295 (388)
T ss_dssp             SCEEEEEEECCS
T ss_pred             Cccccccccccc
Confidence            569999988643

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.46  E-value=6.3e-07  Score=81.08  Aligned_cols=80  Identities=14%  Similarity=0.243  Sum_probs=60.4

Q ss_pred             CCceEEEEEEec--cceeEEecCCCCChhcccCcccccceeeEeeeccC--------CCCCcEEEEEEeCCCCceeeEEE
Q psy4897         458 TDRWVSIFGAVT--ERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSS--------RHSDVIVFSVRCGTPQGVATHHL  527 (774)
Q Consensus       458 ~~~w~~~~~~l~--~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s--------~~~~~~~f~~~~~t~~g~~~~~~  527 (774)
                      ...|+++||+|+  +..|++|.+...     ..|....+|-....+...        ...+.++|.|.++.    ++++|
T Consensus        21 ~~~Wk~R~fvL~~~~~~L~yy~~~~~-----~~~~g~i~L~~~~~v~~~~~~~~~~~~~~~~~~F~i~~~~----r~~~l   91 (117)
T 1v5u_A           21 MKPWKARWFVLDKTKHQLRYYDHRMD-----TECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTR----RVYNF   91 (117)
T ss_dssp             SSCCEEEEEEEETTTTEEEEESSSSC-----SSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEESS----CEEEE
T ss_pred             CCCceeeEEEEECCCCEEEEeecCCC-----CccceEEEccCcEEEeecCccccccccCCCCeEEEEECCC----ceEEE
Confidence            467999999999  889999998764     346666666554433211        12233899998764    58999


Q ss_pred             EecChhHHHHHHHHHHHHH
Q psy4897         528 RAETHRDLANWARTLVQAT  546 (774)
Q Consensus       528 ~~et~~dl~~w~~~l~~~~  546 (774)
                      +++|..|+..|..+|.+++
T Consensus        92 ~a~s~~e~~~Wi~al~~~i  110 (117)
T 1v5u_A           92 CAQDVPSAQQWVDRIQSCL  110 (117)
T ss_dssp             ECSSHHHHHHHHHHHHTTC
T ss_pred             ECCCHHHHHHHHHHHHHHh
Confidence            9999999999999998765

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=98.44  E-value=8.5e-07  Score=81.14  Aligned_cols=82  Identities=16%  Similarity=0.322  Sum_probs=61.5

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCC----CCCcEEEEEEeCCCCceeeEEEEecChh
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSR----HSDVIVFSVRCGTPQGVATHHLRAETHR  533 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~----~~~~~~f~~~~~t~~g~~~~~~~~et~~  533 (774)
                      ...|+++|++|++..|++|.+...     ..|....+|-....|....    ....++|.|.++.    ++++|+++|..
T Consensus        27 ~~~Wk~R~fvL~~~~L~yy~~~~~-----~~~~g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~~~----r~~~l~a~s~~   97 (125)
T 1eaz_A           27 MKNWKRRYFQLDENTIGYFKSELE-----KEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTS----RTFYVQADSPE   97 (125)
T ss_dssp             TCCEEEEEEEECSSEEEEESSTTC-----SSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECSS----CEEEEECSSHH
T ss_pred             CCCcceEEEEEeCCEEEEEcCCCC-----CcceeEEEcccceEEeeccccccCCcCCEEEEEeCC----cEEEEEcCCHH
Confidence            467999999999999999998764     3455555554433222111    1234899999763    58999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy4897         534 DLANWARTLVQATHS  548 (774)
Q Consensus       534 dl~~w~~~l~~~~~~  548 (774)
                      |+..|..+|.+++..
T Consensus        98 e~~~W~~al~~~i~~  112 (125)
T 1eaz_A           98 EMHSWIKAVSGAIVA  112 (125)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998864

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.43  E-value=4.9e-07  Score=84.55  Aligned_cols=85  Identities=13%  Similarity=0.256  Sum_probs=59.0

Q ss_pred             CCceEEEEEEec---cceeEEecCCCCChhcccCcccccceee-EeeeccC---CCCCcEEEEEEeCCCCceeeEEEEec
Q psy4897         458 TDRWVSIFGAVT---ERELRLYESAPWSPEAWSTPAHVFPLVS-TRLVSSS---RHSDVIVFSVRCGTPQGVATHHLRAE  530 (774)
Q Consensus       458 ~~~w~~~~~~l~---~~~l~~y~~~p~~~~~~~~~~~~~~l~~-~r~~~~s---~~~~~~~f~~~~~t~~g~~~~~~~~e  530 (774)
                      ...|++||++|+   +..||.|+++- ..+.-..|...-+|-. +.|....   .....+||.|.++.    ++|||.+|
T Consensus        29 ~k~WkrRwFvL~~~~~~~L~Y~k~~~-~~~~~~~~~G~I~L~~~~~V~~~~~~~~~~~~~~F~i~t~~----r~y~l~A~  103 (126)
T 1v5p_A           29 SGKFLRRYFILDTQANCLLWYMDNPQ-NLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINALS----QRYFLQAN  103 (126)
T ss_dssp             SSCEEEEEEEEETTTTEEEEESSCTT-TSCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEEEECSS----CEEEEECS
T ss_pred             CCCccceEEEEecCCCCEEEEECCCC-CCCCCceeeEEEECCCccEEecCCcccCCCCCEEEEEECCC----EEEEEECC
Confidence            578999999999   56667778752 1223345555555544 2332211   12334899887764    68999999


Q ss_pred             ChhHHHHHHHHHHHHHH
Q psy4897         531 THRDLANWARTLVQATH  547 (774)
Q Consensus       531 t~~dl~~w~~~l~~~~~  547 (774)
                      |..|+..|.++|..+++
T Consensus       104 s~~e~~~Wi~al~~a~~  120 (126)
T 1v5p_A          104 DQKDLKDWVEALNQASK  120 (126)
T ss_dssp             SHHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHHHh
Confidence            99999999999998764

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=98.41  E-value=7e-07  Score=81.25  Aligned_cols=58  Identities=21%  Similarity=0.404  Sum_probs=50.7

Q ss_pred             CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      ..|++|..|.++|||+++| |++||+|++|||+++.+  ..+...+++. ++.+.|+|.|++
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~-~~~v~l~v~R~g   91 (113)
T 2pzd_A           34 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQIRRGR   91 (113)
T ss_dssp             SSCEEEEEEBTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHHH-CSSEEEEEEETT
T ss_pred             CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEEEEECC
Confidence            4689999999999999998 99999999999999985  4666777776 688999998865

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A

Probab=98.41  E-value=6e-07  Score=91.30  Aligned_cols=82  Identities=12%  Similarity=0.170  Sum_probs=62.2

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeecc----CCCCCcEEEEEEeCCCCceeeEEEEecChh
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS----SRHSDVIVFSVRCGTPQGVATHHLRAETHR  533 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~----s~~~~~~~f~~~~~t~~g~~~~~~~~et~~  533 (774)
                      ...|+++||+|++..|++|.+....     .|....+|-...++..    ......+||.|.++..   ++|+|+++|..
T Consensus       123 ~k~WkkRwfVL~~~~L~Yyk~~~~~-----~p~g~I~L~~~~~v~~~~~~~~~~k~~~F~I~t~~~---r~~~l~A~s~~  194 (211)
T 1u5e_A          123 GFEWQKRWCALSKTVFYYYGSDKDK-----QQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDK---RIYQFTAASPK  194 (211)
T ss_dssp             TCCCEEEEEEEETTEEEEESSTTCS-----SCSEEEECTTCEEEECGGGCSSTTGGGEEEEECSSS---CEEEEECSSHH
T ss_pred             CCCcEeEEEEEECCEEEEEcCCCCc-----cceEEEEeCCcEEEEcCCccccCCCCCEEEEEcCCC---CEEEEEcCCHH
Confidence            4679999999999999999998754     4455555544343332    1122249999998743   78999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy4897         534 DLANWARTLVQATH  547 (774)
Q Consensus       534 dl~~w~~~l~~~~~  547 (774)
                      |+..|.++|.+++.
T Consensus       195 e~~~Wi~aL~~ai~  208 (211)
T 1u5e_A          195 DAEEWVQQLKFILQ  208 (211)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998874

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.41  E-value=4.5e-07  Score=80.50  Aligned_cols=56  Identities=14%  Similarity=0.143  Sum_probs=46.8

Q ss_pred             eEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc--CceEEEEeeecc
Q psy4897          48 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GKVVELEVGVGY  106 (774)
Q Consensus        48 i~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a--g~~V~L~V~R~~  106 (774)
                      .+|..|.++|||+++| |++||+|++|||++|.++  .++...+...  ++.+.|+|.|++
T Consensus         4 p~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~--~d~~~~l~~~~~~~~v~l~v~R~g   61 (95)
T 3id1_A            4 PVVGEIAANSIAAEAQ-IAPGTELKAVDGIETPDW--DAVRLQLVDKIGDESTTITVAPFG   61 (95)
T ss_dssp             CBEEEECTTSHHHHTT-CCTTCEEEEETTEECSSH--HHHHHHHHHTTTCSEEEEEEECTT
T ss_pred             CEEEeeCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHHhcCCCcEEEEEEECC
Confidence            4688999999999998 999999999999999977  4555555543  368999999876

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=98.39  E-value=1.2e-06  Score=77.73  Aligned_cols=81  Identities=11%  Similarity=0.140  Sum_probs=59.8

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLAN  537 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~  537 (774)
                      ...|+++|++|++..|+.|.+....   -..|....+|-.+.+...  ..+.++|.|.+.   +-++++|+++|..|+..
T Consensus        12 ~k~Wk~R~fvL~~~~L~Yy~~~~~~---~~~~~g~i~L~~~~v~~~--~~~~~~F~i~~~---~~r~~~l~a~s~~e~~~   83 (103)
T 3rcp_A           12 LTGWQPRWFVLDNGILSYYDSQDDV---CKGSKGSIKMAVCEIKVH--SADNTRMELIIP---GEQHFYMKAVNAAERQR   83 (103)
T ss_dssp             TTCEEEEEEEEETTEEEEESSCC------CCCSCEEEGGGCEEECC--TTCSSEEEEEET---TTEEEEEECSSHHHHHH
T ss_pred             CCCeeceEEEEECCEEEEEecCCcc---cCCcccEEEeeeeEEEEc--CCCCceEEEEeC---CCCEEEEECCCHHHHHH
Confidence            4679999999999999999988632   123455555543443321  224689999986   33799999999999999


Q ss_pred             HHHHHHHHH
Q psy4897         538 WARTLVQAT  546 (774)
Q Consensus       538 w~~~l~~~~  546 (774)
                      |..+|.+|.
T Consensus        84 Wi~al~~a~   92 (103)
T 3rcp_A           84 WLVALGSSK   92 (103)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHHHHHHH
Confidence            999998775

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.38  E-value=3.5e-07  Score=81.75  Aligned_cols=58  Identities=17%  Similarity=0.328  Sum_probs=49.2

Q ss_pred             CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceEEEEeeecc
Q psy4897          45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVVELEVGVGY  106 (774)
Q Consensus        45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V~L~V~R~~  106 (774)
                      ..|++|..|.++|||++ | |++||+|++|||++|.++  .+...++..  .++.+.|+|.|++
T Consensus         6 ~~Gv~V~~V~~~spA~~-G-L~~GD~I~~Ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g   65 (100)
T 3i18_A            6 YDGVYVMSVKDDVPAAD-V-LHAGDLITEIDGNAFKSS--QEFIDYIHSKKVGDTVKINYKHGD   65 (100)
T ss_dssp             CCCEEEEEECTTSGGGG-T-CCTTCEEEEETTBCCSSH--HHHHHHHHTSCTTCEEEEEEEETT
T ss_pred             CCCEEEEEeCCCCchHH-C-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECC
Confidence            46899999999999995 6 999999999999999976  455666664  5789999998865

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.36  E-value=8.6e-07  Score=79.92  Aligned_cols=59  Identities=17%  Similarity=0.076  Sum_probs=47.7

Q ss_pred             CeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          47 PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        47 gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      |+.|..+.|+|||+++| |++||+|++|||++|.++............++.+.|+|.|++
T Consensus        38 G~~V~~~~pas~A~~aG-l~~GDvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R~g   96 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDG   96 (105)
T ss_dssp             EEEEEECSCTHHHHHHT-CCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEEEEETT
T ss_pred             EEEEecCCCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCeEEEEEEECC
Confidence            57788888889999998 999999999999999998765432222246789999998875

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.35  E-value=2.2e-07  Score=82.24  Aligned_cols=59  Identities=19%  Similarity=0.347  Sum_probs=50.5

Q ss_pred             CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceEEEEeeecc
Q psy4897          44 NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVVELEVGVGY  106 (774)
Q Consensus        44 ~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V~L~V~R~~  106 (774)
                      ...|++|..|.++|||++ | |++||+|++|||+++.++  .+...+++.  .++.+.|+|.|++
T Consensus         3 ~~~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g   63 (94)
T 2kl1_A            3 EAKGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQPINTS--EQIVSYVREKQAGDRVRVTFIRDR   63 (94)
T ss_dssp             CCCCEECCCCCTTSTTBT-T-BCTTCEEEEETTBCCCCH--HHHHHHHHHSCTTCCEEEEEEETT
T ss_pred             CCCcEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECC
Confidence            346899999999999998 7 999999999999999875  556666765  5889999999875

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=98.35  E-value=1.2e-06  Score=82.13  Aligned_cols=88  Identities=14%  Similarity=0.217  Sum_probs=67.6

Q ss_pred             CCceEEEEEEeccceeEEecCCCCC---hhc-ccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChh
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWS---PEA-WSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHR  533 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~---~~~-~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~  533 (774)
                      -..|+++|++|+|..||+|+.....   ..+ -..|....+|....|.........+||.|.+... | ..|.|++++..
T Consensus        21 ~ksWkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P~~~i~L~g~~V~~~e~~~~~~~F~L~~~~~-G-~~Y~fqA~s~~   98 (126)
T 2dtc_A           21 LSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLPDDPEHPDIFQLNNPDK-G-NVYKFQTGSRF   98 (126)
T ss_dssp             SCCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEECTTCEEECCCCTTSTTEEEEECTTS-C-SEEEEECSSHH
T ss_pred             ccCcccEEEEEeCCEEEEEcccccccccccccccCCCceEEeCCCEEEecCCCCCCCEEEEeeCCC-C-CEEEEeCCCHH
Confidence            4689999999999999999965322   122 3478888888777765333334459999996532 4 66999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy4897         534 DLANWARTLVQATH  547 (774)
Q Consensus       534 dl~~w~~~l~~~~~  547 (774)
                      ++..|.++|..|+.
T Consensus        99 ~~~~W~~ai~~a~~  112 (126)
T 2dtc_A           99 HAILWHKHLDDACK  112 (126)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998875

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=98.35  E-value=1e-06  Score=81.78  Aligned_cols=86  Identities=15%  Similarity=0.286  Sum_probs=60.6

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcc-------cCcccccceeeEeeeccC--CCCCcEEEEEEeCCCCceeeEEEE
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAW-------STPAHVFPLVSTRLVSSS--RHSDVIVFSVRCGTPQGVATHHLR  528 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~-------~~~~~~~~l~~~r~~~~s--~~~~~~~f~~~~~t~~g~~~~~~~  528 (774)
                      ...|+++|++|++..|++|.+........       ..|....+|-.+.+...+  ....+++|.|++..+   ..|+|.
T Consensus        28 ~r~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a~v~~~~~d~~krk~vF~l~t~~~---~~ylfq  104 (124)
T 3pp2_A           28 KKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKDKSSRKNVLELRSRDG---SEYLIQ  104 (124)
T ss_dssp             SCCCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEECTTCEEEECCGGGCSSSSEEEEECTTS---CEEEEE
T ss_pred             CCCceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEcCCCEEEecccccCCCceEEEEECCCC---CEEEEE
Confidence            46899999999999999999876443222       134444444333322221  223359999998643   679999


Q ss_pred             ecChhHHHHHHHHHHHHH
Q psy4897         529 AETHRDLANWARTLVQAT  546 (774)
Q Consensus       529 ~et~~dl~~w~~~l~~~~  546 (774)
                      +++..||..|.++|..|+
T Consensus       105 A~s~~e~~~Wi~aI~~aI  122 (124)
T 3pp2_A          105 HDSEAIISTWHKAIAQGI  122 (124)
T ss_dssp             CSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999999886

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.33  E-value=8.9e-07  Score=81.70  Aligned_cols=82  Identities=15%  Similarity=0.208  Sum_probs=59.4

Q ss_pred             CCceEEEEEEec--cceeEEecCCCCChhcccCcccccceeeEeeeccCC----C--C---CcEEEEEEeCCCCceeeEE
Q psy4897         458 TDRWVSIFGAVT--ERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSR----H--S---DVIVFSVRCGTPQGVATHH  526 (774)
Q Consensus       458 ~~~w~~~~~~l~--~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~----~--~---~~~~f~~~~~t~~g~~~~~  526 (774)
                      ...|+++||+|+  +..|+.|+++.    .-..|....+|-.+.+.....    .  .   ..++|.|.++..   ++++
T Consensus        31 ~~~Wk~R~fvL~~d~~~L~yy~~~~----~~~~~~g~i~L~~~~v~~~~~~~~p~~~~~~~~~~~F~I~~~~~---r~~~  103 (129)
T 1x1g_A           31 RKNWKVRRFVLRKDPAFLHYYDPSK----EENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDD---THYY  103 (129)
T ss_dssp             SSSEEEEEEEEEESSCEEEEECSSS----CCSSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSCEEECCTTC---CCEE
T ss_pred             CCCeeeEEEEEeCCCCeEEEeCCCC----cCCccceEEECcCCEEEEeCCCCCcccccCCCCCceEEEEcCCC---CEEE
Confidence            577999999999  46899998862    123555555554433322111    1  1   348999998854   6899


Q ss_pred             EEecChhHHHHHHHHHHHHH
Q psy4897         527 LRAETHRDLANWARTLVQAT  546 (774)
Q Consensus       527 ~~~et~~dl~~w~~~l~~~~  546 (774)
                      |+++|..|+..|..+|.+++
T Consensus       104 l~a~s~~e~~~Wi~al~~~~  123 (129)
T 1x1g_A          104 IQASSKAERAEWIEAIKKLT  123 (129)
T ss_dssp             ECCSSHHHHHHHHHHHHHHS
T ss_pred             EEcCCHHHHHHHHHHHHHHH
Confidence            99999999999999999886

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=98.33  E-value=2.3e-06  Score=79.43  Aligned_cols=90  Identities=13%  Similarity=0.192  Sum_probs=58.1

Q ss_pred             CCceEEEEEEecc-ceeEEecCCCC------Ch-hc-----ccCcccccceeeEeeecc----CCC--CCcEEEEEEeCC
Q psy4897         458 TDRWVSIFGAVTE-RELRLYESAPW------SP-EA-----WSTPAHVFPLVSTRLVSS----SRH--SDVIVFSVRCGT  518 (774)
Q Consensus       458 ~~~w~~~~~~l~~-~~l~~y~~~p~------~~-~~-----~~~~~~~~~l~~~r~~~~----s~~--~~~~~f~~~~~t  518 (774)
                      ...|+++|++|++ .-||.|++...      .+ -+     =..|....+|....+...    ++.  .+.+||.|.+++
T Consensus        19 ~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~~~~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~F~I~t~~   98 (128)
T 2rlo_A           19 NKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASGSAGQAEEENFEFLIVSST   98 (128)
T ss_dssp             TCCEEEEEEEEETTTEEEEESSHHHHHHTCSCEEEESSSCEEECSSCCCCCSSCCCSCCSCCCCSSCCCCCCCEEEECTT
T ss_pred             cCCccEEEEEEeCCCEEEEecchhhhccccCCCeeeeeeeEEecCCCccccccccccccccccccccccCCceEEEEcCC
Confidence            5789999999996 66777765211      00 00     011222233322222110    111  345999999885


Q ss_pred             CCceeeEEEEecChhHHHHHHHHHHHHHHHHH
Q psy4897         519 PQGVATHHLRAETHRDLANWARTLVQATHSCV  550 (774)
Q Consensus       519 ~~g~~~~~~~~et~~dl~~w~~~l~~~~~~~~  550 (774)
                      .   ++|+|.++|..|+..|..+|.+++..+.
T Consensus        99 ~---r~~~l~A~s~~e~~~Wi~ai~~~i~~~l  127 (128)
T 2rlo_A           99 G---QTWHFEAASFEERDAWVQAIESQILASL  127 (128)
T ss_dssp             S---CEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             C---CEEEEEcCCHHHHHHHHHHHHHHHHHHc
Confidence            3   7899999999999999999999998764

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=98.33  E-value=3.5e-06  Score=88.62  Aligned_cols=91  Identities=11%  Similarity=0.051  Sum_probs=63.4

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeecc----CCCCCcEEEEEEeCCCC--ceeeEEEEecC
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS----SRHSDVIVFSVRCGTPQ--GVATHHLRAET  531 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~----s~~~~~~~f~~~~~t~~--g~~~~~~~~et  531 (774)
                      ..+|+++||+|++..||+|.+..........++..+..+..-.+..    ......+||.|.++...  .-.+|||++||
T Consensus       181 ~k~WkkR~fvL~~~~L~yyk~~~~~~~~~~i~l~~l~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~~~~l~A~s  260 (291)
T 3tca_A          181 KKSWKRRYFLLRASGIYYVPKGKTKTSRDLACFIQFENVNIYYGIQCKMKYKAPTDHCFVLKHPQIQKESQYIKYLCCDD  260 (291)
T ss_dssp             SSCEEEEEEEECSSEEEECCTTCCSSTTTCEEEEEGGGCEEEEECSHHHHHCCSSSCEEEEECTTCCSCCTTSEEEECSS
T ss_pred             CCCceEEEEEEeCCEEEEEecCccccccCceeeccceeEEEEecCccccccCCCCCeEEEEEcCCCCCCCceEEEEECCC
Confidence            4679999999999999999887765544444444333222211111    11223499999986432  22579999999


Q ss_pred             hhHHHHHHHHHHHHHHH
Q psy4897         532 HRDLANWARTLVQATHS  548 (774)
Q Consensus       532 ~~dl~~w~~~l~~~~~~  548 (774)
                      ..|+..|..+|-.|-|.
T Consensus       261 ~~e~~~Wi~air~Ak~g  277 (291)
T 3tca_A          261 ARTLSQWVMGIRIAKYG  277 (291)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999888764

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=98.33  E-value=1.5e-06  Score=89.18  Aligned_cols=137  Identities=17%  Similarity=0.240  Sum_probs=93.7

Q ss_pred             CCceEEEEcceeccCCCccccCCCCCCCCCCCCCCcceeeecchhhhhhhhccCCC-CCCCCCCCCCCCCCCccCCCCCC
Q psy4897         378 GDLQLIGWLARKLGQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAP-WSPEAWSTPAHNGRASSESSGDD  456 (774)
Q Consensus       378 ~~~~~mGWl~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~  456 (774)
                      +.+-+=|||.++..                  .-..|+.+++||+|--+..|.+.+ --.+.|-.-..  +..  ..  .
T Consensus        19 ~~~~~~g~l~~~~~------------------~~~~w~~rw~vl~~~~~~~~~~~~~~~k~G~L~K~g--~~~--~~--~   74 (228)
T 3tfm_A           19 GSPYFHSFLYMNGG------------------LMNSWKRRWCVLKDETFLWFRSKQEALKQGWLHNNG--GGS--ST--L   74 (228)
T ss_dssp             --CCEEEEEEECCT------------------TTCCCEEEEEEEETTEEEEESSCCCSSEEEEEEECG--GGC--SS--S
T ss_pred             CCCceEEEEeecCc------------------ccccceEEEEEEeCCEEEEeccCCCcceEEEEEEEC--CCc--CC--c
Confidence            46678899998821                  235699999999999888887532 22333322111  000  00  1


Q ss_pred             CCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897         457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLA  536 (774)
Q Consensus       457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~  536 (774)
                      ....|+++||+|++..|++|.+....     .|....+|-...++.... ...++|.|.++.    ++++|.++|..|+.
T Consensus        75 ~~k~WkkRwfvL~~~~L~Yyk~~~~~-----~~~g~I~L~~~~~v~~~~-~k~~~F~I~t~~----r~~~l~A~s~~e~~  144 (228)
T 3tfm_A           75 SRRNWKKRWFVLRQSKLMYFENDSEE-----KLKGTVEVRSAKEIIDNT-NKENGIDIIMAD----RTFHLIAESPEDAS  144 (228)
T ss_dssp             CGGGCEEEEEEECSSEEEEESSTTCC-----SEEEEEEGGGCSEEEEET-TTTSEEEEECSS----CEEEEECSSHHHHH
T ss_pred             ccCCceEEEEEEeCCEEEEEeCCCCc-----ceeEEEEcCCCEEeccCC-CCCcEEEEEcCC----cEEEEEcCCHHHHH
Confidence            24789999999999999999998754     344444444333332211 335999998863    68999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4897         537 NWARTLVQATHS  548 (774)
Q Consensus       537 ~w~~~l~~~~~~  548 (774)
                      .|.++|.+++..
T Consensus       145 ~Wv~aL~~~i~~  156 (228)
T 3tfm_A          145 QWFSVLSQVHSS  156 (228)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhc
Confidence            999999999864

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.32  E-value=1.5e-06  Score=79.73  Aligned_cols=88  Identities=16%  Similarity=0.237  Sum_probs=65.1

Q ss_pred             CCceEEEEEEec--cceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHH
Q psy4897         458 TDRWVSIFGAVT--ERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDL  535 (774)
Q Consensus       458 ~~~w~~~~~~l~--~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl  535 (774)
                      ...|+++||+|+  +..|+.|.+....   -..|....+|-.+.+..  ...+.++|.|.++..   ++++|++++..|+
T Consensus        21 ~~~Wk~R~fvL~~~~~~L~Yyk~~~~~---~~~~~g~I~L~~~~v~~--~~~~~~~F~i~~~~~---r~~~l~a~s~~e~   92 (120)
T 2d9x_A           21 VTGWQYRFFVLNNEAGLLEYFVNEQSR---NQKPRGTLQLAGAVISP--SDEDSHTFTVNAASG---EQYKLRATDAKER   92 (120)
T ss_dssp             TTEEEEEEEEECTTTCEEEEESSGGGS---SSCCSEEEECTTCCEEC--CSSSSSCEEECCSSS---CCEEECCSSHHHH
T ss_pred             CCCceEEEEEEECCCCEEEEEecCccc---CCCccceEEcceEEEEe--cCCCCCEEEEEcCCC---CEEEEECCCHHHH
Confidence            467999999999  5799999887632   12355555554444332  223459999998743   7899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhc
Q psy4897         536 ANWARTLVQATHSCVLNQ  553 (774)
Q Consensus       536 ~~w~~~l~~~~~~~~~~~  553 (774)
                      ..|..+|.+++.......
T Consensus        93 ~~Wi~al~~~~~~~~~~~  110 (120)
T 2d9x_A           93 QHWVSRLQICTQHHTEAI  110 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhhhhh
Confidence            999999999987766544

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=98.32  E-value=1.8e-06  Score=80.76  Aligned_cols=88  Identities=20%  Similarity=0.306  Sum_probs=62.3

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChh------cccCcccccceeeEeeeccCC-CCCcEEEEEEeCCCCceeeEEEEec
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPE------AWSTPAHVFPLVSTRLVSSSR-HSDVIVFSVRCGTPQGVATHHLRAE  530 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~------~~~~~~~~~~l~~~r~~~~s~-~~~~~~f~~~~~t~~g~~~~~~~~e  530 (774)
                      ...|+++|++|++..|++|.+.-....      .-..|....+|-...+....+ ...+++|.|.+...   ..|+|.++
T Consensus        31 ~k~Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~~kr~~~F~l~t~~~---~~yl~qA~  107 (129)
T 2p0d_A           31 RKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLSSRRNVLHIRTIPG---HEFLLQSD  107 (129)
T ss_dssp             CCCCEEEEEEEESSEEEEESCC--------------CCSEEEECTTCEEEECTTSCSSSSEEEEECTTS---CEEEEECS
T ss_pred             CCCceEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCCcEEEECCCCCCCCcEEEEEcCCC---CEEEEECC
Confidence            378999999999999999998842211      123555555554444333222 23349999998754   67999999


Q ss_pred             ChhHHHHHHHHHHHHHHH
Q psy4897         531 THRDLANWARTLVQATHS  548 (774)
Q Consensus       531 t~~dl~~w~~~l~~~~~~  548 (774)
                      +..|+..|.++|..++..
T Consensus       108 s~~e~~~Wi~aI~~~i~~  125 (129)
T 2p0d_A          108 HETELRAWHRALRTVIER  125 (129)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            999999999999999865

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=98.31  E-value=2.1e-06  Score=90.14  Aligned_cols=90  Identities=19%  Similarity=0.254  Sum_probs=65.5

Q ss_pred             CCceEEEEEEeccceeEEecCCCCCh-hcccCcccccceeeEeeeccCC-CCCcEEEEEEeCCCCceeeEEEEecChhHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSP-EAWSTPAHVFPLVSTRLVSSSR-HSDVIVFSVRCGTPQGVATHHLRAETHRDL  535 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~-~~~~~~~~~~~l~~~r~~~~s~-~~~~~~f~~~~~t~~g~~~~~~~~et~~dl  535 (774)
                      ...|+++|++|++..|++|.+..... +.-..|....+|-.+.+..... ...++||.|.+...   .+|+|.+++..|+
T Consensus        36 ~K~WkrRWfVL~~~~L~yyK~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~~kk~~~F~I~t~~~---r~y~f~A~s~ee~  112 (263)
T 3a8p_A           36 RRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQSVPEHPKKEHVFCLSNSCG---DVYLFQATSQTDL  112 (263)
T ss_dssp             TCCCEEEEEEEETTEEEEESSCCC------CCCSEEEECTTCEEEECTTCSSCSSEEEEECTTS---CEEEEECSSHHHH
T ss_pred             CCCceEEEEEEcCCEEEEEecCcccccccccCccceEEcCCcEEEECCcCCCCCCEEEEEcCCC---cEEEEEcCCHHHH
Confidence            56899999999999999999865322 1234566666664333332222 23359999998633   7899999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy4897         536 ANWARTLVQATHSCV  550 (774)
Q Consensus       536 ~~w~~~l~~~~~~~~  550 (774)
                      ..|.++|..++....
T Consensus       113 ~~Wi~aI~~a~~~~~  127 (263)
T 3a8p_A          113 ENWVTAIHSACASLF  127 (263)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999987664

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=98.31  E-value=1.2e-06  Score=79.65  Aligned_cols=58  Identities=24%  Similarity=0.321  Sum_probs=49.6

Q ss_pred             CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      ..|++|..|.++|||+++| |++||+|++|||+++.++  .+....++ .++.+.|+|.|++
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~~~~~l~-~g~~v~l~v~R~g   91 (112)
T 2p3w_A           34 SSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVDS--SELQEAVL-TESPLLLEVRRGN   91 (112)
T ss_dssp             CSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSH--HHHHHHHH-HCSSEEEEEEETT
T ss_pred             CCCeEEEEECCCChHHHCC-CCCCCEEEEECCEECCCH--HHHHHHHh-CCCeEEEEEEECC
Confidence            4689999999999999998 999999999999999865  55555664 5788999998865

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=98.31  E-value=2.7e-06  Score=82.59  Aligned_cols=83  Identities=17%  Similarity=0.342  Sum_probs=55.5

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceee--Eee-eccCCCCCcEEEEEEeCCCCceeeEEEEecChhH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVS--TRL-VSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRD  534 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~--~r~-~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~d  534 (774)
                      ...|+++||||++..|++|.+.....   ..|....+|-.  +.+ +........+||.|.+..    ++|+|.+++..|
T Consensus        26 ~k~WkkRwfvL~~~~L~yyk~~~~~~---~~~~g~i~l~~~~~~~~~~~~~~~~~~~F~I~t~~----r~~~l~A~s~~e   98 (168)
T 2j59_M           26 IRPWKQMYVVLRGHSLYLYKDKREQT---TPSEEEQPISVNACLIDISYSETKRKNVFRLTTSD----CECLFQAEDRDD   98 (168)
T ss_dssp             --CCEEEEEEEETTEEEEESCTTCC-----------CEECSSCEEEECSSSCSCSSEEEEECSS----CEEEEECSSHHH
T ss_pred             CCCceEEEEEEeCCEEEEEECCcccc---cccCCceEecccceEEEeccccCCCCCEEEEEeCC----ceEEEEcCCHHH
Confidence            56799999999999999999885421   12333333322  111 111223345999999874    579999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy4897         535 LANWARTLVQATH  547 (774)
Q Consensus       535 l~~w~~~l~~~~~  547 (774)
                      +..|..+|..++.
T Consensus        99 ~~~Wi~ai~~~~~  111 (168)
T 2j59_M           99 MLAWIKTIQESSN  111 (168)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998863

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.30  E-value=1.6e-07  Score=82.94  Aligned_cols=56  Identities=27%  Similarity=0.454  Sum_probs=48.6

Q ss_pred             CeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceEEEEeeecc
Q psy4897          47 PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVVELEVGVGY  106 (774)
Q Consensus        47 gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V~L~V~R~~  106 (774)
                      |++|..|.++|||++ | |++||+|++|||+++.++  .+...+++.  .++.|.|+|.|++
T Consensus         2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g   59 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-K-IEVGDKIISADGKNYQSA--EKLIDYISSKKAGDKVTLKIEREE   59 (91)
T ss_dssp             CSSCCCCCCSSCCSS-C-CCSSCEEEEETTBCCSSH--HHHHHHHSSCCSSCEECEEEESSS
T ss_pred             ceEEEEECCCChHHH-c-CCCCCEEEEECCEECCCH--HHHHHHHHcCCCCCEEEEEEEECC
Confidence            678999999999998 7 999999999999999865  566777765  4889999999875

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.27  E-value=1.8e-06  Score=95.36  Aligned_cols=74  Identities=19%  Similarity=0.275  Sum_probs=62.7

Q ss_pred             CcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-cCceEEEEeeecc
Q psy4897          32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKVVELEVGVGY  106 (774)
Q Consensus        32 ~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~-ag~~V~L~V~R~~  106 (774)
                      .|+|+.+........+++|..|.++|||+++| |++||+|++|||++|.+++..+++.+++. .|+.|+|+|.|.+
T Consensus        85 ~giG~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g  159 (388)
T 1fc6_A           85 TGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPG  159 (388)
T ss_dssp             BBCSEEEEECTTCSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETT
T ss_pred             EEEEEEEEEeecCCCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCC
Confidence            47899887431224579999999999999998 99999999999999999988888888874 5788999998875

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.26  E-value=1.1e-06  Score=95.87  Aligned_cols=59  Identities=22%  Similarity=0.312  Sum_probs=51.2

Q ss_pred             CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceEEEEeeecc
Q psy4897          45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVVELEVGVGY  106 (774)
Q Consensus        45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V~L~V~R~~  106 (774)
                      ..|++|..|.++|||+++| |++||+|++|||++|.++  .+...++..  .|+.|+|+|.|++
T Consensus       262 ~~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g  322 (345)
T 3stj_A          262 QRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNG  322 (345)
T ss_dssp             CSSEEEEEECTTSHHHHHT-CCTTCEECEETTEECSCH--HHHHHHHHTSCTTCEEEEEEEETT
T ss_pred             CceEEEEEeccCChHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence            4689999999999999998 999999999999999966  455555654  6899999999976

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.25  E-value=1e-06  Score=76.59  Aligned_cols=59  Identities=17%  Similarity=0.137  Sum_probs=50.6

Q ss_pred             CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEecc
Q psy4897         200 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLRE  261 (774)
Q Consensus       200 ~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~  261 (774)
                      .++.|..+.|+++|+++| |++||+|++|||++|.+  ..++.++++.  .++.+.|+|.|.+.
T Consensus        19 ~G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~~v~~--~~d~~~~~~~~~~g~~v~l~v~R~g~   79 (87)
T 2i6v_A           19 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTD--PNVMNTLFQSMNEMTEMSLTVERDGQ   79 (87)
T ss_dssp             EEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTC--HHHHHHHHHTGGGCSEEEEEEEETTE
T ss_pred             EEEEEEeCCCCCHHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            356788888888999998 99999999999999987  7888888875  57889999988654

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=98.25  E-value=2.6e-06  Score=77.40  Aligned_cols=59  Identities=22%  Similarity=0.414  Sum_probs=53.0

Q ss_pred             CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecc
Q psy4897         199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE  261 (774)
Q Consensus       199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~  261 (774)
                      ..+++|..|.++|||+++| |++||+|++|||+++.+  ..++...++. ++.+.|+|.|.++
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~-~~~v~l~v~R~g~   92 (113)
T 2pzd_A           34 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQIRRGRE   92 (113)
T ss_dssp             SSCEEEEEEBTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHHH-CSSEEEEEEETTE
T ss_pred             CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEEEEECCE
Confidence            4679999999999999998 99999999999999986  7888888887 6899999998654

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.24  E-value=7e-07  Score=77.87  Aligned_cols=58  Identities=22%  Similarity=0.307  Sum_probs=47.7

Q ss_pred             CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-cCceEEEEeeecc
Q psy4897          46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKVVELEVGVGY  106 (774)
Q Consensus        46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~-ag~~V~L~V~R~~  106 (774)
                      .+++|..|.++|||+++| |++||+|++|||+++.++  .+....+.. .++.+.|+|.|++
T Consensus         4 ~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~~~~~l~~~~g~~v~l~v~R~g   62 (91)
T 2zpm_A            4 IEPVLENVQPNSAASXAG-LQAGDRIVXVDGQPLTQW--VTFVMLVRDNPGXSLALEIERQG   62 (91)
T ss_dssp             --CBCSEECTTSHHHHTT-CCTTCEEEEETTEECCCH--HHHHHHHHHCTTCCEEEEEEETT
T ss_pred             cCeEEEEECCCChHHhcC-CCCCCEEEEECCeEcCCH--HHHHHHHhcCCCCeEEEEEEECC
Confidence            356789999999999997 999999999999999976  556666654 4778999998865

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=98.23  E-value=3.7e-06  Score=79.25  Aligned_cols=60  Identities=15%  Similarity=0.210  Sum_probs=53.1

Q ss_pred             CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccc
Q psy4897         199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREV  262 (774)
Q Consensus       199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~  262 (774)
                      ..+++|..|.++|||+ +| |++||+|++|||+++.+  ..++...+..  .++.+.|+|.|.++.
T Consensus        56 ~~g~~V~~V~~~spA~-aG-L~~GD~I~~inG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~  117 (134)
T 2l97_A           56 TSGVIVRSVQSNMPAN-GH-LEKYDVITKVDDKEIAS--STDLQSALYNHSIGDTIKITYYRNGKE  117 (134)
T ss_dssp             CSCEEEEECSTTSGGG-TT-SCSSCEEEEETTEECCC--HHHHHHHHHHSSTTCEEEEEEEETTEE
T ss_pred             CCCEEEEEECCCCchH-HC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            3679999999999999 87 99999999999999987  7888888886  578999999987653

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.21  E-value=3.4e-06  Score=75.32  Aligned_cols=60  Identities=17%  Similarity=0.273  Sum_probs=52.4

Q ss_pred             CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccc
Q psy4897         199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREV  262 (774)
Q Consensus       199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~  262 (774)
                      ..+++|..|.+++||+. | |++||+|++|||+++.+  .+++...+..  .++.+.|+|.|.++.
T Consensus         6 ~~Gv~V~~V~~~spA~~-G-L~~GD~I~~Ing~~v~~--~~dl~~~l~~~~~g~~v~l~v~R~g~~   67 (100)
T 3i18_A            6 YDGVYVMSVKDDVPAAD-V-LHAGDLITEIDGNAFKS--SQEFIDYIHSKKVGDTVKINYKHGDKN   67 (100)
T ss_dssp             CCCEEEEEECTTSGGGG-T-CCTTCEEEEETTBCCSS--HHHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred             CCCEEEEEeCCCCchHH-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            35799999999999994 6 99999999999999987  7899998886  578999999986653

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.18  E-value=2e-06  Score=74.88  Aligned_cols=58  Identities=22%  Similarity=0.330  Sum_probs=50.8

Q ss_pred             CeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEEEEecc
Q psy4897         201 PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELEVKYLRE  261 (774)
Q Consensus       201 pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~~~  261 (774)
                      +++|..|.+++||+++| |++||+|++|||+++.+  ..++...++. .++.+.|+|.|.+.
T Consensus         5 ~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v~l~v~R~g~   63 (91)
T 2zpm_A            5 EPVLENVQPNSAASXAG-LQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLALEIERQGS   63 (91)
T ss_dssp             -CBCSEECTTSHHHHTT-CCTTCEEEEETTEECCC--HHHHHHHHHHCTTCCEEEEEEETTE
T ss_pred             CeEEEEECCCChHHhcC-CCCCCEEEEECCeEcCC--HHHHHHHHhcCCCCeEEEEEEECCe
Confidence            46789999999999998 99999999999999987  7899988886 57789999988654

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.18  E-value=5.5e-07  Score=79.40  Aligned_cols=58  Identities=24%  Similarity=0.433  Sum_probs=51.2

Q ss_pred             CeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccc
Q psy4897         201 PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREV  262 (774)
Q Consensus       201 pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~  262 (774)
                      +++|..|.++|||++ | |++||+|++|||+++.+  ..++..+|+.  .++.+.|+|.|.++.
T Consensus         2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~   61 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-K-IEVGDKIISADGKNYQS--AEKLIDYISSKKAGDKVTLKIEREEKE   61 (91)
T ss_dssp             CSSCCCCCCSSCCSS-C-CCSSCEEEEETTBCCSS--HHHHHHHHSSCCSSCEECEEEESSSCE
T ss_pred             ceEEEEECCCChHHH-c-CCCCCEEEEECCEECCC--HHHHHHHHHcCCCCCEEEEEEEECCEE
Confidence            578899999999998 7 99999999999999987  7899999886  478999999987653

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.17  E-value=2.1e-06  Score=75.89  Aligned_cols=60  Identities=20%  Similarity=0.354  Sum_probs=52.9

Q ss_pred             CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccc
Q psy4897         199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREV  262 (774)
Q Consensus       199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~  262 (774)
                      ..+++|..|.++|||++ | |++||+|++|||+++.+  ..++..+++.  .++.+.|+|.|.++.
T Consensus         4 ~~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~   65 (94)
T 2kl1_A            4 AKGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQPINT--SEQIVSYVREKQAGDRVRVTFIRDRKQ   65 (94)
T ss_dssp             CCCEECCCCCTTSTTBT-T-BCTTCEEEEETTBCCCC--HHHHHHHHHHSCTTCCEEEEEEETTEE
T ss_pred             CCcEEEEEECCCChHHh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            35789999999999998 7 99999999999999987  7889998887  588999999987653

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.17  E-value=1.6e-06  Score=96.36  Aligned_cols=73  Identities=19%  Similarity=0.266  Sum_probs=58.2

Q ss_pred             CCcccEEEEccCCCCC--CeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeeccc
Q psy4897          31 NNGLGISIKGGKENKM--PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYG  107 (774)
Q Consensus        31 ~~gLGfsI~GG~e~~~--gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~~  107 (774)
                      ..|+||++....+...  .++|..|.|||||+++| |++||+|++|||++|.++.   +..+++..+..|+|+|.|.+.
T Consensus        73 ~~G~~~~l~~~~~~~~~~~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R~g~  147 (403)
T 3k50_A           73 SYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYKEVV  147 (403)
T ss_dssp             BCSEEEEEEECTTCSSCEEEEEEEECTTSHHHHTT-CCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEEEEC
T ss_pred             ccceEEEEEEcCCCCcceeEEEEEeCCCChHHHcC-CCCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEeCCc
Confidence            4567777664433222  48899999999999998 9999999999999999985   455566688899999988753

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=98.16  E-value=8.4e-06  Score=79.93  Aligned_cols=84  Identities=14%  Similarity=0.096  Sum_probs=58.6

Q ss_pred             CCceEEEEEEeccceeEEecCC----CCChhcccCcccccceeeEeee---ccCCCCCc---------------------
Q psy4897         458 TDRWVSIFGAVTERELRLYESA----PWSPEAWSTPAHVFPLVSTRLV---SSSRHSDV---------------------  509 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~----p~~~~~~~~~~~~~~l~~~r~~---~~s~~~~~---------------------  509 (774)
                      ...|+++|+||++..|+.|.+.    +....-+..++..+..+  ..+   ........                     
T Consensus        21 ~k~WKkRwFVL~~~~L~Yyk~~~~~~~~~~~~G~I~L~~~~~v--e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   98 (169)
T 1btk_A           21 PLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCV--ETVVPEKNPPPERQIPRRGEESSEMEQISIIERFP   98 (169)
T ss_dssp             CCCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEE--EECCCCSSCCGGGCC---------CCTTHHHHCCC
T ss_pred             cCCCceEEEEEcCCEEEEEecCCccCCCCceeeEEECcceEEE--EeccCCCCcchhcccccccCccccccccccccccc
Confidence            4679999999999999999983    33333344444433211  111   11111111                     


Q ss_pred             EEEEEEeCCCCceeeEEEEecChhHHHHHHHHHHHHHH
Q psy4897         510 IVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATH  547 (774)
Q Consensus       510 ~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l~~~~~  547 (774)
                      ++|.|.++.    ++|||.++|..|+..|..+|.+++.
T Consensus        99 ~~F~I~t~~----rt~yl~A~s~~E~~eWi~aI~~~i~  132 (169)
T 1btk_A           99 YPFQVVYDE----GPLYVFSPTEELRKRWIHQLKNVIR  132 (169)
T ss_dssp             EEEEEEETT----CCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred             ccEEEEeCC----ceEEEEcCCHHHHHHHHHHHHHHHH
Confidence            899999875    5899999999999999999999885

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=98.16  E-value=2e-06  Score=92.42  Aligned_cols=59  Identities=20%  Similarity=0.230  Sum_probs=51.5

Q ss_pred             CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceEEEEeeecc
Q psy4897          45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVVELEVGVGY  106 (774)
Q Consensus        45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V~L~V~R~~  106 (774)
                      ..+++|..|.++|||+++| |++||+|++|||+++.++  .+...+++.  .++.|.|+|.|++
T Consensus       243 ~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g  303 (318)
T 1te0_A          243 LQGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISA--LETMDQVAEIRPGSVIPVVVMRDD  303 (318)
T ss_dssp             CCCEEEEEECTTSTTTTTC-CCTTCCEEEETTEECCCH--HHHHHHHHTSCTTCEEEEEEESSS
T ss_pred             CCcEEEEEeCCCChHHHCC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence            4689999999999999998 999999999999999976  556666664  6889999999875

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.15  E-value=4.2e-06  Score=74.14  Aligned_cols=57  Identities=14%  Similarity=0.196  Sum_probs=50.0

Q ss_pred             eEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-c-CcceEEEEEEecc
Q psy4897         202 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-A-GKLVELEVKYLRE  261 (774)
Q Consensus       202 i~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~-g~~V~L~V~R~~~  261 (774)
                      .+|..|.++|||+++| |++||+|++|||++|.+  ++++...|.. . ++.+.|+|.|.+.
T Consensus         4 p~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~d~~~~l~~~~~~~~v~l~v~R~g~   62 (95)
T 3id1_A            4 PVVGEIAANSIAAEAQ-IAPGTELKAVDGIETPD--WDAVRLQLVDKIGDESTTITVAPFGS   62 (95)
T ss_dssp             CBEEEECTTSHHHHTT-CCTTCEEEEETTEECSS--HHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred             CEEEeeCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHHhcCCCcEEEEEEECCC
Confidence            4789999999999998 99999999999999987  7899888876 3 3689999998764

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=98.13  E-value=5.4e-06  Score=75.27  Aligned_cols=59  Identities=22%  Similarity=0.290  Sum_probs=52.0

Q ss_pred             CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecc
Q psy4897         199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE  261 (774)
Q Consensus       199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~  261 (774)
                      ..+++|..|.+++||+++| |++||+|++|||+++.+  ..++...++ .++.+.|+|.|.+.
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~-~g~~v~l~v~R~g~   92 (112)
T 2p3w_A           34 SSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVD--SSELQEAVL-TESPLLLEVRRGND   92 (112)
T ss_dssp             CSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHH-HCSSEEEEEEETTE
T ss_pred             CCCeEEEEECCCChHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHh-CCCeEEEEEEECCE
Confidence            3579999999999999998 99999999999999987  788888884 57889999988654

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=98.10  E-value=3.6e-06  Score=90.63  Aligned_cols=70  Identities=21%  Similarity=0.327  Sum_probs=55.1

Q ss_pred             cccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceEEEEeee-cc
Q psy4897          33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVVELEVGV-GY  106 (774)
Q Consensus        33 gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V~L~V~R-~~  106 (774)
                      .||+.+..- +...+++|..|.++|||+++| |++||+|++|||++|.++  .+...++..  .++.|+|+|.| ++
T Consensus       230 ~lGi~~~~~-~~~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~~g  302 (324)
T 1y8t_A          230 SLGVQVTND-KDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDPSG  302 (324)
T ss_dssp             ECCEEEESC-SSSSSEEEEEECTTSTTTTTT-CCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEECSSC
T ss_pred             ccceEeeec-cCCCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCC
Confidence            455555421 224689999999999999998 999999999999999976  445555553  58899999998 64

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=98.08  E-value=1.3e-05  Score=87.49  Aligned_cols=85  Identities=13%  Similarity=0.252  Sum_probs=62.8

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCC------------Cc----
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTP------------QG----  521 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~------------~g----  521 (774)
                      ...|+++|++|++..|++|.++...     .|....+|-.+.+.........+||.|.++..            .|    
T Consensus       226 ~k~WkkRwFVL~~~~L~Yyk~~~~~-----~p~G~I~L~~~~v~~~~~~~~~~~F~I~~~~~~~~~~~~~k~~~~g~~v~  300 (347)
T 2r09_A          226 VKTWKRRWFILTDNCLYYFEYTTDK-----EPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVE  300 (347)
T ss_dssp             SCCEEEEEEEEETTEEEEESSTTCS-----SCSEEEECTTCEEEEECCSSCSSEEEEECSSSTTCCCCCEEECTTSCEEE
T ss_pred             cccceeEEEEEcCCEEEEEcCCCcc-----CCcEEEEcCCeEEEEccCCCCCCEEEEEeCCccccccccccccccccccc
Confidence            4679999999999999999988653     34444554443433222334459999997632            11    


Q ss_pred             --eeeEEEEecChhHHHHHHHHHHHHHH
Q psy4897         522 --VATHHLRAETHRDLANWARTLVQATH  547 (774)
Q Consensus       522 --~~~~~~~~et~~dl~~w~~~l~~~~~  547 (774)
                        -++++|+++|..|+..|..+|.+++.
T Consensus       301 ~~~r~y~l~A~s~ee~~~Wi~aI~~ai~  328 (347)
T 2r09_A          301 GNHVVYRISAPSPEEKEEWMKSIKASIS  328 (347)
T ss_dssp             CCCSCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence              26899999999999999999999874

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=98.04  E-value=3.9e-06  Score=78.42  Aligned_cols=57  Identities=25%  Similarity=0.263  Sum_probs=48.0

Q ss_pred             CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHH--hcCceEEEEeeecc
Q psy4897          45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK--RAGKVVELEVGVGY  106 (774)
Q Consensus        45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk--~ag~~V~L~V~R~~  106 (774)
                      ..+++|..|.+++||+++  |++||+|++|||++|.++  .+....++  ..++.+.|+| |++
T Consensus        24 ~~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~~~--~dl~~~l~~~~~g~~v~l~V-R~g   82 (125)
T 2hga_A           24 PDGVQIDSVVPGSPASKV--LTPGLVIESINGMPTSNL--TTYSAALKTISVGEVINITT-DQG   82 (125)
T ss_dssp             CCCEEEEEECSSSGGGGT--SCTTCEEEEETTEECSSH--HHHHHHHTTCCTTCEEEEEE-TTE
T ss_pred             CCceEEEEECCCChHHHh--cCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEE-ECC
Confidence            368999999999999997  999999999999999976  44555565  3578999999 765

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=98.01  E-value=3.9e-05  Score=85.13  Aligned_cols=82  Identities=11%  Similarity=0.169  Sum_probs=58.7

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLAN  537 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~  537 (774)
                      ...|+++||+|++..|+.|.....      .|....+|..+.+........++||.|.++++  -++++|.+||..|+..
T Consensus       317 ~~~W~rrwfvl~~~~l~y~~~~~~------~~~~~~~l~~~~v~~~~~~~r~~cF~i~~~~~--~~~~~l~A~s~~e~~~  388 (407)
T 4h8s_A          317 TTTWERLYFFTQGGNLMCQPRGAV------AGGLIQDLDNCSVMAVDCEDRRYCFQITTPNG--KSGIILQAESRKENEE  388 (407)
T ss_dssp             CEEEEEEEEEECSSCEECCCTTCS------SCCCCBCSSCCEEEEECCTTCSSEEEEECTTS--SCCEEEECSSSHHHHH
T ss_pred             CCCceEEEEEEECCEEEEEeCCCC------CCCeEEECCceEEEECCCCCCCceEEEEecCC--CceEEEEcCCHHHHHH
Confidence            567999999999999999976542      23333444333222222222349999998753  3589999999999999


Q ss_pred             HHHHHHHHHH
Q psy4897         538 WARTLVQATH  547 (774)
Q Consensus       538 w~~~l~~~~~  547 (774)
                      |..+|..++.
T Consensus       389 Wi~ai~~a~~  398 (407)
T 4h8s_A          389 WICAINNISR  398 (407)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.00  E-value=8.3e-06  Score=82.47  Aligned_cols=69  Identities=17%  Similarity=0.143  Sum_probs=51.8

Q ss_pred             eEEeCCCCCCCCeEEEEecCCChhhhccCCCCC-CEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEEEEec
Q psy4897         190 ISIKGGKENKMPILISKIFKGMAADQTEQLYVG-DAILSVNGEDLREATHDEAVKALKR-AGKLVELEVKYLR  260 (774)
Q Consensus       190 fsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~G-D~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~~  260 (774)
                      ++...+.....+++|..|.++|||+++| |++| |+|++|||++|.+++.... .+++. .++.+.|+|.|.+
T Consensus         6 ~~~~~~~~~~~G~~V~~V~~~SpA~~AG-L~~G~D~I~~ing~~v~~~~~~~~-~~~~~~~g~~v~l~v~R~~   76 (209)
T 3rle_A            6 QSVEIPGGGTEGYHVLRVQENSPGHRAG-LEPFFDFIVSINGSRLNKDNDTLK-DLLKANVEKPVKMLIYSSK   76 (209)
T ss_dssp             --CCCTTSSSEEEEEEEECTTSHHHHTT-CCTTTEEEEEETTEECCSSSSHHH-HHHHHTTTSCEEEEEEETT
T ss_pred             hhhhccCCCCCEEEEEEECCCCHHHHCC-CCcCCeEEEEECCEECcCHHHHHH-HHHhcCCCCEEEEEEEecC
Confidence            3333333345689999999999999998 9999 9999999999988643222 33333 6789999998864

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=97.99  E-value=1.4e-05  Score=93.16  Aligned_cols=69  Identities=14%  Similarity=0.213  Sum_probs=55.8

Q ss_pred             CCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHH--hcCceEEEEeeecc
Q psy4897          31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK--RAGKVVELEVGVGY  106 (774)
Q Consensus        31 ~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk--~ag~~V~L~V~R~~  106 (774)
                      ..+||+.+...   +.|++|..|.+||||+++| |++||+|++|||++|. ..  +...+++  +.|+.|+|+|.|++
T Consensus       484 ~~~lG~~~~~~---~~gv~V~~V~~~spA~~AG-L~~GD~I~aInG~~v~-~~--~l~~~l~~~~~g~~v~l~v~R~g  554 (597)
T 4fgm_A          484 RVNFGAKYKAS---PQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQAT-EQ--SVKRILERYIPGDTVTIHAFRRD  554 (597)
T ss_dssp             SCCCSEEEEEE---TTEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC-TT--THHHHHTTCCTTCEEEEEEEETT
T ss_pred             ccccceEEecc---CCeEEEEEeCCCChHHHCC-CCCCCEEEEECCEECC-HH--HHHHHHHhcCCCCEEEEEEEECC
Confidence            35899988643   3479999999999999998 9999999999999994 32  3344444  46899999999976

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=97.98  E-value=6.6e-06  Score=74.08  Aligned_cols=58  Identities=17%  Similarity=0.123  Sum_probs=48.1

Q ss_pred             CeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEecc
Q psy4897         201 PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLRE  261 (774)
Q Consensus       201 pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~  261 (774)
                      ++.|..+.|+++|+++| |++||+|++|||++|.+  ..++..++..  .++.+.|+|.|.+.
T Consensus        38 G~~V~~~~pas~A~~aG-l~~GDvI~~ing~~v~~--~~d~~~~~~~~~~g~~v~l~v~R~g~   97 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTD--PNVMNTLFQSMNEMTEMSLTVERDGQ   97 (105)
T ss_dssp             EEEEEECSCTHHHHHHT-CCTTCEEEEETTEETTS--TTHHHHHHHHHTTCSEEEEEEEETTE
T ss_pred             EEEEecCCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCeEEEEEEECCE
Confidence            45677778888889998 99999999999999988  5677777764  57889999988654

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=97.97  E-value=7.6e-05  Score=72.60  Aligned_cols=86  Identities=13%  Similarity=0.099  Sum_probs=61.0

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEee---eccC----CCCCcEEEEEEeCCCCceeeEEEEec
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRL---VSSS----RHSDVIVFSVRCGTPQGVATHHLRAE  530 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~---~~~s----~~~~~~~f~~~~~t~~g~~~~~~~~e  530 (774)
                      ..+|+++|++|++..|+.|.+.....    .|....+|-..+.   +...    .....++|.|.++.    +++||.++
T Consensus        33 ~knWKkRwFVL~~~~L~Yyk~~~~~~----~~~G~I~L~~~~~v~~~~~~~~~~~~~~~~~f~i~t~~----rt~~l~A~  104 (164)
T 2lul_A           33 PLNYKERLFVLTKSMLTYYEGRAEKK----YRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHDA----NTLYIFAP  104 (164)
T ss_dssp             CCCEEEEEEEEESSEEEEECCCSSSC----CCCCEEEGGGCCEEEECCCCSSSCCSSSCSEEEEECSS----CEEEEECS
T ss_pred             CCCceeEEEEEECCEEEEEeccCccc----ccccEEEEeeeEEEEeccccccCcccccceeEEEecCC----cEEEEECC
Confidence            46799999999999999998764322    2333333333222   2221    12234899999885    58999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHH
Q psy4897         531 THRDLANWARTLVQATHSCVL  551 (774)
Q Consensus       531 t~~dl~~w~~~l~~~~~~~~~  551 (774)
                      |..|+..|..+|.++|...-.
T Consensus       105 s~~e~~~Wi~aL~~~i~~n~~  125 (164)
T 2lul_A          105 SPQSRDLWVKKLKEEIKNNNN  125 (164)
T ss_dssp             SHHHHHHHHHHHHHHHTTCSC
T ss_pred             CHHHHHHHHHHHHHHHHHChh
Confidence            999999999999999865443

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=97.97  E-value=5.5e-06  Score=90.25  Aligned_cols=58  Identities=28%  Similarity=0.353  Sum_probs=50.4

Q ss_pred             CCeEEEEecCCCHHhhhCCCCC-----------CCEEEEECCEecCCCCHHHHHHHHH--hcCceEEEEeeecc
Q psy4897          46 MPILISKIFKGMAADQTEQLYV-----------GDAILSVNGEDLREATHDEAVKALK--RAGKVVELEVGVGY  106 (774)
Q Consensus        46 ~gi~Vs~V~pGSpAaraG~Lqv-----------GD~ILsVNG~~V~~~sh~eaV~lLk--~ag~~V~L~V~R~~  106 (774)
                      .|++|..|.++|||+++| |++           ||+|++|||++|.++.  +...++.  +.|+.|+|+|.|++
T Consensus       251 ~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~~~~--dl~~~l~~~~~g~~v~l~v~R~g  321 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVSNGS--DLYRILDQCKVGDEVTVEVLRGD  321 (348)
T ss_dssp             SSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCSSSH--HHHHHHTTCCTTCEEEEEEECSS
T ss_pred             ceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeCCHH--HHHHHHHhCCCcCEEEEEEEECC
Confidence            589999999999999998 999           9999999999999884  4555554  45899999999876

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=97.93  E-value=1.7e-05  Score=89.01  Aligned_cols=58  Identities=28%  Similarity=0.365  Sum_probs=52.6

Q ss_pred             CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      .|++|..|.++|||+++| |++||+|++|||++|.++  .+.+.+++..+..+.|+|.|++
T Consensus       363 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~--~~~~~~l~~~~~~v~l~v~R~g  420 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIVRGN  420 (436)
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCeEEEEEEECC
Confidence            589999999999999998 999999999999999865  7788888887779999999875

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=97.92  E-value=1.5e-05  Score=87.86  Aligned_cols=82  Identities=13%  Similarity=0.183  Sum_probs=59.3

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLAN  537 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~  537 (774)
                      ...|+++||+|+++.|+.|.+ +.     ..|....+|..+.+........++||.|.+++  |-++|+|.+||..|+..
T Consensus       294 ~~~WkkRwfvL~~~~L~y~k~-~~-----~~~~~~i~l~~~~v~~~~~~~r~~~F~i~t~~--~~~~~~l~A~s~~e~~~  365 (385)
T 2q13_A          294 SSTWDRQFYFTQGGNLMSQAR-GD-----VAGGLAMDIDNCSVMAVDCEDRRYCFQITSFD--GKKSSILQAESKKDHEE  365 (385)
T ss_dssp             --CCEEEEEEEETTEEEEECS-SC-----SSCEEEEECTTCEEEEECCTTCSSEEEEECTT--SCBCCCEECSSHHHHHH
T ss_pred             cCCceeEEEEEECCEEEEecC-CC-----cCCCceEEccceEEEeccccCCCceEEEEeCC--CCeEEEEEeCCHHHHHH
Confidence            346999999999999999988 32     23444555544333222223334999999875  33689999999999999


Q ss_pred             HHHHHHHHHH
Q psy4897         538 WARTLVQATH  547 (774)
Q Consensus       538 w~~~l~~~~~  547 (774)
                      |..+|..+++
T Consensus       366 Wi~ai~~~~~  375 (385)
T 2q13_A          366 WICTINNISK  375 (385)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=97.90  E-value=2.2e-05  Score=86.77  Aligned_cols=75  Identities=19%  Similarity=0.280  Sum_probs=62.7

Q ss_pred             CCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEEEEecc
Q psy4897         186 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELEVKYLRE  261 (774)
Q Consensus       186 ~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~~~  261 (774)
                      .++|+.+........+++|..|.+++||+++| |++||+|++|||+++.+++.+++..+|+. .+..|.|+|.|.+.
T Consensus        85 ~giG~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~  160 (388)
T 1fc6_A           85 TGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA  160 (388)
T ss_dssp             BBCSEEEEECTTCSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             EEEEEEEEEeecCCCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence            46788776420113579999999999999998 99999999999999999888999998875 67889999988654

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.90  E-value=3.1e-05  Score=73.05  Aligned_cols=87  Identities=17%  Similarity=0.308  Sum_probs=71.1

Q ss_pred             CCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeecc-CCCCCcEEEEEEeCCCCceeeEEEEecChhHH
Q psy4897         457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS-SRHSDVIVFSVRCGTPQGVATHHLRAETHRDL  535 (774)
Q Consensus       457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~-s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl  535 (774)
                      ....|+++|++|++..|+.|.+...+.   ..|....+|--+++... +....+++|.+..++..|-..+||++||..++
T Consensus        24 tlK~~KrrWFvlk~~~L~YyK~kee~~---~ePig~I~L~gceV~pd~~~~~~kf~ikl~iPs~~g~r~y~l~cdsEeqy  100 (137)
T 2ys3_A           24 TLKGYRQHWVVFKETTLSYYKSQDEAP---GDPIQQLNLKGCEVVPDVNVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQY  100 (137)
T ss_dssp             CSSSSCCCEEEECSSCEEEESSTTTTT---SCCSCCBCTTTCEEEECCBGGGTBEEEEEEEECSSSEEEEEEEESSHHHH
T ss_pred             ccccceeEEEEEeCCEEEEECCchhcc---CCCceEEECCCCEEeccccccCCceEEEEEccCCCCceEEEEECCCHHHH
Confidence            567899999999999999998877432   57777777777776554 22344589888888777889999999999999


Q ss_pred             HHHHHHHHHHH
Q psy4897         536 ANWARTLVQAT  546 (774)
Q Consensus       536 ~~w~~~l~~~~  546 (774)
                      +.|..++..|.
T Consensus       101 ~~WMaA~rlAs  111 (137)
T 2ys3_A          101 ARWMAGCRLAS  111 (137)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999999886

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=97.87  E-value=1.8e-05  Score=85.29  Aligned_cols=58  Identities=22%  Similarity=0.422  Sum_probs=50.3

Q ss_pred             CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      ..|++|..|.++|||+++| |++||+|++|||++|.++  .+...+++. ++.|.|+|.|++
T Consensus       255 ~~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~~--~~l~~~l~~-~~~v~l~v~R~g  312 (325)
T 1lcy_A          255 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNA--EDVYEAVRT-QSQLAVQIRRGR  312 (325)
T ss_dssp             SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSH--HHHHHHHTT-CSSEEEEEEETT
T ss_pred             CCCeEEEEeCcCChHHHCC-CCCCCEEEEECCEEcCCH--HHHHHHHhC-CCeEEEEEEECC
Confidence            3589999999999999998 999999999999999865  555666665 688999999875

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=97.83  E-value=2.4e-05  Score=82.72  Aligned_cols=91  Identities=16%  Similarity=0.276  Sum_probs=65.9

Q ss_pred             CCCceEEEEEEeccceeEEecCCCCChhc-ccCcccccceeeEeeeccCC-CCCcEEEEEEeCCCCceeeEEEEecChhH
Q psy4897         457 STDRWVSIFGAVTERELRLYESAPWSPEA-WSTPAHVFPLVSTRLVSSSR-HSDVIVFSVRCGTPQGVATHHLRAETHRD  534 (774)
Q Consensus       457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~-~~~~~~~~~l~~~r~~~~s~-~~~~~~f~~~~~t~~g~~~~~~~~et~~d  534 (774)
                      ....|+.+||+|++..||+|.+.-....+ ...|....+|...-+..... ...+++|.|++..+   ..|+|.+++..|
T Consensus        35 ~~r~Wkk~w~VLkg~~L~fYKde~~~~~~~~~~p~~~I~L~ga~v~~a~d~~kKk~vF~L~t~~g---~~yLFQA~s~eE  111 (279)
T 3a8n_A           35 TRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVPEHPKKDFVFCLSNSLG---DAFLFQTTSQTE  111 (279)
T ss_dssp             CCCCCEEEEEEEETTEECCBCCC--------CCCSSCCBCCSCEECCCTTSSSSCSCCCEEETTT---EEEECCCSCHHH
T ss_pred             cCCCCeEEEEEEeCCEEEEEecccccccccccCCCceEeccCcEEEeccccCCCCcEEEEEcCCC---CEEEEeCCCHHH
Confidence            35789999999999999999986643222 45666667665444432222 23349999998744   789999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy4897         535 LANWARTLVQATHSCV  550 (774)
Q Consensus       535 l~~w~~~l~~~~~~~~  550 (774)
                      |..|.++|..++....
T Consensus       112 m~~WI~aI~~a~~~~~  127 (279)
T 3a8n_A          112 LENWITAIHSACAAAV  127 (279)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhc
Confidence            9999999999987544

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=97.83  E-value=3.4e-05  Score=82.86  Aligned_cols=61  Identities=16%  Similarity=0.199  Sum_probs=54.5

Q ss_pred             CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccc
Q psy4897         199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREV  262 (774)
Q Consensus       199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~  262 (774)
                      ..+++|..|.+++||+++| |++||+|++|||+++.+  ..++..+|+.  .++.+.|+|.|.++.
T Consensus       243 ~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~  305 (318)
T 1te0_A          243 LQGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDDKQ  305 (318)
T ss_dssp             CCCEEEEEECTTSTTTTTC-CCTTCCEEEETTEECCC--HHHHHHHHHTSCTTCEEEEEEESSSCE
T ss_pred             CCcEEEEEeCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            3679999999999999998 99999999999999987  7899999985  678999999987653

>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1

Probab=97.81  E-value=5.5e-05  Score=72.53  Aligned_cols=39  Identities=15%  Similarity=0.445  Sum_probs=34.8

Q ss_pred             cEEEEEEeCCCCceeeEEEEecChhHHHHHHHHHHHHHHH
Q psy4897         509 VIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHS  548 (774)
Q Consensus       509 ~~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l~~~~~~  548 (774)
                      .++|.|.+++. +-.+++|+++|..||.-|.++|..|+..
T Consensus       111 ~~vF~I~~~~~-~~~~~~laAds~Eem~dW~kaIreaa~~  149 (150)
T 2fjl_A          111 LFVFSISMPSV-AQWSLDVAADSQEELQDWVKKIREVAQT  149 (150)
T ss_dssp             SCEEEEECTTT-SSCCEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred             ceEEEEeCCCC-CCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence            49999999865 6789999999999999999999998754

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=97.80  E-value=2.3e-05  Score=88.43  Aligned_cols=58  Identities=16%  Similarity=0.153  Sum_probs=52.5

Q ss_pred             CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      .|++|..|.++|||+++| |++||+|++|||++|.++  .+...++++.++.+.|.|.|++
T Consensus       386 ~Gv~V~~V~~gspA~~aG-L~~GD~I~~Vng~~v~~~--~~~~~~l~~~~~~v~l~v~R~g  443 (451)
T 3pv2_A          386 IGVQVVGASENSAGWRAG-IRPGDIIISANKKPVTDV--KSLQTIAQEKKKELLVQVLRGP  443 (451)
T ss_dssp             EEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSH--HHHHHHTTSSCSCEEEEEEETT
T ss_pred             CceEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHhcCCCeEEEEEEECC
Confidence            479999999999999998 999999999999999865  6778888888889999998875

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=97.80  E-value=3.3e-05  Score=84.16  Aligned_cols=61  Identities=21%  Similarity=0.320  Sum_probs=55.1

Q ss_pred             CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccc
Q psy4897         199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREV  262 (774)
Q Consensus       199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~  262 (774)
                      ..+++|..|.++|||+++| |++||+|++|||++|.+  ..++...|..  .|+.+.|+|.|.++.
T Consensus       262 ~~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~  324 (345)
T 3stj_A          262 QRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRNGKP  324 (345)
T ss_dssp             CSSEEEEEECTTSHHHHHT-CCTTCEECEETTEECSC--HHHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred             CceEEEEEeccCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            4689999999999999998 99999999999999987  8899999976  689999999997653

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=97.79  E-value=3.5e-05  Score=71.86  Aligned_cols=58  Identities=22%  Similarity=0.259  Sum_probs=50.9

Q ss_pred             CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEecc
Q psy4897         199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLRE  261 (774)
Q Consensus       199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~  261 (774)
                      ..+++|..|.+++||+++  |++||+|++|||++|.+  ..++...++.  .++.+.|+| |.++
T Consensus        24 ~~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~~--~~dl~~~l~~~~~g~~v~l~V-R~g~   83 (125)
T 2hga_A           24 PDGVQIDSVVPGSPASKV--LTPGLVIESINGMPTSN--LTTYSAALKTISVGEVINITT-DQGT   83 (125)
T ss_dssp             CCCEEEEEECSSSGGGGT--SCTTCEEEEETTEECSS--HHHHHHHHTTCCTTCEEEEEE-TTEE
T ss_pred             CCceEEEEECCCChHHHh--cCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEE-ECCE
Confidence            357899999999999987  99999999999999987  7888888874  578899999 7665

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=97.78  E-value=5.6e-05  Score=81.24  Aligned_cols=72  Identities=19%  Similarity=0.306  Sum_probs=59.9

Q ss_pred             CCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEE-ecc
Q psy4897         186 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKY-LRE  261 (774)
Q Consensus       186 ~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R-~~~  261 (774)
                      ..+|+.+... +...+++|..|.+++||+++| |++||+|++|||+++.+  ..++...+..  .++.+.|+|.| .++
T Consensus       229 ~~lGi~~~~~-~~~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~~g~  303 (324)
T 1y8t_A          229 ASLGVQVTND-KDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINS--ADALVAAVRSKAPGATVALTFQDPSGG  303 (324)
T ss_dssp             EECCEEEESC-SSSSSEEEEEECTTSTTTTTT-CCTTCEEEEETTEECCS--HHHHHHHHHTSCTTCEEEEEEECSSCC
T ss_pred             cccceEeeec-cCCCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCCC
Confidence            4577777542 224689999999999999998 99999999999999987  7888888875  57899999998 654

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=97.72  E-value=3.9e-05  Score=80.59  Aligned_cols=86  Identities=15%  Similarity=0.211  Sum_probs=60.4

Q ss_pred             ceEEEEEEeccc-------eeEEecCCCCChhcccCcccccceeeEeee-ccCCCCCcEEEEEEeCCCCceeeEEEEecC
Q psy4897         460 RWVSIFGAVTER-------ELRLYESAPWSPEAWSTPAHVFPLVSTRLV-SSSRHSDVIVFSVRCGTPQGVATHHLRAET  531 (774)
Q Consensus       460 ~w~~~~~~l~~~-------~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~-~~s~~~~~~~f~~~~~t~~g~~~~~~~~et  531 (774)
                      .|+++|++|++.       .|+.|++.......-..|....+|-...-| ........++|.|.+..    ++|+|.+||
T Consensus        21 ~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~p~g~I~L~~~~~V~~~~~~~~~~~F~I~t~~----rty~l~A~s   96 (264)
T 1qqg_A           21 SMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADSKNKHLVALYTRD----EHFAIAADS   96 (264)
T ss_dssp             TCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECCSSCSSEEEEEESS----CEEEEECSS
T ss_pred             CCEeEEEEEECCCCCCCCCEEEEECCCccccccccCcceEEEeeceEEEEeccCCCCCcEEEEEECC----EEEEEEeCC
Confidence            489999999999       999999765300000245556665554322 22233445999999873    689999999


Q ss_pred             hhHHHHHHHHHHHHHHHH
Q psy4897         532 HRDLANWARTLVQATHSC  549 (774)
Q Consensus       532 ~~dl~~w~~~l~~~~~~~  549 (774)
                      ..|+..|..+|.+++...
T Consensus        97 e~e~~~Wi~aL~~~~~~~  114 (264)
T 1qqg_A           97 EAEQDSWYQALLQLHNRA  114 (264)
T ss_dssp             HHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999999887654

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=97.69  E-value=6.1e-05  Score=81.21  Aligned_cols=59  Identities=22%  Similarity=0.414  Sum_probs=53.1

Q ss_pred             CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecc
Q psy4897         199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE  261 (774)
Q Consensus       199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~  261 (774)
                      ..+++|..|.+++||+++| |++||+|++|||++|.+  .+++.++++. ++.+.|+|.|.++
T Consensus       255 ~~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~--~~~l~~~l~~-~~~v~l~v~R~g~  313 (325)
T 1lcy_A          255 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQIRRGRE  313 (325)
T ss_dssp             SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHTT-CSSEEEEEEETTE
T ss_pred             CCCeEEEEeCcCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHhC-CCeEEEEEEECCE
Confidence            3589999999999999998 99999999999999987  7888888876 6899999998765

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=97.62  E-value=4.7e-05  Score=84.62  Aligned_cols=73  Identities=19%  Similarity=0.267  Sum_probs=56.6

Q ss_pred             CCCcceEEeCCCCCC--CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecc
Q psy4897         185 NNGLGISIKGGKENK--MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE  261 (774)
Q Consensus       185 ~~~LGfsi~gg~~~~--~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~  261 (774)
                      ..++||.+....+..  ..++|..|.++|||+++| |++||+|++|||++|.++.   +..+|+..+..|+|+|.|.+.
T Consensus        73 ~~G~~~~l~~~~~~~~~~~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R~g~  147 (403)
T 3k50_A           73 SYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYKEVV  147 (403)
T ss_dssp             BCSEEEEEEECTTCSSCEEEEEEEECTTSHHHHTT-CCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEEEEC
T ss_pred             ccceEEEEEEcCCCCcceeEEEEEeCCCChHHHcC-CCCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEeCCc
Confidence            345666655332211  247899999999999998 9999999999999999864   556666678899999988765

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=97.60  E-value=0.00018  Score=79.97  Aligned_cols=88  Identities=15%  Similarity=0.321  Sum_probs=66.3

Q ss_pred             CCceEEEEEEec-cceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897         458 TDRWVSIFGAVT-ERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLA  536 (774)
Q Consensus       458 ~~~w~~~~~~l~-~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~  536 (774)
                      ...|+++|++|+ ++.|+.|.+.|.+......|+..+.+....+... +....++|.+++.....+..+.|.+++..|..
T Consensus        19 ~k~Wk~r~fvL~~~~~l~yyk~~~~~~~~~~i~l~~~~~~~~~~~~~-~~~~~~~f~I~~~~~~~~~~r~~~~~~~ee~e   97 (446)
T 4ejn_A           19 IKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKT-ERPRPNTFIIRCLQWTTVIERTFHVETPEERE   97 (446)
T ss_dssp             TTEEEEEEEEEETTSBEEEESSCC-------CCCGGGBCTTCEEEEE-CSSSTTEEEEEEEETTEEEEEEEECSSHHHHH
T ss_pred             cccccceEEEEeeCCEEEEEecCCCCCccCcccccCccccceeecCC-CCCCCceeEEEcCCCceeeeeEEecCCHHHHH
Confidence            568999999997 8999999999988888888999987765443332 22224799999887767777899999999999


Q ss_pred             HHHHHHHHHH
Q psy4897         537 NWARTLVQAT  546 (774)
Q Consensus       537 ~w~~~l~~~~  546 (774)
                      .|..+|.+++
T Consensus        98 ~W~~ai~~~i  107 (446)
T 4ejn_A           98 EWTTAIQTVA  107 (446)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhh
Confidence            9999999885

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=97.59  E-value=7.1e-05  Score=81.43  Aligned_cols=60  Identities=25%  Similarity=0.273  Sum_probs=53.6

Q ss_pred             CCeEEEEecCCChhhhccCCCC-----------CCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccc
Q psy4897         200 MPILISKIFKGMAADQTEQLYV-----------GDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREV  262 (774)
Q Consensus       200 ~pi~Is~V~pgspA~~aG~L~~-----------GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~  262 (774)
                      .+++|..|.+++||+++| |++           ||+|++|||++|.+  .+++...|..  .|+.++|+|.|.++.
T Consensus       251 ~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~~--~~dl~~~l~~~~~g~~v~l~v~R~g~~  323 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVSN--GSDLYRILDQCKVGDEVTVEVLRGDHK  323 (348)
T ss_dssp             SSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCSS--SHHHHHHHTTCCTTCEEEEEEECSSSE
T ss_pred             ceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeCC--HHHHHHHHHhCCCcCEEEEEEEECCEE
Confidence            589999999999999998 999           99999999999988  6788888865  578999999987653

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=97.55  E-value=1.1e-05  Score=87.21  Aligned_cols=58  Identities=22%  Similarity=0.336  Sum_probs=0.0

Q ss_pred             CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      ..|++|..|.++|||+++| |++||+|++|||++|.++.  +...+++. ++.|+|+|.|++
T Consensus       253 ~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~--~~~~~l~~-~~~v~l~v~R~g  310 (332)
T 3num_A          253 ISGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVVSAN--DVSDVIKR-ESTLNMVVRRGN  310 (332)
T ss_dssp             --------------------------------------------------------------
T ss_pred             CCceEEEEeccCCChHHcC-CCCCCEEEEECCEECCCHH--HHHHHHhC-CCeEEEEEEECC
Confidence            3589999999999999998 9999999999999998764  44455554 788999998875

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=97.53  E-value=9e-05  Score=86.36  Aligned_cols=70  Identities=17%  Similarity=0.284  Sum_probs=57.1

Q ss_pred             CCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccc
Q psy4897         186 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREV  262 (774)
Q Consensus       186 ~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~  262 (774)
                      ..+|+.+...   ..+++|..|.++|||+++| |++||+|++|||++|.   ..++.++|+.  .|+.|.|+|.|.++.
T Consensus       485 ~~lG~~~~~~---~~gv~V~~V~~~spA~~AG-L~~GD~I~aInG~~v~---~~~l~~~l~~~~~g~~v~l~v~R~g~~  556 (597)
T 4fgm_A          485 VNFGAKYKAS---PQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQAT---EQSVKRILERYIPGDTVTIHAFRRDEL  556 (597)
T ss_dssp             CCCSEEEEEE---TTEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC---TTTHHHHHTTCCTTCEEEEEEEETTEE
T ss_pred             cccceEEecc---CCeEEEEEeCCCChHHHCC-CCCCCEEEEECCEECC---HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            4688877542   3479999999999999998 9999999999999994   3566666664  688999999997653

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=97.44  E-value=0.00054  Score=72.40  Aligned_cols=90  Identities=8%  Similarity=0.051  Sum_probs=59.2

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhc--c--cCcccccceeeEeeec-cCCCCCcEEEEEEeCCCC--ceeeEEEEec
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEA--W--STPAHVFPLVSTRLVS-SSRHSDVIVFSVRCGTPQ--GVATHHLRAE  530 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~--~--~~~~~~~~l~~~r~~~-~s~~~~~~~f~~~~~t~~--g~~~~~~~~e  530 (774)
                      ..+|+++|++|++..||+|..-. +++.  +  ..++..+.+|...=.+ .-.....+||+|+++..+  ....|||++|
T Consensus       171 ~k~WkkRyfvLr~sgLyy~~K~~-sk~~r~l~~l~~L~~~~VY~~~~~kkk~kaPt~~~F~ik~~~~~~~~~~~~~~cae  249 (281)
T 4gmv_A          171 KKSWKKRYFLLRASGIYYVPKGK-AKVSRDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKHPQIQKKSQYIKYLCCD  249 (281)
T ss_dssp             SSCEEEEEEEECSSCEEEC----------CCEEEECGGGCEEEEESSHHHHTCCSCSCEEEEECTTCCSCCTTCEEEECS
T ss_pred             CCCCeEEEEEEeCCEEEEEeCCC-CCccccceEEEEcCCcEEEEecccccccCCCCCcEEEEecCccCCCCCceEEEEeC
Confidence            46899999999999999888753 3333  1  2356676666542000 011122499999986432  2347999999


Q ss_pred             ChhHHHHHHHHHHHHHHH
Q psy4897         531 THRDLANWARTLVQATHS  548 (774)
Q Consensus       531 t~~dl~~w~~~l~~~~~~  548 (774)
                      +.+++..|..+|--|-|.
T Consensus       250 de~~~~~Wv~Air~ak~g  267 (281)
T 4gmv_A          250 DVRTLHQWVNGIRIAKYG  267 (281)
T ss_dssp             SHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHhhC
Confidence            999999999999988764

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=97.38  E-value=0.00071  Score=70.63  Aligned_cols=91  Identities=9%  Similarity=0.065  Sum_probs=62.9

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhccc----CcccccceeeEeeecc-CCCCCcEEEEEEeCCCCc--eeeEEEEec
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWS----TPAHVFPLVSTRLVSS-SRHSDVIVFSVRCGTPQG--VATHHLRAE  530 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~----~~~~~~~l~~~r~~~~-s~~~~~~~f~~~~~t~~g--~~~~~~~~e  530 (774)
                      .++|+++|++|+++.||+|...- +++...    .++..+.++...-.+. -.....+||+|++...+.  ...|||++|
T Consensus       145 ~K~WkkRyfvLr~sgLy~~~k~~-sk~~r~l~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~ik~~k~~~~~~~~~~lcae  223 (256)
T 3hk0_A          145 KKSWKKLYVCLRRSGLYCSTKGT-SAAPRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIKPNKVRNETKELRLLCAE  223 (256)
T ss_dssp             SSCEEEEEEEEETTEEEEESSTT-CCCGGGEEEEECCTTEEEEEESSTHHHHCCSSSEEEEEEETTCSSCCTTCEEEEES
T ss_pred             CCcceEEEEEEeCCEEEEEecCC-CCccccceEEEEcCCCEEEEecccccccCCCCCCEEEEEcccccCCCceEEEEEeC
Confidence            57899999999999999998665 444322    3566666664320000 011123999999764311  236999999


Q ss_pred             ChhHHHHHHHHHHHHHHHH
Q psy4897         531 THRDLANWARTLVQATHSC  549 (774)
Q Consensus       531 t~~dl~~w~~~l~~~~~~~  549 (774)
                      +..++..|..+|-.|-|-.
T Consensus       224 de~~~~~W~~aIr~ak~g~  242 (256)
T 3hk0_A          224 DEQTRTSWMTAFRLLKYGM  242 (256)
T ss_dssp             SHHHHHHHHHHHHHHHHTH
T ss_pred             CHHHHHHHHHHHHHHHhhH
Confidence            9999999999999887643

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=97.38  E-value=0.00036  Score=64.25  Aligned_cols=85  Identities=19%  Similarity=0.346  Sum_probs=57.6

Q ss_pred             ceEEEEEEeccceeEEecCCCCChhcccCccccccee---eEeeeccC-----CCCC-cEEEEEEeCCC--CceeeEEEE
Q psy4897         460 RWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLV---STRLVSSS-----RHSD-VIVFSVRCGTP--QGVATHHLR  528 (774)
Q Consensus       460 ~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~---~~r~~~~s-----~~~~-~~~f~~~~~t~--~g~~~~~~~  528 (774)
                      .|+++||+|++..|++|+..+..  .-..|.....|-   ..+-|.++     ...+ .+.|.|.+...  ..-+++||.
T Consensus        19 ~Wkkr~~vL~~~kL~~y~~~~~~--~~~~p~~~Idl~~~~~V~~V~~~d~i~~~~~~~p~iF~I~~~~~~~~~~~~l~l~   96 (117)
T 2rov_A           19 GWVKKYVIVSSKKILFYDSEQDK--EQSNPYMVLDIDKLFHVRPVTQTDVYRADAKEIPRIFQILYANEGISSAKNLLLL   96 (117)
T ss_dssp             CCCEEEEEEETTEEEEESCHHHH--HTTCCSEEECGGGEEEEEECCTTTCSSSCTTTGGGEEEEEECSSSSTTCEEEEEE
T ss_pred             CcEEEEEEEECCEEEEEECCCCc--ccCCceEEEECcccEEEEEcccccccccccccCCcEEEEEeCCCCCCCCcEEEEE
Confidence            79999999999999999985421  123555555542   12323221     1111 27899987421  123799999


Q ss_pred             ecChhHHHHHHHHHHHHH
Q psy4897         529 AETHRDLANWARTLVQAT  546 (774)
Q Consensus       529 ~et~~dl~~w~~~l~~~~  546 (774)
                      +++..|+..|..+|..++
T Consensus        97 A~s~~e~~~WV~aL~~~i  114 (117)
T 2rov_A           97 ANSTEEQQKWVSRLVKKI  114 (117)
T ss_dssp             CSSHHHHHHHHHHHHHHC
T ss_pred             eCCHHHHHHHHHHHHHHh
Confidence            999999999999998654

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=97.35  E-value=2.8e-05  Score=83.98  Aligned_cols=60  Identities=20%  Similarity=0.283  Sum_probs=0.0

Q ss_pred             CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEeccc
Q psy4897         199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREV  262 (774)
Q Consensus       199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~~  262 (774)
                      ..+++|..|.+++||+++| |++||+|++|||+++.+  .+++..+++. ++.++|+|.|.++.
T Consensus       253 ~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~-~~~v~l~v~R~g~~  312 (332)
T 3num_A          253 ISGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVVS--ANDVSDVIKR-ESTLNMVVRRGNED  312 (332)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             CCceEEEEeccCCChHHcC-CCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEEEEECCEE
Confidence            3578999999999999998 99999999999999976  6788888876 77899999987653

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.27  E-value=4e-05  Score=86.39  Aligned_cols=69  Identities=22%  Similarity=0.339  Sum_probs=0.0

Q ss_pred             ccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          34 LGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        34 LGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      +|+.+..- ....|++|..|.++|||+++| |++||+|++|||++|.++  .+...++++.+..+.|+|.|+.
T Consensus       372 ~G~~l~~~-~~~~gv~V~~V~~gspA~~aG-L~~GDiI~~vng~~v~~~--~~l~~~l~~~~~~v~l~v~R~g  440 (448)
T 1ky9_A          372 EGAEMSNK-GKDQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLALNIQRGD  440 (448)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             cceEeecc-CCCCeEEEEEecCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHcCCCeEEEEEEECC
Confidence            46665421 223579999999999999998 999999999999999965  5667777766568889998865

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*

Probab=97.20  E-value=0.00099  Score=64.53  Aligned_cols=87  Identities=15%  Similarity=0.264  Sum_probs=71.0

Q ss_pred             CCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeecc-CCCCCcEEEEEEeCCCCceeeEEEEecChhHH
Q psy4897         457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS-SRHSDVIVFSVRCGTPQGVATHHLRAETHRDL  535 (774)
Q Consensus       457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~-s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl  535 (774)
                      .-..|+++|+++||..|++|.+.-.   ++..|....+|-.+.|... +....+++|.+.-+...|...+|+|.|+..+.
T Consensus        62 tLKgyKryWFv~kd~~LsyYKskEe---~~geP~~~I~LrGCEVtpDVnva~~Kf~IkL~vP~~~gm~e~~Lrcd~E~qy  138 (173)
T 4f7h_A           62 TLKGYKQYWCTFKDTSISCYKSKEE---SSGTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVAEGMNEIWLRCDNEKQY  138 (173)
T ss_dssp             BCCCCEEEEEEEETTEEEEESCGGG---CSSCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEEEEEEEESSHHHH
T ss_pred             ccccceeEEEEEeCCEEEEEcCHhH---hcCCCceEEecCceEEeccccccccceeEEEeccCCCCcceeeeecCCHHHH
Confidence            4688999999999999999998764   3678988888887776653 44455677777667677999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy4897         536 ANWARTLVQAT  546 (774)
Q Consensus       536 ~~w~~~l~~~~  546 (774)
                      +.|..++.-|.
T Consensus       139 a~WMAAcrLAs  149 (173)
T 4f7h_A          139 AHWMAACRLAS  149 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhhhhc
Confidence            99999887765

>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}

Probab=97.15  E-value=0.0012  Score=63.32  Aligned_cols=87  Identities=10%  Similarity=0.182  Sum_probs=70.6

Q ss_pred             CCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeecc-CCCCCcEEEEEEeCCCCceeeEEEEecChhHH
Q psy4897         457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS-SRHSDVIVFSVRCGTPQGVATHHLRAETHRDL  535 (774)
Q Consensus       457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~-s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl  535 (774)
                      .-..|+++|++++|..|++|.+.-.   ++..|...++|-.+-|... +...+++.|.+.-++..|...+||+.||..+.
T Consensus        41 tLKgfKryWfv~kDt~LsyYKSkEe---~~geP~~~inLrGCEVtPDVnva~~Kf~ikL~ip~~~gm~e~~LrcdsE~QY  117 (165)
T 4bbk_A           41 MLKACKQYWFVFKDTSIAYFKNKEL---EQGEPIEKLNLRGCEIVPDVNVSGRKFGIKLLIPVADGMNEVYLRCDHEDQY  117 (165)
T ss_dssp             ---CCEEEEEEEETTEEEEESSGGG---TTSCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEEEEEEEESSHHHH
T ss_pred             ccccceeEEEEEeCCEEEEEcCHHH---hcCCCceEEecCccEEecccccccceeeEEEecCCCCcceeeeeecCCHHHH
Confidence            4588999999999999999998764   3678988888877776543 44556788888878888999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy4897         536 ANWARTLVQAT  546 (774)
Q Consensus       536 ~~w~~~l~~~~  546 (774)
                      +.|..++.-|.
T Consensus       118 a~WMAAcrLAs  128 (165)
T 4bbk_A          118 ARWMAACILAS  128 (165)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhhhcc
Confidence            99999887765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.00  E-value=0.0011  Score=81.59  Aligned_cols=70  Identities=14%  Similarity=0.205  Sum_probs=57.3

Q ss_pred             CCcccEEEEccCCCCCCeEEEEecCC--------CHHhhhC-CCCCCCEEEEECCEecCCCCHHHHHHHHHh-cCceEEE
Q psy4897          31 NNGLGISIKGGKENKMPILISKIFKG--------MAADQTE-QLYVGDAILSVNGEDLREATHDEAVKALKR-AGKVVEL  100 (774)
Q Consensus        31 ~~gLGfsI~GG~e~~~gi~Vs~V~pG--------SpAaraG-~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~-ag~~V~L  100 (774)
                      .+++|+.+.-   ...+++|..|.+|        |||+++| .|+ ||+|++|||+++.++.  +++.+++. .|+.|+|
T Consensus       736 ~~g~G~~~~~---~~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~v~l  809 (1045)
T 1k32_A          736 SGRIACDFKL---DGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGTSARI  809 (1045)
T ss_dssp             CCBCSEEEEE---ETTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTSEEEE
T ss_pred             cceecEEEEE---eCCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCCEEEE
Confidence            4589988863   2357999999998        9999996 399 9999999999999886  45666664 5889999


Q ss_pred             Eeeecc
Q psy4897         101 EVGVGY  106 (774)
Q Consensus       101 ~V~R~~  106 (774)
                      +|.|..
T Consensus       810 ~v~r~~  815 (1045)
T 1k32_A          810 RLSGKG  815 (1045)
T ss_dssp             EEECSS
T ss_pred             EEECCC
Confidence            999865

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=96.92  E-value=0.0013  Score=72.55  Aligned_cols=87  Identities=11%  Similarity=0.156  Sum_probs=57.4

Q ss_pred             CCceEEEEEEe--ccceeEEecCCCCChhcccCcccccceeeEeeecc-CCCCCcEEEEEEeCCCCceeeEEEEecChhH
Q psy4897         458 TDRWVSIFGAV--TERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS-SRHSDVIVFSVRCGTPQGVATHHLRAETHRD  534 (774)
Q Consensus       458 ~~~w~~~~~~l--~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~-s~~~~~~~f~~~~~t~~g~~~~~~~~et~~d  534 (774)
                      ...|+++|+||  ++..|+.|.+...     ..|....+|-...++.. ......++|.|......+-+++||.+++..|
T Consensus       159 ~k~WkrRwFVL~~~~~~L~Yy~~~~~-----~~p~g~I~L~~~~~~~~~~~~~~~~~f~I~~~~~~~~R~y~l~A~s~~e  233 (386)
T 3lju_X          159 NGQFLSRKFVLTEREGALKYFNRNDA-----KEPKAVMKIEHLNATFQPAKIGHPHGLQVTYLKDNSTRNIFIYHEDGKE  233 (386)
T ss_dssp             SCCEEEEEEEEETTTTEEEEEC----------CCSEEEEGGGEEEEECHHHHTSTTCEEEEEEETTEEEEEEEECSSHHH
T ss_pred             cCCceEEEEEEEcCCCEEEEECCCCc-----cCcccEEEeeccEEEEcccccCCCceEEEEEecCCCceEEEEEcCCHHH
Confidence            46799999999  9999999998753     45555555554332221 1123347777762111134899999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy4897         535 LANWARTLVQATHSC  549 (774)
Q Consensus       535 l~~w~~~l~~~~~~~  549 (774)
                      +..|.++|..+....
T Consensus       234 ~~~Wi~aIr~a~~~~  248 (386)
T 3lju_X          234 IVDWFNALRAARFHY  248 (386)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhccccc
Confidence            999999998886544

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.82  E-value=0.0088  Score=55.50  Aligned_cols=84  Identities=15%  Similarity=0.237  Sum_probs=54.8

Q ss_pred             CCceEEEEEEeccc------eeEEecCCCCChhcccCcccccceeeE-eeecc----CCCCCcEEEEEEeCCCCceeeEE
Q psy4897         458 TDRWVSIFGAVTER------ELRLYESAPWSPEAWSTPAHVFPLVST-RLVSS----SRHSDVIVFSVRCGTPQGVATHH  526 (774)
Q Consensus       458 ~~~w~~~~~~l~~~------~l~~y~~~p~~~~~~~~~~~~~~l~~~-r~~~~----s~~~~~~~f~~~~~t~~g~~~~~  526 (774)
                      .++|+++|++|...      -|-+|++.--. --...|..+-.|-++ +|...    +.+.+.++|.|.|..    ++|+
T Consensus        27 gkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~-~r~~~~rrVIrLsdCisV~~~~~e~~~pk~~~aF~l~T~e----r~~~  101 (127)
T 2d9w_A           27 GKKWRRFGASLYGGSDCALARLELQEGPEKP-RRCEAARKVIRLSDCLRVAEAGGEASSPRDTSAFFLETKE----RLYL  101 (127)
T ss_dssp             SCBCCEEEEEEECCSSSSCCEEEEECCCSCS-SSCSCCEEEECGGGEEEEEECCSCSSSCSSCEEEEEEESS----CEEE
T ss_pred             hhhhheeEEEEecCCCCCceeeeeeeccCcc-ccCCCCceEEEhhhCCeEecccCccCCCCcceEEEEEeCC----cEEE
Confidence            45688888888764      47778886421 111233344434332 33222    334667999999985    5999


Q ss_pred             EEecChhHHHHHHHHHHHHHH
Q psy4897         527 LRAETHRDLANWARTLVQATH  547 (774)
Q Consensus       527 ~~~et~~dl~~w~~~l~~~~~  547 (774)
                      |++|+. ++..|..+|.+-++
T Consensus       102 laAe~~-E~~~Wi~~ic~~aF  121 (127)
T 2d9w_A          102 LAAPAA-ERGDWVQAICLLAF  121 (127)
T ss_dssp             EEECHH-HHHHHHHHHHHHHT
T ss_pred             EEeCcH-HHHHHHHHHHHHhc
Confidence            999975 99999999977654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=96.29  E-value=0.0048  Score=75.78  Aligned_cols=70  Identities=14%  Similarity=0.194  Sum_probs=57.1

Q ss_pred             CCCcceEEeCCCCCCCCeEEEEecCC--------Chhhhcc-CCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEE
Q psy4897         185 NNGLGISIKGGKENKMPILISKIFKG--------MAADQTE-QLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVEL  254 (774)
Q Consensus       185 ~~~LGfsi~gg~~~~~pi~Is~V~pg--------spA~~aG-~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L  254 (774)
                      ..++|+.+...   ..+++|..|.++        +||+++| .|+ ||+|++|||+++.++.  +++.+|+. .|..|.|
T Consensus       736 ~~g~G~~~~~~---~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~v~l  809 (1045)
T 1k32_A          736 SGRIACDFKLD---GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGTSARI  809 (1045)
T ss_dssp             CCBCSEEEEEE---TTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTSEEEE
T ss_pred             cceecEEEEEe---CCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCCEEEE
Confidence            34778777542   346899999998        9999996 399 9999999999999864  77888886 7889999


Q ss_pred             EEEEec
Q psy4897         255 EVKYLR  260 (774)
Q Consensus       255 ~V~R~~  260 (774)
                      +|.|.+
T Consensus       810 ~v~r~~  815 (1045)
T 1k32_A          810 RLSGKG  815 (1045)
T ss_dssp             EEECSS
T ss_pred             EEECCC
Confidence            998864

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=95.99  E-value=0.0065  Score=69.77  Aligned_cols=63  Identities=17%  Similarity=0.185  Sum_probs=49.6

Q ss_pred             CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCC--------HHHHHHHHHH--cCcceEEEEEEecccc
Q psy4897         199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT--------HDEAVKALKR--AGKLVELEVKYLREVT  263 (774)
Q Consensus       199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t--------~~e~v~~Lk~--~g~~V~L~V~R~~~~~  263 (774)
                      ..|++|..|.+++||++ + |++||+|++|||+.|.+..        ..++..++..  .|+.|.|+|.|.++..
T Consensus       276 ~~Gv~V~~V~~~spA~~-a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~~  348 (539)
T 4fln_A          276 NEGVLVRRVEPTSDASK-V-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHK  348 (539)
T ss_dssp             SBCEEEEEECTTSGGGG-T-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred             cCceeeecccCCChHHh-C-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEEE
Confidence            46899999999999986 4 9999999999999996531        1123445544  7899999999987643

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=95.10  E-value=0.025  Score=57.58  Aligned_cols=53  Identities=13%  Similarity=0.204  Sum_probs=39.6

Q ss_pred             CcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhh
Q psy4897         302 RYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHV  359 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~  359 (774)
                      +.+++.-|....   ....+.++|+|..+  .++.+|+|++.+++.+|++||..++..
T Consensus       104 g~I~L~~~~~v~---~~~~k~~~F~I~t~--~r~~~l~A~s~~e~~~Wv~aL~~~i~~  156 (228)
T 3tfm_A          104 GTVEVRSAKEII---DNTNKENGIDIIMA--DRTFHLIAESPEDASQWFSVLSQVHSS  156 (228)
T ss_dssp             EEEEGGGCSEEE---EETTTTSEEEEECS--SCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             EEEEcCCCEEec---cCCCCCcEEEEEcC--CcEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            345554444332   12347789999874  468999999999999999999999974

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=94.88  E-value=0.041  Score=50.82  Aligned_cols=59  Identities=19%  Similarity=0.368  Sum_probs=45.0

Q ss_pred             cCcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhh
Q psy4897         301 TRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLT  361 (774)
Q Consensus       301 ~~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~  361 (774)
                      .+.|++.-|.+... .....+.++|+|..++++ .++++|++.+++.+|++||..+|..+.
T Consensus        69 ~g~I~L~~~~v~~~-~~~~kr~~~F~l~t~~~~-~yl~qA~s~~e~~~Wi~aI~~~i~~~~  127 (129)
T 2p0d_A           69 ESSVDLRGAALAHG-RHLSSRRNVLHIRTIPGH-EFLLQSDHETELRAWHRALRTVIERLV  127 (129)
T ss_dssp             SEEEECTTCEEEEC-TTSCSSSSEEEEECTTSC-EEEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccEEEeCCcEEEEC-CCCCCCCcEEEEEcCCCC-EEEEECCCHHHHHHHHHHHHHHHHhcc
Confidence            34566666665541 222347789999988776 688999999999999999999998653

>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}

Probab=94.33  E-value=0.44  Score=48.29  Aligned_cols=129  Identities=13%  Similarity=0.204  Sum_probs=78.9

Q ss_pred             CCCceEEEEEEecc----c---eeEEecCCCCChhccc--CcccccceeeE-eeeccCCCCCc-EEEEEEeCCCCceeeE
Q psy4897         457 STDRWVSIFGAVTE----R---ELRLYESAPWSPEAWS--TPAHVFPLVST-RLVSSSRHSDV-IVFSVRCGTPQGVATH  525 (774)
Q Consensus       457 ~~~~w~~~~~~l~~----~---~l~~y~~~p~~~~~~~--~~~~~~~l~~~-r~~~~s~~~~~-~~f~~~~~t~~g~~~~  525 (774)
                      ..++|+++|+||+-    .   .|.+|..-.   +-|.  .+-.+.+|-.. .|-......++ ++++|-|.+    .+.
T Consensus        19 ~~KkWk~rw~vlrk~s~~adcl~L~vYkd~~---dr~k~~~~KaslsL~~~~GlE~g~~ldk~s~TlAIIc~d----~~~   91 (224)
T 3ml4_A           19 DGKKWKSRWLVLRKPSPVADCLLMLVYKDKC---ERSKGLRERSSLTLEDICGLEPALPYEGLAHTLAIICLS----QAV   91 (224)
T ss_dssp             ---CCEEEEEEEECSSTTSSCEEEEEESSSH---HHHSCCCCSEEEEECCEEEEEEEEEETTEEEEEEEEESS----CEE
T ss_pred             cCCceeeEEEEEEcCCCchheEEEEEEcChh---hhhcCCcccceeehHHhcCccccccccCcccEEEEEecC----cEE
Confidence            46799999999985    2   577785433   3333  22233333331 22222223333 899999886    477


Q ss_pred             EEEecChhHHHHHHHHHHHHHHHHHHhccce-EEEEEe------cCeeeEEEEEecCceEEeecccCCCCCCCceeeccc
Q psy4897         526 HLRAETHRDLANWARTLVQATHSCVLNQRQV-SVRCMY------RGQPSQLIVNYDFGFRLLEATAGSMGREPKILWTYP  598 (774)
Q Consensus       526 ~~~~et~~dl~~w~~~l~~~~~~~~~~~~~~-~~~c~~------~~~~~~l~~~~~~gf~l~~~~~~~~~~~~~~l~~~~  598 (774)
                      .|+.|+...|..|...|..       ...|. .|.+..      ..-+|.|.|+. ..|.|.+.      ..+.+|...|
T Consensus        92 vLAFds~e~l~~W~~~l~~-------slGe~~rF~V~v~Ps~kL~sG~a~Lhl~~-~~l~L~~~------~~~~~l~~W~  157 (224)
T 3ml4_A           92 MLGFDSHEAMCAWDTRIRY-------ALGEVHRFHVTVAPGTKLESGPATLHLCN-DILVLARD------IPPTVMGQWK  157 (224)
T ss_dssp             EEECSSHHHHHHHHHHHHH-------HTSSEEEEEEEECSSSSSCCEEEEEEEET-TEEEEEET------TTTEEEEEEE
T ss_pred             EEEeCCHHHHHHHHHHHhh-------ccCCCceEEEEecCccccCCCcEEEEecC-CcEEEccC------CCccEEEEcc
Confidence            9999999999999997754       33333 455432      33355555544 45666644      4577899999


Q ss_pred             cccccccc
Q psy4897         599 FERLRMSS  606 (774)
Q Consensus       599 f~~l~~ss  606 (774)
                      ..-||-=.
T Consensus       158 L~~LRRYG  165 (224)
T 3ml4_A          158 LSDLRRYG  165 (224)
T ss_dssp             GGGEEEEE
T ss_pred             hHHhhhhc
Confidence            99998654

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=94.10  E-value=0.063  Score=49.99  Aligned_cols=60  Identities=12%  Similarity=0.159  Sum_probs=46.4

Q ss_pred             cCcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhhH
Q psy4897         301 TRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTL  362 (774)
Q Consensus       301 ~~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~  362 (774)
                      .+.+|+.-+.+.  .....++.++|+|..++......++|.+.+++.+|++||+.++...-+
T Consensus        57 ~~~i~L~g~~V~--~~e~~~~~~~F~L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~~~~~  116 (126)
T 2dtc_A           57 GKKVSIVGWMVQ--LPDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSSRP  116 (126)
T ss_dssp             SEEEECTTCEEE--CCCCTTSTTEEEEECTTSCSEEEEECSSHHHHHHHHHHHHHHHTSCCC
T ss_pred             CceEEeCCCEEE--ecCCCCCCCEEEEeeCCCCCEEEEeCCCHHHHHHHHHHHHHHHhcCCC
Confidence            456777766664  233334889999998855567999999999999999999999985443

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=93.94  E-value=0.066  Score=49.06  Aligned_cols=61  Identities=11%  Similarity=0.162  Sum_probs=44.7

Q ss_pred             cCcccceeeEeeecccccCCCCceEEEecCCC-ceeEEEeeCChHhHHHHHHHHHHHhhhhh
Q psy4897         301 TRYLPLQLCYLVRNYKHYDSENRTLELHSPDG-VHSCILRASDASEASLWFNTLHSTLHVLT  361 (774)
Q Consensus       301 ~~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg-~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~  361 (774)
                      .+.|++.-|.+..-......+.++|.|..++. .+.+++.|++.+++.+|++||..++....
T Consensus        61 ~G~I~L~~~~v~~~~~~~~~k~~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~~~~  122 (124)
T 2w2x_D           61 RGILDLNTYNVVKAPQGKNQKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITWKID  122 (124)
T ss_dssp             SEEEEGGGEEEEECTTCBTTBSEEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC---
T ss_pred             ccEEECCCCEEEEccCCcCCCCEEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHHhhc
Confidence            46677777776653222345778999987765 56789999999999999999998886543

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=93.69  E-value=0.1  Score=47.33  Aligned_cols=40  Identities=23%  Similarity=0.431  Sum_probs=34.8

Q ss_pred             CCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhh
Q psy4897         320 SENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVL  360 (774)
Q Consensus       320 ~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l  360 (774)
                      ++.++|.|...+++ .++++|++.+++.+|++||..+|..+
T Consensus        82 kr~~~F~l~t~~~~-~~lfqA~s~~e~~~Wi~ai~~~i~~~  121 (122)
T 1dro_A           82 KKKHVLRVKLANGA-LFLLQAHDDTEMSQWVTSLKAQSDST  121 (122)
T ss_dssp             SSTTEEEEECSSSC-EEEEECSSSHHHHHHHHHHHHHHTCC
T ss_pred             CCCeEEEEEEcCCC-EEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            47899999976665 78899999999999999999998753

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=93.49  E-value=0.12  Score=47.37  Aligned_cols=56  Identities=21%  Similarity=0.305  Sum_probs=41.4

Q ss_pred             CcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         302 RYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      ..+++.-|.+........++.+.|.|..+++. .+++++++.+++.+|++||..+|.
T Consensus        68 ~~i~L~~a~v~~~~~d~~krk~vF~l~t~~~~-~ylfqA~s~~e~~~Wi~aI~~aI~  123 (124)
T 3pp2_A           68 YTVELRGATLSWAPKDKSSRKNVLELRSRDGS-EYLIQHDSEAIISTWHKAIAQGIQ  123 (124)
T ss_dssp             EEEECTTCEEEECCGGGCSSSSEEEEECTTSC-EEEEECSCHHHHHHHHHHHHHHHC
T ss_pred             ceEEcCCCEEEecccccCCCceEEEEECCCCC-EEEEECCCHHHHHHHHHHHHHHHh
Confidence            34455545444311123457889999988876 689999999999999999999885

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=93.18  E-value=0.12  Score=56.99  Aligned_cols=58  Identities=16%  Similarity=0.343  Sum_probs=45.9

Q ss_pred             CcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhh
Q psy4897         302 RYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLT  361 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~  361 (774)
                      ..+++..|.+..  .....|++||+|..+++.++++|++++.+++..|++||..++..+.
T Consensus       344 ~~~~l~~~~v~~--~~~~~r~~cF~i~~~~~~~~~~l~A~s~~e~~~Wi~ai~~a~~~~~  401 (407)
T 4h8s_A          344 LIQDLDNCSVMA--VDCEDRRYCFQITTPNGKSGIILQAESRKENEEWICAINNISRQIY  401 (407)
T ss_dssp             CCBCSSCCEEEE--ECCTTCSSEEEEECTTSSCCEEEECSSSHHHHHHHHHHHHHHSCC-
T ss_pred             eEEECCceEEEE--CCCCCCCceEEEEecCCCceEEEEcCCHHHHHHHHHHHHHHHHHhh
Confidence            345667776532  2334478899999999988999999999999999999999887553

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=92.88  E-value=0.15  Score=45.18  Aligned_cols=57  Identities=11%  Similarity=0.281  Sum_probs=40.8

Q ss_pred             CcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhh
Q psy4897         302 RYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHV  359 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~  359 (774)
                      +.+++.-+.+.........++++|.|...++ ++.+++|++.+++.+|++||..++..
T Consensus        46 g~i~L~~~~~~~~~~~~~~~~~~F~i~~~~~-r~~~l~a~s~~e~~~Wi~ai~~~~~~  102 (113)
T 1pls_A           46 GMIPLKGSTLTSPCQDFGKRMFVFKITTTKQ-QDHFFQAAFLEERDAWVRDINKAIKC  102 (113)
T ss_dssp             EEEESSSCCEESSCCSSCCSSSEEEEEETTT-EEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             eEEEcCCCEEEEecCCCCCCccEEEEEcCCC-CEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            3445544444332222344778999988764 58999999999999999999988763

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=92.83  E-value=0.2  Score=46.75  Aligned_cols=62  Identities=23%  Similarity=0.298  Sum_probs=45.3

Q ss_pred             cccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhhHHHHHH
Q psy4897         303 YLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAE  367 (774)
Q Consensus       303 ~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~~~~~~  367 (774)
                      .|++.-|.+..  .....+.++|.|..++. +.++|+|++.+++.+|++||..+|.....+.+.+
T Consensus        72 ~I~L~~~~~~~--~~~~~~~~~F~i~~~~~-r~~~l~A~s~~e~~~Wi~al~~ai~~~~~~~~~~  133 (150)
T 1wg7_A           72 SIFLDSCMGVV--QNNKVRRFAFELKMQDK-SSYLLAADSEVEMEEWITILNKILQLNFEAAMQE  133 (150)
T ss_dssp             EECTTTCCEEC--CCCSSCTTEEEEECSSS-CEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecccCEEEe--cCCCCCceEEEEEeCCC-cEEEEEeCCHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            44444444443  12245788999999874 5899999999999999999999998655554443

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*

Probab=92.82  E-value=0.16  Score=46.24  Aligned_cols=81  Identities=11%  Similarity=0.056  Sum_probs=54.3

Q ss_pred             EEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCC-cEEEEEEeCCCCceeeEEEEecChhHHHHHHHHH
Q psy4897         464 IFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSD-VIVFSVRCGTPQGVATHHLRAETHRDLANWARTL  542 (774)
Q Consensus       464 ~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~-~~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l  542 (774)
                      .|+.+.|  .++|.++-.++....+-...|||....++.-..... +++|.|+++.    ++|.|++||..|...|..+|
T Consensus        29 ~~FLfND--~Ll~a~~~~~~~~~~~~~~~~~L~~~~v~d~~d~~~~~n~f~i~~~~----~s~~~~aes~~eK~~Wl~~~  102 (113)
T 1zc3_B           29 HGFLMND--CLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDNPPMKDMFKLLMFP----ESRIFQAENAKIKREWLEVL  102 (113)
T ss_dssp             EEEEESS--EEEEEEEECCTTSCEEEEEEEETTTCEEEEECCBTTBSSEEEEEETT----EEEEEECSSHHHHHHHHHHH
T ss_pred             EEEecCC--EEEEEEEeccCcccEEEEEEEEcccCEEEECCCCcccceEEEEEeCC----ceEEEEcCCHHHHHHHHHHH
Confidence            3555554  777777644433323444456666555554222222 4999999763    68999999999999999999


Q ss_pred             HHHHHHHH
Q psy4897         543 VQATHSCV  550 (774)
Q Consensus       543 ~~~~~~~~  550 (774)
                      -+|.....
T Consensus       103 ~~a~~~~~  110 (113)
T 1zc3_B          103 EETKRALS  110 (113)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99986544

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=92.67  E-value=0.2  Score=44.22  Aligned_cols=57  Identities=19%  Similarity=0.258  Sum_probs=42.1

Q ss_pred             CcccceeeEeeecccc-cCCCCceEEEecCC------CceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         302 RYLPLQLCYLVRNYKH-YDSENRTLELHSPD------GVHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~-~d~r~r~FeL~s~d------g~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      +.+++.-|.+...... .+.+.++|+|..++      ..+.++|+|++.+++.+|++||..++.
T Consensus        49 g~i~L~~~~v~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~  112 (118)
T 1v89_A           49 GCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAG  112 (118)
T ss_dssp             EEECSTTEEEEEECCCSSCCCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCEEEEcCcCcccCCcceEEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHc
Confidence            4556655554432221 23467899998864      567899999999999999999999886

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=92.63  E-value=0.16  Score=45.89  Aligned_cols=41  Identities=20%  Similarity=0.406  Sum_probs=35.5

Q ss_pred             CCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhh
Q psy4897         319 DSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVL  360 (774)
Q Consensus       319 d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l  360 (774)
                      ..+.++|.|..++++ .++++|++.+++.+|++||..++...
T Consensus        79 ~~r~~~F~i~~~~~~-~~~f~A~s~~e~~~Wi~ai~~~~~~~  119 (123)
T 1wjm_A           79 RKRKHVFKLGLQDGK-EYLFQAKDEAEMSSWLRVVNAAIASG  119 (123)
T ss_dssp             SSCSSEEEEECSSSC-EEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCEEEEEEcCCc-EEEEECCCHHHHHHHHHHHHHHHhcc
Confidence            457899999987765 78999999999999999999988744

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=92.53  E-value=0.14  Score=45.89  Aligned_cols=41  Identities=15%  Similarity=0.205  Sum_probs=35.4

Q ss_pred             CCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhh
Q psy4897         319 DSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVL  360 (774)
Q Consensus       319 d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l  360 (774)
                      ..+.++|+|...++. ..+++|++.+++.+|++||..++...
T Consensus        63 ~~r~~~F~l~~~~~~-~y~f~A~s~ee~~~Wi~ai~~~~~~~  103 (112)
T 3cxb_B           63 TDRPHAFQVILSDRP-CLELSAESEAEMAEWMQHLCQAVSKG  103 (112)
T ss_dssp             SSCTTEEEEEETTSC-CEEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCeEEEEEcCCCC-EEEEEcCCHHHHHHHHHHHHHHhhcc
Confidence            347889999977765 78999999999999999999988753

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=92.34  E-value=0.16  Score=46.32  Aligned_cols=41  Identities=20%  Similarity=0.344  Sum_probs=35.1

Q ss_pred             CCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhh
Q psy4897         319 DSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVL  360 (774)
Q Consensus       319 d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l  360 (774)
                      +.+.++|.|..+++ ++.+|+|++.+++.+|++||..+|...
T Consensus        86 ~~~~~~F~I~t~~~-r~~~l~A~s~~e~~~Wi~ai~~~i~~~  126 (128)
T 2rlo_A           86 EEENFEFLIVSSTG-QTWHFEAASFEERDAWVQAIESQILAS  126 (128)
T ss_dssp             CCCCCCEEEECTTS-CEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCceEEEEcCCC-CEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence            35778999998865 479999999999999999999988753

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=92.12  E-value=0.22  Score=44.75  Aligned_cols=55  Identities=15%  Similarity=0.263  Sum_probs=41.2

Q ss_pred             CcccceeeEeeecccccCCCCceEEEecCCCc--------------------eeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         302 RYLPLQLCYLVRNYKHYDSENRTLELHSPDGV--------------------HSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~--------------------~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      +.+++.-|.+..  .....+.++|+|..+++.                    +..+|+|++.+++.+|++||..+|.
T Consensus        46 g~i~L~~~~v~~--~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~  120 (127)
T 1fgy_A           46 GIIPLENLSIRE--VLDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS  120 (127)
T ss_dssp             EEEECTTCEEEE--ECCSSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             eEEECCceEEEE--ccCCCCCceEEEecCCccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhc
Confidence            345555554332  123357889999988753                    6889999999999999999998886

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.93  E-value=0.25  Score=43.59  Aligned_cols=41  Identities=24%  Similarity=0.404  Sum_probs=34.4

Q ss_pred             cCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhh
Q psy4897         318 YDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVL  360 (774)
Q Consensus       318 ~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l  360 (774)
                      .+.+.++|.|..+  .++.+|+|++.+++.+|++||..++...
T Consensus        65 ~~~~~~~F~i~~~--~r~~~l~a~s~~e~~~Wi~ai~~~~~~~  105 (115)
T 2dn6_A           65 KDGKKCLFLVKCF--DKTFEISASDKKKKQEWIQAIHSTIHLL  105 (115)
T ss_dssp             CTTCCSEEEEECS--SCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeeEEEEEeC--CCEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence            3457789999876  4579999999999999999999988743

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=91.92  E-value=0.36  Score=44.63  Aligned_cols=78  Identities=15%  Similarity=0.168  Sum_probs=49.9

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccC---C--CCCc--EEEEEEeCCCCceeeEEEEec
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSS---R--HSDV--IVFSVRCGTPQGVATHHLRAE  530 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s---~--~~~~--~~f~~~~~t~~g~~~~~~~~e  530 (774)
                      ...||++|..|..+++-+|.+-     .-.++...-||-+..-|...   .  ..+.  |||.++|.+    .++| --|
T Consensus        21 d~~rKRHYWrLD~K~Itlf~~e-----~~~~~ykeIpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T~~----~~yy-Vg~   90 (125)
T 2coa_A           21 DTLRKRHYWRLDCKCITLFQNN-----TTNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTAN----ATYF-VGE   90 (125)
T ss_dssp             SCCCEEEEEEECSSEEEEESSS-----SCSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSS----CCCC-EEC
T ss_pred             CccccceeeEecCCeEEEEecC-----CCCceeeeeehhHeecccccccccccCCCCCCceEEEEeCC----eEEE-Ecc
Confidence            4578999999999999999983     35666666666554333321   1  1222  999999974    2343 334


Q ss_pred             C----h--------hHHHHHHHHHHHH
Q psy4897         531 T----H--------RDLANWARTLVQA  545 (774)
Q Consensus       531 t----~--------~dl~~w~~~l~~~  545 (774)
                      .    .        ..+..|+.+|.||
T Consensus        91 ~~~~~p~~~sg~g~~~a~~W~~aIrqA  117 (125)
T 2coa_A           91 MPGGTPGGPSGQGAEAARGWETAIRQA  117 (125)
T ss_dssp             CSCCCSSSCCCCCSHHHHHHHHHHHHH
T ss_pred             CCCCCCCCcCccccHHHHHHHHHHHhh
Confidence            2    1        2256677776665

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=91.86  E-value=0.33  Score=42.28  Aligned_cols=37  Identities=22%  Similarity=0.438  Sum_probs=32.5

Q ss_pred             CCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         321 ENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       321 r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      +.++|.|..++++ .++|+|++.+++.+|++||..+++
T Consensus        73 ~~~~F~i~~~~~~-~~~l~a~s~~e~~~Wi~ai~~~~k  109 (109)
T 2i5f_A           73 EENLFEIITADEV-HYFLQAATPKERTEWIKAIQMASR  109 (109)
T ss_dssp             CCSEEEEECTTCC-EEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             CceEEEEEeCCCC-EEEEEcCCHHHHHHHHHHHHHHhC
Confidence            6789999988654 699999999999999999998763

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.80  E-value=0.61  Score=43.34  Aligned_cols=79  Identities=18%  Similarity=0.196  Sum_probs=51.7

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccC---C--CCCc--EEEEEEeCCCCceeeEEEEec
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSS---R--HSDV--IVFSVRCGTPQGVATHHLRAE  530 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s---~--~~~~--~~f~~~~~t~~g~~~~~~~~e  530 (774)
                      ...|+++|..|..+++-+|.+     +.-.++...-||-+..-|...   .  ..+.  |||.++|.+     .-||--|
T Consensus        21 d~~rKRHYWrLD~K~Itlf~~-----e~~~k~ykeIpLseIL~v~~~~~~~~~~~~~~phcFEi~T~~-----~~y~Vge   90 (129)
T 2d9z_A           21 DNLRKRHYWRLDSKCLTLFQN-----ESGSKYYKEIPLSEILRISSPRDFTNISQGSNPHCFEIITDT-----MVYFVGE   90 (129)
T ss_dssp             CCCCEEEEEEEESSCEEEESC-----SSCCSCCCEECTTTCCEECCTTCCCCSSSCSCCCSEEEECSS-----CEEEECB
T ss_pred             CccccceeeEecCCeEEEEec-----CCCCceeceeeHHHhcccccccCccccCCCCCCceEEEEECC-----EEEEEcc
Confidence            356899999999999999998     345666666666655433321   1  1222  999999873     3455555


Q ss_pred             C----------------hhHHHHHHHHHHHHH
Q psy4897         531 T----------------HRDLANWARTLVQAT  546 (774)
Q Consensus       531 t----------------~~dl~~w~~~l~~~~  546 (774)
                      .                ......|+.+|.||.
T Consensus        91 ~~~~~~~~~~~~~sg~g~~~a~~We~aIrqAL  122 (129)
T 2d9z_A           91 NNGDSSHNPVLAATGVGLDVAQSWEKAIRQAL  122 (129)
T ss_dssp             CCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCccccccccchHHHHHHHHHHHHhc
Confidence            2                244455777776664

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=91.77  E-value=0.2  Score=46.50  Aligned_cols=56  Identities=20%  Similarity=0.378  Sum_probs=40.5

Q ss_pred             cCcccceeeEeeecccccCCCCceEEEecCCC----------------------ceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         301 TRYLPLQLCYLVRNYKHYDSENRTLELHSPDG----------------------VHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       301 ~~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg----------------------~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      .+.+++.-|.+...  ....+.++|+|..++.                      .+..+++|++.+++.+|++||..++.
T Consensus        47 ~G~I~L~~~~v~~~--~~~~~~~~F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~  124 (130)
T 1v88_A           47 VGTVLLNACEIIER--PSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALK  124 (130)
T ss_dssp             CEEEECSSCEECCC--CTTTSSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred             eEEEEcCCCEEEEC--CCCCCCeEEEEEcCCccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence            45667766665331  2233568999986543                      23478999999999999999998886

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=91.55  E-value=0.4  Score=43.42  Aligned_cols=58  Identities=26%  Similarity=0.305  Sum_probs=43.6

Q ss_pred             CcCcccceeeEeeecccccCC-CCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhh
Q psy4897         300 DTRYLPLQLCYLVRNYKHYDS-ENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHV  359 (774)
Q Consensus       300 ~~~~ipl~~~~l~R~~~~~d~-r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~  359 (774)
                      ..+.|||.-|.+..-.+..+. +.++|.|..  ..++.+++|++.+++.+|++||..++..
T Consensus        49 p~g~I~L~g~~V~~~~~~~~~~~~~~Fki~~--~~~~y~f~A~s~e~~~~Wl~al~~A~~~  107 (112)
T 2coc_A           49 LPRTIPLPSCKLSVPDPEERLDSGHVWKLQW--AKQSWYLSASSAELQQQWLETLSTAAHS  107 (112)
T ss_dssp             SCSEECGGGCEEECCCSSSCCSSSEEEEEEE--TTEEEEEEESSHHHHHHHHHHHHHHHSC
T ss_pred             cceEEEcCCCEEEecCcccccCCCCEEEEec--CCeEEEEEcCCHHHHHHHHHHHHHHhcC
Confidence            456788877777642222222 678999994  3468999999999999999999988764

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=91.27  E-value=0.21  Score=43.29  Aligned_cols=40  Identities=25%  Similarity=0.380  Sum_probs=34.6

Q ss_pred             CCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhh
Q psy4897         320 SENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVL  360 (774)
Q Consensus       320 ~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l  360 (774)
                      .++++|.|..+++ +..+++|++.+++.+|++||..+|..+
T Consensus        68 ~~~~~F~i~~~~~-r~~~l~a~s~~e~~~Wi~ai~~~i~~l  107 (108)
T 1u5d_A           68 KKESCFELTSQDR-RTYEFTATSPAEARDWVDQISFLLKDL  107 (108)
T ss_dssp             GGGGEEEEECSSS-CCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEcCCC-cEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            3678999998764 478999999999999999999998765

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=91.25  E-value=0.27  Score=42.61  Aligned_cols=37  Identities=22%  Similarity=0.505  Sum_probs=31.5

Q ss_pred             CCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHH
Q psy4897         319 DSENRTLELHSPDGVHSCILRASDASEASLWFNTLHST  356 (774)
Q Consensus       319 d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~n  356 (774)
                      ..+.++|.|...+++ +.+++|++.+++.+|++||..+
T Consensus        70 ~~~~~~F~i~~~~~~-~~~~~A~s~~e~~~Wi~ai~~A  106 (106)
T 1btn_A           70 KKKKHVFKLRLSDGN-EYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             CSSSSEEEEECTTSC-EEEEECSSHHHHHHHHHHHHHC
T ss_pred             cCCccEEEEEecCCC-EEEEECCCHHHHHHHHHHHhcC
Confidence            347789999976654 7999999999999999999864

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=91.20  E-value=0.24  Score=44.65  Aligned_cols=63  Identities=14%  Similarity=0.173  Sum_probs=44.6

Q ss_pred             CcccceeeEeeec--ccccCCCCceEEEecCC--CceeEEEeeCChHhHHHHHHHHHHHhhhhhHHH
Q psy4897         302 RYLPLQLCYLVRN--YKHYDSENRTLELHSPD--GVHSCILRASDASEASLWFNTLHSTLHVLTLKS  364 (774)
Q Consensus       302 ~~ipl~~~~l~R~--~~~~d~r~r~FeL~s~d--g~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~~~  364 (774)
                      +.+|+.-+.+...  ......++++|.|..++  ..++.+++|++.+++.+|++||..++..+..+.
T Consensus        50 g~i~L~~~~~~~~~~~~~~~~~~~~F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~~~  116 (125)
T 1unq_A           50 REAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKKQE  116 (125)
T ss_dssp             HTSCSEEEECTTCEEEEECSSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeEccceeEEeeeecccccCCCCEEEEEecCCCCceeEEEEeCCHHHHHHHHHHHHHHHhhcccch
Confidence            3455555443321  11234578899998653  346889999999999999999999998766653

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=90.81  E-value=0.3  Score=44.22  Aligned_cols=39  Identities=18%  Similarity=0.332  Sum_probs=33.9

Q ss_pred             CCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhh
Q psy4897         321 ENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVL  360 (774)
Q Consensus       321 r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l  360 (774)
                      +.++|+|..++. +.++|+|++.+++.+|++||..++..+
T Consensus        84 ~~~~F~i~~~~~-~~~~l~a~s~~e~~~Wi~al~~~~~~~  122 (129)
T 1x05_A           84 EENLFEIITADE-VHYFLQAATPKERTEWIKAIQMASRTG  122 (129)
T ss_dssp             SCSEEEEECTTC-CCCEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred             CCeEEEEEcCCC-CEEEEECCCHHHHHHHHHHHHHHHHcc
Confidence            678999998764 368999999999999999999988744

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=90.39  E-value=0.26  Score=42.71  Aligned_cols=56  Identities=25%  Similarity=0.433  Sum_probs=42.8

Q ss_pred             cCcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhh
Q psy4897         301 TRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLT  361 (774)
Q Consensus       301 ~~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~  361 (774)
                      .+.+++..|.+..    ...++++|.|..+ +.++.+|+|++.+++.+|++||..++..+.
T Consensus        41 ~g~i~L~~~~v~~----~~~~~~~F~i~~~-~~r~~~l~a~s~~e~~~Wi~al~~a~~~~~   96 (103)
T 3rcp_A           41 KGSIKMAVCEIKV----HSADNTRMELIIP-GEQHFYMKAVNAAERQRWLVALGSSKASLT   96 (103)
T ss_dssp             SCEEEGGGCEEEC----CTTCSSEEEEEET-TTEEEEEECSSHHHHHHHHHHHHTTSCCCC
T ss_pred             ccEEEeeeeEEEE----cCCCCceEEEEeC-CCCEEEEECCCHHHHHHHHHHHHHHHHhcc
Confidence            4566776666554    1335789999875 345899999999999999999999887543

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=90.39  E-value=0.39  Score=42.16  Aligned_cols=55  Identities=16%  Similarity=0.239  Sum_probs=39.9

Q ss_pred             CcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         302 RYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      +.+++.-+.+.... ..+.++++|.|...+ .++.+++|++.+++.+|++||..++.
T Consensus        49 ~~i~L~~~~~~~~~-~~~~~~~~F~i~~~~-~~~~~~~a~s~~e~~~Wi~al~~a~~  103 (109)
T 1wgq_A           49 ESQPLLGFTVTLVK-DENSESKVFQLLHKG-MVFYVFKADDAHSTQRWIDAFQEGTV  103 (109)
T ss_dssp             EEEECSSEEEEECC-CSSCSSSEEEEEETT-EEEEEEECSSHHHHHHHHHHHHHHHS
T ss_pred             ceEECCCCEEEECC-CCCCCCcEEEEEeCC-CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence            45566555554421 223467899998643 45799999999999999999998865

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.18  E-value=0.45  Score=41.99  Aligned_cols=56  Identities=13%  Similarity=0.189  Sum_probs=39.5

Q ss_pred             CcccceeeEeeeccc-ccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         302 RYLPLQLCYLVRNYK-HYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~-~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      +.+++.-+.+..-.. ....++++|.|...+. +.++|+|++.+++.+|++||..++.
T Consensus        53 g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~-r~~~l~a~s~~e~~~Wi~al~~~~~  109 (117)
T 2d9y_A           53 GSIPLLSFRVAAVQPSDNISRKHTFKAEHAGV-RTYFFSAESPEEQEAWIQAMGEAAR  109 (117)
T ss_dssp             EEEECSSCEEEECCTTTTCCCSSEEEEECSSS-CEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred             CEEEeCCeEEEEcCccccCCCccEEEEEcCCC-cEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            445555554432211 2234778999975543 5799999999999999999998875

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=90.16  E-value=0.47  Score=42.65  Aligned_cols=56  Identities=9%  Similarity=0.126  Sum_probs=39.3

Q ss_pred             CcccceeeEeeecccc-cCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         302 RYLPLQLCYLVRNYKH-YDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~-~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      +.+++..|.+...... ...+.++|.|..++. +.++|+|++.+++.+|++||..++.
T Consensus        63 g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~-r~~~l~a~s~~e~~~Wi~al~~a~~  119 (128)
T 2dkp_A           63 GSILLPSFQIALLTSEDHINRKYAFKAAHPNM-RTYYFCTDTGKEMELWMKAMLDAAL  119 (128)
T ss_dssp             EEECGGGSEEEECCGGGCCSSCSEEEEECSSS-CCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred             eEEEcCceEEEEcCCcccCCCCeEEEEEcCCC-CEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            3455544544332111 224678999988764 4799999999999999999987764

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=89.97  E-value=0.26  Score=53.79  Aligned_cols=58  Identities=19%  Similarity=0.367  Sum_probs=45.0

Q ss_pred             cccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhhH
Q psy4897         303 YLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTL  362 (774)
Q Consensus       303 ~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~  362 (774)
                      .+++..|.+..  .....+++||+|..+++.++.+++|++.+++.+|++||..++..+..
T Consensus       322 ~i~l~~~~v~~--~~~~~r~~~F~i~t~~~~~~~~l~A~s~~e~~~Wi~ai~~~~~~~~~  379 (385)
T 2q13_A          322 AMDIDNCSVMA--VDCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNISKQIYL  379 (385)
T ss_dssp             EEECTTCEEEE--ECCTTCSSEEEEECTTSCBCCCEECSSHHHHHHHHHHHHHHHTTCC-
T ss_pred             eEEccceEEEe--ccccCCCceEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHHHhhcc
Confidence            45555665432  22345778999999998788999999999999999999999886654

>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=89.68  E-value=0.92  Score=42.32  Aligned_cols=84  Identities=14%  Similarity=0.156  Sum_probs=54.1

Q ss_pred             CCCCceEEEEEEeccc-----eeEEecCCCCChhcccCccccccee---eEeeeccCCCCCc-EEEEEEeCCCCceeeEE
Q psy4897         456 DSTDRWVSIFGAVTER-----ELRLYESAPWSPEAWSTPAHVFPLV---STRLVSSSRHSDV-IVFSVRCGTPQGVATHH  526 (774)
Q Consensus       456 ~~~~~w~~~~~~l~~~-----~l~~y~~~p~~~~~~~~~~~~~~l~---~~r~~~~s~~~~~-~~f~~~~~t~~g~~~~~  526 (774)
                      +...+|++..++|+-.     -++-|-+||-+    ++|-..-++.   +.|....-+--|. ++|.|++..+   .-++
T Consensus        37 ~~~~~W~k~RLvL~k~g~G~~y~LEfy~PPks----sKpK~~i~cs~I~EVR~tt~LEmPD~~nTFVlK~~n~---~eyi  109 (136)
T 1v5m_A           37 GGTAQWQKCRLLLRRAVAGERFRLEFFVPPKA----SRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLKVENG---AEYI  109 (136)
T ss_dssp             CCSCCCEEEEEEEEECSSSCCEEEEEESSTTS----SSCSSCEETTTCCBCCCCCCSSSCCCTTEECCBCTTS---CBEE
T ss_pred             CcccchhheeeEEEEccCCCceEEEEecCCcc----cCCccccchhhhhhhhhccccccCCccceEEEEecCC---cEEE
Confidence            4678998888887643     33334466643    4444444433   3442221122444 9999997643   4699


Q ss_pred             EEecChhHHHHHHHHHHHHH
Q psy4897         527 LRAETHRDLANWARTLVQAT  546 (774)
Q Consensus       527 ~~~et~~dl~~w~~~l~~~~  546 (774)
                      |-+.+..||..|...|..|+
T Consensus       110 ~ea~d~~q~~sWla~Ir~C~  129 (136)
T 1v5m_A          110 LETIDSLQKHSWVADIQGCV  129 (136)
T ss_dssp             EECSSHHHHHHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHHHHhhc
Confidence            99999999999999985544

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.67  E-value=0.24  Score=44.18  Aligned_cols=41  Identities=15%  Similarity=0.301  Sum_probs=34.5

Q ss_pred             CCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhhH
Q psy4897         320 SENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTL  362 (774)
Q Consensus       320 ~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~  362 (774)
                      .+.++|+|..+  .++++|+|++.+++.+|++||..++.....
T Consensus        65 ~~~~~F~I~~~--~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~  105 (114)
T 2da0_A           65 EDKKSFDLISH--NRTYHFQAEDEQDYVAWISVLTNSKEEALT  105 (114)
T ss_dssp             SSSSCEEEEET--TEEEEEECSSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEcC--CcEEEEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence            35679999964  578999999999999999999988875544

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.66  E-value=0.43  Score=42.80  Aligned_cols=56  Identities=25%  Similarity=0.337  Sum_probs=41.3

Q ss_pred             CcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhhH
Q psy4897         302 RYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTL  362 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~  362 (774)
                      +.|++.-|.+..    .+.++++|.|..+++ ++++|+|++.+++.+|++||..++.....
T Consensus        53 g~I~L~~~~v~~----~~~~~~~F~i~~~~~-r~~~l~a~s~~e~~~Wi~al~~~~~~~~~  108 (120)
T 2d9x_A           53 GTLQLAGAVISP----SDEDSHTFTVNAASG-EQYKLRATDAKERQHWVSRLQICTQHHTE  108 (120)
T ss_dssp             EEEECTTCCEEC----CSSSSSCEEECCSSS-CCEEECCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEcceEEEEe----cCCCCCEEEEEcCCC-CEEEEECCCHHHHHHHHHHHHHHHHHhhh
Confidence            344554443322    244678999998764 57999999999999999999998875443

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=89.34  E-value=0.6  Score=41.62  Aligned_cols=57  Identities=12%  Similarity=0.120  Sum_probs=40.7

Q ss_pred             CcccceeeEeeecccc-cCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhh
Q psy4897         302 RYLPLQLCYLVRNYKH-YDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHV  359 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~-~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~  359 (774)
                      +.+++.-+.+...... ...+.++|.|..+++ ++++|+|++.+++.+|++||..++..
T Consensus        53 g~i~l~~~~v~~~~~~~~~~~~~~f~i~~~~~-r~~~l~a~s~~e~~~Wi~al~~a~~~  110 (123)
T 1upq_A           53 GSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGM-RTYVLAADTLEDLRGWLRALGRASRA  110 (123)
T ss_dssp             EEEEGGGCEEEECCSSCTTSSSSEEEEECTTS-CCEEEECSSHHHHHHHHHHHHHHHC-
T ss_pred             eEEECCCCEEEECCCCccCCCcEEEEEECCCC-eEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            4455555554442221 233678999987654 47899999999999999999998874

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=89.31  E-value=0.53  Score=43.10  Aligned_cols=38  Identities=21%  Similarity=0.260  Sum_probs=33.3

Q ss_pred             CCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         320 SENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       320 ~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      .+.++|.|...+++ +++|+|++.+++.+|++||..++.
T Consensus        77 ~~~~~F~I~~~~~r-~~~l~A~s~~e~~~Wi~al~~a~~  114 (130)
T 2d9v_A           77 SRDGLLTVNLREGS-RLHLCAETRDDAIAWKTALMEANS  114 (130)
T ss_dssp             CTTTEEEEEETTSC-EEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CcCcEEEEEeCCCC-EEEEEcCCHHHHHHHHHHHHHHHc
Confidence            36789999987765 799999999999999999998875

>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1

Probab=89.21  E-value=0.7  Score=44.17  Aligned_cols=58  Identities=12%  Similarity=0.167  Sum_probs=47.5

Q ss_pred             cCcccceeeEeeecccccCCCCceEEEecCCC-ceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         301 TRYLPLQLCYLVRNYKHYDSENRTLELHSPDG-VHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       301 ~~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg-~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      .+.+.+.-|.+.........+.+.|.|.++.. .+++++.+++.+++.+|++||..++-
T Consensus        90 kG~IdL~gc~V~~~~~~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~  148 (150)
T 2fjl_A           90 RGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQ  148 (150)
T ss_dssp             CEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             cceEecCccEEEeccCCCCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence            57778888888773333345889999999876 78999999999999999999998764

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A

Probab=89.12  E-value=1.1  Score=42.88  Aligned_cols=77  Identities=14%  Similarity=-0.017  Sum_probs=54.9

Q ss_pred             ceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHHHH
Q psy4897         460 RWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLANWA  539 (774)
Q Consensus       460 ~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~w~  539 (774)
                      .|+.++++||+.-.++|-+|--..--+..|....    +++...+    ..+|.|.|+.    ++++|... ..+-..|.
T Consensus        65 ~~kkR~liLT~~PrL~Yvdp~~~~~KGeIpls~~----l~ve~k~----~~~F~I~Tp~----RtY~~~d~-~~~AqeWv  131 (151)
T 1w1g_A           65 FARRRQLLLTEGPHLYYVDPVNKVLKGEIPWSQE----LRPEAKN----FKTFFVHTPN----RTYYLMDP-SGNAHKWC  131 (151)
T ss_dssp             EEEEEEEEEETTTEEEEEETTTTEEEEEECCCTT----CEEEESS----SSEEEEEETT----EEEEEECT-TSCHHHHH
T ss_pred             cceeEEEEEcCCceEEEEcCccccccceEecCCC----eeEEEcC----CCEEEEECCC----ceEEEEcC-ccCHHHHH
Confidence            3999999999999999999875544444444421    2322111    2489999883    79999886 67778899


Q ss_pred             HHHHHHHHHH
Q psy4897         540 RTLVQATHSC  549 (774)
Q Consensus       540 ~~l~~~~~~~  549 (774)
                      ++|..+.+..
T Consensus       132 ~aI~~~~~~~  141 (151)
T 1w1g_A          132 RKIQEVWRQR  141 (151)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9888887643

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.12  E-value=0.45  Score=42.72  Aligned_cols=53  Identities=17%  Similarity=0.276  Sum_probs=39.5

Q ss_pred             CcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhh
Q psy4897         302 RYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHV  359 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~  359 (774)
                      +.|++.-+.+...   .+.+.++|.|..+  .++.+|+|++.+++.+|++||..++..
T Consensus        53 g~I~L~~~~~~~~---~~~~~~~F~i~~~--~r~~~l~a~s~~e~~~Wi~al~~~~~~  105 (119)
T 2dhk_A           53 DSIDLSSAVFDCK---ADAEEGIFEIKTP--SRVITLKAATKQAMLYWLQQLQMKRWE  105 (119)
T ss_dssp             EEEEGGGCEEEEC---TTGGGCEEEEECS--SCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cEEECCCCEEEec---CCCCCCEEEEEeC--CcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            4455554444431   2346789999876  668999999999999999999988743

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=89.11  E-value=0.62  Score=42.29  Aligned_cols=42  Identities=29%  Similarity=0.464  Sum_probs=34.0

Q ss_pred             CCCceEEEec--CCC----------------ceeEEEeeCChHhHHHHHHHHHHHhhhhh
Q psy4897         320 SENRTLELHS--PDG----------------VHSCILRASDASEASLWFNTLHSTLHVLT  361 (774)
Q Consensus       320 ~r~r~FeL~s--~dg----------------~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~  361 (774)
                      .++++|+|..  +..                .++++|+|++.+++.+|++||..+|..+.
T Consensus        72 ~~~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~~~~  131 (134)
T 2y7b_A           72 ARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLVDIR  131 (134)
T ss_dssp             CCTTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHh
Confidence            4788999975  221                14799999999999999999999988653

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=89.08  E-value=4.7  Score=41.83  Aligned_cols=58  Identities=16%  Similarity=0.330  Sum_probs=39.8

Q ss_pred             cCcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhh
Q psy4897         301 TRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLT  361 (774)
Q Consensus       301 ~~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~  361 (774)
                      .+.|++.-|...... ....+.++|.|..+  .++++|.|++.+++.+|++||...+....
T Consensus        58 ~g~I~L~~~~~V~~~-~~~~~~~~F~I~t~--~rty~l~A~se~e~~~Wi~aL~~~~~~~k  115 (264)
T 1qqg_A           58 KRSIPLESCFNINKR-ADSKNKHLVALYTR--DEHFAIAADSEAEQDSWYQALLQLHNRAK  115 (264)
T ss_dssp             SEEEEGGGEEEEEEE-CCSSCSSEEEEEES--SCEEEEECSSHHHHHHHHHHHHHHC----
T ss_pred             ceEEEeeceEEEEec-cCCCCCcEEEEEEC--CEEEEEEeCCHHHHHHHHHHHHHHHHhcc
Confidence            345666655422111 12447789999976  56899999999999999999999887554

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=88.45  E-value=0.46  Score=41.72  Aligned_cols=39  Identities=15%  Similarity=0.174  Sum_probs=33.6

Q ss_pred             CCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhh
Q psy4897         320 SENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHV  359 (774)
Q Consensus       320 ~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~  359 (774)
                      .++++|.|..++ .++.+|+|++.+++.+|++||..++..
T Consensus        64 ~~~~~F~i~~~~-~r~~~l~A~s~~e~~~Wi~al~~~~~~  102 (107)
T 2cof_A           64 DHLYSFRILHKG-EELAKLEAKSSEEMGHWLGLLLSESGS  102 (107)
T ss_dssp             TBSCEEEEEETT-EEEEEEECSSHHHHHHHHHHHHHHSSC
T ss_pred             CCCeEEEEEeCC-CeEEEEEcCCHHHHHHHHHHHHHHHcC
Confidence            467899998854 668999999999999999999987763

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=88.40  E-value=0.65  Score=48.28  Aligned_cols=58  Identities=14%  Similarity=0.173  Sum_probs=43.2

Q ss_pred             CcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhh
Q psy4897         302 RYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLT  361 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~  361 (774)
                      +.|++.-|.+.. ......+.++|.|...+++ +++++|++.+++.+|++||..++..+.
T Consensus        70 g~I~L~~~~v~~-~~~~~kk~~~F~I~t~~~r-~y~f~A~s~ee~~~Wi~aI~~a~~~~~  127 (263)
T 3a8p_A           70 CALFAEDSIVQS-VPEHPKKEHVFCLSNSCGD-VYLFQATSQTDLENWVTAIHSACASLF  127 (263)
T ss_dssp             EEEECTTCEEEE-CTTCSSCSSEEEEECTTSC-EEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEcCCcEEEE-CCcCCCCCCEEEEEcCCCc-EEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence            445665555443 2222347899999987655 789999999999999999999998653

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.28  E-value=0.63  Score=41.43  Aligned_cols=38  Identities=13%  Similarity=0.302  Sum_probs=32.0

Q ss_pred             CCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         320 SENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       320 ~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      .++++|.|...+. +.++|+|++.+++.+|++||..++.
T Consensus        83 ~~~~~F~i~~~~~-r~~~l~a~s~~e~~~Wi~al~~a~~  120 (122)
T 2yry_A           83 SRKHTFKAEHAGV-RTYFFSAESPEEQEAWIQAMGEAAR  120 (122)
T ss_dssp             SSSSEEEEECSSS-CEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             CcccEEEEecCCC-cEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            4678999975543 5799999999999999999998874

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=88.12  E-value=0.49  Score=41.64  Aligned_cols=37  Identities=19%  Similarity=0.252  Sum_probs=31.4

Q ss_pred             CCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         321 ENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       321 r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      ++++|.|..++ .++.+|+|++.+++.+|++||..+..
T Consensus        75 ~~~~F~i~~~~-~r~~~l~a~s~~e~~~Wi~al~~a~~  111 (112)
T 3aj4_A           75 KDCMLQIVCRD-GKTISLCAESTDDCLAWKFTLQDSRT  111 (112)
T ss_dssp             GGGEEEEEETT-SCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             cCcEEEEEecC-CcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence            36799998655 45899999999999999999998764

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=87.67  E-value=0.73  Score=41.37  Aligned_cols=57  Identities=25%  Similarity=0.293  Sum_probs=41.2

Q ss_pred             CcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhh
Q psy4897         302 RYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLT  361 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~  361 (774)
                      +.+++.-|..... .....++++|.|..+  .++++|+|++.+++.+|++||..+|..+.
T Consensus        59 g~i~L~~~~~v~~-~~~~~~~~~F~i~~~--~r~~~l~a~s~~e~~~Wi~al~~~i~~~~  115 (126)
T 1fao_A           59 RILDLTECSAVQF-DYSQERVNCFCLVFP--FRTFYLCAKTGVEADEWIKILRWKLSQIR  115 (126)
T ss_dssp             EEEEGGGCCEEEE-ECSSSSSSEEEEEET--TEEEEEECSSHHHHHHHHHHHHHHHHTC-
T ss_pred             eEEEccceEEEEe-cccCCCCCEEEEEeC--CcEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence            3455554443321 122346789999874  56899999999999999999999998744

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=87.59  E-value=0.52  Score=43.93  Aligned_cols=41  Identities=22%  Similarity=0.363  Sum_probs=33.3

Q ss_pred             CCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhhH
Q psy4897         321 ENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTL  362 (774)
Q Consensus       321 r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~  362 (774)
                      +.++|.|..+++ ++++|+|++.+++..|++||..++..+..
T Consensus        83 ~~~~F~I~~~~~-r~~~l~a~s~~e~~~Wi~al~~~i~~~~~  123 (148)
T 1u5f_A           83 KDCCFEICAPDK-RIYQFTAASPKDAEEWVQQLKFILQDLGS  123 (148)
T ss_dssp             GGGEEEEECTTS-CEEEEECSSHHHHHHHHHHHHHHCC----
T ss_pred             CccEEEEECCCC-cEEEEECCCHHHHHHHHHHHHHHHHHhcC
Confidence            568999998764 48999999999999999999999987654

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=87.58  E-value=0.64  Score=44.27  Aligned_cols=40  Identities=18%  Similarity=0.492  Sum_probs=34.9

Q ss_pred             CCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhh
Q psy4897         320 SENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLT  361 (774)
Q Consensus       320 ~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~  361 (774)
                      .+.++|.|..++  +.++|+|++.+++.+|++||..++....
T Consensus        75 ~~~~~F~I~t~~--r~~~l~A~s~~e~~~Wi~ai~~~~~~~~  114 (168)
T 2j59_M           75 KRKNVFRLTTSD--CECLFQAEDRDDMLAWIKTIQESSNLNE  114 (168)
T ss_dssp             SCSSEEEEECSS--CEEEEECSSHHHHHHHHHHHHHHCCCCH
T ss_pred             CCCCEEEEEeCC--ceEEEEcCCHHHHHHHHHHHHHHHhcCc
Confidence            477899999877  5799999999999999999999987433

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=87.45  E-value=0.79  Score=42.47  Aligned_cols=56  Identities=14%  Similarity=0.148  Sum_probs=40.8

Q ss_pred             cCcccceeeEeeecccccCCCCceEEEecCCCc------eeEEEeeCChHhHHHHHHHHHHH
Q psy4897         301 TRYLPLQLCYLVRNYKHYDSENRTLELHSPDGV------HSCILRASDASEASLWFNTLHST  356 (774)
Q Consensus       301 ~~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~------~~~~Lr~~d~~~~~~W~~Ai~~n  356 (774)
                      .+.+||.-..+.--..+...+.++|+|.++|++      .+..|.|.+.+++.+|+.||..+
T Consensus        54 ~G~IpL~~~~vr~v~~~~~~rk~~F~l~~~d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra  115 (125)
T 1dyn_A           54 KYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRA  115 (125)
T ss_dssp             EEEEECTTEEEEECCSCSSSSCEEEEEEETTSSCSSTTCSSEEEEESSHHHHHHHHHHHHHT
T ss_pred             ceEEECCCceEeccCCCCCCCceEEEEECCCCccccccceEEEEeCCCHHHHHHHHHHHHhC
Confidence            445666544443222233467889999999865      58999999999999999999443

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=87.17  E-value=0.87  Score=41.64  Aligned_cols=57  Identities=19%  Similarity=0.362  Sum_probs=42.6

Q ss_pred             cCcccceeeEeeecccccCC--------CCceEEEecCCC-----ceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         301 TRYLPLQLCYLVRNYKHYDS--------ENRTLELHSPDG-----VHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       301 ~~~ipl~~~~l~R~~~~~d~--------r~r~FeL~s~dg-----~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      .+.++|.-|.+.--. ..+.        +++.|.|...+.     .+..+++|++.+++.+|++||...++
T Consensus        49 ~gsI~L~~c~v~~~~-~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~~  118 (120)
T 4a6h_A           49 VMSLALSECTVTEHS-RKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILTS  118 (120)
T ss_dssp             SEEEEGGGEEEEEEC-CCCC---------CCEEEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             eEEEECCCCEEEEcc-cccccccccccCCCcEEEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHhc
Confidence            467777777766522 2222        778999998774     46999999999999999999997653

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=87.05  E-value=0.53  Score=42.43  Aligned_cols=38  Identities=13%  Similarity=0.297  Sum_probs=33.3

Q ss_pred             CCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhh
Q psy4897         321 ENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHV  359 (774)
Q Consensus       321 r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~  359 (774)
                      +.++|.|..++++ .++|+|++.+++.+|++||..++..
T Consensus        88 ~~~~F~I~~~~~r-~~~l~a~s~~e~~~Wi~al~~~~~~  125 (129)
T 1x1g_A           88 QGNLFKVITKDDT-HYYIQASSKAERAEWIEAIKKLTSG  125 (129)
T ss_dssp             CSSCEEECCTTCC-CEEECCSSHHHHHHHHHHHHHHSSS
T ss_pred             CCceEEEEcCCCC-EEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            5789999987654 7999999999999999999998864

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=86.58  E-value=1  Score=42.89  Aligned_cols=37  Identities=11%  Similarity=0.241  Sum_probs=31.9

Q ss_pred             CCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         320 SENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       320 ~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      .++++|.|..++  ++++++|++.+++.+|++||...+.
T Consensus        77 ~~~~~F~I~t~~--r~~~f~A~s~ee~~eWi~aI~~v~~  113 (149)
T 1x1f_A           77 KNCAKFTLVLPK--EEVQLKTENTESGEEWRGFILTVTE  113 (149)
T ss_dssp             SCCCEEEEECSS--CCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CcCcEEEEEcCC--CEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            356899999865  4689999999999999999998876

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=86.52  E-value=1.3  Score=41.10  Aligned_cols=55  Identities=13%  Similarity=0.196  Sum_probs=38.4

Q ss_pred             CcccceeeEeeecccc--cCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         302 RYLPLQLCYLVRNYKH--YDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~--~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      +.|+|.-+.+.--.+.  ...+.++|++..+ +. +++|.|++.+++.+|++||+.++.
T Consensus        54 G~I~L~g~tV~~~~~~~~~~~~k~~F~~v~~-~~-ty~~~Adseee~~~WikAi~~A~~  110 (126)
T 1wi1_A           54 ELLQLDGYTVDYTDPQPGLEGGRAFFNAVKE-GD-TVIFASDDEQDRILWVQAMYRATG  110 (126)
T ss_dssp             EEEECSSCEEEECCCCSSCCSCSSEEEEECS-SC-EEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             eEEECCCcEEEEecCCcccccCceEEEEecC-Cc-eEEEEcCCHHHHHHHHHHHHHHhc
Confidence            4455554443221122  2347789998865 33 599999999999999999998885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	774
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	2e-28
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	1e-22
d2adza1	105	b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mo	8e-25
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	2e-24
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	1e-20
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	3e-24
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	1e-22
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	5e-22
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	1e-17
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	6e-22
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	4e-19
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	8e-22
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	3e-19
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	3e-21
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	2e-17
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-21
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-19
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	4e-21
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	2e-17
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	4e-21
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	2e-18
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	1e-20
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	3e-18
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	1e-20
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	6e-18
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	1e-20
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	5e-18
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	2e-20
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	6e-18
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	2e-20
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	1e-19
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	2e-20
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	9e-19
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-20
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	5e-20
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	3e-20
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	6e-20
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	3e-20
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	3e-16
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-20
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	6e-19
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	4e-20
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	3e-16
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	5e-20
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	2e-17
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	7e-20
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	1e-18
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	8e-20
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	6e-18
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	8e-20
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	5e-16
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	1e-19
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	1e-18
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	1e-19
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	1e-18
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-19
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	5e-16
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	2e-19
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	1e-17
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	3e-19
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	2e-17
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	3e-19
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	1e-16
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	5e-19
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	6e-16
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	5e-19
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	8e-19
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	6e-19
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	7e-17
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	1e-18
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	7e-17
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	1e-18
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	1e-15
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	1e-18
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	2e-18
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	2e-18
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	3e-17
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	3e-18
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	1e-16
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	3e-18
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-17
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	4e-18
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	9e-17
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	5e-18
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	4e-16
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	7e-18
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	8e-18
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	1e-17
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	1e-17
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	1e-17
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	4e-17
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	1e-17
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	3e-15
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	2e-17
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	9e-15
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	5e-17
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	9e-17
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	9e-17
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	2e-16
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	9e-17
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	1e-16
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	1e-16
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	9e-16
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	1e-16
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	5e-16
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	2e-16
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	3e-14
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	2e-16
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	3e-16
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	5e-16
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	6e-14
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	4e-15
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	3e-12
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	1e-14
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	8e-13
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	3e-13
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	5e-13
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	1e-12
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	5e-11
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	4e-12
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	7e-10
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	4e-11
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	4e-10
d1fc6a3	92	b.36.1.3 (A:157-248) Photosystem II D1 C-terminal	1e-07
d1fc6a3	92	b.36.1.3 (A:157-248) Photosystem II D1 C-terminal	2e-07
d2z9ia1	88	b.36.1.4 (A:227-314) Protease PepD {Mycobacterium	3e-06
d2z9ia1	88	b.36.1.4 (A:227-314) Protease PepD {Mycobacterium	5e-06
d1lcya1	100	b.36.1.4 (A:226-325) Mitochondrial serine protease	0.001
d1lcya1	100	b.36.1.4 (A:226-325) Mitochondrial serine protease	0.002

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (268), Expect = 2e-28
 Identities = 65/87 (74%), Positives = 77/87 (88%)

Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
           Q+R + V+K++  GLGISIKGG+ENKMPILISKIFKG+AADQTE L+VGDAILSVNGEDL
Sbjct: 4   QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDL 63

Query: 234 REATHDEAVKALKRAGKLVELEVKYLR 260
             ATHDEAV+ALK+ GK V LEVKY++
Sbjct: 64  SSATHDEAVQALKKTGKEVVLEVKYMK 90

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.3 bits (224), Expect = 1e-22
 Identities = 59/74 (79%), Positives = 65/74 (87%)

Query: 29  TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
            +  GLGISIKGG+ENKMPILISKIFKG+AADQTE L+VGDAILSVNGEDL  ATHDEAV
Sbjct: 13  ADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAV 72

Query: 89  KALKRAGKVVELEV 102
           +ALK+ GK V LEV
Sbjct: 73  QALKKTGKEVVLEV 86

>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Alpha-1-syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.2 bits (242), Expect = 8e-25
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 295 SSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLH 354
            S  ++ +++ L++ Y+ R     D E R LE+ + DG  +  LRA D + A  W   + 
Sbjct: 41  VSPLSEAKHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQ 100

Query: 355 STL 357
           + +
Sbjct: 101 AQI 103

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.7 bits (238), Expect = 2e-24
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 9/95 (9%)

Query: 174 QKRIIRVKKSENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDA 224
           Q R + + +  +  LGISI GG+         E    I I  + +   A +   L  GD 
Sbjct: 1   QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 60

Query: 225 ILSVNGEDLREATHDEAVKALKRAGKLVELEVKYL 259
           I+ V+G DLR+A+H++AV+A+++AG  V   V+ +
Sbjct: 61  IVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI 95

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (210), Expect = 1e-20
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 9/82 (10%)

Query: 30  ENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 80
            +  LGISI GG+         E    I I  + +   A +   L  GD I+ V+G DLR
Sbjct: 11  PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLR 70

Query: 81  EATHDEAVKALKRAGKVVELEV 102
           +A+H++AV+A+++AG  V   V
Sbjct: 71  DASHEQAVEAIRKAGNPVVFMV 92

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 95.3 bits (237), Expect = 3e-24
 Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
           + +K+     LGI+I G +E   PI+IS + KG  A++T  +++GD IL++N   L+   
Sbjct: 7   VELKR-YGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKP 65

Query: 238 HDEAVKALKRAGKLVELEVKYLREVTP 264
             EA+  L+ AG+ V L++K   +  P
Sbjct: 66  LSEAIHLLQMAGETVTLKIKKQTDAQP 92

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 90.7 bits (225), Expect = 1e-22
 Identities = 27/73 (36%), Positives = 44/73 (60%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
               LGI+I G +E   PI+IS + KG  A++T  +++GD IL++N   L+     EA+ 
Sbjct: 12  YGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIH 71

Query: 90  ALKRAGKVVELEV 102
            L+ AG+ V L++
Sbjct: 72  LLQMAGETVTLKI 84

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.1 bits (223), Expect = 5e-22
 Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 14/124 (11%)

Query: 172 ENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGE 231
              ++ + +   +   LG++I+GG E  + I I+ +  G  A+ +  L VGD IL VNG 
Sbjct: 18  GGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGS-GLKVGDQILEVNGR 76

Query: 232 DLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDSPPSP 291
                 HDEAV+ LK +  L+ L VK +  + P+ R  + + E  W            S 
Sbjct: 77  SFLNILHDEAVRLLKSSRHLI-LTVKDVGRL-PHAR--TTVDETKW---------IASSS 123

Query: 292 SPQS 295
            P S
Sbjct: 124 GPSS 127

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.4 bits (190), Expect = 1e-17
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
          +   LG++I+GG E  + I I+ +  G  A+ +  L VGD IL VNG       HDEAV+
Sbjct: 30 DGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGS-GLKVGDQILEVNGRSFLNILHDEAVR 88

Query: 90 ALKRAGKVV 98
           LK +  ++
Sbjct: 89 LLKSSRHLI 97

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.2 bits (221), Expect = 6e-22
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTE-QLYVGDAILSVNGEDLR 234
            +IR+K  EN   G ++KGG + KMP+++S++  G  AD    +L  GD ++ +NG D+ 
Sbjct: 10  VLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 69

Query: 235 EATHDEAVKALKRAGKLVELEVK 257
           E THD+ V  +K + +    E+ 
Sbjct: 70  EHTHDQVVLFIKASCERHSGELM 92

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (200), Expect = 4e-19
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTE-QLYVGDAILSVNGEDLREATHDEAV 88
           EN   G ++KGG + KMP+++S++  G  AD    +L  GD ++ +NG D+ E THD+ V
Sbjct: 18  ENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVV 77

Query: 89  KALKRAGKVVELEV 102
             +K + +    E+
Sbjct: 78  LFIKASCERHSGEL 91

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.0 bits (218), Expect = 8e-22
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 3/87 (3%)

Query: 174 QKRIIRVKKSENNGLGISIKGGK---ENKMPILISKIFKGMAADQTEQLYVGDAILSVNG 230
           +  II V   + NG+G+SI   K   ++K+ I +  + KG AAD   +L  GD +LSV+G
Sbjct: 2   EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 61

Query: 231 EDLREATHDEAVKALKRAGKLVELEVK 257
             L   + + A + + R   +V LEV 
Sbjct: 62  RSLVGLSQERAAELMTRTSSVVTLEVA 88

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (199), Expect = 3e-19
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 30  ENNGLGISIKGGK---ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
           + NG+G+SI   K   ++K+ I +  + KG AAD   +L  GD +LSV+G  L   + + 
Sbjct: 12  KQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQER 71

Query: 87  AVKALKRAGKVVELEV 102
           A + + R   VV LEV
Sbjct: 72  AAELMTRTSSVVTLEV 87

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 86.9 bits (215), Expect = 3e-21
 Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 3/102 (2%)

Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
           + +  + R I + +    GLG +I GG E+   I IS I  G  AD + +L  GD ILSV
Sbjct: 4   EDIPREPRRIVIHRGST-GLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSV 61

Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKAS 270
           NG DLR A+H++A  ALK AG+ V +  +Y  E    F +A+
Sbjct: 62  NGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRF-EAN 102

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.1 bits (187), Expect = 2e-17
 Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
            + GLG +I GG E+   I IS I  G  AD + +L  GD ILSVNG DLR A+H++A  
Sbjct: 18  GSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAI 76

Query: 90  ALKRAGKVVELEV 102
           ALK AG+ V +  
Sbjct: 77  ALKNAGQTVTIIA 89

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.7 bits (217), Expect = 3e-21
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 4/101 (3%)

Query: 159 SSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQ 218
           SS + T D    ++       +KKS N G G +I GG E    + +  +     A Q  +
Sbjct: 5   SSGLFTRD-ASQLKGTFLSTTLKKS-NMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGK 62

Query: 219 LYVGDAILSVNGEDLREATHDEAVKALKRA--GKLVELEVK 257
           +  GD I+ +N   +   TH + VK  +    G+ V L + 
Sbjct: 63  METGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLC 103

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (202), Expect = 3e-19
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
            N G G +I GG E    + +  +     A Q  ++  GD I+ +N   +   TH + VK
Sbjct: 28  SNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVK 87

Query: 90  ALKRA--GKVVELEVGVGY 106
             +    G+ V L +  GY
Sbjct: 88  LFQSVPIGQSVNLVLCRGY 106

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.4 bits (214), Expect = 4e-21
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 12/100 (12%)

Query: 172 ENQKRIIRVKKSENNGLGISIKGGKE--------NKMPILISKIFKGMAADQTEQLYVGD 223
           E  K+ IRV+  ++  LG SI GG          +   I ++++     A +   L  GD
Sbjct: 7   ELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGD 64

Query: 224 AILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263
            I+  NG       H +AV  LK     VEL +   REV+
Sbjct: 65  KIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV--REVS 102

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (187), Expect = 2e-17
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 10/81 (12%)

Query: 30  ENNGLGISIKGGKE--------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 81
           ++  LG SI GG          +   I ++++     A +   L  GD I+  NG     
Sbjct: 19  KDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFIN 76

Query: 82  ATHDEAVKALKRAGKVVELEV 102
             H +AV  LK     VEL +
Sbjct: 77  IEHGQAVSLLKTFQNTVELII 97

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.5 bits (214), Expect = 4e-21
 Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 8/102 (7%)

Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVG 222
           + V  ++  + ++K    G GI++ GG++N      +  I+IS +  G  AD    L   
Sbjct: 2   EEVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADG--LLQEN 59

Query: 223 DAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
           D ++ VNG  + +  H  AV+ L+++GK+  + VK  R+V  
Sbjct: 60  DRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQV 101

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.8 bits (194), Expect = 2e-18
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 8/79 (10%)

Query: 30  ENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
              G GI++ GG++N      +  I+IS +  G  AD    L   D ++ VNG  + +  
Sbjct: 17  SKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADG--LLQENDRVVMVNGTPMEDVL 74

Query: 84  HDEAVKALKRAGKVVELEV 102
           H  AV+ L+++GK+  + V
Sbjct: 75  HSFAVQQLRKSGKIAAIVV 93

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.3 bits (211), Expect = 1e-20
 Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 167 IPDSVENQKRIIRVK--KSENNGLGISIKGGK--ENKMPILISKIFKGMAADQTEQLYVG 222
           + +SV        VK  K  +  LGI+I      +   P++IS I KG  A +T  L +G
Sbjct: 1   VAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELG 60

Query: 223 DAILSVNGEDLREATHDEAVKALKRAGKLVELEVK 257
           D +L+++   L   + ++AV+ L++   LV+L+++
Sbjct: 61  DKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIR 95

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.4 bits (193), Expect = 3e-18
 Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 30  ENNGLGISIKGGK--ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
            +  LGI+I      +   P++IS I KG  A +T  L +GD +L+++   L   + ++A
Sbjct: 20  HSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDA 79

Query: 88  VKALKRAGKVVELEV 102
           V+ L++   +V+L++
Sbjct: 80  VQILQQCEDLVKLKI 94

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (210), Expect = 1e-20
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 8/96 (8%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGK------ENKMPILISKIFKGMAADQTEQLYV 221
           P  +E ++  + + + +  GLGISI GGK       +   I IS++ +   A +   + V
Sbjct: 2   PARIEEEELTLTILR-QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA-GVRV 59

Query: 222 GDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK 257
           GD +L VNG  L+ A H EAV+AL+ AG  V++ V 
Sbjct: 60  GDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVW 95

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (190), Expect = 6e-18
 Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 7/79 (8%)

Query: 30  ENNGLGISIKGGK------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
           +  GLGISI GGK       +   I IS++ +   A +   + VGD +L VNG  L+ A 
Sbjct: 17  QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGAE 75

Query: 84  HDEAVKALKRAGKVVELEV 102
           H EAV+AL+ AG  V++ V
Sbjct: 76  HHEAVEALRGAGTAVQMRV 94

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 85.0 bits (210), Expect = 1e-20
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 9/95 (9%)

Query: 172 ENQKRIIRVKKSENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVG 222
           E  +R+  +K   +  LG  I+ G          E +  I IS++  G  A+ T  L V 
Sbjct: 1   ETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVN 60

Query: 223 DAILSVNGEDLREATHDEAVKALKRAGKLVELEVK 257
           D ++ VNG ++   T D+    +      + + VK
Sbjct: 61  DEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVK 95

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 77.7 bits (191), Expect = 5e-18
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 26  YKYTENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNG 76
            K+  +  LG  I+ G          E +  I IS++  G  A+ T  L V D ++ VNG
Sbjct: 9   LKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNG 68

Query: 77  EDLREATHDEAVKALKRAGKVVELEV 102
            ++   T D+    +      + + V
Sbjct: 69  IEVAGKTLDQVTDMMVANSSNLIITV 94

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 84.6 bits (209), Expect = 2e-20
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMP------ILISKIFKGMAADQTEQLYVGDAILSVN 229
            ++ + K+     GI I  G+    P      I I  I     A    +L VGD ILS+N
Sbjct: 5   HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN 64

Query: 230 GEDLREATHDEAVKALKRAGKLVELEVK 257
           G+D+R +T    +  +K A   +ELE++
Sbjct: 65  GKDVRNSTEQAVIDLIKEADFKIELEIQ 92

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 77.2 bits (190), Expect = 6e-18
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 29  TENNGLGISIKGGKENKMP------ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 82
           T     GI I  G+    P      I I  I     A    +L VGD ILS+NG+D+R +
Sbjct: 12  TGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNS 71

Query: 83  THDEAVKALKRAGKVVELEV 102
           T    +  +K A   +ELE+
Sbjct: 72  TEQAVIDLIKEADFKIELEI 91

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.4 bits (211), Expect = 2e-20
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 176 RIIRVKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNG 230
           R  +      NGLGI I GGKE      ++   I+KI  G +A+QT +L  G  +L  NG
Sbjct: 20  RDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNG 79

Query: 231 EDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
             L   T++E    + +     E+ V+   ++  
Sbjct: 80  IPLTSKTYEEVQSIISQQSGEAEICVR--LDLNM 111

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (205), Expect = 1e-19
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 27  KYTENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 81
                NGLGI I GGKE      ++   I+KI  G +A+QT +L  G  +L  NG  L  
Sbjct: 25  HTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTS 84

Query: 82  ATHDEAVKALKRAGKVVELEVGVGYGRCG 110
            T++E    + +     E+ V +     G
Sbjct: 85  KTYEEVQSIISQQSGEAEICVRLDLNMSG 113

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.2 bits (208), Expect = 2e-20
 Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMP-ILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
            ++RVKKS    LGI+I+GG   + P   I  I +G +A    QL VG  IL VNG  LR
Sbjct: 8   TLVRVKKS-AATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLR 66

Query: 235 EATHDEAVKALKRAGKLVELEV 256
              H EA + +  A K  + + 
Sbjct: 67  GKEHREAARIIAEAFKTKDRDY 88

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (197), Expect = 9e-19
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 30  ENNGLGISIKGGKENKMP-ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
               LGI+I+GG   + P   I  I +G +A    QL VG  IL VNG  LR   H EA 
Sbjct: 15  SAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAA 74

Query: 89  KALKRAGKVVELEV 102
           + +  A K  + + 
Sbjct: 75  RIIAEAFKTKDRDY 88

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.2 bits (208), Expect = 3e-20
 Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
           + ++K    G G SI+GG+E KM + + ++ +   A +  ++ VGD I+ +NGE  R+ T
Sbjct: 15  VDMEKG-AKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMT 73

Query: 238 HDEAVKALKRAGKLVELEVK 257
           H  A++ +K  G+ V L +K
Sbjct: 74  HARAIELIKSGGRRVRLLLK 93

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (206), Expect = 5e-20
 Identities = 25/73 (34%), Positives = 43/73 (58%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
              G G SI+GG+E KM + + ++ +   A +  ++ VGD I+ +NGE  R+ TH  A++
Sbjct: 20  GAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIE 79

Query: 90  ALKRAGKVVELEV 102
            +K  G+ V L +
Sbjct: 80  LIKSGGRRVRLLL 92

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (206), Expect = 3e-20
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 180 VKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
           V  +     G  ++GGK+  MP+ IS+I  G  A Q+ QL  GD +++++G +    TH 
Sbjct: 5   VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHL 63

Query: 240 EAVKALKRAGKLVELEVK 257
           EA   +K A   + L ++
Sbjct: 64  EAQNKIKSASYNLSLTLQ 81

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.6 bits (204), Expect = 6e-20
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 29  TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
           T     G  ++GGK+  MP+ IS+I  G  A Q+ QL  GD +++++G +    TH EA 
Sbjct: 8   TGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHLEAQ 66

Query: 89  KALKRAGKVVELEV 102
             +K A   + L +
Sbjct: 67  NKIKSASYNLSLTL 80

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.8 bits (207), Expect = 3e-20
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
           P + EN+++ + +    + GLG SI  G   K  I IS +  G  + +   L +GD I+ 
Sbjct: 2   PGNRENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEV-GLEIGDQIVE 60

Query: 228 VNGEDLREATHDEAVKALKRAGKLV 252
           VNG D     H EAV  LK +  L 
Sbjct: 61  VNGVDFSNLDHKEAVNVLKSSRSLT 85

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (179), Expect = 3e-16
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 29 TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
            + GLG SI  G   K  I IS +  G  + +   L +GD I+ VNG D     H EAV
Sbjct: 17 VGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEV-GLEIGDQIVEVNGVDFSNLDHKEAV 75

Query: 89 KALKRAGKVV 98
            LK +  + 
Sbjct: 76 NVLKSSRSLT 85

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.8 bits (207), Expect = 3e-20
 Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
           ++  + +++   +G G  I GG E   PILI  +    +AD+  +L+ GD ++ V+G  +
Sbjct: 9   KELDVHLRR-MESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPV 67

Query: 234 REATHDEAVKALKRAGKLVELEVKYLREV 262
              TH   +  +  A +  ++ +   R+V
Sbjct: 68  AGKTHRYVIDLMHHAARNGQVNLTVRRKV 96

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (198), Expect = 6e-19
 Identities = 21/75 (28%), Positives = 37/75 (49%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
             +G G  I GG E   PILI  +    +AD+  +L+ GD ++ V+G  +   TH   + 
Sbjct: 18  MESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVID 77

Query: 90  ALKRAGKVVELEVGV 104
            +  A +  ++ + V
Sbjct: 78  LMHHAARNGQVNLTV 92

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.9 bits (207), Expect = 4e-20
 Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           RI+ +KK     LG +I+GGK +++ I ISK+     A +   L  GD +L+VN  D ++
Sbjct: 17  RIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRA-GLQEGDQVLAVNDVDFQD 75

Query: 236 ATHDEAVKALKRAGKLVELEVKYLR 260
             H +AV+ LK A + + + V++  
Sbjct: 76  IEHSKAVEILKTARE-ISMRVRFFS 99

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.1 bits (179), Expect = 3e-16
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 29 TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
               LG +I+GGK +++ I ISK+     A +   L  GD +L+VN  D ++  H +AV
Sbjct: 24 PPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRA-GLQEGDQVLAVNDVDFQDIEHSKAV 82

Query: 89 KALKRAGKVV 98
          + LK A ++ 
Sbjct: 83 EILKTAREIS 92

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (206), Expect = 5e-20
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 176 RIIRVKKSENNGLGISIKGGKENK-MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
            +  + K E  GLG S+ GG + +   I + ++F    A Q   +  G+ +LS+NG+ L+
Sbjct: 10  HVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLK 69

Query: 235 EATHDEAVKALKRAGKLVELEVKYLREVTP 264
             TH +A+  L++A +  +  +   R++TP
Sbjct: 70  GTTHHDALAILRQAREPRQAVIV-TRKLTP 98

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.1 bits (187), Expect = 2e-17
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 30  ENNGLGISIKGGKENK-MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
           E  GLG S+ GG + +   I + ++F    A Q   +  G+ +LS+NG+ L+  TH +A+
Sbjct: 18  EGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDAL 77

Query: 89  KALKRAGKVVELEV 102
             L++A +  +  +
Sbjct: 78  AILRQAREPRQAVI 91

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.1 bits (205), Expect = 7e-20
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKM--PILISKIFKGMAADQTEQLYVGDAI 225
           P   +   R+I V K    GLG+ I GG        + I ++  G    +  +L  GD +
Sbjct: 2   PLDRDPAFRVITVTKE--TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQL 59

Query: 226 LSVNGEDLREATHDEAVKALKRAGKLVE--LEVKYLR 260
           +S+N E +   + +EA   + RA    E   E+ ++R
Sbjct: 60  VSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR 96

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.2 bits (195), Expect = 1e-18
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 29  TENNGLGISIKGGKENKM--PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
           T+  GLG+ I GG        + I ++  G    +  +L  GD ++S+N E +   + +E
Sbjct: 15  TKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEE 74

Query: 87  AVKALKRA----GKVVELEV 102
           A   + RA        E+  
Sbjct: 75  AKSIITRAKLRSESPWEIAF 94

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 82.6 bits (204), Expect = 8e-20
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 178 IRVKKSENNGLGISIKGGKENK--MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           + +   + N LGISI G    +    I I  I KG A     ++  GD +L VN  +   
Sbjct: 5   VTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFEN 64

Query: 236 ATHDEAVKALKRAGK---LVELEVK 257
            ++D+AV+ L+        + L V 
Sbjct: 65  MSNDDAVRVLRDIVHKPGPIVLTVA 89

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 77.2 bits (190), Expect = 6e-18
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 30  ENNGLGISIKGGKENK--MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
           + N LGISI G    +    I I  I KG A     ++  GD +L VN  +    ++D+A
Sbjct: 11  KYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDA 70

Query: 88  VKALKRAGK---VVELEVG 103
           V+ L+        + L V 
Sbjct: 71  VRVLRDIVHKPGPIVLTVA 89

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (203), Expect = 8e-20
 Identities = 18/83 (21%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
           + R+++ +K+ +  +GI++K  + N    ++++I  G    +   L+VGD I  +NG  +
Sbjct: 1   RSRLVQFQKNTDEPMGITLKMNELN--HCIVARIMHGGMIHRQGTLHVGDEIREINGISV 58

Query: 234 REATHDEAVKALKRAGKLVELEV 256
              T ++  K L+     +  ++
Sbjct: 59  ANQTVEQLQKMLREMRGSITFKI 81

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (175), Expect = 5e-16
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
            +  +GI++K  + N    ++++I  G    +   L+VGD I  +NG  +   T ++  K
Sbjct: 11  TDEPMGITLKMNELN--HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQK 68

Query: 90  ALKRAGKVVELEV 102
            L+     +  ++
Sbjct: 69  MLREMRGSITFKI 81

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (202), Expect = 1e-19
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 4/86 (4%)

Query: 174 QKRIIRVKKSENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNG 230
           Q + I +++   +GLG SI GG       +PI +  +F   AA +  +L  GD I++VNG
Sbjct: 2   QCKSITLERG-PDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNG 60

Query: 231 EDLREATHDEAVKALKRAGKLVELEV 256
           + L   TH+EAV  LKR    V L V
Sbjct: 61  QSLEGVTHEEAVAILKRTKGTVTLMV 86

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (195), Expect = 1e-18
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 30  ENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
             +GLG SI GG       +PI +  +F   AA +  +L  GD I++VNG+ L   TH+E
Sbjct: 11  GPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEE 70

Query: 87  AVKALKRAGKVVELEV 102
           AV  LKR    V L V
Sbjct: 71  AVAILKRTKGTVTLMV 86

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.9 bits (202), Expect = 1e-19
 Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
             + V  +     G  I GG++   PI+++K+ +   A+    L  GD I+++NG+    
Sbjct: 6   SGLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAA-DLRPGDIIVAINGQSAEN 64

Query: 236 ATHDEAVKALKRAGKLVELEVK 257
             H EA   ++++   + L++ 
Sbjct: 65  MLHAEAQSKIRQSASPLRLQLD 86

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.2 bits (195), Expect = 1e-18
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 31  NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
               G  I GG++   PI+++K+ +   A+    L  GD I+++NG+      H EA   
Sbjct: 15  PAPWGFRISGGRDFHTPIIVTKVTERGKAEAA-DLRPGDIIVAINGQSAENMLHAEAQSK 73

Query: 91  LKRAGKVVELEV 102
           ++++   + L++
Sbjct: 74  IRQSASPLRLQL 85

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (203), Expect = 2e-19
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 169 DSVENQK--RIIRVKKSENNGLGISIKGGKE-NKMPILISKIFKGMAADQTEQLYVGDAI 225
           D+V N     ++ + K+  + LGIS+      NK  I I +I      D++  L+ GD I
Sbjct: 8   DTVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHI 67

Query: 226 LSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKAS 270
           LS++G  +   +  EA K L    + V LE+  + +     R +S
Sbjct: 68  LSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSS 112

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (178), Expect = 5e-16
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 29  TENNGLGISIKGGKE-NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
           T  + LGIS+      NK  I I +I      D++  L+ GD ILS++G  +   +  EA
Sbjct: 24  TPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEA 83

Query: 88  VKALKRAGKVVELEV 102
            K L    + V LE+
Sbjct: 84  TKLLASISEKVRLEI 98

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (202), Expect = 2e-19
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 175 KRIIRVKKSENNGLGISIKGGKENK---MPILISKIFKGMAADQTEQLYVGDAILSVNGE 231
            +   + K     LG+ + GGK      +   I+K+ KG  AD    L  GD +L  NG+
Sbjct: 19  NKRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGK 78

Query: 232 DLREATHDEAVKALKRAGKLVELEVKYLR 260
            L  AT++E    +  +    ++E+   R
Sbjct: 79  PLPGATNEEVYNIILESKSEPQVEIIVSR 107

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (189), Expect = 1e-17
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 30  ENNGLGISIKGGKENK---MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
               LG+ + GGK      +   I+K+ KG  AD    L  GD +L  NG+ L  AT++E
Sbjct: 28  SGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEE 87

Query: 87  AVKALKRAGKVVELEVGV 104
               +  +    ++E+ V
Sbjct: 88  VYNIILESKSEPQVEIIV 105

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.0 bits (202), Expect = 3e-19
 Identities = 29/110 (26%), Positives = 62/110 (56%), Gaps = 14/110 (12%)

Query: 168 PDSVENQK-RIIRVKKSENNGLGISIKGGKENK-MPILISKIFKGMAADQTEQLYVGDAI 225
           P+ +  +  R++R+KK     L ++++GG ++    +++S +++G AA++   +  GD I
Sbjct: 11  PEQIAGKDVRLLRIKKEG--SLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEI 68

Query: 226 LSVNGEDLREATHDEAVKALKRA----GKLVELEVK------YLREVTPY 265
           +++NG+ + + T  EA  AL++A    G  ++L V       Y  E+T +
Sbjct: 69  MAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDELTFF 118

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.2 bits (187), Expect = 2e-17
 Identities = 21/78 (26%), Positives = 47/78 (60%), Gaps = 5/78 (6%)

Query: 30  ENNGLGISIKGGKENK-MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
           +   L ++++GG ++    +++S +++G AA++   +  GD I+++NG+ + + T  EA 
Sbjct: 26  KEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAE 85

Query: 89  KALKRA----GKVVELEV 102
            AL++A    G  ++L V
Sbjct: 86  AALQKAWNQGGDWIDLVV 103

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.4 bits (203), Expect = 3e-19
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 13/108 (12%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKE----NKMPILISKIFKGMAADQTEQLYVGD 223
            +S E     I +  S + GLG+S+KG K       + I I  I  G AA +  +L + D
Sbjct: 19  LESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMND 78

Query: 224 AILSVNGEDLREATHDEAVKALKRAGKL-------VELEVKYLREVTP 264
            +++VNGE L   ++ EA++ L+R+  +       ++L +   R   P
Sbjct: 79  QLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVIL--RRSGP 124

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.7 bits (183), Expect = 1e-16
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query: 29  TENNGLGISIKGGKE----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
           + + GLG+S+KG K       + I I  I  G AA +  +L + D +++VNGE L   ++
Sbjct: 34  SGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSN 93

Query: 85  DEAVKALKRAGKVVELEVGV 104
            EA++ L+R+  +     G+
Sbjct: 94  HEAMETLRRSMSMEGNIRGM 113

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.7 bits (199), Expect = 5e-19
 Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           +I+R++K+ +  LG +++   +    ++IS+I KG AA+++  L+ GD +L +NG ++R 
Sbjct: 20  KIVRIEKARDIPLGATVRNEMD---SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRG 76

Query: 236 ATHDEAVKALKRAGKLVELEV 256
              +E    L      +   +
Sbjct: 77  KDVNEVFDLLSDMHGTLTFVL 97

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.9 bits (176), Expect = 6e-16
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 29  TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
             +  LG +++   +    ++IS+I KG AA+++  L+ GD +L +NG ++R    +E  
Sbjct: 27  ARDIPLGATVRNEMD---SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVF 83

Query: 89  KALKRAGKVVELEV 102
             L      +   +
Sbjct: 84  DLLSDMHGTLTFVL 97

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 80.3 bits (198), Expect = 5e-19
 Identities = 42/92 (45%), Positives = 53/92 (57%), Gaps = 8/92 (8%)

Query: 178 IRVKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGED 232
           I +++  N+GLG SI GG +N        I I+KI  G AA Q  +L V D+IL VN  D
Sbjct: 5   ITLER-GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 63

Query: 233 LREATHDEAVKALKRAGKLVELEVKYLREVTP 264
           +RE TH  AV+ALK AG +V L V   R   P
Sbjct: 64  VREVTHSAAVEALKEAGSIVRLYVM--RRKPP 93

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.6 bits (196), Expect = 8e-19
 Identities = 39/78 (50%), Positives = 47/78 (60%), Gaps = 5/78 (6%)

Query: 30  ENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
            N+GLG SI GG +N        I I+KI  G AA Q  +L V D+IL VN  D+RE TH
Sbjct: 10  GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 69

Query: 85  DEAVKALKRAGKVVELEV 102
             AV+ALK AG +V L V
Sbjct: 70  SAAVEALKEAGSIVRLYV 87

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.2 bits (200), Expect = 6e-19
 Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 171 VENQKRIIRVKKSENNGLGISIKGGK----ENKMPILISKIFKGMAADQTEQLYVGDAIL 226
           V  +   + +      G GI ++G          P LIS I     A++   L +GD ++
Sbjct: 12  VHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVM 71

Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKAS 270
           ++NG    ++T +EA + L+ +    ++ ++   +V      +S
Sbjct: 72  AINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSS 115

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.1 bits (184), Expect = 7e-17
 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 30  ENNGLGISIKGGK----ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
              G GI ++G          P LIS I     A++   L +GD ++++NG    ++T +
Sbjct: 25  PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFE 84

Query: 86  EAVKALKRAGKVVELEVGVGY 106
           EA + L+ +    ++ + + +
Sbjct: 85  EANQLLRDSSITSKVTLEIEF 105

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (197), Expect = 1e-18
 Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 7/101 (6%)

Query: 170 SVENQKRIIRVKKSENNGLGISIKGGK------ENKMPILISKIFKGMAADQTEQLYVGD 223
           S  + + +  + +S   GLG SI GGK           I +S+I +G AA +   L VGD
Sbjct: 3   SGSSGRHVACLARS-ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGD 61

Query: 224 AILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
            +LS+NG D+ EA HD AV  L  A   + L ++      P
Sbjct: 62  RVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAGSGP 102

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (183), Expect = 7e-17
 Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 30  ENNGLGISIKGGK------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
              GLG SI GGK           I +S+I +G AA +   L VGD +LS+NG D+ EA 
Sbjct: 16  SERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEAR 75

Query: 84  HDEAVKALKRAGKVVELEV 102
           HD AV  L  A   + L +
Sbjct: 76  HDHAVSLLTAASPTIALLL 94

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.7 bits (196), Expect = 1e-18
 Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 9/98 (9%)

Query: 176 RIIRVKKSENNGLGISIKGGKE---------NKMPILISKIFKGMAADQTEQLYVGDAIL 226
           R + ++K+    LGISI+GG               I ISK+    AA +  +L VG  +L
Sbjct: 11  RELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLL 70

Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
            VN + L   TH EAV+ L+  G  + + V    E  P
Sbjct: 71  EVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFESGP 108

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (174), Expect = 1e-15
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 30  ENNGLGISIKGGKE---------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 80
               LGISI+GG               I ISK+    AA +  +L VG  +L VN + L 
Sbjct: 19  PGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLL 78

Query: 81  EATHDEAVKALKRAGKVVELEVGVGYGR 108
             TH EAV+ L+  G  + + V  G+  
Sbjct: 79  GLTHGEAVQLLRSVGDTLTVLVCDGFES 106

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (195), Expect = 1e-18
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 178 IRVKKSENNGLGISIKGGK------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGE 231
           + ++K + +GLGISI G          K+ I +  + +G AA +  ++ V D I+ V+G 
Sbjct: 6   VELEK-DEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGI 64

Query: 232 DLREATHDEAVKALKRAGKLVELEVK 257
            L   T + A   L+     V   + 
Sbjct: 65  SLVGVTQNFAATVLRNTKGNVRFVIG 90

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.8 bits (194), Expect = 2e-18
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 30  ENNGLGISIKGGK------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
           + +GLGISI G          K+ I +  + +G AA +  ++ V D I+ V+G  L   T
Sbjct: 11  DEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVT 70

Query: 84  HDEAVKALKRAGKVVELEV 102
            + A   L+     V   +
Sbjct: 71  QNFAATVLRNTKGNVRFVI 89

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.8 bits (194), Expect = 2e-18
 Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 2/90 (2%)

Query: 176 RIIRVKKS-ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
           R++ ++++  + GLG SI+GG E+ + I +S +  G  A++   L VGD IL VN + L 
Sbjct: 10  RLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKE-GLRVGDQILRVNDKSLA 68

Query: 235 EATHDEAVKALKRAGKLVELEVKYLREVTP 264
             TH EAVKALK + KLV       R   P
Sbjct: 69  RVTHAEAVKALKGSKKLVLSVYSAGRISGP 98

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (185), Expect = 3e-17
 Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 27  KYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
           +   + GLG SI+GG E+ + I +S +  G  A++   L VGD IL VN + L   TH E
Sbjct: 16  RAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKE-GLRVGDQILRVNDKSLARVTHAE 74

Query: 87  AVKALKRAGKVVELEVGVG 105
           AVKALK + K+V      G
Sbjct: 75  AVKALKGSKKLVLSVYSAG 93

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (192), Expect = 3e-18
 Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 178 IRVKKSENNGLGISIKGGKENKM--PILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           + ++K +   LG+ I       +   ++I+ +  G  A+++ +L +GD I+S+NG  L  
Sbjct: 2   VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 61

Query: 236 ATHDEAVKALKRAGKLVELEVK 257
                    +K       +++ 
Sbjct: 62  LPLSTCQSIIKGLKNQSRVKLN 83

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (180), Expect = 1e-16
 Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 29  TENNGLGISIKGGKENKM--PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
            +   LG+ I       +   ++I+ +  G  A+++ +L +GD I+S+NG  L       
Sbjct: 7   QKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLST 66

Query: 87  AVKALKRAGKVVELEVGV 104
               +K       +++ +
Sbjct: 67  CQSIIKGLKNQSRVKLNI 84

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 77.7 bits (191), Expect = 3e-18
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 2/83 (2%)

Query: 175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
            ++   K S     G S+  G   K  + +  I      D    L   D +L VN    R
Sbjct: 8   HKVTLYKDSGMEDFGFSVADGLLEK-GVYVKNIRPAGPGDLG-GLKPYDRLLQVNHVRTR 65

Query: 235 EATHDEAVKALKRAGKLVELEVK 257
           +      V  +  +G  ++L + 
Sbjct: 66  DFDCCLVVPLIAESGNKLDLVIS 88

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.7 bits (186), Expect = 2e-17
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 26  YKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
           YK +     G S+  G   K  + +  I      D    L   D +L VN    R+    
Sbjct: 13  YKDSGMEDFGFSVADGLLEK-GVYVKNIRPAGPGDLG-GLKPYDRLLQVNHVRTRDFDCC 70

Query: 86  EAVKALKRAGKVVELEV 102
             V  +  +G  ++L +
Sbjct: 71  LVVPLIAESGNKLDLVI 87

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (192), Expect = 4e-18
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           R+  ++K  N G G  + G K  K+   I  +  G  A++   L  GD ++ VNGE++ +
Sbjct: 5   RLCCLEKGPN-GYGFHLHGEK-GKLGQYIRLVEPGSPAEKA-GLLAGDRLVEVNGENVEK 61

Query: 236 ATHDEAVKALKRAGKLVELEV 256
            TH + V  ++ A   V L V
Sbjct: 62  ETHQQVVSRIRAALNAVRLLV 82

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (181), Expect = 9e-17
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
             NG G  + G K  K+   I  +  G  A++   L  GD ++ VNGE++ + TH + V 
Sbjct: 12  GPNGYGFHLHGEK-GKLGQYIRLVEPGSPAEKA-GLLAGDRLVEVNGENVEKETHQQVVS 69

Query: 90  ALKRAGKVVELEV 102
            ++ A   V L V
Sbjct: 70  RIRAALNAVRLLV 82

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.2 bits (192), Expect = 5e-18
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKEN-------KMPILISKIFKGMAADQTEQLYVG 222
           S   Q   + + + EN G G  I              +P  I +I  G  AD+  +L VG
Sbjct: 6   SGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVG 65

Query: 223 DAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
           D IL+VNG+ +    H + VK +K AG  V L +    E+  
Sbjct: 66  DRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEELNS 107

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (178), Expect = 4e-16
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 29  TENNGLGISIKGGKEN-------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 81
            EN G G  I              +P  I +I  G  AD+  +L VGD IL+VNG+ +  
Sbjct: 19  KENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIIN 78

Query: 82  ATHDEAVKALKRAGKVVELEV 102
             H + VK +K AG  V L +
Sbjct: 79  MPHADIVKLIKDAGLSVTLRI 99

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (189), Expect = 7e-18
 Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 5/78 (6%)

Query: 30  ENNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
              GLG SI GG  N+       I I+KI +G AA +  +L +GD +L+VN  +L++  H
Sbjct: 10  GPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRH 69

Query: 85  DEAVKALKRAGKVVELEV 102
           +EAV +LK    +V L+V
Sbjct: 70  EEAVASLKNTSDMVYLKV 87

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (189), Expect = 8e-18
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 6/87 (6%)

Query: 177 IIRVK-KSENNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVGDAILSVNG 230
           I+ V       GLG SI GG  N+       I I+KI +G AA +  +L +GD +L+VN 
Sbjct: 2   IMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNN 61

Query: 231 EDLREATHDEAVKALKRAGKLVELEVK 257
            +L++  H+EAV +LK    +V L+V 
Sbjct: 62  TNLQDVRHEEAVASLKNTSDMVYLKVA 88

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (189), Expect = 1e-17
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 171 VENQKRIIRVKKSENNGLGISIKGGK----ENKMPILISKIFKGMAADQTEQLYVGDAIL 226
           V  +   + +     +G G+ ++GG         P L+  I     A++   L VGD +L
Sbjct: 5   VHTETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVL 64

Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVK 257
           S+NG    + T +EA + L+ A    ++ ++
Sbjct: 65  SINGIATEDGTMEEANQLLRDAALAHKVVLE 95

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.5 bits (188), Expect = 1e-17
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 30  ENNGLGISIKGGK----ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
             +G G+ ++GG         P L+  I     A++   L VGD +LS+NG    + T +
Sbjct: 18  PLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTME 77

Query: 86  EAVKALKRAGKVVELEVGVGY 106
           EA + L+ A    ++ + V +
Sbjct: 78  EANQLLRDAALAHKVVLEVEF 98

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (190), Expect = 1e-17
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 176 RIIRVKKSENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGED 232
             + +++   +GLG+ +  G         + I  +  G  A    +L +GD IL VNG  
Sbjct: 10  FTVELERG-PSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSS 68

Query: 233 LREATHDEAVKALKRAGKLVELEVKYLREVTPYFRK 268
           L    +  AV  ++  GK +   V   +      +K
Sbjct: 69  LLGLGYLRAVDLIRHGGKKMRFLVA--KSDVETAKK 102

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (185), Expect = 4e-17
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 30  ENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
             +GLG+ +  G         + I  +  G  A    +L +GD IL VNG  L    +  
Sbjct: 17  GPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLR 76

Query: 87  AVKALKRAGKVVELEV 102
           AV  ++  GK +   V
Sbjct: 77  AVDLIRHGGKKMRFLV 92

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 77.0 bits (189), Expect = 1e-17
 Identities = 17/95 (17%), Positives = 45/95 (47%), Gaps = 13/95 (13%)

Query: 174 QKRIIRVKKSENNGLGISIKGGK------------ENKMPILISKIFKGMAADQTEQLYV 221
           +++ + ++K ++ G G  ++G K                   +  + +G  A +   L +
Sbjct: 5   KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRA-GLRM 63

Query: 222 GDAILSVNGEDLREATHDEAVKALKRAGKLVELEV 256
           GD ++ VNG+++ +  H + V  +++ G  + ++V
Sbjct: 64  GDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 98

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.0 bits (171), Expect = 3e-15
 Identities = 16/85 (18%), Positives = 38/85 (44%), Gaps = 13/85 (15%)

Query: 30  ENNGLGISIKGGK------------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGE 77
           ++ G G  ++G K                   +  + +G  A +   L +GD ++ VNG+
Sbjct: 15  DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRA-GLRMGDFLIEVNGQ 73

Query: 78  DLREATHDEAVKALKRAGKVVELEV 102
           ++ +  H + V  +++ G  + ++V
Sbjct: 74  NVVKVGHRQVVNMIRQGGNTLMVKV 98

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.0 bits (189), Expect = 2e-17
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 6/113 (5%)

Query: 150 LNSNTVDSIS-SFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGK---ENKMPILIS 205
           LNS+T  + S S    V +  + E     + ++K  + GLG S++GGK       P+ I+
Sbjct: 4   LNSSTDSAASASAASDVSVESTAEATVCTVTLEK-MSAGLGFSLEGGKGSLHGDKPLTIN 62

Query: 206 KIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK-LVELEVK 257
           +IFKG A++Q+E +  GD IL + G  ++  T  EA   +K      V + ++
Sbjct: 63  RIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIR 115

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (169), Expect = 9e-15
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 30  ENNGLGISIKGGK---ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
            + GLG S++GGK       P+ I++IFKG A++Q+E +  GD IL + G  ++  T  E
Sbjct: 38  MSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFE 97

Query: 87  AVKALKRAGK-VVELEV 102
           A   +K      V + +
Sbjct: 98  AWNIIKALPDGPVTIVI 114

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.0 bits (184), Expect = 5e-17
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 174 QKRIIRVKKSENNGLGISIKGGK--------ENKMPILISKIFKGMAADQTEQLYVGDAI 225
           +   + + + ++  LG +I GG+         +   I +SKI     A +   L + D I
Sbjct: 8   KSLTLVLHR-DSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRI 66

Query: 226 LSVNGEDLREATHDEAVKALKRAGKLVELEVK 257
           + VNG DL  ATHD+AV+A K A + + ++V 
Sbjct: 67  IEVNGRDLSRATHDQAVEAFKTAKEPIVVQVL 98

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (182), Expect = 9e-17
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 8/81 (9%)

Query: 30  ENNGLGISIKGGK--------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 81
           ++  LG +I GG+         +   I +SKI     A +   L + D I+ VNG DL  
Sbjct: 17  DSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSR 76

Query: 82  ATHDEAVKALKRAGKVVELEV 102
           ATHD+AV+A K A + + ++V
Sbjct: 77  ATHDQAVEAFKTAKEPIVVQV 97

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.2 bits (182), Expect = 9e-17
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 174 QKRIIRVKKSENNGLGISIKGGKE--------NKMPILISKIFKGMAADQTEQLYVGDAI 225
               + + K  +  LGIS+    +            I +  I    AA+   +++ GD +
Sbjct: 4   DTFEVELAK-TDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRV 62

Query: 226 LSVNGEDLREATHDEAVKALKRAGKLVELEVK 257
           L+VNG  L  ATH +AV+ L+  G++V L ++
Sbjct: 63  LAVNGVSLEGATHKQAVETLRNTGQVVHLLLE 94

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.1 bits (179), Expect = 2e-16
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 8/81 (9%)

Query: 30  ENNGLGISIKGGKE--------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 81
            +  LGIS+    +            I +  I    AA+   +++ GD +L+VNG  L  
Sbjct: 13  TDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG 72

Query: 82  ATHDEAVKALKRAGKVVELEV 102
           ATH +AV+ L+  G+VV L +
Sbjct: 73  ATHKQAVETLRNTGQVVHLLL 93

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.3 bits (182), Expect = 9e-17
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 33  GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
             G  ++GGK+  MP+ IS +  G  A Q   + +GD +LS++G   +  TH EA   +K
Sbjct: 16  PWGFRLQGGKDFNMPLTISSLKDGGKASQA-HVRIGDVVLSIDGISAQGMTHLEAQNKIK 74

Query: 93  RAGKVVELEV 102
                + + +
Sbjct: 75  ACTGSLNMTL 84

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.9 bits (181), Expect = 1e-16
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 187 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 246
             G  ++GGK+  MP+ IS +  G  A Q   + +GD +LS++G   +  TH EA   +K
Sbjct: 16  PWGFRLQGGKDFNMPLTISSLKDGGKASQA-HVRIGDVVLSIDGISAQGMTHLEAQNKIK 74

Query: 247 RAGKLVELEVK 257
                + + ++
Sbjct: 75  ACTGSLNMTLQ 85

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (183), Expect = 1e-16
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 175 KRIIRVKKSENNGLGISIKGGK--ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGED 232
           + +   + +  + LG+++      E+ + I IS+I     A +  ++  GD I+ +NG +
Sbjct: 21  EEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIE 80

Query: 233 LREATHDEAVKALKRA-GKLVELEVK 257
           ++    +EAV  L     K   L + 
Sbjct: 81  VQ--NREEAVALLTSEENKNFSLLIA 104

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (176), Expect = 9e-16
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 26  YKYTENNGLGISIKGGK--ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
           Y+    + LG+++      E+ + I IS+I     A +  ++  GD I+ +NG +++   
Sbjct: 26  YRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--N 83

Query: 84  HDEAVKALKRA-GKVVELEV 102
            +EAV  L     K   L +
Sbjct: 84  REEAVALLTSEENKNFSLLI 103

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (179), Expect = 1e-16
 Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
           I + + ++ G G +I        P+ +  +  G  A++   L   D +L +N   +    
Sbjct: 1   ITIPRGKD-GFGFTICCD----SPVRVQAVDSGGPAERA-GLQQLDTVLQLNERPVEHWK 54

Query: 238 HDEAVKALKRAGKLVELEVK 257
             E    ++     + L V 
Sbjct: 55  CVELAHEIRSCPSEIILLVW 74

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (174), Expect = 5e-16
 Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 31  NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
            +G G +I        P+ +  +  G  A++   L   D +L +N   +      E    
Sbjct: 7   KDGFGFTICCD----SPVRVQAVDSGGPAERA-GLQQLDTVLQLNERPVEHWKCVELAHE 61

Query: 91  LKRAGKVVELEV 102
           ++     + L V
Sbjct: 62  IRSCPSEIILLV 73

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 74.0 bits (181), Expect = 2e-16
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
           +R+ K +  GLG  +K    +K P++IS + +G AA+Q+  +  GD IL+VN   L + +
Sbjct: 5   VRLFKRKVGGLGFLVKER-VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS 63

Query: 238 HDEAVKALKRAGK--LVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDSPP 289
           +D A++ L+       V L ++     T               L+  F  D  P
Sbjct: 64  YDSALEVLRGIASETHVVLILRGPEGFTT-------------HLETTFTGDGTP 104

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.4 bits (164), Expect = 3e-14
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
           +  GLG  +K    +K P++IS + +G AA+Q+  +  GD IL+VN   L + ++D A++
Sbjct: 11  KVGGLGFLVKER-VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALE 69

Query: 90  ALKRAGKVVELEV 102
            L+       + +
Sbjct: 70  VLRGIASETHVVL 82

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.5 bits (180), Expect = 2e-16
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 23  SENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 82
           S N         G  + GG +   P++I++I  G  A     L  GD IL+++G      
Sbjct: 6   SGNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAA-NLCPGDVILAIDGFGTESM 64

Query: 83  THDEAVKALKRAGKVVELEV 102
           TH +A   +K A   + L++
Sbjct: 65  THADAQDRIKAASYQLCLKI 84

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.8 bits (178), Expect = 3e-16
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 180 VKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
           V        G  + GG +   P++I++I  G  A     L  GD IL+++G      TH 
Sbjct: 9   VVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAA-NLCPGDVILAIDGFGTESMTHA 67

Query: 240 EAVKALKRAGKLVELEVK 257
           +A   +K A   + L++ 
Sbjct: 68  DAQDRIKAASYQLCLKID 85

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (177), Expect = 5e-16
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
                 + R ++V+K  +  LGISI  G++    I +SK+  G  A Q   L  GD +L 
Sbjct: 13  DRPYVEEPRHVKVQKG-SEPLGISIVSGEKG--GIYVSKVTVGSIAHQ-AGLEYGDQLLE 68

Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVKY 258
            NG +LR AT  +A   + +    + +  +Y
Sbjct: 69  FNGINLRSATEQQARLIIGQQCDTITILAQY 99

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (162), Expect = 6e-14
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
            +  LGISI  G++    I +SK+  G  A Q   L  GD +L  NG +LR AT  +A  
Sbjct: 28  GSEPLGISIVSGEKG--GIYVSKVTVGSIAHQ-AGLEYGDQLLEFNGINLRSATEQQARL 84

Query: 90  ALKRAGKVVELEV 102
            + +    + +  
Sbjct: 85  IIGQQCDTITILA 97

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (168), Expect = 4e-15
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           R + + K ++  +G+ +K        I +  +     A     L  GD +L +NGE+   
Sbjct: 4   REVILCKDQDGKIGLRLKSIDN---GIFVQLVQANSPASLV-GLRFGDQVLQINGENCAG 59

Query: 236 ATHDEAVKALKRA-GKLVELEVKY 258
            + D+A K LK+A G+ + + ++ 
Sbjct: 60  WSSDKAHKVLKQAFGEKITMTIRD 83

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (148), Expect = 3e-12
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
           ++  +G+ +K        I +  +     A     L  GD +L +NGE+    + D+A K
Sbjct: 12  QDGKIGLRLKSIDN---GIFVQLVQANSPASLV-GLRFGDQVLQINGENCAGWSSDKAHK 67

Query: 90  ALKRA-GKVVELEV 102
            LK+A G+ + + +
Sbjct: 68  VLKQAFGEKITMTI 81

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.9 bits (168), Expect = 1e-14
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 6/109 (5%)

Query: 152 SNTVDSISSFMDTVDIPDSVENQKRIIRVK-KSENNGLGISIKGGKENKMPILISKIFKG 210
           S +  S +          SV +  ++I+ K    N GLG+ +         + IS +   
Sbjct: 3   SGSSGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQNGP---YLQISHLINK 59

Query: 211 MAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK--RAGKLVELEVK 257
            AA     L  GD ++SV   ++   T  E +K L+    G +++++  
Sbjct: 60  GAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAY 108

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.9 bits (155), Expect = 8e-13
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 31  NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
           N GLG+ +         + IS +    AA     L  GD ++SV   ++   T  E +K 
Sbjct: 37  NLGLGLVVIQNGP---YLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKL 93

Query: 91  LK--RAGKVVELEVGVGYG 107
           L+    G V++++   G+ 
Sbjct: 94  LQNITIGTVLQIKAYRGFL 112

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (154), Expect = 3e-13
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 181 KKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 240
           +      LG S++ G        I  + +G  A++   + VG  I+ +NG+ +    H++
Sbjct: 8   RPDLRYQLGFSVQNGI-------ICSLMRGGIAERG-GVRVGHRIIEINGQSVVATPHEK 59

Query: 241 AVKALKRAGKLVELEV 256
            V  L  A   + ++ 
Sbjct: 60  IVHILSNAVGEIHMKT 75

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (153), Expect = 5e-13
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 27  KYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
           +      LG S++ G        I  + +G  A++   + VG  I+ +NG+ +    H++
Sbjct: 8   RPDLRYQLGFSVQNGI-------ICSLMRGGIAERG-GVRVGHRIIEINGQSVVATPHEK 59

Query: 87  AVKALKRAGKVVELEV 102
            V  L  A   + ++ 
Sbjct: 60  IVHILSNAVGEIHMKT 75

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.1 bits (153), Expect = 1e-12
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 12/102 (11%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           R I     E   LG +++G      P+ +  +    +A        GD I+S+ G D + 
Sbjct: 17  RGIHFTVEEG-DLGFTLRGN----TPVQVHFLDPHCSASLA-GAKEGDYIVSIQGVDCKW 70

Query: 236 ATHDEAVKALKRA-GKLVELEVKYLREVTPYFRKASIISEVG 276
            T  E +K LK   G+ VE++V     V+     +S+ ++ G
Sbjct: 71  LTVSEVMKLLKSFGGEEVEMKV-----VSLLDSTSSMHNKSG 107

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.1 bits (140), Expect = 5e-11
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
           E   LG +++G      P+ +  +    +A        GD I+S+ G D +  T  E +K
Sbjct: 24  EEGDLGFTLRGN----TPVQVHFLDPHCSASLA-GAKEGDYIVSIQGVDCKWLTVSEVMK 78

Query: 90  ALKRA-GKVVELEV 102
            LK   G+ VE++V
Sbjct: 79  LLKSFGGEEVEMKV 92

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (146), Expect = 4e-12
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 8/81 (9%)

Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
           R I + K     +G   K          I+ I K  +A +   L     I  +NG+++  
Sbjct: 6   RTITMHKDSTGHVGFIFK-------NGKITSIVKDSSAARNGLL-TEHNICEINGQNVIG 57

Query: 236 ATHDEAVKALKRAGKLVELEV 256
               +    L  +G +V + +
Sbjct: 58  LKDSQIADILSTSGTVVTITI 78

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 7e-10
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 30  ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
               +G   K          I+ I K  +A +   L     I  +NG+++      +   
Sbjct: 14  STGHVGFIFK-------NGKITSIVKDSSAARNGLL-TEHNICEINGQNVIGLKDSQIAD 65

Query: 90  ALKRAGKVVELEV 102
            L  +G VV + +
Sbjct: 66  ILSTSGTVVTITI 78

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (140), Expect = 4e-11
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 11/97 (11%)

Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVN 229
           S + +   + + K    G G +I      +    I              L  GD I+ +N
Sbjct: 6   SGQAELMTLTIVKGAQ-GFGFTIADSPTGQRVKQIL------DIQGCPGLCEGDLIVEIN 58

Query: 230 GEDLREATHDEAVKALK--RAGKLVELEVKYLREVTP 264
            ++++  +H E V  LK    G    L +   R   P
Sbjct: 59  QQNVQNLSHTEVVDILKDCPIGSETSLIIH--RGSGP 93

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (132), Expect = 4e-10
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 31  NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
             G G +I      +    I              L  GD I+ +N ++++  +H E V  
Sbjct: 20  AQGFGFTIADSPTGQRVKQIL------DIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDI 73

Query: 91  LK--RAGKVVELEVGVGYG 107
           LK    G    L +  G G
Sbjct: 74  LKDCPIGSETSLIIHRGSG 92

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

 Score = 47.7 bits (113), Expect = 1e-07
 Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 33  GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
           G+G+ I     +   +++     G  A++      GD I++V+G  ++  +  +    L+
Sbjct: 6   GVGLEITYDGGSGKDVVVLTPAPGGPAEKA-GARAGDVIVTVDGTAVKGMSLYDVSDLLQ 64

Query: 93  -RAGKVVELEV 102
             A   VE+ +
Sbjct: 65  GEADSQVEVVL 75

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 187 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 246
           G+G+ I     +   +++     G  A++      GD I++V+G  ++  +  +    L+
Sbjct: 6   GVGLEITYDGGSGKDVVVLTPAPGGPAEKA-GARAGDVIVTVDGTAVKGMSLYDVSDLLQ 64

Query: 247 -RAGKLVELEVK 257
             A   VE+ + 
Sbjct: 65  GEADSQVEVVLH 76

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 33  GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
            LG+ +   K+      I ++  G AA     +  G  +  V+   +  A    A    K
Sbjct: 4   SLGVQVTNDKDTL-GAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSADALVAAVRSK 61

Query: 93  RAGKVVELEV 102
             G  V L  
Sbjct: 62  APGATVALTF 71

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.4 bits (102), Expect = 5e-06
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 2/71 (2%)

Query: 187 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 246
            LG+ +   K+      I ++  G AA     +  G  +  V+   +  A    A    K
Sbjct: 4   SLGVQVTNDKDTL-GAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSADALVAAVRSK 61

Query: 247 RAGKLVELEVK 257
             G  V L  +
Sbjct: 62  APGATVALTFQ 72

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 13/69 (18%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 34  LGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR 93
           L +      + +  +LI K+  G  A +   L  GD IL++  + ++    ++  +A+ R
Sbjct: 19  LQLREPSFPDVQHGVLIHKVILGSPAHRA-GLRPGDVILAIGEQMVQ--NAEDVYEAV-R 74

Query: 94  AGKVVELEV 102
               + +++
Sbjct: 75  TQSQLAVQI 83

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 13/70 (18%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 188 LGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR 247
           L +      + +  +LI K+  G  A +   L  GD IL++  + ++    ++  +A+ R
Sbjct: 19  LQLREPSFPDVQHGVLIHKVILGSPAHRA-GLRPGDVILAIGEQMVQ--NAEDVYEAV-R 74

Query: 248 AGKLVELEVK 257
               + ++++
Sbjct: 75  TQSQLAVQIR 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	774
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.72
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.7
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.7
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.69
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.67
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.66
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.66
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.66
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.66
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.65
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.65
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.65
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.65
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.64
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.62
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.62
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.62
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.61
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.61
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.61
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.61
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.61
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.6
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.6
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.59
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.59
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.59
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.59
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.59
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.57
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.57
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.57
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.57
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.56
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.56
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.55
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.55
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.55
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.54
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.54
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.53
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.53
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.53
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.52
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.52
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.52
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.51
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.51
d2adza1	105	Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1	99.51
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.51
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.51
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.5
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.5
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.5
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.5
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.49
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.49
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.49
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.47
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.47
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.45
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.44
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.44
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.43
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.43
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.43
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.43
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.42
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.42
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.42
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.41
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.41
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.41
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.41
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.4
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.4
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.4
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.39
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.39
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.38
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.37
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.37
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.37
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.36
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.36
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.36
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.36
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.35
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.35
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.34
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.34
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.33
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.33
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.32
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.31
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.3
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.3
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	99.3
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.3
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.29
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.28
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.27
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.26
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.26
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.25
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.24
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.2
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.12
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.08
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.07
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.06
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	98.93
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	98.75
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	98.74
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	98.69
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.69
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.69
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	98.68
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	98.66
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	98.63
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	98.62
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	98.59
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	98.59
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.57
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	98.57
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.55
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	98.55
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	98.55
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	98.54
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	98.53
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	98.53
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.52
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.52
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	98.51
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	98.49
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	98.48
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	98.48
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	98.42
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	98.4
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	98.4
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	98.4
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.38
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	98.35
d1wi1a_	126	Calcium-dependent activator protein for secretion,	98.31
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	98.31
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	98.31
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	98.28
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	98.28
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	98.26
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	98.25
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	98.21
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	98.21
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	98.2
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	98.2
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	98.2
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	98.18
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	98.17
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.17
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.15
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	98.14
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	98.1
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	97.88
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	96.3
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	94.36
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	94.34
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	94.29
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	93.62
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	92.36
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	92.22
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	91.83
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	91.11
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	90.96
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	90.96
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	90.94
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	90.5
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	90.34
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	90.25
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	89.98
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	89.94
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	89.32
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	89.09
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	88.84
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	88.78
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	88.48
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	88.4
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	88.02
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	87.31
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	86.85
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	85.05
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	84.75
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	84.21
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	83.86
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	81.01
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	80.27

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.2e-17  Score=145.92  Aligned_cols=87  Identities=69%  Similarity=0.940  Sum_probs=82.5

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV   97 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~   97 (774)
                      +.+.++|+|.|++.++|||+|.||.+...+++|++|.|||||+++|.|++||+|++|||+++.+++|++++.+|++++..
T Consensus         2 ~~q~r~V~l~k~~~~~lG~~i~gg~~~~~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~   81 (90)
T d1qava_           2 SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKE   81 (90)
T ss_dssp             CSSCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred             CceEEEEEEEeCCCCccCEEEEccccCCCCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            45678999999999999999999998888999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeee
Q psy4897          98 VELEVGV  104 (774)
Q Consensus        98 V~L~V~R  104 (774)
                      |+|+|.|
T Consensus        82 v~l~v~~   88 (90)
T d1qava_          82 VVLEVKY   88 (90)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999975

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=3.4e-17  Score=143.73  Aligned_cols=86  Identities=45%  Similarity=0.590  Sum_probs=77.8

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCC-----CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA   94 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~-----~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a   94 (774)
                      ++.+|+|.| ++.+|||+|.||.+.+     .++||++|.+||||+++|+|++||+|++|||++|.+++|.+|+.+|+++
T Consensus         1 E~~~V~l~k-~~~glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~   79 (93)
T d1rgra_           1 EYEEITLER-GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA   79 (93)
T ss_dssp             CEEEEEEEC-CSSCCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHT
T ss_pred             CCEEEEEEe-CCCcCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcC
Confidence            457888865 5678999999987643     5899999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEeeecc
Q psy4897          95 GKVVELEVGVGY  106 (774)
Q Consensus        95 g~~V~L~V~R~~  106 (774)
                      +..|+|+|.|..
T Consensus        80 ~~~v~L~v~R~~   91 (93)
T d1rgra_          80 GSIVRLYVMRRK   91 (93)
T ss_dssp             TTEEEEEEECSC
T ss_pred             CCEEEEEEEeCC
Confidence            999999998864

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.4e-17  Score=144.66  Aligned_cols=84  Identities=33%  Similarity=0.486  Sum_probs=75.0

Q ss_pred             cEEEEEEeecCCcccEEEEccCCC---------CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHH
Q psy4897          21 FYSENYKYTENNGLGISIKGGKEN---------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL   91 (774)
Q Consensus        21 ~~~V~l~rk~~~gLGfsI~GG~e~---------~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lL   91 (774)
                      .++|++.|.++.+|||+|+||...         ..|+||++|.|+|||+++|+|++||+|++|||+++.+++|++|+.+|
T Consensus         2 pr~V~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~l   81 (96)
T d2fcfa1           2 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAI   81 (96)
T ss_dssp             CEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CEEEEEEeCCCCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHHH
Confidence            578999999999999999988643         25899999999999999999999999999999999999999999999


Q ss_pred             HhcCceEEEEeee
Q psy4897          92 KRAGKVVELEVGV  104 (774)
Q Consensus        92 k~ag~~V~L~V~R  104 (774)
                      +++++.|+|+|.|
T Consensus        82 k~~~~~v~L~V~r   94 (96)
T d2fcfa1          82 RKAGNPVVFMVQS   94 (96)
T ss_dssp             HTCCSSEEEEEEC
T ss_pred             HcCCCeEEEEEEE
Confidence            9999999999976

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.7e-17  Score=142.11  Aligned_cols=85  Identities=38%  Similarity=0.545  Sum_probs=77.6

Q ss_pred             cEEEEEEeecCCcccEEEEccCCCC-----CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcC
Q psy4897          21 FYSENYKYTENNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG   95 (774)
Q Consensus        21 ~~~V~l~rk~~~gLGfsI~GG~e~~-----~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag   95 (774)
                      +++|+|.|. +.||||+|.||.+..     .++||++|.|+|||+++|+|++||+|++|||+++.+++|.+++.+|++++
T Consensus         2 v~~V~L~k~-~~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~~   80 (92)
T d2fe5a1           2 IMEVNLLKG-PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTS   80 (92)
T ss_dssp             EEEEEEECC-TTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCC
T ss_pred             EEEEEEEEC-CCccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcCC
Confidence            678999875 578999999987542     58999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeeecc
Q psy4897          96 KVVELEVGVGY  106 (774)
Q Consensus        96 ~~V~L~V~R~~  106 (774)
                      +.|+|+|.|++
T Consensus        81 ~~v~L~v~Rpg   91 (92)
T d2fe5a1          81 DMVYLKVAKPG   91 (92)
T ss_dssp             SEEEEEEECCC
T ss_pred             CEEEEEEECCC
Confidence            99999998864

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=5.4e-17  Score=142.73  Aligned_cols=85  Identities=31%  Similarity=0.415  Sum_probs=78.6

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCC------CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENK------MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~------~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      .+++|++.|+++.+|||+|.||.+..      .|+||+.|.|||||+++|+|++||+|++|||+++.+++|.+++.+|++
T Consensus         3 ~i~~V~L~k~~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~   82 (94)
T d1ihja_           3 LIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE   82 (94)
T ss_dssp             EEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EEEEEEEEeCCCCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHc
Confidence            47889999999999999999986543      369999999999999999999999999999999999999999999999


Q ss_pred             cCceEEEEeee
Q psy4897          94 AGKVVELEVGV  104 (774)
Q Consensus        94 ag~~V~L~V~R  104 (774)
                      ++..|+|+|.|
T Consensus        83 ~~~~v~L~V~R   93 (94)
T d1ihja_          83 ADFKIELEIQT   93 (94)
T ss_dssp             SCSEEEEEEEE
T ss_pred             CCCEEEEEEEe
Confidence            99999999976

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.5e-16  Score=139.40  Aligned_cols=86  Identities=33%  Similarity=0.479  Sum_probs=75.5

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCC---CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcC
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENK---MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG   95 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~---~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag   95 (774)
                      .++.+|++.+  ..+|||+|.+|.+..   .|+||++|.|||||+++|+|++||+|++|||+++.+++|++|+.+|++++
T Consensus         3 pei~~v~l~~--~~glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~   80 (92)
T d1t2ma1           3 PEIITVTLKK--QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTS   80 (92)
T ss_dssp             CEEEEEEEEC--SSSCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCC
T ss_pred             CeEEEEEEeC--CCccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcCC
Confidence            3455666644  567999999887643   47999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeeecc
Q psy4897          96 KVVELEVGVGY  106 (774)
Q Consensus        96 ~~V~L~V~R~~  106 (774)
                      ..|+|+|.|.+
T Consensus        81 ~~v~L~v~R~g   91 (92)
T d1t2ma1          81 SVVTLEVAKQG   91 (92)
T ss_dssp             SEEEEEEEECC
T ss_pred             CeEEEEEEeCC
Confidence            99999998864

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8.3e-17  Score=141.62  Aligned_cols=86  Identities=27%  Similarity=0.417  Sum_probs=76.7

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCC------CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~------~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      ++++|+|.|. +++|||+|.|+...      ..++||++|.|||||+++|+|++||+|++|||+++.+++|.+|+.+|++
T Consensus         2 e~~~V~L~k~-~~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~   80 (94)
T d1wf8a1           2 ELFPVELEKD-EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRN   80 (94)
T ss_dssp             EEEEEEEECB-TTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHH
T ss_pred             eEEEEEEEeC-CCCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            5789999764 57899999985421      2479999999999999999999999999999999999999999999999


Q ss_pred             cCceEEEEeeecc
Q psy4897          94 AGKVVELEVGVGY  106 (774)
Q Consensus        94 ag~~V~L~V~R~~  106 (774)
                      ++..|+|+|.|+.
T Consensus        81 ~~~~v~L~V~R~k   93 (94)
T d1wf8a1          81 TKGNVRFVIGREK   93 (94)
T ss_dssp             CCSEEEEEEEEEC
T ss_pred             CCCeEEEEEEeCC
Confidence            9999999998864

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=2e-16  Score=139.50  Aligned_cols=86  Identities=34%  Similarity=0.487  Sum_probs=80.0

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE   99 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~   99 (774)
                      .+++|++.| ++++|||+|.++.+...+++|++|.|+|||+++|+|++||+|++|||++|.+++|.+++.+|++++..|+
T Consensus         3 ~i~tV~l~k-~~~~lG~~i~g~~~~~~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~   81 (95)
T d1n7ea_           3 IIYTVELKR-YGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVT   81 (95)
T ss_dssp             CEEEEEEEC-TTSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred             EEEEEEEEE-CCCcEeEEEEecccCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            578999855 6789999999998888899999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeecc
Q psy4897         100 LEVGVGY  106 (774)
Q Consensus       100 L~V~R~~  106 (774)
                      |+|.|..
T Consensus        82 l~v~r~~   88 (95)
T d1n7ea_          82 LKIKKQT   88 (95)
T ss_dssp             EEEECCC
T ss_pred             EEEEECC
Confidence            9998754

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7.2e-17  Score=139.46  Aligned_cols=82  Identities=32%  Similarity=0.472  Sum_probs=75.4

Q ss_pred             EEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEE
Q psy4897          22 YSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELE  101 (774)
Q Consensus        22 ~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~  101 (774)
                      |+|++  .++++|||+|.||.+...+++|..|.||+||+++| |++||+|++|||+++.+++|++++.+|+++++.|+|+
T Consensus         3 ~~V~l--~~~~~~Gf~i~gg~~~~~~v~V~~v~~gs~A~~~~-L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~~v~L~   79 (85)
T d1rgwa_           3 YSVTL--TGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLT   79 (85)
T ss_dssp             EEEEE--CCSSCCCEEECCCGGGTSCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEE
T ss_pred             EEEEe--cCCCCCCEEEEeecCCCCCEEEEEecCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            56666  45789999999999988899999999999999865 9999999999999999999999999999999999999


Q ss_pred             eeecc
Q psy4897         102 VGVGY  106 (774)
Q Consensus       102 V~R~~  106 (774)
                      |.|..
T Consensus        80 V~R~~   84 (85)
T d1rgwa_          80 LQKSK   84 (85)
T ss_dssp             EESCC
T ss_pred             EEECC
Confidence            98753

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=3.1e-16  Score=139.07  Aligned_cols=88  Identities=32%  Similarity=0.437  Sum_probs=77.8

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCC--------CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHH
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKEN--------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK   89 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~--------~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~   89 (774)
                      ..+.++|+|.|. +++|||+|.++.+.        ..++||++|.|+|||+++|+|++||+|++|||++|.+++|.+|+.
T Consensus         2 pg~~~~V~L~k~-~~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~   80 (99)
T d1ozia_           2 PGDTFEVELAKT-DGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE   80 (99)
T ss_dssp             TTCEEEEEEECC-SSSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHH
T ss_pred             CCCEEEEEEEEC-CCCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHH
Confidence            357899999775 56899999865332        257999999999999999999999999999999999999999999


Q ss_pred             HHHhcCceEEEEeeecc
Q psy4897          90 ALKRAGKVVELEVGVGY  106 (774)
Q Consensus        90 lLk~ag~~V~L~V~R~~  106 (774)
                      +|++++..|+|+|.|..
T Consensus        81 ~lk~~~~~v~L~v~R~~   97 (99)
T d1ozia_          81 TLRNTGQVVHLLLEKGQ   97 (99)
T ss_dssp             HHHHSCSEEEEEEECCC
T ss_pred             HHHCCCCeEEEEEEeCC
Confidence            99999999999998753

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.2e-16  Score=142.15  Aligned_cols=88  Identities=33%  Similarity=0.430  Sum_probs=78.4

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCC--------CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHH
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKEN--------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK   89 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~--------~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~   89 (774)
                      +...++|+|.| ++++|||+|.||.+.        ..++||++|.|++||+++|+|++||+|++|||+++.+++|.+|+.
T Consensus         6 ~g~~~~V~l~k-~~~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~   84 (107)
T d1uhpa_           6 SGKSLTLVLHR-DSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVE   84 (107)
T ss_dssp             SSEEEEEEECC-SSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHH
T ss_pred             CCCEEEEEEEE-CCCccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHH
Confidence            45578888865 567899999998642        358999999999999999999999999999999999999999999


Q ss_pred             HHHhcCceEEEEeeecc
Q psy4897          90 ALKRAGKVVELEVGVGY  106 (774)
Q Consensus        90 lLk~ag~~V~L~V~R~~  106 (774)
                      +|++++..++|+|.|..
T Consensus        85 ~lk~~~~~v~l~v~r~~  101 (107)
T d1uhpa_          85 AFKTAKEPIVVQVLRRT  101 (107)
T ss_dssp             HHHHCCSSEEEEEEECC
T ss_pred             HHHhCCCcEEEEEEECC
Confidence            99999999999998753

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.66  E-value=1.2e-16  Score=140.14  Aligned_cols=85  Identities=28%  Similarity=0.372  Sum_probs=76.6

Q ss_pred             cEEEEEEeecCCcccEEEEccCCCC--CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc---C
Q psy4897          21 FYSENYKYTENNGLGISIKGGKENK--MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA---G   95 (774)
Q Consensus        21 ~~~V~l~rk~~~gLGfsI~GG~e~~--~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a---g   95 (774)
                      +.+|++.+++.++|||+|.||.+..  .++||++|.|||||+++|+|++||+|++|||+++.+++|.+|+.+|+.+   .
T Consensus         2 i~tV~l~k~~~~~lGi~i~gg~~~~~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~   81 (92)
T d2f0aa1           2 IITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKP   81 (92)
T ss_dssp             EEEEEECHHHHCSCCEEEECCCCTTSCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSS
T ss_pred             EEEEEEEeCCCCccCEEEEccCCCCCCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCCC
Confidence            5789998988899999999997653  5899999999999999999999999999999999999999999999875   4


Q ss_pred             ceEEEEeeec
Q psy4897          96 KVVELEVGVG  105 (774)
Q Consensus        96 ~~V~L~V~R~  105 (774)
                      ..|+|+|.|.
T Consensus        82 ~~v~L~V~R~   91 (92)
T d2f0aa1          82 GPIVLTVAKL   91 (92)
T ss_dssp             SCEEEEEECC
T ss_pred             CcEEEEEEeC
Confidence            4689999763

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=4e-16  Score=139.74  Aligned_cols=88  Identities=30%  Similarity=0.408  Sum_probs=80.0

Q ss_pred             cCCCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcC
Q psy4897          16 FSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG   95 (774)
Q Consensus        16 ~~s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag   95 (774)
                      ......++|+|.|.++.+|||+|.||.+...++||..|.++|||+++| |++||+|++|||++|.+++|++|+.+|++++
T Consensus        11 ~~~~~pr~V~l~r~~~~~lGf~i~gg~~~~~gi~V~~V~~~s~A~~~G-L~~GD~Il~VNg~~v~~~~~~ev~~llk~~~   89 (104)
T d1wi2a_          11 LTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTAR   89 (104)
T ss_dssp             CCSSCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHSS
T ss_pred             cccCcCEEEEEEeCCCCCcceEEEccccCCCCEEEEEECCCChhHhcc-cccCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            345567889999988899999999999888899999999999999998 9999999999999999999999999999875


Q ss_pred             ceEEEEeeec
Q psy4897          96 KVVELEVGVG  105 (774)
Q Consensus        96 ~~V~L~V~R~  105 (774)
                       .++|+|.|.
T Consensus        90 -~v~l~V~~~   98 (104)
T d1wi2a_          90 -EISMRVRFF   98 (104)
T ss_dssp             -SEEEEEECC
T ss_pred             -eEEEEEEEC
Confidence             588888654

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.2e-16  Score=142.15  Aligned_cols=90  Identities=24%  Similarity=0.375  Sum_probs=81.6

Q ss_pred             cCCCCcEEEEEEeecCCcccEEEEccCCC-CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy4897          16 FSSRDFYSENYKYTENNGLGISIKGGKEN-KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA   94 (774)
Q Consensus        16 ~~s~~~~~V~l~rk~~~gLGfsI~GG~e~-~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a   94 (774)
                      .+.++++.|.+.|+++++|||+|.||.+. ..+++|.+|.+||||+++|+|++||+|++|||+++.+++|++|+.+|+.+
T Consensus         4 ~~~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~   83 (107)
T d1x6da1           4 KQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQA   83 (107)
T ss_dssp             SSCTTEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHT
T ss_pred             cccCCcEEEEEEcCCCCccCEEEeeccCCCCCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcC
Confidence            35578999999999999999999999875 46899999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEeeec
Q psy4897          95 GKVVELEVGVG  105 (774)
Q Consensus        95 g~~V~L~V~R~  105 (774)
                      +..+.+++.+.
T Consensus        84 ~~~~~l~v~~r   94 (107)
T d1x6da1          84 REPRQAVIVTR   94 (107)
T ss_dssp             TSSSEEEEEEE
T ss_pred             CCCEEEEEEEC
Confidence            88777777553

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=2.6e-16  Score=139.70  Aligned_cols=90  Identities=26%  Similarity=0.412  Sum_probs=82.7

Q ss_pred             cCCCCcEEEEEEeecCCcccEEEEccCCC--CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          16 FSSRDFYSENYKYTENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        16 ~~s~~~~~V~l~rk~~~gLGfsI~GG~e~--~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      ..+...++|++.|+++.+|||+|.++.+.  +.+++|+.|.|||||+++|+|++||+|++|||+++.+++|.+++.+|++
T Consensus         6 ~p~~~~~~V~l~k~~~~~lG~~v~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~   85 (99)
T d1p1da2           6 IPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQ   85 (99)
T ss_dssp             BCCSSCEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHH
T ss_pred             cCCCCcEEEEEEECCCCccCEEEEecCCCCCCCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHc
Confidence            45567899999999999999999987654  3579999999999999999999999999999999999999999999999


Q ss_pred             cCceEEEEeeec
Q psy4897          94 AGKVVELEVGVG  105 (774)
Q Consensus        94 ag~~V~L~V~R~  105 (774)
                      +++.|+|+|.|+
T Consensus        86 ~~~~v~L~V~r~   97 (99)
T d1p1da2          86 CEDLVKLKIRKD   97 (99)
T ss_dssp             CTTCEEEEEECC
T ss_pred             CCCeEEEEEEeC
Confidence            999999999875

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.5e-17  Score=146.63  Aligned_cols=89  Identities=33%  Similarity=0.420  Sum_probs=81.5

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCC---------CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHH
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKEN---------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV   88 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~---------~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV   88 (774)
                      ...+++|+|.|+++.+|||+|+||.+.         ..++||.+|.|+|||+++|+|++||+|++|||++|.+++|++|+
T Consensus         7 g~~~~~V~l~k~~~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~   86 (111)
T d1ujua_           7 GPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAV   86 (111)
T ss_dssp             SCSSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHH
T ss_pred             CCCeEEEEEEeCCCCccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHH
Confidence            456788999999999999999998753         25899999999999999999999999999999999999999999


Q ss_pred             HHHHhcCceEEEEeeecc
Q psy4897          89 KALKRAGKVVELEVGVGY  106 (774)
Q Consensus        89 ~lLk~ag~~V~L~V~R~~  106 (774)
                      .+|+++++.|+|+|.|..
T Consensus        87 ~~lk~~~~~v~L~V~r~~  104 (111)
T d1ujua_          87 QLLRSVGDTLTVLVCDGF  104 (111)
T ss_dssp             HHHSSCSSEEEECCCCCC
T ss_pred             HHHHcCCCeEEEEEEECC
Confidence            999999999999998764

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.4e-16  Score=140.75  Aligned_cols=89  Identities=26%  Similarity=0.372  Sum_probs=80.2

Q ss_pred             CCCCcEEEEEEeecCCcccEEEEccCCCC---CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          17 SSRDFYSENYKYTENNGLGISIKGGKENK---MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        17 ~s~~~~~V~l~rk~~~gLGfsI~GG~e~~---~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      .+.++++|+|.|.. .+|||+|.+|.+..   .++||..|.|+|||+++|+|++||+|++|||+++.+++|.+|+.+|++
T Consensus         5 ~~g~~~~V~l~k~~-~glG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~   83 (110)
T d1um1a_           5 SSGYVFTVELERGP-SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRH   83 (110)
T ss_dssp             SCCCEEEEEEECCT-TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHT
T ss_pred             CCCCEEEEEEEECC-CCCCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            45678999997765 57999999987643   479999999999999999999999999999999999999999999999


Q ss_pred             cCceEEEEeeecc
Q psy4897          94 AGKVVELEVGVGY  106 (774)
Q Consensus        94 ag~~V~L~V~R~~  106 (774)
                      ++..|+|+|.|..
T Consensus        84 ~~~~v~l~v~r~~   96 (110)
T d1um1a_          84 GGKKMRFLVAKSD   96 (110)
T ss_dssp             CCSEEEEEEECCC
T ss_pred             CCCeEEEEEEeCC
Confidence            9999999998753

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.4e-15  Score=137.63  Aligned_cols=84  Identities=27%  Similarity=0.394  Sum_probs=76.0

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE   99 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~   99 (774)
                      ++++|++.|++.++|||+|.++.+ ..++||+.|.+||||+++|.|++||+|++|||+++.+++|.+++.+|+.++..+.
T Consensus         1 ~i~~V~l~k~~~~glG~~i~~~~~-~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~~~   79 (112)
T d1qaua_           1 NVISVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETH   79 (112)
T ss_dssp             CEEEEEEECBTTTBTSEEEEECSS-SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSE
T ss_pred             CeEEEEEEECCCCcEeEEEEeecC-CCCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCCcE
Confidence            578999999999999999998865 4689999999999999999999999999999999999999999999999877666


Q ss_pred             EEeee
Q psy4897         100 LEVGV  104 (774)
Q Consensus       100 L~V~R  104 (774)
                      +.+.+
T Consensus        80 ~~l~~   84 (112)
T d1qaua_          80 VVLIL   84 (112)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            65544

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1e-15  Score=142.06  Aligned_cols=89  Identities=34%  Similarity=0.458  Sum_probs=81.0

Q ss_pred             ccCCCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy4897          15 FFSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA   94 (774)
Q Consensus        15 ~~~s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a   94 (774)
                      .....+.++|++.+.++.+|||+|.||.+...|+||+.|.||+||+++| |++||+||+|||++|.+++|.+|+++|+.+
T Consensus        15 ~~~~~~~~~v~l~~~~~~~lGf~i~gg~~~~~gv~V~~V~~g~~A~~~g-L~~GD~Il~INg~~v~~~s~~evv~~lr~~   93 (128)
T d1uf1a_          15 LLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS   93 (128)
T ss_dssp             CCCCSSEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC
T ss_pred             ecCCCCeEEEEEEECCCCccCEEEEeeccCCCCEEEEEECCCChHHhcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            3456677899999999999999999999988999999999999999998 999999999999999999999999999887


Q ss_pred             CceEEEEeeec
Q psy4897          95 GKVVELEVGVG  105 (774)
Q Consensus        95 g~~V~L~V~R~  105 (774)
                      + .+.|+|.+.
T Consensus        94 ~-~v~l~v~~~  103 (128)
T d1uf1a_          94 R-HLILTVKDV  103 (128)
T ss_dssp             S-EEEEEEECC
T ss_pred             C-cEEEEEEEC
Confidence            5 688888654

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.4e-16  Score=138.65  Aligned_cols=82  Identities=22%  Similarity=0.414  Sum_probs=76.1

Q ss_pred             EEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEee
Q psy4897          24 ENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVG  103 (774)
Q Consensus        24 V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~  103 (774)
                      +++.++++.+|||+|.||.+...+++|..|.|++||+++| |++||+|++|||++|.+++|.+|+.+|++++..|+|+|.
T Consensus         8 ~tv~~~g~~~~Gf~i~gg~d~~~~i~V~~v~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~   86 (94)
T d1vb7a_           8 LTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLD   86 (94)
T ss_dssp             EEEEECSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEE
T ss_pred             EEEEEECCCcCCEEEEeeccCCCCEEEEeccCCChhhhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence            4556678899999999999988899999999999999976 999999999999999999999999999999999999998


Q ss_pred             ecc
Q psy4897         104 VGY  106 (774)
Q Consensus       104 R~~  106 (774)
                      |..
T Consensus        87 R~~   89 (94)
T d1vb7a_          87 RSS   89 (94)
T ss_dssp             CCC
T ss_pred             ECC
Confidence            854

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.6e-15  Score=135.54  Aligned_cols=84  Identities=19%  Similarity=0.357  Sum_probs=76.8

Q ss_pred             cEEEEEEeecCCcccEEEEccCCCC------------CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHH
Q psy4897          21 FYSENYKYTENNGLGISIKGGKENK------------MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV   88 (774)
Q Consensus        21 ~~~V~l~rk~~~gLGfsI~GG~e~~------------~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV   88 (774)
                      -++|.+.|+++++|||+|.|+....            .+++|..|.|||||+++| |++||+|++|||++|.+++|.+++
T Consensus         6 ~~tV~l~r~~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aG-L~~GD~Il~INg~~v~~~~h~evv   84 (104)
T d1q3oa_           6 EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVV   84 (104)
T ss_dssp             EEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHH
T ss_pred             eEEEEEEECCCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEcCeEcCCCCHHHHH
Confidence            4678999999999999999886532            368999999999999998 999999999999999999999999


Q ss_pred             HHHHhcCceEEEEeeec
Q psy4897          89 KALKRAGKVVELEVGVG  105 (774)
Q Consensus        89 ~lLk~ag~~V~L~V~R~  105 (774)
                      .++++++..|+|+|.+.
T Consensus        85 ~~ik~~~~~v~L~V~~~  101 (104)
T d1q3oa_          85 NMIRQGGNTLMVKVVMV  101 (104)
T ss_dssp             HHHHHTTTEEEEEEEEE
T ss_pred             HHHHcCCCeEEEEEEec
Confidence            99999999999999764

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.4e-16  Score=133.86  Aligned_cols=83  Identities=39%  Similarity=0.540  Sum_probs=74.9

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCC---CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCc
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENK---MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK   96 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~---~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~   96 (774)
                      ++++|++.| ++++|||+|.+|.+..   .+++|.+|.++|||+++|.|++||+|++|||+++.+++|.+++.+|+++++
T Consensus         2 ~~~~V~l~K-~~~~lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~   80 (88)
T d2fnea1           2 QCKSITLER-GPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKG   80 (88)
T ss_dssp             EEEEEEECC-BTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             eEEEEEEEe-CCCccCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            467888865 5578999999887653   479999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEee
Q psy4897          97 VVELEVG  103 (774)
Q Consensus        97 ~V~L~V~  103 (774)
                      .|+|+|.
T Consensus        81 ~v~L~Vl   87 (88)
T d2fnea1          81 TVTLMVL   87 (88)
T ss_dssp             SEEEEEE
T ss_pred             cEEEEEE
Confidence            9999885

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.7e-15  Score=132.34  Aligned_cols=85  Identities=16%  Similarity=0.175  Sum_probs=77.7

Q ss_pred             CCcEEEEEEeecC-CcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce
Q psy4897          19 RDFYSENYKYTEN-NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV   97 (774)
Q Consensus        19 ~~~~~V~l~rk~~-~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~   97 (774)
                      .++++|+|.|... ++|||+|.+|... .|++|..|.++|||+++| |++||+|++|||+++.+++|.+++.+|+++++.
T Consensus         5 ~e~~~v~l~k~~~~~~~Gf~i~~~~~~-~g~~V~~V~~~g~A~~~g-L~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~   82 (91)
T d1m5za_           5 VELHKVTLYKDSGMEDFGFSVADGLLE-KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNK   82 (91)
T ss_dssp             CEEEEEEEECCTTCSSSSEEEEECTTS-SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTSTTE
T ss_pred             CceEEEEEEECCCCCceeEEEeccCCC-CCEEEEEECCCChhHhCc-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE
Confidence            3678899998774 6899999988654 589999999999999998 999999999999999999999999999999999


Q ss_pred             EEEEeeec
Q psy4897          98 VELEVGVG  105 (774)
Q Consensus        98 V~L~V~R~  105 (774)
                      |+|+|.|+
T Consensus        83 v~L~v~R~   90 (91)
T d1m5za_          83 LDLVISRN   90 (91)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEC
Confidence            99999875

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.2e-15  Score=138.67  Aligned_cols=88  Identities=32%  Similarity=0.432  Sum_probs=80.7

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCC-------CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHH
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENK-------MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL   91 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~-------~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lL   91 (774)
                      -+.++|+|.|+++++|||+|.+|.+..       .++||.+|.||+||+++|.|++||+|++|||++|.+++|.+++.+|
T Consensus         9 ~~~~~V~l~r~~~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll   88 (114)
T d1uewa_           9 LQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLI   88 (114)
T ss_dssp             CCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHH
T ss_pred             ceeEEEEEEeCCCCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHH
Confidence            367889999999999999999987643       4699999999999999999999999999999999999999999999


Q ss_pred             HhcCceEEEEeeecc
Q psy4897          92 KRAGKVVELEVGVGY  106 (774)
Q Consensus        92 k~ag~~V~L~V~R~~  106 (774)
                      ++++..|+|+|.|..
T Consensus        89 ~~~~~~v~l~V~r~~  103 (114)
T d1uewa_          89 KDAGLSVTLRIIPQE  103 (114)
T ss_dssp             HHTTTEEEEEECCCS
T ss_pred             HcCCCeEEEEEEeCC
Confidence            999999999998754

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.7e-15  Score=135.22  Aligned_cols=86  Identities=41%  Similarity=0.525  Sum_probs=78.0

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV   98 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V   98 (774)
                      .+.+.|++.| ++++|||+|++|.+ ..|+||..|.|||||+++|.|++||+|++|||++|.+++|++|+.+|+++++.+
T Consensus         8 ~~~r~V~l~k-~~~glG~~i~~~~~-~~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v   85 (102)
T d1tp5a1           8 REPRRIVIHR-GSTGLGFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTV   85 (102)
T ss_dssp             CSCEEEEEEC-TTSCCCEEEEECGG-GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEE
T ss_pred             CCCEEEEEEe-CCCcccEEEEeccC-CCCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCCCeE
Confidence            3568999876 56799999998865 468999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeecc
Q psy4897          99 ELEVGVGY  106 (774)
Q Consensus        99 ~L~V~R~~  106 (774)
                      +|+|.|..
T Consensus        86 ~L~v~~~~   93 (102)
T d1tp5a1          86 TIIAQYKP   93 (102)
T ss_dssp             EEEEEECH
T ss_pred             EEEEEECC
Confidence            99998754

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.5e-15  Score=132.76  Aligned_cols=84  Identities=38%  Similarity=0.522  Sum_probs=75.1

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCC------CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~------~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      +.++|++.+ ..++|||+|.||.+.      ..++||+.|.|||||+++| |++||+|++|||+++.+++|.+++.+|++
T Consensus         8 ~~~~v~l~k-~~~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~   85 (97)
T d1x5qa1           8 EELTLTILR-QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRG   85 (97)
T ss_dssp             EEEEEEEEC-SSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHS
T ss_pred             eEEEEEEEe-CCCeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhc-ccCCCEEEEECCEECCCCCHHHHHHHHhC
Confidence            446777766 567899999988754      3579999999999999998 99999999999999999999999999999


Q ss_pred             cCceEEEEeeec
Q psy4897          94 AGKVVELEVGVG  105 (774)
Q Consensus        94 ag~~V~L~V~R~  105 (774)
                      ++..|+|+|.|+
T Consensus        86 ~~~~v~l~v~R~   97 (97)
T d1x5qa1          86 AGTAVQMRVWRE   97 (97)
T ss_dssp             CCSEEEEEEEEC
T ss_pred             CCCEEEEEEEEC
Confidence            999999999874

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2e-15  Score=129.45  Aligned_cols=78  Identities=21%  Similarity=0.308  Sum_probs=72.9

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV   97 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~   97 (774)
                      ..+.++|++.|...++|||+|.+|       +|++|.+||||+++| |++||+|++|||+++.+++|++++.+|++++..
T Consensus         2 ~~~pr~V~l~k~~~g~~Gf~i~~g-------~V~~v~~g~~A~~~G-l~~GD~Il~INg~~v~~~t~~~~~~ll~~~~~~   73 (82)
T d1r6ja_           2 AMDPRTITMHKDSTGHVGFIFKNG-------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTV   73 (82)
T ss_dssp             TTCCEEEEEECCTTSCCCEEEETT-------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSE
T ss_pred             CCCCEEEEEEeCCCCCcCEEEEEE-------EEEEECCCChHHhcC-cCCCCEEEEeCCeEEeeCCHHHHHHHHHcCCCE
Confidence            357889999998888999999865       599999999999998 999999999999999999999999999999999


Q ss_pred             EEEEee
Q psy4897          98 VELEVG  103 (774)
Q Consensus        98 V~L~V~  103 (774)
                      |+|+|.
T Consensus        74 v~l~v~   79 (82)
T d1r6ja_          74 VTITIM   79 (82)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999985

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.1e-16  Score=139.46  Aligned_cols=88  Identities=31%  Similarity=0.571  Sum_probs=81.6

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV   97 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~   97 (774)
                      ..+.++|++.| +..+|||+|.||.+.+.+++|..|.+++||+++|.|++||+|++|||+++.+++|.+++.+|+.++..
T Consensus         9 ~~e~~~v~l~k-~~~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~~~   87 (103)
T d1wfva_           9 DFDYFTVDMEK-GAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRR   87 (103)
T ss_dssp             CSCCEECCEEC-CTTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSE
T ss_pred             CceEEEEEEEe-CCCccCEEEEeeccCCCCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCE
Confidence            45788899976 55689999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeecc
Q psy4897          98 VELEVGVGY  106 (774)
Q Consensus        98 V~L~V~R~~  106 (774)
                      |+|+|.|..
T Consensus        88 v~l~v~R~~   96 (103)
T d1wfva_          88 VRLLLKRGT   96 (103)
T ss_dssp             ECEEEECTT
T ss_pred             EEEEEEECC
Confidence            999998864

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.4e-15  Score=137.37  Aligned_cols=93  Identities=25%  Similarity=0.233  Sum_probs=84.3

Q ss_pred             cccCCCCcEEEEEEeecCCcccEEEEccCCCC-CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHH
Q psy4897          14 FFFSSRDFYSENYKYTENNGLGISIKGGKENK-MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK   92 (774)
Q Consensus        14 ~~~~s~~~~~V~l~rk~~~gLGfsI~GG~e~~-~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk   92 (774)
                      ...+....+.|.+.|.++.+|||+|.++.+.+ .++||..|.|+++|+++|+|++||+|++|||++|.+++|++++.+|+
T Consensus         9 ~~~~~~~p~~V~l~k~~~~~lGi~i~~~~~~~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~   88 (117)
T d1v62a_           9 TVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLA   88 (117)
T ss_dssp             SSCCSSSSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHH
T ss_pred             ccccCCCCEEEEEEcCCCCCcCEEEEeeccCCCCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHH
Confidence            34666778889999998999999999987654 57999999999999999999999999999999999999999999999


Q ss_pred             hcCceEEEEeeecc
Q psy4897          93 RAGKVVELEVGVGY  106 (774)
Q Consensus        93 ~ag~~V~L~V~R~~  106 (774)
                      +++..|+|+|.+..
T Consensus        89 ~~~~~v~l~v~~~~  102 (117)
T d1v62a_          89 SISEKVRLEILPVP  102 (117)
T ss_dssp             SCSSEEEEEECCBT
T ss_pred             cCCCcEEEEEEECC
Confidence            99999999997654

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.1e-15  Score=133.70  Aligned_cols=85  Identities=26%  Similarity=0.311  Sum_probs=75.6

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCC--------CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHH
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKEN--------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL   91 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~--------~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lL   91 (774)
                      ...+|.+.++.+.+|||+|.||.+.        ..|+||++|.|+|||++  .|++||+|++|||+++.+++|.+|+.+|
T Consensus         9 ~~~~v~v~~~~~~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~--~L~~GD~Il~VNg~~v~~~t~~eav~~l   86 (103)
T d2h3la1           9 AKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLL   86 (103)
T ss_dssp             EEEEEEEEEECSSSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTT--TCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             ccEEEEEEEccCCCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHh--ccCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            3456777778888999999999753        25899999999999986  5999999999999999999999999999


Q ss_pred             HhcCceEEEEeeecc
Q psy4897          92 KRAGKVVELEVGVGY  106 (774)
Q Consensus        92 k~ag~~V~L~V~R~~  106 (774)
                      +++++.++|.|.|+.
T Consensus        87 ~~~~~~v~L~V~R~~  101 (103)
T d2h3la1          87 KTFQNTVELIIVREV  101 (103)
T ss_dssp             HHCCSEEEEEEEEEE
T ss_pred             HhCCCeEEEEEEEEC
Confidence            999999999998863

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.7e-15  Score=135.78  Aligned_cols=87  Identities=37%  Similarity=0.495  Sum_probs=76.1

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCC------CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHH
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK   92 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~------~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk   92 (774)
                      ...+.|.+. +++.+|||+|.||.+.      ..++||.+|.|+|||+++|.|++||+|++|||++|.+++|.+|+.+|+
T Consensus         6 ~~~~~v~l~-k~~~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~   84 (105)
T d1whaa_           6 SGRHVACLA-RSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLT   84 (105)
T ss_dssp             CEEEEEEEC-CCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHT
T ss_pred             CCCEEEEEE-ECCCccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHH
Confidence            344556664 4567799999998753      358999999999999999999999999999999999999999999999


Q ss_pred             hcCceEEEEeeecc
Q psy4897          93 RAGKVVELEVGVGY  106 (774)
Q Consensus        93 ~ag~~V~L~V~R~~  106 (774)
                      +++..|+|+|.|..
T Consensus        85 ~~~~~v~l~v~R~~   98 (105)
T d1whaa_          85 AASPTIALLLEREA   98 (105)
T ss_dssp             SCCSCEEEEEEECC
T ss_pred             cCCCeEEEEEEECC
Confidence            99999999998864

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.1e-15  Score=142.20  Aligned_cols=88  Identities=30%  Similarity=0.459  Sum_probs=77.2

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCC---CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA   94 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~---~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a   94 (774)
                      ...+++|+|.| ++++|||+|+||.+.   ..++||++|.|||||+++|+|++||+||+|||+++.+++|.+|+++|+.+
T Consensus        27 ~~~~~~V~l~k-~~~glG~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~  105 (130)
T d1i16a_          27 EATVCTVTLEK-MSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL  105 (130)
T ss_dssp             SEEEEEEEEET-TSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTS
T ss_pred             CCeEEEEEEEe-CCCccCEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcC
Confidence            34567788765 567899999999764   36899999999999999999999999999999999999999999999997


Q ss_pred             Cc-eEEEEeeecc
Q psy4897          95 GK-VVELEVGVGY  106 (774)
Q Consensus        95 g~-~V~L~V~R~~  106 (774)
                      +. .|+|+|.|..
T Consensus       106 ~~~~v~l~v~r~~  118 (130)
T d1i16a_         106 PDGPVTIVIRRKS  118 (130)
T ss_dssp             CSSEEEEEEEEES
T ss_pred             CCCeEEEEEEcCC
Confidence            55 8999998865

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.6e-15  Score=135.56  Aligned_cols=84  Identities=27%  Similarity=0.402  Sum_probs=74.6

Q ss_pred             EEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcC--ceEE
Q psy4897          22 YSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG--KVVE   99 (774)
Q Consensus        22 ~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag--~~V~   99 (774)
                      ++|++.| ...+|||+|.||.+...+++|..|.|++||+++|+|++||+|++|||++|.+++|.+|+++|++++  ..|+
T Consensus        11 ~~V~l~k-~~~glG~~i~gg~~~~~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~~v~   89 (103)
T d1uepa_          11 LDVHLRR-MESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVN   89 (103)
T ss_dssp             ECCEEES-SSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEE
T ss_pred             EEEEEEe-CCceEeEEEEecccCCCcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEE
Confidence            4566654 567899999999888889999999999999999999999999999999999999999999999874  4788


Q ss_pred             EEeeecc
Q psy4897         100 LEVGVGY  106 (774)
Q Consensus       100 L~V~R~~  106 (774)
                      |+|.|..
T Consensus        90 l~v~r~~   96 (103)
T d1uepa_          90 LTVRRKV   96 (103)
T ss_dssp             EEEEEEC
T ss_pred             EEEEeCC
Confidence            8887753

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=9.8e-16  Score=137.65  Aligned_cols=89  Identities=31%  Similarity=0.510  Sum_probs=79.3

Q ss_pred             CCCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhh-CCCCCCCEEEEECCEecCCCCHHHHHHHHHhcC
Q psy4897          17 SSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQT-EQLYVGDAILSVNGEDLREATHDEAVKALKRAG   95 (774)
Q Consensus        17 ~s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAara-G~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag   95 (774)
                      ...++.+|.+.+.+.++|||+|.||.+...++||++|.|||||+++ |+|++||+|++|||+++.+++|.+|+.+|++++
T Consensus         5 P~~~~~~v~l~~~~~g~lG~~l~gg~d~~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~   84 (106)
T d2cs5a1           5 PHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASC   84 (106)
T ss_dssp             CSSCCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEEEeCCCCCccEEEEeeecCCCCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            4567889999898999999999999988889999999999999984 779999999999999999999999999999864


Q ss_pred             c----eEEEEeeec
Q psy4897          96 K----VVELEVGVG  105 (774)
Q Consensus        96 ~----~V~L~V~R~  105 (774)
                      .    .|.|+|.+.
T Consensus        85 ~~~~~~v~L~vrp~   98 (106)
T d2cs5a1          85 ERHSGELMLLVRPN   98 (106)
T ss_dssp             HCCSSCEEEEEECC
T ss_pred             CCCCcEEEEEECCC
Confidence            3    577777654

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.5e-15  Score=129.58  Aligned_cols=82  Identities=18%  Similarity=0.298  Sum_probs=75.7

Q ss_pred             cEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEE
Q psy4897          21 FYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVEL  100 (774)
Q Consensus        21 ~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L  100 (774)
                      .+.|.+.|.++++|||+|.++.+  .+++|+.|.|||||+++|.|++||+|++|||++|.+++|.+++.+|++++..|+|
T Consensus         2 ~R~V~l~k~~~~~lG~~l~~~~~--~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~L   79 (88)
T d1kwaa_           2 SRLVQFQKNTDEPMGITLKMNEL--NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITF   79 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSCG--GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEE
T ss_pred             cEEEEEEeCCCCCccEEEEEcCC--CCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCCCcEEE
Confidence            36789999999999999997643  4799999999999999999999999999999999999999999999999999999


Q ss_pred             Eeee
Q psy4897         101 EVGV  104 (774)
Q Consensus       101 ~V~R  104 (774)
                      +|..
T Consensus        80 ~i~p   83 (88)
T d1kwaa_          80 KIVP   83 (88)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9863

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.3e-15  Score=128.20  Aligned_cols=80  Identities=21%  Similarity=0.322  Sum_probs=69.7

Q ss_pred             EEEEEeecCCcccEEEEccCCC--CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce--E
Q psy4897          23 SENYKYTENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV--V   98 (774)
Q Consensus        23 ~V~l~rk~~~gLGfsI~GG~e~--~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~--V   98 (774)
                      +|.+.|+++.+|||+|.+|...  ..++||.+|.|||||+++|+|++||+|++|||+++.+++|.+++.+|++++..  +
T Consensus         1 eV~l~k~~g~~LGi~i~~~~~~~~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~v   80 (85)
T d1x45a1           1 DVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRV   80 (85)
T ss_dssp             EEEEECCTTSCCCEEEECCTTTSSSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEE
T ss_pred             CeEEEeCCCCccCEEEEeCCCCCCCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEE
Confidence            5789999999999999854332  35799999999999999999999999999999999999999999999988664  4


Q ss_pred             EEEe
Q psy4897          99 ELEV  102 (774)
Q Consensus        99 ~L~V  102 (774)
                      +|.|
T Consensus        81 ~L~V   84 (85)
T d1x45a1          81 KLNI   84 (85)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4444

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=3.4e-15  Score=130.20  Aligned_cols=86  Identities=76%  Similarity=1.112  Sum_probs=80.8

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      +.++|++.+.+.++|||++.++.+...+++|+.|.|++||+++|.|++||+|++|||+++.+++|++++++|++++..++
T Consensus         4 q~r~V~l~k~~~~~lG~~i~gg~~~~~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~   83 (90)
T d1qava_           4 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV   83 (90)
T ss_dssp             SCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred             eEEEEEEEeCCCCccCEEEEccccCCCCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            46889999988889999999887778899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEe
Q psy4897         254 LEVKYL  259 (774)
Q Consensus       254 L~V~R~  259 (774)
                      |+|+|.
T Consensus        84 l~v~~~   89 (90)
T d1qava_          84 LEVKYM   89 (90)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999875

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7e-15  Score=128.44  Aligned_cols=83  Identities=28%  Similarity=0.351  Sum_probs=73.8

Q ss_pred             cEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEE
Q psy4897          21 FYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVEL  100 (774)
Q Consensus        21 ~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L  100 (774)
                      .+.|+|.|. ..+|||+|.++.. ..+++|..|.|||||+++| |++||+|++|||++|.+++|.+++.+|+.+++.++|
T Consensus         4 Pr~v~l~k~-~~g~Gf~i~~~~~-~~~~~V~~V~~g~~A~~aG-l~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~~~v~L   80 (91)
T d1g9oa_           4 PRLCCLEKG-PNGYGFHLHGEKG-KLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRL   80 (91)
T ss_dssp             CEEEEEECB-TTBCCEEEEECTT-CSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEE
T ss_pred             CEEEEEEEC-CCeeeEEEEecCC-CCCEEEEEEcCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            456777665 5679999998754 4689999999999999998 999999999999999999999999999999999999


Q ss_pred             Eeeecc
Q psy4897         101 EVGVGY  106 (774)
Q Consensus       101 ~V~R~~  106 (774)
                      +|.+..
T Consensus        81 ~v~~~~   86 (91)
T d1g9oa_          81 LVVDPE   86 (91)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            997643

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=4.4e-15  Score=131.50  Aligned_cols=84  Identities=23%  Similarity=0.293  Sum_probs=74.7

Q ss_pred             cEEEEEEeec-CCcccEEEEccCCC---------CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHH
Q psy4897          21 FYSENYKYTE-NNGLGISIKGGKEN---------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA   90 (774)
Q Consensus        21 ~~~V~l~rk~-~~gLGfsI~GG~e~---------~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~l   90 (774)
                      .+.|.+.++. ..+|||+|.+|.+.         ..|+||++|.|||||+++|.|++||+|++|||++|.+++|.+++.+
T Consensus         3 ~r~V~L~k~~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~   82 (98)
T d1rzxa_           3 HRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDM   82 (98)
T ss_dssp             CEEEEEECCCSSSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             cEEEEEEECCCCCcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHH
Confidence            4578888875 46899999988642         2479999999999999999999999999999999999999999999


Q ss_pred             HHhcCceEEEEeee
Q psy4897          91 LKRAGKVVELEVGV  104 (774)
Q Consensus        91 Lk~ag~~V~L~V~R  104 (774)
                      |++++..|+|+|..
T Consensus        83 l~~~~~~v~l~v~p   96 (98)
T d1rzxa_          83 MVANSSNLIITVKP   96 (98)
T ss_dssp             HHHTCTEEEEEEEC
T ss_pred             HHcCCCeEEEEEEe
Confidence            99999999999853

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=3.6e-15  Score=133.39  Aligned_cols=85  Identities=29%  Similarity=0.533  Sum_probs=77.3

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCC------CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENK------MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~------~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      +.++|++.|.++++|||+|.||.+..      .++||.+|.|||||+ + +|++||+|++|||+++.+++|.+|+.+|++
T Consensus         7 e~~tV~l~k~~~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~-~-~L~~GD~Il~INg~~v~~~~~~ev~~ll~~   84 (104)
T d2csja1           7 EQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-G-LLQENDRVVMVNGTPMEDVLHSFAVQQLRK   84 (104)
T ss_dssp             EEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-H-HBCTTCEEEEESSCBCBTCCHHHHHHHHHH
T ss_pred             ccEEEEEEeCCCCCcCEEEEcccCCCccccCCCCEEEEEECCCChhh-c-CCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            56889999999999999999987642      579999999999997 3 499999999999999999999999999999


Q ss_pred             cCceEEEEeeecc
Q psy4897          94 AGKVVELEVGVGY  106 (774)
Q Consensus        94 ag~~V~L~V~R~~  106 (774)
                      ++..++|+|.|..
T Consensus        85 ~~~~v~l~V~R~~   97 (104)
T d2csja1          85 SGKIAAIVVKRPR   97 (104)
T ss_dssp             SCSEEEEEEEEEE
T ss_pred             CCCEEEEEEEeCC
Confidence            9999999998864

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.7e-14  Score=132.80  Aligned_cols=87  Identities=29%  Similarity=0.432  Sum_probs=78.7

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc--Cc
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GK   96 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a--g~   96 (774)
                      .++++|++.+ +..+|||+|.+|.+...+++|+.|.+++||+++|+|++||+|++|||++|.+++|.+|+.+|+.+  +.
T Consensus        18 ~~~~~v~l~k-~~~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~g~   96 (123)
T d1ueqa_          18 GTFLSTTLKK-SNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQ   96 (123)
T ss_dssp             SEEEEEEEEC-CTTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTC
T ss_pred             CeEEEEEEEE-CCCeeCEEEEeecCCCCCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCCCC
Confidence            5667778755 56789999999998888999999999999999999999999999999999999999999999987  57


Q ss_pred             eEEEEeeecc
Q psy4897          97 VVELEVGVGY  106 (774)
Q Consensus        97 ~V~L~V~R~~  106 (774)
                      .|.|+|.|..
T Consensus        97 ~v~L~v~R~~  106 (123)
T d1ueqa_          97 SVNLVLCRGY  106 (123)
T ss_dssp             EEEEEEEESC
T ss_pred             EEEEEEEcCC
Confidence            8999998854

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.7e-15  Score=133.60  Aligned_cols=88  Identities=40%  Similarity=0.511  Sum_probs=78.4

Q ss_pred             CCCCcEEEEEEeec-CCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcC
Q psy4897          17 SSRDFYSENYKYTE-NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG   95 (774)
Q Consensus        17 ~s~~~~~V~l~rk~-~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag   95 (774)
                      .+.+++.|+|.|.+ +.+|||+|.+|.+...+++|..|.+|+||+++| |++||+|++|||++|.+++|.+++.+|+.++
T Consensus         5 s~~~~~~v~l~r~~~~~glG~~i~gg~~~~~~i~V~~v~~gg~A~~~g-L~~GD~Il~ING~~v~~~~~~~v~~ll~~~~   83 (101)
T d1ueza_           5 SSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGSK   83 (101)
T ss_dssp             CSCCCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSSS
T ss_pred             CCCCEEEEEEEECCCCCeeCEEEEecccCCCCEEEEEECCCChHHhcC-CCCCcEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            45678999998865 578999999999988899999999999999998 9999999999999999999999999999886


Q ss_pred             ceEEEEeeecc
Q psy4897          96 KVVELEVGVGY  106 (774)
Q Consensus        96 ~~V~L~V~R~~  106 (774)
                      + +.|+|.|..
T Consensus        84 ~-~~l~V~~~~   93 (101)
T d1ueza_          84 K-LVLSVYSAG   93 (101)
T ss_dssp             S-CCEEECCCC
T ss_pred             C-EEEEEEECC
Confidence            5 567776643

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=4.7e-15  Score=136.46  Aligned_cols=86  Identities=22%  Similarity=0.336  Sum_probs=77.0

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCC----CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKEN----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA   94 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~----~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a   94 (774)
                      .+..+|+|.++++.+|||+|.||...    ..+++|+.|.|++||+++|.|++||+|++|||++|.+++|++++.+|+.+
T Consensus        14 ~~~~ev~l~k~~~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~   93 (122)
T d1v5qa_          14 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS   93 (122)
T ss_dssp             EEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHH
T ss_pred             ceeEEEEEecCCCCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcC
Confidence            36778999999999999999998754    35799999999999999999999999999999999999999999999998


Q ss_pred             CceEEEEeee
Q psy4897          95 GKVVELEVGV  104 (774)
Q Consensus        95 g~~V~L~V~R  104 (774)
                      +..++|+|.+
T Consensus        94 ~~~~~l~l~~  103 (122)
T d1v5qa_          94 SITSKVTLEI  103 (122)
T ss_dssp             TTTTCEEEEE
T ss_pred             CCceEEEEEE
Confidence            8776666654

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8e-15  Score=130.53  Aligned_cols=86  Identities=29%  Similarity=0.398  Sum_probs=76.8

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV   97 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~   97 (774)
                      ...-+.|.+.++++.+|||+|.+|.+...|+||.+|.+||||+++| |++||+|++|||+++.+++|.+++.+|+.++. 
T Consensus         6 ~~~~~~v~i~~~~~~glG~~i~~g~~~~~gi~V~~V~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~~-   83 (101)
T d1x5na1           6 ENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRS-   83 (101)
T ss_dssp             CCSSEEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHCSS-
T ss_pred             CCccEEEEEEeeCCCcccEEEeccCCCCCCEEEEEECCCChHHhCC-CCcccEEEEECCEECCCCCHHHHHHHHhCCCC-
Confidence            3445788888999999999999999888899999999999999987 99999999999999999999999999999865 


Q ss_pred             EEEEeeec
Q psy4897          98 VELEVGVG  105 (774)
Q Consensus        98 V~L~V~R~  105 (774)
                      ++++|.+.
T Consensus        84 ~~l~v~~~   91 (101)
T d1x5na1          84 LTISIVAA   91 (101)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEEEC
Confidence            66666553

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=9.8e-15  Score=128.73  Aligned_cols=83  Identities=24%  Similarity=0.334  Sum_probs=69.7

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCC--CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcC--
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG--   95 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~--~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag--   95 (774)
                      .+..+++.+  .++|||+|.||.+.  ..++||++|.|||||+++|+|++||+|++|||+++.+++|.+|+.+|+++.  
T Consensus         8 ~~~~v~~~~--~~glG~~i~gg~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~   85 (96)
T d1wi4a1           8 AFRVITVTK--ETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLR   85 (96)
T ss_dssp             TEEEEEECC--SSCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCS
T ss_pred             cEEEEEecC--CCccCEEEEeccCCCCCCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCC
Confidence            444555533  45799999999765  357999999999999999999999999999999999999999999999873  


Q ss_pred             --ceEEEEeee
Q psy4897          96 --KVVELEVGV  104 (774)
Q Consensus        96 --~~V~L~V~R  104 (774)
                        ..+.|.+.|
T Consensus        86 ~~~~vel~~~R   96 (96)
T d1wi4a1          86 SESPWEIAFIR   96 (96)
T ss_dssp             SSSCEEEEEEC
T ss_pred             CCCeEEEEEEC
Confidence              557777654

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.4e-15  Score=133.46  Aligned_cols=85  Identities=25%  Similarity=0.310  Sum_probs=74.7

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCC----CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKEN----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~----~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      ..+..+|++.++++++|||+|+||.+.    ..+++|++|.++|||+++|.|++||+|++|||++|.+++|.+++.+|++
T Consensus         6 ~~e~~~V~l~~~~~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~   85 (99)
T d1x5ra1           6 HTETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRD   85 (99)
T ss_dssp             SSEEEEEEECCCTTTCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHH
T ss_pred             eeeeEEEEEEcCCCCCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            446788999999999999999998643    3679999999999999999999999999999999999999999999998


Q ss_pred             cCceEEEEe
Q psy4897          94 AGKVVELEV  102 (774)
Q Consensus        94 ag~~V~L~V  102 (774)
                      ++..++|++
T Consensus        86 ~~~~~~l~l   94 (99)
T d1x5ra1          86 AALAHKVVL   94 (99)
T ss_dssp             HHTTTCEEE
T ss_pred             CCCCCEEEE
Confidence            755544444

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.2e-14  Score=127.98  Aligned_cols=86  Identities=35%  Similarity=0.572  Sum_probs=75.1

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC---------CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHH
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN---------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA  244 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~---------~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~  244 (774)
                      ++|+|++.|.+..+|||++.+|...         ..+++|++|.++|||+++|+|++||+|++|||+++.+++|++++++
T Consensus         1 qpr~V~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~   80 (96)
T d2fcfa1           1 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA   80 (96)
T ss_dssp             SCEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCEEEEEEeCCCCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHH
Confidence            3688999998888999999876432         3589999999999999999999999999999999999999999999


Q ss_pred             HHHcCcceEEEEEEe
Q psy4897         245 LKRAGKLVELEVKYL  259 (774)
Q Consensus       245 Lk~~g~~V~L~V~R~  259 (774)
                      |+++++.++|+|+|.
T Consensus        81 lk~~~~~v~L~V~r~   95 (96)
T d2fcfa1          81 IRKAGNPVVFMVQSI   95 (96)
T ss_dssp             HHTCCSSEEEEEECC
T ss_pred             HHcCCCeEEEEEEEc
Confidence            999999999999863

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=5.4e-15  Score=132.07  Aligned_cols=80  Identities=26%  Similarity=0.419  Sum_probs=73.9

Q ss_pred             EEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeec
Q psy4897          26 YKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVG  105 (774)
Q Consensus        26 l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~  105 (774)
                      +....+.+|||+|.+|.+...+++|..|.+++||+++ +|++||+|++|||+++.+++|++|+++|+++++.|+|+|.|.
T Consensus         9 v~~~g~~g~Gf~i~gg~d~~~~v~V~~v~~g~~a~~~-~L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~v~L~v~R~   87 (103)
T d1wf7a_           9 VSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQA-HVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRA   87 (103)
T ss_dssp             EEEESSSCCSCCEEEETTTTEEEEECCCCTTCHHHHT-TCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEECCC
T ss_pred             EEEECCCCccEEEEcccCCCCCEEEEecCCCChHHHC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            4457888999999999998889999999999999985 599999999999999999999999999999999999999876


Q ss_pred             c
Q psy4897         106 Y  106 (774)
Q Consensus       106 ~  106 (774)
                      .
T Consensus        88 ~   88 (103)
T d1wf7a_          88 S   88 (103)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.9e-14  Score=121.78  Aligned_cols=76  Identities=17%  Similarity=0.192  Sum_probs=68.2

Q ss_pred             EEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEee
Q psy4897          24 ENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVG  103 (774)
Q Consensus        24 V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~  103 (774)
                      |++. +..++|||+|.++    .+++|+.|.+||||+++| |++||+|++|||+++.+++|.+++.+++++++.++|.|.
T Consensus         1 v~l~-r~~~g~Gf~l~~~----~~~~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~v~L~v~   74 (77)
T d2f5ya1           1 ITIP-RGKDGFGFTICCD----SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVW   74 (77)
T ss_dssp             EEEE-CBTTBTSEEEECS----SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEE
T ss_pred             CEEe-cCCCcccEEEECC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEE
Confidence            3554 4456799999964    469999999999999998 999999999999999999999999999999999999998


Q ss_pred             ec
Q psy4897         104 VG  105 (774)
Q Consensus       104 R~  105 (774)
                      |.
T Consensus        75 R~   76 (77)
T d2f5ya1          75 RM   76 (77)
T ss_dssp             EC
T ss_pred             EE
Confidence            73

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.2e-15  Score=133.95  Aligned_cols=78  Identities=31%  Similarity=0.423  Sum_probs=69.4

Q ss_pred             EeecCCcccEEEEccCCCC---CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc--CceEEEE
Q psy4897          27 KYTENNGLGISIKGGKENK---MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GKVVELE  101 (774)
Q Consensus        27 ~rk~~~gLGfsI~GG~e~~---~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a--g~~V~L~  101 (774)
                      .++.+++|||+|.||.+.+   .|+||++|.|||||+++|+|++||+|++|||+++.+++|++|+.+|+++  +..++|.
T Consensus        25 ~~~~~~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l~  104 (108)
T d2cssa1          25 PKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEII  104 (108)
T ss_dssp             SSSCSSCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEEE
T ss_pred             ecCCCCCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEE
Confidence            3456789999999997653   4899999999999999999999999999999999999999999999976  4568888


Q ss_pred             eee
Q psy4897         102 VGV  104 (774)
Q Consensus       102 V~R  104 (774)
                      |.|
T Consensus       105 v~R  107 (108)
T d2cssa1         105 VSR  107 (108)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            876

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.1e-14  Score=122.64  Aligned_cols=81  Identities=23%  Similarity=0.319  Sum_probs=73.5

Q ss_pred             CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc-CceE
Q psy4897          20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA-GKVV   98 (774)
Q Consensus        20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a-g~~V   98 (774)
                      +.++|++.|.+.++|||+|.++.   .+++|.+|.+||||+++| |++||+|++|||+++.++++++++.+|+.+ +..|
T Consensus         2 ~pr~v~l~k~~~~~lG~~l~~~~---~g~~V~~v~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v   77 (85)
T d1w9ea1           2 DPREVILCKDQDGKIGLRLKSID---NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKI   77 (85)
T ss_dssp             CCEEEEEECCTTSCCSEEEEEET---TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEE
T ss_pred             CCEEEEEEeCCCCCEeEEEEeCC---CCEEEEEECCCCHHHHcC-CCCccEEEEECCEEeCCCCHHHHHHHHhcCCCCEE
Confidence            56889999999999999998763   479999999999999998 999999999999999999999999999976 5678


Q ss_pred             EEEeee
Q psy4897          99 ELEVGV  104 (774)
Q Consensus        99 ~L~V~R  104 (774)
                      +|+|.+
T Consensus        78 ~l~v~~   83 (85)
T d1w9ea1          78 TMTIRD   83 (85)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            888854

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.3e-14  Score=120.92  Aligned_cols=75  Identities=21%  Similarity=0.386  Sum_probs=67.4

Q ss_pred             cEEEEEEee-cCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897          21 FYSENYKYT-ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE   99 (774)
Q Consensus        21 ~~~V~l~rk-~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~   99 (774)
                      +.+|.+.|. ...+|||+|.+|       +|.+|.|||||+++| |++||+|++|||+++.+++|.+++++|++++..++
T Consensus         1 V~tv~l~r~~~~~~lGf~i~~g-------~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~   72 (79)
T d1y7na1           1 VTTVLIRRPDLRYQLGFSVQNG-------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIH   72 (79)
T ss_dssp             CEEEEEEESSTTSCCCEEEETT-------EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEE
T ss_pred             CEEEEEEcCCCCCCcCEEEECC-------EEEEEcCCCHHHHCC-CCCCCEEEEECCEEeCCCCHHHHHHHHHcCCCEEE
Confidence            356777775 457999999875       699999999999976 99999999999999999999999999999999999


Q ss_pred             EEee
Q psy4897         100 LEVG  103 (774)
Q Consensus       100 L~V~  103 (774)
                      |+|.
T Consensus        73 l~vi   76 (79)
T d1y7na1          73 MKTM   76 (79)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9985

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=5.6e-15  Score=136.87  Aligned_cols=85  Identities=29%  Similarity=0.462  Sum_probs=74.0

Q ss_pred             EEEEEEeecCCcccEEEEccCCCC----CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc---
Q psy4897          22 YSENYKYTENNGLGISIKGGKENK----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA---   94 (774)
Q Consensus        22 ~~V~l~rk~~~gLGfsI~GG~e~~----~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a---   94 (774)
                      ++|++.+++..+|||+|.||.+..    .++||.+|.|++||+++|+|++||+|++|||++|.+++|.+|+.+||++   
T Consensus        27 ~~v~l~~~~~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~  106 (127)
T d1wg6a_          27 LEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSM  106 (127)
T ss_dssp             EEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEccCCCCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcccc
Confidence            344555667789999999987754    4799999999999999999999999999999999999999999999986   


Q ss_pred             ----CceEEEEeeecc
Q psy4897          95 ----GKVVELEVGVGY  106 (774)
Q Consensus        95 ----g~~V~L~V~R~~  106 (774)
                          ...|+|+|.|..
T Consensus       107 ~~~~~~~V~L~V~R~~  122 (127)
T d1wg6a_         107 EGNIRGMIQLVILRRS  122 (127)
T ss_dssp             HHHHTCEEEEEEEECS
T ss_pred             cCCCCCEEEEEEeeCC
Confidence                458999998753

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=4.2e-14  Score=125.54  Aligned_cols=83  Identities=22%  Similarity=0.322  Sum_probs=76.6

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV   97 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~   97 (774)
                      ...+..|.+.|..+.+|||+|.++   ..+++|++|.|||||+++|.|++||+|++|||+++.+++|++++.+|+.++..
T Consensus        16 ~~~i~~V~l~k~~~~~lG~~v~~~---~~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~   92 (100)
T d1va8a1          16 GETVKIVRIEKARDIPLGATVRNE---MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGT   92 (100)
T ss_dssp             TEECEEEEEEECTTCCCCEEEEEC---SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEE
T ss_pred             CceEEEEEEEeCCCCCccEEEEec---CCCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCCCe
Confidence            456788999999999999999865   35899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEee
Q psy4897          98 VELEVG  103 (774)
Q Consensus        98 V~L~V~  103 (774)
                      |+|+|.
T Consensus        93 v~L~v~   98 (100)
T d1va8a1          93 LTFVLI   98 (100)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999885

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.7e-14  Score=131.72  Aligned_cols=85  Identities=32%  Similarity=0.398  Sum_probs=74.2

Q ss_pred             EEEEEEeec------CCcccEEEEccCCCC-----CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHH
Q psy4897          22 YSENYKYTE------NNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA   90 (774)
Q Consensus        22 ~~V~l~rk~------~~gLGfsI~GG~e~~-----~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~l   90 (774)
                      ..+.+.+..      +.+|||+|.||.+.+     .++||..|.||+||+++|.|++||+|++|||++|.+++|++|+.+
T Consensus        14 ~~v~l~r~~~~~~~~g~glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~   93 (117)
T d1ujda_          14 ARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSI   93 (117)
T ss_dssp             EEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             eeEEEEecccccccCCcccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHH
Confidence            445555443      468999999987643     379999999999999999999999999999999999999999999


Q ss_pred             HHhcCceEEEEeeecc
Q psy4897          91 LKRAGKVVELEVGVGY  106 (774)
Q Consensus        91 Lk~ag~~V~L~V~R~~  106 (774)
                      |++++..|+|+|.|..
T Consensus        94 i~~~~~~v~l~v~r~~  109 (117)
T d1ujda_          94 ISQQSGEAEICVRLDL  109 (117)
T ss_dssp             HSCCSSCEEEEEESSC
T ss_pred             HHcCCCeEEEEEEECC
Confidence            9999999999998764

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=2.1e-14  Score=131.26  Aligned_cols=79  Identities=28%  Similarity=0.511  Sum_probs=71.3

Q ss_pred             ecCCcccEEEEccCCCCC-CeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc----CceEEEEee
Q psy4897          29 TENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA----GKVVELEVG  103 (774)
Q Consensus        29 k~~~gLGfsI~GG~e~~~-gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a----g~~V~L~V~  103 (774)
                      +.+++|||+|.||.+.+. +++|.+|.|||||+++|+|++||+|++|||+++.+++|.+|+.+|+++    +..|+|+|.
T Consensus        25 ~~~~~lG~~i~gg~d~~~~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~~V~L~v~  104 (118)
T d1v6ba_          25 KKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVA  104 (118)
T ss_dssp             ESCSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred             cCCCCCCEEEEeeecCCCCCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCCEEEEEEE
Confidence            446799999999988764 699999999999999999999999999999999999999999999965    678999998


Q ss_pred             eccc
Q psy4897         104 VGYG  107 (774)
Q Consensus       104 R~~~  107 (774)
                      |..+
T Consensus       105 r~pp  108 (118)
T d1v6ba_         105 VCPP  108 (118)
T ss_dssp             CCCS
T ss_pred             eCCC
Confidence            8653

>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Alpha-1-syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=5.6e-15  Score=127.77  Aligned_cols=61  Identities=26%  Similarity=0.514  Sum_probs=59.0

Q ss_pred             CCCcCcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         298 RADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       298 ~~~~~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      ..|.+.||+||||++|++..+|++||+|||+++||++++||||+|.++++.||+|||.||.
T Consensus        44 ~~d~k~IPLKmcyvtR~~~~~D~EnR~lElhSpDG~~t~iLR~kD~a~A~~WF~Aihs~i~  104 (105)
T d2adza1          44 LSEAKHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG  104 (105)
T ss_dssp             SCSCEEEETTTCEEEEECCSSCCSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred             ccccceeeeeeEEeeecccCCCCcccEEEEECCCCCceEEEEcCCHHHHHHHHHHHHHhhc
Confidence            4588999999999999999999999999999999999999999999999999999999986

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.6e-14  Score=130.40  Aligned_cols=85  Identities=27%  Similarity=0.316  Sum_probs=76.3

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV   97 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~   97 (774)
                      ..+++.|++.| .+.+|||+|.+|.+  .++||+.|.+||||+++| |++||+|++|||++|.+++|++|+.+|+.++..
T Consensus        17 ~~~~r~v~l~k-~~~glG~~i~gg~~--~gi~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~   92 (117)
T d1uita_          17 VEEPRHVKVQK-GSEPLGISIVSGEK--GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCDT   92 (117)
T ss_dssp             SCCCEEEEEEC-SSCCCCEEEEECTT--SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSCCSE
T ss_pred             CCCCEEEEEEe-CCCccCEEEEccCC--CCEEEEEEecCChHHhCC-CCCCCEeeeECCcccCCCCHHHHHHHHHCCCCe
Confidence            45678888876 46789999998865  489999999999999986 999999999999999999999999999999999


Q ss_pred             EEEEeeecc
Q psy4897          98 VELEVGVGY  106 (774)
Q Consensus        98 V~L~V~R~~  106 (774)
                      |+|+|.+..
T Consensus        93 v~l~v~~~p  101 (117)
T d1uita_          93 ITILAQYNP  101 (117)
T ss_dssp             EEEEECCCS
T ss_pred             EEEEEEECC
Confidence            999997653

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=7.7e-14  Score=124.64  Aligned_cols=85  Identities=34%  Similarity=0.583  Sum_probs=77.6

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcce
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLV  252 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V  252 (774)
                      ..+|+|++.+....+|||.+.++.+...+++|..|.+++||+++| |++||+|++|||+++.+++|++++++|++++ .+
T Consensus        14 ~~pr~V~l~r~~~~~lGf~i~gg~~~~~gi~V~~V~~~s~A~~~G-L~~GD~Il~VNg~~v~~~~~~ev~~llk~~~-~v   91 (104)
T d1wi2a_          14 FLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTAR-EI   91 (104)
T ss_dssp             SCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHSS-SE
T ss_pred             CcCEEEEEEeCCCCCcceEEEccccCCCCEEEEEECCCChhHhcc-cccCCEEEEECCEECCCCCHHHHHHHHhcCC-eE
Confidence            347899999987789999999988888899999999999999998 9999999999999999999999999999864 68


Q ss_pred             EEEEEEe
Q psy4897         253 ELEVKYL  259 (774)
Q Consensus       253 ~L~V~R~  259 (774)
                      +|+|+|.
T Consensus        92 ~l~V~~~   98 (104)
T d1wi2a_          92 SMRVRFF   98 (104)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEC
Confidence            8998764

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.9e-14  Score=128.43  Aligned_cols=82  Identities=32%  Similarity=0.379  Sum_probs=71.1

Q ss_pred             EEEEEeecCCcccEEEEccCCCCC-CeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcC-----c
Q psy4897          23 SENYKYTENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG-----K   96 (774)
Q Consensus        23 ~V~l~rk~~~gLGfsI~GG~e~~~-gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag-----~   96 (774)
                      ++...++.+++|||+|.||.+... +++|.+|.|++||+++|.|++||+|++|||+++.+++|.+|+.+|++++     .
T Consensus         8 ~vv~~~k~~~~lG~~i~gg~~~~~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~~~~   87 (103)
T d1ufxa_           8 TLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRD   87 (103)
T ss_dssp             EEEEEECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCS
T ss_pred             EEEEEEeCCCccCEEEeeecCCCCCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCCccc
Confidence            455567788999999999987654 5899999999999999999999999999999999999999999999874     3


Q ss_pred             eEEEEeee
Q psy4897          97 VVELEVGV  104 (774)
Q Consensus        97 ~V~L~V~R  104 (774)
                      .++|.|.+
T Consensus        88 ~~~l~v~~   95 (103)
T d1ufxa_          88 YIDFLVTE   95 (103)
T ss_dssp             EEEEEECC
T ss_pred             eEEEEEeC
Confidence            46666643

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.2e-14  Score=123.65  Aligned_cols=83  Identities=28%  Similarity=0.438  Sum_probs=75.4

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEE
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVEL  254 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L  254 (774)
                      +++|++.+  ..+|||++.++.+...|++|..|.+++||++++ |++||+|++|||+++.+++|++++++|+++++.++|
T Consensus         2 p~~V~l~~--~~~~Gf~i~gg~~~~~~v~V~~v~~gs~A~~~~-L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~~v~L   78 (85)
T d1rgwa_           2 AYSVTLTG--PGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSL   78 (85)
T ss_dssp             EEEEEECC--SSCCCEEECCCGGGTSCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEE
T ss_pred             CEEEEecC--CCCCCEEEEeecCCCCCEEEEEecCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEE
Confidence            45677754  678999999998888899999999999999876 999999999999999999999999999999999999


Q ss_pred             EEEEec
Q psy4897         255 EVKYLR  260 (774)
Q Consensus       255 ~V~R~~  260 (774)
                      +|.|.+
T Consensus        79 ~V~R~~   84 (85)
T d1rgwa_          79 TLQKSK   84 (85)
T ss_dssp             EEESCC
T ss_pred             EEEECC
Confidence            998764

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=4.1e-15  Score=132.92  Aligned_cols=79  Identities=25%  Similarity=0.393  Sum_probs=73.7

Q ss_pred             EeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          27 KYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        27 ~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      .++.+.+|||+|.||.+...+++|+.|.|++||++++ |++||+|++|||++|.+++|.+|+.+|+.+++.|+|+|.|..
T Consensus        10 ~~~g~~~~Gf~l~gg~d~~~~i~V~~v~~g~~A~~~~-L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~v~l~V~R~~   88 (103)
T d1v5la_          10 VLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE   88 (103)
T ss_dssp             EEESSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCT
T ss_pred             EEECCCCCCEEEEeecCCCCCEEEEEccCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECC
Confidence            3477899999999999988899999999999999865 999999999999999999999999999999999999998864

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=4.4e-14  Score=125.88  Aligned_cols=93  Identities=42%  Similarity=0.610  Sum_probs=82.7

Q ss_pred             ccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcc
Q psy4897         172 ENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKL  251 (774)
Q Consensus       172 ~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~  251 (774)
                      ..++|.|++.|. ..+|||++.++.+ ..+++|..|.++++|+++|.|++||+|++|||+++.+++|++++++|++++..
T Consensus         7 ~~~~r~V~l~k~-~~glG~~i~~~~~-~~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~   84 (102)
T d1tp5a1           7 PREPRRIVIHRG-STGLGFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQT   84 (102)
T ss_dssp             CCSCEEEEEECT-TSCCCEEEEECGG-GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSE
T ss_pred             CCCCEEEEEEeC-CCcccEEEEeccC-CCCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCCCe
Confidence            345799999985 6789999998754 56899999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeccccccc
Q psy4897         252 VELEVKYLREVTPYF  266 (774)
Q Consensus       252 V~L~V~R~~~~~~~~  266 (774)
                      ++|+|.|.++.+..+
T Consensus        85 v~L~v~~~~~~~~~~   99 (102)
T d1tp5a1          85 VTIIAQYKPEEYSRF   99 (102)
T ss_dssp             EEEEEEECHHHHHTT
T ss_pred             EEEEEEECCcccccc
Confidence            999999877665544

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=8.5e-14  Score=122.37  Aligned_cols=88  Identities=33%  Similarity=0.502  Sum_probs=80.0

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEE
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVEL  254 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L  254 (774)
                      ..+|.+.+. .++|||++.++.+...+++|.+|.++++|+++|.|++||+|++|||+++.+++|++++++|+++++.+.|
T Consensus         4 i~tV~l~k~-~~~lG~~i~g~~~~~~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~l   82 (95)
T d1n7ea_           4 IYTVELKRY-GGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTL   82 (95)
T ss_dssp             EEEEEEECT-TSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEE
T ss_pred             EEEEEEEEC-CCcEeEEEEecccCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            567888875 6789999999887778899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecccc
Q psy4897         255 EVKYLREVT  263 (774)
Q Consensus       255 ~V~R~~~~~  263 (774)
                      +|.|.....
T Consensus        83 ~v~r~~~~~   91 (95)
T d1n7ea_          83 KIKKQTDAQ   91 (95)
T ss_dssp             EEECCCCCC
T ss_pred             EEEECCCCc
Confidence            999865543

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.7e-13  Score=126.89  Aligned_cols=87  Identities=33%  Similarity=0.516  Sum_probs=78.7

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcce
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLV  252 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V  252 (774)
                      ...+.|++.+....+|||.+.+|.+...|++|..|.++++|+++| |++||+|++|||++|.+++|++++++|++++ .+
T Consensus        19 ~~~~~v~l~~~~~~~lGf~i~gg~~~~~gv~V~~V~~g~~A~~~g-L~~GD~Il~INg~~v~~~s~~evv~~lr~~~-~v   96 (128)
T d1uf1a_          19 GDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSSR-HL   96 (128)
T ss_dssp             SSEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCS-EE
T ss_pred             CCeEEEEEEECCCCccCEEEEeeccCCCCEEEEEECCCChHHhcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC-cE
Confidence            356889999987889999999998888899999999999999998 9999999999999999999999999998864 68


Q ss_pred             EEEEEEecc
Q psy4897         253 ELEVKYLRE  261 (774)
Q Consensus       253 ~L~V~R~~~  261 (774)
                      .|+|++...
T Consensus        97 ~l~v~~~~~  105 (128)
T d1uf1a_          97 ILTVKDVGR  105 (128)
T ss_dssp             EEEEECCSC
T ss_pred             EEEEEECCc
Confidence            888877644

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.49  E-value=7e-14  Score=122.52  Aligned_cols=84  Identities=31%  Similarity=0.490  Sum_probs=76.2

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCC------CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA  248 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~------~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~  248 (774)
                      .++|++.|.+..+|||++.++.+.      ..+++|+.|.|++||+++|+|++||+|++|||+++.+++|++++++|+++
T Consensus         4 i~~V~L~k~~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~   83 (94)
T d1ihja_           4 IHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEA   83 (94)
T ss_dssp             EEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHcC
Confidence            578899998888999999876432      34699999999999999999999999999999999999999999999999


Q ss_pred             CcceEEEEEE
Q psy4897         249 GKLVELEVKY  258 (774)
Q Consensus       249 g~~V~L~V~R  258 (774)
                      +..++|+|+|
T Consensus        84 ~~~v~L~V~R   93 (94)
T d1ihja_          84 DFKIELEIQT   93 (94)
T ss_dssp             CSEEEEEEEE
T ss_pred             CCEEEEEEEe
Confidence            9999999987

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1e-13  Score=121.17  Aligned_cols=84  Identities=48%  Similarity=0.635  Sum_probs=75.2

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCC-----CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcC
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG  249 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~-----~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g  249 (774)
                      .+.|+|.|. ..+|||++.+|.+.     ..+++|+.|.++|||+++|.|++||+|++|||+++.+++|++++++|++++
T Consensus         2 ~~~V~l~k~-~~glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~   80 (93)
T d1rgra_           2 YEEITLERG-NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG   80 (93)
T ss_dssp             EEEEEEECC-SSCCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHTT
T ss_pred             CEEEEEEeC-CCcCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            356788875 57899999987653     468999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEEe
Q psy4897         250 KLVELEVKYL  259 (774)
Q Consensus       250 ~~V~L~V~R~  259 (774)
                      ..|.|+|.|.
T Consensus        81 ~~v~L~v~R~   90 (93)
T d1rgra_          81 SIVRLYVMRR   90 (93)
T ss_dssp             TEEEEEEECS
T ss_pred             CEEEEEEEeC
Confidence            9999999874

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.6e-13  Score=123.08  Aligned_cols=86  Identities=33%  Similarity=0.482  Sum_probs=77.0

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCC--------CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHH
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKE--------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL  245 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~--------~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~L  245 (774)
                      +..+|+|.|. ..+|||++.||.+        ...++||.+|.+++||+++|+|++||+|++|||+++.+++|++++++|
T Consensus         8 ~~~~V~l~k~-~~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~l   86 (107)
T d1uhpa_           8 KSLTLVLHRD-SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAF   86 (107)
T ss_dssp             EEEEEEECCS-SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CEEEEEEEEC-CCccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHHH
Confidence            4678888875 5789999998753        246899999999999999999999999999999999999999999999


Q ss_pred             HHcCcceEEEEEEec
Q psy4897         246 KRAGKLVELEVKYLR  260 (774)
Q Consensus       246 k~~g~~V~L~V~R~~  260 (774)
                      ++++..++|+|.|..
T Consensus        87 k~~~~~v~l~v~r~~  101 (107)
T d1uhpa_          87 KTAKEPIVVQVLRRT  101 (107)
T ss_dssp             HHCCSSEEEEEEECC
T ss_pred             HhCCCcEEEEEEECC
Confidence            999999999998754

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.4e-13  Score=120.24  Aligned_cols=84  Identities=35%  Similarity=0.526  Sum_probs=73.0

Q ss_pred             eEEEEEeccCCCCcceEEeCCCC---CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcc
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKL  251 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~---~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~  251 (774)
                      ..++++.+  ..+|||++.++.+   ...+++|++|.++|||+++|+|++||+|++|||+++.+++|++++++|++++..
T Consensus         5 i~~v~l~~--~~glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~~~   82 (92)
T d1t2ma1           5 IITVTLKK--QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSV   82 (92)
T ss_dssp             EEEEEEEC--SSSCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCCSE
T ss_pred             EEEEEEeC--CCccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcCCCe
Confidence            44566655  4679999987643   245799999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEec
Q psy4897         252 VELEVKYLR  260 (774)
Q Consensus       252 V~L~V~R~~  260 (774)
                      |+|+|.|.+
T Consensus        83 v~L~v~R~g   91 (92)
T d1t2ma1          83 VTLEVAKQG   91 (92)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEeCC
Confidence            999998853

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=3.1e-13  Score=119.34  Aligned_cols=86  Identities=29%  Similarity=0.409  Sum_probs=75.7

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCC--------CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHH
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKE--------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL  245 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~--------~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~L  245 (774)
                      +.+.|+|.|. ..+|||++.+..+        ...+++|.+|.+++||+++|.|++||+|++|||+++.+++|++++++|
T Consensus         4 ~~~~V~L~k~-~~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~l   82 (99)
T d1ozia_           4 DTFEVELAKT-DGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETL   82 (99)
T ss_dssp             CEEEEEEECC-SSSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             CEEEEEEEEC-CCCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHHH
Confidence            4678999886 5689999975332        235799999999999999999999999999999999999999999999


Q ss_pred             HHcCcceEEEEEEec
Q psy4897         246 KRAGKLVELEVKYLR  260 (774)
Q Consensus       246 k~~g~~V~L~V~R~~  260 (774)
                      ++++..|+|+|.|.+
T Consensus        83 k~~~~~v~L~v~R~~   97 (99)
T d1ozia_          83 RNTGQVVHLLLEKGQ   97 (99)
T ss_dssp             HHSCSEEEEEEECCC
T ss_pred             HCCCCeEEEEEEeCC
Confidence            999999999998753

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.2e-13  Score=118.85  Aligned_cols=84  Identities=38%  Similarity=0.571  Sum_probs=74.8

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCC-----CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcC
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG  249 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~-----~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g  249 (774)
                      ...|+|.|. ..+|||++.++.+.     ..+++|.+|.+++||+++|.|++||+|++|||+++.+++|++++++|++++
T Consensus         2 v~~V~L~k~-~~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~~   80 (92)
T d2fe5a1           2 IMEVNLLKG-PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTS   80 (92)
T ss_dssp             EEEEEEECC-TTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCC
T ss_pred             EEEEEEEEC-CCccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcCC
Confidence            356788885 47899999876532     468999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEEe
Q psy4897         250 KLVELEVKYL  259 (774)
Q Consensus       250 ~~V~L~V~R~  259 (774)
                      +.++|+|.|.
T Consensus        81 ~~v~L~v~Rp   90 (92)
T d2fe5a1          81 DMVYLKVAKP   90 (92)
T ss_dssp             SEEEEEEECC
T ss_pred             CEEEEEEECC
Confidence            9999999864

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=2.6e-13  Score=120.05  Aligned_cols=87  Identities=28%  Similarity=0.434  Sum_probs=78.2

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCC--CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKE--NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKL  251 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~--~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~  251 (774)
                      ..+.+++.+....+|||.+.++.+  ...+++|..|.|+|+|+++|.|++||+|++|||+++.+++|++++++|++++..
T Consensus        10 ~~~~V~l~k~~~~~lG~~v~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~~~   89 (99)
T d1p1da2          10 GTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDL   89 (99)
T ss_dssp             SCEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTC
T ss_pred             CcEEEEEEECCCCccCEEEEecCCCCCCCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCCCe
Confidence            467888988878899999987643  345799999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEec
Q psy4897         252 VELEVKYLR  260 (774)
Q Consensus       252 V~L~V~R~~  260 (774)
                      ++|+|.|..
T Consensus        90 v~L~V~r~~   98 (99)
T d1p1da2          90 VKLKIRKDE   98 (99)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEeCC
Confidence            999998754

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.6e-13  Score=117.53  Aligned_cols=82  Identities=21%  Similarity=0.381  Sum_probs=75.5

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEE
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVEL  254 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L  254 (774)
                      .|.|.+.|....+|||.+.++.  ..+++|+.|.+||||+++|.|++||+|++|||+++.+++|++++++|+++++.|+|
T Consensus         2 ~R~V~l~k~~~~~lG~~l~~~~--~~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~L   79 (88)
T d1kwaa_           2 SRLVQFQKNTDEPMGITLKMNE--LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITF   79 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSC--GGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEE
T ss_pred             cEEEEEEeCCCCCccEEEEEcC--CCCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCCCcEEE
Confidence            6889999988899999998763  35799999999999999999999999999999999999999999999999889999


Q ss_pred             EEEE
Q psy4897         255 EVKY  258 (774)
Q Consensus       255 ~V~R  258 (774)
                      +|.+
T Consensus        80 ~i~p   83 (88)
T d1kwaa_          80 KIVP   83 (88)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8863

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=4.4e-13  Score=119.38  Aligned_cols=86  Identities=20%  Similarity=0.444  Sum_probs=76.9

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC------------CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHH
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN------------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA  241 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~------------~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~  241 (774)
                      +.+++.+.+....+|||.+.++...            ..+++|..|.+++||+++| |++||+|++|||+++.+++|+++
T Consensus         5 ~~~tV~l~r~~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aG-L~~GD~Il~INg~~v~~~~h~ev   83 (104)
T d1q3oa_           5 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQV   83 (104)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHH
T ss_pred             ceEEEEEEECCCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEcCeEcCCCCHHHH
Confidence            4788999998888999999876432            2468999999999999998 99999999999999999999999


Q ss_pred             HHHHHHcCcceEEEEEEec
Q psy4897         242 VKALKRAGKLVELEVKYLR  260 (774)
Q Consensus       242 v~~Lk~~g~~V~L~V~R~~  260 (774)
                      +++|++++..++|+|.+..
T Consensus        84 v~~ik~~~~~v~L~V~~~~  102 (104)
T d1q3oa_          84 VNMIRQGGNTLMVKVVMVT  102 (104)
T ss_dssp             HHHHHHTTTEEEEEEEEEE
T ss_pred             HHHHHcCCCeEEEEEEecC
Confidence            9999999999999998753

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.43  E-value=2.5e-13  Score=118.69  Aligned_cols=84  Identities=30%  Similarity=0.396  Sum_probs=74.3

Q ss_pred             EEEEEeccCCCCcceEEeCCCCC--CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc---Cc
Q psy4897         176 RIIRVKKSENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA---GK  250 (774)
Q Consensus       176 r~V~L~k~~~~~LGfsi~gg~~~--~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~---g~  250 (774)
                      .+|++.++..++|||++.++...  ..++||.+|.|+|||+++|+|++||+|++|||+++.+++|++++++|+..   ..
T Consensus         3 ~tV~l~k~~~~~lGi~i~gg~~~~~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~~   82 (92)
T d2f0aa1           3 ITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPG   82 (92)
T ss_dssp             EEEEECHHHHCSCCEEEECCCCTTSCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSSS
T ss_pred             EEEEEEeCCCCccCEEEEccCCCCCCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCCCC
Confidence            46888887778999999987653  36899999999999999999999999999999999999999999999873   45


Q ss_pred             ceEEEEEEe
Q psy4897         251 LVELEVKYL  259 (774)
Q Consensus       251 ~V~L~V~R~  259 (774)
                      .++|+|.|.
T Consensus        83 ~v~L~V~R~   91 (92)
T d2f0aa1          83 PIVLTVAKL   91 (92)
T ss_dssp             CEEEEEECC
T ss_pred             cEEEEEEeC
Confidence            789999874

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.6e-13  Score=121.35  Aligned_cols=87  Identities=38%  Similarity=0.558  Sum_probs=77.0

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCC------CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKE------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR  247 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~------~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~  247 (774)
                      ..+.+.+.|. ..+|||++.++.+      ...+++|..|.++++|+++|.|++||+|++|||++|.+++|++++++|++
T Consensus         7 ~~~~v~l~k~-~~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~   85 (105)
T d1whaa_           7 GRHVACLARS-ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTA   85 (105)
T ss_dssp             EEEEEEECCC-TTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTS
T ss_pred             CCEEEEEEEC-CCccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHc
Confidence            4677888885 5679999998753      24689999999999999999999999999999999999999999999999


Q ss_pred             cCcceEEEEEEecc
Q psy4897         248 AGKLVELEVKYLRE  261 (774)
Q Consensus       248 ~g~~V~L~V~R~~~  261 (774)
                      ++..|+|+|.|...
T Consensus        86 ~~~~v~l~v~R~~~   99 (105)
T d1whaa_          86 ASPTIALLLEREAG   99 (105)
T ss_dssp             CCSCEEEEEEECCC
T ss_pred             CCCeEEEEEEECCC
Confidence            98999999988543

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.6e-13  Score=120.74  Aligned_cols=86  Identities=27%  Similarity=0.444  Sum_probs=76.9

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC-CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcce
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN-KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLV  252 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~-~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V  252 (774)
                      ..+.+.+.+....+|||++.+|.+. ..+++|.+|.+||+|+++|+|++||+|++|||+++.+++|++++++|++++..+
T Consensus         8 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~   87 (107)
T d1x6da1           8 GIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPR   87 (107)
T ss_dssp             TEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSS
T ss_pred             CcEEEEEEcCCCCccCEEEeeccCCCCCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCCCE
Confidence            4788889888788999999988664 578999999999999999999999999999999999999999999999987777


Q ss_pred             EEEEEEe
Q psy4897         253 ELEVKYL  259 (774)
Q Consensus       253 ~L~V~R~  259 (774)
                      .+++.+.
T Consensus        88 ~l~v~~r   94 (107)
T d1x6da1          88 QAVIVTR   94 (107)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            7776654

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.5e-13  Score=124.20  Aligned_cols=88  Identities=31%  Similarity=0.480  Sum_probs=76.3

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCC---CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcC
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG  249 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~---~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g  249 (774)
                      ...+.|++.|. ..+|||+|.+|.+   ...++||.+|.+|++|+++|+|++||+|++|||+++.+++|++++++|+..+
T Consensus        28 ~~~~~V~l~k~-~~glG~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~  106 (130)
T d1i16a_          28 ATVCTVTLEKM-SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALP  106 (130)
T ss_dssp             EEEEEEEEETT-SSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSC
T ss_pred             CeEEEEEEEeC-CCccCEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCC
Confidence            35677888885 5689999998765   2468999999999999999999999999999999999999999999999854


Q ss_pred             -cceEEEEEEecc
Q psy4897         250 -KLVELEVKYLRE  261 (774)
Q Consensus       250 -~~V~L~V~R~~~  261 (774)
                       ..|+|+|.|...
T Consensus       107 ~~~v~l~v~r~~~  119 (130)
T d1i16a_         107 DGPVTIVIRRKSL  119 (130)
T ss_dssp             SSEEEEEEEEESS
T ss_pred             CCeEEEEEEcCCC
Confidence             588999987533

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=5.6e-14  Score=127.04  Aligned_cols=81  Identities=25%  Similarity=0.308  Sum_probs=70.1

Q ss_pred             CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc-Cce
Q psy4897          19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA-GKV   97 (774)
Q Consensus        19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a-g~~   97 (774)
                      ..+++|+|.|. .++|||+|.|+    .+++|..|.|++||+++| |++||+|++|||++|.+++|++++.+|+.+ +..
T Consensus        14 ~~pr~v~l~k~-~~g~Gf~i~g~----~~v~V~~V~~~spA~~~G-L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~~   87 (111)
T d1vaea_          14 SPPRGIHFTVE-EGDLGFTLRGN----TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEE   87 (111)
T ss_dssp             CCCCCCCEECC-SSCCSCCEESS----SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSE
T ss_pred             CCCEEEEEEEC-CCccCEEEECC----ccEEEEEEcCCChHHhcc-cCcccEEEEECCEEcCCCCHHHHHHHHHcCCCCe
Confidence            34567788665 56899999875    369999999999999998 999999999999999999999999999987 467


Q ss_pred             EEEEeeec
Q psy4897          98 VELEVGVG  105 (774)
Q Consensus        98 V~L~V~R~  105 (774)
                      |+|+|.+.
T Consensus        88 v~l~v~~~   95 (111)
T d1vaea_          88 VEMKVVSL   95 (111)
T ss_dssp             ECEEEECE
T ss_pred             EEEEEECC
Confidence            88888764

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.5e-13  Score=114.53  Aligned_cols=76  Identities=22%  Similarity=0.397  Sum_probs=71.1

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      .+|++++.|...+.|||+++++       +|++|.+++||+++| |++||+|++|||+++.+++|++++++|++++..++
T Consensus         4 ~pr~V~l~k~~~g~~Gf~i~~g-------~V~~v~~g~~A~~~G-l~~GD~Il~INg~~v~~~t~~~~~~ll~~~~~~v~   75 (82)
T d1r6ja_           4 DPRTITMHKDSTGHVGFIFKNG-------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVT   75 (82)
T ss_dssp             CCEEEEEECCTTSCCCEEEETT-------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEE
T ss_pred             CCEEEEEEeCCCCCcCEEEEEE-------EEEEECCCChHHhcC-cCCCCEEEEeCCeEEeeCCHHHHHHHHHcCCCEEE
Confidence            4789999998777899999875       699999999999998 99999999999999999999999999999999999


Q ss_pred             EEEE
Q psy4897         254 LEVK  257 (774)
Q Consensus       254 L~V~  257 (774)
                      |+|.
T Consensus        76 l~v~   79 (82)
T d1r6ja_          76 ITIM   79 (82)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9986

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.8e-14  Score=126.89  Aligned_cols=87  Identities=36%  Similarity=0.418  Sum_probs=77.6

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCC---------CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHH
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKEN---------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL  245 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~---------~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~L  245 (774)
                      .+.|++.|....+|||++.+|.+.         ..+++|.+|.+++||+++|+|++||+|++|||++|.+++|++++++|
T Consensus        10 ~~~V~l~k~~~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~l   89 (111)
T d1ujua_          10 LRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLL   89 (111)
T ss_dssp             SSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHH
T ss_pred             eEEEEEEeCCCCccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHHHHH
Confidence            567889998778999999986542         36899999999999999999999999999999999999999999999


Q ss_pred             HHcCcceEEEEEEecc
Q psy4897         246 KRAGKLVELEVKYLRE  261 (774)
Q Consensus       246 k~~g~~V~L~V~R~~~  261 (774)
                      +++++.|+|+|.|...
T Consensus        90 k~~~~~v~L~V~r~~~  105 (111)
T d1ujua_          90 RSVGDTLTVLVCDGFE  105 (111)
T ss_dssp             SSCSSEEEECCCCCCC
T ss_pred             HcCCCeEEEEEEECCC
Confidence            9999999999876543

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.6e-13  Score=118.01  Aligned_cols=84  Identities=27%  Similarity=0.369  Sum_probs=74.2

Q ss_pred             eEEEEEeccCCCCcceEEeCCC------CCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc
Q psy4897         175 KRIIRVKKSENNGLGISIKGGK------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA  248 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~------~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~  248 (774)
                      ..+|++.|. ..+|||++.++.      ....+++|++|.++|||+++|+|++||+|++|||+++.+++|++++++|+++
T Consensus         3 ~~~V~L~k~-~~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~   81 (94)
T d1wf8a1           3 LFPVELEKD-EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNT   81 (94)
T ss_dssp             EEEEEEECB-TTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHC
T ss_pred             EEEEEEEeC-CCCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            567888885 568999998632      1245799999999999999999999999999999999999999999999999


Q ss_pred             CcceEEEEEEe
Q psy4897         249 GKLVELEVKYL  259 (774)
Q Consensus       249 g~~V~L~V~R~  259 (774)
                      +..++|+|.|.
T Consensus        82 ~~~v~L~V~R~   92 (94)
T d1wf8a1          82 KGNVRFVIGRE   92 (94)
T ss_dssp             CSEEEEEEEEE
T ss_pred             CCeEEEEEEeC
Confidence            99999999875

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1e-13  Score=121.63  Aligned_cols=83  Identities=23%  Similarity=0.435  Sum_probs=74.0

Q ss_pred             EEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEE
Q psy4897         176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELE  255 (774)
Q Consensus       176 r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~  255 (774)
                      .++++  ....+|||++.++.+...+++|..|.|++||++++ |++||+|++|||+++.+++|++++++|++++..++|+
T Consensus         8 ~tv~~--~g~~~~Gf~i~gg~d~~~~i~V~~v~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~   84 (94)
T d1vb7a_           8 LTVDV--AGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQ   84 (94)
T ss_dssp             EEEEE--CSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEE
T ss_pred             EEEEE--ECCCcCCEEEEeeccCCCCEEEEeccCCChhhhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            44444  34678999999998878899999999999999876 9999999999999999999999999999999999999


Q ss_pred             EEEecc
Q psy4897         256 VKYLRE  261 (774)
Q Consensus       256 V~R~~~  261 (774)
                      |.|...
T Consensus        85 V~R~~~   90 (94)
T d1vb7a_          85 LDRSSG   90 (94)
T ss_dssp             EECCCC
T ss_pred             EEECCC
Confidence            987543

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=7.4e-13  Score=115.37  Aligned_cols=84  Identities=18%  Similarity=0.190  Sum_probs=75.7

Q ss_pred             ceEEEEEeccC-CCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcce
Q psy4897         174 QKRIIRVKKSE-NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLV  252 (774)
Q Consensus       174 ~~r~V~L~k~~-~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V  252 (774)
                      +.+.+++.+.. ..+|||++.++.. ..+++|..|.++++|+++| |++||+|++|||+++.++++.+++.+|++++..+
T Consensus         6 e~~~v~l~k~~~~~~~Gf~i~~~~~-~~g~~V~~V~~~g~A~~~g-L~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v   83 (91)
T d1m5za_           6 ELHKVTLYKDSGMEDFGFSVADGLL-EKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKL   83 (91)
T ss_dssp             EEEEEEEECCTTCSSSSEEEEECTT-SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEE
T ss_pred             ceEEEEEEECCCCCceeEEEeccCC-CCCEEEEEECCCChhHhCc-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEE
Confidence            46788888865 4679999987654 4689999999999999998 9999999999999999999999999999999999


Q ss_pred             EEEEEEe
Q psy4897         253 ELEVKYL  259 (774)
Q Consensus       253 ~L~V~R~  259 (774)
                      +|+|.|.
T Consensus        84 ~L~v~R~   90 (91)
T d1m5za_          84 DLVISRN   90 (91)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9999886

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7.5e-13  Score=116.57  Aligned_cols=87  Identities=38%  Similarity=0.567  Sum_probs=76.8

Q ss_pred             cccceEEEEEeccCCCCcceEEeCCCCC------CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHH
Q psy4897         171 VENQKRIIRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA  244 (774)
Q Consensus       171 ~~~~~r~V~L~k~~~~~LGfsi~gg~~~------~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~  244 (774)
                      +..+..++.+.+. ..+|||++.++...      ..+++|+.|.+||||+++| |++||+|++|||+++.+++|.+++.+
T Consensus         5 ~~~~~~~v~l~k~-~~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~   82 (97)
T d1x5qa1           5 IEEEELTLTILRQ-TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEA   82 (97)
T ss_dssp             CCCEEEEEEEECS-SSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             cCCeEEEEEEEeC-CCeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhc-ccCCCEEEEECCEECCCCCHHHHHHH
Confidence            4456778888885 56899999876532      4579999999999999998 99999999999999999999999999


Q ss_pred             HHHcCcceEEEEEEe
Q psy4897         245 LKRAGKLVELEVKYL  259 (774)
Q Consensus       245 Lk~~g~~V~L~V~R~  259 (774)
                      |++++..++|+|.|.
T Consensus        83 l~~~~~~v~l~v~R~   97 (97)
T d1x5qa1          83 LRGAGTAVQMRVWRE   97 (97)
T ss_dssp             HHSCCSEEEEEEEEC
T ss_pred             HhCCCCEEEEEEEEC
Confidence            999999999999874

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.4e-13  Score=119.46  Aligned_cols=85  Identities=27%  Similarity=0.441  Sum_probs=75.1

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc--Ccc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GKL  251 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~--g~~  251 (774)
                      +...|.+.+. ..+|||.+.++.+...+++|..|.+++||+++|+|++||+|++|||++|.+++|++++++|+++  +..
T Consensus         9 ~~~~V~l~k~-~~glG~~i~gg~~~~~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~~   87 (103)
T d1uepa_           9 KELDVHLRRM-ESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQ   87 (103)
T ss_dssp             EEECCEEESS-SSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTE
T ss_pred             EEEEEEEEeC-CceEeEEEEecccCCCcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCE
Confidence            4556778775 5679999999888788899999999999999999999999999999999999999999999975  356


Q ss_pred             eEEEEEEe
Q psy4897         252 VELEVKYL  259 (774)
Q Consensus       252 V~L~V~R~  259 (774)
                      |+|+|.|.
T Consensus        88 v~l~v~r~   95 (103)
T d1uepa_          88 VNLTVRRK   95 (103)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEeC
Confidence            88888774

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.6e-13  Score=115.73  Aligned_cols=81  Identities=31%  Similarity=0.480  Sum_probs=74.0

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEE
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVEL  254 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L  254 (774)
                      +|.+++.+. ..+|||++.++.. ..+++|..|.+|+||+++| |++||+|++|||++|.+++|++++++|++++..++|
T Consensus         4 Pr~v~l~k~-~~g~Gf~i~~~~~-~~~~~V~~V~~g~~A~~aG-l~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~~~v~L   80 (91)
T d1g9oa_           4 PRLCCLEKG-PNGYGFHLHGEKG-KLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRL   80 (91)
T ss_dssp             CEEEEEECB-TTBCCEEEEECTT-CSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEE
T ss_pred             CEEEEEEEC-CCeeeEEEEecCC-CCCEEEEEEcCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            688999986 5679999988643 5689999999999999998 999999999999999999999999999999999999


Q ss_pred             EEEE
Q psy4897         255 EVKY  258 (774)
Q Consensus       255 ~V~R  258 (774)
                      +|.+
T Consensus        81 ~v~~   84 (91)
T d1g9oa_          81 LVVD   84 (91)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9875

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.8e-13  Score=120.46  Aligned_cols=87  Identities=24%  Similarity=0.353  Sum_probs=77.5

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC---CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK  250 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~---~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~  250 (774)
                      +.++|+|.|. ..+|||.+.++.+.   ..++||..|.+++||+++|+|++||+|++|||+++.+++|++++++|++++.
T Consensus         8 ~~~~V~l~k~-~~glG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~   86 (110)
T d1um1a_           8 YVFTVELERG-PSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGK   86 (110)
T ss_dssp             CEEEEEEECC-TTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCS
T ss_pred             CEEEEEEEEC-CCCCCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4789999986 46799999887543   3579999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEecc
Q psy4897         251 LVELEVKYLRE  261 (774)
Q Consensus       251 ~V~L~V~R~~~  261 (774)
                      .+.|+|.|...
T Consensus        87 ~v~l~v~r~~~   97 (110)
T d1um1a_          87 KMRFLVAKSDV   97 (110)
T ss_dssp             EEEEEEECCCH
T ss_pred             eEEEEEEeCCC
Confidence            99999987543

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.8e-13  Score=119.54  Aligned_cols=87  Identities=31%  Similarity=0.454  Sum_probs=76.6

Q ss_pred             ccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcc
Q psy4897         172 ENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKL  251 (774)
Q Consensus       172 ~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~  251 (774)
                      ....+.+.+.+....+|||++.++.+...+++|..|.+++||+++| |++||+|++|||+++.+++|++++++|+.++ .
T Consensus         6 ~~~~~~v~i~~~~~~glG~~i~~g~~~~~gi~V~~V~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~-~   83 (101)
T d1x5na1           6 ENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSR-S   83 (101)
T ss_dssp             CCSSEEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHCS-S
T ss_pred             CCccEEEEEEeeCCCcccEEEeccCCCCCCEEEEEECCCChHHhCC-CCcccEEEEECCEECCCCCHHHHHHHHhCCC-C
Confidence            3457888888877889999999988878899999999999999987 9999999999999999999999999999875 4


Q ss_pred             eEEEEEEec
Q psy4897         252 VELEVKYLR  260 (774)
Q Consensus       252 V~L~V~R~~  260 (774)
                      ++|+|.+..
T Consensus        84 ~~l~v~~~~   92 (101)
T d1x5na1          84 LTISIVAAA   92 (101)
T ss_dssp             EEEEECSST
T ss_pred             EEEEEEECC
Confidence            677776543

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=7.9e-13  Score=119.72  Aligned_cols=88  Identities=34%  Similarity=0.522  Sum_probs=77.9

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC-------CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN-------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK  246 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~-------~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk  246 (774)
                      +.+.|.|.+....+|||.+.++...       ..+++|.+|.++++|+++|.|++||+|++|||++|.+++|++++++|+
T Consensus        10 ~~~~V~l~r~~~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~   89 (114)
T d1uewa_          10 QTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIK   89 (114)
T ss_dssp             CCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHH
T ss_pred             eeEEEEEEeCCCCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHHH
Confidence            4678888888788999999986532       357999999999999999999999999999999999999999999999


Q ss_pred             HcCcceEEEEEEecc
Q psy4897         247 RAGKLVELEVKYLRE  261 (774)
Q Consensus       247 ~~g~~V~L~V~R~~~  261 (774)
                      +++..|+|+|.|...
T Consensus        90 ~~~~~v~l~V~r~~~  104 (114)
T d1uewa_          90 DAGLSVTLRIIPQEE  104 (114)
T ss_dssp             HTTTEEEEEECCCSC
T ss_pred             cCCCeEEEEEEeCCC
Confidence            998999999987533

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.6e-13  Score=116.64  Aligned_cols=83  Identities=40%  Similarity=0.605  Sum_probs=74.1

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC---CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK  250 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~---~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~  250 (774)
                      +.++|++.|. ..+|||++.++.+.   ..+++|++|.++++|+++|.|++||+|++|||+++.+++|++++++|+++++
T Consensus         2 ~~~~V~l~K~-~~~lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~   80 (88)
T d2fnea1           2 QCKSITLERG-PDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKG   80 (88)
T ss_dssp             EEEEEEECCB-TTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             eEEEEEEEeC-CCccCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4688999885 46799999876432   3579999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEE
Q psy4897         251 LVELEVK  257 (774)
Q Consensus       251 ~V~L~V~  257 (774)
                      .++|+|.
T Consensus        81 ~v~L~Vl   87 (88)
T d2fnea1          81 TVTLMVL   87 (88)
T ss_dssp             SEEEEEE
T ss_pred             cEEEEEE
Confidence            9999885

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.1e-12  Score=118.58  Aligned_cols=88  Identities=26%  Similarity=0.334  Sum_probs=78.1

Q ss_pred             cccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc--
Q psy4897         171 VENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--  248 (774)
Q Consensus       171 ~~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~--  248 (774)
                      ...+...+++.+. ..+|||.+.++.+...+++|..|.++++|+++|.|++||+|++|||++|.+++|++++++|+..  
T Consensus        16 ~~~~~~~v~l~k~-~~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~   94 (123)
T d1ueqa_          16 LKGTFLSTTLKKS-NMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPI   94 (123)
T ss_dssp             CCSEEEEEEEECC-TTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCT
T ss_pred             cCCeEEEEEEEEC-CCeeCEEEEeecCCCCCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            3445667777775 5789999999888788999999999999999999999999999999999999999999999985  


Q ss_pred             CcceEEEEEEe
Q psy4897         249 GKLVELEVKYL  259 (774)
Q Consensus       249 g~~V~L~V~R~  259 (774)
                      +..|.|+|.|.
T Consensus        95 g~~v~L~v~R~  105 (123)
T d1ueqa_          95 GQSVNLVLCRG  105 (123)
T ss_dssp             TCEEEEEEEES
T ss_pred             CCEEEEEEEcC
Confidence            57899999874

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.1e-12  Score=119.54  Aligned_cols=89  Identities=31%  Similarity=0.434  Sum_probs=78.1

Q ss_pred             cccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897         171 VENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK  250 (774)
Q Consensus       171 ~~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~  250 (774)
                      ...+++.+++.+. ..+|||.+.++.+  .++||+.|.+++||+++| |++||+|++|||++|.+++|++++++|+.++.
T Consensus        16 ~~~~~r~v~l~k~-~~glG~~i~gg~~--~gi~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~   91 (117)
T d1uita_          16 YVEEPRHVKVQKG-SEPLGISIVSGEK--GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCD   91 (117)
T ss_dssp             CSCCCEEEEEECS-SCCCCEEEEECTT--SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSCCS
T ss_pred             CCCCCEEEEEEeC-CCccCEEEEccCC--CCEEEEEEecCChHHhCC-CCCCCEeeeECCcccCCCCHHHHHHHHHCCCC
Confidence            3446789999885 5789999998743  589999999999999986 99999999999999999999999999999999


Q ss_pred             ceEEEEEEecccc
Q psy4897         251 LVELEVKYLREVT  263 (774)
Q Consensus       251 ~V~L~V~R~~~~~  263 (774)
                      .|+|+|.|.+...
T Consensus        92 ~v~l~v~~~p~~~  104 (117)
T d1uita_          92 TITILAQYNPHVH  104 (117)
T ss_dssp             EEEEEECCCSCCC
T ss_pred             eEEEEEEECCcce
Confidence            9999998765543

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.6e-13  Score=120.97  Aligned_cols=88  Identities=31%  Similarity=0.508  Sum_probs=79.5

Q ss_pred             cceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcce
Q psy4897         173 NQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLV  252 (774)
Q Consensus       173 ~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V  252 (774)
                      .+..++++.+. ..+|||++.++.+...+++|..|.++++|+++|.|++||+|++|||+++.+++|++++++|+++++.|
T Consensus        10 ~e~~~v~l~k~-~~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~~~v   88 (103)
T d1wfva_          10 FDYFTVDMEKG-AKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRV   88 (103)
T ss_dssp             SCCEECCEECC-TTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEE
T ss_pred             ceEEEEEEEeC-CCccCEEEEeeccCCCCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCEE
Confidence            35677888875 56899999998887788999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecc
Q psy4897         253 ELEVKYLRE  261 (774)
Q Consensus       253 ~L~V~R~~~  261 (774)
                      .|+|.|...
T Consensus        89 ~l~v~R~~~   97 (103)
T d1wfva_          89 RLLLKRGTG   97 (103)
T ss_dssp             CEEEECTTC
T ss_pred             EEEEEECCC
Confidence            999987544

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.37  E-value=1.2e-12  Score=114.08  Aligned_cols=74  Identities=19%  Similarity=0.281  Sum_probs=67.5

Q ss_pred             CcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHH-hcCceEEEEeeecc
Q psy4897          32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK-RAGKVVELEVGVGY  106 (774)
Q Consensus        32 ~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk-~ag~~V~L~V~R~~  106 (774)
                      .|+|+.|....+...+++|..|.+||||+++| |++||+|++|||+++.++++.+++.+|+ ..++.|+|+|.|+.
T Consensus         5 ~GiGi~i~~~~~~~~~v~V~~v~~gsPA~~AG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g   79 (92)
T d1fc6a3           5 TGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPG   79 (92)
T ss_dssp             BBCSEEEEECTTCSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETT
T ss_pred             EEEEEEEEEcCCCCceEEEEEecCCCChhHHh-hHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECC
Confidence            58999998766666789999999999999998 9999999999999999999999999998 57889999999875

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.7e-12  Score=115.56  Aligned_cols=83  Identities=31%  Similarity=0.407  Sum_probs=70.7

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCC--------CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKEN--------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK  246 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~--------~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk  246 (774)
                      .+.+.+......+|||++.++.+.        ..|+||+.|.+++||++  .|++||+|++|||+++.+++|++++++|+
T Consensus        10 ~~~v~v~~~~~~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~--~L~~GD~Il~VNg~~v~~~t~~eav~~l~   87 (103)
T d2h3la1          10 KQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLK   87 (103)
T ss_dssp             EEEEEEEEECSSSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTT--TCCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             cEEEEEEEccCCCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHh--ccCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            344445444467899999987543        35899999999999985  49999999999999999999999999999


Q ss_pred             HcCcceEEEEEEe
Q psy4897         247 RAGKLVELEVKYL  259 (774)
Q Consensus       247 ~~g~~V~L~V~R~  259 (774)
                      ++++.++|+|.|.
T Consensus        88 ~~~~~v~L~V~R~  100 (103)
T d2h3la1          88 TFQNTVELIIVRE  100 (103)
T ss_dssp             HCCSEEEEEEEEE
T ss_pred             hCCCeEEEEEEEE
Confidence            9999999999875

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=1.4e-12  Score=116.27  Aligned_cols=86  Identities=31%  Similarity=0.585  Sum_probs=76.4

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC------CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR  247 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~------~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~  247 (774)
                      +.+++.+.|....+|||++.++.+.      ..+++|.+|.+||||+ ++ |++||+|++|||+++.+++|++++++|++
T Consensus         7 e~~tV~l~k~~~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~-~~-L~~GD~Il~INg~~v~~~~~~ev~~ll~~   84 (104)
T d2csja1           7 EQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQLRK   84 (104)
T ss_dssp             EEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHHHH
T ss_pred             ccEEEEEEeCCCCCcCEEEEcccCCCccccCCCCEEEEEECCCChhh-cC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            4678999998888999999987643      3579999999999997 44 99999999999999999999999999999


Q ss_pred             cCcceEEEEEEecc
Q psy4897         248 AGKLVELEVKYLRE  261 (774)
Q Consensus       248 ~g~~V~L~V~R~~~  261 (774)
                      ++..+.|+|.|.+.
T Consensus        85 ~~~~v~l~V~R~~~   98 (104)
T d2csja1          85 SGKIAAIVVKRPRK   98 (104)
T ss_dssp             SCSEEEEEEEEEEE
T ss_pred             CCCEEEEEEEeCCC
Confidence            99999999998654

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=1.9e-12  Score=118.83  Aligned_cols=90  Identities=21%  Similarity=0.337  Sum_probs=78.1

Q ss_pred             ccceEEEEEeccCCCCcceEEeCCCCC----CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH
Q psy4897         172 ENQKRIIRVKKSENNGLGISIKGGKEN----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR  247 (774)
Q Consensus       172 ~~~~r~V~L~k~~~~~LGfsi~gg~~~----~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~  247 (774)
                      ..+.+.|.|.+....+|||.+.++...    ..+++|.+|.|+++|+++|.|++||+|++|||+++.+++|++++++|++
T Consensus        13 ~~~~~ev~l~k~~~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~   92 (122)
T d1v5qa_          13 HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRD   92 (122)
T ss_dssp             CEEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHH
T ss_pred             cceeEEEEEecCCCCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHc
Confidence            345678889998888999999987532    4679999999999999999999999999999999999999999999999


Q ss_pred             cCcceEEEEEEecc
Q psy4897         248 AGKLVELEVKYLRE  261 (774)
Q Consensus       248 ~g~~V~L~V~R~~~  261 (774)
                      ++..+.|++++...
T Consensus        93 ~~~~~~l~l~~~~~  106 (122)
T d1v5qa_          93 SSITSKVTLEIEFD  106 (122)
T ss_dssp             HTTTTCEEEEEEEE
T ss_pred             CCCceEEEEEEecc
Confidence            88777777765443

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=1.9e-12  Score=116.62  Aligned_cols=83  Identities=29%  Similarity=0.425  Sum_probs=73.0

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEE
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVEL  254 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L  254 (774)
                      ..+|++.+...++|||++.++.+ ..+++|+.|.+++||+++|.|++||+|++|||+++.+++|++++++|+.++..+.+
T Consensus         2 i~~V~l~k~~~~glG~~i~~~~~-~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~~~~   80 (112)
T d1qaua_           2 VISVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHV   80 (112)
T ss_dssp             EEEEEEECBTTTBTSEEEEECSS-SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEE
T ss_pred             eEEEEEEECCCCcEeEEEEeecC-CCCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCCcEE
Confidence            46788988888899999998754 57899999999999999999999999999999999999999999999997666555


Q ss_pred             EEEE
Q psy4897         255 EVKY  258 (774)
Q Consensus       255 ~V~R  258 (774)
                      .+.+
T Consensus        81 ~l~~   84 (112)
T d1qaua_          81 VLIL   84 (112)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=5.8e-13  Score=119.28  Aligned_cols=86  Identities=35%  Similarity=0.567  Sum_probs=75.0

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhc-cCCCCCCEEEEECCeecCCCCHHHHHHHHHHcC---
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQT-EQLYVGDAILSVNGEDLREATHDEAVKALKRAG---  249 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~a-G~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g---  249 (774)
                      ...++++.+...++|||++.++.+...+++|++|.+++||+++ |+|++||+|++|||+++.+++|++++++|++++   
T Consensus         8 ~~~~v~l~~~~~g~lG~~l~gg~d~~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~~~~   87 (106)
T d2cs5a1           8 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERH   87 (106)
T ss_dssp             CCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCC
T ss_pred             cEEEEEEEeCCCCCccEEEEeeecCCCCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            4678889898888899999998877788999999999999985 679999999999999999999999999999743   


Q ss_pred             -cceEEEEEEe
Q psy4897         250 -KLVELEVKYL  259 (774)
Q Consensus       250 -~~V~L~V~R~  259 (774)
                       ..+.|+|++.
T Consensus        88 ~~~v~L~vrp~   98 (106)
T d2cs5a1          88 SGELMLLVRPN   98 (106)
T ss_dssp             SSCEEEEEECC
T ss_pred             CcEEEEEECCC
Confidence             3577777643

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.8e-12  Score=109.36  Aligned_cols=76  Identities=18%  Similarity=0.280  Sum_probs=68.4

Q ss_pred             EEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEE
Q psy4897         178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK  257 (774)
Q Consensus       178 V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~  257 (774)
                      +++.+. ..+|||++.++    .+++|.+|.++|||+++| |++||+|++|||+++.+++|.+++..|++++..++|+|.
T Consensus         1 v~l~r~-~~g~Gf~l~~~----~~~~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~v~L~v~   74 (77)
T d2f5ya1           1 ITIPRG-KDGFGFTICCD----SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVW   74 (77)
T ss_dssp             EEEECB-TTBTSEEEECS----SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEE
T ss_pred             CEEecC-CCcccEEEECC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEE
Confidence            356665 56799999864    579999999999999998 999999999999999999999999999999999999998


Q ss_pred             Ee
Q psy4897         258 YL  259 (774)
Q Consensus       258 R~  259 (774)
                      |.
T Consensus        75 R~   76 (77)
T d2f5ya1          75 RM   76 (77)
T ss_dssp             EC
T ss_pred             EE
Confidence            74

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=6e-13  Score=122.84  Aligned_cols=85  Identities=24%  Similarity=0.302  Sum_probs=74.5

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc--C
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--G   95 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a--g   95 (774)
                      ..++++|++. ++..||||.|..+   ..+++|..|.|+|||+++|+|++||+|++|||++|.+++|++++.+|+.+  +
T Consensus        25 ~~~~~~v~l~-~g~~GlG~~i~~~---~~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g  100 (126)
T d1wifa_          25 LNKVIQTKLT-VGNLGLGLVVIQN---GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIG  100 (126)
T ss_dssp             CCCEEEEEEE-CCTTCCCCCEEEE---TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSS
T ss_pred             CCcEEEEEEe-eCCCcEEEEEEec---CCcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCC
Confidence            4567777774 5667899999865   34699999999999999999999999999999999999999999999985  5


Q ss_pred             ceEEEEeeecc
Q psy4897          96 KVVELEVGVGY  106 (774)
Q Consensus        96 ~~V~L~V~R~~  106 (774)
                      ..|+|+|.|..
T Consensus       101 ~~v~L~v~R~~  111 (126)
T d1wifa_         101 TVLQIKAYRGF  111 (126)
T ss_dssp             CEEEEEEESSS
T ss_pred             CEEEEEEEeCC
Confidence            79999998864

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.4e-12  Score=118.68  Aligned_cols=89  Identities=27%  Similarity=0.355  Sum_probs=79.1

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC-CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcce
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN-KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLV  252 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~-~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V  252 (774)
                      .++.|++.|....+|||.+.++.+. ..+++|..|.++++|+++|.|++||+|++|||++|.+++|++++++|++++..|
T Consensus        15 ~p~~V~l~k~~~~~lGi~i~~~~~~~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~~~v   94 (117)
T d1v62a_          15 GPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKV   94 (117)
T ss_dssp             SSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEE
T ss_pred             CCEEEEEEcCCCCCcCEEEEeeccCCCCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcCCCcE
Confidence            3678999988778999999976543 457899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeccc
Q psy4897         253 ELEVKYLREV  262 (774)
Q Consensus       253 ~L~V~R~~~~  262 (774)
                      +|+|.|....
T Consensus        95 ~l~v~~~~~~  104 (117)
T d1v62a_          95 RLEILPVPQS  104 (117)
T ss_dssp             EEEECCBTTB
T ss_pred             EEEEEECCCC
Confidence            9999875543

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.2e-12  Score=110.82  Aligned_cols=80  Identities=25%  Similarity=0.400  Sum_probs=72.1

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc-CcceE
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA-GKLVE  253 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~-g~~V~  253 (774)
                      +|.+.+.+...++|||.+...   ..+++|.+|.++|||+++| |++||+|++|||+++.++++++++++|++. +..++
T Consensus         3 pr~v~l~k~~~~~lG~~l~~~---~~g~~V~~v~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v~   78 (85)
T d1w9ea1           3 PREVILCKDQDGKIGLRLKSI---DNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKIT   78 (85)
T ss_dssp             CEEEEEECCTTSCCSEEEEEE---TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEE
T ss_pred             CEEEEEEeCCCCCEeEEEEeC---CCCEEEEEECCCCHHHHcC-CCCccEEEEECCEEeCCCCHHHHHHHHhcCCCCEEE
Confidence            678899998888999999875   3579999999999999998 999999999999999999999999999984 57788


Q ss_pred             EEEEE
Q psy4897         254 LEVKY  258 (774)
Q Consensus       254 L~V~R  258 (774)
                      |+|++
T Consensus        79 l~v~~   83 (85)
T d1w9ea1          79 MTIRD   83 (85)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            88864

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.8e-13  Score=122.11  Aligned_cols=88  Identities=20%  Similarity=0.297  Sum_probs=72.0

Q ss_pred             CCCCcEEEEEEeec-CCcccEEEEccCC--CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897          17 SSRDFYSENYKYTE-NNGLGISIKGGKE--NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR   93 (774)
Q Consensus        17 ~s~~~~~V~l~rk~-~~gLGfsI~GG~e--~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~   93 (774)
                      ...++++|++.++. ..+|||+|.++.+  ...++||.+|.||+||+++|+|++||+|++|||++|.+  +.+++.+++.
T Consensus        16 ~~~e~~~V~l~k~~~~~~lG~~i~~~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~--~~~~~~~l~~   93 (124)
T d1wh1a_          16 EELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTS   93 (124)
T ss_dssp             SSCEECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTC
T ss_pred             CCceeEEEEEEECCCCCcccEEEEecCCCCCCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECCC--HHHHHHHHhh
Confidence            34456778887754 5799999998865  35789999999999999999999999999999999986  4566777776


Q ss_pred             c-CceEEEEeeecc
Q psy4897          94 A-GKVVELEVGVGY  106 (774)
Q Consensus        94 a-g~~V~L~V~R~~  106 (774)
                      + +..|.|.|.|+.
T Consensus        94 ~~~~~v~l~v~r~~  107 (124)
T d1wh1a_          94 EENKNFSLLIARPE  107 (124)
T ss_dssp             SSCCSCCEEEEECS
T ss_pred             CCCCcEEEEEEeCC
Confidence            4 667888887754

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=3.2e-12  Score=112.34  Aligned_cols=83  Identities=28%  Similarity=0.405  Sum_probs=70.7

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCC--CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc---
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA---  248 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~--~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~---  248 (774)
                      ..+++++.+.  .+|||++.+|.+.  ..+++|+.|.++++|+++|.|++||+|++|||+++.+++|++++++|+++   
T Consensus         8 ~~~~v~~~~~--~glG~~i~gg~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~   85 (96)
T d1wi4a1           8 AFRVITVTKE--TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLR   85 (96)
T ss_dssp             TEEEEEECCS--SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCS
T ss_pred             cEEEEEecCC--CccCEEEEeccCCCCCCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCC
Confidence            4677777763  5799999987653  45789999999999999999999999999999999999999999999985   


Q ss_pred             -CcceEEEEEE
Q psy4897         249 -GKLVELEVKY  258 (774)
Q Consensus       249 -g~~V~L~V~R  258 (774)
                       +..+.|.+.|
T Consensus        86 ~~~~vel~~~R   96 (96)
T d1wi4a1          86 SESPWEIAFIR   96 (96)
T ss_dssp             SSSCEEEEEEC
T ss_pred             CCCeEEEEEEC
Confidence             4567777654

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.33  E-value=1.5e-12  Score=114.88  Aligned_cols=84  Identities=27%  Similarity=0.399  Sum_probs=72.8

Q ss_pred             eEEEEEeccC-CCCcceEEeCCCC---------CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHH
Q psy4897         175 KRIIRVKKSE-NNGLGISIKGGKE---------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA  244 (774)
Q Consensus       175 ~r~V~L~k~~-~~~LGfsi~gg~~---------~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~  244 (774)
                      .|.|++.+.. ..+|||++.+|..         ...+++|+.|.|++||+++|.|++||+|++|||+++.+++|++++++
T Consensus         3 ~r~V~L~k~~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~   82 (98)
T d1rzxa_           3 HRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDM   82 (98)
T ss_dssp             CEEEEEECCCSSSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             cEEEEEEECCCCCcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHH
Confidence            4567777764 5679999987542         23479999999999999999999999999999999999999999999


Q ss_pred             HHHcCcceEEEEEE
Q psy4897         245 LKRAGKLVELEVKY  258 (774)
Q Consensus       245 Lk~~g~~V~L~V~R  258 (774)
                      |++++..++|+|++
T Consensus        83 l~~~~~~v~l~v~p   96 (98)
T d1rzxa_          83 MVANSSNLIITVKP   96 (98)
T ss_dssp             HHHTCTEEEEEEEC
T ss_pred             HHcCCCeEEEEEEe
Confidence            99999999999864

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=3.9e-12  Score=112.66  Aligned_cols=81  Identities=26%  Similarity=0.445  Sum_probs=74.6

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE  253 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~  253 (774)
                      ..+++.+.|....+|||.++++   ..+++|++|.++|+|+++|.|++||+|++|||+++.+++|++++++|+++++.|+
T Consensus        18 ~i~~V~l~k~~~~~lG~~v~~~---~~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v~   94 (100)
T d1va8a1          18 TVKIVRIEKARDIPLGATVRNE---MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLT   94 (100)
T ss_dssp             ECEEEEEEECTTCCCCEEEEEC---SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEE
T ss_pred             eEEEEEEEeCCCCCccEEEEec---CCCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCCCeEE
Confidence            4678999998888999999875   4689999999999999999899999999999999999999999999999988999


Q ss_pred             EEEE
Q psy4897         254 LEVK  257 (774)
Q Consensus       254 L~V~  257 (774)
                      |+|.
T Consensus        95 L~v~   98 (100)
T d1va8a1          95 FVLI   98 (100)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9885

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4e-12  Score=112.34  Aligned_cols=84  Identities=30%  Similarity=0.392  Sum_probs=72.3

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCC----CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcC
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKE----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG  249 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~----~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g  249 (774)
                      +.+.|.+.+.+..+|||++.++.+    ...+++|++|.+++||+++|.|++||+|++|||+++.+++|++++++|++++
T Consensus         8 e~~~V~l~~~~~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~~   87 (99)
T d1x5ra1           8 ETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAA   87 (99)
T ss_dssp             EEEEEEECCCTTTCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHHH
T ss_pred             eeEEEEEEcCCCCCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            466788888888899999998753    3578999999999999999999999999999999999999999999999854


Q ss_pred             cc--eEEEEE
Q psy4897         250 KL--VELEVK  257 (774)
Q Consensus       250 ~~--V~L~V~  257 (774)
                      ..  ++|.+.
T Consensus        88 ~~~~l~l~v~   97 (99)
T d1x5ra1          88 LAHKVVLEVE   97 (99)
T ss_dssp             TTTCEEEEEE
T ss_pred             CCCEEEEEEE
Confidence            44  455543

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=1.3e-12  Score=116.46  Aligned_cols=77  Identities=27%  Similarity=0.443  Sum_probs=70.8

Q ss_pred             CCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecc
Q psy4897         184 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE  261 (774)
Q Consensus       184 ~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~  261 (774)
                      ...+|||++.++.+...+++|..|.++++|++++ |++||+|++|||+++.+++|++++++|++++..|.|+|.|...
T Consensus        13 g~~g~Gf~i~gg~d~~~~v~V~~v~~g~~a~~~~-L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~v~L~v~R~~~   89 (103)
T d1wf7a_          13 GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASA   89 (103)
T ss_dssp             SSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEECCCSC
T ss_pred             CCCCccEEEEcccCCCCCEEEEecCCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            4678999999998888899999999999999765 9999999999999999999999999999999999999987544

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=4.1e-12  Score=117.27  Aligned_cols=84  Identities=32%  Similarity=0.511  Sum_probs=71.9

Q ss_pred             EEEEEeccCCCCcceEEeCCCCC----CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc---
Q psy4897         176 RIIRVKKSENNGLGISIKGGKEN----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA---  248 (774)
Q Consensus       176 r~V~L~k~~~~~LGfsi~gg~~~----~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~---  248 (774)
                      ..+.+.+....+|||++.++.+.    ..+++|..|.++++|+++|+|++||+|++|||+++.+++|++++++||++   
T Consensus        27 ~~v~l~~~~~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~  106 (127)
T d1wg6a_          27 LEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSM  106 (127)
T ss_dssp             EEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEccCCCCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcccc
Confidence            34556666677899999876543    35789999999999999999999999999999999999999999999975   


Q ss_pred             ----CcceEEEEEEe
Q psy4897         249 ----GKLVELEVKYL  259 (774)
Q Consensus       249 ----g~~V~L~V~R~  259 (774)
                          ...|+|+|.|.
T Consensus       107 ~~~~~~~V~L~V~R~  121 (127)
T d1wg6a_         107 EGNIRGMIQLVILRR  121 (127)
T ss_dssp             HHHHTCEEEEEEEEC
T ss_pred             cCCCCCEEEEEEeeC
Confidence                46899999874

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.7e-12  Score=111.90  Aligned_cols=82  Identities=21%  Similarity=0.355  Sum_probs=65.5

Q ss_pred             CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc--C
Q psy4897          18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--G   95 (774)
Q Consensus        18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a--g   95 (774)
                      ..++++|++.|.. .+|||+|.++.+.   ..|..+   .+|+.+++|++||+|++|||++|.+++|++|+++||++  +
T Consensus         8 ~~e~~~v~l~k~~-~glGf~i~g~~~~---~~~~~~---~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~g   80 (96)
T d1ujva_           8 QAELMTLTIVKGA-QGFGFTIADSPTG---QRVKQI---LDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIG   80 (96)
T ss_dssp             CCCCEEEEEECCS-SSSSEEEEEETTE---EEEEEE---SCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTT
T ss_pred             CceEEEEEEEeCC-CcccEEEEeeCCC---ceEeec---cCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCC
Confidence            4578899997755 6899999988543   333332   34555567999999999999999999999999999985  6


Q ss_pred             ceEEEEeeecc
Q psy4897          96 KVVELEVGVGY  106 (774)
Q Consensus        96 ~~V~L~V~R~~  106 (774)
                      ..|+|+|.|..
T Consensus        81 ~~v~l~v~R~~   91 (96)
T d1ujva_          81 SETSLIIHRGS   91 (96)
T ss_dssp             SEEEEEEECCS
T ss_pred             CEEEEEEEECC
Confidence            79999998854

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6.6e-12  Score=107.88  Aligned_cols=78  Identities=21%  Similarity=0.331  Sum_probs=66.5

Q ss_pred             EEEeccCCCCcceEEeCCCC--CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEE
Q psy4897         178 IRVKKSENNGLGISIKGGKE--NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELE  255 (774)
Q Consensus       178 V~L~k~~~~~LGfsi~gg~~--~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~  255 (774)
                      |.+.|....+|||++..+..  ...+++|.+|.|++||+++|.|++||+|++|||+++.+++|++++++|++++..+.++
T Consensus         2 V~l~k~~g~~LGi~i~~~~~~~~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~v~   81 (85)
T d1x45a1           2 VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVK   81 (85)
T ss_dssp             EEEECCTTSCCCEEEECCTTTSSSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEEE
T ss_pred             eEEEeCCCCccCEEEEeCCCCCCCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEE
Confidence            56778778899999975322  2458999999999999999999999999999999999999999999999866554443

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.1e-12  Score=114.65  Aligned_cols=85  Identities=40%  Similarity=0.600  Sum_probs=74.1

Q ss_pred             ceEEEEEeccC-CCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcce
Q psy4897         174 QKRIIRVKKSE-NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLV  252 (774)
Q Consensus       174 ~~r~V~L~k~~-~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V  252 (774)
                      +.+.+.|.+.. ..+|||.+.++.+...+++|+.|.+++||+++| |++||+|++|||++|.+++|++++++|+..++ +
T Consensus         8 ~~~~v~l~r~~~~~glG~~i~gg~~~~~~i~V~~v~~gg~A~~~g-L~~GD~Il~ING~~v~~~~~~~v~~ll~~~~~-~   85 (101)
T d1ueza_           8 EVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGSKK-L   85 (101)
T ss_dssp             CCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSSSS-C
T ss_pred             CEEEEEEEECCCCCeeCEEEEecccCCCCEEEEEECCCChHHhcC-CCCCcEEEEECCEECCCCCHHHHHHHHhcCCC-E
Confidence            46788887764 467999999988877899999999999999998 99999999999999999999999999998754 6


Q ss_pred             EEEEEEec
Q psy4897         253 ELEVKYLR  260 (774)
Q Consensus       253 ~L~V~R~~  260 (774)
                      .|+|.+..
T Consensus        86 ~l~V~~~~   93 (101)
T d1ueza_          86 VLSVYSAG   93 (101)
T ss_dssp             CEEECCCC
T ss_pred             EEEEEECC
Confidence            67776543

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.6e-12  Score=114.26  Aligned_cols=76  Identities=36%  Similarity=0.458  Sum_probs=67.8

Q ss_pred             CCCcceEEeCCCCC-----CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEe
Q psy4897         185 NNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYL  259 (774)
Q Consensus       185 ~~~LGfsi~gg~~~-----~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~  259 (774)
                      ..+|||.+.++.+.     ..+++|..|.++++|+++|.|++||+|++|||+++.+++|++++++|++++..++|+|+|.
T Consensus        29 g~glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i~~~~~~v~l~v~r~  108 (117)
T d1ujda_          29 GNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLD  108 (117)
T ss_dssp             CCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEESS
T ss_pred             CcccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCeEEEEEEEC
Confidence            35799999876532     3479999999999999999999999999999999999999999999999888999999875


Q ss_pred             c
Q psy4897         260 R  260 (774)
Q Consensus       260 ~  260 (774)
                      .
T Consensus       109 ~  109 (117)
T d1ujda_         109 L  109 (117)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.1e-11  Score=104.98  Aligned_cols=74  Identities=22%  Similarity=0.459  Sum_probs=65.3

Q ss_pred             EEEEEecc-CCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEE
Q psy4897         176 RIIRVKKS-ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVEL  254 (774)
Q Consensus       176 r~V~L~k~-~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L  254 (774)
                      +++.+.+. ...+|||++.++       +|.+|.||++|+++| |++||+|++|||+++.+++|++++++|+++++.++|
T Consensus         2 ~tv~l~r~~~~~~lGf~i~~g-------~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~l   73 (79)
T d1y7na1           2 TTVLIRRPDLRYQLGFSVQNG-------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHM   73 (79)
T ss_dssp             EEEEEEESSTTSCCCEEEETT-------EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEE
T ss_pred             EEEEEEcCCCCCCcCEEEECC-------EEEEEcCCCHHHHCC-CCCCCEEEEECCEEeCCCCHHHHHHHHHcCCCEEEE
Confidence            34555554 467899999875       799999999999976 999999999999999999999999999999999999


Q ss_pred             EEE
Q psy4897         255 EVK  257 (774)
Q Consensus       255 ~V~  257 (774)
                      +|.
T Consensus        74 ~vi   76 (79)
T d1y7na1          74 KTM   76 (79)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            885

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=3.3e-12  Score=115.19  Aligned_cols=80  Identities=29%  Similarity=0.372  Sum_probs=70.1

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc-Ccce
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA-GKLV  252 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~-g~~V  252 (774)
                      .+|.|+|.+. .++|||++.++    .+++|..|.+++||+++| |++||+|++|||++|.+++|++++++|+.+ +..+
T Consensus        15 ~pr~v~l~k~-~~g~Gf~i~g~----~~v~V~~V~~~spA~~~G-L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~~v   88 (111)
T d1vaea_          15 PPRGIHFTVE-EGDLGFTLRGN----TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEV   88 (111)
T ss_dssp             CCCCCCEECC-SSCCSCCEESS----SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEE
T ss_pred             CCEEEEEEEC-CCccCEEEECC----ccEEEEEEcCCChHHhcc-cCcccEEEEECCEEcCCCCHHHHHHHHHcCCCCeE
Confidence            3567888885 56899999874    579999999999999998 999999999999999999999999999986 5678


Q ss_pred             EEEEEEe
Q psy4897         253 ELEVKYL  259 (774)
Q Consensus       253 ~L~V~R~  259 (774)
                      +|+|.+.
T Consensus        89 ~l~v~~~   95 (111)
T d1vaea_          89 EMKVVSL   95 (111)
T ss_dssp             CEEEECE
T ss_pred             EEEEECC
Confidence            8888654

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.7e-12  Score=115.20  Aligned_cols=79  Identities=32%  Similarity=0.457  Sum_probs=68.1

Q ss_pred             EeccCCCCcceEEeCCCCC---CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc--CcceEE
Q psy4897         180 VKKSENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GKLVEL  254 (774)
Q Consensus       180 L~k~~~~~LGfsi~gg~~~---~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~--g~~V~L  254 (774)
                      +.+....+|||++.||.+.   ..++||..|.++++|+++|.|++||+|++|||+++.+++|++++++|+++  +..++|
T Consensus        24 ~~~~~~~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l  103 (108)
T d2cssa1          24 MPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEI  103 (108)
T ss_dssp             CSSSCSSCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEE
T ss_pred             EecCCCCCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEE
Confidence            3444577899999987543   35899999999999999999999999999999999999999999999974  567888


Q ss_pred             EEEE
Q psy4897         255 EVKY  258 (774)
Q Consensus       255 ~V~R  258 (774)
                      +|.|
T Consensus       104 ~v~R  107 (108)
T d2cssa1         104 IVSR  107 (108)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            8875

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=1e-11  Score=113.22  Aligned_cols=83  Identities=30%  Similarity=0.559  Sum_probs=70.7

Q ss_pred             eEEEEEeccCCCCcceEEeCCCCCC-CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc----C
Q psy4897         175 KRIIRVKKSENNGLGISIKGGKENK-MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA----G  249 (774)
Q Consensus       175 ~r~V~L~k~~~~~LGfsi~gg~~~~-~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~----g  249 (774)
                      .+.+.+.+  ..+|||.+.+|.+.. .+++|..|.++++|+++|.|++||+|++|||+++.+++|++++++|+++    +
T Consensus        19 v~~~~~~~--~~~lG~~i~gg~d~~~~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~   96 (118)
T d1v6ba_          19 VRLLRIKK--EGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGG   96 (118)
T ss_dssp             EEEEEEES--CSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTC
T ss_pred             EEEEEecC--CCCCCEEEEeeecCCCCCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCC
Confidence            44444433  468999999987654 4799999999999999999999999999999999999999999999963    6


Q ss_pred             cceEEEEEEe
Q psy4897         250 KLVELEVKYL  259 (774)
Q Consensus       250 ~~V~L~V~R~  259 (774)
                      ..|+|+|.|.
T Consensus        97 ~~V~L~v~r~  106 (118)
T d1v6ba_          97 DWIDLVVAVC  106 (118)
T ss_dssp             SEEEEEEECC
T ss_pred             CEEEEEEEeC
Confidence            6789999874

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=1.6e-12  Score=115.85  Aligned_cols=76  Identities=26%  Similarity=0.424  Sum_probs=70.5

Q ss_pred             CCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEec
Q psy4897         184 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLR  260 (774)
Q Consensus       184 ~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~  260 (774)
                      ....|||++.++.+...+++|+.|.++++|++++ |++||+|++|||++|.+++|++++++|+.++..|+|+|.|..
T Consensus        13 g~~~~Gf~l~gg~d~~~~i~V~~v~~g~~A~~~~-L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~v~l~V~R~~   88 (103)
T d1v5la_          13 GPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE   88 (103)
T ss_dssp             SSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCT
T ss_pred             CCCCCCEEEEeecCCCCCEEEEEccCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECC
Confidence            4678999999998888899999999999999876 999999999999999999999999999999999999998754

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.5e-11  Score=109.40  Aligned_cols=81  Identities=37%  Similarity=0.521  Sum_probs=68.2

Q ss_pred             EEEEEeccCCCCcceEEeCCCCCCC-CeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcC-----
Q psy4897         176 RIIRVKKSENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG-----  249 (774)
Q Consensus       176 r~V~L~k~~~~~LGfsi~gg~~~~~-pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g-----  249 (774)
                      ..|++.+ ...+|||++.++.+... +++|..|.|+++|+++|.|++||+|++|||+++.+++|++++++|++++     
T Consensus         8 ~vv~~~k-~~~~lG~~i~gg~~~~~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~~~   86 (103)
T d1ufxa_           8 TLVRVKK-SAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDR   86 (103)
T ss_dssp             EEEEEEC-CSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSC
T ss_pred             EEEEEEe-CCCccCEEEeeecCCCCCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCCcc
Confidence            4566666 46789999999876543 5899999999999999999999999999999999999999999999853     


Q ss_pred             cceEEEEE
Q psy4897         250 KLVELEVK  257 (774)
Q Consensus       250 ~~V~L~V~  257 (774)
                      ..+.|.|.
T Consensus        87 ~~~~l~v~   94 (103)
T d1ufxa_          87 DYIDFLVT   94 (103)
T ss_dssp             SEEEEEEC
T ss_pred             ceEEEEEe
Confidence            34555553

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=9e-11  Score=108.00  Aligned_cols=82  Identities=22%  Similarity=0.249  Sum_probs=71.5

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc--Ccc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GKL  251 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~--g~~  251 (774)
                      +...+++.+. ..+|||.+..+   ..+++|..|.+++||+++|.|++||+|++|||++|.+++|++++++|+..  +..
T Consensus        27 ~~~~v~l~~g-~~GlG~~i~~~---~~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g~~  102 (126)
T d1wifa_          27 KVIQTKLTVG-NLGLGLVVIQN---GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTV  102 (126)
T ss_dssp             CEEEEEEECC-TTCCCCCEEEE---TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCE
T ss_pred             cEEEEEEeeC-CCcEEEEEEec---CCcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCCCE
Confidence            4667777774 56899998764   34689999999999999999999999999999999999999999999973  579


Q ss_pred             eEEEEEEe
Q psy4897         252 VELEVKYL  259 (774)
Q Consensus       252 V~L~V~R~  259 (774)
                      |+|+|.|.
T Consensus       103 v~L~v~R~  110 (126)
T d1wifa_         103 LQIKAYRG  110 (126)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEEeC
Confidence            99999875

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.08  E-value=1.5e-10  Score=100.66  Aligned_cols=76  Identities=18%  Similarity=0.267  Sum_probs=66.6

Q ss_pred             CCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEEEEecc
Q psy4897         185 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELEVKYLRE  261 (774)
Q Consensus       185 ~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~~~  261 (774)
                      -.++|+.+....+...+++|..|.++|||+++| |++||+|++|||+++.++++++++++|+. .+..|+|+|.|...
T Consensus         4 ~~GiGi~i~~~~~~~~~v~V~~v~~gsPA~~AG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g~   80 (92)
T d1fc6a3           4 VTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA   80 (92)
T ss_dssp             CBBCSEEEEECTTCSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             eEEEEEEEEEcCCCCceEEEEEecCCCChhHHh-hHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECCC
Confidence            357888887654456789999999999999998 99999999999999999999999999984 77899999998654

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.8e-10  Score=104.24  Aligned_cols=83  Identities=22%  Similarity=0.330  Sum_probs=69.0

Q ss_pred             eEEEEEeccC-CCCcceEEeCCCC--CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCc
Q psy4897         175 KRIIRVKKSE-NNGLGISIKGGKE--NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGK  250 (774)
Q Consensus       175 ~r~V~L~k~~-~~~LGfsi~gg~~--~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~  250 (774)
                      .+.|++.+.. ..+|||++.++.+  ...+++|+.|.+++||+++|+|++||+|++|||+++.+  +.+++.+++. .+.
T Consensus        20 ~~~V~l~k~~~~~~lG~~i~~~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~--~~~~~~~l~~~~~~   97 (124)
T d1wh1a_          20 LEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEENK   97 (124)
T ss_dssp             ECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCSSCC
T ss_pred             eEEEEEEECCCCCcccEEEEecCCCCCCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECCC--HHHHHHHHhhCCCC
Confidence            4456676643 5689999988654  46789999999999999999999999999999999986  7888888886 577


Q ss_pred             ceEEEEEEe
Q psy4897         251 LVELEVKYL  259 (774)
Q Consensus       251 ~V~L~V~R~  259 (774)
                      .|.|+|.|.
T Consensus        98 ~v~l~v~r~  106 (124)
T d1wh1a_          98 NFSLLIARP  106 (124)
T ss_dssp             SCCEEEEEC
T ss_pred             cEEEEEEeC
Confidence            888988764

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.06  E-value=1.4e-10  Score=99.75  Aligned_cols=73  Identities=21%  Similarity=0.236  Sum_probs=59.1

Q ss_pred             CcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        32 ~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      .+||+.+....+ ..|++|.+|.|+|||+++| |++||+|++|||++|.++.+...+...+++|+.++|+|.|..
T Consensus         3 ~~LGv~~~~~~~-~~Gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~i~~~~~~~~~i~~~~~g~~v~l~v~r~~   75 (88)
T d2z9ia1           3 ASLGVQVTNDKD-TLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSADALVAAVRSKAPGATVALTFQDPS   75 (88)
T ss_dssp             EECCEEEECCC--CCSEEEEEECTTSTTGGGT-CCTTCEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEEEETT
T ss_pred             CEEeEEEEecCC-CCcEEEEEECCCCHHHHcC-CCCCCEEEEeCCCcCCcHHHHHHHHHhCCCCCEEEEEEEECC
Confidence            368999875433 4689999999999999998 999999999999999987554444444456899999998853

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.3e-09  Score=95.22  Aligned_cols=79  Identities=22%  Similarity=0.351  Sum_probs=62.5

Q ss_pred             ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcc
Q psy4897         174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKL  251 (774)
Q Consensus       174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~  251 (774)
                      +..+|++.|. ..+|||++.++.+   ...+..+   .+|+.+++|++||+|++|||++|.+++|++++++||+  .+..
T Consensus        10 e~~~v~l~k~-~~glGf~i~g~~~---~~~~~~~---~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~g~~   82 (96)
T d1ujva_          10 ELMTLTIVKG-AQGFGFTIADSPT---GQRVKQI---LDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSE   82 (96)
T ss_dssp             CCEEEEEECC-SSSSSEEEEEETT---EEEEEEE---SCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSE
T ss_pred             eEEEEEEEeC-CCcccEEEEeeCC---CceEeec---cCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCE
Confidence            4678999986 4689999998643   2333333   3445555699999999999999999999999999998  4678


Q ss_pred             eEEEEEEe
Q psy4897         252 VELEVKYL  259 (774)
Q Consensus       252 V~L~V~R~  259 (774)
                      |+|+|.|.
T Consensus        83 v~l~v~R~   90 (96)
T d1ujva_          83 TSLIIHRG   90 (96)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEEC
Confidence            99999874

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.2e-08  Score=88.74  Aligned_cols=87  Identities=14%  Similarity=0.192  Sum_probs=64.9

Q ss_pred             CCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCC----ceeeEEEEecCh
Q psy4897         457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQ----GVATHHLRAETH  532 (774)
Q Consensus       457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~----g~~~~~~~~et~  532 (774)
                      ....|+++|++|++..|++|.++.........+...+.+..   +........+||.+.+....    +.++++|++||.
T Consensus        17 ~~~~WkkRwFvL~~~~L~yyk~~~~~~~~~~i~l~~~~v~~---~~~~~~~~~~~F~l~~~~~~~~~~~~r~~~l~a~s~   93 (111)
T d2dyna_          17 MKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRD---VEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQ   93 (111)
T ss_dssp             TTTSSEEEEEEEESSEEEEESSTTCCCEEEEEECTTEEEEE---ECCCSTTCSEEEEEEESSCSCSBTTBSSEEEEESSH
T ss_pred             CcCCceEEEEEEECCEEEEEcchhhcccccccccccceeEe---eccccccccccEEeeeccccccccCceeEEEECCCH
Confidence            35679999999999999999998766555555555543332   22233345599999876432    236899999999


Q ss_pred             hHHHHHHHHHHHHH
Q psy4897         533 RDLANWARTLVQAT  546 (774)
Q Consensus       533 ~dl~~w~~~l~~~~  546 (774)
                      .|+..|..+|.+|.
T Consensus        94 ed~~~W~~al~~A~  107 (111)
T d2dyna_          94 EEVDSWKASFLRAG  107 (111)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999999874

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3e-08  Score=85.02  Aligned_cols=84  Identities=18%  Similarity=0.265  Sum_probs=61.5

Q ss_pred             CCceEEEEEEeccce---eEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhH
Q psy4897         458 TDRWVSIFGAVTERE---LRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRD  534 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~---l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~d  534 (774)
                      ...|+++||+|++.+   ||.|+++.....-...++..+.+...  .........++|.+.++.    ++|+|++|+..|
T Consensus        13 ~k~W~krwfvL~~~~~~~ly~~~~~~~~~~~~~i~l~~~~~~~~--~~~~~~~~~~~F~i~~~~----r~~~l~A~s~~e   86 (99)
T d2coca1          13 GETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVP--DPEERLDSGHVWKLQWAK----QSWYLSASSAEL   86 (99)
T ss_dssp             SSCEEEEEEECCTTCTTCEEEECCTTCSSSCSEECGGGCEEECC--CSSSCCSSSEEEEEEETT----EEEEEEESSHHH
T ss_pred             CCCccEEEEEEecCCccEEEEECcCccccccccccccceeeeec--ccccccCCceEEEEEcCC----cEEEEECCCHHH
Confidence            356999999999885   88888877655555555555532211  011122334999998874    589999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy4897         535 LANWARTLVQATH  547 (774)
Q Consensus       535 l~~w~~~l~~~~~  547 (774)
                      +..|..+|.+|+|
T Consensus        87 ~~~Wi~aL~~Aa~   99 (99)
T d2coca1          87 QQQWLETLSTAAH   99 (99)
T ss_dssp             HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999986

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=4.2e-08  Score=86.63  Aligned_cols=91  Identities=14%  Similarity=0.301  Sum_probs=70.1

Q ss_pred             CCceEEEEEEecc-ceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897         458 TDRWVSIFGAVTE-RELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLA  536 (774)
Q Consensus       458 ~~~w~~~~~~l~~-~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~  536 (774)
                      ...|+++|++|++ ..|++|...+........|+..+.+.....+.. .....++|.+.+........|+|.++|..|+.
T Consensus        20 ~k~Wk~RwfvL~~~~~l~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~-~~~~~~~f~i~~~~~~~~~~~~f~a~s~~e~~   98 (118)
T d1unqa_          20 IKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKT-ERPRPNTFIIRCLQWTTVIERTFHVETPEERE   98 (118)
T ss_dssp             SCCEEEEEEEEETTSEEEEESSCCCSHHHHTSCSEEEECTTCEEEEE-CSSSTTEEEEEEEETTEEEEEEEECSSHHHHH
T ss_pred             CCCcEEEEEEEeccceeEEEeeccCccccccccccceEEeecccccc-cccCCceEEEEeccccceeEEEEEeCCHHHHH
Confidence            4679999999985 578889888888888888887765544332221 22334899999876656678999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy4897         537 NWARTLVQATHSC  549 (774)
Q Consensus       537 ~w~~~l~~~~~~~  549 (774)
                      .|..+|..++...
T Consensus        99 ~Wi~ai~~~~~~~  111 (118)
T d1unqa_          99 EWTTAIQTVADGL  111 (118)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999888654

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.69  E-value=2.9e-08  Score=84.94  Aligned_cols=69  Identities=22%  Similarity=0.341  Sum_probs=58.6

Q ss_pred             CcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEe
Q psy4897         187 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYL  259 (774)
Q Consensus       187 ~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~  259 (774)
                      .||+.+....+ ..+++|..|.|+|||+++| |++||+|++|||+++.+  ..++...+..  .++.+.|+|.|.
T Consensus         4 ~LGv~~~~~~~-~~Gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~i~~--~~~~~~~i~~~~~g~~v~l~v~r~   74 (88)
T d2z9ia1           4 SLGVQVTNDKD-TLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINS--ADALVAAVRSKAPGATVALTFQDP   74 (88)
T ss_dssp             ECCEEEECCC--CCSEEEEEECTTSTTGGGT-CCTTCEEEEETTEECCS--HHHHHHHHHTSCTTCEEEEEEEET
T ss_pred             EEeEEEEecCC-CCcEEEEEECCCCHHHHcC-CCCCCEEEEeCCCcCCc--HHHHHHHHHhCCCCCEEEEEEEEC
Confidence            57877765433 5689999999999999998 99999999999999987  7788888765  578999999984

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=3.2e-09  Score=91.17  Aligned_cols=61  Identities=23%  Similarity=0.355  Sum_probs=54.5

Q ss_pred             CCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          43 ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        43 e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      +...|++|..|.|+|||+++| |++||+|++|||++|.++  .++..++++++..+.|+|.|+.
T Consensus        22 ~~~~Gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~~--~~~~~~l~~~~~~v~l~v~R~~   82 (88)
T d1ky9b2          22 GKDQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLALNIQRGD   82 (88)
T ss_dssp             TTTSCCCBCCCCSSCTTGGGT-CCSSCEEEEETTEECSSH--HHHHHHTTTCCSCCCEEEESSS
T ss_pred             CCCCeEEEEEECCCCHHHHcC-CCCCcEEEEECCEEcCCH--HHHHHHHHhCCCEEEEEEEECC
Confidence            345789999999999999998 999999999999999854  7778888999999999999875

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=3.6e-08  Score=85.43  Aligned_cols=84  Identities=12%  Similarity=0.289  Sum_probs=63.3

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccC-CCC-CcEEEEEEeCCCCceeeEEEEecChhHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSS-RHS-DVIVFSVRCGTPQGVATHHLRAETHRDL  535 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s-~~~-~~~~f~~~~~t~~g~~~~~~~~et~~dl  535 (774)
                      ...|+++||+|++..|++|++...     ..|....+|....++... ... ..++|.|.+... +-++++|++|+..|+
T Consensus        14 ~k~W~kR~fvL~~~~L~yy~~~~~-----~~~~~~i~l~~~~v~~~~~~~~~~~~~f~i~~~~~-~~~~~~~~a~s~~e~   87 (101)
T d2fjla1          14 NHEWYPHYFVLTSSKIYYSEETSS-----DLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSV-AQWSLDVAADSQEEL   87 (101)
T ss_dssp             TTEEEEEEEEEETTEEEECCCCSC-----TCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTT-SSCCEEEEESSHHHH
T ss_pred             CCCCeEEEEEEECCEEEEEecccc-----ceecceEEcCCceeEeeeeecccccceeEEecccc-ccEEEEEEeCCHHHH
Confidence            567999999999999999987654     345555555544444322 222 238999998754 447899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4897         536 ANWARTLVQATH  547 (774)
Q Consensus       536 ~~w~~~l~~~~~  547 (774)
                      ..|..+|.+++-
T Consensus        88 ~~Wi~ai~~~~~   99 (101)
T d2fjla1          88 QDWVKKIREVAQ   99 (101)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999999874

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.1e-07  Score=84.13  Aligned_cols=88  Identities=10%  Similarity=0.167  Sum_probs=63.0

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCce----eeEEEEecChh
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGV----ATHHLRAETHR  533 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~----~~~~~~~et~~  533 (774)
                      ...|+++||+|++..|++|+.++........++..+.+....  ........++|.+.+.....+    .+|+|++++..
T Consensus        21 ~k~WkkR~fvL~~~~l~y~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~a~s~e   98 (118)
T d1v89a_          21 VKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIA--TNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQA   98 (118)
T ss_dssp             SSCEEEEEEEEETTEEEEESSSSCCSCSEEECSTTEEEEEEC--CCSSCCCCCEEEEEESCCSSCCSSCCCEEEECSSHH
T ss_pred             CCCcEEEEEEEECCEEEEecccCcccccceeccCceEEEEec--cccccCCCcEEEEecCCCcceecCCcEEEEEcCCHH
Confidence            356999999999999999999886654444444443222211  112223348999998765333    57999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy4897         534 DLANWARTLVQATH  547 (774)
Q Consensus       534 dl~~w~~~l~~~~~  547 (774)
                      |+..|..+|.+|+-
T Consensus        99 e~~~Wi~aI~~a~~  112 (118)
T d1v89a_          99 EMEEWVKFLRRVAG  112 (118)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999999863

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.3e-07  Score=81.88  Aligned_cols=84  Identities=19%  Similarity=0.242  Sum_probs=63.0

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLAN  537 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~  537 (774)
                      ...|+++||+|++..||+|.+.+....-...++..+.+....  ........++|.+.+.   +-.+|+|+++|..|+..
T Consensus        23 ~k~W~kr~~vL~~~~L~~y~~~~~~~~~~~i~l~~~~v~~~~--~~~~~~~~~~~~i~~~---~~~~~~~~a~s~~e~~~   97 (107)
T d1upqa_          23 LRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDG--PGAPRGRRFTFTAEHP---GMRTYVLAADTLEDLRG   97 (107)
T ss_dssp             SCCEEEEEEEEETTEEEEESSTTCCSCCEEEEGGGCEEEECC--SSCTTSSSSEEEEECT---TSCCEEEECSSHHHHHH
T ss_pred             CCCeeEEEEEEECCEEEEecCcccccccceecccceEEEEec--cCcccCcceEEEEEcC---CCeEEEEEcCCHHHHHH
Confidence            467999999999999999999887665555555555332211  1123333489998876   33789999999999999


Q ss_pred             HHHHHHHHH
Q psy4897         538 WARTLVQAT  546 (774)
Q Consensus       538 w~~~l~~~~  546 (774)
                      |..+|.+|+
T Consensus        98 Wi~al~~A~  106 (107)
T d1upqa_          98 WLRALGRAS  106 (107)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999886

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.7e-08  Score=88.30  Aligned_cols=58  Identities=24%  Similarity=0.438  Sum_probs=51.0

Q ss_pred             CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      ..|++|..|.|+|||+++| |++||+|++|||++|.++  .+...++ +.++.+.++|.|++
T Consensus        30 ~~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~V~s~--~dl~~~l-~~g~~v~l~v~R~g   87 (100)
T d1lcya1          30 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNA--EDVYEAV-RTQSQLAVQIRRGR   87 (100)
T ss_dssp             SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSH--HHHHHHH-TTCSSEEEEEEETT
T ss_pred             CCcEEEEEECCCchHhhcC-CCCCcEEEEECCEEcCCH--HHHHHHh-cCCCEEEEEEEECC
Confidence            4689999999999999998 999999999999999976  4556666 47889999999976

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=9.9e-08  Score=82.86  Aligned_cols=84  Identities=10%  Similarity=0.126  Sum_probs=59.9

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCC-CCCcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSR-HSDVIVFSVRCGTPQGVATHHLRAETHRDLA  536 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~-~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~  536 (774)
                      ..+|+++|++|++..|++|.++.........++..+...  ....... ....+||.|.+...   ++|+|++|+..|+.
T Consensus        18 ~~~Wkkr~~vL~~~~L~y~~~~~~~~~~~~i~l~~~~~~--~~~~~~~~~~~~~~f~i~~~~~---~~~~f~a~s~~e~~   92 (106)
T d1u5da1          18 GSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVR--MAPHLRRDSKKESCFELTSQDR---RTYEFTATSPAEAR   92 (106)
T ss_dssp             CEEEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEE--ECGGGCSSGGGGGEEEEECSSS---CCEEEECSSHHHHH
T ss_pred             cCCcEEEEEEEECCEEEEEecccccccccccccCCceEe--eccccccccCCceeEEEEcCCC---cEEEEEeCCHHHHH
Confidence            567999999999999999998875543333333333211  1111122 22239999998743   68999999999999


Q ss_pred             HHHHHHHHHH
Q psy4897         537 NWARTLVQAT  546 (774)
Q Consensus       537 ~w~~~l~~~~  546 (774)
                      .|..+|..++
T Consensus        93 ~W~~ai~~~i  102 (106)
T d1u5da1          93 DWVDQISFLL  102 (106)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998876

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.1e-07  Score=82.51  Aligned_cols=80  Identities=18%  Similarity=0.264  Sum_probs=61.4

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccC-CCCCcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSS-RHSDVIVFSVRCGTPQGVATHHLRAETHRDLA  536 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s-~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~  536 (774)
                      ...|+++|++|++..|++|.+...     ..|....+|.....+... .....+||.|.++.    ++++|++||..|+.
T Consensus        17 ~k~Wk~R~fvL~~~~L~yy~~~~~-----~~~~g~i~L~~~~~v~~~~~~~~~~~F~i~~~~----r~~~l~a~s~~~~~   87 (100)
T d1faoa_          17 VKTWKTRWFTLHRNELKYFKDQMS-----PEPIRILDLTECSAVQFDYSQERVNCFCLVFPF----RTFYLCAKTGVEAD   87 (100)
T ss_dssp             SCCEEEEEEEEETTEEEEESSTTC-----SSCSEEEEGGGCCEEEEECSSSSSSEEEEEETT----EEEEEECSSHHHHH
T ss_pred             CCCceEEEEEEECCEEEEEeccCC-----ccCceEEechheEEEEeccccccccccccccCC----eEEEEEeCCHHHHH
Confidence            457999999999999999987653     345566666554433332 23334999999874    68999999999999


Q ss_pred             HHHHHHHHHH
Q psy4897         537 NWARTLVQAT  546 (774)
Q Consensus       537 ~w~~~l~~~~  546 (774)
                      .|..+|.+++
T Consensus        88 ~Wi~ai~~~i   97 (100)
T d1faoa_          88 EWIKILRWKL   97 (100)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998875

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=1.6e-08  Score=86.74  Aligned_cols=61  Identities=20%  Similarity=0.308  Sum_probs=55.7

Q ss_pred             CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEeccc
Q psy4897         199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREV  262 (774)
Q Consensus       199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~~  262 (774)
                      ..|++|..|.++|||+++| |++||+|++|||+++.+  .+++.++++++++.+.|+|.|..+.
T Consensus        24 ~~Gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~--~~~~~~~l~~~~~~v~l~v~R~~~~   84 (88)
T d1ky9b2          24 DQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKN--IAELRKVLDSKPSVLALNIQRGDST   84 (88)
T ss_dssp             TSCCCBCCCCSSCTTGGGT-CCSSCEEEEETTEECSS--HHHHHHHTTTCCSCCCEEEESSSCE
T ss_pred             CCeEEEEEECCCCHHHHcC-CCCCcEEEEECCEEcCC--HHHHHHHHHhCCCEEEEEEEECCEE
Confidence            5689999999999999998 99999999999999987  8999999998889999999987653

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3e-08  Score=86.67  Aligned_cols=61  Identities=21%  Similarity=0.392  Sum_probs=54.6

Q ss_pred             CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEeccc
Q psy4897         198 NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREV  262 (774)
Q Consensus       198 ~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~~  262 (774)
                      ...|++|..|.++|||+++| |++||+|++|||++|.+  .+++.+.++ .++.+.++|.|.++.
T Consensus        29 ~~~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~V~s--~~dl~~~l~-~g~~v~l~v~R~g~~   89 (100)
T d1lcya1          29 VQHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVR-TQSQLAVQIRRGRET   89 (100)
T ss_dssp             CSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHT-TCSSEEEEEEETTEE
T ss_pred             CCCcEEEEEECCCchHhhcC-CCCCcEEEEECCEEcCC--HHHHHHHhc-CCCEEEEEEEECCEE
Confidence            35689999999999999998 99999999999999987  889988885 688999999998764

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.55  E-value=1e-07  Score=82.25  Aligned_cols=69  Identities=14%  Similarity=0.219  Sum_probs=55.1

Q ss_pred             CcccEEEEccCCCCCCeEEEEecCC--------CHHhhhCCC-CCCCEEEEECCEecCCCCHHHHHHHHH-hcCceEEEE
Q psy4897          32 NGLGISIKGGKENKMPILISKIFKG--------MAADQTEQL-YVGDAILSVNGEDLREATHDEAVKALK-RAGKVVELE  101 (774)
Q Consensus        32 ~gLGfsI~GG~e~~~gi~Vs~V~pG--------SpAaraG~L-qvGD~ILsVNG~~V~~~sh~eaV~lLk-~ag~~V~L~  101 (774)
                      ++||+.+.--   +.++.|.+|.+|        |||+++| | ++||+|++|||++|.++.  +++.+|+ ++|..|+|+
T Consensus         1 G~lG~d~~~~---~~~~~I~~i~~G~~~~~~~~sPa~~aG-l~k~GD~I~~IdG~~v~~~~--~~~~~l~g~~G~~V~L~   74 (91)
T d1k32a1           1 GRIACDFKLD---GDHYVVAKAYAGDYSNEGEKSPIFEYG-IDPTGYLIEDIDGETVGAGS--NIYRVLSEKAGTSARIR   74 (91)
T ss_dssp             CBCSEEEEEE---TTEEEEEEECBSCTTSTTCBCGGGGGT-CCCTTCEEEEETTEECBTTB--CHHHHHHTTTTSEEEEE
T ss_pred             CcccEEEEEE---CCeEEEEEEecCCCCCcccCChhHhcC-CCCCCCEEEEECCEeecCcc--eeEEEEecCCCCEEEEE
Confidence            3566555421   357999999988        9999998 7 899999999999999875  4556665 478999999


Q ss_pred             eeecc
Q psy4897         102 VGVGY  106 (774)
Q Consensus       102 V~R~~  106 (774)
                      |.|..
T Consensus        75 i~R~g   79 (91)
T d1k32a1          75 LSGKG   79 (91)
T ss_dssp             EECSS
T ss_pred             EEeCC
Confidence            99865

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=7.4e-08  Score=82.51  Aligned_cols=82  Identities=18%  Similarity=0.402  Sum_probs=62.7

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLAN  537 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~  537 (774)
                      ..+|+++||+|++..|++|.++....    .|....+|..+.++........++|.+.+.   +-++++|+++|..|+..
T Consensus        12 ~~~WkkR~fvL~~~~L~yyk~~~~~~----~~~~~i~l~~~~v~~~~~~~~~~~f~~~~~---~~~~~~l~A~s~~e~~~   84 (95)
T d2cofa1          12 NSQWKSRWCSVRDNHLHFYQDRNRSK----VAQQPLSLVGCEVVPDPSPDHLYSFRILHK---GEELAKLEAKSSEEMGH   84 (95)
T ss_dssp             TTEEEEEEEEECSSCEEEECSSTTCS----EEEEEECTTTCEEECCCBTTBSCEEEEEET---TEEEEEEECSSHHHHHH
T ss_pred             CCCceEEEEEEECCEEEEEecccccc----cccccccccceEEEecccccceecceeccc---cceeEEeeCCCHHHHHH
Confidence            46799999999999999998865432    344455555555554434444589999886   34899999999999999


Q ss_pred             HHHHHHHHH
Q psy4897         538 WARTLVQAT  546 (774)
Q Consensus       538 w~~~l~~~~  546 (774)
                      |.++|+.++
T Consensus        85 Wi~~L~~~t   93 (95)
T d2cofa1          85 WLGLLLSES   93 (95)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHHh
Confidence            999999875

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=2.6e-07  Score=80.76  Aligned_cols=81  Identities=14%  Similarity=0.251  Sum_probs=60.4

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCC-CCcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRH-SDVIVFSVRCGTPQGVATHHLRAETHRDLA  536 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~-~~~~~f~~~~~t~~g~~~~~~~~et~~dl~  536 (774)
                      ...|+++||+|++..||+|.+.-...     |....+|....+....+. ...++|.|.+..   -..|+|++++..|+.
T Consensus        21 ~~~W~kr~~vL~~~~L~~~k~~~~~~-----~~~~i~l~~~~~~~~~~~~~~~~~F~i~~~~---~~~~~f~a~s~~~~~   92 (109)
T d1wgqa_          21 KKPWKHLWFVIKNKVLYTYAASEDVA-----ALESQPLLGFTVTLVKDENSESKVFQLLHKG---MVFYVFKADDAHSTQ   92 (109)
T ss_dssp             TSCCEEEEEEEETTEEEEESCTTCSS-----CSEEEECSSEEEEECCCSSCSSSEEEEEETT---EEEEEEECSSHHHHH
T ss_pred             CCCceEEEEEEeCCEEEEeccccccc-----cccccccceeeeeecccccccceeeeeeccc---ceEEEEECCCHHHHH
Confidence            35799999999999999998865433     444445544433222222 334999999863   378999999999999


Q ss_pred             HHHHHHHHHH
Q psy4897         537 NWARTLVQAT  546 (774)
Q Consensus       537 ~w~~~l~~~~  546 (774)
                      .|..+|..|+
T Consensus        93 ~Wi~ai~~a~  102 (109)
T d1wgqa_          93 RWIDAFQEGT  102 (109)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999986

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.4e-07  Score=85.03  Aligned_cols=86  Identities=16%  Similarity=0.222  Sum_probs=63.2

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCc----------------
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQG----------------  521 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g----------------  521 (774)
                      ...|+++||+|++..|++|.++...     .|....+|-..+++......+.+||.+.+...+.                
T Consensus        20 ~k~WkkRwfvL~~~~L~yyk~~~~~-----~~~g~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~   94 (130)
T d1v88a_          20 LKSWTKLWCVLKPGVLLIYKTQKNG-----QWVGTVLLNACEIIERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSIT   94 (130)
T ss_dssp             SSSCEEEEEEEETTEEEEESCSSSC-----CCCEEEECSSCEECCCCTTTSSCEEEEECTTCCCCSCSSCTTSCSCSCCC
T ss_pred             CCCceEEEEEEeCCEEEEEcCCCCC-----cceeEEECCCeEEEEccccCCCceEEEEcCCCcceecccCcccccceeEE
Confidence            4579999999999999999987644     4555555555455443344455899987754432                


Q ss_pred             ----eeeEEEEecChhHHHHHHHHHHHHHHH
Q psy4897         522 ----VATHHLRAETHRDLANWARTLVQATHS  548 (774)
Q Consensus       522 ----~~~~~~~~et~~dl~~w~~~l~~~~~~  548 (774)
                          ...++|.+||..|+..|..+|.++++.
T Consensus        95 ~~~~~~~~~l~A~s~~e~~~Wi~al~~~i~~  125 (130)
T d1v88a_          95 QPLPSSYLIIRATSESDGRCWMDALELALKS  125 (130)
T ss_dssp             SCCCSSCCEEECSSHHHHHHHHHHHHHHHTT
T ss_pred             ecCCcEEEEEECCCHHHHHHHHHHHHHHhhc
Confidence                123679999999999999999888753

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.53  E-value=2.3e-07  Score=82.78  Aligned_cols=87  Identities=9%  Similarity=0.163  Sum_probs=62.3

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLAN  537 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~  537 (774)
                      ...|+.+||+|++..|++|.+.....       ..-+|.....|........++|.+.+...   ++++|++||..|+..
T Consensus        24 ~~~WkkR~fvL~~~~L~yy~~~~~~~-------~~i~l~~~~~v~~~~~~~~~~f~i~~~~~---~~~~f~a~s~~e~~~   93 (119)
T d1omwa2          24 LTQWQRRYFYLFPNRLEWRGEGEAPQ-------SLLTMEEIQSVEETQIKERKCLLLKIRGG---KQFVLQCDSDPELVQ   93 (119)
T ss_dssp             ---CEEEEEEEETTEEEEECTTSCCC-------EEEEGGGEEEEEEEESSSCEEEEEEETTS---CEEEEECSSHHHHHH
T ss_pred             CCCeEEEEEEEEcCeEEEEecccccC-------ccceeccccccccccccccceEEEEcCCC---cEEEEECCCHHHHHH
Confidence            46799999999999999998766321       12233333333333344558999887633   689999999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q psy4897         538 WARTLVQATHSCVLNQR  554 (774)
Q Consensus       538 w~~~l~~~~~~~~~~~~  554 (774)
                      |..+|..|+..+-+.++
T Consensus        94 W~~al~~a~~~~~~~~~  110 (119)
T d1omwa2          94 WKKELRDAYREAQQLVQ  110 (119)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999887766554

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.2e-07  Score=86.38  Aligned_cols=84  Identities=15%  Similarity=0.261  Sum_probs=58.0

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCC-CCCcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSR-HSDVIVFSVRCGTPQGVATHHLRAETHRDLA  536 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~-~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~  536 (774)
                      ...|+++||+|++..||+|.+.+... .-..|....+|..+.+..... ....+||.|.+..    .+++|.++|..|+.
T Consensus        24 ~k~Wkkr~fvL~~~~L~~y~~~~~~~-~~~~~~~~i~L~~~~v~~~~~~~~r~~~F~i~~~~----~~~~f~A~s~~e~~   98 (133)
T d2j59m1          24 IRPWKQMYVVLRGHSLYLYKDKREQT-TPSEEEQPISVNACLIDISYSETKRKNVFRLTTSD----CECLFQAEDRDDML   98 (133)
T ss_dssp             --CCEEEEEEEETTEEEEESCTTCC---------CEECSSCEEEECSSSCSCSSEEEEECSS----CEEEEECSSHHHHH
T ss_pred             CCCceEEEEEEeCCEEEEEecccccc-ccccccccceecceEEEEcccccccCceeEEecCC----CEEEEEeCCHHHHH
Confidence            45799999999999999999876432 234555666665555433222 3334999999874    47999999999999


Q ss_pred             HHHHHHHHHH
Q psy4897         537 NWARTLVQAT  546 (774)
Q Consensus       537 ~w~~~l~~~~  546 (774)
                      .|..+|..++
T Consensus        99 ~Wi~ai~~a~  108 (133)
T d2j59m1          99 AWIKTIQESS  108 (133)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=6.4e-09  Score=90.32  Aligned_cols=63  Identities=17%  Similarity=0.217  Sum_probs=52.0

Q ss_pred             CCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          43 ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        43 e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      +...|++|..|.|+|||+++| |++||+|++|||++|.++.+........+.++.+.|+|.|++
T Consensus        24 ~~~~Gv~V~~V~~~spA~~aG-l~~gDvI~~i~g~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g   86 (94)
T d1ky9a1          24 DAQRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDG   86 (94)
T ss_dssp             TTCCSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSSHHHHHHTTSSBTTCCCEEEEESSS
T ss_pred             CCCCCcEEEECCCChhHHHhC-CCcccEEEEECCEEeCCHHHHHHHHHhCCCCCEEEEEEEECC
Confidence            335699999999999999998 999999999999999998655433322346889999999976

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=8.3e-09  Score=90.50  Aligned_cols=62  Identities=21%  Similarity=0.179  Sum_probs=47.7

Q ss_pred             CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          44 NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        44 ~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      ...|++|.+|.++|||+++| |++||+|++|||++|.++.+......-.+.++.+.|+|.|++
T Consensus        24 ~~~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g   85 (99)
T d1sota1          24 QLQGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDD   85 (99)
T ss_dssp             ---CEECCCCCSSSTTTSSS-CCTTCEECBSSSSBCCCSHHHHHHHHHSCTTCEEEECC----
T ss_pred             CCCccEEEEecCCCCHHHcC-CCcceEEEEECCEecccHHHHHHHHHcCCCCCEEEEEEEECC
Confidence            34689999999999999998 999999999999999998665444333457899999999876

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=2.9e-07  Score=80.56  Aligned_cols=80  Identities=13%  Similarity=0.193  Sum_probs=58.5

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeecc---CCC-CCcEEEEEEeCCCCceeeEEEEecChh
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS---SRH-SDVIVFSVRCGTPQGVATHHLRAETHR  533 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~---s~~-~~~~~f~~~~~t~~g~~~~~~~~et~~  533 (774)
                      ..+|+++||+|++..|++|.+....     .|....+|....++..   ... ...++|.|.++..   .+|+|+++|..
T Consensus        26 ~~~W~~r~~vL~~~~L~~y~~~~~~-----~p~g~i~L~~~~~~~~~~~~~~~~~~~~f~i~~~~~---~~~~~~a~s~~   97 (111)
T d1u5fa1          26 GFEWQKRWCALSKTVFYYYGSDKDK-----QQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDK---RIYQFTAASPK   97 (111)
T ss_dssp             SCSEEEEEEEEETTEEEEESSTTCS-----SCSEEEECTTCEEEECTTSCSSTTGGGEEEEECTTS---CEEEEECSSHH
T ss_pred             cCCceEEEEEEECCEEEeecccccc-----CcceEEEecccEEEeeccccccccccceEEEEccCC---cEEEEEcCCHH
Confidence            4689999999999999999987644     3444444443332221   112 2239999998743   78999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4897         534 DLANWARTLVQA  545 (774)
Q Consensus       534 dl~~w~~~l~~~  545 (774)
                      |+..|.++|...
T Consensus        98 e~~~W~~ai~~~  109 (111)
T d1u5fa1          98 DAEEWVQQLKFI  109 (111)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999764

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.49  E-value=4.4e-08  Score=86.44  Aligned_cols=58  Identities=26%  Similarity=0.311  Sum_probs=49.2

Q ss_pred             CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHH--hcCceEEEEeeecc
Q psy4897          45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK--RAGKVVELEVGVGY  106 (774)
Q Consensus        45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk--~ag~~V~L~V~R~~  106 (774)
                      +.|++|..|.+|+||++ + |++||+|++|||++|.++  .+....++  ++|+.|+|+|.|+.
T Consensus         2 p~Gv~V~~V~~~sPA~~-~-L~~GD~I~~ing~~v~~~--~~l~~~i~~~~~G~~v~l~v~R~~   61 (103)
T d2hgaa1           2 PDGVQIDSVVPGSPASK-V-LTPGLVIESINGMPTSNL--TTYSAALKTISVGEVINITTDQGT   61 (103)
T ss_dssp             CCCEEEEEECSSSGGGG-T-SCTTCEEEEETTEECSSH--HHHHHHHTTCCTTCEEEEEETTEE
T ss_pred             CCcEEEEEECCCChHHh-c-CCCCCEEEEECCEEcCCH--HHHHHHHhhCCCCCEEEEEEEECC
Confidence            46899999999999986 5 999999999999999976  45556664  46899999998864

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=2.3e-07  Score=83.28  Aligned_cols=86  Identities=17%  Similarity=0.265  Sum_probs=66.7

Q ss_pred             CCCceEEEEEEe--ccceeEEecCCCCChhcccCcccccceeeEeeecc---C-CCCCcEEEEEEeCCCCceeeEEEEec
Q psy4897         457 STDRWVSIFGAV--TERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS---S-RHSDVIVFSVRCGTPQGVATHHLRAE  530 (774)
Q Consensus       457 ~~~~w~~~~~~l--~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~---s-~~~~~~~f~~~~~t~~g~~~~~~~~e  530 (774)
                      ....|+++||+|  ++..|+.|.+.|........|...+.+..+..+..   . .....++|.+.++.    +.|+|++|
T Consensus        28 ~~k~WkrRwFvL~~~~~~L~yy~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----r~~~l~Ae  103 (126)
T d1v5pa_          28 NSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINALS----QRYFLQAN  103 (126)
T ss_dssp             CSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEEEECSS----CEEEEECS
T ss_pred             CCCCeeEEEEEEEcCCCeEEEeeccccccccceeecccceeeeeeccccccccccccccceEEEcCCC----eeEEEECC
Confidence            356899999999  57789999999988888888887776554432221   1 11223899998874    58999999


Q ss_pred             ChhHHHHHHHHHHHHH
Q psy4897         531 THRDLANWARTLVQAT  546 (774)
Q Consensus       531 t~~dl~~w~~~l~~~~  546 (774)
                      |..|+..|..+|.+|+
T Consensus       104 s~~e~~~Wi~aL~~A~  119 (126)
T d1v5pa_         104 DQKDLKDWVEALNQAS  119 (126)
T ss_dssp             SHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999999885

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.9e-07  Score=79.01  Aligned_cols=80  Identities=16%  Similarity=0.200  Sum_probs=64.1

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLAN  537 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~  537 (774)
                      ...|+++||+|++..|++|.++...     .|....+|.....+..   .+.++|.|.++.    ++|+|+++|..|+..
T Consensus        15 ~~~W~kr~fvL~~~~L~~~~~~~~~-----~~~~~i~L~~~~~~~~---~~~~~f~i~~~~----~~~~l~a~s~~e~~~   82 (102)
T d2coda1          15 KRMFQKRWVKFDGLSISYYNNEKEM-----YSKGIIPLSAISTVRV---QGDNKFEVVTTQ----RTFVFRVEKEEERND   82 (102)
T ss_dssp             SSCCEEEEEEECSSEEEEEESSCCS-----SCCCEEETTTEEEEEE---ETTTEEEEEESS----CCEEEECSSHHHHHH
T ss_pred             CCCceEEEEEEECCEEEEEeccCcc-----eeEEEEEchhceeecc---ccceeEEEEcCC----cEEEEEeCCHHHHHH
Confidence            5779999999999999999987643     5666777766554432   234899999874    589999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4897         538 WARTLVQATHSC  549 (774)
Q Consensus       538 w~~~l~~~~~~~  549 (774)
                      |..+|..++...
T Consensus        83 Wi~ai~~~i~~~   94 (102)
T d2coda1          83 WISILLNALKSQ   94 (102)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC
Confidence            999998887543

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=9.7e-07  Score=78.55  Aligned_cols=85  Identities=9%  Similarity=0.148  Sum_probs=58.6

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCC-----------------
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQ-----------------  520 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~-----------------  520 (774)
                      ...|+++||+|++..|++|.+.+........++..+.+...     ....+.++|.+..+...                 
T Consensus        18 ~k~WkrR~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (127)
T d1fgya_          18 VKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREV-----LDPRKPNCFELYNPSHKGQVIKACKTEADGRVVE   92 (127)
T ss_dssp             SCCEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEEE-----CCSSCSSEEEEECSSSTTCCCCCEEECTTSCEEE
T ss_pred             CCCcEEEEEEEECCEEEEEccCCCccccceEeCCCeEEEEc-----cCCCCCceEEEeccccccccccccccccceeEee
Confidence            46799999999999999999988766555555555533322     12222234443321110                 


Q ss_pred             -ceeeEEEEecChhHHHHHHHHHHHHHH
Q psy4897         521 -GVATHHLRAETHRDLANWARTLVQATH  547 (774)
Q Consensus       521 -g~~~~~~~~et~~dl~~w~~~l~~~~~  547 (774)
                       +..+|+|+++|..|+..|..+|.+++.
T Consensus        93 ~~~~~~~f~a~s~~e~~~Wi~aL~~~i~  120 (127)
T d1fgya_          93 GNHVVYRISAPSPEEKEEWMKSIKASIS  120 (127)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCHHHHHHHHHHHHHHHc
Confidence             225799999999999999999998865

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=9.6e-07  Score=80.88  Aligned_cols=81  Identities=11%  Similarity=0.185  Sum_probs=61.4

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEe-eeccCCC-CCcEEEEEEeCCCCceeeEEEEecChhHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTR-LVSSSRH-SDVIVFSVRCGTPQGVATHHLRAETHRDL  535 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r-~~~~s~~-~~~~~f~~~~~t~~g~~~~~~~~et~~dl  535 (774)
                      .+.|+.+|++|++..|++|+++...     .|....+|.... +....+. ...++|.|.+++    ++++|++||..|+
T Consensus        24 ~k~WkkrwfvL~~~~L~yY~~~~d~-----~~~~~i~L~~~~~~~~~~~~~~~~~~F~i~~~~----~~~~f~Aes~~e~   94 (136)
T d1x1fa1          24 YREYEHYWTELRGTTLFFYTDKKSI-----IYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPK----EEVQLKTENTESG   94 (136)
T ss_dssp             CCSCEEEEEEEETTEEEEESCSSCS-----SCSEECCCSSCCEEEECCCTTSCCCEEEEECSS----CCEEEECSSHHHH
T ss_pred             CCCeEEEEEEEcCCEeEEEeecccc-----cccccccccceeeeeeecccccccceeeecCCC----ceEEEEeCCHHHH
Confidence            5679999999999999999987643     455555554432 2222222 234999999885    4799999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4897         536 ANWARTLVQATH  547 (774)
Q Consensus       536 ~~w~~~l~~~~~  547 (774)
                      ..|..+|..++.
T Consensus        95 ~~Wi~~I~~v~~  106 (136)
T d1x1fa1          95 EEWRGFILTVTE  106 (136)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=98.40  E-value=1.1e-07  Score=81.26  Aligned_cols=60  Identities=17%  Similarity=0.091  Sum_probs=50.6

Q ss_pred             CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897          46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY  106 (774)
Q Consensus        46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~  106 (774)
                      .|+.|..+.++|||+++| |++||+|++|||++|.+..+........+.++.++++|.|++
T Consensus        19 ~G~~v~~v~~~s~~~~aG-l~~GDiI~~ing~~v~~~~~~~~~~~~~~~~~~~~l~v~R~g   78 (87)
T d2i6va1          19 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDG   78 (87)
T ss_dssp             EEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTCHHHHHHHHHTGGGCSEEEEEEEETT
T ss_pred             EEEEEecCCCCCHHHHCC-CCCCCEEEEECCEEeecHHHHHHHHHhhccccccEEEEEECC
Confidence            578899999999999998 999999999999999987655443333457899999999976

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=8.7e-07  Score=77.68  Aligned_cols=84  Identities=17%  Similarity=0.348  Sum_probs=62.3

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccC--CCCCcEEEEEEeCCCCceeeEEEEecChhHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSS--RHSDVIVFSVRCGTPQGVATHHLRAETHRDL  535 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s--~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl  535 (774)
                      ..+|+++|++|++..|++|.+++.+..     ....+|....++...  .....++|.+.+...   ..++|+++|..|+
T Consensus        18 ~k~WkkryfvL~~~~L~~y~~~~~~~p-----~~~i~l~~~~~~~~~~~~~~~~~~f~l~~~~~---~~~~~~a~s~~e~   89 (113)
T d1plsa_          18 FNTWKPMWVVLLEDGIEFYKKKSDNSP-----KGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQ---QDHFFQAAFLEER   89 (113)
T ss_dssp             SSCCEEEEEEEETTEEEEESSTTCSSC-----SEEEESSSCCEESSCCSSCCSSSEEEEEETTT---EEEEEECSSHHHH
T ss_pred             CCCceEEEEEEECCEEEEEecCCcccc-----ceEEECccCeEEeeecccCCcceEEEEecCCC---eEEEEECCCHHHH
Confidence            457999999999999999998886554     444444433333221  222338899888743   7899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy4897         536 ANWARTLVQATHSC  549 (774)
Q Consensus       536 ~~w~~~l~~~~~~~  549 (774)
                      ..|..+|.+|+...
T Consensus        90 ~~Wi~ai~~ai~~~  103 (113)
T d1plsa_          90 DAWVRDINKAIKCI  103 (113)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999887654

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.38  E-value=2e-07  Score=80.36  Aligned_cols=70  Identities=14%  Similarity=0.171  Sum_probs=56.6

Q ss_pred             CcceEEeCCCCCCCCeEEEEecCC--------ChhhhccCC-CCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEE
Q psy4897         187 GLGISIKGGKENKMPILISKIFKG--------MAADQTEQL-YVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELEV  256 (774)
Q Consensus       187 ~LGfsi~gg~~~~~pi~Is~V~pg--------spA~~aG~L-~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V  256 (774)
                      .+|..+.-.   ...+.|.+|.+|        |||+++| | ++||+|++|||++|.+  ..+++++|+. +|..|.|+|
T Consensus         2 ~lG~d~~~~---~~~~~I~~i~~G~~~~~~~~sPa~~aG-l~k~GD~I~~IdG~~v~~--~~~~~~~l~g~~G~~V~L~i   75 (91)
T d1k32a1           2 RIACDFKLD---GDHYVVAKAYAGDYSNEGEKSPIFEYG-IDPTGYLIEDIDGETVGA--GSNIYRVLSEKAGTSARIRL   75 (91)
T ss_dssp             BCSEEEEEE---TTEEEEEEECBSCTTSTTCBCGGGGGT-CCCTTCEEEEETTEECBT--TBCHHHHHHTTTTSEEEEEE
T ss_pred             cccEEEEEE---CCeEEEEEEecCCCCCcccCChhHhcC-CCCCCCEEEEECCEeecC--cceeEEEEecCCCCEEEEEE
Confidence            345444332   346899999988        9999998 7 8999999999999987  4588899987 889999999


Q ss_pred             EEeccc
Q psy4897         257 KYLREV  262 (774)
Q Consensus       257 ~R~~~~  262 (774)
                      .|.+..
T Consensus        76 ~R~g~~   81 (91)
T d1k32a1          76 SGKGGD   81 (91)
T ss_dssp             ECSSSC
T ss_pred             EeCCCC
Confidence            986543

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.1e-07  Score=80.82  Aligned_cols=81  Identities=14%  Similarity=0.193  Sum_probs=54.6

Q ss_pred             CCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897         457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLA  536 (774)
Q Consensus       457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~  536 (774)
                      ....|+++||+|++..|+.|.....      .|....+|-.+.+.........+||.|.+..  +.++|+|+++|..|+.
T Consensus        20 ~~k~W~kRwfvL~~~~L~y~~~~~~------~~~~~i~l~~~~v~~~~~~~~~~~f~i~~~~--~~~~~~l~A~s~~e~~   91 (101)
T d2elba2          20 VSSTWDRQFYFTQGGNLMSQARGDV------AGGLAMDIDNCSVMAVDCEDRRYCFQITSFD--GKKSSILQAESKKDHE   91 (101)
T ss_dssp             ---CCCEEEEEEETTEEEEECTTCC------CE----EEEECCCCCCCCCCSSSSSEECCCS--SSCCCCEECSSHHHHH
T ss_pred             CccccEEEEEEEeCCEEEEEccCCc------ccceEEEecccccccccccCCcceEEEEeec--ccceEEEECCCHHHHH
Confidence            3567999999999999987765432      2444455544443333333444999998654  4468999999999999


Q ss_pred             HHHHHHHHH
Q psy4897         537 NWARTLVQA  545 (774)
Q Consensus       537 ~w~~~l~~~  545 (774)
                      .|.++|..+
T Consensus        92 ~Wi~al~~v  100 (101)
T d2elba2          92 EWICTINNI  100 (101)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999998764

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=9.2e-07  Score=79.04  Aligned_cols=83  Identities=13%  Similarity=0.180  Sum_probs=54.6

Q ss_pred             CCceEEEEEEeccceeEEe-cCCCCChhcccCcccccceeeEeeeccCC----CCCcEEEEEEeCCCCceeeEEEEecCh
Q psy4897         458 TDRWVSIFGAVTERELRLY-ESAPWSPEAWSTPAHVFPLVSTRLVSSSR----HSDVIVFSVRCGTPQGVATHHLRAETH  532 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y-~~~p~~~~~~~~~~~~~~l~~~r~~~~s~----~~~~~~f~~~~~t~~g~~~~~~~~et~  532 (774)
                      ...|+++||+|++..+++| ...+...  =..|....+|....++...+    .....+|.+.++.    ++|+|.+||.
T Consensus        22 ~k~WkkRwfvL~~~~~~~yy~~~~~~~--~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~i~~~~----r~~~f~A~s~   95 (126)
T d1wi1a_          22 WKRWKKRFFVLVQVSQYTFAMCSYREK--KAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKEG----DTVIFASDDE   95 (126)
T ss_dssp             CCSCEEEEEEEEEEETTEEEEEECCSS--SSCCSEEEECSSCEEEECCCCSSCCSCSSEEEEECSS----CEEEEECSSH
T ss_pred             CCCceEEEEEEeCCceEEEEEcccccc--cccceeeeeeceeeeeeccccccccccceeEEeccCC----eEEEEEECCH
Confidence            4679999999998765443 2222111  13455555554444333211    2223678887763    5899999999


Q ss_pred             hHHHHHHHHHHHHH
Q psy4897         533 RDLANWARTLVQAT  546 (774)
Q Consensus       533 ~dl~~w~~~l~~~~  546 (774)
                      .|+..|..+|.+|+
T Consensus        96 ~e~~~Wv~al~~a~  109 (126)
T d1wi1a_          96 QDRILWVQAMYRAT  109 (126)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999886

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.4e-06  Score=74.63  Aligned_cols=81  Identities=17%  Similarity=0.232  Sum_probs=52.2

Q ss_pred             CCceEEEEEEeccceeEEe--cCCCCChhcccCcccccceeeEeeecc-----CC-CCCcEEEEEEeCCCCceeeEEEEe
Q psy4897         458 TDRWVSIFGAVTERELRLY--ESAPWSPEAWSTPAHVFPLVSTRLVSS-----SR-HSDVIVFSVRCGTPQGVATHHLRA  529 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y--~~~p~~~~~~~~~~~~~~l~~~r~~~~-----s~-~~~~~~f~~~~~t~~g~~~~~~~~  529 (774)
                      ...|+++|++|++..+++|  +......     |.....+....++..     .. ....++|.+.++.+   ..|+|++
T Consensus        15 ~k~WkkR~fvL~~~~~~l~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a   86 (104)
T d2i5fa1          15 RKNWKVRKFILREDPAYLHYYDPAGAED-----PLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADE---VHYFLQA   86 (104)
T ss_dssp             TCCEEEEEEEEETTTTEEEEECTTSCSS-----CSEEEECTTCEEEEECC--------CCSEEEEECTTC---CEEEEEC
T ss_pred             CCCcEEEEEEEECCeeEEEEEcCccccC-----ccceEeecceEEEEeccCcccccccCccEEEEECCCC---eEEEEEc
Confidence            4579999999998765544  4333222     333333322222221     11 12237999988754   7799999


Q ss_pred             cChhHHHHHHHHHHHHH
Q psy4897         530 ETHRDLANWARTLVQAT  546 (774)
Q Consensus       530 et~~dl~~w~~~l~~~~  546 (774)
                      ||..|+..|..+|..|+
T Consensus        87 ~s~~e~~~W~~ai~~a~  103 (104)
T d2i5fa1          87 ATPKERTEWIKAIQMAS  103 (104)
T ss_dssp             SSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999998875

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.31  E-value=1.1e-06  Score=78.13  Aligned_cols=87  Identities=14%  Similarity=0.215  Sum_probs=61.4

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCccccccee---eEeeeccC-CCCCcEEEEEEeCCCCceeeEEEEecChh
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLV---STRLVSSS-RHSDVIVFSVRCGTPQGVATHHLRAETHR  533 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~---~~r~~~~s-~~~~~~~f~~~~~t~~g~~~~~~~~et~~  533 (774)
                      ...|+++||+|++..|++|..++.....-......+..+   ...+.... .....++|.+.+..+   ..++|.+++..
T Consensus        29 ~~~W~kr~~vL~~~~L~yy~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~f~a~s~~  105 (122)
T d1droa_          29 NRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKKHVLRVKLANG---ALFLLQAHDDT  105 (122)
T ss_dssp             CCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCCEECCSSSSSTTEEEEECSSS---CEEEEECSSSH
T ss_pred             CCCceEEEEEEeCCEEEEEcCcccccccCcccccccceEeccceEEEeccccccccceEEEECCCC---cEEEEECCCHH
Confidence            456999999999999999998875544433333332222   22222222 223348999998754   68999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy4897         534 DLANWARTLVQATH  547 (774)
Q Consensus       534 dl~~w~~~l~~~~~  547 (774)
                      |+..|+.+|..++-
T Consensus       106 d~~~Wv~al~~~~~  119 (122)
T d1droa_         106 EMSQWVTSLKAQSD  119 (122)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988763

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=98.28  E-value=4.6e-07  Score=78.45  Aligned_cols=85  Identities=13%  Similarity=0.268  Sum_probs=62.0

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhc-ccCcccccceeeEeeeccC-CCCCcEEEEEEeCCCCceeeEEEEecChhHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEA-WSTPAHVFPLVSTRLVSSS-RHSDVIVFSVRCGTPQGVATHHLRAETHRDL  535 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~-~~~~~~~~~l~~~r~~~~s-~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl  535 (774)
                      ...|+++|++|++..|++|.+++..... ...+....+|..+.++... .....+||.+.+..+   .+|+|+++|..|+
T Consensus        20 ~~~Wk~r~~vL~~~~L~~yk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~f~i~~~~~---~~~~~~a~s~~e~   96 (106)
T d1btna_          20 SRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRLSDG---NEYLFQAKDDEEM   96 (106)
T ss_dssp             CCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEECSSCCSSSSEEEEECTTS---CEEEEECSSHHHH
T ss_pred             CCCCcEEEEEEECCEEEEEeChhhcccccccCcceeEEeccceeeeccccccCcceEeecccCC---CEEEEECCCHHHH
Confidence            4569999999999999999987643322 2344445555444433332 233349999999754   6899999999999


Q ss_pred             HHHHHHHHHH
Q psy4897         536 ANWARTLVQA  545 (774)
Q Consensus       536 ~~w~~~l~~~  545 (774)
                      ..|..+|.+|
T Consensus        97 ~~W~~ai~~A  106 (106)
T d1btna_          97 NTWIQAISSA  106 (106)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999865

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.4e-06  Score=80.66  Aligned_cols=88  Identities=14%  Similarity=0.163  Sum_probs=62.3

Q ss_pred             CCceEEEEEEeccc-----eeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecCh
Q psy4897         458 TDRWVSIFGAVTER-----ELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETH  532 (774)
Q Consensus       458 ~~~w~~~~~~l~~~-----~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~  532 (774)
                      ...|+++||+|++.     .|++|...+.    ...|.....|..+.++........+||.|.+...   ++++|.+|+.
T Consensus        37 ~k~WkkR~fvL~~~~~~~~~L~yy~~~~~----~~~~~g~i~l~~~~~~~~~~~~~~~~F~i~~~~~---~~~~l~A~s~  109 (150)
T d1wg7a_          37 MRSFKRRFFHLIQLGDGSYNLNFYKDEKI----SKEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDK---SSYLLAADSE  109 (150)
T ss_dssp             HSSCEEEEEEEEECSSSCEEEEEESSSCC----SSCCSEEECTTTCCEECCCCSSCTTEEEEECSSS---CEEEEECSSH
T ss_pred             cccceEEEEEEEcCcCCceeEEEEecccc----ccccccccccccccccccCccccceEEEEEcCCC---eEEEEEeCCH
Confidence            36799999999865     3566655442    2345555555544444333334459999987643   6899999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHh
Q psy4897         533 RDLANWARTLVQATHSCVLN  552 (774)
Q Consensus       533 ~dl~~w~~~l~~~~~~~~~~  552 (774)
                      .|+..|..+|.+++....+.
T Consensus       110 ~e~~~Wi~aL~~~i~~~~~~  129 (150)
T d1wg7a_         110 VEMEEWITILNKILQLNFEA  129 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhh
Confidence            99999999999988766544

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=9.6e-07  Score=77.53  Aligned_cols=83  Identities=11%  Similarity=0.138  Sum_probs=55.9

Q ss_pred             CCceEEEEEEecc--ceeEEecCCCCChhcccCcccccceeeEeeecc-----CCCCCcEEEEEEeCCCCceeeEEEEec
Q psy4897         458 TDRWVSIFGAVTE--RELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS-----SRHSDVIVFSVRCGTPQGVATHHLRAE  530 (774)
Q Consensus       458 ~~~w~~~~~~l~~--~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~-----s~~~~~~~f~~~~~t~~g~~~~~~~~e  530 (774)
                      ...|+++||+|+.  ..||+|..++........++..+..+  .+...     ......++|.+.++.    ++|+|++|
T Consensus        21 ~k~WkkR~fvL~~~~~~L~~~~~~~~~~p~g~i~l~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~   94 (117)
T d1v5ua_          21 MKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAV--APGTPTIGAPKTVDEKAFFDVKTTR----RVYNFCAQ   94 (117)
T ss_dssp             SSCCEEEEEEEETTTTEEEEESSSSCSSCCCEEEGGGEEEE--ECCCCCTTSCSSSCTTTCEEEEESS----CEEEEECS
T ss_pred             CCCceEEEEEEeCCCCEEEecccccccCcceEEEecceEEE--eecccccccccccccceEEEeeCCC----cEEEEEeC
Confidence            4579999999964  56999999886543333333333221  11111     111122788887764    58999999


Q ss_pred             ChhHHHHHHHHHHHHH
Q psy4897         531 THRDLANWARTLVQAT  546 (774)
Q Consensus       531 t~~dl~~w~~~l~~~~  546 (774)
                      |..|+..|..+|.+++
T Consensus        95 s~~e~~~Wv~~l~~ai  110 (117)
T d1v5ua_          95 DVPSAQQWVDRIQSCL  110 (117)
T ss_dssp             SHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999997764

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=98.25  E-value=8.4e-07  Score=78.86  Aligned_cols=89  Identities=13%  Similarity=0.231  Sum_probs=58.2

Q ss_pred             CCCceEEEEEEeccceeEEecCCCCChhcccC-cccccceeeEeeecc-CCCCCcEEEEEEeCCCCceeeEEEEecChhH
Q psy4897         457 STDRWVSIFGAVTERELRLYESAPWSPEAWST-PAHVFPLVSTRLVSS-SRHSDVIVFSVRCGTPQGVATHHLRAETHRD  534 (774)
Q Consensus       457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~-~~~~~~l~~~r~~~~-s~~~~~~~f~~~~~t~~g~~~~~~~~et~~d  534 (774)
                      ....|+++||+|++..||+|.++-.....-.. +.....+..+.+... ......+||.+.+..+   ..|+|+++|..|
T Consensus        28 ~~k~Wkkrw~vL~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~---~~~~l~a~s~~e  104 (123)
T d1wjma_          28 ANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHVFKLGLQDG---KEYLFQAKDEAE  104 (123)
T ss_dssp             SCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEECTTCSSCSSEEEEECSSS---CEEEEECSSHHH
T ss_pred             CCCCCcEEEEEEECCEEEEEecchhccccccccccccccccceeEEecccccccCcEEEEEcCCC---cEEEEECCCHHH
Confidence            35679999999999999999765321111111 111111221221111 1222338999988754   789999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy4897         535 LANWARTLVQATHS  548 (774)
Q Consensus       535 l~~w~~~l~~~~~~  548 (774)
                      +..|.++|.+|++.
T Consensus       105 ~~~Wi~aI~~a~~~  118 (123)
T d1wjma_         105 MSSWLRVVNAAIAS  118 (123)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998874

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=3.1e-06  Score=72.42  Aligned_cols=85  Identities=12%  Similarity=0.196  Sum_probs=58.6

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeecc-CCCCCcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS-SRHSDVIVFSVRCGTPQGVATHHLRAETHRDLA  536 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~-s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~  536 (774)
                      ...|+++|++|++..|++|.++.....-...++..+..+  ..+.. ......++|.+.++.    .+++|+++|..|+.
T Consensus        16 ~~~Wkkr~fvL~~~~l~yy~~~~~~~~~~~i~l~~~~~~--~~~~~~~~~~~~~~f~i~~~~----~~~~~~a~s~~e~~   89 (103)
T d1eaza_          16 MKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKV--QECKQSDIMMRDNLFEIVTTS----RTFYVQADSPEEMH   89 (103)
T ss_dssp             TCCEEEEEEEECSSEEEEESSTTCSSCSEEEEGGGCCEE--EECTTHHHHTCSSEEEEECSS----CEEEEECSSHHHHH
T ss_pred             CCCeeEEEEEEECCEEEEEecccCcccceEEEccceEEe--eccccccccccceEEEEEeCC----EEEEEEeCCHHHHH
Confidence            456999999999999999987764332222222222111  11111 112334899999874    58999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4897         537 NWARTLVQATHS  548 (774)
Q Consensus       537 ~w~~~l~~~~~~  548 (774)
                      .|..+|..|+..
T Consensus        90 ~W~~aI~~ai~~  101 (103)
T d1eaza_          90 SWIKAVSGAIVA  101 (103)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998754

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.1e-06  Score=75.77  Aligned_cols=81  Identities=16%  Similarity=0.228  Sum_probs=62.0

Q ss_pred             ceEEEEEEeccc-------eeEEecCCCCChhcccCcccccceeeEeeecc-CCCCCcEEEEEEeCCCCceeeEEEEecC
Q psy4897         460 RWVSIFGAVTER-------ELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS-SRHSDVIVFSVRCGTPQGVATHHLRAET  531 (774)
Q Consensus       460 ~w~~~~~~l~~~-------~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~-s~~~~~~~f~~~~~t~~g~~~~~~~~et  531 (774)
                      .|+++|++|++.       .|+.|.+.+........|....+|.....+.. ......++|.|.++.    ++|+|.+||
T Consensus        13 ~WkkR~fvL~~~~~~~~~~~L~yy~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~f~i~t~~----r~~~l~A~s   88 (103)
T d1qqga1          13 SMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADSKNKHLVALYTRD----EHFAIAADS   88 (103)
T ss_dssp             TCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECCSSCSSEEEEEESS----CEEEEECSS
T ss_pred             CCCEEEEEEecccccCCccEEEEEcchhhhhcccccccceEecceeeEEeecccCCCceEEEEEeCC----eEEEEEcCC
Confidence            489999999875       48889876655555667777777766554433 344445999999875    579999999


Q ss_pred             hhHHHHHHHHHHH
Q psy4897         532 HRDLANWARTLVQ  544 (774)
Q Consensus       532 ~~dl~~w~~~l~~  544 (774)
                      ..|+..|..+|.+
T Consensus        89 ~~e~~~Wi~al~~  101 (103)
T d1qqga1          89 EAEQDSWYQALLQ  101 (103)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999865

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=2.6e-06  Score=77.83  Aligned_cols=87  Identities=14%  Similarity=0.121  Sum_probs=59.4

Q ss_pred             CCCceEEEEEEeccce------eEEecCCCCChhcccCcccccceeeEeeeccCC-CCCcEEEEEEeCCCCceeeEEEEe
Q psy4897         457 STDRWVSIFGAVTERE------LRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSR-HSDVIVFSVRCGTPQGVATHHLRA  529 (774)
Q Consensus       457 ~~~~w~~~~~~l~~~~------l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~-~~~~~~f~~~~~t~~g~~~~~~~~  529 (774)
                      ...+|+++|+||++..      |+.|.+....+.....++.....  .+.....+ ....++|.|.+.++   ..|+|++
T Consensus        38 ~~~~WkkrwfvL~~~~~~~~~~L~yy~~~~~~k~~g~i~l~~~~~--~~~~~~~~~~~~~~~F~l~t~~~---~~y~f~A  112 (136)
T d1v5ma_          38 GTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLSAIIE--VRTTMPLEMPEKDNTFVLKVENG---AEYILET  112 (136)
T ss_dssp             CSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSSCEETTTCCB--CCCCCCSSSCCCTTEECCBCTTS---CBEEEEC
T ss_pred             CCCCceEEEEEEeCCcccchhhhhhhCcccccCcCcceeccccee--eeeeccccCCCCCcEEEEEcCCC---cEEEEEC
Confidence            4678999999999864      66788776554443333333211  12221112 22349999988765   5699999


Q ss_pred             cChhHHHHHHHHHHHHHHH
Q psy4897         530 ETHRDLANWARTLVQATHS  548 (774)
Q Consensus       530 et~~dl~~w~~~l~~~~~~  548 (774)
                      +|..|+..|.++|..++..
T Consensus       113 ~s~~e~~~Wv~ai~~ai~~  131 (136)
T d1v5ma_         113 IDSLQKHSWVADIQGCVDS  131 (136)
T ss_dssp             SSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhc
Confidence            9999999999999987653

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2e-06  Score=75.91  Aligned_cols=80  Identities=14%  Similarity=0.154  Sum_probs=55.9

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeecc------CCC-CCcEEEEEEeCCCCceeeEEEE--
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS------SRH-SDVIVFSVRCGTPQGVATHHLR--  528 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~------s~~-~~~~~f~~~~~t~~g~~~~~~~--  528 (774)
                      ..+|+++|+||++.+|+.|.+...+     .|...-+|-+...|..      .+. ...|||.|.|+.    +++||.  
T Consensus        14 ~~~wkkRwFvL~~~~L~YYk~~~~~-----~p~g~I~L~~~~~v~~~~~~~~~~~~~~~~~F~I~T~~----rtyy~~~~   84 (112)
T d2coaa1          14 DTLRKRHYWRLDCKCITLFQNNTTN-----RYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTAN----ATYFVGEM   84 (112)
T ss_dssp             SCCCEEEEEEECSSEEEEESSSSCS-----SCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSS----CCCCEECC
T ss_pred             CCCeeEEEEEEEcceEEEEeccCCC-----ccceEEeeeccccccccccccccccCCCccEEEEEeCC----eEEEEecC
Confidence            4679999999999999999998754     4444444433222221      112 233999999885    466664  


Q ss_pred             ---------ecChhHHHHHHHHHHHHH
Q psy4897         529 ---------AETHRDLANWARTLVQAT  546 (774)
Q Consensus       529 ---------~et~~dl~~w~~~l~~~~  546 (774)
                               +|+..|...|+.+|.+|+
T Consensus        85 ~~~~~~~~s~~~~~~~~~W~~aI~~A~  111 (112)
T d2coaa1          85 PGGTPGGPSGQGAEAARGWETAIRQAL  111 (112)
T ss_dssp             SCCCSSSCCCCCSHHHHHHHHHHHHHG
T ss_pred             CccccccccccChHHHHHHHHHHHHhh
Confidence                     477778889999998864

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.20  E-value=8.8e-07  Score=77.88  Aligned_cols=58  Identities=22%  Similarity=0.227  Sum_probs=51.8

Q ss_pred             CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEecc
Q psy4897         200 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLRE  261 (774)
Q Consensus       200 ~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~  261 (774)
                      .|++|..|.+++||++ + |++||+|++|||+.|.+  ..++...|+.  .|+.|+|+|.|...
T Consensus         3 ~Gv~V~~V~~~sPA~~-~-L~~GD~I~~ing~~v~~--~~~l~~~i~~~~~G~~v~l~v~R~~~   62 (103)
T d2hgaa1           3 DGVQIDSVVPGSPASK-V-LTPGLVIESINGMPTSN--LTTYSAALKTISVGEVINITTDQGTF   62 (103)
T ss_dssp             CCEEEEEECSSSGGGG-T-SCTTCEEEEETTEECSS--HHHHHHHHTTCCTTCEEEEEETTEEE
T ss_pred             CcEEEEEECCCChHHh-c-CCCCCEEEEECCEEcCC--HHHHHHHHhhCCCCCEEEEEEEECCE
Confidence            3799999999999985 5 99999999999999987  8999999976  58999999988654

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=98.18  E-value=8.8e-07  Score=75.50  Aligned_cols=61  Identities=16%  Similarity=0.115  Sum_probs=53.9

Q ss_pred             CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccc
Q psy4897         199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREV  262 (774)
Q Consensus       199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~  262 (774)
                      ..|..|..+.++++|+++| |++||+|++|||++|.+  .+++..+++.  .++.++|+|.|.++.
T Consensus        18 ~~G~~v~~v~~~s~~~~aG-l~~GDiI~~ing~~v~~--~~~~~~~~~~~~~~~~~~l~v~R~g~~   80 (87)
T d2i6va1          18 VLGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTD--PNVMNTLFQSMNEMTEMSLTVERDGQQ   80 (87)
T ss_dssp             EEEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTC--HHHHHHHHHTGGGCSEEEEEEEETTEE
T ss_pred             EEEEEEecCCCCCHHHHCC-CCCCCEEEEECCEEeec--HHHHHHHHHhhccccccEEEEEECCEE
Confidence            3467889999999999998 99999999999999988  7888888876  788999999997664

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=2.5e-06  Score=83.03  Aligned_cols=81  Identities=12%  Similarity=0.157  Sum_probs=59.4

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeecc--C--CCCCcEEEEEEeCCCCceeeEEEEecChh
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS--S--RHSDVIVFSVRCGTPQGVATHHLRAETHR  533 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~--s--~~~~~~~f~~~~~t~~g~~~~~~~~et~~  533 (774)
                      ...|+++||+|++..||+|.+.....     |....+|-...++..  .  .....+||.|.++..   ++|+|++||..
T Consensus       121 ~~~Wkkr~fvL~~~~L~yy~~~~~~~-----~~~~i~L~~~~~~~~~~~~~~~~~~~~F~i~~~~~---r~~~f~a~s~~  192 (209)
T d1u5ea1         121 GFEWQKRWCALSKTVFYYYGSDKDKQ-----QKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDK---RIYQFTAASPK  192 (209)
T ss_dssp             TCCCEEEEEEEETTEEEEESSTTCSS-----CSEEEECTTCEEEECGGGCSSTTGGGEEEEECSSS---CEEEEECSSHH
T ss_pred             cccceEEEEEEECCEEEEEecCCCCc-----cceEEEecceeeeeccccccccCCCcEEEEEcCCC---CEEEEEcCCHH
Confidence            46799999999999999999876543     444444433333222  1  112239999988743   78999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy4897         534 DLANWARTLVQAT  546 (774)
Q Consensus       534 dl~~w~~~l~~~~  546 (774)
                      |+..|..+|..++
T Consensus       193 e~~~Wi~al~~~i  205 (209)
T d1u5ea1         193 DAEEWVQQLKFIL  205 (209)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987765

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=2.5e-07  Score=80.02  Aligned_cols=60  Identities=17%  Similarity=0.262  Sum_probs=53.3

Q ss_pred             CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEecc
Q psy4897         199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLRE  261 (774)
Q Consensus       199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~  261 (774)
                      ..|++|..|.+++||+++| |++||+|++|||++|.+  ..++.+++..  .++.+.|+|.|+++
T Consensus        26 ~~Gv~V~~V~~~spA~~aG-l~~gDvI~~i~g~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~   87 (94)
T d1ky9a1          26 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISS--FAALRAQVGTMPVGSKLTLGLLRDGK   87 (94)
T ss_dssp             CCSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCS--SHHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred             CCCcEEEECCCChhHHHhC-CCcccEEEEECCEEeCC--HHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            3589999999999999998 99999999999999988  6788888865  67899999998765

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=2.9e-07  Score=80.36  Aligned_cols=61  Identities=16%  Similarity=0.199  Sum_probs=48.6

Q ss_pred             CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccc
Q psy4897         199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREV  262 (774)
Q Consensus       199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~  262 (774)
                      ..|++|..|.+++||+++| |++||+|++|||++|.+  ..++...+.+  .++.+.|+|.|.++.
T Consensus        25 ~~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~   87 (99)
T d1sota1          25 LQGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDDKQ   87 (99)
T ss_dssp             --CEECCCCCSSSTTTSSS-CCTTCEECBSSSSBCCC--SHHHHHHHHHSCTTCEEEECC-----C
T ss_pred             CCccEEEEecCCCCHHHcC-CCcceEEEEECCEeccc--HHHHHHHHHcCCCCCEEEEEEEECCEE
Confidence            3579999999999999998 99999999999999988  6778777765  678999999987654

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=2.4e-06  Score=74.55  Aligned_cols=83  Identities=13%  Similarity=0.144  Sum_probs=54.5

Q ss_pred             CCceEEEEEEeccceeEEe-cCCCCChhcccCcccccceeeEeeec--c---C----CCCCcEEEEEEeCCCCceeeEEE
Q psy4897         458 TDRWVSIFGAVTERELRLY-ESAPWSPEAWSTPAHVFPLVSTRLVS--S---S----RHSDVIVFSVRCGTPQGVATHHL  527 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y-~~~p~~~~~~~~~~~~~~l~~~r~~~--~---s----~~~~~~~f~~~~~t~~g~~~~~~  527 (774)
                      ...|+++||+|++..+++| ...+..   -..|....+|-...++.  .   +    .....++|.+.++.+   +.++|
T Consensus        24 ~k~WkkR~fvL~~~~~~~~~~~~~~~---~~~p~~~i~L~~~~i~~~~~~~~~~~~~~~~~~~~f~i~~~~~---~~~~f   97 (116)
T d1x1ga1          24 RKNWKVRRFVLRKDPAFLHYYDPSKE---ENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDD---THYYI   97 (116)
T ss_dssp             SSSEEEEEEEEEESSCEEEEECSSSC---CSSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSCEEECCTTC---CCEEE
T ss_pred             CCCCceEEEEEECCCcEEEEeccccc---cccceeEEEcCCCEEEEecccCcccccccccccceeEEEeCCC---eEEEE
Confidence            4679999999998876554 322211   23355455444432211  1   1    111127899988754   67999


Q ss_pred             EecChhHHHHHHHHHHHHH
Q psy4897         528 RAETHRDLANWARTLVQAT  546 (774)
Q Consensus       528 ~~et~~dl~~w~~~l~~~~  546 (774)
                      ++||..|+..|..+|.+.+
T Consensus        98 ~a~s~ee~~~Wi~ai~~~t  116 (116)
T d1x1ga1          98 QASSKAERAEWIEAIKKLT  116 (116)
T ss_dssp             CCSSHHHHHHHHHHHHHHS
T ss_pred             ECCCHHHHHHHHHHHHhhC
Confidence            9999999999999998764

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=6.1e-06  Score=78.16  Aligned_cols=88  Identities=14%  Similarity=0.010  Sum_probs=59.7

Q ss_pred             CCceEEEEEEeccceeEEecCCCCCh----hcccCcccccceeeEeeecc----------------------CCCCCcEE
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSP----EAWSTPAHVFPLVSTRLVSS----------------------SRHSDVIV  511 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~----~~~~~~~~~~~l~~~r~~~~----------------------s~~~~~~~  511 (774)
                      ...|+++|+||++..|+.|.+.....    .-...++..+.++...-...                      ......++
T Consensus        21 ~~~WkrRwFVL~~~~L~Yyk~~~~~~~~~~~kG~I~L~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (169)
T d1btka_          21 PLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYP  100 (169)
T ss_dssp             CCCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---------CCTTHHHHCCCEE
T ss_pred             cCCceEEEEEEECCEEeeeccccccccccCccceEeccceEEEEeecccCCCCccccccccccccccccccccccccCcc
Confidence            45799999999999999998776432    22333333332221100000                      00122399


Q ss_pred             EEEEeCCCCceeeEEEEecChhHHHHHHHHHHHHHHHH
Q psy4897         512 FSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHSC  549 (774)
Q Consensus       512 f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l~~~~~~~  549 (774)
                      |.|.+++    +++||.+||..|+..|.++|.++|-..
T Consensus       101 F~I~t~~----rt~~l~A~s~eE~~~WI~aL~~~i~~~  134 (169)
T d1btka_         101 FQVVYDE----GPLYVFSPTEELRKRWIHQLKNVIRYN  134 (169)
T ss_dssp             EEEEETT----CCEEEEESCHHHHHHHHHHHHHHHTTC
T ss_pred             eEEEeCC----cEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence            9999985    589999999999999999999998643

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=1.9e-05  Score=73.60  Aligned_cols=83  Identities=13%  Similarity=-0.011  Sum_probs=62.7

Q ss_pred             ceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHHHH
Q psy4897         460 RWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLANWA  539 (774)
Q Consensus       460 ~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~w~  539 (774)
                      .|++|||+|++..|++|.+++.....+..++..-    +.+    ...+..+|.|.++.    ++++|.++ ..|+..|+
T Consensus        61 ~wkkR~FvL~~~~L~YYkd~~~~~~kG~I~L~~~----~~v----~~~~~~~F~I~t~~----Rty~l~a~-~~d~~~Wv  127 (147)
T d1w1ha_          61 FARRRQLLLTEGPHLYYVDPVNKVLKGEIPWSQE----LRP----EAKNFKTFFVHTPN----RTYYLMDP-SGNAHKWC  127 (147)
T ss_dssp             SCEEEEEEEETTTEEEEEETTTTEEEEEECCCTT----CEE----EEEETTEEEEECSS----CEEEEECT-TSCHHHHH
T ss_pred             cceEEEEEEcCCeeEEEeCCCcccccceEEeccc----ccc----ccccCceEEEecCc----eEEEEEcC-hHHHHHHH
Confidence            4999999999999999999887666666665432    111    11224799999885    58999875 56999999


Q ss_pred             HHHHHHHHHHHHhccc
Q psy4897         540 RTLVQATHSCVLNQRQ  555 (774)
Q Consensus       540 ~~l~~~~~~~~~~~~~  555 (774)
                      ++|...+..+.+..++
T Consensus       128 ~aI~~v~~~~~~~~~~  143 (147)
T d1w1ha_         128 RKIQEVWRQRYQSHPD  143 (147)
T ss_dssp             HHHHHHHHHHHCSSTT
T ss_pred             HHHHHHHHHHhhhCcc
Confidence            9999988877766554

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.0044  Score=55.51  Aligned_cols=85  Identities=11%  Similarity=0.126  Sum_probs=54.8

Q ss_pred             CCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeecc-CCCCCcEEEEEEeCCCCceeeEEEEecChhHH
Q psy4897         457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS-SRHSDVIVFSVRCGTPQGVATHHLRAETHRDL  535 (774)
Q Consensus       457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~-s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl  535 (774)
                      ..++|+.||+.|-+..|+++..-+-..  -..-...+||....+... .....+++|.+.....   ++++|.++|..|.
T Consensus        40 ~~~~~k~R~~fLF~~~Ll~~k~~~~~~--~~~~k~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~---~~~~l~a~s~eek  114 (132)
T d1v61a_          40 ACEEKEERYFLLFSSVLIMLSASPRMS--GFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTV---ERIVVHCNNNQDF  114 (132)
T ss_dssp             SSSCCCEEEEEECSSCEEEEECSSSSS--CCEEEEEECTTTCBCSTTCSSSSSCCCEEEECSSS---CEEEECCCCSHHH
T ss_pred             cCCCcceEEEEEeCCEEEEEEEcCCCc--eeEEeeecchhhccccccccccCccceEEEeCCCC---CEEEEEcCCHHHH
Confidence            356789999999999999887422110  011111122222222221 1122338999987643   6799999999999


Q ss_pred             HHHHHHHHHHH
Q psy4897         536 ANWARTLVQAT  546 (774)
Q Consensus       536 ~~w~~~l~~~~  546 (774)
                      ..|.++|.+++
T Consensus       115 ~~Wv~~L~~~i  125 (132)
T d1v61a_         115 QEWMEQLNRLT  125 (132)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999876

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.025  Score=47.38  Aligned_cols=55  Identities=25%  Similarity=0.260  Sum_probs=41.0

Q ss_pred             CcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhh
Q psy4897         302 RYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHV  359 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~  359 (774)
                      +.+++.-|..... .....+.++|+|..++  ++.+++|++.+++.+|++||..+|+.
T Consensus        45 g~i~L~~~~~v~~-~~~~~~~~~F~i~~~~--r~~~l~a~s~~~~~~Wi~ai~~~i~~   99 (100)
T d1faoa_          45 RILDLTECSAVQF-DYSQERVNCFCLVFPF--RTFYLCAKTGVEADEWIKILRWKLSQ   99 (100)
T ss_dssp             EEEEGGGCCEEEE-ECSSSSSSEEEEEETT--EEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             eEEechheEEEEe-ccccccccccccccCC--eEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence            4455555544332 2233477899999875  67999999999999999999999874

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.34  E-value=0.052  Score=45.16  Aligned_cols=57  Identities=12%  Similarity=0.193  Sum_probs=43.4

Q ss_pred             CcccceeeEeeecccccCCCCceEEEecCC-CceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         302 RYLPLQLCYLVRNYKHYDSENRTLELHSPD-GVHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~~d~r~r~FeL~s~d-g~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      +.+++..|.+.........+.++|.|..+. +.++++++|++.+++.+|++||..++.
T Consensus        42 ~~i~l~~~~v~~~~~~~~~~~~~f~i~~~~~~~~~~~~~a~s~~e~~~Wi~ai~~~~~   99 (101)
T d2fjla1          42 GVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQ   99 (101)
T ss_dssp             EEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             ceEEcCCceeEeeeeecccccceeEEeccccccEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            455666666655333344577899999875 456899999999999999999998875

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.035  Score=46.41  Aligned_cols=59  Identities=17%  Similarity=0.170  Sum_probs=42.7

Q ss_pred             CcccceeeEeeecccc--cCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhh
Q psy4897         302 RYLPLQLCYLVRNYKH--YDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLT  361 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~--~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~  361 (774)
                      +.+++..|.+......  ...++++|+|...++. +.+++|++.+++.+|+.||+..|..|+
T Consensus        46 ~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~~-~~~f~a~s~~e~~~W~~ai~~~i~~ls  106 (106)
T d1u5da1          46 GTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRR-TYEFTATSPAEARDWVDQISFLLKDLS  106 (106)
T ss_dssp             EEEECTTCEEEECGGGCSSGGGGGEEEEECSSSC-CEEEECSSHHHHHHHHHHHHHHHHHHC
T ss_pred             cccccCCceEeeccccccccCCceeEEEEcCCCc-EEEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence            4455554444443222  2236779999887654 789999999999999999999998763

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.62  E-value=0.019  Score=48.26  Aligned_cols=51  Identities=20%  Similarity=0.408  Sum_probs=38.9

Q ss_pred             cccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHH
Q psy4897         303 YLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHS  355 (774)
Q Consensus       303 ~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~  355 (774)
                      .+++..|.+..  .....+.+||+|...++.++++|+|++.+++.+|+.||+.
T Consensus        49 ~i~l~~~~v~~--~~~~~~~~~f~i~~~~~~~~~~l~A~s~~e~~~Wi~al~~   99 (101)
T d2elba2          49 AMDIDNCSVMA--VDCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINN   99 (101)
T ss_dssp             --EEEECCCCC--CCCCCSSSSSEECCCSSSCCCCEECSSHHHHHHHHHHHHH
T ss_pred             EEEeccccccc--ccccCCcceEEEEeecccceEEEECCCHHHHHHHHHHHHh
Confidence            34455554332  2334578899999999988999999999999999999975

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.36  E-value=0.32  Score=41.70  Aligned_cols=80  Identities=19%  Similarity=0.168  Sum_probs=49.8

Q ss_pred             eEEEEEEecc-ceeEEecCCCCChhcccCcccccceee---Eeeecc--------CCCCCcEEEEEEeCCCCceeeEEEE
Q psy4897         461 WVSIFGAVTE-RELRLYESAPWSPEAWSTPAHVFPLVS---TRLVSS--------SRHSDVIVFSVRCGTPQGVATHHLR  528 (774)
Q Consensus       461 w~~~~~~l~~-~~l~~y~~~p~~~~~~~~~~~~~~l~~---~r~~~~--------s~~~~~~~f~~~~~t~~g~~~~~~~  528 (774)
                      ++.+|+.|.. ..+++|.+..-+   -..+...++|-+   .|..+.        ......+||+|-.++.  .++.+|.
T Consensus        26 ~k~R~f~L~~d~~~i~~~~~~~~---~~~~~~~i~i~~I~~V~~G~~s~~~~~~~~~~~~~~~FsIv~~~~--~r~l~l~  100 (119)
T d1maia_          26 RRERFYKLQEDCKTIWQESRKVM---RSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQ--RNTLDLI  100 (119)
T ss_dssp             EEEEEEEECTTSSEEEECCCCTT---CCTTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEESSS--CCCEEEE
T ss_pred             CEEEEEEEcCCCCEEEEeCCCCC---CCccceEEEHHHceEEEcCCCCchhhhcccCCCcCceEEEEEcCC--CcEEEEE
Confidence            3568888864 455566544222   112234555543   333322        1122238999997754  3689999


Q ss_pred             ecChhHHHHHHHHHHHH
Q psy4897         529 AETHRDLANWARTLVQA  545 (774)
Q Consensus       529 ~et~~dl~~w~~~l~~~  545 (774)
                      ++|..|...|+++|..=
T Consensus       101 a~s~~~~~~Wv~~L~~L  117 (119)
T d1maia_         101 APSPADAQHWVQGLRKI  117 (119)
T ss_dssp             CSSHHHHHHHHHHHHHH
T ss_pred             ECCHHHHHHHHHHHHHH
Confidence            99999999999998753

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.22  E-value=0.17  Score=41.32  Aligned_cols=55  Identities=25%  Similarity=0.314  Sum_probs=39.8

Q ss_pred             cCcccceeeEeeecccc-cCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHh
Q psy4897         301 TRYLPLQLCYLVRNYKH-YDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTL  357 (774)
Q Consensus       301 ~~~ipl~~~~l~R~~~~-~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni  357 (774)
                      .+.+++.-+.+...... ...+.++|.|...  .++.+|+|++.+++.+|++||..++
T Consensus        43 ~~~i~l~~~~~~~~~~~~~~~~~~~F~i~~~--~r~~~l~A~s~~e~~~Wi~aL~~Aa   98 (99)
T d2coca1          43 PRTIPLPSCKLSVPDPEERLDSGHVWKLQWA--KQSWYLSASSAELQQQWLETLSTAA   98 (99)
T ss_dssp             CSEECGGGCEEECCCSSSCCSSSEEEEEEET--TEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             cccccccceeeeecccccccCCceEEEEEcC--CcEEEEECCCHHHHHHHHHHHHHhc
Confidence            34566655555443222 2336779999764  4579999999999999999999876

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.83  E-value=0.15  Score=45.44  Aligned_cols=46  Identities=22%  Similarity=0.307  Sum_probs=37.3

Q ss_pred             CCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhhHHHH
Q psy4897         319 DSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSI  365 (774)
Q Consensus       319 d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~~~~  365 (774)
                      +.++++|+|...+. +.++|+|++.+++.+|++||..++........
T Consensus        86 ~~~~~~F~i~~~~~-~~~~l~A~s~~e~~~Wi~aL~~~i~~~~~~~~  131 (150)
T d1wg7a_          86 KVRRFAFELKMQDK-SSYLLAADSEVEMEEWITILNKILQLNFEAAM  131 (150)
T ss_dssp             SSCTTEEEEECSSS-CEEEEECSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccceEEEEEcCCC-eEEEEEeCCHHHHHHHHHHHHHHHHhhhhhhh
Confidence            45789999987664 47899999999999999999998875554433

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=91.11  E-value=0.16  Score=43.34  Aligned_cols=40  Identities=20%  Similarity=0.453  Sum_probs=34.6

Q ss_pred             CCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhh
Q psy4897         319 DSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHV  359 (774)
Q Consensus       319 d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~  359 (774)
                      ..++++|.+...++. .++|+|++.+++..|++||+.+|..
T Consensus        79 ~~~~~~f~i~~~~~~-~~~l~a~s~~e~~~Wi~aI~~a~~~  118 (123)
T d1wjma_          79 RKRKHVFKLGLQDGK-EYLFQAKDEAEMSSWLRVVNAAIAS  118 (123)
T ss_dssp             SSCSSEEEEECSSSC-EEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cccCcEEEEEcCCCc-EEEEECCCHHHHHHHHHHHHHHHhc
Confidence            347789999887765 7999999999999999999998874

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.96  E-value=0.18  Score=42.26  Aligned_cols=55  Identities=16%  Similarity=0.220  Sum_probs=39.4

Q ss_pred             CcccceeeEeeeccc--ccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHh
Q psy4897         302 RYLPLQLCYLVRNYK--HYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTL  357 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~--~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni  357 (774)
                      +.+++..+.......  ....++++|.|...+++ .++++|++.+++.+|++||...|
T Consensus        54 g~i~L~~~~~~~~~~~~~~~~~~~~f~i~~~~~~-~~~~~a~s~~e~~~W~~ai~~~i  110 (111)
T d1u5fa1          54 GEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKR-IYQFTAASPKDAEEWVQQLKFIL  110 (111)
T ss_dssp             EEEECTTCEEEECTTSCSSTTGGGEEEEECTTSC-EEEEECSSHHHHHHHHHHHHHHC
T ss_pred             eEEEecccEEEeeccccccccccceEEEEccCCc-EEEEEcCCHHHHHHHHHHHHHHh
Confidence            445555444433322  22336789999987754 78999999999999999998765

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.96  E-value=0.27  Score=41.36  Aligned_cols=57  Identities=18%  Similarity=0.188  Sum_probs=41.4

Q ss_pred             CcccceeeEeeecccc-cCCCCceEEEecCCCc------eeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         302 RYLPLQLCYLVRNYKH-YDSENRTLELHSPDGV------HSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~-~d~r~r~FeL~s~dg~------~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      ..+++..+.+...... .....++|+|......      +..+++|++.+++.+|++||+.++.
T Consensus        49 ~~~~l~~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~a~s~ee~~~Wi~aI~~a~~  112 (118)
T d1v89a_          49 GCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAG  112 (118)
T ss_dssp             EEECSTTEEEEEECCCSSCCCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ceeccCceEEEEeccccccCCCcEEEEecCCCcceecCCcEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            3455555555543222 2336789999877654      4689999999999999999998875

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.94  E-value=0.14  Score=43.38  Aligned_cols=57  Identities=14%  Similarity=0.113  Sum_probs=42.2

Q ss_pred             CcccceeeEeeecccccCCCCceEEEecCCC------ceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         302 RYLPLQLCYLVRNYKHYDSENRTLELHSPDG------VHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg------~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      +.+++..+.+..-......+.++|+|..+.+      .++++|+|++.+++.+|++||..++.
T Consensus        46 ~~i~l~~~~v~~~~~~~~~~~~~F~l~~~~~~~~~~~~r~~~l~a~s~ed~~~W~~al~~A~~  108 (111)
T d2dyna_          46 YMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGV  108 (111)
T ss_dssp             EEEECTTEEEEEECCCSTTCSEEEEEEESSCSCSBTTBSSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred             cccccccceeEeeccccccccccEEeeeccccccccCceeEEEECCCHHHHHHHHHHHHHhcc
Confidence            4455555544443334456888999987654      36899999999999999999998764

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.50  E-value=0.31  Score=42.33  Aligned_cols=53  Identities=15%  Similarity=0.397  Sum_probs=39.8

Q ss_pred             cccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         303 YLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       303 ~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      .+++..|.+.. ......+.++|.|...+.  .++++|++.+++.+|+.||..++.
T Consensus        57 ~i~L~~~~v~~-~~~~~~r~~~F~i~~~~~--~~~f~A~s~~e~~~Wi~ai~~a~~  109 (133)
T d2j59m1          57 PISVNACLIDI-SYSETKRKNVFRLTTSDC--ECLFQAEDRDDMLAWIKTIQESSN  109 (133)
T ss_dssp             CEECSSCEEEE-CSSSCSCSSEEEEECSSC--EEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             cceecceEEEE-cccccccCceeEEecCCC--EEEEEeCCHHHHHHHHHHHHHHHh
Confidence            35555565543 122334778999998764  689999999999999999998876

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.34  E-value=0.16  Score=42.48  Aligned_cols=39  Identities=18%  Similarity=0.354  Sum_probs=33.3

Q ss_pred             CCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897         319 DSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH  358 (774)
Q Consensus       319 d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~  358 (774)
                      ..++++|+|...+. ..++++|++.+++.+|++||..++.
T Consensus        65 ~~~~~~F~i~~~~~-~~~~f~a~s~~~~~~Wi~ai~~a~~  103 (109)
T d1wgqa_          65 NSESKVFQLLHKGM-VFYVFKADDAHSTQRWIDAFQEGTV  103 (109)
T ss_dssp             SCSSSEEEEEETTE-EEEEEECSSHHHHHHHHHHHHHHHS
T ss_pred             cccceeeeeecccc-eEEEEECCCHHHHHHHHHHHHHHhc
Confidence            44778999987554 4789999999999999999999875

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.25  E-value=0.26  Score=41.24  Aligned_cols=56  Identities=11%  Similarity=0.294  Sum_probs=40.0

Q ss_pred             ccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhh
Q psy4897         304 LPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVL  360 (774)
Q Consensus       304 ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l  360 (774)
                      +++.-|...........+.++|.|...+++ ..+++|++.+++.+|++||..+|..+
T Consensus        48 i~l~~~~~~~~~~~~~~~~~~f~l~~~~~~-~~~~~a~s~~e~~~Wi~ai~~ai~~~  103 (113)
T d1plsa_          48 IPLKGSTLTSPCQDFGKRMFVFKITTTKQQ-DHFFQAAFLEERDAWVRDINKAIKCI  103 (113)
T ss_dssp             EESSSCCEESSCCSSCCSSSEEEEEETTTE-EEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             EECccCeEEeeecccCCcceEEEEecCCCe-EEEEECCCHHHHHHHHHHHHHHHHhC
Confidence            444444333322233346679999887654 78999999999999999999988754

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.98  E-value=0.52  Score=39.54  Aligned_cols=87  Identities=13%  Similarity=0.127  Sum_probs=54.4

Q ss_pred             eEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCC-CCcEEEEEEeCCCCceeeEEEEecChhHHHHHH
Q psy4897         461 WVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRH-SDVIVFSVRCGTPQGVATHHLRAETHRDLANWA  539 (774)
Q Consensus       461 w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~-~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~w~  539 (774)
                      -+++++.|=+.-|++-.--+-. ..-......+||....++...+. ..+++|.+.+..    ++|+|.++|..|...|.
T Consensus        21 ~~~~~~fLF~d~Ll~~k~~~~~-~~~~~~~~~~~l~~~~v~~~~d~~~~~n~f~i~~~~----~~~~~~a~s~~eK~~W~   95 (109)
T d1zc3b1          21 LQRVHGFLMNDCLLVATWLPQR-RGMYRYNALYPLDRLAVVNVKDNPPMKDMFKLLMFP----ESRIFQAENAKIKREWL   95 (109)
T ss_dssp             EEEEEEEEESSEEEEEEEECCT-TSCEEEEEEEETTTCEEEEECCBTTBSSEEEEEETT----EEEEEECSSHHHHHHHH
T ss_pred             ceeEEEEEecCEEEEEEEcCCc-ceEEEeeeEEeccceEEEEeecccccceEEEEccCC----CEEEEEECCHHHHHHHH
Confidence            3566777776666664322211 11122334455544444322111 223899998763    58999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy4897         540 RTLVQATHSCVLN  552 (774)
Q Consensus       540 ~~l~~~~~~~~~~  552 (774)
                      .+|.+|...+.+.
T Consensus        96 ~~l~~a~~~~~~~  108 (109)
T d1zc3b1          96 EVLEETKRALSDK  108 (109)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999998876653

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.94  E-value=1  Score=40.54  Aligned_cols=87  Identities=8%  Similarity=0.038  Sum_probs=54.1

Q ss_pred             CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeecc-----CCCCC--cEEEEEEeCCCCceeeEEEEec
Q psy4897         458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS-----SRHSD--VIVFSVRCGTPQGVATHHLRAE  530 (774)
Q Consensus       458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~-----s~~~~--~~~f~~~~~t~~g~~~~~~~~e  530 (774)
                      ..+|+.+++.|-+.-|+++..-..... -...-..++|-...+...     .....  .++|.+.+.++  -++|.|.++
T Consensus        40 ~~k~~~r~~fLF~d~Ll~~k~~~~~~~-~y~~k~~i~L~~~~v~~~~~~~~~~~~~~~~~~f~i~~~~~--~~~~~~~A~  116 (162)
T d2dfka2          40 YGRNQQRVFFLFDHQMVLCKKDLIRRD-ILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKET--EEVHLFFAK  116 (162)
T ss_dssp             TCCCEEEEEEEETTEEEEEEECSSCTT-CEEEEEEEEGGGEEEEECCSEECSSSCCEESSEEEEEESSS--SCEEEEECS
T ss_pred             CCCceeEEEEEeCCeEEEEEecCCCCC-ceEEccccchhhceeeecccccccccCccccceEEEEECCC--CeEEEEEeC
Confidence            346789999999998888854322111 112222233333333221     11111  27899987654  257999999


Q ss_pred             ChhHHHHHHHHHHHHHH
Q psy4897         531 THRDLANWARTLVQATH  547 (774)
Q Consensus       531 t~~dl~~w~~~l~~~~~  547 (774)
                      |..|...|..+|..+.-
T Consensus       117 s~~eK~~W~~~l~~~~~  133 (162)
T d2dfka2         117 KLEEKIRWLRAFREERK  133 (162)
T ss_dssp             SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999998753

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.32  E-value=0.23  Score=41.64  Aligned_cols=61  Identities=11%  Similarity=0.098  Sum_probs=42.7

Q ss_pred             CcccceeeEeeeccc--ccCCCCceEEEecCCCc--eeEEEeeCChHhHHHHHHHHHHHhhhhhH
Q psy4897         302 RYLPLQLCYLVRNYK--HYDSENRTLELHSPDGV--HSCILRASDASEASLWFNTLHSTLHVLTL  362 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~--~~d~r~r~FeL~s~dg~--~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~  362 (774)
                      +.+|+..+.+.....  ....+.++|.|...+++  ...++.|++.+++.+|++||..++..+..
T Consensus        49 ~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~f~a~s~~e~~~Wi~ai~~~~~~~~~  113 (118)
T d1unqa_          49 REAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKK  113 (118)
T ss_dssp             HTSCSEEEECTTCEEEEECSSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccceEEeecccccccccCCceEEEEeccccceeEEEEEeCCHHHHHHHHHHHHHHHHHhhc
Confidence            344554444333222  23447789999987766  35788999999999999999999876544

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.09  E-value=0.46  Score=38.91  Aligned_cols=55  Identities=13%  Similarity=0.124  Sum_probs=38.5

Q ss_pred             CcccceeeEeeeccc-ccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHh
Q psy4897         302 RYLPLQLCYLVRNYK-HYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTL  357 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~-~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni  357 (774)
                      ..+++..+.+..... ....++++|.+...+. +.++++|++.+++.+|++||..++
T Consensus        51 ~~i~l~~~~v~~~~~~~~~~~~~~~~i~~~~~-~~~~~~a~s~~e~~~Wi~al~~A~  106 (107)
T d1upqa_          51 GSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGM-RTYVLAADTLEDLRGWLRALGRAS  106 (107)
T ss_dssp             EEEEGGGCEEEECCSSCTTSSSSEEEEECTTS-CCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ceecccceEEEEeccCcccCcceEEEEEcCCC-eEEEEEcCCHHHHHHHHHHHHHHh
Confidence            344555444443222 2333567899887765 479999999999999999998875

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.84  E-value=0.19  Score=44.32  Aligned_cols=39  Identities=18%  Similarity=0.405  Sum_probs=34.2

Q ss_pred             CCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhh
Q psy4897         320 SENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHV  359 (774)
Q Consensus       320 ~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~  359 (774)
                      .++++|.|..++++ ..+++|++.+++.+|++||..+|+.
T Consensus        93 ~~~~~F~l~t~~~~-~y~f~A~s~~e~~~Wv~ai~~ai~~  131 (136)
T d1v5ma_          93 EKDNTFVLKVENGA-EYILETIDSLQKHSWVADIQGCVDS  131 (136)
T ss_dssp             CCTTEECCBCTTSC-BEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCc-EEEEECCCHHHHHHHHHHHHHHHhc
Confidence            47789999888865 5789999999999999999998874

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.78  E-value=0.6  Score=40.86  Aligned_cols=40  Identities=10%  Similarity=0.245  Sum_probs=33.7

Q ss_pred             cCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhh
Q psy4897         318 YDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHV  359 (774)
Q Consensus       318 ~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~  359 (774)
                      .+...++|.|..++  ++++++|++..++.+|++||+..+..
T Consensus        68 ~~~~~~~F~i~~~~--~~~~f~Aes~~e~~~Wi~~I~~v~~~  107 (136)
T d1x1fa1          68 TEKNCAKFTLVLPK--EEVQLKTENTESGEEWRGFILTVTEL  107 (136)
T ss_dssp             TTSCCCEEEEECSS--CCEEEECSSHHHHHHHHHHHHHHHHS
T ss_pred             cccccceeeecCCC--ceEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            34467899998765  45899999999999999999998863

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.48  E-value=0.24  Score=40.99  Aligned_cols=51  Identities=20%  Similarity=0.375  Sum_probs=38.2

Q ss_pred             CcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhh
Q psy4897         302 RYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHV  359 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~  359 (774)
                      +.+++.-+....     ..+.++|.|..++  +.++|+|++.+++..|++||..++..
T Consensus        43 ~~i~L~~~~~~~-----~~~~~~f~i~~~~--~~~~l~a~s~~e~~~Wi~ai~~~i~~   93 (102)
T d2coda1          43 GIIPLSAISTVR-----VQGDNKFEVVTTQ--RTFVFRVEKEEERNDWISILLNALKS   93 (102)
T ss_dssp             CEEETTTEEEEE-----EETTTEEEEEESS--CCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEEchhceeec-----cccceeEEEEcCC--cEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence            345554443333     3467899999865  46899999999999999999988753

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=88.40  E-value=0.3  Score=40.31  Aligned_cols=37  Identities=22%  Similarity=0.505  Sum_probs=32.3

Q ss_pred             CCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHH
Q psy4897         319 DSENRTLELHSPDGVHSCILRASDASEASLWFNTLHST  356 (774)
Q Consensus       319 d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~n  356 (774)
                      ..++++|.|...++. .++++|++..++.+|+.||+.+
T Consensus        70 ~~~~~~f~i~~~~~~-~~~~~a~s~~e~~~W~~ai~~A  106 (106)
T d1btna_          70 KKKKHVFKLRLSDGN-EYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             CSSSSEEEEECTTSC-EEEEECSSHHHHHHHHHHHHHC
T ss_pred             ccCcceEeecccCCC-EEEEECCCHHHHHHHHHHHHhC
Confidence            346789999999876 7899999999999999999864

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.02  E-value=0.35  Score=45.31  Aligned_cols=58  Identities=17%  Similarity=0.208  Sum_probs=42.8

Q ss_pred             CcccceeeEeeecccc--cCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhh
Q psy4897         302 RYLPLQLCYLVRNYKH--YDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVL  360 (774)
Q Consensus       302 ~~ipl~~~~l~R~~~~--~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l  360 (774)
                      +.+++..|.+......  ...+++||.|..++++ .++++|++.+++..|++||...|..|
T Consensus       149 ~~i~L~~~~~~~~~~~~~~~~~~~~F~i~~~~~r-~~~f~a~s~~e~~~Wi~al~~~i~~~  208 (209)
T d1u5ea1         149 GEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKR-IYQFTAASPKDAEEWVQQLKFILQDL  208 (209)
T ss_dssp             EEEECTTCEEEECGGGCSSTTGGGEEEEECSSSC-EEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred             eEEEecceeeeeccccccccCCCcEEEEEcCCCC-EEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence            4556665555443221  2236789999887654 78999999999999999999988765

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.31  E-value=0.47  Score=40.56  Aligned_cols=25  Identities=28%  Similarity=0.551  Sum_probs=22.2

Q ss_pred             eEEEeeCChHhHHHHHHHHHHHhhh
Q psy4897         335 SCILRASDASEASLWFNTLHSTLHV  359 (774)
Q Consensus       335 ~~~Lr~~d~~~~~~W~~Ai~~ni~~  359 (774)
                      .+++++++.+++.+|++||+.+|..
T Consensus       101 ~~~l~A~s~~e~~~Wi~al~~~i~~  125 (130)
T d1v88a_         101 YLIIRATSESDGRCWMDALELALKS  125 (130)
T ss_dssp             CCEEECSSHHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhhc
Confidence            3678999999999999999999864

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.85  E-value=0.45  Score=38.66  Aligned_cols=36  Identities=22%  Similarity=0.445  Sum_probs=31.2

Q ss_pred             CCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHh
Q psy4897         321 ENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTL  357 (774)
Q Consensus       321 r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni  357 (774)
                      ..++|.+...++. .++++|++.+++.+|++||+.+|
T Consensus        68 ~~~~~~~~~~~~~-~~~~~a~s~~e~~~W~~ai~~a~  103 (104)
T d2i5fa1          68 EENLFEIITADEV-HYFLQAATPKERTEWIKAIQMAS  103 (104)
T ss_dssp             CCSEEEEECTTCC-EEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCe-EEEEEcCCHHHHHHHHHHHHHHh
Confidence            5668888877765 68999999999999999999886

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.05  E-value=0.59  Score=39.57  Aligned_cols=39  Identities=23%  Similarity=0.453  Sum_probs=34.1

Q ss_pred             CCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhh
Q psy4897         320 SENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHV  359 (774)
Q Consensus       320 ~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~  359 (774)
                      .+.++|.|...++. ..+|+|++.+++..|+.||+..++.
T Consensus        82 ~~~~~~~l~~~~~~-~~~f~a~s~~d~~~Wv~al~~~~~~  120 (122)
T d1droa_          82 KKKHVLRVKLANGA-LFLLQAHDDTEMSQWVTSLKAQSDS  120 (122)
T ss_dssp             SSTTEEEEECSSSC-EEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred             cccceEEEECCCCc-EEEEECCCHHHHHHHHHHHHHHHhc
Confidence            46789999998765 7889999999999999999998764

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.75  E-value=0.6  Score=37.92  Aligned_cols=38  Identities=11%  Similarity=0.328  Sum_probs=32.2

Q ss_pred             CCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhh
Q psy4897         320 SENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHV  359 (774)
Q Consensus       320 ~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~  359 (774)
                      ...++|.|...+  ++++|+|++.+++.+|++||+.+|..
T Consensus        64 ~~~~~f~i~~~~--~~~~~~a~s~~e~~~W~~aI~~ai~~  101 (103)
T d1eaza_          64 MRDNLFEIVTTS--RTFYVQADSPEEMHSWIKAVSGAIVA  101 (103)
T ss_dssp             TCSSEEEEECSS--CEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEEeCC--EEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            356789998764  57899999999999999999999863

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.21  E-value=0.51  Score=38.25  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=31.3

Q ss_pred             CCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHh
Q psy4897         320 SENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTL  357 (774)
Q Consensus       320 ~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni  357 (774)
                      .++++|.+...++ +..+|+|++.+++..|+++|+.+.
T Consensus        57 ~~~~~f~~~~~~~-~~~~l~A~s~~e~~~Wi~~L~~~t   93 (95)
T d2cofa1          57 DHLYSFRILHKGE-ELAKLEAKSSEEMGHWLGLLLSES   93 (95)
T ss_dssp             TBSCEEEEEETTE-EEEEEECSSHHHHHHHHHHHHHHS
T ss_pred             cceecceeccccc-eeEEeeCCCHHHHHHHHHHHHHHh
Confidence            3667898877665 589999999999999999999875

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.86  E-value=0.63  Score=39.45  Aligned_cols=41  Identities=20%  Similarity=0.280  Sum_probs=34.4

Q ss_pred             cCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhh
Q psy4897         318 YDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHV  359 (774)
Q Consensus       318 ~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~  359 (774)
                      .+.+.++|.+...+++ +++|+|++.+++.+|++||..++..
T Consensus        64 ~~~~~~~f~i~~~~~~-~~~f~a~s~~e~~~W~~al~~a~~~  104 (119)
T d1omwa2          64 QIKERKCLLLKIRGGK-QFVLQCDSDPELVQWKKELRDAYRE  104 (119)
T ss_dssp             ESSSCEEEEEEETTSC-EEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cccccceEEEEcCCCc-EEEEECCCHHHHHHHHHHHHHHHHH
Confidence            4557789999876664 7999999999999999999988663

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.01  E-value=0.97  Score=36.88  Aligned_cols=35  Identities=17%  Similarity=0.387  Sum_probs=29.5

Q ss_pred             CCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHH
Q psy4897         319 DSENRTLELHSPDGVHSCILRASDASEASLWFNTLHS  355 (774)
Q Consensus       319 d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~  355 (774)
                      ..+.++|+|...+  ++.+|+|++.+++..|+.||..
T Consensus        67 ~~~~~~f~i~t~~--r~~~l~A~s~~e~~~Wi~al~~  101 (103)
T d1qqga1          67 SKNKHLVALYTRD--EHFAIAADSEAEQDSWYQALLQ  101 (103)
T ss_dssp             SSCSSEEEEEESS--CEEEEECSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEeCC--eEEEEEcCCHHHHHHHHHHHHh
Confidence            3467899998865  5689999999999999999863

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.27  E-value=0.89  Score=41.24  Aligned_cols=39  Identities=5%  Similarity=0.134  Sum_probs=33.7

Q ss_pred             CCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhh
Q psy4897         319 DSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHV  359 (774)
Q Consensus       319 d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~  359 (774)
                      ...+++|.|..++  ++.+|+|++.+++..|+.||+.+|..
T Consensus        95 ~~~~~~F~I~t~~--rt~~l~A~s~eE~~~WI~aL~~~i~~  133 (169)
T d1btka_          95 ERFPYPFQVVYDE--GPLYVFSPTEELRKRWIHQLKNVIRY  133 (169)
T ss_dssp             HCCCEEEEEEETT--CCEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred             cccCcceEEEeCC--cEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            3467899998765  57999999999999999999999884