Psyllid ID: psy489

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MLEKRPKKDQNKINVVTCKTESGVEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHYQF
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcccEEcccHHHcccccEEcccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mlekrpkkdqnkinVVTCKTESGVEYHVEYFsenstnineeQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHYQF
Flexible Loop (DISEMBL)
mlekrpkkdqnkinvvtcktesgVEYHVEYfsenstnineeqsqrlLDTSEEIERTgkhletgyriaiETEKIATDVLKDLEsqretlqrtrtrlhyqf
Low Complexity Region (SEG)
MLEKRPKKDQNKINVVTCKTESGVEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESqretlqrtrtrlHYQF
Disordered region (IsUnstruct)
************INVVTCKTESGVEYHVEYF****************************LETGYRIAIETEKIATDVL*********************
Disordered Region (DISOPRED)
*****************************************************************IAIETEKIATDVLKDLESQRE*************
Disordered Region (DISEMBL)
**********NKINVVTCKTESGVEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRE*************
Disordered Region (DISPRO)
MLEKRPKKDQNKINVVTCKTESGVEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRL****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLEKRPKKDQNKINVVTCKTESGVEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETxxxxxxxxxxxxxxxxxxxxxxxxxxxxF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
O89116	217	Vesicle transport through	yes	N/A	0.626	0.285	0.451	1e-08
Q96AJ9	217	Vesicle transport through	yes	N/A	0.626	0.285	0.451	3e-08
Q9JI51	224	Vesicle transport through	yes	N/A	0.646	0.285	0.453	1e-07
Q04338	217	t-SNARE VTI1 OS=Saccharom	yes	N/A	0.626	0.285	0.419	4e-07
O88384	232	Vesicle transport through	no	N/A	0.595	0.254	0.409	4e-05
Q9UEU0	232	Vesicle transport through	no	N/A	0.656	0.280	0.397	5e-05
P58200	232	Vesicle transport through	no	N/A	0.595	0.254	0.393	7e-05
Q2KIU0	232	Vesicle transport through	yes	N/A	0.656	0.280	0.382	0.0001

>sp|O89116|VTI1A_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1A OS=Mus musculus GN=Vti1a PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 43/62 (69%)

Query: 34  NSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRT 93
           ++ N +E Q   LLD +E +ER+ + LE GY+IA+ETE+I  ++L++L   RE +QR R 
Sbjct: 106 DAGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARD 165

Query: 94  RL 95
           RL
Sbjct: 166 RL 167

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. Involved in vesicular transport from the late endosomes to the trans-Golgi network. Along with VAMP7, involved in an non-conventional RAB1-dependent traffic route to the cell surface used by KCNIP1 and KCND2. May be concerned with increased secretion of cytokines associated with cellular senescence.
Mus musculus (taxid: 10090)

>sp|Q96AJ9|VTI1A_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=2

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query: 34  NSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRT 93
           +  N +E Q   LLD +E +ER+ + LE GY+IA+ETE+I  ++L++L   RE +QR R 
Sbjct: 106 DDGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARE 165

Query: 94  RL 95
           RL
Sbjct: 166 RL 167

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. Involved in vesicular transport from the late endosomes to the trans-Golgi network. Along with VAMP7, involved in an non-conventional RAB1-dependent traffic route to the cell surface used by KCNIP1 and KCND2. May be involved in increased cytokine secretion associated with cellular senescence.

Homo sapiens (taxid: 9606)

>sp|Q9JI51|VTI1A_RAT Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegicus GN=Vti1a PE=1 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 42/64 (65%)

Query: 32  SENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRT 91
           SEN      E+   LLD +E +ER+ + LE GY+IA+ETE+I  ++L++L   RE +QR 
Sbjct: 111 SENQLIKLREERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRA 170

Query: 92  RTRL 95
           R RL
Sbjct: 171 RERL 174

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. Involved in vesicular transport from the late endosomes to the trans-Golgi network. Along with VAMP7, involved in an non-conventional RAB1-dependent traffic route to the cell surface used by KCNIP1 and KCND2 (By similarity). May be concerned with increased secretion of cytokines associated with cellular senescence.

Rattus norvegicus (taxid: 10116)

>sp|Q04338|VTI1_YEAST t-SNARE VTI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTI1 PE=1 SV=3

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 41/62 (66%)

Query: 34  NSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRT 93
           N++NI+++Q Q+LL     ++++G  L+   RIA ETE I + ++ DL SQRETL+  R 
Sbjct: 108 NASNIDDDQRQQLLSNHAILQKSGDRLKDASRIANETEGIGSQIMMDLRSQRETLENARQ 167

Query: 94  RL 95
            L
Sbjct: 168 TL 169

t-SNARE found in various SNARE complexes involved in multiple transport pathways. The composition of the t-SNARE complexes is specific for a limited number of v-SNAREs and therefore allows only the vesicles carrying the matching v-SNARE to fuse.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O88384|VTI1B_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1B OS=Mus musculus GN=Vti1b PE=1 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 43/61 (70%), Gaps = 2/61 (3%)

Query: 37  NINEEQSQR--LLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTR 94
           ++N  QSQR  LL  +E + R  + +E  +RIA ET++I T+++++L  QR+ L+RT++R
Sbjct: 121 HLNRLQSQRALLLQGTESLNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSR 180

Query: 95  L 95
           L
Sbjct: 181 L 181

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers.

Mus musculus (taxid: 10090)

>sp|Q9UEU0|VTI1B_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1B OS=Homo sapiens GN=VTI1B PE=1 SV=3

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 46/68 (67%), Gaps = 3/68 (4%)

Query: 30  YFSENSTNINEEQSQR--LLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRET 87
           Y  EN  ++N  QSQR  LL  +E + R  + +E  +RIA ET++I ++++++L  QR+ 
Sbjct: 115 YAVENE-HMNRLQSQRAMLLQGTESLNRATQSIERSHRIATETDQIGSEIIEELGEQRDQ 173

Query: 88  LQRTRTRL 95
           L+RT++RL
Sbjct: 174 LERTKSRL 181

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. May be concerned with increased secretion of cytokines associated with cellular senescence.

Homo sapiens (taxid: 9606)

>sp|P58200|VTI1B_RAT Vesicle transport through interaction with t-SNAREs homolog 1B OS=Rattus norvegicus GN=Vti1b PE=1 SV=2

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 43/61 (70%), Gaps = 2/61 (3%)

Query: 37  NINEEQSQR--LLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTR 94
           ++N  QSQR  LL  +E + R  + +E  +RIA ET++I ++++++L  QR+ L+RT++R
Sbjct: 121 HLNRLQSQRALLLQGTESLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKSR 180

Query: 95  L 95
           L
Sbjct: 181 L 181

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers.

Rattus norvegicus (taxid: 10116)

>sp|Q2KIU0|VTI1B_BOVIN Vesicle transport through interaction with t-SNAREs homolog 1B OS=Bos taurus GN=VTI1B PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 46/68 (67%), Gaps = 3/68 (4%)

Query: 30  YFSENSTNINEEQSQR--LLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRET 87
           Y  EN  ++N  QSQR  LL  ++ + R  + +E  +RIA ET++I ++++++L  QR+ 
Sbjct: 115 YAVENE-HMNRLQSQRALLLQGTDSLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQ 173

Query: 88  LQRTRTRL 95
           L+RT++RL
Sbjct: 174 LERTKSRL 181

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. May be concerned with increased secretion of cytokines associated with cellular senescence.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
307211961	174	Vesicle transport through interaction wi	0.636	0.362	0.587	3e-13
307178357	219	Vesicle transport through interaction wi	0.747	0.337	0.526	1e-12
383857557	217	PREDICTED: vesicle transport through int	0.808	0.368	0.473	2e-12
332026915	217	Vesicle transport through interaction wi	0.606	0.276	0.583	4e-12
58379575	216	AGAP009322-PA [Anopheles gambiae str. PE	0.818	0.375	0.457	5e-12
350422666	219	PREDICTED: vesicle transport through int	0.606	0.273	0.583	6e-12
340723947	219	PREDICTED: vesicle transport through int	0.606	0.273	0.583	6e-12
270012334	211	hypothetical protein TcasGA2_TC006472 [T	0.636	0.298	0.555	7e-12
322778811	226	hypothetical protein SINV_07175 [Solenop	0.797	0.349	0.446	7e-12
91088835	218	PREDICTED: similar to CG3279 CG3279-PA [	0.636	0.288	0.555	7e-12

>gi|307211961|gb|EFN87873.1| Vesicle transport through interaction with t-SNAREs-like protein 1A [Harpegnathos saltator]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 49/63 (77%)

Query: 37  NINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLH 96
           N+ E+Q +RLLD SE+IERTG+ L+ GYR+A+ETE+I + VLK+L  QRET+QR R R  
Sbjct: 110 NVTEDQRKRLLDASEKIERTGRTLQNGYRMALETEEIGSQVLKELHEQRETIQRGRGRAS 169

Query: 97  YQF 99
           YQ 
Sbjct: 170 YQL 172

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178357|gb|EFN67106.1| Vesicle transport through interaction with t-SNAREs-like protein 1A [Camponotus floridanus]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 55/76 (72%), Gaps = 2/76 (2%)

Query: 21  ESGVEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKD 80
           E  +E  V+   +N  N+ E+Q +RLLD SE IERTG+ L+ GYR+A+ETE+I + VLK+
Sbjct: 96  EDAIEITVDESWDN--NVTEDQRKRLLDASERIERTGRTLQNGYRMALETEEIGSQVLKE 153

Query: 81  LESQRETLQRTRTRLH 96
           L  QRET+QR+R RL 
Sbjct: 154 LHEQRETIQRSRGRLR 169

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857557|ref|XP_003704271.1| PREDICTED: vesicle transport through interaction with t-SNAREs homolog 1A-like [Megachile rotundata]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 58/95 (61%), Gaps = 15/95 (15%)

Query: 2   LEKRPKKDQNKINVVTCKTESGVEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLE 61
           L K+PK D              +E   E   EN  NI E+Q +RLLDTSE I+R+G+ L+
Sbjct: 90  LAKKPKDD-------------SIEIGREDSWEN--NITEDQKKRLLDTSERIDRSGRTLQ 134

Query: 62  TGYRIAIETEKIATDVLKDLESQRETLQRTRTRLH 96
            GYR+ +ETE+I T VLK+L  QRET+QR R RL 
Sbjct: 135 NGYRMVLETEEIGTQVLKELHDQRETIQRGRARLR 169

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026915|gb|EGI67016.1| Vesicle transport through interaction with t-SNAREs-like protein 1A [Acromyrmex echinatior]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 48/60 (80%)

Query: 37  NINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLH 96
           N+ E+Q +RLLD SE IER+G+ L+ GYR+A+ETE+I + VLK+L  QRET+QR+R RL 
Sbjct: 110 NVTEDQRKRLLDASERIERSGRTLQNGYRMALETEEIGSQVLKELHEQRETIQRSRGRLR 169

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58379575|ref|XP_309991.2| AGAP009322-PA [Anopheles gambiae str. PEST] gi|55244139|gb|EAA05799.2| AGAP009322-PA [Anopheles gambiae str. PEST]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 54/83 (65%), Gaps = 2/83 (2%)

Query: 14  NVVTCKTESGVEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKI 73
           N    ++++G +  V+ F E    I E+Q +RLLD +E +ERT  +L   YRI++ETE+I
Sbjct: 89  NAKVARSKAGYDSSVDDFDE--IGIQEDQKRRLLDNTERMERTSNYLNDAYRISVETEQI 146

Query: 74  ATDVLKDLESQRETLQRTRTRLH 96
            T VL DL  QRET+QR+R RL 
Sbjct: 147 GTQVLADLSQQRETIQRSRGRLR 169

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422666|ref|XP_003493243.1| PREDICTED: vesicle transport through interaction with t-SNAREs homolog 1A-like [Bombus impatiens]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 48/60 (80%)

Query: 37  NINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLH 96
           NI E+Q +RLLDTSE+I+RTG+ L+ GYR+ +ETE+I + VLK+L  QRET+Q+ R RL 
Sbjct: 110 NITEDQKKRLLDTSEQIDRTGRTLQNGYRMVLETEEIGSQVLKELHEQRETIQKGRARLR 169

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723947|ref|XP_003400348.1| PREDICTED: vesicle transport through interaction with t-SNAREs homolog 1A-like [Bombus terrestris]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 48/60 (80%)

Query: 37  NINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLH 96
           NI E+Q +RLLDTSE+I+RTG+ L+ GYR+ +ETE+I + VLK+L  QRET+Q+ R RL 
Sbjct: 110 NITEDQKKRLLDTSEQIDRTGRTLQNGYRMVLETEEIGSQVLKELHEQRETIQKGRARLR 169

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270012334|gb|EFA08782.1| hypothetical protein TcasGA2_TC006472 [Tribolium castaneum]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 47/63 (74%)

Query: 34  NSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRT 93
           N   I+ +Q QRLLD SE +ERTG+ LE GYR+ +ET+ I T VL++L  QRET++RTR+
Sbjct: 101 NDVRISSDQKQRLLDNSERMERTGRQLEEGYRVVLETQDIGTQVLQNLNEQRETIKRTRS 160

Query: 94  RLH 96
           RL 
Sbjct: 161 RLR 163

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322778811|gb|EFZ09227.1| hypothetical protein SINV_07175 [Solenopsis invicta]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 62/94 (65%), Gaps = 15/94 (15%)

Query: 2   LEKRPKKDQNKINVVTCKTESGVEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLE 61
           + K+PK+D  +I V             E   +N  N+ E+Q +RLLD SE+IER+G+ L+
Sbjct: 99  MAKKPKEDVMEITV-------------EESWDN--NVTEDQRKRLLDASEKIERSGRTLQ 143

Query: 62  TGYRIAIETEKIATDVLKDLESQRETLQRTRTRL 95
            GYR+A+ETE+I + VLK+L  QRET+QR+R +L
Sbjct: 144 NGYRMALETEEIGSQVLKELHEQRETIQRSRGKL 177

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088835|ref|XP_970611.1| PREDICTED: similar to CG3279 CG3279-PA [Tribolium castaneum]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 47/63 (74%)

Query: 34  NSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRT 93
           N   I+ +Q QRLLD SE +ERTG+ LE GYR+ +ET+ I T VL++L  QRET++RTR+
Sbjct: 108 NDVRISSDQKQRLLDNSERMERTGRQLEEGYRVVLETQDIGTQVLQNLNEQRETIKRTRS 167

Query: 94  RLH 96
           RL 
Sbjct: 168 RLR 170

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
FB|FBgn0260862	230	Vti1 [Drosophila melanogaster	0.505	0.217	0.54	3.9e-09
MGI|MGI:1855699	217	Vti1a "vesicle transport throu	0.737	0.336	0.358	5.1e-07
UNIPROTKB|E1BYU6	187	VTI1A "Uncharacterized protein	0.454	0.240	0.466	6.1e-07
UNIPROTKB|J9NRK3	217	VTI1A "Uncharacterized protein	0.737	0.336	0.358	6.7e-07
UNIPROTKB|Q96AJ9	217	VTI1A "Vesicle transport throu	0.737	0.336	0.358	6.7e-07
ZFIN|ZDB-GENE-050809-135	191	vti1a "vesicle transport throu	0.585	0.303	0.372	8.7e-07
RGD|621490	224	Vti1a "vesicle transport throu	0.505	0.223	0.44	2.8e-06
UNIPROTKB|F1S5L0	152	VTI1A "Uncharacterized protein	0.646	0.421	0.362	3.9e-05
UNIPROTKB|E1BUX5	232	VTI1B "Uncharacterized protein	0.474	0.202	0.423	0.00012
SGD|S000004810	217	VTI1 "Protein involved in cis-	0.505	0.230	0.38	0.00013

FB|FBgn0260862 Vti1 [Drosophila melanogaster (taxid:7227)]

 Score = 136 (52.9 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 27/50 (54%), Positives = 34/50 (68%)

Query:    32 SENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDL 81
             S    +I+ +Q QRLLD SE IERTG  L  GYR+A+ETE++   VL DL
Sbjct:   110 SYEDVSISTDQRQRLLDNSERIERTGNRLTEGYRVALETEQLGAQVLNDL 159

GO:0005484 "SNAP receptor activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=IEA

MGI|MGI:1855699 Vti1a "vesicle transport through interaction with t-SNAREs 1A" [Mus musculus (taxid:10090)]

 Score = 117 (46.2 bits), Expect = 5.1e-07, P = 5.1e-07
 Identities = 28/78 (35%), Positives = 47/78 (60%)

Query:     7 KKDQNKINVVTCKTESGVEYHVEYFSE---NSTNINEEQSQRLLDTSEEIERTGKHLETG 63
             K++  K+   T    S + Y  E  +E   ++ N +E Q   LLD +E +ER+ + LE G
Sbjct:    78 KQEMGKLE--TDFKRSRIAYSDEVRNELLGDAGNSSENQRAHLLDNTERLERSSRRLEAG 135

Query:    64 YRIAIETEKIATDVLKDL 81
             Y+IA+ETE+I  ++L++L
Sbjct:   136 YQIAVETEQIGQEMLENL 153

GO:0005484 "SNAP receptor activity" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=ISO

GO:0031201 "SNARE complex" evidence=ISO

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=ISO

UNIPROTKB|E1BYU6 VTI1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 21/45 (46%), Positives = 33/45 (73%)

Query:    37 NINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDL 81
             N +E Q   LLD +E +ER+ + LE GY+IA+ETE+I  ++L++L
Sbjct:   109 NSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENL 153

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

UNIPROTKB|J9NRK3 VTI1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 116 (45.9 bits), Expect = 6.7e-07, P = 6.7e-07
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query:     7 KKDQNKINVVTCKTESGVEYHVEYFSE---NSTNINEEQSQRLLDTSEEIERTGKHLETG 63
             K++  K+   T    S + Y  E  +E   +  N +E Q   LLD +E +ER+ + LE G
Sbjct:    78 KQEMGKLE--TDFKRSRIAYSDEVRNELLGDDGNSSENQRAHLLDNTERLERSSRRLEAG 135

Query:    64 YRIAIETEKIATDVLKDL 81
             Y+IA+ETE+I  ++L++L
Sbjct:   136 YQIAVETEQIGQEMLENL 153

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|Q96AJ9 VTI1A "Vesicle transport through interaction with t-SNAREs homolog 1A" [Homo sapiens (taxid:9606)]

 Score = 116 (45.9 bits), Expect = 6.7e-07, P = 6.7e-07
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query:     7 KKDQNKINVVTCKTESGVEYHVEYFSE---NSTNINEEQSQRLLDTSEEIERTGKHLETG 63
             K++  K+   T    S + Y  E  +E   +  N +E Q   LLD +E +ER+ + LE G
Sbjct:    78 KQEMGKLE--TDFKRSRIAYSDEVRNELLGDDGNSSENQRAHLLDNTERLERSSRRLEAG 135

Query:    64 YRIAIETEKIATDVLKDL 81
             Y+IA+ETE+I  ++L++L
Sbjct:   136 YQIAVETEQIGQEMLENL 153

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IMP;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005484 "SNAP receptor activity" evidence=IDA

GO:0031201 "SNARE complex" evidence=TAS

ZFIN|ZDB-GENE-050809-135 vti1a "vesicle transport through interaction with t-SNAREs homolog 1A (yeast)" [Danio rerio (taxid:7955)]

 Score = 113 (44.8 bits), Expect = 8.7e-07, P = 8.7e-07
 Identities = 22/59 (37%), Positives = 38/59 (64%)

Query:    25 EYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLES 83
             E   E   ++ ++ +E Q   LLD +E +ER+ + LE GY+IA+ETE++  ++L +L S
Sbjct:    98 EVRNELLGDDGSS-SETQRAHLLDNTERLERSSRRLEAGYQIAVETEQVGQEILANLHS 155

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

RGD|621490 Vti1a "vesicle transport through interaction with t-SNAREs 1A" [Rattus norvegicus (taxid:10116)]

 Score = 111 (44.1 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 22/50 (44%), Positives = 34/50 (68%)

Query:    32 SENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDL 81
             SEN      E+   LLD +E +ER+ + LE GY+IA+ETE+I  ++L++L
Sbjct:   111 SENQLIKLREERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENL 160

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0031201 "SNARE complex" evidence=IDA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO;ISS

GO:0043025 "neuronal cell body" evidence=IDA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IDA

UNIPROTKB|F1S5L0 VTI1A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 25/69 (36%), Positives = 38/69 (55%)

Query:     7 KKDQNKINVVTCKTESGVEYHVEYFSE---NSTNINEEQSQRLLDTSEEIERTGKHLETG 63
             K++  K+   T    S + Y  E  +E   +  N +E Q   LLD +E +ER+ + LE G
Sbjct:    78 KQEMGKLE--TDFKRSRIAYSDEVRNELLGDDGNSSENQRAHLLDNTERLERSSRRLEAG 135

Query:    64 YRIAIETEK 72
             Y+IA+ET K
Sbjct:   136 YQIAVETGK 144

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E1BUX5 VTI1B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 97 (39.2 bits), Expect = 0.00012, P = 0.00012
 Identities = 22/52 (42%), Positives = 35/52 (67%)

Query:    32 SENSTNINEEQSQR--LLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDL 81
             +E STN+   QSQR  LL  +E + R  + +E  +RIA ET++I TD++++L
Sbjct:   119 NEQSTNL---QSQRVLLLQGTESLNRASQSIERSHRIAAETDQIGTDIIEEL 167

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

SGD|S000004810 VTI1 "Protein involved in cis-Golgi membrane traffic" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 96 (38.9 bits), Expect = 0.00013, P = 0.00013
 Identities = 19/50 (38%), Positives = 33/50 (66%)

Query:    34 NSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLES 83
             N++NI+++Q Q+LL     ++++G  L+   RIA ETE I + ++ DL S
Sbjct:   108 NASNIDDDQRQQLLSNHAILQKSGDRLKDASRIANETEGIGSQIMMDLRS 157

GO:0005484 "SNAP receptor activity" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IMP

GO:0006896 "Golgi to vacuole transport" evidence=IMP

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0042144 "vacuole fusion, non-autophagic" evidence=IMP

GO:0031201 "SNARE complex" evidence=IPI

GO:0030173 "integral to Golgi membrane" evidence=IDA

GO:0006906 "vesicle fusion" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	99
pfam12352	66	pfam12352, V-SNARE_C, Snare region anchored in the	6e-08

>gnl|CDD|152787 pfam12352, V-SNARE_C, Snare region anchored in the vesicle membrane C-terminus

 Score = 44.9 bits (107), Expect = 6e-08
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 51 EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLH 96
          E + R    L+  +RIA ET  I   +L+DL SQRETL+R R +LH
Sbjct: 1  ERLLREHDRLKNSHRIADETISIGQAILEDLHSQRETLKRARNKLH 46

Within the SNARE proteins interactions in the C-terminal half of the SNARE helix are critical to the driving of membrane fusion; whereas interactions in the N-terminal half of the SNARE domain are important for promoting priming or docking of the vesicle pfam05008. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
KOG1666|consensus	220		99.91
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	99.16
KOG3065|consensus	273		96.21
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	95.33
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	89.77
KOG3251|consensus	213		85.71

>KOG1666|consensus

Probab=99.91  E-value=3.6e-24  Score=164.07  Aligned_cols=93  Identities=37%  Similarity=0.526  Sum_probs=83.3

Q ss_pred             chhhhhhhhhHHhhhhch---hhhHHhhhcC---CCCCcCHHHHHHHHhhhHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q psy489            6 PKKDQNKINVVTCKTESG---VEYHVEYFSE---NSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLK   79 (99)
Q Consensus         6 ~k~~~~~l~~~~~~l~~~---~~~R~eL~~~---~~~~~s~~qR~~LL~~terL~rts~rL~~s~ria~ETE~iG~~Il~   79 (99)
                      -|+++++|....+++.+.   ..+|+++++.   ++...+.+||++||+||++|+||+++|++|+|||.|||+||++|++
T Consensus        77 yksdl~~l~~e~k~~~~~~~~~~~rde~~~~~~add~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~ETEqIG~~IL~  156 (220)
T KOG1666|consen   77 YKSDLKKLKRELKRTTSRNLNAGDRDELLEALEADDQNISADQRARLLQNTERLERSTDRLKDSQRIALETEQIGSEILE  156 (220)
T ss_pred             HHHHHHHHHHHHHHhhccccccchHHHHHhhhhccccccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999998853   4459999863   2346789999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHhhhhhhhc
Q psy489           80 DLESQRETLQRTRTRLHYQ   98 (99)
Q Consensus        80 dL~~QRE~i~rtr~rl~~t   98 (99)
                      ||+.|||+|+||+.+|++|
T Consensus       157 dL~~QRe~L~rar~rL~~t  175 (220)
T KOG1666|consen  157 DLHGQREQLERARERLRET  175 (220)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999986

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=99.16  E-value=1e-10  Score=73.07  Aligned_cols=48  Identities=40%  Similarity=0.545  Sum_probs=45.5

Q ss_pred             HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhc
Q psy489           51 EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHYQ   98 (99)
Q Consensus        51 erL~rts~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~t   98 (99)
                      |.|.+++++|.+|.+++.||+++|.+|+.+|..|||+|.+++.+|.+.
T Consensus         1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i   48 (66)
T PF12352_consen    1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDI   48 (66)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999763

>KOG3065|consensus

Probab=96.21  E-value=0.025  Score=45.14  Aligned_cols=56  Identities=21%  Similarity=0.200  Sum_probs=46.7

Q ss_pred             HHHHHHhhh-HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Q psy489           42 QSQRLLDTS-EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHY   97 (99)
Q Consensus        42 qR~~LL~~t-erL~rts~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~   97 (99)
                      ..+.|.... ..-..|..+-.++..+|.|++.+|..++..|..|+|+|.++...+..
T Consensus        62 ~~~~l~~e~~~~~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~  118 (273)
T KOG3065|consen   62 EVDELEQEIESTAQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDD  118 (273)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhh
Confidence            444554444 55677888888999999999999999999999999999999988764

>smart00397 t_SNARE Helical region found in SNAREs

Probab=95.33  E-value=0.14  Score=30.20  Aligned_cols=49  Identities=24%  Similarity=0.214  Sum_probs=43.3

Q ss_pred             hHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhc
Q psy489           50 SEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHYQ   98 (99)
Q Consensus        50 terL~rts~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~t   98 (99)
                      ...++...+.|......+.|...+|..|...+..|.+.|.+....+..+
T Consensus         4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~   52 (66)
T smart00397        4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDA   52 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            3567788888999999999999999999999999999999988877653

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=89.77  E-value=1.7  Score=28.54  Aligned_cols=43  Identities=16%  Similarity=0.154  Sum_probs=37.7

Q ss_pred             HhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Q psy489           55 RTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHY   97 (99)
Q Consensus        55 rts~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~   97 (99)
                      ..++.|.++++++.++-+-|...++.|.++-++|..+.+.+.+
T Consensus         5 ~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~   47 (92)
T PF03908_consen    5 DVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDG   47 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4577899999999999999999999999999999999887653

>KOG3251|consensus

Probab=85.71  E-value=2.2  Score=33.27  Aligned_cols=40  Identities=20%  Similarity=0.254  Sum_probs=32.3

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Q psy489           58 KHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHY   97 (99)
Q Consensus        58 ~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~   97 (99)
                      +.|..|++.+.+.=.-|.+|+++|..||-.|.+|+.++++
T Consensus       129 d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~  168 (213)
T KOG3251|consen  129 DSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILD  168 (213)
T ss_pred             hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555566666677999999999999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	99
2nps_C	81	Crystal Structure Of The Early Endosomal Snare Comp		3e-05

>pdb|2NPS|C Chain C, Crystal Structure Of The Early Endosomal Snare Complex Length = 81

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 29/36 (80%)
Query: 46 LLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDL 81
          LLD +E +ER+ + LE GY+IA+ETE+I  ++L++L
Sbjct: 7  LLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENL 42

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	99
2nps_C	81	Vesicle transport through interaction with T- snar	4e-12
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	1e-10

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 81

 Score = 55.6 bits (134), Expect = 4e-12
 Identities = 25/55 (45%), Positives = 37/55 (67%)

Query: 42 QSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLH 96
              LLD +E +ER+ + LE GY+IA+ETE+I  ++L++L   RE +QR R RL 
Sbjct: 3  MRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLR 57

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65

 Score = 51.7 bits (124), Expect = 1e-10
 Identities = 17/44 (38%), Positives = 32/44 (72%)

Query: 53 IERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLH 96
          + R  + +E  +RIA ET++I T+++++L  QR+ L+RT++RL 
Sbjct: 4  MNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLV 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
2nps_C	81	Vesicle transport through interaction with T- snar	99.81
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	99.63
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	99.27
1nhl_A	54	Synaptosomal-associated protein 23; snare, coiled-	98.79
3b5n_C	70	Protein transport protein SEC9; snare complex, syn	98.1
1l4a_C	83	S-SNAP25 fusion protein; snare, snare complex, mem	97.99

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=99.81  E-value=2.3e-20  Score=122.60  Aligned_cols=58  Identities=43%  Similarity=0.749  Sum_probs=56.0

Q ss_pred             HHHHHHHhhhHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhc
Q psy489           41 EQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHYQ   98 (99)
Q Consensus        41 ~qR~~LL~~terL~rts~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~t   98 (99)
                      +||++||+++++|++|+++|.+|+++|+|||+||.+|+.+|+.|||+|++++++|+++
T Consensus         2 ~qR~~Ll~~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~   59 (81)
T 2nps_C            2 SMRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRET   59 (81)
T ss_dssp             TTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Confidence            4899999999999999999999999999999999999999999999999999999864

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=99.63  E-value=2.4e-16  Score=99.56  Aligned_cols=48  Identities=35%  Similarity=0.626  Sum_probs=44.6

Q ss_pred             HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhc
Q psy489           51 EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHYQ   98 (99)
Q Consensus        51 erL~rts~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~t   98 (99)
                      ++|++|+++|.+|+++|.|||+||.+|+.+|+.|||+|.+++++|+++
T Consensus         2 ~rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~   49 (65)
T 1gl2_C            2 SHMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNT   49 (65)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhH
Confidence            689999999999999999999999999999999999999999999864

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=99.27  E-value=1.6e-11  Score=80.07  Aligned_cols=52  Identities=13%  Similarity=0.138  Sum_probs=48.6

Q ss_pred             HHhhhHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Q psy489           46 LLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHY   97 (99)
Q Consensus        46 LL~~terL~rts~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~   97 (99)
                      ...+++++++|++++.++.++|.|||+||..|+.+|+.|||+|.|++..|++
T Consensus        11 ~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~   62 (79)
T 1n7s_C           11 QRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNH   62 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence            3456699999999999999999999999999999999999999999999876

>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1

Probab=98.79  E-value=8.6e-09  Score=62.66  Aligned_cols=37  Identities=24%  Similarity=0.338  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Q psy489           61 ETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHY   97 (99)
Q Consensus        61 ~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~   97 (99)
                      .++.++|.|||+||..++.+|+.|||+|.|++..|++
T Consensus         3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~   39 (54)
T 1nhl_A            3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQ   39 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHH
Confidence            5789999999999999999999999999999999875

>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=98.10  E-value=8.4e-06  Score=52.07  Aligned_cols=46  Identities=17%  Similarity=0.219  Sum_probs=41.9

Q ss_pred             HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Q psy489           52 EIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHY   97 (99)
Q Consensus        52 rL~rts~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~   97 (99)
                      .-+.|.++..++.++|.|+|++|..++..|+.|.|+|.++...|+.
T Consensus         6 ~~~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~   51 (70)
T 3b5n_C            6 TKQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDL   51 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4467788889999999999999999999999999999999988864

>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=97.99  E-value=2.3e-05  Score=51.54  Aligned_cols=48  Identities=17%  Similarity=0.178  Sum_probs=44.2

Q ss_pred             hHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Q psy489           50 SEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHY   97 (99)
Q Consensus        50 terL~rts~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~   97 (99)
                      ...-+.|.++..++.++|.|++++|..++..|+.|+|+|.|+...|..
T Consensus        19 ~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~   66 (83)
T 1l4a_C           19 NQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQ   66 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466788899999999999999999999999999999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00