Psyllid ID: psy4919

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
MRESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTGLGLPCSDSVDIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHcccEEEEEEcccccEEEEEccccccccccHHHHHHHHcccccccccccEEcccccEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHHHHHHHHHHHccEEEEEEccccEEEEEEccccHcHHHcHHHHHHHHccccccccccEEEcccccEcccccc
Coil and Loop (DISEMBL)
mresqertgntstdgtykpsfltdQELKHLILEAADGFLFVVACDTGRvvvtglglpcsdsvdIEKVREQLstqepqnagrildlktgtvkkeghq
Flexible Loop (DISEMBL)
mresqertgntstdgtykpsFLTDQELKHLILEAADGFLFVVACDTGRVVVTGLGLPCSDSVDIEKVREqlstqepqnagrildlktgtvkkeghq
Low Complexity Region (SEG)
MRESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTGLGLPCSDSVDIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ
Disordered region (IsUnstruct)
********************FLTDQELKHLILEAADGFLFVVACDTGRVVVTGLGLPCSDSVDI********************************
Disordered Region (DISOPRED)
*****************KPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTGLGLPCSDSVDIEKVREQ**************************
Disordered Region (DISEMBL)
*************DGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTGLGLPCSDSVDIEKVREQLSTQEPQNAGRILDLKTG********
Disordered Region (DISPRO)
***************TYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTGLGLPCSDSVDIEKVREQLST*******R******GTVK*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTGLGLPCSDSVDIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	96	2.2.26 [Sep-21-2011]
O15945	642	Aryl hydrocarbon receptor	yes	N/A	0.864	0.129	0.651	3e-31
Q9BE97	790	Aryl hydrocarbon receptor	yes	N/A	0.927	0.112	0.641	9e-29
P41739	800	Aryl hydrocarbon receptor	yes	N/A	0.927	0.111	0.632	2e-28
O02748	790	Aryl hydrocarbon receptor	yes	N/A	0.927	0.112	0.632	2e-28
P27540	789	Aryl hydrocarbon receptor	yes	N/A	0.927	0.112	0.632	2e-28
P53762	791	Aryl hydrocarbon receptor	yes	N/A	0.927	0.112	0.622	3e-28
Q9DG12	737	Aryl hydrocarbon receptor	no	N/A	0.979	0.127	0.603	3e-27
P79832	723	Aryl hydrocarbon receptor	N/A	N/A	0.979	0.130	0.594	4e-27
Q61324	712	Aryl hydrocarbon receptor	no	N/A	0.979	0.132	0.594	2e-26
Q78E60	712	Aryl hydrocarbon receptor	no	N/A	0.979	0.132	0.594	2e-26

>sp|O15945|ARNT_DROME Aryl hydrocarbon receptor nuclear translocator homolog OS=Drosophila melanogaster GN=tgo PE=1 SV=3

 Score =  133 bits (334), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 73/112 (65%), Positives = 79/112 (70%), Gaps = 29/112 (25%)

Query: 8   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTGLGLPCSDSV----- 62
           TGNTS+DGTYKPSFLTDQELKHLILEAADGFLFVV+CD+GRV+        SDSV     
Sbjct: 69  TGNTSSDGTYKPSFLTDQELKHLILEAADGFLFVVSCDSGRVIYV------SDSVTPVLN 122

Query: 63  ------------------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
                             D EK+REQLSTQE QNAGRILDLK+GTVKKEGHQ
Sbjct: 123 YTQSDWYGTSLYEHIHPDDREKIREQLSTQESQNAGRILDLKSGTVKKEGHQ 174

Heterodimers of tgo/trh are involved in the control of breathless expression. Plays a role in the cellular or tissue response to oxygen deprivation.
Drosophila melanogaster (taxid: 7227)

>sp|Q9BE97|ARNT_BOVIN Aryl hydrocarbon receptor nuclear translocator OS=Bos taurus GN=ARNT PE=2 SV=1

 Score =  125 bits (313), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 68/106 (64%), Positives = 75/106 (70%), Gaps = 17/106 (16%)

Query: 8   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSDS 61
           TGNTSTDGTYKPSFLTDQELKHLILEAADGFLF+V+C+TGRVV         L  P S+ 
Sbjct: 145 TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEW 204

Query: 62  V-----------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
                       D++K+REQLST E    GRILDLKTGTVKKEG Q
Sbjct: 205 FGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQ 250

Required for activity of the Ah (dioxin) receptor. This protein is required for the ligand-binding subunit to translocate from the cytosol to the nucleus after ligand binding. The complex then initiates transcription of genes involved in the activation of PAH procarcinogens (By similarity). The heterodimer with HIF1A or EPAS1/HIF2A functions as a transcriptional regulator of the adaptive response to hypoxia.

Bos taurus (taxid: 9913)

>sp|P41739|ARNT_RAT Aryl hydrocarbon receptor nuclear translocator OS=Rattus norvegicus GN=Arnt PE=1 SV=2

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/106 (63%), Positives = 75/106 (70%), Gaps = 17/106 (16%)

Query: 8   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSDS 61
           TGNTSTDG+YKPSFLTDQELKHLILEAADGFLF+V+C+TGRVV         L  P S+ 
Sbjct: 145 TGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEW 204

Query: 62  V-----------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
                       D++K+REQLST E    GRILDLKTGTVKKEG Q
Sbjct: 205 FGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQ 250

Required for activity of the Ah (dioxin) receptor. This protein is required for the ligand-binding subunit to translocate from the cytosol to the nucleus after ligand binding. The complex then initiates transcription of genes involved in the activation of PAH procarcinogens. The heterodimer with HIF1A or EPAS1/HIF2A functions as a transcriptional regulator of the adaptive response to hypoxia.

Rattus norvegicus (taxid: 10116)

>sp|O02748|ARNT_RABIT Aryl hydrocarbon receptor nuclear translocator OS=Oryctolagus cuniculus GN=ARNT PE=2 SV=1

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/106 (63%), Positives = 75/106 (70%), Gaps = 17/106 (16%)

Query: 8   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSDS 61
           TGNTSTDG+YKPSFLTDQELKHLILEAADGFLF+V+C+TGRVV         L  P S+ 
Sbjct: 145 TGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEW 204

Query: 62  V-----------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
                       D++K+REQLST E    GRILDLKTGTVKKEG Q
Sbjct: 205 FGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQ 250

Required for activity of the Ah (dioxin) receptor. This protein is required for the ligand-binding subunit to translocate from the cytosol to the nucleus after ligand binding. The complex then initiates transcription of genes involved in the activation of PAH procarcinogens. The heterodimer with HIF1A or EPAS1/HIF2A functions as a transcriptional regulator of the adaptive response to hypoxia.

Oryctolagus cuniculus (taxid: 9986)

>sp|P27540|ARNT_HUMAN Aryl hydrocarbon receptor nuclear translocator OS=Homo sapiens GN=ARNT PE=1 SV=1

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/106 (63%), Positives = 75/106 (70%), Gaps = 17/106 (16%)

Query: 8   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSDS 61
           TGNTSTDG+YKPSFLTDQELKHLILEAADGFLF+V+C+TGRVV         L  P S+ 
Sbjct: 145 TGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEW 204

Query: 62  V-----------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
                       D++K+REQLST E    GRILDLKTGTVKKEG Q
Sbjct: 205 FGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQ 250

Required for activity of the Ah (dioxin) receptor. This protein is required for the ligand-binding subunit to translocate from the cytosol to the nucleus after ligand binding. The complex then initiates transcription of genes involved in the activation of PAH procarcinogens. The heterodimer with HIF1A or EPAS1/HIF2A functions as a transcriptional regulator of the adaptive response to hypoxia.

Homo sapiens (taxid: 9606)

>sp|P53762|ARNT_MOUSE Aryl hydrocarbon receptor nuclear translocator OS=Mus musculus GN=Arnt PE=1 SV=3

 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 75/106 (70%), Gaps = 17/106 (16%)

Query: 8   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSDS 61
           TGNTSTDG+YKPSFLTDQELKHLILEAADGFLF+V+C+TGRVV         L  P S+ 
Sbjct: 145 TGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEW 204

Query: 62  V-----------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
                       D++K+REQLST E    GR+LDLKTGTVKKEG Q
Sbjct: 205 FGSTLYDQVHPDDVDKLREQLSTSENALTGRVLDLKTGTVKKEGQQ 250

Required for activity of the Ah (dioxin) receptor. This protein is required for the ligand-binding subunit to translocate from the cytosol to the nucleus after ligand binding. The complex then initiates transcription of genes involved in the activation of PAH procarcinogens. The heterodimer with HIF1A or EPAS1/HIF2A functions as a transcriptional regulator of the adaptive response to hypoxia.

Mus musculus (taxid: 10090)

>sp|Q9DG12|ARNT2_DANRE Aryl hydrocarbon receptor nuclear translocator 2 OS=Danio rerio GN=arnt2 PE=1 SV=2

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/111 (60%), Positives = 75/111 (67%), Gaps = 17/111 (15%)

Query: 3   ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGL 56
           +S   TGNTSTDG YKPSFLT+QELKHLILEAADGFLFVVA +TGRV+         L  
Sbjct: 129 KSMRGTGNTSTDGAYKPSFLTEQELKHLILEAADGFLFVVAAETGRVIYVSDSVTPVLNH 188

Query: 57  PCSDSV-----------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
           P S+             D++K+REQLST E    GRILDLKTGTVKKEG Q
Sbjct: 189 PQSEWFGSTLFEQVHPDDVDKLREQLSTSENSMTGRILDLKTGTVKKEGQQ 239

Specifically recognizes the xenobiotic response element (XRE). Isoform 1 acts as a transcriptional activator. Isoform 3 acts as a transcriptional repressor.

Danio rerio (taxid: 7955)

>sp|P79832|ARNT_ONCMY Aryl hydrocarbon receptor nuclear translocator OS=Oncorhynchus mykiss GN=arnt PE=1 SV=1

 Score =  120 bits (300), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 66/111 (59%), Positives = 76/111 (68%), Gaps = 17/111 (15%)

Query: 3   ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG--------- 53
           +S   +GNT+ DGTYKPSFLTDQELKHLILEAADGFLFVV+C++GRVV            
Sbjct: 116 KSLRGSGNTAADGTYKPSFLTDQELKHLILEAADGFLFVVSCESGRVVYVSDSLTPVLNQ 175

Query: 54  -----LGLPCSDSV---DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
                LG    D +   D +K+REQLST E  N GR+LDLKTGTVKKEG Q
Sbjct: 176 SQSDWLGSSLYDQLHPDDGDKLREQLSTAESNNTGRMLDLKTGTVKKEGQQ 226

Isoform 1 specifically recognizes the xenobiotic response element (XRE), functions positively in AHR-mediated signaling and activates transcription. Isoform 2 has reduced affinity for the XRE and functions negatively in AHR-mediated signaling by disrupting the binding of dimers formed by isoform 1 and AHR to the XRE.

Oncorhynchus mykiss (taxid: 8022)

>sp|Q61324|ARNT2_MOUSE Aryl hydrocarbon receptor nuclear translocator 2 OS=Mus musculus GN=Arnt2 PE=1 SV=2

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 73/111 (65%), Gaps = 17/111 (15%)

Query: 3   ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGL 56
           +S   TGN STDG YKPSFLT+QELKHLILEAADGFLFVVA +TGRV+         L  
Sbjct: 114 KSMRGTGNKSTDGAYKPSFLTEQELKHLILEAADGFLFVVAAETGRVIYVSDSVTPVLNQ 173

Query: 57  PCSDSV-----------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
           P S+             D+EK+REQL T E    GRILDLKTGTVKKEG Q
Sbjct: 174 PQSEWFGSTLYEQVHPDDVEKLREQLCTSENSMTGRILDLKTGTVKKEGQQ 224

Specifically recognizes the xenobiotic response element (XRE).

Mus musculus (taxid: 10090)

>sp|Q78E60|ARNT2_RAT Aryl hydrocarbon receptor nuclear translocator 2 OS=Rattus norvegicus GN=Arnt2 PE=2 SV=1

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 73/111 (65%), Gaps = 17/111 (15%)

Query: 3   ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGL 56
           +S   TGN STDG YKPSFLT+QELKHLILEAADGFLFVVA +TGRV+         L  
Sbjct: 114 KSMRGTGNKSTDGAYKPSFLTEQELKHLILEAADGFLFVVAAETGRVIYVSDSVTPVLNQ 173

Query: 57  PCSDSV-----------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
           P S+             D+EK+REQL T E    GRILDLKTGTVKKEG Q
Sbjct: 174 PQSEWFGSTLYEQVHPDDVEKLREQLCTSENSMTGRILDLKTGTVKKEGQQ 224

Specifically recognizes the xenobiotic response element (XRE).

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
270014664	679	hypothetical protein TcasGA2_TC004710 [T	0.906	0.128	0.804	5e-33
189233619	661	PREDICTED: similar to arylhydrocarbon re	0.927	0.134	0.707	2e-32
262477852	313	tango [Tipula abdominalis]	0.864	0.265	0.687	2e-32
242021051	671	conserved hypothetical protein [Pediculu	0.927	0.132	0.698	2e-32
389614612	304	tango protein [Papilio polytes]	0.864	0.273	0.669	3e-32
357628246	641	putative arylhydrocarbon receptor nuclea	0.864	0.129	0.669	6e-32
262477848	313	tango [Chironomus tepperi]	0.864	0.265	0.669	7e-32
374279664	263	hypoxia-inducible factor beta, partial [	0.927	0.338	0.688	1e-31
321479053	669	putative aryl hydrocarbon receptor nucle	0.864	0.124	0.669	2e-31
328704455	652	PREDICTED: aryl hydrocarbon receptor nuc	0.979	0.144	0.675	3e-31

>gi|270014664|gb|EFA11112.1| hypothetical protein TcasGA2_TC004710 [Tribolium castaneum]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 74/92 (80%), Positives = 78/92 (84%), Gaps = 5/92 (5%)

Query: 8   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTGLGLPCSDSV---DI 64
           TGNTS DGTYKPSFLTDQELKHLILEAADGFLFVV+CDTGR    G  L   D++   D+
Sbjct: 167 TGNTSADGTYKPSFLTDQELKHLILEAADGFLFVVSCDTGRSDWYGSCL--YDNIHPEDV 224

Query: 65  EKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
           EKVREQLSTQEPQN GRILDLKTGTVKKEGHQ
Sbjct: 225 EKVREQLSTQEPQNTGRILDLKTGTVKKEGHQ 256

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189233619|ref|XP_970422.2| PREDICTED: similar to arylhydrocarbon receptor nuclear translocator homolog b [Tribolium castaneum]

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/106 (70%), Positives = 78/106 (73%), Gaps = 17/106 (16%)

Query: 8   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSDS 61
           TGNTS DGTYKPSFLTDQELKHLILEAADGFLFVV+CDTGRV+         L    SD 
Sbjct: 133 TGNTSADGTYKPSFLTDQELKHLILEAADGFLFVVSCDTGRVIYVSDSVAPVLNYSQSDW 192

Query: 62  V-----------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
                       D+EKVREQLSTQEPQN GRILDLKTGTVKKEGHQ
Sbjct: 193 YGSCLYDNIHPEDVEKVREQLSTQEPQNTGRILDLKTGTVKKEGHQ 238

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|262477852|gb|ACY68224.1| tango [Tipula abdominalis]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/112 (68%), Positives = 80/112 (71%), Gaps = 29/112 (25%)

Query: 8   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTGLGLPCSDSV----- 62
           TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVV+CDTGR++        SDSV     
Sbjct: 3   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVSCDTGRIIYV------SDSVTPVLN 56

Query: 63  ------------------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
                             DIEKVREQLSTQEPQN GRILDLKTGTVKKEGHQ
Sbjct: 57  HSQNDWYGSSMYENIHPDDIEKVREQLSTQEPQNTGRILDLKTGTVKKEGHQ 108

Source: Tipula abdominalis

Species: Tipula abdominalis

Genus: Tipula

Family: Tipulidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021051|ref|XP_002430960.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212516180|gb|EEB18222.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/106 (69%), Positives = 79/106 (74%), Gaps = 17/106 (16%)

Query: 8   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG-------------- 53
           TGNTS+DGTYKPSFLTDQELKHLILEAADGFLFVV CDTGR++                 
Sbjct: 127 TGNTSSDGTYKPSFLTDQELKHLILEAADGFLFVVTCDTGRIIYVSDSVTPVLNQSQNDW 186

Query: 54  LGLPCSDSV---DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
            G    D+V   D+EKVREQLSTQEPQN GRILDLKTGTVKKEGHQ
Sbjct: 187 FGSCIYDNVHSEDVEKVREQLSTQEPQNTGRILDLKTGTVKKEGHQ 232

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389614612|dbj|BAM20342.1| tango protein [Papilio polytes]

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 75/112 (66%), Positives = 80/112 (71%), Gaps = 29/112 (25%)

Query: 8   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTGLGLPCSDSV----- 62
           TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVV+CDTGR++        SDS+     
Sbjct: 108 TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVSCDTGRIIYV------SDSIAPVLN 161

Query: 63  ------------------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
                             D+EKVREQLSTQEPQN GRILDLKTGTVKKEGHQ
Sbjct: 162 YSQGEWYSSCLFDQVHPDDVEKVREQLSTQEPQNTGRILDLKTGTVKKEGHQ 213

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357628246|gb|EHJ77636.1| putative arylhydrocarbon receptor nuclear translocator-like protein b [Danaus plexippus]

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 75/112 (66%), Positives = 80/112 (71%), Gaps = 29/112 (25%)

Query: 8   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTGLGLPCSDSV----- 62
           TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVV+CDTGR++        SDS+     
Sbjct: 108 TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVSCDTGRIIYV------SDSIAPVLN 161

Query: 63  ------------------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
                             D+EKVREQLSTQEPQN GRILDLKTGTVKKEGHQ
Sbjct: 162 YSQGEWYSSCFYDQVHPDDLEKVREQLSTQEPQNTGRILDLKTGTVKKEGHQ 213

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|262477848|gb|ACY68222.1| tango [Chironomus tepperi]

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 75/112 (66%), Positives = 81/112 (72%), Gaps = 29/112 (25%)

Query: 8   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTGLGLPCSDSV----- 62
           TGNT+TDG+YKPSFLTDQELKHLILEAADGFLFVV+CDTGR++        SDSV     
Sbjct: 3   TGNTNTDGSYKPSFLTDQELKHLILEAADGFLFVVSCDTGRIIYV------SDSVTPVLN 56

Query: 63  ------------------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
                             DIEKVREQLSTQEPQN+GRILDLKTGTVKKEGHQ
Sbjct: 57  QSQNDWYGSSLFELVHGDDIEKVREQLSTQEPQNSGRILDLKTGTVKKEGHQ 108

Source: Chironomus tepperi

Species: Chironomus tepperi

Genus: Chironomus

Family: Chironomidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|374279664|gb|AEZ04013.1| hypoxia-inducible factor beta, partial [Callinectes sapidus]

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/106 (68%), Positives = 78/106 (73%), Gaps = 17/106 (16%)

Query: 8   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSDS 61
           TGNT+ DGTYKPSFLTDQELKHLILEAADGFLFVVACDTGR++         L  P SD 
Sbjct: 64  TGNTNADGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRIIYASDSVTPVLNQPQSDW 123

Query: 62  V-----------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
                       D++KVREQLSTQEP N GRILDLKTGTVKKEGHQ
Sbjct: 124 FGSSVYDHVHPEDVDKVREQLSTQEPANQGRILDLKTGTVKKEGHQ 169

Source: Callinectes sapidus

Species: Callinectes sapidus

Genus: Callinectes

Family: Portunidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321479053|gb|EFX90009.1| putative aryl hydrocarbon receptor nuclear translocator [Daphnia pulex]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/112 (66%), Positives = 78/112 (69%), Gaps = 29/112 (25%)

Query: 8   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTGLGLPCSDSV----- 62
           TGNTS DGTYKPSFLTDQELKHLILEAADGFLFV ACDTGR++        SDSV     
Sbjct: 106 TGNTSADGTYKPSFLTDQELKHLILEAADGFLFVSACDTGRLIYV------SDSVTPVLH 159

Query: 63  ------------------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
                             D+EKVREQLSTQEP NAGRILDLKTGTVKKEGHQ
Sbjct: 160 QGQSDWFGSCLYDHLHPDDVEKVREQLSTQEPPNAGRILDLKTGTVKKEGHQ 211

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328704455|ref|XP_003242495.1| PREDICTED: aryl hydrocarbon receptor nuclear translocator homolog isoform 2 [Acyrthosiphon pisum]

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 75/111 (67%), Positives = 81/111 (72%), Gaps = 17/111 (15%)

Query: 3   ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG--------- 53
           +S   TGNT+ DGTYKPSFLTDQELKHLILEAADGFLFVV CDTGRV+            
Sbjct: 102 KSLRGTGNTNNDGTYKPSFLTDQELKHLILEAADGFLFVVTCDTGRVIYVSDSVAPVLNY 161

Query: 54  -----LGLPCSDSV---DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
                LG    D +   D+EKVREQLSTQEPQN+GRILDLKTGTVKKEGHQ
Sbjct: 162 SQNDWLGTSMFDHLHPEDVEKVREQLSTQEPQNSGRILDLKTGTVKKEGHQ 212

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
FB|FBgn0264075	642	tgo "tango" [Drosophila melano	0.447	0.066	0.906	1.2e-29
UNIPROTKB|K7GQY6	347	ARNT "Uncharacterized protein"	0.5	0.138	0.854	7.5e-29
UNIPROTKB|A6NGV6	416	ARNT "Aryl hydrocarbon recepto	0.5	0.115	0.833	1.1e-27
UNIPROTKB|F6V057	781	ARNT "Uncharacterized protein"	0.5	0.061	0.854	5.8e-27
UNIPROTKB|F1SS94	781	ARNT "Uncharacterized protein"	0.5	0.061	0.854	5.8e-27
UNIPROTKB|F1MYI1	782	ARNT "Aryl hydrocarbon recepto	0.5	0.061	0.854	5.8e-27
UNIPROTKB|Q9BE97	790	ARNT "Aryl hydrocarbon recepto	0.5	0.060	0.854	6e-27
UNIPROTKB|K7GNG1	790	ARNT "Uncharacterized protein"	0.5	0.060	0.854	6e-27
UNIPROTKB|E2QT96	791	ARNT "Uncharacterized protein"	0.5	0.060	0.854	6e-27
UNIPROTKB|J9P204	791	ARNT "Uncharacterized protein"	0.5	0.060	0.854	6e-27

FB|FBgn0264075 tgo "tango" [Drosophila melanogaster (taxid:7227)]

 Score = 211 (79.3 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
 Identities = 39/43 (90%), Positives = 43/43 (100%)

Query:     8 TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVV 50
             TGNTS+DGTYKPSFLTDQELKHLILEAADGFLFVV+CD+GRV+
Sbjct:    69 TGNTSSDGTYKPSFLTDQELKHLILEAADGFLFVVSCDSGRVI 111

GO:0007422 "peripheral nervous system development" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=TAS;IPI

GO:0005634 "nucleus" evidence=IC;ISS;IDA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=ISS

GO:0007417 "central nervous system development" evidence=IMP

GO:0007424 "open tracheal system development" evidence=TAS

GO:0007425 "epithelial cell fate determination, open tracheal system" evidence=NAS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA;TAS;IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007420 "brain development" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0007517 "muscle organ development" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0071456 "cellular response to hypoxia" evidence=IDA

GO:0032869 "cellular response to insulin stimulus" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0008347 "glial cell migration" evidence=IMP

UNIPROTKB|K7GQY6 ARNT "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 216 (81.1 bits), Expect = 7.5e-29, Sum P(2) = 7.5e-29
 Identities = 41/48 (85%), Positives = 45/48 (93%)

Query:     3 ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVV 50
             +S   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLF+V+C+TGRVV
Sbjct:   140 KSLRGTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFIVSCETGRVV 187

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|A6NGV6 ARNT "Aryl hydrocarbon receptor nuclear translocator" [Homo sapiens (taxid:9606)]

 Score = 212 (79.7 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
 Identities = 40/48 (83%), Positives = 45/48 (93%)

Query:     3 ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVV 50
             +S   TGNTSTDG+YKPSFLTDQELKHLILEAADGFLF+V+C+TGRVV
Sbjct:   140 KSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVV 187

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|F6V057 ARNT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 216 (81.1 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
 Identities = 41/48 (85%), Positives = 45/48 (93%)

Query:     3 ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVV 50
             +S   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLF+V+C+TGRVV
Sbjct:   131 KSLRGTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFIVSCETGRVV 178

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|F1SS94 ARNT "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 216 (81.1 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
 Identities = 41/48 (85%), Positives = 45/48 (93%)

Query:     3 ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVV 50
             +S   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLF+V+C+TGRVV
Sbjct:   131 KSLRGTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFIVSCETGRVV 178

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|F1MYI1 ARNT "Aryl hydrocarbon receptor nuclear translocator" [Bos taurus (taxid:9913)]

 Score = 216 (81.1 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
 Identities = 41/48 (85%), Positives = 45/48 (93%)

Query:     3 ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVV 50
             +S   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLF+V+C+TGRVV
Sbjct:   132 KSLRGTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFIVSCETGRVV 179

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0046886 "positive regulation of hormone biosynthetic process" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0043619 "regulation of transcription from RNA polymerase II promoter in response to oxidative stress" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0033235 "positive regulation of protein sumoylation" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0017162 "aryl hydrocarbon receptor binding" evidence=IEA

GO:0010575 "positive regulation vascular endothelial growth factor production" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004874 "aryl hydrocarbon receptor activity" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0001892 "embryonic placenta development" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

UNIPROTKB|Q9BE97 ARNT "Aryl hydrocarbon receptor nuclear translocator" [Bos taurus (taxid:9913)]

 Score = 216 (81.1 bits), Expect = 6.0e-27, Sum P(2) = 6.0e-27
 Identities = 41/48 (85%), Positives = 45/48 (93%)

Query:     3 ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVV 50
             +S   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLF+V+C+TGRVV
Sbjct:   140 KSLRGTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFIVSCETGRVV 187

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|K7GNG1 ARNT "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 216 (81.1 bits), Expect = 6.0e-27, Sum P(2) = 6.0e-27
 Identities = 41/48 (85%), Positives = 45/48 (93%)

Query:     3 ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVV 50
             +S   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLF+V+C+TGRVV
Sbjct:   140 KSLRGTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFIVSCETGRVV 187

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|E2QT96 ARNT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 216 (81.1 bits), Expect = 6.0e-27, Sum P(2) = 6.0e-27
 Identities = 41/48 (85%), Positives = 45/48 (93%)

Query:     3 ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVV 50
             +S   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLF+V+C+TGRVV
Sbjct:   140 KSLRGTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFIVSCETGRVV 187

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|J9P204 ARNT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 216 (81.1 bits), Expect = 6.0e-27, Sum P(2) = 6.0e-27
 Identities = 41/48 (85%), Positives = 45/48 (93%)

Query:     3 ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVV 50
             +S   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLF+V+C+TGRVV
Sbjct:   140 KSLRGTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFIVSCETGRVV 187

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P53762	ARNT_MOUSE	No assigned EC number	0.6226	0.9270	0.1125	yes	N/A
O15945	ARNT_DROME	No assigned EC number	0.6517	0.8645	0.1292	yes	N/A
Q9BE97	ARNT_BOVIN	No assigned EC number	0.6415	0.9270	0.1126	yes	N/A
O02748	ARNT_RABIT	No assigned EC number	0.6320	0.9270	0.1126	yes	N/A
P27540	ARNT_HUMAN	No assigned EC number	0.6320	0.9270	0.1128	yes	N/A
P41739	ARNT_RAT	No assigned EC number	0.6320	0.9270	0.1112	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	96
KOG3561|consensus	803		99.89
KOG3558|consensus	768		99.6
KOG3560|consensus	712		98.83
KOG3559|consensus	598		98.69
PF00989	113	PAS: PAS fold; InterPro: IPR013767 PAS domains are	96.17
PF08446	110	PAS_2: PAS fold; InterPro: IPR013654 The PAS fold	90.25
PF13426	104	PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_	83.17
PF14598	111	PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W	82.86

>KOG3561|consensus

Probab=99.89  E-value=2.6e-24  Score=187.42  Aligned_cols=86  Identities=53%  Similarity=0.778  Sum_probs=80.3

Q ss_pred             cccccC--CCCCCCCCCCCCCCChHHHHHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC-----------chh
Q psy4919           3 ESQERT--GNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVD   63 (96)
Q Consensus         3 k~~rg~--~~~~~~~~~kPsfls~~el~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D   63 (96)
                      |.+||.  .+++.+.+|||+||+++||++|||||||||||||+| +|+|||||      |||+|+|           |+|
T Consensus        70 r~~k~~~~~~~~~~~d~KpSflS~~eL~~LmLeAlDGF~fvV~c-dG~IvyVSeSVT~~L~y~QsDL~~qSly~ilhp~d  148 (803)
T KOG3561|consen   70 RLIKEQESENSSIDQDYKPSFLSNDELTHLILEALDGFLFVVNC-DGRIVYVSESVTSVLGYLQSDLMGQSLYDILHPLD  148 (803)
T ss_pred             HHHhhhhcccccccccccccccchHHHHHHHHHHhcCeEEEEec-CceEEEEecchHHhhCcCHHHHhcchHHHhcCccc
Confidence            456764  677889999999999999999999999999999999 69999999      9999999           999


Q ss_pred             HHHHHHHhC--CCCCCCcccccccccce
Q psy4919          64 IEKVREQLS--TQEPQNAGRILDLKTGT   89 (96)
Q Consensus        64 ~~e~~eqL~--~~~~~~~~r~~d~kt~~   89 (96)
                      .+++|+||+  ..+.+...|+++.|+++
T Consensus       149 ~~~~~~ql~~r~~e~~f~~r~l~~~~~~  176 (803)
T KOG3561|consen  149 NDKPREQLSPRSNEHTFNCRLLDGKTGP  176 (803)
T ss_pred             cCcccccccccccccccchhhhccCCCC
Confidence            999999999  77789999999999997

>KOG3558|consensus

Probab=99.60  E-value=1e-15  Score=132.66  Aligned_cols=69  Identities=32%  Similarity=0.485  Sum_probs=63.1

Q ss_pred             ChHHHHHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHhCCCC----------
Q psy4919          23 TDQELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQLSTQE----------   75 (96)
Q Consensus        23 s~~el~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL~~~~----------   75 (96)
                      .++.++.+||||||||+|||+. +|+++|||      ||++|.|           ||||+||+|||....          
T Consensus       116 ~e~~l~~~iLqsLDGFVm~l~~-dG~~lYiSEtVS~yLGLSQvELTG~SvFDfiHP~DheE~~eqL~l~~~~p~~~es~~  194 (768)
T KOG3558|consen  116 LEQHLGDHILQSLDGFVMALTQ-DGDFLYISETVSIYLGLSQVELTGSSVFDFIHPCDHEEIAEQLGLRLTTPEVKESTD  194 (768)
T ss_pred             hhhhhhhhHHhhccceEEEEcc-CCCEEEEechhHhhhCccceeeecchhhhccCccCHHHHHHHhccccCCCccccccc
Confidence            3667999999999999999998 99999999      9999999           999999999987643          


Q ss_pred             --------------CCCcccccccccceeec
Q psy4919          76 --------------PQNAGRILDLKTGTVKK   92 (96)
Q Consensus        76 --------------~~~~~r~~d~kt~~~~~   92 (96)
                                    +++|||++|+|++.||.
T Consensus       195 ~~teRsFflRMKsTLT~RGRtlnlKSa~yKv  225 (768)
T KOG3558|consen  195 TSTERSFFLRMKSTLTKRGRTLNLKSAGYKV  225 (768)
T ss_pred             CccceeEEEEeeeeeccCCceeeeeccceeE
Confidence                          68999999999998874

>KOG3560|consensus

Probab=98.83  E-value=3.7e-09  Score=91.04  Aligned_cols=47  Identities=32%  Similarity=0.496  Sum_probs=44.2

Q ss_pred             HHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHhCCCC
Q psy4919          28 KHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQLSTQE   75 (96)
Q Consensus        28 ~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL~~~~   75 (96)
                      +.++||||+||++||++ +|.|+|+|      ||+.|+|           .+|+++|+.||.+.-
T Consensus       113 ge~lLqsLnGF~lVvt~-eg~ifyAS~tIedYLGFhQSDV~HQsVYdlIHseDR~dfqrQLhwa~  176 (712)
T KOG3560|consen  113 GELLLQSLNGFALVVTA-EGEIFYASATIEDYLGFHQSDVMHQSVYDLIHSEDRQDFQRQLHWAM  176 (712)
T ss_pred             hHHHHHhcCCeEEEEec-CceEEEehhhHHhhhcccccchhhhhHHHHhhhhhHHHHHHHHhhcc
Confidence            46899999999999999 99999999      9999999           999999999999853

>KOG3559|consensus

Probab=98.69  E-value=1.7e-08  Score=85.22  Aligned_cols=55  Identities=31%  Similarity=0.506  Sum_probs=50.6

Q ss_pred             CCCChHHHHHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHhCCCC
Q psy4919          20 SFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQLSTQE   75 (96)
Q Consensus        20 sfls~~el~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL~~~~   75 (96)
                      -.=++.|++..+|+.||||+|||.. +|+|+|+|      ||++|.+           |-||+++-.+|.-.+
T Consensus        73 ~~g~~~elgshlLqtLDGF~fvva~-dGkimYISETaSvhLGLSQVElTGNsi~eYIH~~D~demna~L~~h~  144 (598)
T KOG3559|consen   73 LDGVDKELGSHLLQTLDGFIFVVAP-DGKIMYISETASVHLGLSQVELTGNSIYEYIHPQDHDEMNAVLTAHQ  144 (598)
T ss_pred             ccchHHHHHHhHHHhhcceEEEEeC-CCCEEEEecceeeeecceeeEeecchhhhhhcccchHHHHHHHhhhh
Confidence            3445899999999999999999998 99999999      9999999           999999999998776

>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []

Probab=96.17  E-value=0.0084  Score=37.03  Aligned_cols=34  Identities=29%  Similarity=0.447  Sum_probs=27.5

Q ss_pred             HHHHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919          26 ELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD   60 (96)
Q Consensus        26 el~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d   60 (96)
                      |.-.-+++++.-.+++++. +|+|+|++      +||.+.+
T Consensus         1 e~~~~i~~~~~~~i~~~d~-~g~I~~~N~a~~~l~g~~~~~   40 (113)
T PF00989_consen    1 ERYRAILENSPDGIFVIDE-DGRILYVNQAAEELLGYSREE   40 (113)
T ss_dssp             HHHHHHHHCSSSEEEEEET-TSBEEEECHHHHHHHSS-HHH
T ss_pred             CHHHHHHhcCCceEEEEeC-cCeEEEECHHHHHHHccCHHH
Confidence            3445678889999999996 99999999      8888766

PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....

>PF08446 PAS_2: PAS fold; InterPro: IPR013654 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []

Probab=90.25  E-value=0.39  Score=32.46  Aligned_cols=41  Identities=29%  Similarity=0.500  Sum_probs=32.0

Q ss_pred             cccEEEEecCCCcEEEEc------cCCC---CCC-----------chhHHHHHHHhCCCCC
Q psy4919          36 DGFLFVVACDTGRVVVTG------LGLP---CSD-----------SVDIEKVREQLSTQEP   76 (96)
Q Consensus        36 dGFl~Vvs~~~G~IlyvS------Lg~~---q~d-----------p~D~~e~~eqL~~~~~   76 (96)
                      -|||+|+..++++|+++|      ||..   ..+           +.....+++.+.....
T Consensus        15 hG~LLa~d~~~~~I~~~S~N~~~~lg~~~~~~~~llG~~l~~ll~~~~~~~l~~~~~~~~~   75 (110)
T PF08446_consen   15 HGALLALDPDDLRIVQASENIAELLGIPPELPEELLGRPLSELLGAESAERLREALQSESL   75 (110)
T ss_dssp             TSEEEEEETTTTBEEEEETTHHHHHSS----HHHHTTCBHHHHSCCCCHHHHHHHCTCCCC
T ss_pred             CEEEEEEECCCCEEEEEcCCHHHHhCCccccchhhcccCHHHHhCHHHHHHHHHhhhccCc
Confidence            499999987789999999      8988   444           5667788888877554

The PAS fold appears in archaea, eubacteria and eukarya. ; GO: 0008020 G-protein coupled photoreceptor activity, 0006355 regulation of transcription, DNA-dependent, 0009584 detection of visible light, 0018298 protein-chromophore linkage; PDB: 3S7O_A 2O9B_A 3S7P_A 1ZTU_A 3S7N_A 3S7Q_A 2O9C_A 2OOL_A 3C2W_G 3NHQ_B ....

>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A

Probab=83.17  E-value=0.71  Score=27.69  Aligned_cols=21  Identities=19%  Similarity=0.580  Sum_probs=14.9

Q ss_pred             EEEEecCCCcEEEEc------cCCCCCC
Q psy4919          39 LFVVACDTGRVVVTG------LGLPCSD   60 (96)
Q Consensus        39 l~Vvs~~~G~IlyvS------Lg~~q~d   60 (96)
                      ++++.. +|.|+|++      +||++.+
T Consensus         4 i~i~d~-~g~i~~~N~~~~~~~g~~~~~   30 (104)
T PF13426_consen    4 IFILDP-DGRILYVNPAFERLFGYSREE   30 (104)
T ss_dssp             EEEEET-TSBEEEE-HHHHHHHTS-HHH
T ss_pred             EEEECC-cCcEEehhHHHHHHHCcCHHH
Confidence            466776 89999999      7777655

...

>PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A

Probab=82.86  E-value=1  Score=30.34  Aligned_cols=33  Identities=15%  Similarity=0.366  Sum_probs=26.4

Q ss_pred             cccEEEEecCCCcEEEEc-------cCCCCCC-----------chhHHH-HHH
Q psy4919          36 DGFLFVVACDTGRVVVTG-------LGLPCSD-----------SVDIEK-VRE   69 (96)
Q Consensus        36 dGFl~Vvs~~~G~IlyvS-------Lg~~q~d-----------p~D~~e-~~e   69 (96)
                      +-|..-.+. +|+|+|+.       |||.+.|           |+|... +++
T Consensus         2 ~~F~trhs~-dgki~~~d~~~v~~~lgy~~~eLvG~s~y~~~H~~D~~~~~~~   53 (111)
T PF14598_consen    2 EEFTTRHSL-DGKITYVDSRAVSSLLGYLPEELVGRSIYDFVHPDDLQRVLKQ   53 (111)
T ss_dssp             -EEEEEEET-TSBEEEEETTHHHHHHSS-HHHHTTSBGGGGBSCCTHHHHHHH
T ss_pred             ceEEEEECC-CcEEEEEcCccChhhcCCCcHHHcCCchHHhCCHhhhhhHHHH
Confidence            458888998 99999998       8999988           999997 543

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	96
4f3l_B	387	Crystal Structure Of The Heterodimeric Clock:bmal1		8e-15

>pdb|4F3L|B Chain B, Crystal Structure Of The Heterodimeric Clock:bmal1 Transcriptional Activator Complex Length = 387

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 17/96 (17%)
Query: 10  NTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG--------------LG 55
           N  T+  YKP+FL+D ELKHLIL AADGFLFVV CD G+++                 +G
Sbjct: 70  NPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIG 129
Query: 56  LPCSDSV---DIEKVREQLSTQEPQNAGRILDLKTG 88
               D +   DI KV+EQLS+ +     R++D KTG
Sbjct: 130 QSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTG 165

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	96
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	3e-15
4f3l_A	361	Mclock, circadian locomoter output cycles protein	3e-11
3gdi_A	309	Period circadian protein homolog 2; tandem PAS dom	7e-11
4dj2_A	320	Period circadian protein homolog 1; PAS domains, c	1e-09
4dj3_A	317	Period circadian protein homolog 3; PAS domain, ci	1e-06
3rty_A	339	Period circadian protein; PAS domain, signalling,	3e-04

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387

 Score = 68.1 bits (166), Expect = 3e-15
 Identities = 46/107 (42%), Positives = 59/107 (55%), Gaps = 18/107 (16%)

Query: 8   TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRV------VVTGLGLPCSD- 60
             N  T+  YKP+FL+D ELKHLIL AADGFLFVV CD G++      V   L    +D 
Sbjct: 68  ATNPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDL 127

Query: 61  ---SV-------DIEKVREQLSTQEPQNAGRILDLKTG-TVKKEGHQ 96
              S+       DI KV+EQLS+ +     R++D KTG  VK +   
Sbjct: 128 IGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITP 174

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 361

 Score = 56.9 bits (137), Expect = 3e-11
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 18/94 (19%)

Query: 2   RESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRV------VVTGLG 55
           +E+  ++  +     +KP+FL+++E   L+LEA DGF   +  D G +      V + L 
Sbjct: 62  KETTAQSDASEIRQDWKPTFLSNEEFTQLMLEALDGFFLAIMTD-GSIIYVSESVTSLLE 120

Query: 56  LPCSD----SV-------DIEKVREQLSTQEPQN 78
              SD    S+       +  +V + LST   ++
Sbjct: 121 HLPSDLVDQSIFNFIPEGEHSEVYKILSTHLLES 154

>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus} Length = 309

 Score = 55.8 bits (134), Expect = 7e-11
 Identities = 9/79 (11%), Positives = 21/79 (26%), Gaps = 21/79 (26%)

Query: 19 PSFLT----DQELKHLILEAADGFLFVVACDTGRV------VVTGLGLPCSD----SV-- 62
           S  +    +      I++ AD F   V+  +G++      V +                
Sbjct: 4  GSSYSMEQVEGITSEYIVKNADMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDAKFVE 63

Query: 63 -----DIEKVREQLSTQEP 76
               D+       +  + 
Sbjct: 64 FLAPHDVSVFHSYTTPYKL 82

>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus} Length = 320

 Score = 52.7 bits (126), Expect = 1e-09
 Identities = 20/99 (20%), Positives = 29/99 (29%), Gaps = 27/99 (27%)

Query: 19  PSFLTDQELKHLI----LEAADGFLFVVACDTGRVV-----VTG-LGLPCSD----SV-- 62
            S  T +EL+H+     L   D F   V+  TGR+V         L              
Sbjct: 15  MSTYTLEELEHITSEYTLRNQDTFSVAVSFLTGRIVYISEQAGVLLRCKRDVFRGARFSE 74

Query: 63  -----DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
                D+       +        R+    TGT    G +
Sbjct: 75  LLAPQDVGVFYGSTTP------SRLPTWGTGTSAGSGLK 107

>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus} Length = 317

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 9/76 (11%), Positives = 19/76 (25%), Gaps = 21/76 (27%)

Query: 19 PSFLTDQELKHL----ILEAADGFLFVVACDTGRV------VVTGLGLPCSD-------- 60
           +  + ++L  L      +  D F  V +  +GR+          L              
Sbjct: 15 VTVYSLEDLTALASEHTSKNTDTFAAVFSFLSGRLVHISEQAALILNSKRGFLKSVHFVD 74

Query: 61 ---SVDIEKVREQLST 73
               D+       + 
Sbjct: 75 LLAPQDVRAFYAHTAP 90

>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A Length = 339

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 17/60 (28%)

Query: 35 ADGFLFVVACDTGRV------VVTGLGLPCSD-----------SVDIEKVREQLSTQEPQ 77
           D F  V++   G V      +   LG P                D      Q++T  P 
Sbjct: 2  EDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIPI 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	96
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	99.81
4dj2_A	320	Period circadian protein homolog 1; PAS domains, c	99.66
4dj3_A	317	Period circadian protein homolog 3; PAS domain, ci	99.54
4f3l_A	361	Mclock, circadian locomoter output cycles protein	99.49
3gdi_A	309	Period circadian protein homolog 2; tandem PAS dom	99.33
3rty_A	339	Period circadian protein; PAS domain, signalling,	98.64
2vlg_A	111	Sporulation kinase A; histidine kinase, two-compon	98.49
3f1p_B	121	ARYL hydrocarbon receptor nuclear translocator; PA	97.41
3f1p_A	117	Endothelial PAS domain-containing protein 1; PAS d	95.94
2kdk_A	121	ARYL hydrocarbon receptor nuclear translocator-LI	95.09
3icy_A	118	Sensor protein; sensory box histidine kinase/respo	94.92
3luq_A	114	Sensor protein; PAS, histidine, kinase, PSI, MCSG,	94.4
3nja_A	125	Probable ggdef family protein; structural genomics	92.38
3mr0_A	142	Sensory box histidine kinase/response regulator; P	91.99
3rty_A	339	Period circadian protein; PAS domain, signalling,	91.56
3eeh_A	125	Putative light and redox sensing histidine kinase;	91.29
3olo_A	118	Two-component sensor histidine kinase; structural	90.71
4dj2_A	320	Period circadian protein homolog 1; PAS domains, c	90.67
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	90.4
3mjq_A	126	Uncharacterized protein; NESG, structural genomics	90.39
3bwl_A	126	Sensor protein; structural genomics, APC87707.1, P	90.31
2gj3_A	120	Nitrogen fixation regulatory protein; PAS domain,	90.19
3h9w_A	115	Diguanylate cyclase with PAS/PAC sensor; alpha-bet	90.04
3gdi_A	309	Period circadian protein homolog 2; tandem PAS dom	89.97
4f3l_A	361	Mclock, circadian locomoter output cycles protein	89.76
2r78_A	117	Sensor protein; sensory box sensor histidine kinas	88.94
2ool_A	337	Sensor protein; bacteriophytochrome, photoconversi	88.4
4dj3_A	317	Period circadian protein homolog 3; PAS domain, ci	88.23
3lyx_A	124	Sensory BOX/ggdef domain protein; structural genom	87.08
1d06_A	130	Nitrogen fixation regulatory protein FIXL; oxygen	86.1
4hia_A	176	LOV protein; PAS, HTH, signaling protein; HET: FMN	84.07
3fc7_A	125	HTR-like protein, sensor protein; APC87712.1, HTR-	81.65
3b33_A	115	Sensor protein; structural genomics, PAS domain, n	81.64
1ll8_A	114	PAS kinase; PAS domain, ligand binding, ligand scr	81.61
2z6d_A	130	Phototropin-2; PAS-fold, LOV-fold, alternative spl	80.85

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.81  E-value=1.2e-20  Score=147.53  Aligned_cols=92  Identities=48%  Similarity=0.790  Sum_probs=61.8

Q ss_pred             cccccCCCCCCCCCCCCCCCChHHHHHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHH
Q psy4919           3 ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIE   65 (96)
Q Consensus         3 k~~rg~~~~~~~~~~kPsfls~~el~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~   65 (96)
                      |.++|..+...+.+|+|+|++++|+.+++++|+|||++|+++++|+|+|||      |||+|.|           |+|++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~gfi~v~~~~~G~i~yvs~~~~~~lG~~~~el~g~~~~~~ihp~D~~  142 (387)
T 4f3l_B           63 KTLRGATNPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIA  142 (387)
T ss_dssp             HHHHCC------CCSSCTTSCHHHHHHHHHHTCCSEEEEEETTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHH
T ss_pred             HHhhcccccccccccCcccCCHHHHHHHHHhcCCCEEEEEecCCeEEEEEchhhHHHcCCCHHHHCCCcHHHhcCCCCHH
Confidence            456677777778899999999999999999999999999999559999999      9999988           99999


Q ss_pred             HHHHHhCCCCCCCcccccccccc-eeeccC
Q psy4919          66 KVREQLSTQEPQNAGRILDLKTG-TVKKEG   94 (96)
Q Consensus        66 e~~eqL~~~~~~~~~r~~d~kt~-~~~~~~   94 (96)
                      +++++|+.+...|++|.+|++|| +++++.
T Consensus       143 ~~~~~L~~~~~~p~~~~~~~~tg~~~~~e~  172 (387)
T 4f3l_B          143 KVKEQLSSSDTAPRERLIDAKTGLPVKTDI  172 (387)
T ss_dssp             HHHHHHSCC---------------------
T ss_pred             HHHHHhcccccCccccccCcccCCccCCCC
Confidence            99999999988999999999999 466554

>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}

Probab=99.66  E-value=3.7e-17  Score=127.23  Aligned_cols=61  Identities=25%  Similarity=0.237  Sum_probs=54.1

Q ss_pred             CCCCCCCCCChHHHHHH----HHHhhcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHhC
Q psy4919          14 DGTYKPSFLTDQELKHL----ILEAADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQLS   72 (96)
Q Consensus        14 ~~~~kPsfls~~el~~l----~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL~   72 (96)
                      -+..+++|+|++||++|    +|||||||++||++++|+|+|||      |||+|.|           |+||++|++||.
T Consensus        10 ~~~~~~~~~s~eel~~l~~e~lLqaldGF~~vvs~~~G~i~yvS~sv~~~Lg~~~~~l~g~s~~d~iHp~D~~~f~~qL~   89 (320)
T 4dj2_A           10 PCAMDMSTYTLEELEHITSEYTLRNQDTFSVAVSFLTGRIVYISEQAGVLLRCKRDVFRGARFSELLAPQDVGVFYGSTT   89 (320)
T ss_dssp             ----CCSEECHHHHHHHHHHHTTSCSSEEEEEEETTTCBEEEECTHHHHHHTSCSTTTTTSBGGGGBCHHHHHHHHHHCC
T ss_pred             CcccCccccCHHHHHHHHHHHHHhccCCEEEEEECCCceEEEECcHHHHHhCcCHHHHcCCcHHHhcCHHHHHHHHHhhc
Confidence            35568999999999999    59999999999999679999999      9999999           999999999998


Q ss_pred             CC
Q psy4919          73 TQ   74 (96)
Q Consensus        73 ~~   74 (96)
                      ..
T Consensus        90 ~~   91 (320)
T 4dj2_A           90 PS   91 (320)
T ss_dssp             TT
T ss_pred             cc
Confidence            64

>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}

Probab=99.54  E-value=1.5e-15  Score=118.04  Aligned_cols=61  Identities=16%  Similarity=0.138  Sum_probs=55.6

Q ss_pred             CCCCCCCCCCCChHHHHHH----HHHhhcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHH
Q psy4919          12 STDGTYKPSFLTDQELKHL----ILEAADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQ   70 (96)
Q Consensus        12 ~~~~~~kPsfls~~el~~l----~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eq   70 (96)
                      +....-.++|+|++||.++    +|||||||++||++++|+|+|||      |||+|.|           |+|++++++|
T Consensus         8 ~~~~~~~~~~~s~~el~~~~~e~~L~aldgF~~vvs~~~G~i~yvS~~~~~~Lg~~~~el~g~s~~d~ihp~D~~~f~~q   87 (317)
T 4dj3_A            8 FPGRLEDVTVYSLEDLTALASEHTSKNTDTFAAVFSFLSGRLVHISEQAALILNSKRGFLKSVHFVDLLAPQDVRAFYAH   87 (317)
T ss_dssp             --CCCCCCCBCCTTTTTSTTHHHHTSCTTEEEEEEETTTCBEEEECTTHHHHTTCCHHHHHTSBGGGGBCGGGHHHHHHH
T ss_pred             CCCCccCccccCHHHHHhhhhHHHHhccCCEEEEEEcCCcEEEEECCHHHHHcCCCHHHHcCCchhhhcChhhHHHHHHh
Confidence            4567778999999999999    99999999999999669999999      9999988           9999999999


Q ss_pred             hC
Q psy4919          71 LS   72 (96)
Q Consensus        71 L~   72 (96)
                      |+
T Consensus        88 l~   89 (317)
T 4dj3_A           88 TA   89 (317)
T ss_dssp             TC
T ss_pred             hc
Confidence            94

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.49  E-value=2.2e-14  Score=110.51  Aligned_cols=65  Identities=31%  Similarity=0.515  Sum_probs=60.0

Q ss_pred             CCCCCCCCCCCCCChHHHHHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHhC
Q psy4919          10 NTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQLS   72 (96)
Q Consensus        10 ~~~~~~~~kPsfls~~el~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL~   72 (96)
                      +++...+|+|+|++++++.+++++|+|||++|+++ +|+|+|||      |||++.|           |+|+++++++|.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~i~v~~~-~G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~  148 (361)
T 4f3l_A           70 ASEIRQDWKPTFLSNEEFTQLMLEALDGFFLAIMT-DGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILS  148 (361)
T ss_dssp             CGGGTSCCSCTTSCHHHHHHHHHHHTTEEEEEEET-TSBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHH
T ss_pred             ccccccccCcccccHHHHHHHHHHhcCceEEEEcC-CccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhc
Confidence            34567899999999999999999999999999998 99999999      9999988           999999999998


Q ss_pred             CCC
Q psy4919          73 TQE   75 (96)
Q Consensus        73 ~~~   75 (96)
                      ...
T Consensus       149 ~~~  151 (361)
T 4f3l_A          149 THL  151 (361)
T ss_dssp             HCC
T ss_pred             cCC
Confidence            754

>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}

Probab=99.33  E-value=4e-13  Score=103.89  Aligned_cols=46  Identities=15%  Similarity=0.229  Sum_probs=33.8

Q ss_pred             HHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHhCC
Q psy4919          28 KHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQLST   73 (96)
Q Consensus        28 ~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL~~   73 (96)
                      ++++|||||||++||++++|+|+|||      |||+|+|           |+||+++++||..
T Consensus        17 ~~lll~a~dgF~~vvs~~~G~i~yvS~s~~~~Lg~~~~el~g~s~~d~iHp~D~~~~~~~L~~   79 (309)
T 3gdi_A           17 SEYIVKNADMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDAKFVEFLAPHDVSVFHSYTTP   79 (309)
T ss_dssp             CC----CTTEEEEEECTTTCBEEEECTTTTTTC-------CCSBGGGGBCTTTHHHHHHHTCT
T ss_pred             HHHHHHhcCCEEEEEECCCceEEEECCHHHHHcCCCHHHHcCCchhhccCHhHHHHHHHhccc
Confidence            67999999999999999669999999      9999999           9999999999975

>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A

Probab=98.64  E-value=2.3e-08  Score=78.11  Aligned_cols=43  Identities=30%  Similarity=0.388  Sum_probs=38.9

Q ss_pred             hcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHhCCCCCC
Q psy4919          35 ADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQLSTQEPQ   77 (96)
Q Consensus        35 ldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL~~~~~~   77 (96)
                      .|||++||++.+|+|+|||      |||+|.|           |+|+++++++|.+..+.
T Consensus         2 ~dgF~~vv~~~~G~i~yvS~~~~~~LGy~~~el~G~s~~d~ihp~D~~~f~~~L~~gl~~   61 (339)
T 3rty_A            2 EDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIPI   61 (339)
T ss_dssp             CSCEEEEEETTTCBEEEECTTHHHHHCCCTTSSTTSBGGGGBCHHHHHHHHHHHHTTSCC
T ss_pred             CcEEEEEEECCCcEEEEEChHHHHHcCCCHHHHCCCcHHHhcCHHHHHHHHHHHhcCCCC
Confidence            4999999996699999999      9999999           99999999999876543

>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}

Probab=98.49  E-value=5e-08  Score=63.61  Aligned_cols=44  Identities=20%  Similarity=0.259  Sum_probs=34.1

Q ss_pred             HHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHhCC
Q psy4919          29 HLILEAADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQLST   73 (96)
Q Consensus        29 ~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL~~   73 (96)
                      +.+|+++++|++|++. +|+|+|||      |||++.+           |+|++.+++++..
T Consensus         2 ~~lle~~~d~i~v~d~-~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~~   62 (111)
T 2vlg_A            2 EFPLQTKTDIHAVLAS-NGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFYN   62 (111)
T ss_dssp             -------CCEEEEECT-TSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHC
T ss_pred             cchhhcCCCEEEEEcC-CCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHhc
Confidence            5789999999999997 99999999      9999987           9999999998854

>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B

Probab=97.41  E-value=5.4e-05  Score=46.39  Aligned_cols=45  Identities=18%  Similarity=0.245  Sum_probs=34.5

Q ss_pred             HHHHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHh
Q psy4919          26 ELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQL   71 (96)
Q Consensus        26 el~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL   71 (96)
                      ||..+++++..-|+++++. +|+|+|++      +||.+.+           |+|.+.+++.+
T Consensus         2 ~~~~ll~e~~~d~i~~~d~-~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~   63 (121)
T 3f1p_B            2 EFKGLNVCQPTRFISRHNI-EGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSF   63 (121)
T ss_dssp             ------CCCCCEEEEEECT-TSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHH
T ss_pred             CcccceecCCCceEEEECC-CceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHH
Confidence            4667888888999999998 99999999      9999887           89988877654

>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A

Probab=95.94  E-value=0.0041  Score=37.37  Aligned_cols=34  Identities=15%  Similarity=0.202  Sum_probs=27.8

Q ss_pred             ccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHh
Q psy4919          37 GFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQL   71 (96)
Q Consensus        37 GFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL   71 (96)
                      -|+++++. +|+|+|++      +||++.+           |+|++.+++.+
T Consensus        10 ~~i~~~d~-~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~   60 (117)
T 3f1p_A           10 TFLSEHSM-DMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSH   60 (117)
T ss_dssp             EEEEEECT-TCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHH
T ss_pred             cEEEEECC-CceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHH
Confidence            46777787 99999999      8998876           89988877654

>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}

Probab=95.09  E-value=0.034  Score=33.16  Aligned_cols=37  Identities=19%  Similarity=0.299  Sum_probs=28.4

Q ss_pred             hhcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHh
Q psy4919          34 AADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQL   71 (96)
Q Consensus        34 AldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL   71 (96)
                      ...-+++++.. +|+|+|++      +||++.+           |+|.+.+.+.+
T Consensus        11 ~~~~~i~~~d~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~   64 (121)
T 2kdk_A           11 KPTEFITRFAV-NGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKH   64 (121)
T ss_dssp             CSSEEEEEECT-TSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHH
T ss_pred             CCccEEEEECC-CeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHH
Confidence            34557778887 99999999      9999877           77877665543

>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}

Probab=94.92  E-value=0.018  Score=33.62  Aligned_cols=46  Identities=9%  Similarity=0.127  Sum_probs=34.9

Q ss_pred             HHHHHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC-------------chhHHHHHHHh
Q psy4919          25 QELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD-------------SVDIEKVREQL   71 (96)
Q Consensus        25 ~el~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-------------p~D~~e~~eqL   71 (96)
                      ++.-..+++++.+.++++.. +|.++|++      +||.+.+             |+|++.+.+.+
T Consensus         3 ~~~~~~l~~~~~~~i~~~d~-~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~   67 (118)
T 3icy_A            3 AEELQALVDNIPAAIYHLDV-SGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAY   67 (118)
T ss_dssp             HHHHHHHHTTCCCCCEEECT-TSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHH
T ss_pred             HHHHHHHHhcCCceEEEEEc-CCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHH
Confidence            44445667777777888887 99999999      8876544             88988776654

>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}

Probab=94.40  E-value=0.083  Score=30.24  Aligned_cols=32  Identities=25%  Similarity=0.200  Sum_probs=26.1

Q ss_pred             HHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919          28 KHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD   60 (96)
Q Consensus        28 ~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d   60 (96)
                      -..+++++...++++.. +|+|+|++      +|+...+
T Consensus         5 ~~~~~~~~~~~i~~~d~-~g~i~~~N~~~~~~~g~~~~~   42 (114)
T 3luq_A            5 LRLFTEHAPAALAMFDR-EMRYLAVSRRWREDYGLGDGD   42 (114)
T ss_dssp             HHHHHHTCSSEEEEEET-TCBEEEECHHHHHHTTCCSSC
T ss_pred             HHHHHhcCCceEEEEcC-CcEEEEECHHHHHHHCCCHHH
Confidence            34567777777888887 99999999      8988877

>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}

Probab=92.38  E-value=0.26  Score=28.44  Aligned_cols=42  Identities=19%  Similarity=0.140  Sum_probs=27.1

Q ss_pred             HHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC-------------chhHHHHHHHh
Q psy4919          29 HLILEAADGFLFVVACDTGRVVVTG------LGLPCSD-------------SVDIEKVREQL   71 (96)
Q Consensus        29 ~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-------------p~D~~e~~eqL   71 (96)
                      ..+++++..-++++.. +|.++|++      +||.+.+             |+|.+.+.+.+
T Consensus        10 ~~~~~~~~~~i~~~d~-~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~   70 (125)
T 3nja_A           10 HTAESDAGIGSWVLHM-ESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRREL   70 (125)
T ss_dssp             -------CCEEEEEET-TTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHH
T ss_pred             HHHHHhCCeeEEEEEc-CCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHH
Confidence            3456666666788887 99999999      8998776             67776665543

>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}

Probab=91.99  E-value=0.24  Score=30.96  Aligned_cols=43  Identities=16%  Similarity=0.110  Sum_probs=33.8

Q ss_pred             HHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC-------------chhHHHHHHHh
Q psy4919          28 KHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD-------------SVDIEKVREQL   71 (96)
Q Consensus        28 ~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-------------p~D~~e~~eqL   71 (96)
                      -.+++++....++.... .|.++|+|      +||.+.+             |+|++.+...+
T Consensus        11 l~~~~~~~~~g~w~~d~-~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~   72 (142)
T 3mr0_A           11 FQLAVSGASAGLWDWNP-KTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAAL   72 (142)
T ss_dssp             HHHHHHHTTCEEEEECT-TTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHH
T ss_pred             HHHHHHhCCcEEEEEEc-CCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHH
Confidence            45677888777888887 88899999      8987643             99988877655

>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A

Probab=91.56  E-value=0.1  Score=40.41  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=28.5

Q ss_pred             cccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHH
Q psy4919          36 DGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQ   70 (96)
Q Consensus        36 dGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eq   70 (96)
                      .=|++..+. +|.++||+      |||.+.|           |+|++.+++.
T Consensus       154 ~~fi~r~~~-dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~  204 (339)
T 3rty_A          154 PKFAIRHTA-TGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKET  204 (339)
T ss_dssp             CEEEEEEET-TCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHH
T ss_pred             ceEEEEECC-CCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHH
Confidence            347777887 99999999      9999887           9999887754

>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}

Probab=91.29  E-value=0.13  Score=29.28  Aligned_cols=44  Identities=18%  Similarity=0.299  Sum_probs=31.9

Q ss_pred             HHHHHHHhhcccEEEEecCC-CcEEEEc------cCCCCCC-------------chhHHHHHHHh
Q psy4919          27 LKHLILEAADGFLFVVACDT-GRVVVTG------LGLPCSD-------------SVDIEKVREQL   71 (96)
Q Consensus        27 l~~l~LeAldGFl~Vvs~~~-G~IlyvS------Lg~~q~d-------------p~D~~e~~eqL   71 (96)
                      .-..+++++...++++.. + |+|+|++      +|+.+.+             |+|...+.+.+
T Consensus        12 ~~~~~~~~~~~~i~~~d~-~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (125)
T 3eeh_A           12 RVRELTEATNDILWEFTA-DLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTM   75 (125)
T ss_dssp             HHHHHHSCCCCEEEEEET-TSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCceEEEEEc-CCCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHH
Confidence            345567777777888888 6 9999999      7876544             67766665554

>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}

Probab=90.71  E-value=0.19  Score=29.09  Aligned_cols=32  Identities=9%  Similarity=0.092  Sum_probs=23.9

Q ss_pred             HHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919          28 KHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD   60 (96)
Q Consensus        28 ~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d   60 (96)
                      .+.+++++.--++++.. +|+|+|++      +||++.+
T Consensus        15 ~~~~~~~~~~~i~~~d~-~g~i~~~N~~~~~l~G~~~~e   52 (118)
T 3olo_A           15 AHYLINNAVEASFCLGD-NWQFLYVNDATCRMTEYSREQ   52 (118)
T ss_dssp             HHHHHHHCSSEEEEECT-TSBEEEECHHHHHHHCCCHHH
T ss_pred             HHHHHhcCCceEEEECC-CCcEEEEHHHHHHHHCCCHHH
Confidence            44566666555677786 99999999      8887655

>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}

Probab=90.67  E-value=0.12  Score=39.73  Aligned_cols=35  Identities=14%  Similarity=-0.100  Sum_probs=29.4

Q ss_pred             cccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHh
Q psy4919          36 DGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQL   71 (96)
Q Consensus        36 dGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL   71 (96)
                      .=|+...+. +|+++||+      |||.+.|           |+|++.+++.+
T Consensus       176 ~~Fitrh~~-dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~  227 (320)
T 4dj2_A          176 RIFTTRHTP-SCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIH  227 (320)
T ss_dssp             CEEEEEECT-TCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHH
T ss_pred             ceEEEEecC-CceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHH
Confidence            347777787 99999999      9999988           99999888653

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=90.40  E-value=0.12  Score=39.98  Aligned_cols=35  Identities=20%  Similarity=0.182  Sum_probs=28.7

Q ss_pred             cccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHh
Q psy4919          36 DGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQL   71 (96)
Q Consensus        36 dGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL   71 (96)
                      .-|+...+. +|+++||+      |||.+.|           |+|.+.+++.+
T Consensus       278 ~~fi~~~~~-dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~  329 (387)
T 4f3l_B          278 MEYVSRHAI-DGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECH  329 (387)
T ss_dssp             CEEEEEECT-TSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHH
T ss_pred             ceEEEEECC-CCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHH
Confidence            346777776 99999999      9999877           99999887654

>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}

Probab=90.39  E-value=0.12  Score=30.20  Aligned_cols=29  Identities=21%  Similarity=0.556  Sum_probs=23.3

Q ss_pred             HHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919          31 ILEAADGFLFVVACDTGRVVVTG------LGLPCSD   60 (96)
Q Consensus        31 ~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d   60 (96)
                      +++++...++++.. +|+|+|++      +|+.+.+
T Consensus         4 l~~~~~~~i~~~d~-~g~i~~~N~~~~~~~g~~~~~   38 (126)
T 3mjq_A            4 FLETIEDMILIINR-EGRLLYANTAVPKKLGYTHEE   38 (126)
T ss_dssp             TGGGCSSEEEEEET-TSBEEEECTHHHHHHSCCHHH
T ss_pred             HHhhCCceEEEEeC-CCcEEEEcHHHHHHHCCCHHH
Confidence            45666677788887 99999999      8888765

>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}

Probab=90.31  E-value=0.36  Score=28.68  Aligned_cols=30  Identities=20%  Similarity=0.362  Sum_probs=22.2

Q ss_pred             HHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919          30 LILEAADGFLFVVACDTGRVVVTG------LGLPCSD   60 (96)
Q Consensus        30 l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d   60 (96)
                      .+++++.--++++.. +|+|+|+.      +||++.+
T Consensus        21 ~l~e~~~~~i~~~d~-~g~i~~~N~a~~~~~G~~~~e   56 (126)
T 3bwl_A           21 ALFENSPDMIDVLDA-DGTICEVNQRFCAELGYDESE   56 (126)
T ss_dssp             HHHHHCSSEEEEECT-TCBEEEECHHHHHHHTCCGGG
T ss_pred             HHHhhCCcEEEEEcC-CCCEEEEcHHHHHHhCCCHHH
Confidence            455555555677776 99999999      8887755

>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}

Probab=90.19  E-value=0.45  Score=28.50  Aligned_cols=30  Identities=10%  Similarity=0.124  Sum_probs=22.2

Q ss_pred             HHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919          30 LILEAADGFLFVVACDTGRVVVTG------LGLPCSD   60 (96)
Q Consensus        30 l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d   60 (96)
                      .+++++.--++++.. +|+|+|+.      +||++.+
T Consensus         9 ~~~~~~~~~i~~~d~-~g~i~~~N~a~~~~~G~~~~e   44 (120)
T 2gj3_A            9 QTVEHAPIAISITDL-KANILYANRAFRTITGYGSEE   44 (120)
T ss_dssp             HHHHHCSSEEEEECT-TCBEEEECHHHHHHHCCCTTG
T ss_pred             HHHHhCCCeEEEECC-CCCEEeehHHHHHHHCcCHHH
Confidence            345555445566776 99999999      8998877

>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}

Probab=90.04  E-value=0.32  Score=28.80  Aligned_cols=33  Identities=24%  Similarity=0.198  Sum_probs=25.4

Q ss_pred             EEEEecCCCcEEEEc------cCCCCCC------------chhHHHHHHHh
Q psy4919          39 LFVVACDTGRVVVTG------LGLPCSD------------SVDIEKVREQL   71 (96)
Q Consensus        39 l~Vvs~~~G~IlyvS------Lg~~q~d------------p~D~~e~~eqL   71 (96)
                      ++.+...+|+++|+|      +||.+.+            |+|++.+.+.+
T Consensus         6 iw~~d~~~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~   56 (115)
T 3h9w_A            6 PWKINWQTMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFC   56 (115)
T ss_dssp             EEEEETTTTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHH
T ss_pred             EEEEEcCCCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHH
Confidence            455664599999999      9998866            88888776654

>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}

Probab=89.97  E-value=0.13  Score=39.28  Aligned_cols=33  Identities=15%  Similarity=-0.009  Sum_probs=28.1

Q ss_pred             cEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHh
Q psy4919          38 FLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQL   71 (96)
Q Consensus        38 Fl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL   71 (96)
                      |+...+. +|+++||+      |||.+.|           |+|++.+++.+
T Consensus       167 Fitrh~~-dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~  216 (309)
T 3gdi_A          167 FTTTHTP-NCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIH  216 (309)
T ss_dssp             EEEEECT-TCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHH
T ss_pred             EEEEecC-CCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHH
Confidence            7777777 99999999      9999988           99998876643

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=89.76  E-value=0.14  Score=38.87  Aligned_cols=35  Identities=11%  Similarity=0.096  Sum_probs=28.0

Q ss_pred             cccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHh
Q psy4919          36 DGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQL   71 (96)
Q Consensus        36 dGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL   71 (96)
                      .-|+...+. +|.++||+      |||.+.|           |+|.+.+.+.+
T Consensus       251 ~~f~~~~~~-dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~  302 (361)
T 4f3l_A          251 EEFTSRHSL-EWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCH  302 (361)
T ss_dssp             CEEEEEECT-TSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHH
T ss_pred             ceeEEEEcC-CceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHH
Confidence            456666776 99999999      9999877           99998776543

>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}

Probab=88.94  E-value=0.3  Score=29.64  Aligned_cols=32  Identities=22%  Similarity=0.500  Sum_probs=21.6

Q ss_pred             HHHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919          27 LKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD   60 (96)
Q Consensus        27 l~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d   60 (96)
                      +..++-.+.|| ++++.. +|+|+|+.      +||+..+
T Consensus        13 ~~~l~e~~~d~-i~~~d~-~g~i~~vN~a~~~l~Gy~~~e   50 (117)
T 2r78_A           13 YRALFEHAIDG-IFIMDA-EGHYLDVNPAICSAIGYTRDE   50 (117)
T ss_dssp             HHHHHHHCSSE-EEEECT-TSBEEEECHHHHHHHCCCHHH
T ss_pred             HHHHHhcCCce-EEEECC-CCCEEEecHHHHHHHCcCHHH
Confidence            34444444455 566776 99999999      7887655

>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9

Probab=88.40  E-value=0.37  Score=37.72  Aligned_cols=40  Identities=23%  Similarity=0.403  Sum_probs=32.4

Q ss_pred             cccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHhCCCC
Q psy4919          36 DGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQLSTQE   75 (96)
Q Consensus        36 dGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL~~~~   75 (96)
                      =|||+|+..++++|+++|      ||+.+.+           |.+.+.+++.|....
T Consensus        42 ~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~~~~l~~~l~~~~   98 (337)
T 2ool_A           42 HGYLFVVSETDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAARLTHALHGGD   98 (337)
T ss_dssp             TSEEEEECTTTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHHHHHHHHHCC--
T ss_pred             CEEEEEEECCCCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHHHHHHHHHHHhcCC
Confidence            399999997679999999      8888866           788889999886543

>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}

Probab=88.23  E-value=0.14  Score=39.27  Aligned_cols=33  Identities=15%  Similarity=-0.043  Sum_probs=28.0

Q ss_pred             ccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHH
Q psy4919          37 GFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQ   70 (96)
Q Consensus        37 GFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eq   70 (96)
                      =|+...+. +|+++||+      |||.+.|           |+|++.+++.
T Consensus       175 ~Fitrh~~-dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~  224 (317)
T 4dj3_A          175 IFTTTHTP-GCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAI  224 (317)
T ss_dssp             EEEEEECT-TSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHH
T ss_pred             ceEEEecC-CCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHH
Confidence            47777777 99999999      9999888           9998888754

>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}

Probab=87.08  E-value=0.59  Score=26.13  Aligned_cols=35  Identities=9%  Similarity=0.062  Sum_probs=26.3

Q ss_pred             HHHHHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919          25 QELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD   60 (96)
Q Consensus        25 ~el~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d   60 (96)
                      .+.-..+++++...++++.. +|+|+|++      +|+...+
T Consensus         6 ~~~~~~~~~~~~~~i~~~d~-~~~i~~~N~~~~~~~g~~~~~   46 (124)
T 3lyx_A            6 LKQRAKAFDYVFDAIVVTDL-QGFIIDWNKGSETLYGYSKEQ   46 (124)
T ss_dssp             HHHHHHGGGTCSSEEEEEET-TCBEEEECHHHHHHHCCCHHH
T ss_pred             HHHHHHHHhhcCceEEEECC-CCcEeehhhHHHHHhCCCHHH
Confidence            34445667777788888987 99999999      7776543

>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*

Probab=86.10  E-value=0.61  Score=28.30  Aligned_cols=30  Identities=23%  Similarity=0.317  Sum_probs=22.0

Q ss_pred             HHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919          30 LILEAADGFLFVVACDTGRVVVTG------LGLPCSD   60 (96)
Q Consensus        30 l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d   60 (96)
                      .+++++.--++++.. +|.|+|+.      +||+..+
T Consensus        20 ~l~~~~~d~i~~~d~-~g~i~~~N~a~~~l~Gy~~~e   55 (130)
T 1d06_A           20 SILDTVPDATVVSAT-DGTIVSFNAAAVRQFGYAEEE   55 (130)
T ss_dssp             HHHTTCSSEEEEEET-TSBEEEECHHHHHHHCCCHHH
T ss_pred             HHHhhCcCeEEEECC-CCeEEEEcHHHHHHHCCCHHH
Confidence            355555455667776 99999999      8888765

>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*

Probab=84.07  E-value=0.82  Score=28.91  Aligned_cols=31  Identities=16%  Similarity=0.226  Sum_probs=21.8

Q ss_pred             HHHHHhhcccEEEEecCC---CcEEEEc------cCCCCCC
Q psy4919          29 HLILEAADGFLFVVACDT---GRVVVTG------LGLPCSD   60 (96)
Q Consensus        29 ~l~LeAldGFl~Vvs~~~---G~IlyvS------Lg~~q~d   60 (96)
                      ..+++++.--++++.. +   |+|+|++      +||+..+
T Consensus        10 ~~~~~~~~~~i~~~d~-~~~~g~i~~~N~a~~~~~G~~~~e   49 (176)
T 4hia_A           10 RAVFDRSGVALTLVDM-SLPEQPVVLANPPFLRMTGYTEGQ   49 (176)
T ss_dssp             HHHHHHCSSCCEEEET-TSTTCCEEEECHHHHHHHTCCHHH
T ss_pred             HHHHhcCCCcEEEEec-CCCCCcEEEECHHHHHHHCcCHHH
Confidence            3456666555666776 6   9999999      7876644

>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}

Probab=81.65  E-value=0.35  Score=28.28  Aligned_cols=35  Identities=9%  Similarity=0.150  Sum_probs=22.1

Q ss_pred             HHHHHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919          25 QELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD   60 (96)
Q Consensus        25 ~el~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d   60 (96)
                      ++.-..+++++.-.++++.. +|+|+|+.      +||...+
T Consensus        18 ~~~~~~i~~~~~~~i~~~d~-~g~i~~~N~~~~~~~g~~~~~   58 (125)
T 3fc7_A           18 RKKFESLVSDSPDGIVHLTT-NGTILSVNPSMAGRLGADPDT   58 (125)
T ss_dssp             --------CCSCCEEEEEET-TSBEEEECHHHHHHHTSCHHH
T ss_pred             HHHHHHHHhcCCCeEEEEcC-CCeEEEECHHHHHHhCCCHHH
Confidence            33445667777777888887 99999999      7876654

>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}

Probab=81.64  E-value=1.6  Score=25.35  Aligned_cols=33  Identities=9%  Similarity=0.024  Sum_probs=26.2

Q ss_pred             HHHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919          27 LKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD   60 (96)
Q Consensus        27 l~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d   60 (96)
                      +...+++++.--++++.. +|+|+|+.      +|+...+
T Consensus         8 l~~~il~~~~~~i~~~D~-~g~I~~~N~aa~~l~g~~~~~   46 (115)
T 3b33_A            8 LPSAILNNMVTATLILDD-GLAIRYANPAAELLFSQSAKR   46 (115)
T ss_dssp             HHHHHHHHCSSEEEEECT-TCBEEEECHHHHHHTTSCHHH
T ss_pred             cHHHHHhhcCceEEEECC-CCcEEEECHHHHHHhCCCHHH
Confidence            455678888777788887 99999998      8887654

>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5

Probab=81.61  E-value=1.4  Score=25.96  Aligned_cols=21  Identities=29%  Similarity=0.605  Sum_probs=17.6

Q ss_pred             EEEEecCC-CcEEEEc------cCCCCCC
Q psy4919          39 LFVVACDT-GRVVVTG------LGLPCSD   60 (96)
Q Consensus        39 l~Vvs~~~-G~IlyvS------Lg~~q~d   60 (96)
                      ++++.. + |+|+|+.      |||++.+
T Consensus        11 i~~~d~-~~g~I~~~N~aa~~l~G~~~~e   38 (114)
T 1ll8_A           11 IFTVDA-KTTEILVANDKACGLLGYSSQD   38 (114)
T ss_dssp             EEEEET-TTCBEEEECTTHHHHHTCCTTT
T ss_pred             EEEEEC-CCCeEEEehHHHHHHhCCCHHH
Confidence            456776 6 9999998      9999888

>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*

Probab=80.85  E-value=2.5  Score=23.50  Aligned_cols=30  Identities=13%  Similarity=0.113  Sum_probs=23.2

Q ss_pred             HHHHHhhcccEEEEe---cCCCcEEEEc------cCCCCC
Q psy4919          29 HLILEAADGFLFVVA---CDTGRVVVTG------LGLPCS   59 (96)
Q Consensus        29 ~l~LeAldGFl~Vvs---~~~G~IlyvS------Lg~~q~   59 (96)
                      ..+++++...++++.   . +|.|+|++      +|+...
T Consensus         9 ~~~~~~~~~~i~~~d~~d~-~~~i~~~N~~~~~~~g~~~~   47 (130)
T 2z6d_A            9 KTALSTLQQTFVVSDATQP-HCPIVYASSGFFTMTGYSSK   47 (130)
T ss_dssp             HHHHHHTTCEEEEEETTST-TCCEEEECHHHHHHHCCCHH
T ss_pred             HHHHHhcccceeeeeccCC-CCcEEEecHHHHHHhCcCHH
Confidence            456777777788888   6 99999999      776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	96
d2oola2	114	Sensor protein PhyB2 {Rhodopseudomonas palustris [	97.87
d1p97a_	114	Hypoxia-inducible factor Hif2a, C-terminal domain	95.68
d1ll8a_	114	N-terminal PAS domain of Pas kinase {Human (Homo s	92.45
d2veaa3	127	Phytochrome-like protein Cph1 {Synechocystis sp. p	92.29
d2o9ca2	127	Bacteriophytochrome BphP {Deinococcus radiodurans	91.77
d1oj5a_	109	PAS domain of steroid receptor coactivator 1A, NCo	90.08
d3c2wa3	113	Bacteriophytochrome BphP {Pseudomonas aeruginosa [	89.98
d1v9ya_	113	Direct oxygen sensor protein, DOS {Escherichia col	88.82
d1ew0a_	130	Histidine kinase FixL heme domain {Rhizobium melil	88.71
d1n9la_	109	Putative blue light receptor, phot-lov1 domain {Gr	87.44
d1xj3a1	106	Histidine kinase FixL heme domain {Bradyrhizobium	85.95
d1jnua_	104	Photoreceptor phy3 flavin-binding domain, lov2 {Ma	82.34

>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: BphP N-terminal domain-like
domain: Sensor protein PhyB2
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=97.87  E-value=5.4e-06  Score=52.70  Aligned_cols=41  Identities=24%  Similarity=0.455  Sum_probs=34.8

Q ss_pred             cccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHhCCCCC
Q psy4919          36 DGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQLSTQEP   76 (96)
Q Consensus        36 dGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL~~~~~   76 (96)
                      -|||+|+...+|+|+|+|      ||+.+.+           |+|.+.+++.|.....
T Consensus        17 hG~Llvld~~d~~I~~vS~N~~~lLG~~~~~llG~~l~dll~~~~~~~i~~~l~~~~~   74 (114)
T d2oola2          17 HGYLFVVSETDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAARLTHALHGGDP   74 (114)
T ss_dssp             TSEEEEECTTTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHHHHHHHHHCC---
T ss_pred             CcEEEEEECCCCEEEEEcCCHHHHhCCChHHHcCCCHHHhCCHHHHHHHHHHHhcCCc
Confidence            599999997689999999      9998887           9999999999987554

>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Hypoxia-inducible factor Hif2a, C-terminal domain
domain: Hypoxia-inducible factor Hif2a, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0013  Score=39.63  Aligned_cols=37  Identities=16%  Similarity=0.238  Sum_probs=29.2

Q ss_pred             hhcccEEE--EecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHh
Q psy4919          34 AADGFLFV--VACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQL   71 (96)
Q Consensus        34 AldGFl~V--vs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL   71 (96)
                      |||-..||  .+. +|+|+|++      |||++.|           |+|++.+++.+
T Consensus         2 a~d~~~fi~r~~~-dG~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~ed~~~~~~~~   57 (114)
T d1p97a_           2 AMDSKTFLSRHSM-DMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSH   57 (114)
T ss_dssp             CCCCEEEEEEECT-TTSCSEECTTHHHHTSSCHHHHTTSCHHHHSCSSSHHHHHHHH
T ss_pred             CcCcCEEEEEECC-CCcEEEECHHHHHHcCCCccccccccccccccccccccceeee
Confidence            56655555  576 99999999      9999888           88988777663

>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: N-terminal PAS domain of Pas kinase
domain: N-terminal PAS domain of Pas kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.45  E-value=0.067  Score=31.96  Aligned_cols=40  Identities=23%  Similarity=0.338  Sum_probs=29.1

Q ss_pred             hhcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHhCC
Q psy4919          34 AADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQLST   73 (96)
Q Consensus        34 AldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL~~   73 (96)
                      +++=-++++..++|+|+|+.      |||+..+           +++.+.+.+.+..
T Consensus         6 ~~n~AI~~id~~~G~I~~~N~a~~~l~Gy~~~el~g~~~~~l~~~~~~~~~~~~~~~   62 (114)
T d1ll8a_           6 EFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEE   62 (114)
T ss_dssp             TTTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSS
T ss_pred             hcCcEEEEEECCCCEEEEECHHHHHhhcCCHHHHcCCCeeeecCcccHHHHHHHHHH
Confidence            34444788886589999999      9999888           6666666665443

>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: BphP N-terminal domain-like
domain: Phytochrome-like protein Cph1
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.29  E-value=0.07  Score=34.56  Aligned_cols=40  Identities=20%  Similarity=0.343  Sum_probs=25.7

Q ss_pred             cccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHhCCCC
Q psy4919          36 DGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQLSTQE   75 (96)
Q Consensus        36 dGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL~~~~   75 (96)
                      -|||+|+..+++.|.++|      ||..+.+           +.....+++.+....
T Consensus        26 hG~LLald~~~~~I~~aS~N~~~~lG~~~~~lLG~~l~~ll~~~~~~~l~~~l~~~~   82 (127)
T d2veaa3          26 HGLVVVLQEPDLTISQISANCTGILGRSPEDLLGRTLGEVFDSFQIDPIQSRLTAGQ   82 (127)
T ss_dssp             TSEEEEEETTTTEEEEEETTHHHHTSCCTTTSSTTTTTTTSBCC--------CCCTT
T ss_pred             CeEEEEEECCCCEEEEEcCCHHHHhCcChHHHcCCCHHHHCCHHHHHHHHHHhhccC
Confidence            499999997689999999      8887766           666677777776543

>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: BphP N-terminal domain-like
domain: Bacteriophytochrome BphP
species: Deinococcus radiodurans [TaxId: 1299]

Probab=91.77  E-value=0.08  Score=34.18  Aligned_cols=41  Identities=20%  Similarity=0.268  Sum_probs=31.0

Q ss_pred             cccEEEEecCCCcEEEEc------cCCCCCC----------chhHHHHHHHhCCCCC
Q psy4919          36 DGFLFVVACDTGRVVVTG------LGLPCSD----------SVDIEKVREQLSTQEP   76 (96)
Q Consensus        36 dGFl~Vvs~~~G~IlyvS------Lg~~q~d----------p~D~~e~~eqL~~~~~   76 (96)
                      =|||+|+..+++.|.++|      ||+...+          +.+...++..+.....
T Consensus        35 hG~LLald~~~~~I~~~S~N~~~~lG~~~~~llG~~l~~ll~~~~~~~~~~~~~~~~   91 (127)
T d2o9ca2          35 HGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCP   91 (127)
T ss_dssp             TSEEEEEETTTCBEEEEETTHHHHHSSCHHHHTTCBHHHHCTTTHHHHHHHSCTTCC
T ss_pred             CeEEEEEECCCCEEEEECCCHHHHhCCChHHHcCCCHHHHCCHHHHHHHHHhhhcCc
Confidence            599999997789999999      7776655          5666666666665443

>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: PAS domain of steroid receptor coactivator 1A, NCo-A1
domain: PAS domain of steroid receptor coactivator 1A, NCo-A1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.08  E-value=0.025  Score=34.92  Aligned_cols=25  Identities=20%  Similarity=0.395  Sum_probs=21.7

Q ss_pred             hcccEEEEecCCCcEEEEc------cCCCC-CC
Q psy4919          35 ADGFLFVVACDTGRVVVTG------LGLPC-SD   60 (96)
Q Consensus        35 ldGFl~Vvs~~~G~IlyvS------Lg~~q-~d   60 (96)
                      ++.|+.-.+. +|+|+||+      +||.+ +|
T Consensus         1 ~e~F~trh~~-~g~~~~vd~~~~~~~gy~~~ee   32 (109)
T d1oj5a_           1 VESFMTKQDT-TGKIISIDTSSLRAAGRTGWED   32 (109)
T ss_dssp             CCEEEEEECT-TCCEEEEECHHHHTTCCSCHHH
T ss_pred             CceEEEEECC-CceEEEECHHHhhHhhcCCHHH
Confidence            4679999998 99999998      99996 56

>d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: BphP N-terminal domain-like
domain: Bacteriophytochrome BphP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.98  E-value=0.25  Score=30.99  Aligned_cols=39  Identities=23%  Similarity=0.352  Sum_probs=30.3

Q ss_pred             cccEEEEecCCCcEEEEc------cCCCCCC----------chhHHHHHHHhCCCC
Q psy4919          36 DGFLFVVACDTGRVVVTG------LGLPCSD----------SVDIEKVREQLSTQE   75 (96)
Q Consensus        36 dGFl~Vvs~~~G~IlyvS------Lg~~q~d----------p~D~~e~~eqL~~~~   75 (96)
                      =|||+|+.. ++.|+++|      ||+.+..          +.-...+++.+....
T Consensus        22 hG~LLald~-~~~I~~~S~N~~~~lg~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~   76 (113)
T d3c2wa3          22 HGALVTLRA-DGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNG   76 (113)
T ss_dssp             TEEEEEECT-TSBEEEEETTHHHHTSSCCCTTCBCCHHHHHHHHHHHHHHHHSCSS
T ss_pred             CeEEEEEcC-CCeEEEEcCCHHHHhCCChhHhcccHHHHhCHHHHHHHHhhhhcCC
Confidence            499999997 89999999      8987654          555666777776554

>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Heme-binding PAS domain
domain: Direct oxygen sensor protein, DOS
species: Escherichia coli [TaxId: 562]

Probab=88.82  E-value=0.11  Score=29.76  Aligned_cols=30  Identities=10%  Similarity=0.153  Sum_probs=22.5

Q ss_pred             HHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919          29 HLILEAADGFLFVVACDTGRVVVTG------LGLPCSD   60 (96)
Q Consensus        29 ~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d   60 (96)
                      ..+-++.||.++ +.. +|+|+|+.      +||++.+
T Consensus         5 ~~~e~~~d~i~~-~d~-~g~i~~~N~~~~~l~Gy~~~e   40 (113)
T d1v9ya_           5 PALEQNMMGAVL-INE-NDEVMFFNPAAEKLWGYKREE   40 (113)
T ss_dssp             HHHHTCSSEEEE-ECT-TSBEEEECHHHHHHHSCCGGG
T ss_pred             HHHHcCcCcEEE-EeC-CCCEEEEchhHhhhhccchhh
Confidence            344456676655 566 99999999      9998877

>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Heme-binding PAS domain
domain: Histidine kinase FixL heme domain
species: Rhizobium meliloti [TaxId: 382]

Probab=88.71  E-value=0.085  Score=31.41  Aligned_cols=30  Identities=23%  Similarity=0.317  Sum_probs=21.9

Q ss_pred             HHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919          30 LILEAADGFLFVVACDTGRVVVTG------LGLPCSD   60 (96)
Q Consensus        30 l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d   60 (96)
                      -+++++.--++++.. +|+|+|++      +||++.+
T Consensus        20 ~i~~~~~~~i~~~d~-~g~i~~~N~~~~~l~Gy~~~e   55 (130)
T d1ew0a_          20 SILDTVPDATVVSAT-DGTIVSFNAAAVRQFGYAEEE   55 (130)
T ss_dssp             HHHTTCSSEEEEEET-TSBEEEECHHHHHHHCCCHHH
T ss_pred             HHHHcCCCeEEEEeC-CccEEEEHHHHHHhhcCCHHH
Confidence            345555444566787 99999999      8888766

>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Flavin-binding PAS domain
domain: Putative blue light receptor, phot-lov1 domain
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=87.44  E-value=0.13  Score=30.48  Aligned_cols=25  Identities=16%  Similarity=0.170  Sum_probs=17.1

Q ss_pred             cccEEEEec-CCCcEEEEc------cCCCCCC
Q psy4919          36 DGFLFVVAC-DTGRVVVTG------LGLPCSD   60 (96)
Q Consensus        36 dGFl~Vvs~-~~G~IlyvS------Lg~~q~d   60 (96)
                      ++|+++=++ .+|+|+|++      +||+..|
T Consensus         4 ~~~vi~Da~~pdg~Ii~vN~a~~~~~Gy~~~E   35 (109)
T d1n9la_           4 HTFVVADATLPDCPLVYASEGFYAMTGYGPDE   35 (109)
T ss_dssp             CEEEEEETTSTTCCEEEECHHHHHHHCCCHHH
T ss_pred             ceEEEEeCCCCCCeEEEEcHHHHHHHCcCHHH
Confidence            456655332 279999999      7777665

>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Heme-binding PAS domain
domain: Histidine kinase FixL heme domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=85.95  E-value=0.25  Score=27.66  Aligned_cols=21  Identities=14%  Similarity=0.309  Sum_probs=17.2

Q ss_pred             EEEEecCCCcEEEEc------cCCCCCC
Q psy4919          39 LFVVACDTGRVVVTG------LGLPCSD   60 (96)
Q Consensus        39 l~Vvs~~~G~IlyvS------Lg~~q~d   60 (96)
                      ++++.. +|+|+|+.      +||+..+
T Consensus         3 i~~~D~-~G~I~~~N~a~~~l~Gy~~~e   29 (106)
T d1xj3a1           3 MIVIDG-HGIIQLFSTAAERLFGWSELE   29 (106)
T ss_dssp             EEEEET-TSBEEEECHHHHHHHCCCHHH
T ss_pred             EEEECC-CCcEEEEcHHHHHHhhhchHh
Confidence            466776 99999999      8887766

>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Flavin-binding PAS domain
domain: Photoreceptor phy3 flavin-binding domain, lov2
species: Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]

Probab=82.34  E-value=0.25  Score=28.54  Aligned_cols=15  Identities=0%  Similarity=0.124  Sum_probs=12.4

Q ss_pred             CCcEEEEc------cCCCCCC
Q psy4919          46 TGRVVVTG------LGLPCSD   60 (96)
Q Consensus        46 ~G~IlyvS------Lg~~q~d   60 (96)
                      +|+|+|++      +||+..+
T Consensus        12 d~~I~y~N~a~~~~~G~s~~e   32 (104)
T d1jnua_          12 DNPIIFASDRFLELTEYTREE   32 (104)
T ss_dssp             TCCEEEECHHHHHHHTCCHHH
T ss_pred             CCEEEEEcHHHHHHHCcCHHH
Confidence            79999999      7777655