Psyllid ID: psy4937

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
MDRSNFCGCKGVRTCIKCEQEFGYENKNIVEFTEETYIYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDFLTSQTKETYVYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDFLSEAETEDVMKQLDDLPWDKSQSGRRKQNFGPKCNFKKQKIKLGDFQGFPACTKFIQDRFHQEDVLSHFQTIEQCTLEYNSENGSSIDNHIDDCWIWGERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSIVNETLSSVVIRIPMPARSLLVLWGEARYEWQHCVLRSDVIGRRVCIAYREFTAPYMNNEATASVFEKAKCFF
cccccccccccEEEEEcccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccccccccccccEEEEEccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEcccccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHcc
cccccccccccEEEEHHHHHcccccccccccccccEEEEEEccccccccccEEEEcccccccccccccccccHHHHHHHHcccccEEEcccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHccccccccccccEEcccccEEEcccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccccccccEEEEEccccccEEEEEccccccccEcccccEEEEEcccccccccccccccccccccccccccccccEEEEEEccccEEEEEEcccHEEEEcccccccccccEEEEEEEcccHHHccccccHHHHHHHHHcc
mdrsnfcgckgvrtcikceqefgyenknivEFTEEtyiycphcnkawqgsdlyayqshpnhsgksfdiggvyikedfltsqtketyvycphcnkawqgsdlyayqshpnhsgksfdiggvyikedflseaeTEDVMKQLddlpwdksqsgrrkqnfgpkcnfkkqkiklgdfqgfpactkfiqdrfhqedvLSHFQTIEQCTLeynsengssidnhiddcwiwgERIVTVNLIGDSVLTLTyyngdsnkynlnspcfsyqkkypdqkstivndlslnekstdSIVNETLSSVVIRIPMPARSLLVLWGEARYEWQHCVLRSDVIGRRVCIAYREftapymnneataSVFEKAKCFF
mdrsnfcgckgvrtcikceqefgyENKNIVEFTEETYIYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDFLTSQTKETYVYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDFLSEAETEDVMKQLDdlpwdksqsgrrkqnfgpkcnfkkqkikLGDFQGFPACTKFIQDRFHQEDVLSHFQTIEQCTLEynsengssiDNHIDDCWIWGERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSIVNETlssvviripmPARSLLVLWGEARYEWQHcvlrsdvigRRVCIAYREFtapymnneatasvFEKAKCFF
MDRSNFCGCKGVRTCIKCEQEFGYENKNIVEFTEETYIYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDFLTSQTKETYVYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDFLSEAETEDVMKQLDDLPWDKSQSGRRKQNFGPKCNFKKQKIKLGDFQGFPACTKFIQDRFHQEDVLSHFQTIEQCTLEYNSENGSSIDNHIDDCWIWGERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSIVNETLSSVVIRIPMPARSLLVLWGEARYEWQHCVLRSDVIGRRVCIAYREFTAPYMNNEATASVFEKAKCFF
*****FCGCKGVRTCIKCEQEFGYENKNIVEFTEETYIYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDFLTSQTKETYVYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDFLS******************************KCNFKKQKIKLGDFQGFPACTKFIQDRFHQEDVLSHFQTIEQCTL************HIDDCWIWGERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYP****TIVNDL*******DSIVNETLSSVVIRIPMPARSLLVLWGEARYEWQHCVLRSDVIGRRVCIAYREFTAPYMNNEATASVFE******
***SNFCGCKGVRTCIKCEQEFGYENKNIVEFTEETYIYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDFLTSQTKETYVYCPHCNKAWQGSDL************SFDIGGVYIKEDFLSEAETEDVMKQLDDLPWDKSQSGRRKQNFGPKCNFKKQKIKLGDFQGFPACTKFIQDRFHQEDVLSHFQTIEQCTLEYNSENGSSIDNHIDDCWIWGERIVTVNLIGDSVLTLTYYN********************************************LSSVVIRIPMPARSLLVLWGEARYEWQHCVLRSDVIGRRVCIAYREFTAPYM*******VFEKAKCFF
MDRSNFCGCKGVRTCIKCEQEFGYENKNIVEFTEETYIYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDFLTSQTKETYVYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDFLSEAETEDVMKQLDDLPWDKSQSGRRKQNFGPKCNFKKQKIKLGDFQGFPACTKFIQDRFHQEDVLSHFQTIEQCTLEYNSENGSSIDNHIDDCWIWGERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSIVNETLSSVVIRIPMPARSLLVLWGEARYEWQHCVLRSDVIGRRVCIAYREFTAPYMNNEATASVFEKAKCFF
****NFCGCKGVRTCIKCEQEFGYENKNIVEFTEETYIYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDFLTSQTKETYVYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDFLSEAETEDVMKQLDDLPWDKSQSGRRKQNFGPKCNFKKQKIKLGDFQGFPACTKFIQDRFHQEDVLSHFQTIEQCTLEYNSENGSSIDNHIDDCWIWGERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYP************************LSSVVIRIPMPARSLLVLWGEARYEWQHCVLRSDVIGRRVCIAYREFTAPYMNNEATASVFEKAKCFF
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
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MDRSNFCGCKGVRTCIKCEQEFGYENKNIVEFTEETYIYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDFLTSQTKETYVYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDFLSEAETEDVMKQLDDLPWDKSQSGRRKQNFGPKCNFKKQKIKLGDFQGFPACTKFIQDRFHQEDVLSHFQTIEQCTLEYNSENGSSIDNHIDDCWIWGERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSIVNETLSSVVIRIPMPARSLLVLWGEARYEWQHCVLRSDVIGRRVCIAYREFTAPYMNNEATASVFEKAKCFF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query356 2.2.26 [Sep-21-2011]
Q9NXW9302 Alpha-ketoglutarate-depen yes N/A 0.727 0.857 0.302 6e-44
Q9D8F1300 Alpha-ketoglutarate-depen yes N/A 0.735 0.873 0.314 8e-44
>sp|Q9NXW9|ALKB4_HUMAN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 4 OS=Homo sapiens GN=ALKBH4 PE=1 SV=1 Back     alignment and function desciption
 Score =  178 bits (451), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 160/337 (47%), Gaps = 78/337 (23%)

Query: 7   CGCKGVRTCIKCEQEFGYENKNIVEFTEETYIYCPHCNKAWQGSDLYAYQSHPNHSGKSF 66
           CGCKG+RTC+ CE++ G                    +  W+      Y+          
Sbjct: 15  CGCKGIRTCLICERQRGS-------------------DPPWELPPAKTYR---------- 45

Query: 67  DIGGVYIKEDFLTSQTKETYVYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDF 126
                              ++YC   +  W            +  G +F   GV + EDF
Sbjct: 46  -------------------FIYC--SDTGWA-----VGTEESDFEGWAFPFPGVMLIEDF 79

Query: 127 LSEAETEDVMKQLDDLPWDKSQSGRRKQNFGPKCNFKKQKIKLGDFQGFPACTKFIQDRF 186
           ++  E  ++++ +D  PW  SQSGRRKQ++GPK NF+KQK+K   F G P+ ++ +  R 
Sbjct: 80  VTREEEAELVRLMDRDPWKLSQSGRRKQDYGPKVNFRKQKLKTEGFCGLPSFSREVVRRM 139

Query: 187 HQEDVLSHFQTIEQCTLEYNSENGSSIDNHIDDCWIWGERIVTVNLIGDSVLTLTYYNGD 246
                L  F+ +EQC L+Y  E GS+ID H+DD W+WGER+V++NL+  +VL++      
Sbjct: 140 GLYPGLEGFRPVEQCNLDYCPERGSAIDPHLDDAWLWGERLVSLNLLSPTVLSMC----- 194

Query: 247 SNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSIVNETLS----SVVIRIPMPARS 302
                         ++ P          +  E   DS++  + S     V + IP+PARS
Sbjct: 195 --------------REAPGSLLLCSAPSAAPEALVDSVIAPSRSVLCQEVEVAIPLPARS 240

Query: 303 LLVLWGEARYEWQHCVLRSDVIGRRVCIAYREFTAPY 339
           LLVL G AR++W+H + R  +  RRVC+ +RE +A +
Sbjct: 241 LLVLTGAARHQWKHAIHRRHIEARRVCVTFRELSAEF 277
Probable dioxygenase that requires molecular oxygen, alpha-ketoglutarate and iron.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q9D8F1|ALKB4_MOUSE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 4 OS=Mus musculus GN=Alkbh4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query356
332028068300 Alkylated DNA repair protein alkB-like p 0.820 0.973 0.450 6e-85
383858126300 PREDICTED: probable alpha-ketoglutarate- 0.825 0.98 0.455 3e-84
345485379294 PREDICTED: probable alpha-ketoglutarate- 0.800 0.969 0.433 2e-80
66554392296 PREDICTED: probable alpha-ketoglutarate- 0.820 0.986 0.423 2e-80
357617084324 hypothetical protein KGM_10717 [Danaus p 0.834 0.916 0.435 3e-79
340727539300 PREDICTED: probable alpha-ketoglutarate- 0.828 0.983 0.420 2e-78
350423117300 PREDICTED: probable alpha-ketoglutarate- 0.828 0.983 0.417 5e-78
307183142298 Alkylated DNA repair protein alkB-like p 0.825 0.986 0.416 9e-77
170051906318 conserved hypothetical protein [Culex qu 0.828 0.927 0.430 2e-74
91087937306 PREDICTED: similar to CG4036 CG4036-PA [ 0.823 0.957 0.430 1e-73
>gi|332028068|gb|EGI68119.1| Alkylated DNA repair protein alkB-like protein 4 [Acromyrmex echinatior] Back     alignment and taxonomy information
 Score =  320 bits (820), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 164/364 (45%), Positives = 216/364 (59%), Gaps = 72/364 (19%)

Query: 1   MDRSNFCGCKGVRTCIKCEQEFGYENKNIVEFTEETYIYCPHCNKAWQGSDLYAYQSHPN 60
           M+    CGCKG+R+C+ CE E+                                  S PN
Sbjct: 1   METVRPCGCKGIRSCLICETEYEI--------------------------------SKPN 28

Query: 61  HSGKSFDIGGVYIKEDFLTSQTKETYVYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGV 120
                       +K +    Q  ++Y+YCP+CNK   G D+  Y+ HPNHSG   +  GV
Sbjct: 29  ------------LKNEL---QKSKSYIYCPYCNKLLSGWDIDEYKKHPNHSGNLINYPGV 73

Query: 121 YIKEDFLSEAETEDVMKQLDDLPWDKSQSGRRKQNFGPKCNFKKQKIKLGDFQGFPACTK 180
           YIK DFL E E E++MK LDDLPW  SQSGRRKQNFGPKCNFKK+K++LG F GFP  T+
Sbjct: 74  YIKLDFLKEDEAEELMKALDDLPWQPSQSGRRKQNFGPKCNFKKRKLQLGSFNGFPKTTQ 133

Query: 181 FIQDRFHQEDVLSHFQTIEQCTLEYNSENGSSIDNHIDDCWIWGERIVTVNLIGDSVLTL 240
           F+Q +F +  +L  F+T+EQCTLEYN E G+SID+H+DDCWIWGERI+TVN++GDSVLT+
Sbjct: 134 FVQKKFEEISLLHGFETVEQCTLEYNPERGASIDSHVDDCWIWGERIITVNVLGDSVLTM 193

Query: 241 TYYNGDSNKYNL----NSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSIVNETLSSVVIRI 296
           T Y G   +YNL    N      +  Y D  S  ++D                 ++V+R+
Sbjct: 194 TPYRGPITRYNLDYVSNYDFILKKDIYDDTHSLGIDD-----------------NIVVRL 236

Query: 297 PMPARSLLVLWGEARYEWQHCVLRSDVIGRRVCIAYREFTAPYMNN----EATASVFEKA 352
           PMPARSL+VL+G ARY+W+H VLR DV  RRVC+AYRE T PY+ N    + T+ +  +A
Sbjct: 237 PMPARSLMVLYGPARYKWEHAVLRQDVTSRRVCLAYRELTPPYLKNGQHQKETSEILRQA 296

Query: 353 KCFF 356
             F+
Sbjct: 297 SLFW 300

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383858126|ref|XP_003704553.1| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH4-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|345485379|ref|XP_001605092.2| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH4-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|66554392|ref|XP_623503.1| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH4-like [Apis mellifera] Back     alignment and taxonomy information
>gi|357617084|gb|EHJ70575.1| hypothetical protein KGM_10717 [Danaus plexippus] Back     alignment and taxonomy information
>gi|340727539|ref|XP_003402099.1| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH4-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350423117|ref|XP_003493390.1| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH4-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|307183142|gb|EFN70059.1| Alkylated DNA repair protein alkB-like protein 4 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|170051906|ref|XP_001861979.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167872935|gb|EDS36318.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|91087937|ref|XP_971924.1| PREDICTED: similar to CG4036 CG4036-PA [Tribolium castaneum] gi|270011936|gb|EFA08384.1| hypothetical protein TcasGA2_TC006028 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query356
FB|FBgn0032149310 CG4036 [Drosophila melanogaste 0.775 0.890 0.464 2e-63
UNIPROTKB|Q9NXW9302 ALKBH4 "Alpha-ketoglutarate-de 0.598 0.705 0.377 1.4e-46
UNIPROTKB|E2R1N2303 ALKBH4 "Uncharacterized protei 0.598 0.702 0.377 1.8e-46
UNIPROTKB|F1RKF4302 LOC100738333 "Uncharacterized 0.598 0.705 0.377 2.6e-45
ZFIN|ZDB-GENE-060526-275284 alkbh4 "alkB, alkylation repai 0.401 0.503 0.447 2.3e-44
UNIPROTKB|F1NFQ3287 ALKBH4 "Uncharacterized protei 0.654 0.811 0.375 1.9e-42
WB|WBGene00017304291 F09F7.7 [Caenorhabditis elegan 0.367 0.450 0.421 2.9e-41
MGI|MGI:1919291300 Alkbh4 "alkB, alkylation repai 0.662 0.786 0.362 5.5e-38
RGD|1308608301 Alkbh4 "alkB, alkylation repai 0.671 0.794 0.354 7e-38
UNIPROTKB|F1MV12303 ALKBH4 "Uncharacterized protei 0.668 0.785 0.342 3.9e-37
FB|FBgn0032149 CG4036 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 139/299 (46%), Positives = 186/299 (62%)

Query:    64 KSFDIGGVYIKEDFLTSQTKETYVYCPHCNKAWQGSDL-YAYQSHPNHS-GKSFDIGGVY 121
             + F I    ++E F   Q  E + YC  C+   +G D  +  + H NH   +   + G+ 
Sbjct:    26 QDFHIAKTSLREQF---QQLEAWSYCIQCDLLQRGWDTNHVQKDHENHKKDEGLPLPGIL 82

Query:   122 IKEDFLSEAETEDVMKQLDDLPWDKSQSGRRKQNFGPKCNFKKQKIKLGDFQGFPACTKF 181
             ++E+FLS  E   ++  LDDLPWD SQSGRRKQNFGPK NFKK+K++LG F GFP  T++
Sbjct:    83 VQEEFLSVDEGAQLIADLDDLPWDISQSGRRKQNFGPKTNFKKRKLRLGSFAGFPRTTEY 142

Query:   182 IQDRFHQEDVLSHFQTIEQCTLEYNSENGSSIDNHIDDCWIWGERIVTVNLIGDSVLTLT 241
             +Q RF    +L  FQTIEQC+LEY    G+SID H+DDCWIWGER+VTVN +GDSVLTLT
Sbjct:   143 VQRRFEDVPLLRGFQTIEQCSLEYEPSKGASIDPHVDDCWIWGERVVTVNCLGDSVLTLT 202

Query:   242 YYN-GDSNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSIVNETLSSVVIRIPMPA 300
              Y    S KYNL+    SY+ +     + ++ D        D +   T    V+RIPMP 
Sbjct:   203 PYEVQQSGKYNLDLVA-SYEDEL---LAPLLTD--------DQLA--TFEGKVLRIPMPN 248

Query:   301 RSLLVLWGEARYEWQHCVLRSDVIGRRVCIAYREFTAPYMNN---EATASVFEKAKCFF 356
              SL+VL+G ARY+++H VLR DV  RRVC+AYREFT  Y+N    +    V EK++ F+
Sbjct:   249 LSLIVLYGPARYQFEHSVLREDVQERRVCVAYREFTPMYINGVDIQKGDPVREKSQIFW 307
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
UNIPROTKB|Q9NXW9 ALKBH4 "Alpha-ketoglutarate-dependent dioxygenase alkB homolog 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R1N2 ALKBH4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RKF4 LOC100738333 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060526-275 alkbh4 "alkB, alkylation repair homolog 4 (E. coli)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NFQ3 ALKBH4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
WB|WBGene00017304 F09F7.7 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
MGI|MGI:1919291 Alkbh4 "alkB, alkylation repair homolog 4 (E. coli)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1308608 Alkbh4 "alkB, alkylation repair homolog 4 (E. coli)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MV12 ALKBH4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9NXW9ALKB4_HUMAN1, ., 1, 4, ., 1, 1, ., -0.30260.72750.8576yesN/A
Q9D8F1ALKB4_MOUSE1, ., 1, 4, ., 1, 1, ., -0.31470.73590.8733yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 356
KOG3959|consensus306 100.0
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 99.98
KOG3200|consensus224 99.96
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 99.94
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 99.89
KOG4176|consensus323 99.83
COG3145194 AlkB Alkylated DNA repair protein [DNA replication 99.8
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 98.14
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.04
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 97.9
KOG2731|consensus378 96.38
PLN00052310 prolyl 4-hydroxylase; Provisional 95.35
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 94.96
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 94.35
KOG1591|consensus289 90.85
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 88.24
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 85.01
PF1371937 zinc_ribbon_5: zinc-ribbon domain 84.61
PF10083158 DUF2321: Uncharacterized protein conserved in bact 80.88
>KOG3959|consensus Back     alignment and domain information 
Probab=100.00  E-value=9.5e-79  Score=560.31  Aligned_cols=293  Identities=39%  Similarity=0.655  Sum_probs=264.6

Q ss_pred             CC-CCCcccccceeeccccccccCcccccccccccccccccCCCCcccccCccccccCCCCCCCCccccccccccccccc
Q psy4937           1 MD-RSNFCGCKGVRTCIKCEQEFGYENKNIVEFTEETYIYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDFLT   79 (356)
Q Consensus         1 ~~-~~~~c~ckg~r~c~~ce~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (356)
                      |+ +.|+|||||+|||+.||+..+..+                                                  ...
T Consensus         1 m~~~~r~CGCKG~RtCl~CE~~~r~s~--------------------------------------------------~~~   30 (306)
T KOG3959|consen    1 MGSAERACGCKGARTCLLCETTERVSK--------------------------------------------------LRV   30 (306)
T ss_pred             CCccccccCCccceeeehhhhhhhccc--------------------------------------------------cch
Confidence            55 789999999999999998433332                                                  233


Q ss_pred             cccccceee-ccccccccccCccccccC-CCCCC-CCCCCCCCeEEeCCCCCHHHHHHHHHHhhcCCCCccccCcceecc
Q psy4937          80 SQTKETYVY-CPHCNKAWQGSDLYAYQS-HPNHS-GKSFDIGGVYIKEDFLSEAETEDVMKQLDDLPWDKSQSGRRKQNF  156 (356)
Q Consensus        80 ~~~~~~~~~-c~~c~~~~~g~~~~~~~~-~~~h~-~~~~~ipGl~~i~dFIS~~Ee~~Ll~~id~~pW~~sqsgRR~q~y  156 (356)
                      ++.++.++| |++|.....|||+...++ |.+|+ +.++++|||.+++||||++||++|++.||..||.+||||||||+|
T Consensus        31 ~e~~~a~~y~fIyc~i~~~gwd~~~e~~d~e~~~~d~~~p~pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdy  110 (306)
T KOG3959|consen   31 VEDKHANYYVFIYCHIQSSGWDIIDESTDCESVSTDGSIPIPGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDY  110 (306)
T ss_pred             hhccccceEEEEEechhhcccccccccccccccccCCccccCCeeehhhhhccchHhHHHHHhccCchhhhccccccccc
Confidence            456778888 999998888999987665 67766 578999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCcccCCCCCCCcHHHHHHHHHHhhcccCCCCCCcceeeeEecCCCCCCccCCCCCcccccCceEEEecCCce
Q psy4937         157 GPKCNFKKQKIKLGDFQGFPACTKFIQDRFHQEDVLSHFQTIEQCTLEYNSENGSSIDNHIDDCWIWGERIVTVNLIGDS  236 (356)
Q Consensus       157 G~~~nyk~~kl~~g~f~~lP~~l~~l~~Ri~~~~~l~~f~~~~q~~leY~pg~G~~I~pHvDd~~~~Ge~IaslSLgs~~  236 (356)
                      |||+|||++|++.+.|.|||.+...|++||...+++.+|+|++||+|||.|.+|++|+||+||.|+||+|+++++++++.
T Consensus       111 GPKvNFkk~Klkt~~F~G~P~~~~~v~rrm~~yp~l~gfqp~EqCnLeYep~kgsaIdpH~DD~WiWGeRlv~~n~l~d~  190 (306)
T KOG3959|consen  111 GPKVNFKKKKLKTDTFVGMPEYADMVLRRMSEYPVLKGFQPFEQCNLEYEPVKGSAIDPHQDDMWIWGERLVRSNRLFDF  190 (306)
T ss_pred             CCccchhhhhhccCcccCCchHHHHHHHHhhccchhhccCcHHHcCcccccccCCccCccccchhhhhhheeehhhccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCCC-CCCcCCCCCccccCCCCCCcccccccccccccccccccccccCCceEEEEecCCCeEEEecchhhcccc
Q psy4937         237 VLTLTYYNGD-SNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSIVNETLSSVVIRIPMPARSLLVLWGEARYEWQ  315 (356)
Q Consensus       237 vm~f~~~~~~-~~~~~l~~~~~~~~~~e~d~k~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~Lp~rSLLVMsG~ARy~W~  315 (356)
                      |+++.+++-. +++|||+++.++.++...+            .+.+.+++..++ +..+.|+||+||||||+|+|||+|+
T Consensus       191 vl~lc~~e~~~sg~~nL~~~~s~~~e~l~~------------~li~~s~~~l~~-~~~~~ipmP~rSLlvl~g~aRyqwk  257 (306)
T KOG3959|consen  191 VLKLCSKECLASGIINLNTNFSESNEFLSI------------NLINGSVMTLNK-SFLCYIPMPHRSLLVLAGEARYQWK  257 (306)
T ss_pred             HHHhhhhhhhccceeeeccCccccccccch------------hhcccchhhhcc-ceEEEeecCcceeEEeechhHhhHH
Confidence            9999976543 7899999999988765432            135556666666 8899999999999999999999999


Q ss_pred             cccccCCCCCCeEEEEecccCCCCCCh----hhhHHHHHHhhhcC
Q psy4937         316 HCVLRSDVIGRRVCIAYREFTAPYMNN----EATASVFEKAKCFF  356 (356)
Q Consensus       316 H~I~~~dvr~rRVSLTfR~l~~~~~~g----~~~~~~~~~a~~f~  356 (356)
                      |+|.+++|++||||+|||+++++|.+|    ++|++|++++.+||
T Consensus       258 H~vlr~hi~~RRvcvt~RE~~~~f~~Gg~~qe~G~el~r~~~if~  302 (306)
T KOG3959|consen  258 HGVLRHHIRGRRVCVTMREAAKDFAEGGELQEKGAELIRLGNIFV  302 (306)
T ss_pred             HHHHHHhhhhceeeeeHHhhhHhhccchhhhhcchHHHHhhhhhc
Confidence            999999999999999999999999998    78999999999998

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>KOG3200|consensus Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information
>KOG4176|consensus Back     alignment and domain information
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>KOG2731|consensus Back     alignment and domain information
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>KOG1591|consensus Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>PF13719 zinc_ribbon_5: zinc-ribbon domain Back     alignment and domain information
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 1e-18
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 1e-04
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345 Back     alignment and structure
 Score = 84.8 bits (209), Expect = 1e-18
 Identities = 37/210 (17%), Positives = 79/210 (37%), Gaps = 57/210 (27%)

Query: 119 GVYIKEDFLSEAETEDVMKQLDDLPWD------KSQSGRRKQNFGPKCNFKKQKIKLGDF 172
           G+ + E+ +S  E + +++ +D           KS   RR ++FG + +++   +     
Sbjct: 112 GLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEFHYENNNVDKDKP 171

Query: 173 --QGFPACTKFIQDRFHQEDVLSHFQTIEQCTLEYNSENGSSIDNHIDDCWIWGERIVTV 230
              G P   +   +++ ++  +   +  +    +Y  E G  I  HID    + + IV++
Sbjct: 172 LSGGLPDICESFLEKWLRKGYI-KHKPDQMTINQY--EPGQGIPAHIDTHSAFEDEIVSL 228

Query: 231 NLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSIVNETLS 290
           +L  + V+   + +G +                                           
Sbjct: 229 SLGSEIVMDFKHPDGIA------------------------------------------- 245

Query: 291 SVVIRIPMPARSLLVLWGEARYEWQHCVLR 320
              + + +P RSLLV+ GE+RY W H +  
Sbjct: 246 ---VPVMLPRRSLLVMTGESRYLWTHGITC 272
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Length = 238 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Length = 204 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query356
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 100.0
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 100.0
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 99.97
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 99.96
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 97.81
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 97.64
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 97.61
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 96.67
3lfm_A 495 Protein FTO; FAT MASS and obesity associated (FTO) 95.54
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 92.48
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 90.8
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 88.9
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 86.95
3gja_A319 CYTC3; halogenase, beta barrel, biosynthetic prote 85.01
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
Probab=100.00  E-value=2.3e-35  Score=290.03  Aligned_cols=175  Identities=22%  Similarity=0.422  Sum_probs=130.0

Q ss_pred             CCCCCCeEEeCCCCCHHHHHHHHHHhhcCCCC------ccccCcceeccCCccccCCCcccCC-CC-CCCcHHHHHHHHH
Q psy4937         114 SFDIGGVYIKEDFLSEAETEDVMKQLDDLPWD------KSQSGRRKQNFGPKCNFKKQKIKLG-DF-QGFPACTKFIQDR  185 (356)
Q Consensus       114 ~~~ipGl~~i~dFIS~~Ee~~Ll~~id~~pW~------~sqsgRR~q~yG~~~nyk~~kl~~g-~f-~~lP~~l~~l~~R  185 (356)
                      ...+|||+|+|||||++||+.|++.|+-.++.      ...++||+||||+.|+|++..+..+ ++ .+||+++..|++|
T Consensus       107 ~~lp~Gl~~~p~fis~~Ee~~Ll~~i~w~~~~~~~~~~~~l~~Rr~~~yG~~Y~Ys~~~~~~~~p~p~~~P~~L~~l~~r  186 (345)
T 3tht_A          107 QALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEFHYENNNVDKDKPLSGGLPDICESFLEK  186 (345)
T ss_dssp             CSCCTTEEEETTCSCHHHHHHHHTTCC----------------CEEECCC------------------CCCHHHHHHHHH
T ss_pred             ccCCCceEEEcCcCCHHHHHHHHHhcccCCccccccCcccccCceEEEECCcccccccccccCCCCCcCcCHHHHHHHHH
Confidence            35567999999999999999998877632221      1245899999999999998887644 22 5799999999999


Q ss_pred             HhhcccCCCCCCcceeee-EecCCCCCCccCCCCCcccccCceEEEecCCceEEEEeecCCCCCCcCCCCCccccCCCCC
Q psy4937         186 FHQEDVLSHFQTIEQCTL-EYNSENGSSIDNHIDDCWIWGERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYP  264 (356)
Q Consensus       186 i~~~~~l~~f~~~~q~~l-eY~pg~G~~I~pHvDd~~~~Ge~IaslSLgs~~vm~f~~~~~~~~~~~l~~~~~~~~~~e~  264 (356)
                      +.+.+.. + ..+|+|++ +|+||.  +|+||+|+++.||+.|++||||++++|.|++..                    
T Consensus       187 ~~~~~~~-~-~~~n~~lvN~Y~~G~--~I~~H~D~~~~~~~~I~slSLG~~~~f~f~~~~--------------------  242 (345)
T 3tht_A          187 WLRKGYI-K-HKPDQMTINQYEPGQ--GIPAHIDTHSAFEDEIVSLSLGSEIVMDFKHPD--------------------  242 (345)
T ss_dssp             HHHHTSC-S-SCCSEEEEEEECTTC--CEEEECCCTTTBCSCEEEEEESSCEEEEEECTT--------------------
T ss_pred             HHhcccC-C-CCCCEEEEEEecCCC--CEeeccCCchhcCCeEEEEECCCceeEEEccCC--------------------
Confidence            9864432 3 35788887 999965  599999999999999999999999999999741                    


Q ss_pred             CcccccccccccccccccccccccCCceEEEEecCCCeEEEecchhhcccccccccCC--C-------------------
Q psy4937         265 DQKSTIVNDLSLNEKSTDSIVNETLSSVVIRIPMPARSLLVLWGEARYEWQHCVLRSD--V-------------------  323 (356)
Q Consensus       265 d~k~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~d--v-------------------  323 (356)
                                                +..++|.|++||||||+|++|+.|+|+|++++  .                   
T Consensus       243 --------------------------~~~~~l~L~~gsLlvM~G~~r~~w~H~I~~~~~d~~~~~~~~~~~~~~~~~~~~  296 (345)
T 3tht_A          243 --------------------------GIAVPVMLPRRSLLVMTGESRYLWTHGITCRKFDTVQASESLKSGIITSDVGDL  296 (345)
T ss_dssp             --------------------------SCEEEEEECTTEEEEECTHHHHTSEEEECCCSEEEEESGGGSSCEECCSSSSCE
T ss_pred             --------------------------CceEEEEcCCCcEEEEChHHhhceEccCCcccCCccCcccccccccccccCCCc
Confidence                                      34688999999999999999999999999872  1                   


Q ss_pred             ----CCCeEEEEecccCCC
Q psy4937         324 ----IGRRVCIAYREFTAP  338 (356)
Q Consensus       324 ----r~rRVSLTfR~l~~~  338 (356)
                          |++|||||||++.+.
T Consensus       297 ~~~~r~~RiSlT~R~v~~~  315 (345)
T 3tht_A          297 TLSKRGLRTSFTFRKVRQT  315 (345)
T ss_dssp             EEEECCCEEEEEEECBCSS
T ss_pred             eeccCCCEEEEEEEecCCC
Confidence                788999999999764
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens} Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 356
d2iuwa1210 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s 2e-13
d2fdia1200 b.82.2.10 (A:15-214) Alkylated DNA repair protein 2e-04
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (161), Expect = 2e-13
 Identities = 34/228 (14%), Positives = 73/228 (32%), Gaps = 50/228 (21%)

Query: 117 IGGVYIKEDFLSEAETEDVMKQL-DDLPW--------DKSQSGRRKQNFGPKCNFKKQKI 167
           +  V +   F+   E + +++QL  D+PW        D +    R   +  +  +   +I
Sbjct: 18  VSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGELPYTYSRI 77

Query: 168 KLGDFQGFPACTKFIQDRFHQEDVLSHFQTIEQCTLEYNSENG-SSIDNHIDDCWIWGER 226
            +     +    + +++R  +     +        L     N   S+D H DD    G  
Sbjct: 78  TMEPNPHWHPVLRTLKNRIEE-----NTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRC 132

Query: 227 IVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSIVN 286
            +  +L                  +  +                     + +K       
Sbjct: 133 PIIASL------------------SFGATR----------------TFEMRKKPPPEENG 158

Query: 287 ETLSSVVIRIPMPARSLLVLWGEARYEWQHCVL-RSDVIGRRVCIAYR 333
           +      ++IP+   +LL++ G  + +WQH V         RV + +R
Sbjct: 159 DYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFR 206
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query356
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 100.0
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 99.95
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 95.16
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 94.76
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-35  Score=263.82  Aligned_cols=184  Identities=19%  Similarity=0.310  Sum_probs=138.5

Q ss_pred             CCCCCCCCeEEeCCCCCHHHHHHHHHHh-hcCCCCcccc---------CcceeccCCccccCCCcccCCCCCCCcHHHHH
Q psy4937         112 GKSFDIGGVYIKEDFLSEAETEDVMKQL-DDLPWDKSQS---------GRRKQNFGPKCNFKKQKIKLGDFQGFPACTKF  181 (356)
Q Consensus       112 ~~~~~ipGl~~i~dFIS~~Ee~~Ll~~i-d~~pW~~sqs---------gRR~q~yG~~~nyk~~kl~~g~f~~lP~~l~~  181 (356)
                      ..+..++||.|+|||||++|++.|++.| ++.+|.....         .|.+.+|| ...|++.........+||+++..
T Consensus        13 ~~p~g~~~l~y~p~fLs~~e~~~Ll~~L~~e~~w~~~~~~~~g~~~~~pR~~~~~~-d~~y~y~~~~~~~~~~~~~~l~~   91 (210)
T d2iuwa1          13 LSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYG-ELPYTYSRITMEPNPHWHPVLRT   91 (210)
T ss_dssp             CCSSSCEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEESSSCEEECSSEEEEEE-CCCTTSCHHHHCCBSSCCHHHHH
T ss_pred             cCCCCcceEEEECCcCCHHHHHHHHHHHHhhCCccccceeccCcccceeeeeEEec-CcCccccccccccCCCCcHHHHH
Confidence            4556788999999999999999999998 4579985322         24444444 44444444433345789999999


Q ss_pred             HHHHHhhcccCCCCCCcceeee-EecCCCCCCccCCCCCccccc--CceEEEecCCceEEEEeecCCCCCCcCCCCCccc
Q psy4937         182 IQDRFHQEDVLSHFQTIEQCTL-EYNSENGSSIDNHIDDCWIWG--ERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFS  258 (356)
Q Consensus       182 l~~Ri~~~~~l~~f~~~~q~~l-eY~pg~G~~I~pHvDd~~~~G--e~IaslSLgs~~vm~f~~~~~~~~~~~l~~~~~~  258 (356)
                      |.+++.+....    .+++|++ .|..+ |++|+||+|++..||  +.||+||||++++|.|++.....           
T Consensus        92 l~~~~~~~~~~----~~~~~~ln~Y~~~-~~~I~~H~D~~~~~~~~~~I~slSlG~~~~~~~r~~~~~~-----------  155 (210)
T d2iuwa1          92 LKNRIEENTGH----TFNSLLCNLYRNE-KDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPE-----------  155 (210)
T ss_dssp             HHHHHHHHHSC----CCCEEEEEEECST-TCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC-------------
T ss_pred             HHHhhhhhcCc----cchhhhhhccccC-CCccccCcCCchhcccCCceeEEeeCCceEEEEccccccc-----------
Confidence            99999987542    3455555 55443 356999999998886  57999999999999999864210           


Q ss_pred             cCCCCCCcccccccccccccccccccccccCCceEEEEecCCCeEEEecchhhcccccccccC-CCCCCeEEEEecccCC
Q psy4937         259 YQKKYPDQKSTIVNDLSLNEKSTDSIVNETLSSVVIRIPMPARSLLVLWGEARYEWQHCVLRS-DVIGRRVCIAYREFTA  337 (356)
Q Consensus       259 ~~~~e~d~k~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~-dvr~rRVSLTfR~l~~  337 (356)
                                 .             ...... ...++|+|++||||||.|++|++|+|+|+++ .++++|||||||++.|
T Consensus       156 -----------~-------------~~~~~~-~~~~~i~L~~gsl~vm~g~~~~~~~H~Ip~~~~~~~~RiSlTfR~v~p  210 (210)
T d2iuwa1         156 -----------E-------------NGDYTY-VERVKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYP  210 (210)
T ss_dssp             ------------------------------C-CCEEEEEECTTCEEEEEETHHHHEEEEECCCSSCCCCEEEEEEECCCC
T ss_pred             -----------c-------------CCccCC-CceEEEEcCCCCEEEeCchhhCceEccCCccCCCCCCeEEEEEEeecC
Confidence                       0             000002 5679999999999999999999999999987 5789999999999986
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure