Psyllid ID: psy4941

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLSGRLARAENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETMEGES
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
msrldsklTLLRSVQVDlneesrgndRLGEALATRLasearpaetAKYKLHVQEVGHITSLLLGLSGRLARAENALIGlredhcdrksLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKYLsseefadynHFINMKAKLLVDAREISDKIQLGEEQLAALQETMEGES
Flexible Loop (DISEMBL)
msrldskltllrsvqvdlneesrgndrlGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLSGRLARAENALIglredhcdrksleEKRDKLASQLEEAkelkenidrrstnVATLLRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETMEGES
Low Complexity Region (SEG)
MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITslllglsgrlaraENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETMEGES
Disordered region (IsUnstruct)
*********************************************AKYKLHVQEVGHITSLLLGLSGRLARAENALIGLR***********************************NVATLLRKYLSSEEFADYNHFINMKAKLLVDAREISDKI******************
Disordered Region (DISOPRED)
***********RSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLSGRLARA***********************************ENIDRRSTNVATLLRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAA**E******
Disordered Region (DISEMBL)
MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLSGRLARAENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETMEGES
Disordered Region (DISPRO)
MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLSGRLARAENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETM****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLSGRLARAENALIGLREDHCDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYLSSEEFADYNHFINMKAKLLVDxxxxxxxxxxxxxxxxxxxxxMEGES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
Q27IV2	1788	Protein Shroom3 OS=Xenopu	N/A	N/A	0.994	0.095	0.439	6e-33
A1Z9P3	1576	Protein Shroom OS=Drosoph	no	N/A	0.959	0.104	0.458	7e-30
A2ALU4	1481	Protein Shroom2 OS=Mus mu	yes	N/A	0.959	0.111	0.437	3e-29
Q7TP36	1423	Protein Shroom2 OS=Rattus	no	N/A	0.959	0.115	0.437	3e-29
Q9QXN0	1986	Protein Shroom3 OS=Mus mu	no	N/A	0.843	0.073	0.469	4e-29
Q8TF72	1996	Protein Shroom3 OS=Homo s	yes	N/A	0.982	0.084	0.426	8e-29
Q13796	1616	Protein Shroom2 OS=Homo s	no	N/A	0.959	0.102	0.437	4e-28
Q09JY9	1726	Protein Shroom2 OS=Xenopu	no	N/A	0.959	0.095	0.431	5e-27
Q9ULL8	1493	Protein Shroom4 OS=Homo s	no	N/A	0.941	0.108	0.423	5e-27
Q1W617	1475	Protein Shroom4 OS=Mus mu	no	N/A	0.941	0.109	0.404	1e-25

>sp|Q27IV2|SHRM3_XENLA Protein Shroom3 OS=Xenopus laevis GN=shroom3 PE=2 SV=1

 Score =  140 bits (352), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 76/173 (43%), Positives = 113/173 (65%), Gaps = 2/173 (1%)

Query: 1    MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITS 60
            +S L  KL +L+  +  L ++ + N+ LGE + T++ +  +P E  KYK+ + ++  + +
Sbjct: 1586 ISSLTCKLEVLKDAKESLIDDIKLNNSLGEEVETQIETLCKPNEFDKYKMFIGDLDKVVN 1645

Query: 61   LLLGLSGRLARAENALIGLREDHC--DRKSLEEKRDKLASQLEEAKELKENIDRRSTNVA 118
            LLL LSGRLAR ENAL  L ED    +RK+  EK+ +L  Q E+A+ELKEN+DRR   V 
Sbjct: 1646 LLLSLSGRLARVENALSSLGEDASAEERKTWNEKKKQLCGQHEDARELKENLDRREKLVM 1705

Query: 119  TLLRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETMEGE 171
              L  YL+ EEFA Y HF+ MK+ LL++ RE+ DKI+LG+EQL  L E++  +
Sbjct: 1706 DFLGNYLTGEEFAHYQHFVKMKSALLIEQRELDDKIKLGQEQLRCLTESLPSD 1758

Controls cell shape changes in the neuroepithelium during neural tube closure. Induces apical constriction in epithelial cells by promoting the apical accumulation of F-actin and myosin II, and probably by bundling stress fibers. Induces apicobasal cell elongation by redistributing gamma-tubulin and directing the assembly of robust apicobasal microtubule arrays.
Xenopus laevis (taxid: 8355)

>sp|A1Z9P3|SHRM_DROME Protein Shroom OS=Drosophila melanogaster GN=Shroom PE=1 SV=2

 Score =  129 bits (325), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 118/168 (70%), Gaps = 3/168 (1%)

Query: 1    MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITS 60
            +  L+ K+  L+  Q  ++EE   NDRLG+ L  +LA + RP+E +K++ HV  VG+ITS
Sbjct: 1407 IKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITS 1466

Query: 61   LLLGLSGRLARAENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATL 120
            LLL LS RLA+ E++L   +++   R +LE KRD L  Q+EEA+ LK +I+RR  ++A L
Sbjct: 1467 LLLSLSERLAQTESSLETRQQE---RGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGL 1523

Query: 121  LRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETM 168
            L K LS++  ADY++FINMKAKL+ DAR+++ +I+  EEQL++L + +
Sbjct: 1524 LAKNLSADMCADYDYFINMKAKLIADARDLAVRIKGSEEQLSSLSDAL 1571

May be involved in the assembly of microtubule arrays during cell elongation.

Drosophila melanogaster (taxid: 7227)

>sp|A2ALU4|SHRM2_MOUSE Protein Shroom2 OS=Mus musculus GN=Shroom2 PE=1 SV=1

 Score =  127 bits (320), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 107/167 (64%), Gaps = 2/167 (1%)

Query: 7    KLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLS 66
            KL +LR  +  L E+ + N+ LG+ +   +    +P E  K+++ + ++  + +LLL LS
Sbjct: 1312 KLQVLREARESLLEDIQANNALGDEVEAIVKDVCKPNEFDKFRMFIGDLDKVVNLLLSLS 1371

Query: 67   GRLARAENALIGLREDHC--DRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKY 124
            GRLAR ENAL  L ++    DR+SL EK+  L  Q E+AKELKEN+DRR   V  +L  Y
Sbjct: 1372 GRLARVENALNNLDDNPSPGDRQSLLEKQRVLTQQHEDAKELKENLDRRERIVFDILATY 1431

Query: 125  LSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETMEGE 171
            LS E  ADY HF+ MK+ L+++ RE+ DKI LGEEQL  L ++++ E
Sbjct: 1432 LSEENLADYEHFVKMKSALIIEQRELEDKIHLGEEQLKCLFDSLQPE 1478

May be involved in endothelial cell morphology changes during cell spreading. In the retinal pigment epithelium, may regulate the biogenesis of melanosomes and promote their association with the apical cell surface by inducing gamma-tubulin redistribution.

Mus musculus (taxid: 10090)

>sp|Q7TP36|SHRM2_RAT Protein Shroom2 OS=Rattus norvegicus GN=Shroom2 PE=2 SV=1

 Score =  127 bits (319), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 106/167 (63%), Gaps = 2/167 (1%)

Query: 7    KLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLS 66
            KL +LR  +  L E+ + N+ LG+ +   +    +P E  K+++ + ++  + +LLL LS
Sbjct: 1254 KLQVLREARESLLEDIQANNALGDEVEAIVKDVCKPNEFDKFRMFIGDLDKVVNLLLSLS 1313

Query: 67   GRLARAENALIGLREDHC--DRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKY 124
            GRLAR ENAL  L +     DR+SL EK+  L  Q E+AKELKEN+DRR   V  +L  Y
Sbjct: 1314 GRLARVENALNNLDDSPSPGDRQSLLEKQRVLTQQHEDAKELKENLDRRERIVFDILATY 1373

Query: 125  LSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETMEGE 171
            LS E  ADY HF+ MK+ L+++ RE+ DKI LGEEQL  L ++++ E
Sbjct: 1374 LSEENLADYEHFVKMKSALIIEQRELEDKIHLGEEQLKCLFDSLQPE 1420

May be involved in endothelial cell morphology changes during cell spreading. In the retinal pigment epithelium, may regulate the biogenesis of melanosomes and promote their association with the apical cell surface by inducing gamma-tubulin redistribution.

Rattus norvegicus (taxid: 10116)

>sp|Q9QXN0|SHRM3_MOUSE Protein Shroom3 OS=Mus musculus GN=Shroom3 PE=1 SV=2

 Score =  127 bits (318), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 98/147 (66%), Gaps = 2/147 (1%)

Query: 25   NDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLSGRLARAENALIGLREDHC 84
            N+ LGE +   ++   +P E  KYK+ + ++  + +LLL LSGRLAR EN L GL ED  
Sbjct: 1801 NNALGEEVEALISELCKPNEFDKYKMFIGDLDKVVNLLLSLSGRLARVENVLRGLGEDAS 1860

Query: 85   --DRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKYLSSEEFADYNHFINMKAK 142
              +R SL EKR  LA Q E+A+ELKEN+DRR   V  +L  YLS+E+  DY HF+ MK+ 
Sbjct: 1861 KEERSSLNEKRKVLAGQHEDARELKENLDRRERVVLDILANYLSAEQLQDYQHFVKMKST 1920

Query: 143  LLVDAREISDKIQLGEEQLAALQETME 169
            LL++ R++ DKI+LG+EQ+  L E++ 
Sbjct: 1921 LLIEQRKLDDKIKLGQEQVRCLLESLP 1947

Controls cell shape changes in the neuroepithelium during neural tube closure. Induces apical constriction in epithelial cells by promoting the apical accumulation of F-actin and myosin II, and probably by bundling stress fibers. Induces apicobasal cell elongation by redistributing gamma-tubulin and directing the assembly of robust apicobasal microtubule arrays.

Mus musculus (taxid: 10090)

>sp|Q8TF72|SHRM3_HUMAN Protein Shroom3 OS=Homo sapiens GN=SHROOM3 PE=1 SV=2

 Score =  126 bits (316), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 107/171 (62%), Gaps = 2/171 (1%)

Query: 1    MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITS 60
            +  L  KL  L+  +  L  + + N+ LGE +   ++   +P E  KY++ + ++  + +
Sbjct: 1787 IGSLTHKLETLQEAKGSLLTDIKLNNALGEEVEALISELCKPNEFDKYRMFIGDLDKVVN 1846

Query: 61   LLLGLSGRLARAENALIGLREDHCD--RKSLEEKRDKLASQLEEAKELKENIDRRSTNVA 118
            LLL LSGRLAR EN L GL ED  +  R SL EKR  LA Q E+A+ELKEN+DRR   V 
Sbjct: 1847 LLLSLSGRLARVENVLSGLGEDASNEERSSLYEKRKILAGQHEDARELKENLDRRERVVL 1906

Query: 119  TLLRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETME 169
             +L  YLS E+  DY HF+ MK+ LL++ R++ DKI+LG+EQ+  L E++ 
Sbjct: 1907 GILANYLSEEQLQDYQHFVKMKSTLLIEQRKLDDKIKLGQEQVKCLLESLP 1957

Controls cell shape changes in the neuroepithelium during neural tube closure. Induces apical constriction in epithelial cells by promoting the apical accumulation of F-actin and myosin II, and probably by bundling stress fibers. Induces apicobasal cell elongation by redistributing gamma-tubulin and directing the assembly of robust apicobasal microtubule arrays.

Homo sapiens (taxid: 9606)

>sp|Q13796|SHRM2_HUMAN Protein Shroom2 OS=Homo sapiens GN=SHROOM2 PE=1 SV=1

 Score =  124 bits (310), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 7    KLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLS 66
            KL +LR  +  L E+ + N  LG  +   +    +P+E  K+++ + ++  + +LLL LS
Sbjct: 1447 KLQVLREARESLLEDVQANTVLGAEVEAIVKGVCKPSEFDKFRMFIGDLDKVVNLLLSLS 1506

Query: 67   GRLARAENALIGLRE--DHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKY 124
            GRLAR ENAL  L +     DR+SL EK+  L  Q E+AKELKEN+DRR   V  +L  Y
Sbjct: 1507 GRLARVENALNNLDDGASPGDRQSLLEKQRVLIQQHEDAKELKENLDRRERIVFDILANY 1566

Query: 125  LSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETMEGE 171
            LS E  ADY HF+ MK+ L+++ RE+ DKI LGEEQL  L ++++ E
Sbjct: 1567 LSEESLADYEHFVKMKSALIIEQRELEDKIHLGEEQLKCLLDSLQPE 1613

May be involved in endothelial cell morphology changes during cell spreading. In the retinal pigment epithelium, may regulate the biogenesis of melanosomes and promote their association with the apical cell surface by inducing gamma-tubulin redistribution.

Homo sapiens (taxid: 9606)

>sp|Q09JY9|SHRM2_XENTR Protein Shroom2 OS=Xenopus tropicalis GN=shroom2 PE=2 SV=1

 Score =  120 bits (301), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 4    LDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLL 63
            +  KL +LR  +  L E+ + N+ LGE +   +    +P E  K+++ + ++  I +LLL
Sbjct: 1554 ISKKLQVLRDAKETLLEDVQCNNALGEEVEIIVKEVCKPNEFDKFRMFIGDLEKIVNLLL 1613

Query: 64   GLSGRLARAENALIGLREDHC--DRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLL 121
             LSGRLAR ENAL  L E     +RK+L EKR  L  Q E+AKELKEN+DRR   V  +L
Sbjct: 1614 SLSGRLARVENALNNLDETVSPEERKTLLEKRKLLTRQHEDAKELKENLDRRERTVYEIL 1673

Query: 122  RKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETM 168
              YL+ E  ADY HF+ MK+ L+++ RE+ DKI+L E QL  L +++
Sbjct: 1674 ANYLNEENLADYEHFVKMKSALILEQRELEDKIKLRESQLKCLTDSL 1720

May be involved in endothelial cell morphology changes during cell spreading. Required for eye pigmentation. In the retinal pigment epithelium, regulates the biogenesis of melanosomes and promotes their association with the apical cell surface by inducing gamma-tubulin redistribution.

Xenopus tropicalis (taxid: 8364)

>sp|Q9ULL8|SHRM4_HUMAN Protein Shroom4 OS=Homo sapiens GN=SHROOM4 PE=1 SV=3

 Score =  120 bits (301), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 104/163 (63%), Gaps = 1/163 (0%)

Query: 7    KLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLS 66
            KL++LR  Q  L E+   N  LGE +   L +  +  E  KY L V ++  + +LLL LS
Sbjct: 1324 KLSVLREAQRGLLEDINANSALGEEVEANLKAVCKSNEFEKYHLFVGDLDKVVNLLLSLS 1383

Query: 67   GRLARAENALIGL-REDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKYL 125
            GRLAR ENAL  +  E + ++  L EK+ +L  QL +AKELKE++DRR   V  ++ +YL
Sbjct: 1384 GRLARVENALNSIDSEANQEKLVLIEKKQQLTGQLADAKELKEHVDRREKLVFGMVSRYL 1443

Query: 126  SSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETM 168
              ++  DY HF+ MK+ L+++ RE+ +KI+LGEEQL  L+E++
Sbjct: 1444 PQDQLQDYQHFVKMKSALIIEQRELEEKIKLGEEQLKCLRESL 1486

Probable regulator of cytoskeletal architecture that plays an important role in development. May regulate cellular and cytoskeletal architecture by modulating the spatial distribution of myosin II.

Homo sapiens (taxid: 9606)

>sp|Q1W617|SHRM4_MOUSE Protein Shroom4 OS=Mus musculus GN=Shroom4 PE=1 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 104/163 (63%), Gaps = 1/163 (0%)

Query: 7    KLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLS 66
            KL++LR  Q  L ++   N  LGE +   L +  +  E  KY L + ++  + +LLL LS
Sbjct: 1306 KLSVLREAQRGLLDDINANAALGEEVEANLKAVCKSNEFEKYHLFIGDLDKVVNLLLSLS 1365

Query: 67   GRLARAENALIGL-REDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKYL 125
            GRLAR ENAL  +  E + ++  L EK+ +L +QL +AKELKE++D R   V  ++ +YL
Sbjct: 1366 GRLARVENALNSIDSESNQEKLVLIEKKQQLTNQLADAKELKEHVDGREKLVFGMVSRYL 1425

Query: 126  SSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETM 168
              ++  DY HF+ MK+ L+++ RE+ +KI+LGEEQL  L+E++
Sbjct: 1426 PQDQLQDYQHFVKMKSALIIEQRELEEKIKLGEEQLKCLKESL 1468

Probable regulator of cytoskeletal architecture that plays an important role in development. May regulate cellular and cytoskeletal architecture by modulating the spatial distribution of myosin II.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
328707949	1497	PREDICTED: hypothetical protein LOC10016	0.982	0.112	0.650	4e-51
328707947	1667	PREDICTED: hypothetical protein LOC10016	0.982	0.101	0.650	5e-51
350404242	2029	PREDICTED: hypothetical protein LOC10074	0.982	0.083	0.668	3e-50
383860379	2013	PREDICTED: uncharacterized protein LOC10	0.982	0.083	0.662	4e-50
328790162	2126	PREDICTED: hypothetical protein LOC40889	0.982	0.079	0.656	6e-49
345492496	2029	PREDICTED: hypothetical protein LOC10011	0.982	0.083	0.662	7e-49
332017752	765	Protein Shroom2 [Acromyrmex echinatior]	0.982	0.220	0.644	1e-47
307210425	647	Protein Shroom [Harpegnathos saltator]	0.982	0.261	0.639	1e-47
189235905	640	PREDICTED: similar to Protein Shroom [Tr	0.976	0.262	0.630	3e-47
270004569	652	hypothetical protein TcasGA2_TC003931 [T	0.976	0.257	0.630	4e-47

>gi|328707949|ref|XP_003243547.1| PREDICTED: hypothetical protein LOC100166532 isoform 2 [Acyrthosiphon pisum]

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 139/169 (82%)

Query: 1    MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITS 60
            +SRLD KL +LR+ Q+ L EE+  N+ LG ++A R+ S A+P E  K+K HVQEVGHITS
Sbjct: 1328 VSRLDRKLKVLRNEQIALAEEAALNETLGVSVAERVKSVAKPQEANKFKTHVQEVGHITS 1387

Query: 61   LLLGLSGRLARAENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATL 120
            LLL LSGRLARAENAL+ L  DH ++K+LEEK+ KL  QLEEAKELKENIDRR   V+T+
Sbjct: 1388 LLLSLSGRLARAENALLDLDADHSEKKALEEKKCKLTGQLEEAKELKENIDRRGDFVSTI 1447

Query: 121  LRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETME 169
            L +YL+++E++DY+HFI MKAKLL+DAREI+DKIQLGEEQL AL+ET+E
Sbjct: 1448 LCRYLTADEYSDYDHFIAMKAKLLIDAREIADKIQLGEEQLRALKETLE 1496

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328707947|ref|XP_001947933.2| PREDICTED: hypothetical protein LOC100166532 isoform 1 [Acyrthosiphon pisum]

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 139/169 (82%)

Query: 1    MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITS 60
            +SRLD KL +LR+ Q+ L EE+  N+ LG ++A R+ S A+P E  K+K HVQEVGHITS
Sbjct: 1498 VSRLDRKLKVLRNEQIALAEEAALNETLGVSVAERVKSVAKPQEANKFKTHVQEVGHITS 1557

Query: 61   LLLGLSGRLARAENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATL 120
            LLL LSGRLARAENAL+ L  DH ++K+LEEK+ KL  QLEEAKELKENIDRR   V+T+
Sbjct: 1558 LLLSLSGRLARAENALLDLDADHSEKKALEEKKCKLTGQLEEAKELKENIDRRGDFVSTI 1617

Query: 121  LRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETME 169
            L +YL+++E++DY+HFI MKAKLL+DAREI+DKIQLGEEQL AL+ET+E
Sbjct: 1618 LCRYLTADEYSDYDHFIAMKAKLLIDAREIADKIQLGEEQLRALKETLE 1666

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404242|ref|XP_003487045.1| PREDICTED: hypothetical protein LOC100747839 [Bombus impatiens]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 113/169 (66%), Positives = 135/169 (79%)

Query: 1    MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITS 60
            M RLD KL +LR+ Q  + EE   N+ LG  +ATR+ + ARPAE +KY+LHV+EVG ITS
Sbjct: 1861 MMRLDKKLVVLRAEQEAVREEGDVNEALGARVATRITAVARPAEASKYRLHVEEVGKITS 1920

Query: 61   LLLGLSGRLARAENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATL 120
            LLLGLSGRLARAENAL G+  DH +RK LE KRDKL  QLEEAK LK NID+RS NV+T+
Sbjct: 1921 LLLGLSGRLARAENALYGMPADHAERKILESKRDKLMDQLEEAKILKSNIDKRSVNVSTI 1980

Query: 121  LRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETME 169
            L KYL+ EEFADY HFINMKAKL+VD REI DK++LGEEQLAAL+E ++
Sbjct: 1981 LSKYLNEEEFADYQHFINMKAKLIVDGREIQDKVKLGEEQLAALREAID 2029

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860379|ref|XP_003705668.1| PREDICTED: uncharacterized protein LOC100881505 [Megachile rotundata]

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 112/169 (66%), Positives = 136/169 (80%)

Query: 1    MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITS 60
            M RLD KL +LR+ Q  + EE   N+ LG  ++TR+++ ARPAE +KY+LHV+EVG ITS
Sbjct: 1845 MMRLDKKLVVLRAEQEAVREEGEVNEALGARVSTRISAVARPAEASKYRLHVEEVGKITS 1904

Query: 61   LLLGLSGRLARAENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATL 120
            LLLGLSGRLARAENAL G+  DH +RK LE KRDKL  QLEEAK LK NID+RS NV+T+
Sbjct: 1905 LLLGLSGRLARAENALYGMPADHAERKILESKRDKLMDQLEEAKILKSNIDKRSVNVSTI 1964

Query: 121  LRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETME 169
            L KYL+ EEFADY HFINMKAKL+VD REI DK++LGEEQLAAL+E ++
Sbjct: 1965 LSKYLNEEEFADYQHFINMKAKLIVDGREIQDKVKLGEEQLAALREAID 2013

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790162|ref|XP_392427.4| PREDICTED: hypothetical protein LOC408897 [Apis mellifera]

 Score =  198 bits (504), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 111/169 (65%), Positives = 135/169 (79%)

Query: 1    MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITS 60
            M  LD KL +LR+ Q  + EE   N+ LG  +ATR+++ ARPAE +KY+LHV+EVG ITS
Sbjct: 1958 MMSLDKKLVVLRAEQEAVREEGEVNEALGARVATRISAVARPAEASKYRLHVEEVGKITS 2017

Query: 61   LLLGLSGRLARAENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATL 120
            LLLGLSGRLARAENAL G+  +H +RK LE KRDKL  QLEEAK LK NID+RS NV+T+
Sbjct: 2018 LLLGLSGRLARAENALYGMPAEHAERKILESKRDKLMDQLEEAKILKSNIDKRSVNVSTI 2077

Query: 121  LRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETME 169
            L KYL+ EEFADY HFINMKAKL+VD REI DK++LGEEQLAAL+E ++
Sbjct: 2078 LSKYLNEEEFADYQHFINMKAKLIVDGREIQDKVKLGEEQLAALREAID 2126

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345492496|ref|XP_001600161.2| PREDICTED: hypothetical protein LOC100115438 [Nasonia vitripennis]

 Score =  198 bits (503), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 112/169 (66%), Positives = 133/169 (78%)

Query: 1    MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITS 60
            M RLD KL +LR+ Q  + EE   N+ LG  +  R+A+ A+PAE +KY+LHV+EVG ITS
Sbjct: 1860 MIRLDKKLVVLRAEQEAVREEGEVNEALGSRVQARIAALAKPAEASKYRLHVEEVGKITS 1919

Query: 61   LLLGLSGRLARAENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATL 120
            LLLGLSGRLARAENAL G+  DH +RK LE KRDKL  QLEEAK LK NIDRRS NV+ +
Sbjct: 1920 LLLGLSGRLARAENALYGMPADHPERKILESKRDKLMDQLEEAKILKGNIDRRSVNVSAI 1979

Query: 121  LRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETME 169
            L KYLS EEFADY HFINMKAKL+VD REI DK++LGEEQLAAL+E ++
Sbjct: 1980 LSKYLSDEEFADYQHFINMKAKLIVDGREIQDKVKLGEEQLAALKEAID 2028

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017752|gb|EGI58420.1| Protein Shroom2 [Acromyrmex echinatior]

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/169 (64%), Positives = 133/169 (78%)

Query: 1   MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITS 60
           M RLD KL +LR+ Q  + EE   N+ LG  +A R+++ ARP E +KY+ HV+EVG ITS
Sbjct: 597 MMRLDRKLVVLRAEQEAVREEGEVNETLGARVAARVSAVARPPEASKYRNHVEEVGKITS 656

Query: 61  LLLGLSGRLARAENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATL 120
           LLLGLSGRLARAENAL G+  DH +RK LE KRDKL  QLEEAK LK NID+RS N++T+
Sbjct: 657 LLLGLSGRLARAENALYGMPADHVERKILESKRDKLMDQLEEAKILKNNIDKRSVNMSTI 716

Query: 121 LRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETME 169
           L KYL+ EEFADY HFINMKAKL+VD REI DK++LGEEQLAAL+E ++
Sbjct: 717 LAKYLNEEEFADYQHFINMKAKLIVDGREIQDKVKLGEEQLAALKEAID 765

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307210425|gb|EFN86985.1| Protein Shroom [Harpegnathos saltator]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 108/169 (63%), Positives = 133/169 (78%)

Query: 1   MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITS 60
           M RLD KL +LR+ Q  + EE   N+ LG  ++ R+++ ARP E +KY+LHV+EVG ITS
Sbjct: 479 MMRLDRKLVVLRAEQEAVREEGEVNEALGARVSARVSAVARPPEASKYRLHVEEVGKITS 538

Query: 61  LLLGLSGRLARAENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATL 120
           LLLGLSGRLARAENAL G+  DH +RK LE KRDKL  QLEEAK LK NID+RS NV+ +
Sbjct: 539 LLLGLSGRLARAENALYGMPADHAERKILESKRDKLMDQLEEAKILKSNIDKRSVNVSAI 598

Query: 121 LRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETME 169
           L KYL+ EEFADY HFINMKAKL++D REI DK++LGEEQLAAL+E ++
Sbjct: 599 LAKYLNQEEFADYQHFINMKAKLIMDGREIQDKVKLGEEQLAALKEAID 647

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235905|ref|XP_001808038.1| PREDICTED: similar to Protein Shroom [Tribolium castaneum]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 106/168 (63%), Positives = 138/168 (82%)

Query: 1   MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITS 60
           ++RLD KL +LRS Q+ ++EE + ND LGE +   +   ARP E  K++LH++EVG ITS
Sbjct: 469 VNRLDRKLEVLRSEQLVVSEECKINDELGENVEAHIRRLARPHEADKFRLHIEEVGKITS 528

Query: 61  LLLGLSGRLARAENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATL 120
           LLLGLSGRLARAENAL+G+ EDH +R+ LE KRDKL  QLEEAK+LKE IDRRS +V+ +
Sbjct: 529 LLLGLSGRLARAENALMGMPEDHPERRILESKRDKLQDQLEEAKKLKECIDRRSVSVSNI 588

Query: 121 LRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETM 168
           L KYL+SEE+ DY+HFINMKAKL++D++EI+DKI+LGEEQL AL+ET+
Sbjct: 589 LYKYLNSEEYTDYDHFINMKAKLIMDSKEIADKIKLGEEQLLALKETL 636

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004569|gb|EFA01017.1| hypothetical protein TcasGA2_TC003931 [Tribolium castaneum]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 106/168 (63%), Positives = 138/168 (82%)

Query: 1   MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITS 60
           ++RLD KL +LRS Q+ ++EE + ND LGE +   +   ARP E  K++LH++EVG ITS
Sbjct: 481 VNRLDRKLEVLRSEQLVVSEECKINDELGENVEAHIRRLARPHEADKFRLHIEEVGKITS 540

Query: 61  LLLGLSGRLARAENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATL 120
           LLLGLSGRLARAENAL+G+ EDH +R+ LE KRDKL  QLEEAK+LKE IDRRS +V+ +
Sbjct: 541 LLLGLSGRLARAENALMGMPEDHPERRILESKRDKLQDQLEEAKKLKECIDRRSVSVSNI 600

Query: 121 LRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETM 168
           L KYL+SEE+ DY+HFINMKAKL++D++EI+DKI+LGEEQL AL+ET+
Sbjct: 601 LYKYLNSEEYTDYDHFINMKAKLIMDSKEIADKIKLGEEQLLALKETL 648

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
FB|FBgn0085408	1576	Shroom "Shroom" [Drosophila me	0.959	0.104	0.410	9.1e-28
RGD|1310470	263	Shroom3 "shroom family member	0.976	0.638	0.382	2.5e-26
UNIPROTKB|Q27IV2	1788	shroom3 "Protein Shroom3" [Xen	0.994	0.095	0.381	4.3e-26
UNIPROTKB|F1LP26	1872	Shroom3 "Protein Shroom3" [Rat	0.976	0.089	0.382	1.1e-24
UNIPROTKB|F5H3B6	451	SHROOM2 "Protein Shroom2" [Hom	0.976	0.372	0.370	1.5e-24
UNIPROTKB|F1N643	1881	SHROOM3 "Uncharacterized prote	0.976	0.089	0.376	1.8e-24
UNIPROTKB|F1NGD8	1423	Gga.50434 "Uncharacterized pro	0.976	0.118	0.376	2e-24
UNIPROTKB|F1RYS7	1886	SHROOM3 "Uncharacterized prote	0.976	0.089	0.376	2.9e-24
ZFIN|ZDB-GENE-041111-246	1634	shroom4 "shroom family member	0.976	0.102	0.376	4e-24
MGI|MGI:1351655	1986	Shroom3 "shroom family member	0.976	0.084	0.376	4e-24

FB|FBgn0085408 Shroom "Shroom" [Drosophila melanogaster (taxid:7227)]

 Score = 325 (119.5 bits), Expect = 9.1e-28, P = 9.1e-28
 Identities = 69/168 (41%), Positives = 108/168 (64%)

Query:     1 MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITX 60
             +  L+ K+  L+  Q  ++EE   NDRLG+ L  +LA + RP+E +K++ HV  VG+IT 
Sbjct:  1407 IKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITS 1466

Query:    61 XXXXXXXXXXXXENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATL 120
                         E++L   R+   +R +LE KRD L  Q+EEA+ LK +I+RR  ++A L
Sbjct:  1467 LLLSLSERLAQTESSL-ETRQQ--ERGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGL 1523

Query:   121 LRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETM 168
             L K LS++  ADY++FINMKAKL+ DAR+++ +I+  EEQL++L + +
Sbjct:  1524 LAKNLSADMCADYDYFINMKAKLIADARDLAVRIKGSEEQLSSLSDAL 1571

GO:0000902 "cell morphogenesis" evidence=IDA

GO:0030864 "cortical actin cytoskeleton" evidence=IDA

GO:0005923 "tight junction" evidence=ISS

GO:0005856 "cytoskeleton" evidence=ISS

GO:0003779 "actin binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0032438 "melanosome organization" evidence=ISS

GO:0016477 "cell migration" evidence=ISS

RGD|1310470 Shroom3 "shroom family member 3" [Rattus norvegicus (taxid:10116)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 65/170 (38%), Positives = 97/170 (57%)

Query:     4 LDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITXXXX 63
             L  KL  L+  +  L  + R N+ LGE +   ++   +P E  KYK+ + ++  +     
Sbjct:    57 LTHKLETLQEAKGSLLTDIRLNNALGEEVEALISELCKPNEFDKYKMFIGDLDKVVNLLL 116

Query:    64 XXXXXXXXXENALIGLREDHC--DRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLL 121
                      EN L GL ED    +R SL EKR  LA Q E+A+ELKEN+DRR   V  +L
Sbjct:   117 SLSGRLARVENVLSGLGEDASKEERSSLNEKRKVLAGQHEDARELKENLDRRERVVLDIL 176

Query:   122 RKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETMEGE 171
               YLS+E+  DY HF+ MK+ LL++ R++ DKI+LG+EQ+  L E++  +
Sbjct:   177 ANYLSAEQLQDYQHFVKMKSTLLIEQRKLDDKIKLGQEQVRCLLESLPSD 226

GO:0001843 "neural tube closure" evidence=ISO

GO:0002066 "columnar/cuboidal epithelial cell development" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003779 "actin binding" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005856 "cytoskeleton" evidence=ISO

GO:0005912 "adherens junction" evidence=ISO

GO:0007389 "pattern specification process" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0008360 "regulation of cell shape" evidence=ISO

GO:0016324 "apical plasma membrane" evidence=ISO

GO:0030036 "actin cytoskeleton organization" evidence=ISO

GO:0043296 "apical junction complex" evidence=ISO

GO:0045177 "apical part of cell" evidence=ISO

UNIPROTKB|Q27IV2 shroom3 "Protein Shroom3" [Xenopus laevis (taxid:8355)]

 Score = 310 (114.2 bits), Expect = 4.3e-26, P = 4.3e-26
 Identities = 66/173 (38%), Positives = 102/173 (58%)

Query:     1 MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITX 60
             +S L  KL +L+  +  L ++ + N+ LGE + T++ +  +P E  KYK+ + ++  +  
Sbjct:  1586 ISSLTCKLEVLKDAKESLIDDIKLNNSLGEEVETQIETLCKPNEFDKYKMFIGDLDKVVN 1645

Query:    61 XXXXXXXXXXXXENALIGLREDHC--DRKSLEEKRDKLASQLEEAKELKENIDRRSTNVA 118
                         ENAL  L ED    +RK+  EK+ +L  Q E+A+ELKEN+DRR   V 
Sbjct:  1646 LLLSLSGRLARVENALSSLGEDASAEERKTWNEKKKQLCGQHEDARELKENLDRREKLVM 1705

Query:   119 TLLRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETMEGE 171
               L  YL+ EEFA Y HF+ MK+ LL++ RE+ DKI+LG+EQL  L E++  +
Sbjct:  1706 DFLGNYLTGEEFAHYQHFVKMKSALLIEQRELDDKIKLGQEQLRCLTESLPSD 1758

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0003779 "actin binding" evidence=ISS

GO:0005856 "cytoskeleton" evidence=ISS

GO:0005912 "adherens junction" evidence=ISS

GO:0007389 "pattern specification process" evidence=ISS

GO:0016324 "apical plasma membrane" evidence=ISS

GO:0043482 "cellular pigment accumulation" evidence=IMP

GO:0045176 "apical protein localization" evidence=IDA

UNIPROTKB|F1LP26 Shroom3 "Protein Shroom3" [Rattus norvegicus (taxid:10116)]

 Score = 297 (109.6 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 65/170 (38%), Positives = 97/170 (57%)

Query:     4 LDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITXXXX 63
             L  KL  L+  +  L  + R N+ LGE +   ++   +P E  KYK+ + ++  +     
Sbjct:  1666 LTHKLETLQEAKGSLLTDIRLNNALGEEVEALISELCKPNEFDKYKMFIGDLDKVVNLLL 1725

Query:    64 XXXXXXXXXENALIGLREDHC--DRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLL 121
                      EN L GL ED    +R SL EKR  LA Q E+A+ELKEN+DRR   V  +L
Sbjct:  1726 SLSGRLARVENVLSGLGEDASKEERSSLNEKRKVLAGQHEDARELKENLDRRERVVLDIL 1785

Query:   122 RKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETMEGE 171
               YLS+E+  DY HF+ MK+ LL++ R++ DKI+LG+EQ+  L E++  +
Sbjct:  1786 ANYLSAEQLQDYQHFVKMKSTLLIEQRKLDDKIKLGQEQVRCLLESLPSD 1835

GO:0000902 "cell morphogenesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F5H3B6 SHROOM2 "Protein Shroom2" [Homo sapiens (taxid:9606)]

 Score = 283 (104.7 bits), Expect = 1.5e-24, P = 1.5e-24
 Identities = 63/170 (37%), Positives = 95/170 (55%)

Query:     4 LDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITXXXX 63
             +  KL +LR  +  L E+ + N  LG  +   +    +P+E  K+++ + ++  +     
Sbjct:   279 ISRKLQVLREARESLLEDVQANTVLGAEVEAIVKGVCKPSEFDKFRMFIGDLDKVVNLLL 338

Query:    64 XXXXXXXXXENALIGLREDHC--DRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLL 121
                      ENAL  L +     DR+SL EK+  L  Q E+AKELKEN+DRR   V  +L
Sbjct:   339 SLSGRLARVENALNNLDDGASPGDRQSLLEKQRVLIQQHEDAKELKENLDRRERIVFDIL 398

Query:   122 RKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETMEGE 171
               YLS E  ADY HF+ MK+ L+++ RE+ DKI LGEEQL  L ++++ E
Sbjct:   399 ANYLSEESLADYEHFVKMKSALIIEQRELEDKIHLGEEQLKCLLDSLQPE 448

GO:0000902 "cell morphogenesis" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030835 "negative regulation of actin filament depolymerization" evidence=IEA

GO:0031941 "filamentous actin" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043296 "apical junction complex" evidence=IEA

GO:0045217 "cell-cell junction maintenance" evidence=IEA

UNIPROTKB|F1N643 SHROOM3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 295 (108.9 bits), Expect = 1.8e-24, P = 1.8e-24
 Identities = 64/170 (37%), Positives = 97/170 (57%)

Query:     4 LDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITXXXX 63
             L  KL  L+  +  L  + + N+ LGE +   ++   +P E  KYK+ + ++  +     
Sbjct:  1675 LTHKLETLQEAKGSLLMDIKLNNALGEEVEAWISELCKPNEIDKYKMFIGDLDKVVNLLL 1734

Query:    64 XXXXXXXXXENALIGLREDHC--DRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLL 121
                      EN L GL ED    +R SL EKR  L++Q E+A+ELKEN+DRR   V  +L
Sbjct:  1735 SLSGRLARVENVLSGLGEDASNEERSSLNEKRKVLSAQHEDARELKENVDRRERVVLDIL 1794

Query:   122 RKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETMEGE 171
               YLS E+  DY HF+ MK+ LL++ RE+ DKI+LG+EQ+  L E++  +
Sbjct:  1795 ANYLSEEQLQDYRHFVKMKSTLLIEQRELDDKIKLGQEQVKCLLESLPSD 1844

GO:0043296 "apical junction complex" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0007389 "pattern specification process" evidence=IEA

GO:0005912 "adherens junction" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0002066 "columnar/cuboidal epithelial cell development" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000902 "cell morphogenesis" evidence=IEA

UNIPROTKB|F1NGD8 Gga.50434 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 293 (108.2 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 64/170 (37%), Positives = 97/170 (57%)

Query:     4 LDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITXXXX 63
             +  KL +LR  +  L E+   N+ LGE +   +    +P E  K+K+ + ++  +     
Sbjct:  1251 ISRKLQVLREARETLLEDIHANNILGEEVEAIVKEVCKPNEFDKFKMFIGDLDKVVNLLL 1310

Query:    64 XXXXXXXXXENALIGLREDHC--DRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLL 121
                      ENAL  L E+    +R++L EK+  L  Q E+AKELKEN+DRR   V  +L
Sbjct:  1311 SLSGRLARVENALNNLDENTSPEERRTLVEKQKLLTQQHEDAKELKENLDRRERIVFDIL 1370

Query:   122 RKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETMEGE 171
               YLS E  ADY HF+ MK+ L+++ RE+ DKI+LGEEQL  L ++++ E
Sbjct:  1371 ANYLSEENLADYEHFVKMKSALIIEQRELEDKIKLGEEQLKCLTDSLQPE 1420

GO:0000902 "cell morphogenesis" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030835 "negative regulation of actin filament depolymerization" evidence=IEA

GO:0030864 "cortical actin cytoskeleton" evidence=IEA

GO:0031941 "filamentous actin" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043296 "apical junction complex" evidence=IEA

GO:0045217 "cell-cell junction maintenance" evidence=IEA

UNIPROTKB|F1RYS7 SHROOM3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 293 (108.2 bits), Expect = 2.9e-24, P = 2.9e-24
 Identities = 64/170 (37%), Positives = 96/170 (56%)

Query:     4 LDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITXXXX 63
             L  KL  L+  +  L  + + N+ LGE +   ++   +P E  KYK+ + ++  +     
Sbjct:  1680 LTHKLETLQEAKGSLLMDIKLNNALGEEVEAWISELCKPNEIDKYKMFIGDLDKVVNLLL 1739

Query:    64 XXXXXXXXXENALIGLREDHCD--RKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLL 121
                      EN L GL +D  D  R SL EKR  LA Q E+A+ELKEN+DRR   V  +L
Sbjct:  1740 SLSGRLARVENVLSGLGQDASDEERSSLNEKRKVLAGQHEDARELKENLDRRERVVLDIL 1799

Query:   122 RKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETMEGE 171
               YLS E+  DY HF+ MK+ LL++ R++ DKI+LG+EQ+  L E++  +
Sbjct:  1800 ANYLSEEQLQDYQHFVKMKSTLLIEQRKLDDKIKLGQEQVKCLLESLPSD 1849

GO:0043296 "apical junction complex" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0007389 "pattern specification process" evidence=IEA

GO:0005912 "adherens junction" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0002066 "columnar/cuboidal epithelial cell development" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000902 "cell morphogenesis" evidence=IEA

ZFIN|ZDB-GENE-041111-246 shroom4 "shroom family member 4" [Danio rerio (taxid:7955)]

 Score = 291 (107.5 bits), Expect = 4.0e-24, P = 4.0e-24
 Identities = 64/170 (37%), Positives = 99/170 (58%)

Query:     1 MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITX 60
             M  L  KLT+LR  Q  L E+ R N +LG+ + + + +  +P E  KY++ + ++  +T 
Sbjct:  1454 MESLRKKLTVLREAQRGLQEDIRANAQLGDEVESLVLAICKPNEVDKYRMFIGDLDKVTS 1513

Query:    61 XXXXXXXXXXXXENAL--IGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVA 118
                         E+AL  +     H +R  L EK+ +L  Q+ EA+ELKE++DRR   V 
Sbjct:  1514 LLLSLSGRLIRVESALDCVDPETGHQERLQLLEKKKQLLVQMGEAQELKEHVDRREQAVC 1573

Query:   119 TLLRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETM 168
              +L   L+ E+  DY HF+ MKA LLV+ R++ DKI+LGEEQL  L+E++
Sbjct:  1574 RVLGCCLTPEQMRDYGHFVKMKAALLVEQRQLDDKIRLGEEQLRGLRESL 1623

GO:0005737 "cytoplasm" evidence=IEA

GO:0000902 "cell morphogenesis" evidence=IEA

MGI|MGI:1351655 Shroom3 "shroom family member 3" [Mus musculus (taxid:10090)]

 Score = 292 (107.8 bits), Expect = 4.0e-24, P = 4.0e-24
 Identities = 64/170 (37%), Positives = 97/170 (57%)

Query:     4 LDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITXXXX 63
             L  KL  L+  +  L  + + N+ LGE +   ++   +P E  KYK+ + ++  +     
Sbjct:  1780 LTHKLESLQEAKGSLLTDIKLNNALGEEVEALISELCKPNEFDKYKMFIGDLDKVVNLLL 1839

Query:    64 XXXXXXXXXENALIGLREDHC--DRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLL 121
                      EN L GL ED    +R SL EKR  LA Q E+A+ELKEN+DRR   V  +L
Sbjct:  1840 SLSGRLARVENVLRGLGEDASKEERSSLNEKRKVLAGQHEDARELKENLDRRERVVLDIL 1899

Query:   122 RKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETMEGE 171
               YLS+E+  DY HF+ MK+ LL++ R++ DKI+LG+EQ+  L E++  +
Sbjct:  1900 ANYLSAEQLQDYQHFVKMKSTLLIEQRKLDDKIKLGQEQVRCLLESLPSD 1949

GO:0000902 "cell morphogenesis" evidence=IEA

GO:0001843 "neural tube closure" evidence=IMP

GO:0002066 "columnar/cuboidal epithelial cell development" evidence=IDA

GO:0003779 "actin binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IDA

GO:0005874 "microtubule" evidence=IEA

GO:0005912 "adherens junction" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007389 "pattern specification process" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IDA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0030036 "actin cytoskeleton organization" evidence=IGI

GO:0030054 "cell junction" evidence=IEA

GO:0043296 "apical junction complex" evidence=IDA

GO:0045177 "apical part of cell" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	172
pfam08687	274	pfam08687, ASD2, Apx/Shroom domain ASD2	1e-48

>gnl|CDD|219969 pfam08687, ASD2, Apx/Shroom domain ASD2

 Score =  157 bits (400), Expect = 1e-48
 Identities = 79/169 (46%), Positives = 110/169 (65%), Gaps = 2/169 (1%)

Query: 2   SRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSL 61
           S L  KL  L   Q  L E+ + N+RLGE +  ++    +P E  K+++ + ++  + SL
Sbjct: 106 SSLGKKLQDLHEEQESLLEDIQANNRLGEEVEAKVKQACKPNEFEKFRMFIGDLEKVVSL 165

Query: 62  LLGLSGRLARAENALIGLRED--HCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVAT 119
           LL LSGRLAR ENAL  L ED    +R SL EKR  L  Q E+AKELKE++DRR   V  
Sbjct: 166 LLSLSGRLARVENALSRLDEDADPEERASLLEKRKLLTRQHEDAKELKEHVDRRERAVRG 225

Query: 120 LLRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETM 168
           +L +YL +E+ ADY HF+ MKA LL++ RE+ DKI+LGEEQL  L++++
Sbjct: 226 ILARYLPAEQLADYQHFVKMKAALLIEQRELEDKIKLGEEQLRCLRDSL 274

This region is found in the actin binding protein Shroom which mediates apical contriction in epithelial cells and is required for neural tube closure. Length = 274

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
PF08687	264	ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799	100.0

>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons

Probab=100.00  E-value=7.5e-73  Score=486.46  Aligned_cols=168  Identities=49%  Similarity=0.755  Sum_probs=159.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHhhcCchhHHHHHHHHHhHHHHHHHHHHhHhhHHHHHHHhhCCC
Q psy4941           1 MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLSGRLARAENALIGLR   80 (172)
Q Consensus         1 ~~~l~~kL~~L~~eqe~l~ee~~~n~~lG~~ve~~V~~~ckp~E~eKy~~Fi~DlekVv~LLLsLs~RLaRvenaL~~l~   80 (172)
                      |.+|++||.+|+++|++|++|+++|+++|++|+++|+++|+|||++||+|||||||||||||||||||||||||||.+++
T Consensus        95 i~~l~~kl~~L~~eqe~l~ee~~~n~~lG~~ve~~v~~~c~p~E~~Ky~~fi~Dl~kv~~LLLsLs~RLaRve~aL~~~~  174 (264)
T PF08687_consen   95 IESLSKKLEVLQEEQEALQEEIQANEALGAEVEALVQEVCKPNEFEKYRMFIGDLEKVVNLLLSLSGRLARVENALSSLD  174 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             C--CHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhHHHHHHHhcCChHHHhhHHHHHHhHHHHHHHhhchHHHhhhcH
Q psy4941          81 E--DHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGE  158 (172)
Q Consensus        81 ~--d~~Er~~L~~k~~~L~~Q~EDAkeLKe~ldRRe~~v~~iL~~~L~~eql~dY~~fv~mKa~Ll~eqreLddkIklgE  158 (172)
                      +  +++||.+|.+|+++|++|+||||+||+|||||+++|++||++|||+|||+||+|||+|||+|||+||+||||||+||
T Consensus       175 ~~~~~~Er~~L~~k~~~L~~Q~edAk~LKe~~drRe~~v~~iL~~~L~~eq~~dy~~fv~mKa~Ll~eqreLddkiklge  254 (264)
T PF08687_consen  175 EDADPEERESLLEKRRLLQRQLEDAKELKENLDRRERVVSEILARYLSEEQLADYRHFVKMKAALLIEQRELDDKIKLGE  254 (264)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence            5  57899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc
Q psy4941         159 EQLAALQETM  168 (172)
Q Consensus       159 EQL~~L~esL  168 (172)
                      |||+||++||
T Consensus       255 EQL~~L~esL  264 (264)
T PF08687_consen  255 EQLEALRESL  264 (264)
T ss_dssp             HHHHHHCC--
T ss_pred             HHHHHHHhcC
Confidence            9999999986

The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	172
3thf_A	190	Crystal Structure Of The Sd2 Domain From Drosophila		7e-29

>pdb|3THF|A Chain A, Crystal Structure Of The Sd2 Domain From Drosophila Shroom Length = 190

Iteration: 1
 Score =  122 bits (307), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 107/165 (64%), Gaps = 3/165 (1%)
Query: 4   LDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITXXXX 63
           L+ K+  L+  Q  ++EE   NDRLG+ L  +LA + RP+E +K++ HV  VG+IT    
Sbjct: 24  LNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLL 83
Query: 64  XXXXXXXXXENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRK 123
                    E++L   +++   R +LE KRD L  Q+EEA+ LK +I+RR  ++A LL K
Sbjct: 84  SLSERLAQTESSLETRQQE---RGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLAK 140
Query: 124 YLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETM 168
            LS++  ADY++FINMKAKL+ DAR+++ +I+  EEQL++L + +
Sbjct: 141 NLSADMCADYDYFINMKAKLIADARDLAVRIKGSEEQLSSLSDAL 185

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	172
3thf_A	190	Protein shroom; coiled-coil, anti-parallel, helica	7e-37
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster} Length = 190

 Score =  125 bits (314), Expect = 7e-37
 Identities = 77/168 (45%), Positives = 116/168 (69%), Gaps = 3/168 (1%)

Query: 1   MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITS 60
           +  L+ K+  L+  Q  ++EE   NDRLG+ L  +LA + RP+E +K++ HV  VG+ITS
Sbjct: 21  IKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITS 80

Query: 61  LLLGLSGRLARAENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATL 120
           LLL LS RLA+ E++L        +R +LE KRD L  Q+EEA+ LK +I+RR  ++A L
Sbjct: 81  LLLSLSERLAQTESSL---ETRQQERGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGL 137

Query: 121 LRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETM 168
           L K LS++  ADY++FINMKAKL+ DAR+++ +I+  EEQL++L + +
Sbjct: 138 LAKNLSADMCADYDYFINMKAKLIADARDLAVRIKGSEEQLSSLSDAL 185

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 5e-05
 Identities = 30/166 (18%), Positives = 60/166 (36%), Gaps = 44/166 (26%)

Query: 24  GNDRLGEALATRLASEARPAETAKY--KLHV-QEVGHITSLLLG-LSGRLARAENALIGL 79
             D+L   + + L     PAE  K   +L V     HI ++LL  +   + +++  ++  
Sbjct: 351 NCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-- 407

Query: 80  REDHCDRKSLEEKRDK------------LASQLEEAKEL-KENIDRRSTNVATLLRKYLS 126
             +   + SL EK+ K            L  +LE    L +  +D  +     + + + S
Sbjct: 408 -VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN-----IPKTFDS 461

Query: 127 SEEFAD------YNHF------------INMKAKLLVDAREISDKI 154
            +          Y+H             + +   + +D R +  KI
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 4e-04
 Identities = 41/240 (17%), Positives = 73/240 (30%), Gaps = 75/240 (31%)

Query: 2   SRLDSKLTLLRS-----VQVDLNEESRGNDRLGEALATRLASEAR-PA-ETAKY------ 48
           S        L S     VQ  + E  R N    + L + + +E R P+  T  Y      
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 49  ---------KLHV---QEVGHITSLLLGL-------------SGRLARAENAL------- 76
                    K +V   Q    +   LL L             SG+   A +         
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 77  --------IGLREDHCDRKSLEEKRD---KLASQLEEAKELKENIDRRSTNVATLLRKYL 125
                   + L+  +     LE  +    ++        +   NI  R  ++   LR+ L
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 126 SSEEFAD-------------YNHFINMKAKLLVDAR--EISDKIQLGEEQLAALQETMEG 170
            S+ + +             +N F N+  K+L+  R  +++D +        +L      
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
3thf_A	190	Protein shroom; coiled-coil, anti-parallel, helica	100.0

>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=4.6e-74  Score=473.12  Aligned_cols=167  Identities=46%  Similarity=0.695  Sum_probs=161.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHhhcCchhHHHHHHHHHhHHHHHHHHHHhHhhHHHHHHHhhCCC
Q psy4941           1 MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLSGRLARAENALIGLR   80 (172)
Q Consensus         1 ~~~l~~kL~~L~~eqe~l~ee~~~n~~lG~~ve~~V~~~ckp~E~eKy~~Fi~DlekVv~LLLsLs~RLaRvenaL~~l~   80 (172)
                      |++|++||.+|+++|++|++|+++|+++|++|++.|+++|+|||++||+|||||||||||||||||||||||||||.+  
T Consensus        21 i~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~~c~P~E~eKy~~FigDLekVv~LLLsLs~RLaRvenaL~~--   98 (190)
T 3thf_A           21 IKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLSLSERLAQTESSLET--   98 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcc--
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999999997  


Q ss_pred             CCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhHHHHHHHhcCChHHHhhHHHHHHhHHHHHHHhhchHHHhhhcHHH
Q psy4941          81 EDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQ  160 (172)
Q Consensus        81 ~d~~Er~~L~~k~~~L~~Q~EDAkeLKe~ldRRe~~v~~iL~~~L~~eql~dY~~fv~mKa~Ll~eqreLddkIklgEEQ  160 (172)
                       +++||.+|.+|+++|++|+||||+||+|+|||+++|++||++|||+|||+||+|||+|||+||++||+||||||+||||
T Consensus        99 -~~~Er~sL~~K~~~L~~Q~EDAkeLKe~ldRRe~~V~~iL~~~L~~eql~DY~~fv~mKa~Ll~eqReLddkIklgeEQ  177 (190)
T 3thf_A           99 -RQQERGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLAKNLSADMCADYDYFINMKAKLIADARDLAVRIKGSEEQ  177 (190)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence             4899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccC
Q psy4941         161 LAALQETMEG  170 (172)
Q Consensus       161 L~~L~esL~~  170 (172)
                      |+||++||+-
T Consensus       178 L~~L~~sL~q  187 (190)
T 3thf_A          178 LSSLSDALVQ  187 (190)
T ss_dssp             HHHHTTC---
T ss_pred             HHHHHHhhcc
Confidence            9999999974

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00