Psyllid ID: psy4975

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MLDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDDVTR
Secondary Structure (PSIPRED)
cccccccccccccEEEcccccEEEEccHHHHHHHHHccccccEEEEcccccccccEEEEEEEEcccccccHHHHHHHHHHcccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccEEccccEEEccccEEEEEccHHHHHHHHccccHHEEEEEEccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHcccccEEEEEEcHHHccccccHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mldddgwlhtgdlayrlpdgthfiispcelesifrqhpdvedvavigiphdvfgelpaavvvpkpnssvtAEEVKQFVEDqvnpskrlsggvflcsfdfiprtmsgkvkrkdlnetkvmrhddvtr
Flexible Loop (DISEMBL)
MLDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEdqvnpskrlsgGVFLCSfdfiprtmsgkvkrkdlnetkvmrhddvtr
Low Complexity Region (SEG)
MLDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDDVTR
Disordered region (IsUnstruct)
*****GWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP***********************RLSGGVFLCSFDFIPRT***********************
Disordered Region (DISOPRED)
MLDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNE***********
Disordered Region (DISEMBL)
MLDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKV********
Disordered Region (DISPRO)
*L*DDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDDVTR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
P08659	550	Luciferin 4-monooxygenase	N/A	N/A	0.896	0.205	0.395	9e-20
Q01158	548	Luciferin 4-monooxygenase	N/A	N/A	0.896	0.206	0.387	2e-19
P13129	548	Luciferin 4-monooxygenase	N/A	N/A	0.896	0.206	0.379	7e-19
Q9M0X9	544	4-coumarate--CoA ligase-l	yes	N/A	0.865	0.200	0.357	4e-18
Q84P21	546	4-coumarate--CoA ligase-l	no	N/A	0.865	0.199	0.396	5e-18
Q27757	545	Luciferin 4-monooxygenase	N/A	N/A	0.888	0.205	0.392	2e-17
Q26304	548	Luciferin 4-monooxygenase	N/A	N/A	0.888	0.204	0.382	2e-17
Q9S725	556	4-coumarate--CoA ligase 2	no	N/A	0.865	0.196	0.396	3e-17
Q7F1X5	542	4-coumarate--CoA ligase-l	yes	N/A	0.865	0.201	0.373	3e-17
Q10S72	552	4-coumarate--CoA ligase-l	no	N/A	0.865	0.197	0.396	1e-16

>sp|P08659|LUCI_PHOPY Luciferin 4-monooxygenase OS=Photinus pyralis PE=1 SV=1

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 16/129 (12%)

Query: 1   MLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVI 46
           ++D DGWLH+GD+AY   D   FI+              +P ELESI  QHP++ D  V 
Sbjct: 411 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVA 470

Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           G+P D  GELPAAVVV +   ++T +E+  +V  QV  +K+L GGV     D +P+ ++G
Sbjct: 471 GLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFV--DEVPKGLTG 528

Query: 107 KVKRKDLNE 115
           K+  + + E
Sbjct: 529 KLDARKIRE 537

Produces green light with a wavelength of 562 nm.
Photinus pyralis (taxid: 7054)
EC: 1EC: .EC: 1EC: 3EC: .EC: 1EC: 2EC: .EC: 7

>sp|Q01158|LUCI_LUCLA Luciferin 4-monooxygenase OS=Luciola lateralis PE=2 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 16/129 (12%)

Query: 1   MLDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVI 46
           ++D++GWLHTGD+ Y   +   FI+               P ELES+  QHP++ D  V 
Sbjct: 413 IIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPNIFDAGVA 472

Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           G+P  + GELP AVVV +   S+T +EV  +V  QV+ +KRL GGV     D +P+ ++G
Sbjct: 473 GVPDPIAGELPGAVVVLEKGKSMTEKEVMDYVASQVSNAKRLRGGVRFV--DEVPKGLTG 530

Query: 107 KVKRKDLNE 115
           K+  K + E
Sbjct: 531 KIDGKAIRE 539

Produces green light.

Luciola lateralis (taxid: 7052)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: .

EC: 7

>sp|P13129|LUCI_LUCCR Luciferin 4-monooxygenase OS=Luciola cruciata PE=1 SV=1

 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 16/129 (12%)

Query: 1   MLDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVI 46
           ++D++GWLHTGD+ Y   +   FI+               P ELES+  QHP + D  V 
Sbjct: 413 LIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVA 472

Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           G+P  V GELP AVVV +   ++T +EV  +V  QV+ +KRL GGV     D +P+ ++G
Sbjct: 473 GVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFV--DEVPKGLTG 530

Query: 107 KVKRKDLNE 115
           K+  + + E
Sbjct: 531 KIDGRAIRE 539

Produces green light with a wavelength of 544 nm.

Luciola cruciata (taxid: 7051)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: .

EC: 7

>sp|Q9M0X9|4CLL7_ARATH 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 17/126 (13%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIG 47
           +D   W+HTGDL Y   DG  +++              +P ELE +   HPD+ D  VI 
Sbjct: 414 IDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQVAPAELEGLLVSHPDILDAVVIP 473

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
            P +  GE+P A VV  PNSS+T +++++F+  QV P KRL    F+     +P++ +GK
Sbjct: 474 FPDEEAGEVPIAFVVRSPNSSITEQDIQKFIAKQVAPYKRLRRVSFI---SLVPKSAAGK 530

Query: 108 VKRKDL 113
           + R++L
Sbjct: 531 ILRREL 536

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q84P21|4CLL5_ARATH 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/126 (39%), Positives = 68/126 (53%), Gaps = 17/126 (13%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIG 47
           LD +GWL TGDL Y   DG  F++              +P ELE++   HP++ D AVI 
Sbjct: 414 LDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVAPAELEALLLTHPEITDAAVIP 473

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
            P    G+ P A VV K  SS++ + + +FV  QV P KR+    F+ S   IP+  SGK
Sbjct: 474 FPDKEVGQFPMAYVVRKTGSSLSEKTIMEFVAKQVAPYKRIRKVAFVSS---IPKNPSGK 530

Query: 108 VKRKDL 113
           + RKDL
Sbjct: 531 ILRKDL 536

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) and 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid (OPC-8:0) into OPDA-CoA and OPC-8:0-CoA, respectively.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q27757|LUCI_PHOPE Luciferin 4-monooxygenase OS=Photuris pennsylvanica PE=2 SV=2

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/130 (39%), Positives = 72/130 (55%), Gaps = 18/130 (13%)

Query: 1   MLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVI 46
           +++ DGWL +GD+AY   DG  +I+              +P E+E I  QHP + D  V 
Sbjct: 410 IINKDGWLRSGDIAYYDNDGHFYIVDRLKSLIKYKGYQVAPAEIEGILLQHPYIVDAGVT 469

Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGV-FLCSFDFIPRTMS 105
           GIP +  GELPAA VV +    +  + V+ FV  QV+ +K L GGV FL   D IP+  +
Sbjct: 470 GIPDEAAGELPAAGVVVQTGKYLNEQIVQNFVSSQVSTAKWLRGGVKFL---DEIPKGST 526

Query: 106 GKVKRKDLNE 115
           GK+ RK L +
Sbjct: 527 GKIDRKVLRQ 536

Produces green light with a wavelength of 562 nm.

Photuris pennsylvanica (taxid: 41716)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: .

EC: 7

>sp|Q26304|LUCI_LUCMI Luciferin 4-monooxygenase OS=Luciola mingrelica PE=1 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 16/128 (12%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIG 47
           +D++GWLHTGD+ Y   D   FI+               P ELES+  QHP++ D  V G
Sbjct: 414 IDEEGWLHTGDIGYYDEDEHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPNIFDAGVAG 473

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +P    GELP AVVV +   ++T +E+  +V  QV   KRL GGV     D +P+ ++GK
Sbjct: 474 VPDPDAGELPGAVVVMEKGKTMTEKEIVDYVNSQVVNHKRLRGGVRFV--DEVPKGLTGK 531

Query: 108 VKRKDLNE 115
           +  K + E
Sbjct: 532 IDAKVIRE 539

Produces green light with a wavelength of 570 nm.

Luciola mingrelica (taxid: 27446)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: .

EC: 7

>sp|Q9S725|4CL2_ARATH 4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 72/126 (57%), Gaps = 17/126 (13%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIG 47
           +D DGWLHTGD+ +   D   FI+              +P ELES+   HP++ DVAV+ 
Sbjct: 424 IDKDGWLHTGDVGFIDDDDELFIVDRLKELIKYKGFQVAPAELESLLIGHPEINDVAVVA 483

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +  +  GE+P A VV   +S+++ +E+KQFV  QV   KR++   F    D IP+  SGK
Sbjct: 484 MKEEDAGEVPVAFVVRSKDSNISEDEIKQFVSKQVVFYKRINKVFFT---DSIPKAPSGK 540

Query: 108 VKRKDL 113
           + RKDL
Sbjct: 541 ILRKDL 546

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q7F1X5|4CLL5_ORYSJ 4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica GN=4CLL5 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/126 (37%), Positives = 70/126 (55%), Gaps = 17/126 (13%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIG 47
           +D +GWL TGDL Y   DG  +I+               P ELE I + HP + D AVI 
Sbjct: 408 VDSEGWLKTGDLCYFNEDGFLYIVDRLKELIKYKGYQVPPAELEHILQSHPGIADAAVIP 467

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
            P +  GELP A +V +P S++T E+V  +V  QV P K++    F+ +   IP++ +GK
Sbjct: 468 YPDEEAGELPMAFIVRQPGSNITKEQVMDYVAKQVAPYKKVRRVAFVTA---IPKSPAGK 524

Query: 108 VKRKDL 113
           + R++L
Sbjct: 525 ILRREL 530

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q10S72|4CLL4_ORYSJ 4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 66/126 (52%), Gaps = 17/126 (13%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIG 47
           L  DGWL TGDL Y   DG  F++               P ELE++   HP+V DVAVI 
Sbjct: 422 LTPDGWLKTGDLCYIDEDGYLFVVDRLKELIKYKGYQVPPAELEALLLTHPEVTDVAVIP 481

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
            P    G+ P A +V K  S+++  EV +FV  QV P K++    F+     IP+  SGK
Sbjct: 482 FPDREVGQFPMAYIVRKKGSNLSEREVMEFVAKQVAPYKKVRKVAFVTD---IPKNASGK 538

Query: 108 VKRKDL 113
           + RKDL
Sbjct: 539 ILRKDL 544

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
321463518	488	hypothetical protein DAPPUDRAFT_307209 [	0.873	0.225	0.468	1e-21
340714658	537	PREDICTED: luciferin 4-monooxygenase-lik	0.896	0.210	0.426	3e-21
321476815	535	hypothetical protein DAPPUDRAFT_311964 [	0.904	0.213	0.415	3e-21
350410978	544	PREDICTED: luciferin 4-monooxygenase-lik	0.896	0.207	0.426	4e-21
270002347	544	hypothetical protein TcasGA2_TC001358 [T	0.888	0.205	0.445	4e-21
189234969	534	PREDICTED: similar to CG6178 CG6178-PA [	0.888	0.209	0.445	5e-21
328866678	534	4-coumarate-CoA ligase [Dictyostelium fa	0.880	0.207	0.448	7e-21
380025349	537	PREDICTED: luciferin 4-monooxygenase-lik	0.896	0.210	0.403	1e-20
321454542	530	hypothetical protein DAPPUDRAFT_303557 [	0.880	0.209	0.425	1e-20
66509103	537	PREDICTED: luciferin 4-monooxygenase-lik	0.896	0.210	0.403	1e-20

>gi|321463518|gb|EFX74533.1| hypothetical protein DAPPUDRAFT_307209 [Daphnia pulex]

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/126 (46%), Positives = 76/126 (60%), Gaps = 16/126 (12%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIG 47
           +D  GWLHTGD+AY       FI+              SP ELE + R+HP V DVAVIG
Sbjct: 356 IDSAGWLHTGDIAYYNEQNQFFIVDRLKELIKVKGLQVSPSELEDVLRRHPAVLDVAVIG 415

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           IP D+ GELP A VV K   SV+ E++ +FV+ +V P KRL GGV     D IP+T +GK
Sbjct: 416 IPDDMSGELPRAYVVKKNGVSVSKEDIAEFVDAKVAPHKRLKGGVMF--IDAIPKTNTGK 473

Query: 108 VKRKDL 113
           + R++L
Sbjct: 474 LLRREL 479

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714658|ref|XP_003395843.1| PREDICTED: luciferin 4-monooxygenase-like [Bombus terrestris]

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/129 (42%), Positives = 80/129 (62%), Gaps = 16/129 (12%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIG 47
           +D DGWLH+GD+ Y    G  +I+               P ELE+I    P+++D AVIG
Sbjct: 406 IDKDGWLHSGDVGYYDEQGYFYIVDRMKELIKYKGFQVPPAELEAILLTCPEIKDAAVIG 465

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +PH+  GELPAA VV +  S++TAE++ +FV ++V+  KRL GGV     + IPRT SGK
Sbjct: 466 LPHEEAGELPAAFVVKQEGSNITAEDIIKFVNERVSSHKRLRGGVKF--IESIPRTASGK 523

Query: 108 VKRKDLNET 116
           + R+ L++T
Sbjct: 524 ILRRILHDT 532

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321476815|gb|EFX87775.1| hypothetical protein DAPPUDRAFT_311964 [Daphnia pulex]

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/130 (41%), Positives = 75/130 (57%), Gaps = 16/130 (12%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
           +D DGWLH+GD+ Y   DG  FI              +SP ELE I   HPD++D AV  
Sbjct: 405 VDTDGWLHSGDVGYYDDDGFFFITDRKKELIKFKGLQVSPTELEKILLGHPDIQDAAVAP 464

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +P +  GELP A ++ +P S+VT  ++ +F+ DQV+  KRL GGV     D IP+T +GK
Sbjct: 465 VPDEAAGELPRAYIIKRPGSTVTENDIAKFIADQVSAHKRLRGGVVFV--DSIPKTATGK 522

Query: 108 VKRKDLNETK 117
           + R+ L   K
Sbjct: 523 IMRRQLKTIK 532

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350410978|ref|XP_003489199.1| PREDICTED: luciferin 4-monooxygenase-like [Bombus impatiens]

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 55/129 (42%), Positives = 80/129 (62%), Gaps = 16/129 (12%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIG 47
           +D DGWLH+GD+ Y    G  +I+               P ELE+I    P+++D AVIG
Sbjct: 413 IDKDGWLHSGDVGYYDEQGYFYIVDRMKELIKYKGFQVPPAELEAILLTCPEIKDAAVIG 472

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +PH+  GELPAA VV +  S++TAE++ +FV ++V+  KRL GGV     + IPRT SGK
Sbjct: 473 LPHEEAGELPAAFVVKQEGSNITAEDIIKFVNERVSSHKRLRGGVKF--IENIPRTASGK 530

Query: 108 VKRKDLNET 116
           + R+ L++T
Sbjct: 531 ILRRILHDT 539

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002347|gb|EEZ98794.1| hypothetical protein TcasGA2_TC001358 [Tribolium castaneum]

 Score =  105 bits (263), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/128 (44%), Positives = 75/128 (58%), Gaps = 16/128 (12%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIG 47
           +D DGW+HTGD+AY   DG  FI+              +P ELE++   HP V D AVIG
Sbjct: 410 IDQDGWIHTGDVAYYDEDGYFFIVDRIKELIKYKGYQVAPAELEALLITHPAVADAAVIG 469

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +P +  GELP A VV KPN   T +E+++FV D V+  K+L GGV     D IPR  SGK
Sbjct: 470 LPDERAGELPLAFVVKKPNHETTDKELEKFVADNVSSQKQLRGGVVF--IDAIPRNPSGK 527

Query: 108 VKRKDLNE 115
           + R+ L +
Sbjct: 528 ILRRHLKQ 535

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234969|ref|XP_973874.2| PREDICTED: similar to CG6178 CG6178-PA [Tribolium castaneum]

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/128 (44%), Positives = 75/128 (58%), Gaps = 16/128 (12%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIG 47
           +D DGW+HTGD+AY   DG  FI+              +P ELE++   HP V D AVIG
Sbjct: 400 IDQDGWIHTGDVAYYDEDGYFFIVDRIKELIKYKGYQVAPAELEALLITHPAVADAAVIG 459

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +P +  GELP A VV KPN   T +E+++FV D V+  K+L GGV     D IPR  SGK
Sbjct: 460 LPDERAGELPLAFVVKKPNHETTDKELEKFVADNVSSQKQLRGGVVF--IDAIPRNPSGK 517

Query: 108 VKRKDLNE 115
           + R+ L +
Sbjct: 518 ILRRHLKQ 525

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328866678|gb|EGG15061.1| 4-coumarate-CoA ligase [Dictyostelium fasciculatum]

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 57/127 (44%), Positives = 76/127 (59%), Gaps = 16/127 (12%)

Query: 1   MLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVI 46
           ++D DG+LHTGD+ Y   DG  FI              + P ELE    QHP + D AVI
Sbjct: 401 VIDQDGFLHTGDVGYIDEDGYCFITDRFKELIKYKGFQVPPAELEGTLLQHPLIIDCAVI 460

Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           G+P +  GELP A VV KPNS ++  E++Q++E +V   KRL GGV L   D IP++ +G
Sbjct: 461 GVPDETCGELPRAYVVIKPNSQISPSEIQQWLEPKVAHYKRLRGGVVL--IDVIPKSAAG 518

Query: 107 KVKRKDL 113
           K+ RKDL
Sbjct: 519 KILRKDL 525

Source: Dictyostelium fasciculatum

Species: Dictyostelium fasciculatum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|380025349|ref|XP_003696437.1| PREDICTED: luciferin 4-monooxygenase-like [Apis florea]

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/129 (40%), Positives = 78/129 (60%), Gaps = 16/129 (12%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIG 47
           +D DGWLH+GD+ Y    G  +I+               P ELE+I    P+++D AVIG
Sbjct: 406 IDKDGWLHSGDVGYYDEQGYFYIVDRLKELIKYKGFQVPPAELEAILLTCPEIKDAAVIG 465

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +PH+  GELP A +V +  S++TAE++ +FV ++V+  KRL GG+     + IPRT SGK
Sbjct: 466 LPHEEAGELPTAFIVKQKGSNITAEDIIKFVNERVSSHKRLRGGIKF--IENIPRTASGK 523

Query: 108 VKRKDLNET 116
           + R+ L +T
Sbjct: 524 ILRRVLRDT 532

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321454542|gb|EFX65709.1| hypothetical protein DAPPUDRAFT_303557 [Daphnia pulex]

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 76/127 (59%), Gaps = 16/127 (12%)

Query: 1   MLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVI 46
           M+D + WLHTGD+ Y   +G  ++              I+P ELE +   H +V D AVI
Sbjct: 399 MIDSNNWLHTGDIGYYDEEGFFYVVDRLKELIKYKGMQIAPSELEHLLLTHEEVADAAVI 458

Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           GIP +  GELP A VV +P S+V+  ++ +FVE+QV P KRL GGV     D IP+ +SG
Sbjct: 459 GIPDEFAGELPRAYVVKRPGSTVSESDIVRFVEEQVAPFKRLRGGVIF--IDAIPKLLSG 516

Query: 107 KVKRKDL 113
           K+ R++L
Sbjct: 517 KILRREL 523

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66509103|ref|XP_394579.2| PREDICTED: luciferin 4-monooxygenase-like [Apis mellifera]

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/129 (40%), Positives = 78/129 (60%), Gaps = 16/129 (12%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIG 47
           +D DGWLH+GD+ Y    G  +I+               P ELE+I    P+++D AVIG
Sbjct: 406 IDKDGWLHSGDVGYYDEQGYFYIVDRLKELIKYKGFQVPPAELEAILLTCPEIKDAAVIG 465

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +PH+  GELP A +V +  S++TAE++ +FV ++V+  KRL GG+     + IPRT SGK
Sbjct: 466 LPHEEAGELPTAFIVKQKGSNITAEDIIKFVNERVSSHKRLRGGIKF--IENIPRTASGK 523

Query: 108 VKRKDLNET 116
           + R+ L +T
Sbjct: 524 ILRRVLRDT 532

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
UNIPROTKB|P08659	550	P08659 "Luciferin 4-monooxygen	0.896	0.205	0.395	4.7e-18
WB|WBGene00008669	544	acs-14 [Caenorhabditis elegans	0.857	0.198	0.416	1.2e-17
FB|FBgn0039156	544	CG6178 [Drosophila melanogaste	0.865	0.200	0.416	7.2e-17
UNIPROTKB|Q26304	548	Q26304 "Luciferin 4-monooxygen	0.888	0.204	0.382	1.2e-16
TAIR|locus:2094716	556	4CL2 "4-coumarate:CoA ligase 2	0.865	0.196	0.404	2.6e-16
TAIR|locus:2115673	544	AT4G05160 [Arabidopsis thalian	0.865	0.200	0.357	3.2e-16
ASPGD|ASPL0000054705	560	AN0649 [Emericella nidulans (t	0.880	0.198	0.390	3.4e-16
TAIR|locus:2015499	542	ACOS5 "acyl-CoA synthetase 5"	0.904	0.210	0.378	5.2e-16
TAIR|locus:2034392	546	OPCL1 "OPC-8:0 CoA ligase1" [A	0.865	0.199	0.396	8.7e-16
FB|FBgn0027601	597	pdgy "pudgy" [Drosophila melan	0.880	0.185	0.371	1e-15

UNIPROTKB|P08659 P08659 "Luciferin 4-monooxygenase" [Photinus pyralis (taxid:7054)]

 Score = 227 (85.0 bits), Expect = 4.7e-18, P = 4.7e-18
 Identities = 51/129 (39%), Positives = 75/129 (58%)

Query:     1 MLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVI 46
             ++D DGWLH+GD+AY   D   FI+              +P ELESI  QHP++ D  V 
Sbjct:   411 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVA 470

Query:    47 GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
             G+P D  GELPAAVVV +   ++T +E+  +V  QV  +K+L GGV     D +P+ ++G
Sbjct:   471 GLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFV--DEVPKGLTG 528

Query:   107 KVKRKDLNE 115
             K+  + + E
Sbjct:   529 KLDARKIRE 537

GO:0005777 "peroxisome" evidence=IDA

WB|WBGene00008669 acs-14 [Caenorhabditis elegans (taxid:6239)]

 Score = 223 (83.6 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 52/125 (41%), Positives = 73/125 (58%)

Query:     5 DGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPH 50
             DGWLHTGD+ Y   DG  FI+               P ELE +   HP + D AVIGIP 
Sbjct:   417 DGWLHTGDIGYLNEDGNLFIVDRLKELIKVKGLQVPPAELEDLLLSHPKIRDCAVIGIPD 476

Query:    51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
                GELP A VV + ++++T +EVK FV+ +V+P K+L GGV     + IP++ +GK+ R
Sbjct:   477 AKAGELPKAFVV-RADNTLTEQEVKDFVKPKVSPYKQLEGGVEF--IEEIPKSAAGKILR 533

Query:   111 KDLNE 115
             + L +
Sbjct:   534 RFLRD 538

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

FB|FBgn0039156 CG6178 [Drosophila melanogaster (taxid:7227)]

 Score = 216 (81.1 bits), Expect = 7.2e-17, P = 7.2e-17
 Identities = 52/125 (41%), Positives = 68/125 (54%)

Query:     5 DGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPH 50
             DGWLHTGD+ Y   D   FI+               P E+E++   +  ++D AVIG P 
Sbjct:   413 DGWLHTGDIGYYDDDFEFFIVDRIKELIKYKGYQVPPAEIEALLLTNDKIKDAAVIGKPD 472

Query:    51 DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
             +  GELP A VV + N  +T  EV QFV D  +P+KRL GGV     D IP+  SGK+ R
Sbjct:   473 EEAGELPLAFVVKQANVQLTENEVIQFVNDNASPAKRLRGGVIFV--DEIPKNPSGKILR 530

Query:   111 KDLNE 115
             + L E
Sbjct:   531 RILRE 535

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IDA

GO:0045289 "luciferin monooxygenase activity" evidence=IDA

GO:0006637 "acyl-CoA metabolic process" evidence=IDA

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

UNIPROTKB|Q26304 Q26304 "Luciferin 4-monooxygenase" [Luciola mingrelica (taxid:27446)]

 Score = 214 (80.4 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 49/128 (38%), Positives = 70/128 (54%)

Query:     2 LDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIG 47
             +D++GWLHTGD+ Y   D   FI+               P ELES+  QHP++ D  V G
Sbjct:   414 IDEEGWLHTGDIGYYDEDEHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPNIFDAGVAG 473

Query:    48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
             +P    GELP AVVV +   ++T +E+  +V  QV   KRL GGV     D +P+ ++GK
Sbjct:   474 VPDPDAGELPGAVVVMEKGKTMTEKEIVDYVNSQVVNHKRLRGGVRFV--DEVPKGLTGK 531

Query:   108 VKRKDLNE 115
             +  K + E
Sbjct:   532 IDAKVIRE 539

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0005777 "peroxisome" evidence=ISS

GO:0008218 "bioluminescence" evidence=IDA

GO:0047077 "Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity" evidence=IDA

TAIR|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 51/126 (40%), Positives = 73/126 (57%)

Query:     2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIG 47
             +D DGWLHTGD+ +   D   FI+              +P ELES+   HP++ DVAV+ 
Sbjct:   424 IDKDGWLHTGDVGFIDDDDELFIVDRLKELIKYKGFQVAPAELESLLIGHPEINDVAVVA 483

Query:    48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
             +  +  GE+P A VV   +S+++ +E+KQFV  QV   KR++  VF    D IP+  SGK
Sbjct:   484 MKEEDAGEVPVAFVVRSKDSNISEDEIKQFVSKQVVFYKRINK-VFFT--DSIPKAPSGK 540

Query:   108 VKRKDL 113
             + RKDL
Sbjct:   541 ILRKDL 546

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 3.2e-16, P = 3.2e-16
 Identities = 45/126 (35%), Positives = 70/126 (55%)

Query:     2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIG 47
             +D   W+HTGDL Y   DG  +++              +P ELE +   HPD+ D  VI 
Sbjct:   414 IDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQVAPAELEGLLVSHPDILDAVVIP 473

Query:    48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
              P +  GE+P A VV  PNSS+T +++++F+  QV P KRL    F+     +P++ +GK
Sbjct:   474 FPDEEAGEVPIAFVVRSPNSSITEQDIQKFIAKQVAPYKRLRRVSFI---SLVPKSAAGK 530

Query:   108 VKRKDL 113
             + R++L
Sbjct:   531 ILRREL 536

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

ASPGD|ASPL0000054705 AN0649 [Emericella nidulans (taxid:162425)]

 Score = 210 (79.0 bits), Expect = 3.4e-16, P = 3.4e-16
 Identities = 50/128 (39%), Positives = 73/128 (57%)

Query:     2 LDDDGWLHTGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIG 47
             L +DGWL TGD+A+   +G  H +             ++P ELE+I  +HP V D AVIG
Sbjct:   423 LTEDGWLRTGDIAFVSNEGWFHVVDRKKELIKVKGNQVAPAELEAILLEHPAVADAAVIG 482

Query:    48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
             +P D   E P A +  KP  + TA+++  F+E +V+  KR++GGV     + IP+  SGK
Sbjct:   483 VPKDE-DEAPRAYIALKPGKNATAKDITTFMEGKVSRIKRITGGVVFV--EAIPKNPSGK 539

Query:   108 VKRKDLNE 115
             + RK L E
Sbjct:   540 ILRKALRE 547

GO:0006631 "fatty acid metabolic process" evidence=RCA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=RCA

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2015499 ACOS5 "acyl-CoA synthetase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 5.2e-16, P = 5.2e-16
 Identities = 50/132 (37%), Positives = 75/132 (56%)

Query:     2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIG 47
             +D+ GWLHTGD+ Y   DG  FI+              +P ELE+I   HP VEDVAV+ 
Sbjct:   410 IDEQGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDVAVVP 469

Query:    48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
             +P +  GE+PAA VV  P ++   E++  FV   V   K++    F+   D IP+++SGK
Sbjct:   470 LPDEEAGEIPAACVVINPKATEKEEDILNFVAANVAHYKKVRAVHFV---DSIPKSLSGK 526

Query:   108 VKRKDLNETKVM 119
             + R+ L + K++
Sbjct:   527 IMRRLLRD-KIL 537

GO:0003824 "catalytic activity" evidence=IEA

GO:0010584 "pollen exine formation" evidence=RCA;IMP

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS;IDA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0031956 "medium-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IDA

GO:0080110 "sporopollenin biosynthetic process" evidence=IMP;TAS

TAIR|locus:2034392 OPCL1 "OPC-8:0 CoA ligase1" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 8.7e-16, P = 8.7e-16
 Identities = 50/126 (39%), Positives = 68/126 (53%)

Query:     2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIG 47
             LD +GWL TGDL Y   DG  F++              +P ELE++   HP++ D AVI 
Sbjct:   414 LDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVAPAELEALLLTHPEITDAAVIP 473

Query:    48 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
              P    G+ P A VV K  SS++ + + +FV  QV P KR+    F+ S   IP+  SGK
Sbjct:   474 FPDKEVGQFPMAYVVRKTGSSLSEKTIMEFVAKQVAPYKRIRKVAFVSS---IPKNPSGK 530

Query:   108 VKRKDL 113
             + RKDL
Sbjct:   531 ILRKDL 536

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

FB|FBgn0027601 pdgy "pudgy" [Drosophila melanogaster (taxid:7227)]

 Score = 206 (77.6 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 42/113 (37%), Positives = 64/113 (56%)

Query:     3 DDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 62
             D+DG  +  D    L     F + P ELE++ R HP + + AV GIPH+  GE P A+VV
Sbjct:   483 DEDGLFYITDRMKELIKVKGFQVPPAELEAVLRDHPKILEAAVFGIPHEFNGEAPRAIVV 542

Query:    63 PKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNE 115
              +     +AEE+  +V ++V   K+L GGV     D +P+  +GK+ R++L E
Sbjct:   543 LRQGEKASAEEISAYVAERVAHYKKLEGGVIFV--DEVPKNPTGKILRRELKE 593

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0046627 "negative regulation of insulin receptor signaling pathway" evidence=IDA

GO:0071616 "acyl-CoA biosynthetic process" evidence=IDA

GO:0009062 "fatty acid catabolic process" evidence=IDA

GO:0019433 "triglyceride catabolic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	126
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	9e-38
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	2e-33
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	2e-31
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	3e-31
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	3e-30
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	3e-29
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	3e-29
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	3e-28
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	3e-26
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	8e-26
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	1e-24
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	9e-24
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	1e-23
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	1e-23
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	1e-23
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	3e-23
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	9e-22
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	1e-21
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-21
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	4e-21
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	5e-21
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	2e-20
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	4e-20
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	1e-19
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	1e-19
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	2e-19
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	6e-19
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	7e-19
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	1e-18
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	2e-18
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	2e-18
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	2e-18
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	4e-18
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	4e-18
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	2e-17
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	5e-17
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	8e-17
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	2e-16
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	2e-16
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-16
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	3e-16
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	4e-16
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	1e-15
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	1e-15
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	1e-15
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	2e-15
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	4e-15
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	4e-15
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	5e-15
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	5e-15
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	6e-15
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	1e-14
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	1e-14
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	2e-14
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	2e-14
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	3e-14
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	4e-14
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	5e-14
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	5e-14
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	6e-14
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	7e-14
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	1e-13
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	2e-13
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	4e-13
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	8e-13
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	1e-12
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	1e-12
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	1e-12
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	2e-12
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-12
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	2e-12
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	5e-12
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	7e-12
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	1e-11
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	1e-11
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	3e-11
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	3e-11
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	3e-11
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	3e-11
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	5e-11
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	1e-10
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	2e-10
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-10
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	2e-10
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	5e-10
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	5e-10
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	5e-10
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	5e-10
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-09
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	2e-09
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	2e-09
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	2e-09
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	3e-09
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	4e-09
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	4e-09
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	8e-09
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	1e-08
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	1e-08
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	2e-08
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	2e-08
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	2e-08
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	4e-08
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	1e-07
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	1e-07
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	1e-07
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	3e-07
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	3e-07
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	6e-07
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	6e-07
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	8e-07
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	1e-06
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	1e-06
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	2e-06
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	4e-06
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	1e-05
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	3e-05
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	7e-05
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	1e-04
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-04
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	2e-04
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	3e-04
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	5e-04
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	7e-04
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	8e-04
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	0.001
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	0.001
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	0.002
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	0.002
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.003
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	0.003
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	0.004
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	0.004

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  132 bits (335), Expect = 9e-38
 Identities = 56/123 (45%), Positives = 73/123 (59%), Gaps = 18/123 (14%)

Query: 1   MLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVI 46
            +D+DGWLHTGD+ Y   DG  +I              + P ELE++  +HP V D AVI
Sbjct: 367 TIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVADAAVI 426

Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSF-DFIPRTMS 105
           GIP +V GELP A VV KP S +T +EVK +V  +V   K+L GGV    F D IP++ S
Sbjct: 427 GIPDEVAGELPRAYVVLKPGSKLTEQEVKDYVAKKVAKYKQLRGGVV---FVDEIPKSPS 483

Query: 106 GKV 108
           GK+
Sbjct: 484 GKI 486

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  121 bits (305), Expect = 2e-33
 Identities = 53/127 (41%), Positives = 74/127 (58%), Gaps = 17/127 (13%)

Query: 1   MLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVI 46
            +D DGWLHTGDL Y   DG  FI              ++P ELE++   HP++ D AVI
Sbjct: 381 TIDKDGWLHTGDLGYFDEDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVI 440

Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
             P +  GE+P A VV +P S ++ +EV QFV  QV P K++   VF+   D IP++ SG
Sbjct: 441 PYPDEEAGEIPMAFVVRQPGSELSEDEVMQFVAKQVAPYKKVRKVVFV---DAIPKSPSG 497

Query: 107 KVKRKDL 113
           K+ R++L
Sbjct: 498 KILRREL 504

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  116 bits (292), Expect = 2e-31
 Identities = 47/129 (36%), Positives = 66/129 (51%), Gaps = 23/129 (17%)

Query: 4   DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
           D GWLHTGD+ Y   DG  +I              I P ELE     HP V +VAVIG+P
Sbjct: 393 DGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVP 452

Query: 50  HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFI---PRTMSG 106
            + +GE P AVVV KP +++ A+E++ F+  ++   K            F+   PRT  G
Sbjct: 453 DEKWGERPVAVVVLKPGATLDAKELRAFLRGRLAKFKLPK------RIAFVDELPRTSVG 506

Query: 107 KVKRKDLNE 115
           K+ ++ L E
Sbjct: 507 KILKRVLRE 515

Length = 521

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  115 bits (289), Expect = 3e-31
 Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 19/130 (14%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
            D+DGWL TGDL Y   DG  +I              I P E+E++  +HP V + AV+G
Sbjct: 397 FDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVG 456

Query: 48  IPHDVFGELPAAVVVPKP--NSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMS 105
           +P + +GE   AVVV KP  ++ +TAEE++ F+  ++   K     VF+   D +PRT S
Sbjct: 457 VPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRIVVFV---DELPRTAS 513

Query: 106 GKVKRKDLNE 115
           GK+ R+ L E
Sbjct: 514 GKIDRRALRE 523

Length = 534

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  110 bits (277), Expect = 3e-30
 Identities = 48/126 (38%), Positives = 69/126 (54%), Gaps = 23/126 (18%)

Query: 5   DGWLHTGDLAYRLPDGTHF--------IIS------PCELESIFRQHPDVEDVAVIGIPH 50
           DGWLHTGDL Y   DG  +        IIS      P E+E++   HP V DVAVIG+P 
Sbjct: 222 DGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPD 281

Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFI---PRTMSGK 107
           + +GE   AVVV +P +++ AEE+  F  +++   K         S +F+   PR  SGK
Sbjct: 282 EEWGEAVVAVVVLRPGATLDAEELIAFCRERLAGYKVPK------SVEFVDELPRNASGK 335

Query: 108 VKRKDL 113
           + +++L
Sbjct: 336 ILKREL 341

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  107 bits (271), Expect = 3e-29
 Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 21/128 (16%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
           +D DGWLHTGDL Y   DG   I              I P E+E     HP V + AV+G
Sbjct: 224 IDADGWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVG 283

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSK--RLSGGVFLCSFDFIPRTMS 105
           +P +  GE+ AA VV KP +++T EE+  F   ++   K  R     ++   D +PRT S
Sbjct: 284 VPDERLGEVVAAFVVLKPGATLTEEELIAFCRGRLARFKVPR-----YVRFVDELPRTAS 338

Query: 106 GKVKRKDL 113
           GK+++  L
Sbjct: 339 GKIQKFKL 346

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  109 bits (275), Expect = 3e-29
 Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 17/124 (13%)

Query: 4   DDGWLHTGDLAYRLPDG--------THFIIS------PCELESIFRQHPDVEDVAVIGIP 49
            DGWL TGD+ Y   DG           II       P E+E +   HP V + AV+G+P
Sbjct: 347 TDGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEAAVVGVP 406

Query: 50  HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
               GE   A VV K  +S+T EE+  F  +++   K      F    D +P++  GK+ 
Sbjct: 407 DPYRGEAVKAFVVLKEGASLTEEELIAFCRERLAAYKVPRQVEFR---DELPKSAVGKIL 463

Query: 110 RKDL 113
           R++L
Sbjct: 464 RREL 467

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  105 bits (263), Expect = 3e-28
 Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 17/120 (14%)

Query: 5   DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
           DGW  TGDL Y   DG  F+              ISP E+E +  +HP V +  V G+P 
Sbjct: 224 DGWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGVPD 283

Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
           +++GE  AA VV + +S VT EE++ F   ++   K     +F+   D +P+  +GK++R
Sbjct: 284 ELYGEEVAAAVVLRADSKVTIEELRDFARKRLAAFKVPKKILFV---DALPKGATGKIQR 340

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  101 bits (254), Expect = 3e-26
 Identities = 51/126 (40%), Positives = 69/126 (54%), Gaps = 17/126 (13%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIG 47
           +D DGWLHTGD+ Y   D   FI+              +P ELE++   HP + D AV+ 
Sbjct: 408 IDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVP 467

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +  +V GE+P A VV    S +T +E+KQFV  QV   KR+    F+   D IP+  SGK
Sbjct: 468 MKDEVAGEVPVAFVVRSNGSEITEDEIKQFVAKQVVFYKRIHKVFFV---DSIPKAPSGK 524

Query: 108 VKRKDL 113
           + RKDL
Sbjct: 525 ILRKDL 530

Length = 537

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score = 98.5 bits (246), Expect = 8e-26
 Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 17/119 (14%)

Query: 5   DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
           DGW  TGDL Y   +G  +I              + P E+ES+  QHP V + AV+G+P 
Sbjct: 223 DGWYRTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPD 282

Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
           +  GE   A VV +P +   AEE+K  + +++ P K      F+   D +P+T SGK+ 
Sbjct: 283 EDRGERIVAFVVLRPGADALAEELKAHLRERLAPYKVPRVIEFV---DELPKTASGKID 338

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 96.9 bits (242), Expect = 1e-24
 Identities = 49/128 (38%), Positives = 63/128 (49%), Gaps = 17/128 (13%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
           L  DGW  TGD+A    DG   I              IS  ELE+    HP V + AV+G
Sbjct: 393 LTRDGWFRTGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVG 452

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +PH+ +GE P AVVV KP + VT EE+ + +  +V     L   V     D IP+T  GK
Sbjct: 453 VPHEKWGERPLAVVVLKPGAKVTEEELLEHLAKKV-AKWWLPDRVVF--VDEIPKTSVGK 509

Query: 108 VKRKDLNE 115
             +K L E
Sbjct: 510 FDKKALRE 517

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 93.8 bits (234), Expect = 9e-24
 Identities = 46/127 (36%), Positives = 67/127 (52%), Gaps = 18/127 (14%)

Query: 1   MLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVI 46
            LD+DGW HTGDL Y   +G  ++              I P E+E++  QHP VE+ AV+
Sbjct: 283 PLDEDGWFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVV 342

Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           G+P D +G+ P A VVP  +  V+ EE++ F+ D++   KR            +PR  SG
Sbjct: 343 GVPDDEWGQRPVAFVVPN-DDPVSVEELQAFLADKLAKYKR---PKRWYPLPELPRNASG 398

Query: 107 KVKRKDL 113
           K+ R  L
Sbjct: 399 KIDRAAL 405

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 94.1 bits (234), Expect = 1e-23
 Identities = 46/126 (36%), Positives = 71/126 (56%), Gaps = 17/126 (13%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
           +D DGWL TGD+AY   DG  +I              I+P +LE++   HP++ D AV  
Sbjct: 426 IDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTA 485

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +P    GE+P A VV +  S+++ E V  +V  QV P K++   VF+ S   IP++ +GK
Sbjct: 486 VPDKECGEIPVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRKVVFVQS---IPKSPAGK 542

Query: 108 VKRKDL 113
           + R++L
Sbjct: 543 ILRREL 548

Length = 560

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 93.5 bits (233), Expect = 1e-23
 Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 18/124 (14%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI---------------ISPCELESIFRQHPDVEDVAVI 46
             +DGW  TGD+     DG + I               +S  E+E    +HP V +VAVI
Sbjct: 310 FTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVI 369

Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           G+P   +GE   AVVVP+  +++T  E++ +  +++ P K     + +   D +PR   G
Sbjct: 370 GVPDPDWGEAVVAVVVPEAGAALTLAELRAWAREKLAPYKIPKRVIVV---DELPRNAMG 426

Query: 107 KVKR 110
           KV++
Sbjct: 427 KVQK 430

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 93.4 bits (233), Expect = 1e-23
 Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 17/123 (13%)

Query: 5   DGWLHTGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPH 50
           +GW HTGD   R  DG  +F+             IS  E+E+    HP V + AV+ +P 
Sbjct: 301 NGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPS 360

Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
           ++  +   AVVV +P  ++  E + +F  D++          ++   D +P+T + K+++
Sbjct: 361 ELGEDEVKAVVVLRPGETLDPEALLEFCRDRLPYFMVPR---YIEFVDELPKTPTEKIQK 417

Query: 111 KDL 113
            +L
Sbjct: 418 AEL 420

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 92.7 bits (230), Expect = 3e-23
 Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 17/128 (13%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIG 47
           +D+DGWLHTGD+ Y   DG  FI+              +P ELE+I   HP VED AV+ 
Sbjct: 413 IDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVP 472

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +P +  GE+PAA VV  P +  + E++  FV   V   K++    F+   D IP+++SGK
Sbjct: 473 LPDEEAGEIPAACVVINPKAKESEEDILNFVAANVAHYKKVRVVQFV---DSIPKSLSGK 529

Query: 108 VKRKDLNE 115
           + R+ L E
Sbjct: 530 IMRRLLKE 537

Length = 546

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 88.5 bits (220), Expect = 9e-22
 Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 19/128 (14%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
           LD   +  TGDL Y   +G  F               + P E+E++  QHP V +V VIG
Sbjct: 306 LDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCVIG 365

Query: 48  IPHDVFGELPAAVVVPKPN--SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMS 105
            P    GE+  A VV KP+    VT E++ ++  +++   K      F+   D +P+T S
Sbjct: 366 RPDPRRGEVVKAFVVLKPDYRGKVTEEDIIEWCRERMAAYKYPRIIEFV---DELPKTAS 422

Query: 106 GKVKRKDL 113
           GKV  + L
Sbjct: 423 GKVLWRLL 430

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 88.4 bits (220), Expect = 1e-21
 Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 16/125 (12%)

Query: 3   DDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGI 48
            DDG+  TGDL     DG + +              ISP E+E++   HP V D AV+G+
Sbjct: 361 TDDGFYRTGDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADAAVVGM 420

Query: 49  PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
           P +V GE   A VVP+  ++ T  E++ F+ +Q     +L   + +   D +P T  GKV
Sbjct: 421 PDEVLGERICAFVVPRGGAAPTLAELRAFLREQGLAKFKLPDRLEV--VDSLPLTPVGKV 478

Query: 109 KRKDL 113
            +K L
Sbjct: 479 DKKAL 483

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 87.7 bits (218), Expect = 2e-21
 Identities = 46/134 (34%), Positives = 63/134 (47%), Gaps = 30/134 (22%)

Query: 3   DDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGI 48
            DDGW  TGDL     DG   I              IS  E+E +  +HP V +VAV+ +
Sbjct: 313 TDDGWFRTGDLGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAM 372

Query: 49  PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGV-------FLCSFDFIP 101
           P +  GE   AVVVP P +S+T  E+ + +  Q         G+        L   D +P
Sbjct: 373 PDERLGERVCAVVVPAPGASLTLAELTEHLAAQ---------GLAKQKWPERLEVVDALP 423

Query: 102 RTMSGKVKRKDLNE 115
           RT SGKV++ +L E
Sbjct: 424 RTPSGKVQKFELRE 437

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 87.0 bits (216), Expect = 4e-21
 Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 23/126 (18%)

Query: 5   DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
           DGWLHTGD+A    DG ++I              + P E+E +  +HP V  VAVIG+P 
Sbjct: 392 DGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPD 451

Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQ---VNPSKRLSGGVFLCSFDFIPRTMSGK 107
           + +GE   AVVV +P ++V A E++  V+++   V+  K++    F+   D +P T  GK
Sbjct: 452 EKWGEAVTAVVVLRPGAAVDAAELQAHVKERKGSVHAPKQV---DFV---DSLPLTALGK 505

Query: 108 VKRKDL 113
             +K L
Sbjct: 506 PDKKAL 511

Length = 524

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 86.5 bits (215), Expect = 5e-21
 Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 17/129 (13%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIG 47
           +D DGWLHTGDL     +G  +I+               P E+E +  +HP V + AVIG
Sbjct: 388 IDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIG 447

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +P +  GE+  A VV KP + +T EE+  +  + +   K      FL   D +P+  +GK
Sbjct: 448 VPDERLGEVGKAYVVLKPGAELTEEELIAYCREHLAKYKVPRSIEFL---DELPKNATGK 504

Query: 108 VKRKDLNET 116
           V ++ L E 
Sbjct: 505 VLKRALREK 513

Length = 513

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 84.6 bits (210), Expect = 2e-20
 Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 22/120 (18%)

Query: 5   DGWLHTGDLAYRLPDGTHFI----------------ISPCELESIFRQHPDVEDVAVIGI 48
            GW H+GDLA   PDG  +I                IS  E+E +  +HP V + AV+  
Sbjct: 400 GGWFHSGDLAVVHPDG--YIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVAR 457

Query: 49  PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
           P + +GE P A VV KP +SVT EE+ ++  +++   K      F+     +P+T +GK+
Sbjct: 458 PDEKWGETPCAFVVLKPGASVTEEELIEYCREKLAHFKVPKTVEFVE----LPKTATGKI 513

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 84.1 bits (208), Expect = 4e-20
 Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 17/127 (13%)

Query: 5   DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
           DGWL TGDLA    DG  +I              I P E+E +  +  DV +VAV+G  H
Sbjct: 370 DGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQH 429

Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
             +GE+P A +V K +S +  ++V +     +   K     VFL     +P+  +GK+++
Sbjct: 430 VKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFLAKYKIPKEIVFL---KELPKNATGKIQK 486

Query: 111 KDLNETK 117
             L    
Sbjct: 487 AQLVNQL 493

Length = 496

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 81.9 bits (203), Expect = 1e-19
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 17/126 (13%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
           L  +  L+TGDL     +G  +               +SP E+E +   HP V + AVIG
Sbjct: 227 LPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIG 286

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +P  + G+   AVVV     S+  +E+ +     +      +  VF+ S    P+  +GK
Sbjct: 287 VPDPLLGQAIVAVVVSADGESLDEKELLKHCRKHLPNYMVPAEIVFVDSL---PKNANGK 343

Query: 108 VKRKDL 113
           V R  L
Sbjct: 344 VDRSAL 349

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 82.6 bits (205), Expect = 1e-19
 Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 37/131 (28%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
           +D DGW+HTGDLA    +G   I              I P E+E     HP ++DV V+G
Sbjct: 423 IDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVG 482

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPR----- 102
           +P + +GE   A ++ +P +++T E+V+ F   ++   K             IPR     
Sbjct: 483 VPDEKYGEEVCAWIILRPGATLTEEDVRDFCRGKIAHYK-------------IPRYIRFV 529

Query: 103 -----TMSGKV 108
                T++GK+
Sbjct: 530 DEFPMTVTGKI 540

Length = 559

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 82.1 bits (203), Expect = 2e-19
 Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 17/127 (13%)

Query: 1   MLDDDGWLHTGDLAYRLPDG--------------THFIISPCELESIFRQHPDVEDVAVI 46
           +LD DGWL TGD+A    DG              + F + P ELE +    P V   A I
Sbjct: 428 ILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAI 487

Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           G+P +  GE     VV KP  ++T E+V + +   +   K      F    D +P T  G
Sbjct: 488 GVPDEKSGEAIKVFVVVKPGETLTKEQVMEHMRANLTGYKVPKAVEFR---DELPTTNVG 544

Query: 107 KVKRKDL 113
           K+ R++L
Sbjct: 545 KILRREL 551

Length = 562

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 80.8 bits (200), Expect = 6e-19
 Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 19/126 (15%)

Query: 4   DDGWLHTGDLAYRLPDGTHF--------IIS------PCELESIFRQHPDVEDVAVIGIP 49
            DGW  TGD+ Y   +G  +        IIS      P E+E +   HP V +  V+G+P
Sbjct: 358 QDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVP 417

Query: 50  HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
            D +G++P A VV   +  VT EE++ F E+++   K      F+   + +PR  SGK+ 
Sbjct: 418 DDKWGQVPVAFVV--KSGEVTEEELRHFCEEKLAKYKVPKRFYFV---EELPRNASGKLL 472

Query: 110 RKDLNE 115
           R +L +
Sbjct: 473 RHELKQ 478

Length = 483

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 80.5 bits (199), Expect = 7e-19
 Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 17/126 (13%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
           L+ DGWLHTGD  Y   +G  +               +S  ELE+I   HP ++D+ V+G
Sbjct: 394 LEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVG 453

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           I   +  E   A VV     +++ EE   F E  +   K  S   +L     +PR  SGK
Sbjct: 454 IKDSIRDEAIKAFVVLNEGETLSEEEFFAFCEQNMAKFKVPS---YLEIRKDLPRNCSGK 510

Query: 108 VKRKDL 113
           + +K+L
Sbjct: 511 IIKKNL 516

Length = 517

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 79.6 bits (197), Expect = 1e-18
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 17/125 (13%)

Query: 5   DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
            GW H+GDL     +G   +              ++  E+E     HP V +VAVIG+P 
Sbjct: 394 GGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPD 453

Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
             + E   AVVVPK  ++VT +E+      ++   K     +F+   D +PR  SGK+ +
Sbjct: 454 PKWIEAVTAVVVPKAGATVTEDELIAHCRARLAGFKVPKRVIFV---DELPRNPSGKILK 510

Query: 111 KDLNE 115
           ++L E
Sbjct: 511 RELRE 515

Length = 523

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 79.3 bits (196), Expect = 2e-18
 Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 30/135 (22%)

Query: 3   DDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGI 48
           D DGW  TGDLA    DG   I              I   E+E++  +HP +  VA++  
Sbjct: 416 DADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAY 475

Query: 49  PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGV-------FLCSFDFIP 101
           P +  GE   A VVP+P  S+  EE+ +F++ Q          V        L   D +P
Sbjct: 476 PDERLGERACAFVVPRPGQSLDFEEMVEFLKAQ---------KVAKQYIPERLVVRDALP 526

Query: 102 RTMSGKVKRKDLNET 116
           RT SGK+++  L E 
Sbjct: 527 RTPSGKIQKFRLREM 541

Length = 547

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 78.9 bits (195), Expect = 2e-18
 Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 20/125 (16%)

Query: 6   GWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHD 51
            W  TGD  YR  DG ++               +SP E+E    QHP V + AV+G   +
Sbjct: 384 EWTRTGDKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGAEDE 443

Query: 52  VFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
                P A VV K     S     E+K FV+D++ P K      F+   D +P+T +GK+
Sbjct: 444 DGLTKPKAFVVLKDGYQPSPELETELKDFVKDKLAPYKYPRWIEFV---DELPKTATGKI 500

Query: 109 KRKDL 113
           +R  L
Sbjct: 501 QRFKL 505

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 78.9 bits (195), Expect = 2e-18
 Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 21/125 (16%)

Query: 4   DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
              W+H GD A    DG  +I              + P E+ES+   HP V + A IG+P
Sbjct: 334 PGVWVH-GDWALVDEDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVAEAAAIGVP 392

Query: 50  HDVFGELPAAVVVPKPNSSVTAE---EVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
             V GE     VV KP  + +A    E+   V D +    R     F      +P+T +G
Sbjct: 393 DPVKGEAIVCFVVLKPGVTPSAALEAELADHVGDALGKPFRPREVHF---VSDLPKTRNG 449

Query: 107 KVKRK 111
           K+ R+
Sbjct: 450 KIMRR 454

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 78.5 bits (194), Expect = 4e-18
 Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 19/122 (15%)

Query: 5   DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
             W  TGD A R  DG  ++              I P E+ES+   HP V + AV+G+P 
Sbjct: 395 GRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPD 454

Query: 51  DVFGELPAAVVVPKPNSSVT--AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
              G++  A VV          AEE+++ V   + P        F+   D +P+T SGK+
Sbjct: 455 PGKGQIVLAFVVLAAGVEPNELAEEIRRHVARNIGPHAIPRKIRFV---DELPKTASGKI 511

Query: 109 KR 110
           +R
Sbjct: 512 QR 513

Length = 528

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 78.3 bits (193), Expect = 4e-18
 Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 17/133 (12%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
           +D+DGW+HTGDLA     G   I              I P E+E     HP V DV V G
Sbjct: 424 IDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFG 483

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +P + +GE   A V   P  + + EE+++F + ++   K      F+  F   P T++GK
Sbjct: 484 VPDEKYGEEIVAWVRLHPGHAASEEELREFCKARIAHFKVPRYFRFVDEF---PMTVTGK 540

Query: 108 VKRKDLNETKVMR 120
           V++  + E  +  
Sbjct: 541 VQKFRMREISIEE 553

Length = 558

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 76.7 bits (189), Expect = 2e-17
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 20/129 (15%)

Query: 4   DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
             G+  TGD AYR  DG  +               ISP E+ES   +HP V + AV+  P
Sbjct: 306 RGGYYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAVVPSP 365

Query: 50  HDVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
             +   +P A +V KP    S   A E+   V +++ P KR+    F+     +P+T+SG
Sbjct: 366 DPIRLAVPKAYIVLKPGYEPSRELALELFAHVRERLAPYKRIRRIEFV---GELPKTISG 422

Query: 107 KVKRKDLNE 115
           K++R +L +
Sbjct: 423 KIRRVELRK 431

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 75.3 bits (186), Expect = 5e-17
 Identities = 43/132 (32%), Positives = 59/132 (44%), Gaps = 31/132 (23%)

Query: 3   DDDGWLHTGDLAYRLPDG--------THFIIS------PCELESIFRQHPDVEDVAVIGI 48
           +  GW+  GD+ Y   DG        +  IIS      P E+E++   HP V DVAV G+
Sbjct: 366 NPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGV 425

Query: 49  PHDVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLC--SFDFI--- 100
           P +  GE   AVV P          A E+  ++        RL+   + C  S DF    
Sbjct: 426 PDEEMGERVKAVVQPADGADAGDALAAELIAWLRG------RLAH--YKCPRSIDFEDEL 477

Query: 101 PRTMSGK-VKRK 111
           PRT +GK  KR+
Sbjct: 478 PRTPTGKLYKRR 489

Length = 502

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 74.6 bits (184), Expect = 8e-17
 Identities = 44/127 (34%), Positives = 58/127 (45%), Gaps = 20/127 (15%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI---------------ISPCELESIFRQHPDVEDVAVI 46
              DGW  TGD+A   PDG H I               I   E+E+    HP V + AV+
Sbjct: 346 FTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVV 405

Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           G+P D  G+   A VV      V A+E+  FV  Q++  KR     F+   D +PR   G
Sbjct: 406 GVPDDDLGQRIVAYVV--GADDVAADELIDFVAQQLSVHKRPREVRFV---DALPRNAMG 460

Query: 107 KVKRKDL 113
           KV +K L
Sbjct: 461 KVLKKQL 467

Length = 471

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 73.6 bits (181), Expect = 2e-16
 Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 17/129 (13%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
           LD++GW ++GDL      G   I              IS  E+E I  QHP + D  V+ 
Sbjct: 406 LDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVA 465

Query: 48  IPHDVFGELPAAVVVPKPN-SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           +P +  GE   A VV K    S+T EEV  F   +    K       +   D +PRT SG
Sbjct: 466 MPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKRVA-KYKYPE-HIVVIDKLPRTASG 523

Query: 107 KVKRKDLNE 115
           K+++  L +
Sbjct: 524 KIQKFLLRK 532

Length = 547

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 73.5 bits (181), Expect = 2e-16
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 23/141 (16%)

Query: 3   DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGI 48
              G+  TGD  Y+  DG  F++              S  E+E    +HPDV + AV+G+
Sbjct: 458 KFPGYYDTGDSGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGV 517

Query: 49  PHDVFGELPAAVVVPKPNSSVTAE----EVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTM 104
             ++ G++P  +VV K +  + A+    E+   V +Q+ P       VF+     +P+T 
Sbjct: 518 RDELKGQVPLGLVVLKDDCKIDADQLENEIVALVREQIGPVAAFRNVVFV---KRLPKTR 574

Query: 105 SGKVKRKDLNETKVMRHDDVT 125
           SGK+ R+ L   K+   +D  
Sbjct: 575 SGKILRRTL--RKIADGEDYK 593

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 73.2 bits (180), Expect = 3e-16
 Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 26/129 (20%)

Query: 5   DGWLHTGDLAYRLPDG-THFI-------------ISPCELESIFRQHPDVEDVAVIGIPH 50
           DGWLHTGD+      G  H++             + P E+E++  QHP V   AV+G P 
Sbjct: 441 DGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPD 500

Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSK----RLSGGVFLCSFDFIPRTMSG 106
              G++P A V  KP + +TA  ++ +  + +   K    R+         D +P T +G
Sbjct: 501 PDKGQVPVAFVQLKPGADLTAAALQAWCRENMAVYKVPEIRI--------VDALPMTATG 552

Query: 107 KVKRKDLNE 115
           KV+++DL  
Sbjct: 553 KVRKQDLQA 561

Length = 567

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 72.8 bits (179), Expect = 3e-16
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 17/125 (13%)

Query: 5   DGWLHTGDLAYRLPDGTHFI--------IS------PCELESIFRQHPDVEDVAVIGIPH 50
           DGW  TGDL +    G  +I        IS      P E+E     HP V +VAV+G+P 
Sbjct: 393 DGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPD 452

Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
            V+GE+  AV V +  + V   E+  +++ +V    +L    F   +D +P++  GK+ +
Sbjct: 453 PVWGEVGVAVCVARDGAPVDEAELLAWLDGKV-ARYKLPKRFFF--WDALPKSGYGKITK 509

Query: 111 KDLNE 115
           K + E
Sbjct: 510 KMVRE 514

Length = 528

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 72.8 bits (179), Expect = 4e-16
 Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 20/126 (15%)

Query: 5   DGWLHTGDLAYRLPDG--------------THFIISPCELESIFRQHPDVEDVAVIGIPH 50
             W  TGD A +  DG              + + I P E+ES   +HP V + AV+G P 
Sbjct: 306 GDWYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGSPD 365

Query: 51  DVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
            V GE+  A VV  P    S   A+E+++ V+ +  P K      F+     +P+T+SGK
Sbjct: 366 PVRGEVVKAFVVLAPGYQPSEELAKELQEHVKKRTAPYKYPREIEFVEE---LPKTVSGK 422

Query: 108 VKRKDL 113
           ++R +L
Sbjct: 423 IRRVEL 428

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 71.4 bits (175), Expect = 1e-15
 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 17/130 (13%)

Query: 1   MLDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVI 46
               DGW  TGD+A R  DG  +++               P E+E++   HP + + AV+
Sbjct: 356 AFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVV 415

Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           G+    +GE+    +VP   + +  E ++  +  ++   K +   + L   D +PRT SG
Sbjct: 416 GMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTRLAKYK-VPKHLRLV--DALPRTASG 472

Query: 107 KVKRKDLNET 116
           K+++  L + 
Sbjct: 473 KLQKARLRDA 482

Length = 488

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 20/123 (16%)

Query: 5   DGWLHTGDLAYRLPDGTHF--------------IISPCELESIFRQHPDVEDVAVIGIPH 50
           DGWL TGD   R  DG +                +SP E+E+   +HP V + AV+ +P 
Sbjct: 313 DGWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAVVAVPD 372

Query: 51  DVFGELPAAVVVPKP---NSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +       A VVP+P      +   ++ +F+ +++ P K      FL   D +PRT +GK
Sbjct: 373 EDGLVRLKAFVVPRPGEAIQQLLERDLHRFLRERLAPYKCPRQIEFL---DTLPRTATGK 429

Query: 108 VKR 110
           ++R
Sbjct: 430 LQR 432

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 71.3 bits (175), Expect = 1e-15
 Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 17/130 (13%)

Query: 1   MLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVI 46
           +LDDDG+  TGD+A     G   I              IS  +LE++   HP V + AVI
Sbjct: 405 ILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVI 464

Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           G+ H  + E P  +V  KP  + T EE+ ++++ ++          F+   D IP T +G
Sbjct: 465 GVYHPKWDERPLLIVQLKPGETATREEILKYMDGKIAKWWMPDDVAFV---DAIPHTATG 521

Query: 107 KVKRKDLNET 116
           K+ +  L E 
Sbjct: 522 KILKTALREQ 531

Length = 542

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 20/126 (15%)

Query: 5   DGWLHTGDLAYRLPDG--------------THFIISPCELESIFRQHPDVEDVAVIGIPH 50
             WL TGDL  R  DG              + + I P E+E    +HP V + AV+G+P 
Sbjct: 315 GDWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPD 374

Query: 51  DVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
              GE+  A VV       S   A E+++ V+ ++   +      F+   D +P T +GK
Sbjct: 375 PERGEIVKAFVVLAEGVEPSDELATELQELVKSRLAAHEYPREIEFV---DELPMTTTGK 431

Query: 108 VKRKDL 113
           ++R++L
Sbjct: 432 IRRREL 437

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 69.8 bits (171), Expect = 4e-15
 Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 17/123 (13%)

Query: 5   DGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPH 50
           DG++ +GD+ Y   +G  F++               P E+E     HPDV + AVIG+  
Sbjct: 415 DGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDD 474

Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
           + +G+  AA VV KP +S T E +KQ V D +   K     V L   D +PR  +GK+ R
Sbjct: 475 EQYGQRLAAFVVLKPGASATPETLKQHVRDNLANYKVPRDIVVL---DELPRGATGKILR 531

Query: 111 KDL 113
           ++L
Sbjct: 532 REL 534

Length = 537

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 69.8 bits (171), Expect = 4e-15
 Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 18/127 (14%)

Query: 4   DDGWLHTGDLAYRLPDG--------THFIISP-----C-ELESIFRQHPDVEDVAVIGIP 49
             GW H+GDL  +  +G           IIS      C E+E++   HPD+ +VAVIG  
Sbjct: 397 AGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRA 456

Query: 50  HDVFGELPAAVVVPKP-NSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
            + +GE+P AV   +  ++++T E++ +F+ D++   K       L   D +PR  +GKV
Sbjct: 457 DEKWGEVPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPK---ALEIVDALPRNPAGKV 513

Query: 109 KRKDLNE 115
            + +L E
Sbjct: 514 LKTELRE 520

Length = 542

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 69.8 bits (171), Expect = 5e-15
 Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 21/123 (17%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
           L+ DGW+   D+ Y   +G  +I              I P E+ES+  +HP V+++ VIG
Sbjct: 357 LNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIG 416

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +P   +GE P A++      S T +++K F   +++  K      F+   D IP T SGK
Sbjct: 417 VPDSYWGEKPVAII----KGSATKQQLKSFCLQRLSSFKIPKEWHFV---DEIPYTNSGK 469

Query: 108 VKR 110
           + R
Sbjct: 470 IAR 472

Length = 487

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 69.3 bits (170), Expect = 5e-15
 Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 16/126 (12%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
             +DGWL+TGDL     DG  ++              I P  +E    +HP V   A +G
Sbjct: 230 RLEDGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALAAAVG 289

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
            P    GELP A V  KP ++VT  E+  FV+ ++     +   +++   D +P T  GK
Sbjct: 290 RPDAYAGELPVAYVQLKPGATVTEGELLAFVKARIPERAAVPKAIYI--IDALPLTAVGK 347

Query: 108 VKRKDL 113
           + +  L
Sbjct: 348 IFKPRL 353

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 69.2 bits (170), Expect = 6e-15
 Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 16/94 (17%)

Query: 4   DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
           +DGWL+TGDL     DG  ++              I P  +E    +HP V   A +G P
Sbjct: 443 EDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRP 502

Query: 50  HDVF-GELPAAVVVPKPNSSVTAEEVKQFVEDQV 82
            D   GELP A V  KP +S T  E+  F  D +
Sbjct: 503 -DAHAGELPVAYVQLKPGASATEAELLAFARDHI 535

Length = 632

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 68.7 bits (168), Expect = 1e-14
 Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 20/123 (16%)

Query: 5   DGWLHTGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPH 50
           DGW  TGD+  +  DG  H++             I+  E+E     HPDV + AVIG+P 
Sbjct: 364 DGWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVIGVPD 423

Query: 51  DVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +  G++  A +V +     + + AE ++ FV+  + P K      F+   D +P+T +GK
Sbjct: 424 EERGQIVCAHIVLRDGTKATELLAERLQDFVKAVIAPYKYPREINFV---DALPKTQTGK 480

Query: 108 VKR 110
           ++R
Sbjct: 481 IQR 483

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 68.2 bits (167), Expect = 1e-14
 Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 26/127 (20%)

Query: 4   DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
              W  TGDL  R  DG  +               I P ++ES   +HP V + AV+G+P
Sbjct: 315 AGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVAEAAVVGVP 374

Query: 50  HDVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFI---PRT 103
             + GE+  A VV K     S   AEE++ FV+      KRLS   +    +F+   P+T
Sbjct: 375 DPLRGEIVKAFVVLKEGYAGSDELAEELQLFVK------KRLSAHAYPREVEFVPALPKT 428

Query: 104 MSGKVKR 110
            SGK++R
Sbjct: 429 PSGKIQR 435

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 42/125 (33%), Positives = 53/125 (42%), Gaps = 29/125 (23%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFIIS------PCELESIFRQHPDVEDVAVIGIPHDVFGE 55
           +D+DG+L+  D A         IIS      P E E++   HP V D AV G+P++  GE
Sbjct: 392 VDEDGYLYLTDRA------AFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGE 445

Query: 56  LPAAVVVPKPNSSVT---AEEVKQFVEDQVNPSKRLSGGVFLC--SFDFI---PRTMSGK 107
              AVV P          A E+  F         RLS     C  S DF    PR  +GK
Sbjct: 446 EVKAVVQPVDGVDPGPALAAELIAFCRQ------RLSR--QKCPRSIDFEDELPRLPTGK 497

Query: 108 -VKRK 111
             KR 
Sbjct: 498 LYKRL 502

Length = 511

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 67.6 bits (166), Expect = 2e-14
 Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 17/126 (13%)

Query: 5   DGWLHTGDLAYRLPDGTHF--------IIS------PCELESIFRQHPDVEDVAVIGIPH 50
           DG L +GD+ Y   DG  F        I+S      P E+E +   HPDV + AVIG+  
Sbjct: 426 DGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDD 485

Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
           + FG+   A VV  P +++  + +K +V D +   K     VFL   D +PR  +GKV +
Sbjct: 486 EEFGQRLRAFVVKAPGAALDEDAIKDYVRDNLARYKVPRDVVFL---DELPRNPTGKVLK 542

Query: 111 KDLNET 116
           ++L E 
Sbjct: 543 RELREM 548

Length = 549

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 67.6 bits (165), Expect = 3e-14
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 14/94 (14%)

Query: 5   DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
           DGWL TGDL      G   I              ISP  +E +   HP+V + AV G+P 
Sbjct: 407 DGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPD 466

Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNP 84
            ++GE  AAV+VP+ ++  TAEE+ QF  +++  
Sbjct: 467 QLYGEAVAAVIVPRESAPPTAEELVQFCRERLAA 500

Length = 534

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 66.7 bits (163), Expect = 4e-14
 Identities = 44/129 (34%), Positives = 57/129 (44%), Gaps = 26/129 (20%)

Query: 5   DGWLHTGDLAYRLPDGTH-FI-------------ISPCELESIFRQHPDVEDVAVIGIPH 50
           DGW  TGDLAYR  DG   F+             + P E+ES   +HP V +  VIG P 
Sbjct: 319 DGWYLTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAGVIGKPD 378

Query: 51  DVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDF---IPRTM 104
            V GE+  A V  +P    S     E+  F        +RL   V      F   +P+T 
Sbjct: 379 PVAGEIVKAFVSLRPGFEPSEELRRELLTFAR------QRLGAAVAPREIHFVDNLPKTR 432

Query: 105 SGKVKRKDL 113
           SGK+ R+ L
Sbjct: 433 SGKIMRRLL 441

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 66.9 bits (164), Expect = 5e-14
 Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 18/120 (15%)

Query: 5   DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
            GW HTGDLA   PDG   I              IS  E+E +  +HP V   AV+  P 
Sbjct: 415 GGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPD 474

Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
             +GE+P A V  K  +S T EE+     + +   K     V    F  +P+T +GK+++
Sbjct: 475 PKWGEVPCAFVELKDGASATEEEIIAHCREHLAGFKVPKAVV----FGELPKTSTGKIQK 530

Length = 545

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 66.6 bits (163), Expect = 5e-14
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 25/130 (19%)

Query: 5   DGWLHTGDLAYRLPDGTHFI----------------ISPCELESIFRQHPDVEDVAVIGI 48
           DGW  TGD+     DG  FI                + P E+E + R+HP VED AV+G+
Sbjct: 444 DGWFRTGDVVVMEEDG--FIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGL 501

Query: 49  PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSK--RLSGGVFLCSFDFIPRTMSG 106
           P +   E   A VV +P +++  E ++ +  + +   K  R          D +PR   G
Sbjct: 502 PREDGSEEVVAAVVLEPGAALDPEGLRAYCREHLTRYKVPRR-----FYHVDELPRDQLG 556

Query: 107 KVKRKDLNET 116
           KV+R+++ E 
Sbjct: 557 KVRRREVREE 566

Length = 573

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 66.4 bits (162), Expect = 6e-14
 Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 18/124 (14%)

Query: 5   DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
           DGW  T D+A   P GT  I              I P E+E +  + P V +V VIG+P 
Sbjct: 375 DGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGLPD 434

Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVED-QVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
           + +G+   A VVP+   +++A+ +  F    ++   KR     FL   D +P+    KV 
Sbjct: 435 ERWGQSVTACVVPREGETLSADALDTFCRASELADFKRPRRYFFL---DELPKNAMNKVL 491

Query: 110 RKDL 113
           R+ L
Sbjct: 492 RRQL 495

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 66.1 bits (162), Expect = 7e-14
 Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 27/132 (20%)

Query: 4   DDGWLHTGDLAYRLPDG--------THFIIS------PCELESIFRQHPDVEDVAVIGIP 49
            DG+  TGDL      G           IIS      P E+E    + P V + AVIG+P
Sbjct: 375 ADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVP 434

Query: 50  HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQV----NPSKRLSGGVFLCSFDFIPR-TM 104
           H  FGE   AVVVPKP +++    +   ++ ++     P KR+    F+   D +PR TM
Sbjct: 435 HPDFGEGVTAVVVPKPGAALDEAAILAALKGRLARFKQP-KRV---FFV---DELPRNTM 487

Query: 105 SGKVKRKDLNET 116
            GKV++  L E 
Sbjct: 488 -GKVQKNLLREQ 498

Length = 504

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 65.5 bits (160), Expect = 1e-13
 Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 17/127 (13%)

Query: 4   DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
            DGW  TGD+A    DG   I              IS  ++E++   HP V + A I   
Sbjct: 407 VDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACA 466

Query: 50  HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
           H  + E P  VVV +P + VT EE+  F E +V         VF+   D IP T +GK++
Sbjct: 467 HPKWDERPLLVVVKRPGAEVTREELLAFYEGKVAKWWIPDDVVFV---DAIPHTATGKLQ 523

Query: 110 RKDLNET 116
           +  L E 
Sbjct: 524 KLKLREQ 530

Length = 539

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 64.9 bits (159), Expect = 2e-13
 Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 20/122 (16%)

Query: 6   GWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHD 51
           G+  TGD A R  DG ++I              +   E+ES    HP V + AV+G P +
Sbjct: 463 GYYFTGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDE 522

Query: 52  VFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
           V GE   A V  K     S    +E+K+ V  ++ P       +F      +P+T SGK+
Sbjct: 523 VKGEAIYAFVTLKDGVEPSDELRKELKKHVRKEIGPIATPDEIIF---VPGLPKTRSGKI 579

Query: 109 KR 110
            R
Sbjct: 580 MR 581

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 64.3 bits (157), Expect = 4e-13
 Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 20/134 (14%)

Query: 5   DGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPH 50
           DGWL TGD+A    +G   I+               P E+E +   HP V +VA +G+P 
Sbjct: 431 DGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPS 490

Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSF-DFIPRTMSGKVK 109
           +V GE     VV K + S+T EE+       +   K       L  F D +P++  GK+ 
Sbjct: 491 EVSGEAVKIFVVKK-DPSLTEEELITHCRRHLTGYKVPK----LVEFRDELPKSNVGKIL 545

Query: 110 RKDLNETKVMRHDD 123
           R++L +    + D+
Sbjct: 546 RRELRDEARAKVDN 559

Length = 560

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 63.5 bits (154), Expect = 8e-13
 Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 17/123 (13%)

Query: 5   DGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPH 50
           DG   TGD+ Y    G  FI+               P  +E+    HP V D AVIG+P 
Sbjct: 395 DGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPD 454

Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
           + FG   AA VV  P S V A +++ +++D+V+  ++      + S   IPR  +GKV R
Sbjct: 455 ERFGHRLAAFVVLHPGSGVDAAQLRDYLKDRVSRFEQPRDINIVSS---IPRNPTGKVLR 511

Query: 111 KDL 113
           K+L
Sbjct: 512 KEL 514

Length = 516

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 30/140 (21%)

Query: 2   LDDDGWLHTGDLAYRLPDGT-HF-------IIS------PCELESIFRQHPDVEDVAVIG 47
           LD  G   T DL Y    G  H        II+      P E+E+       V+DV V+G
Sbjct: 320 LDSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLG 379

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSK------RLSGGVFLCSFDFIP 101
           +P   +GE+  A+ VPK + S++ EE+K  ++DQ++P K       +           +P
Sbjct: 380 LPDPHWGEVVTAIYVPK-DPSISLEELKTAIKDQLSPFKQPKHWIPVPQ---------LP 429

Query: 102 RTMSGKVKRKDLNETKVMRH 121
           R   GK+ R+ L +  V R 
Sbjct: 430 RNPQGKINRQQLQQIAVQRL 449

Length = 452

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 62.6 bits (152), Expect = 1e-12
 Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 26/132 (19%)

Query: 3   DDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGI 48
           D +GW  TGDLA++  +G   I              I   E+E++  QHP V  VA++  
Sbjct: 414 DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAY 473

Query: 49  PHDVFGELPAAVVVPKPNSSVTAEEVKQF-----VEDQVNPSKRLSGGVFLCSFDFIPRT 103
           P +  GE   AVVVPKP  ++    +  F     V  Q  P +       L   D +P T
Sbjct: 474 PDERLGERACAVVVPKPGCTLDFAAMVAFLKAQKVALQYIPER-------LEVVDALPAT 526

Query: 104 MSGKVKRKDLNE 115
            +GK+++  L E
Sbjct: 527 PAGKIQKFRLRE 538

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 62.6 bits (153), Expect = 1e-12
 Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 26/129 (20%)

Query: 5   DGWLHTGDLAYRLPDGTH-FI-------------ISPCELESIFRQHPDVEDVAVIGIPH 50
             W  +GD AY   DG   F              + P E+ES   +HP V +  VIG P 
Sbjct: 431 GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPD 490

Query: 51  DVFGELPAAVVVPKPNSSVTAE---EVKQFVEDQVNPSKRLSGGVFLCSFDF---IPRTM 104
            V GE+  A V  +P    + E   E++ FV+      K L         +F   +P+T 
Sbjct: 491 PVRGEIIKAFVALRPGYEPSEELKEEIRGFVK------KGLGAHAAPREIEFKDKLPKTR 544

Query: 105 SGKVKRKDL 113
           SGK+ R+ L
Sbjct: 545 SGKIMRRVL 553

Length = 570

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 62.4 bits (151), Expect = 2e-12
 Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 17/133 (12%)

Query: 5   DGWLHTGDLAYRLPDG--------------THFIISPCELESIFRQHPDVEDVAVIGIPH 50
           DGWLHTGD+ Y   DG              + F + P E+E +  +H  V++V  IG+P 
Sbjct: 430 DGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPD 489

Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
              GE   A VV K  +  + EE+ QF    +   K      F    D +P+T  GK+ R
Sbjct: 490 PYRGETVKAFVVLKEGTECSEEELNQFARKYLAAYKVPKVYEFR---DELPKTTVGKILR 546

Query: 111 KDLNETKVMRHDD 123
           + L E +  +++D
Sbjct: 547 RVLIEEEKRKNED 559

Length = 563

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 61.7 bits (151), Expect = 2e-12
 Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 29/122 (23%)

Query: 10  TGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
           TGDLA  LPDG   F+             I   E+E+    HP V +  V+        +
Sbjct: 331 TGDLARWLPDGNLEFLGRADDQVKIRGYRIELGEIEAALLAHPGVREAVVVAREDGAGEK 390

Query: 56  LPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRL------SGGVFLCSFDFIPRTMSGKVK 109
              A VVP   + + A E++ F+      ++RL      S  V L   D +P T +GKV 
Sbjct: 391 RLVAYVVPAAGAELDAAELRAFL------AERLPDYMVPSAFVVL---DALPLTPNGKVD 441

Query: 110 RK 111
           RK
Sbjct: 442 RK 443

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 61.7 bits (150), Expect = 2e-12
 Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 19/125 (15%)

Query: 3   DDDGWLHTGDLAYRLPDG--------THFIIS------PCELESIFRQHPDVEDVAVIGI 48
           +  GW +TGD+     +G           IIS      P E+E++  QHP +++  V+  
Sbjct: 317 EQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPK 376

Query: 49  PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
           P   +G++P A +V    S ++  ++  ++ +++   K     +     D +P   SGK+
Sbjct: 377 PDAEWGQVPVAYIV--SESDISQAKLIAYLTEKLAKYKV---PIAFEKLDELPYNASGKI 431

Query: 109 KRKDL 113
            R  L
Sbjct: 432 LRNQL 436

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 61.0 bits (148), Expect = 5e-12
 Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 23/127 (18%)

Query: 6   GWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHD 51
           GW H+GDL  + PDG   I              IS  E+E++   HP V + +V+  P +
Sbjct: 430 GWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDE 489

Query: 52  VFGELPAAVVVPKP-----NSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
            +GE P A V  KP     + +  AE++ +F  +++ P+  +   V    F  +P+T +G
Sbjct: 490 RWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERL-PAYWVPKSVV---FGPLPKTATG 545

Query: 107 KVKRKDL 113
           K+++  L
Sbjct: 546 KIQKHVL 552

Length = 567

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 60.6 bits (147), Expect = 7e-12
 Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 18/128 (14%)

Query: 2   LDDDGWLHTGDLAYRLPDG--------------THFIISPCELESIFRQHPDVEDVAVIG 47
           LD +GW  TGD+A   PDG              + F + P E+E +   HP V + A IG
Sbjct: 437 LDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIG 496

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +P +  GE     VV + +  ++ EE+K + ++     K     V     D +P T  GK
Sbjct: 497 VPDERSGEAVKLFVVAR-DPGLSVEELKAYCKENFTGYKVPKHIVLR---DSLPMTPVGK 552

Query: 108 VKRKDLNE 115
           + R++L +
Sbjct: 553 ILRRELRD 560

Length = 562

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 60.0 bits (145), Expect = 1e-11
 Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 24/145 (16%)

Query: 6   GWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHD 51
           GWL+TGD+    PDG   I              IS  E+E++  ++P V + AV+ +PH 
Sbjct: 420 GWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHP 479

Query: 52  VFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSK--RLSGGVFLCS-----FDFIPRTM 104
            +GE P A VV +   +   + V + V  + +  +  R +   F+C         +P+  
Sbjct: 480 TWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNG 539

Query: 105 SGKV---KRKDLNETKVMRHDDVTR 126
           +GK+   K +D+ +  V+  +D   
Sbjct: 540 NGKILKPKLRDIAKGLVVEDEDNVI 564

Length = 579

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 17/135 (12%)

Query: 5   DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
            G   +GDLAYR  DG  +               +    +E I  ++PD  +VAV  +P 
Sbjct: 380 GGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPD 439

Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPS-KRLSGGVFLCSFDFIPRTMSGKVK 109
            V G+   A +V  P +    +   +F+  Q +   K+    V +C    +PRT + KV 
Sbjct: 440 PVVGDQVMAALVLAPGAKFDPDAFAEFLAAQPDLGPKQWPSYVRVC--AELPRTATFKVL 497

Query: 110 RKDLNETKVMRHDDV 124
           ++ L+   V   D V
Sbjct: 498 KRQLSAEGVDCADPV 512

Length = 529

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 58.7 bits (143), Expect = 3e-11
 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 27/122 (22%)

Query: 10  TGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
           TGDLA   PDG   F+             I   E+E    QHP V + AV+        +
Sbjct: 362 TGDLARWRPDGNIEFLGRIDRQVKIRGFRIELGEIEQALLQHPGVREAAVLVREDAAGDK 421

Query: 56  LPAAVVVPKPNSSVTAEEVKQFVEDQVN----PSKRLSGGVFLCSFDFIPRTMSGKVKRK 111
              A VV +   ++ A E++  + +++     P+            D +P T +GKV R+
Sbjct: 422 RLVAYVVARG--ALDAAELRAHLAERLPAYMVPA-------AFVVLDELPLTANGKVDRR 472

Query: 112 DL 113
            L
Sbjct: 473 AL 474

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 20/121 (16%)

Query: 10  TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
           TGD A R  DG  +I              +   E+ES    HP V + AV+GIP D+ G+
Sbjct: 479 TGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQ 538

Query: 56  LPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKD 112
              A V  K          +E+++ V  ++ P  +     F      +P+T SGK+ R+ 
Sbjct: 539 AIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRF---VPGLPKTRSGKIMRRL 595

Query: 113 L 113
           L
Sbjct: 596 L 596

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 58.9 bits (143), Expect = 3e-11
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 19/81 (23%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI---------------ISPCELESIFRQHPDVEDVAVI 46
             +DGW  TGDL     DG   I               I+P  +ES   + P +E + V+
Sbjct: 445 FTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVV 504

Query: 47  GIPHDVFGELPAAVVVPKPNS 67
           G           A++VP  ++
Sbjct: 505 GDDKK----FLVALIVPDFDA 521

Length = 613

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 58.6 bits (142), Expect = 3e-11
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 20/130 (15%)

Query: 5   DGWLHTGDLAYRLPDG--------------THFIISPCELESIFRQHPDVEDVAVIGIPH 50
           DG+ HTGD A+   DG              + + I P E+ES   QHP V + AV G+P 
Sbjct: 411 DGYYHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVTGVPD 470

Query: 51  DVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
            + G++  A +V       S    +E++  V+    P K      F+   D +P+T+SGK
Sbjct: 471 PIRGQVVKATIVLTKGYEPSEELKKELQDHVKKVTAPYKYPRIIEFV---DELPKTISGK 527

Query: 108 VKRKDLNETK 117
           ++R ++ E  
Sbjct: 528 IRRVEIREKD 537

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 58.3 bits (141), Expect = 5e-11
 Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 18/129 (13%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIG 47
           +D DGWLHTGD+A     G  +I+               P E+E +    P V +VA +G
Sbjct: 433 MDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVG 492

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +P +  GE+   V+V K + ++TAE+VK      +   K+     F      +P+T  GK
Sbjct: 493 VPDEKSGEIVKVVIV-KKDPALTAEDVKAHARANLTGYKQPRIIEFRKE---LPKTNVGK 548

Query: 108 VKRKDLNET 116
           + R++L + 
Sbjct: 549 ILRRELRDA 557

Length = 560

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 56.8 bits (138), Expect = 1e-10
 Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 47/156 (30%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVI 46
            D+DGW HTGD+   LPDGT  II               +  +LE+I++  P V+ + V 
Sbjct: 375 FDEDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVY 434

Query: 47  GIPHDVFGELPAAVVVP-------------KPNSSVTA----EEVKQFVEDQVNPSKRLS 89
           G     F     A+VVP                         +++K+ +   +N   + +
Sbjct: 435 GDSLKSF---LVAIVVPDEDVLEKWAAENGGGGGDFEELCNNKKLKKAILKDLNEIGKEN 491

Query: 90  G--------GVFLCSFDFIPR----TMSGKVKRKDL 113
           G         + L    F P     T + K+KR  L
Sbjct: 492 GLKGFEIVKAIHLTPEPFTPENGLLTPTFKLKRPQL 527

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 56.8 bits (137), Expect = 2e-10
 Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 27/128 (21%)

Query: 5   DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
             W  +GD+ Y   +G  ++              I+  E+E +  + P+V + AVIG+  
Sbjct: 372 GDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHD 431

Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVF-----LCSFDFIPRTMS 105
           D +GE   AVVV  P +++T E + +         +RL+   F     L   D +PR  S
Sbjct: 432 DRWGERITAVVVLNPGATLTLEALDRHCR------QRLAS--FKVPRQLKVRDELPRNPS 483

Query: 106 GKVKRKDL 113
           GKV ++ L
Sbjct: 484 GKVLKRVL 491

Length = 497

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 23/131 (17%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
           +D  G++ +GD+ Y   DG  F+              I P E+E++    P V D AV G
Sbjct: 375 IDRGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFG 434

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDF---IPRTM 104
           IP   FGE   AVV P+P +++   +++  ++       RL+G       +    +PR  
Sbjct: 435 IPDAEFGEALMAVVEPQPGATLDEADIRAQLK------ARLAGYKVPKHIEIMAELPRED 488

Query: 105 SGKVKRKDLNE 115
           SGK+ ++ L +
Sbjct: 489 SGKIFKRRLRD 499

Length = 509

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 33/119 (27%)

Query: 11  GDLAYRLPDGTHFI----------------ISPCELESIFRQHPDVEDVAVIGIPHDVFG 54
           GD A    DGT  I                + P E+E   + HPDV D  V+G+P + +G
Sbjct: 413 GDRARVEADGT--ITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWG 470

Query: 55  ELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGG------VFLCSFDFIPRTMSGK 107
           +   AVV  +  +     E++            L+G        F+   D + R+ +GK
Sbjct: 471 QEVVAVVQLREGARPDLAELRAHC------RSSLAGYKVPRAIWFV---DEVQRSPAGK 520

Length = 533

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 55.4 bits (134), Expect = 5e-10
 Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 19/138 (13%)

Query: 5   DGWLHTGDLAYRLPDGTHFI----------------ISPCELESIFRQHPDVEDVAVIGI 48
            G   +GDLAYR  DG  +I                +S   +E I  +HP +  VAV  +
Sbjct: 379 HGMYWSGDLAYRDADG--WIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAV 436

Query: 49  PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
           P +  G+   A +V +  ++   +    F+  Q +   +        + D +P T + KV
Sbjct: 437 PDERVGDQVMAALVLRDGATFDPDAFAAFLAAQPDLGTKAWPRYVRIAAD-LPSTATNKV 495

Query: 109 KRKDLNETKVMRHDDVTR 126
            +++L        D VT 
Sbjct: 496 LKRELIAQGWATGDPVTL 513

Length = 540

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 55.5 bits (134), Expect = 5e-10
 Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 25/134 (18%)

Query: 2   LDDDGWLHTGDLAYRLPDGTH--------------FIISPCELESIFRQHPDVEDVAVIG 47
           L DDG+  TGDL Y   DG                F+++P E+E      P V    V+G
Sbjct: 402 LTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVG 461

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
              D     P A V+P   +S     +     + +   K  +    + +F   P T S  
Sbjct: 462 ATRDGKTV-PVAFVIPTDGASPDEAGLMAACREALAGFKVPARVQVVEAF---PVTESA- 516

Query: 108 VKRKDLNETKVMRH 121
                 N  K+ +H
Sbjct: 517 ------NGAKIQKH 524

Length = 540

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.2 bits (133), Expect = 5e-10
 Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 20/127 (15%)

Query: 4   DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
            DGWL TGD+     DG   I              I   +LE+     P+V + AVIG P
Sbjct: 428 ADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYP 487

Query: 50  HDVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
            D +GE P AV V  P    +  TAE ++  + D++ P+  L    +    D I +T  G
Sbjct: 488 DDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRL-PNWMLPE--YWTFVDEIDKTSVG 544

Query: 107 KVKRKDL 113
           K  +KDL
Sbjct: 545 KFDKKDL 551

Length = 576

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 55.1 bits (133), Expect = 5e-10
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 17/126 (13%)

Query: 7   WLHTGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDV 52
           W HTGD   R  DG   F+             IS  E+E +   HP V   AV  +P ++
Sbjct: 401 WFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSEL 460

Query: 53  FGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKD 112
             +   A VV +  +++    + +  E ++      +   ++     +P+T +GKV++  
Sbjct: 461 GEDEVMAAVVLRDGTALEPVALVRHCEPRL---AYFAVPRYVEFVAALPKTENGKVQKFV 517

Query: 113 LNETKV 118
           L E  V
Sbjct: 518 LREQGV 523

Length = 542

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 18/127 (14%)

Query: 5   DGWLHTGDLAYRLPDG--------------THFIISPCELESIFRQHPDVEDVAVIGIPH 50
           DG+  TGD+      G              + F + P E+E +   HP V +VA +G+P 
Sbjct: 434 DGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPD 493

Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
           +  GE     VV K + ++T E+VK F ++++   KR     F      +P+T  GK+ R
Sbjct: 494 EHSGEAVKLFVVKK-DPALTEEDVKAFCKERLTNYKRPKFVEFRTE---LPKTNVGKILR 549

Query: 111 KDLNETK 117
           ++L + K
Sbjct: 550 RELRDGK 556

Length = 557

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 16/60 (26%)

Query: 2   LDDDGWL--HTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAV 45
             +DGW    TGDL     DG   I              I P E+E++  +HP V + AV
Sbjct: 353 FVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 29/122 (23%)

Query: 7   WLHTGDLAYRLPDGTHFII---SPC-----------ELESIFRQHPDVEDVAVIGIPHDV 52
           +   GD A    DGT  ++   S C           E+E   + HPDV D  V+G+P + 
Sbjct: 247 YAVPGDFARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDER 306

Query: 53  FGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGG------VFLCSFDFIPRTMSG 106
           +G+   AVV  +  + +   E++          + L+G       V +   D +PR  SG
Sbjct: 307 WGQRVVAVVQLRAGAGLDLAELRDHC------RQHLAGYKLPRAIVVV---DTVPRAPSG 357

Query: 107 KV 108
           K 
Sbjct: 358 KA 359

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 53.3 bits (128), Expect = 2e-09
 Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 22/128 (17%)

Query: 6   GWLHTGDLAYRLPDGTH--------------FIISPCELESIFRQHPDVEDVAVIGIPHD 51
            W  +GD   R  DG++                +SP E+ES   QHP V + AV+G+  D
Sbjct: 384 EWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGV-ED 442

Query: 52  VFGEL-PAAVVVPKPNSSVTA---EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
             G + P A +V +P   +      E+K+ V+D++ P K     VF+   D +P+T +GK
Sbjct: 443 EDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRWIVFV---DDLPKTATGK 499

Query: 108 VKRKDLNE 115
           ++R  L E
Sbjct: 500 IQRFKLRE 507

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 26/125 (20%)

Query: 7   WLHTGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDV 52
              TGDL    PDGT  F+             +   E+E+   +HP V+   V+ +    
Sbjct: 360 LYRTGDLGRYRPDGTIEFLGRADHQVKIRGYRVELGEIEAALARHPGVQRAVVVVVGDGG 419

Query: 53  FGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPS----KRLSGGVFLCSFDFIPRTMSGKV 108
              L AA VV +  ++V A  ++  + + + P+     R    V L +    P T +GKV
Sbjct: 420 AKAL-AAFVVAEDGAAVDAAVLRAALAELL-PAYMVPSRF---VVLDAL---PLTANGKV 471

Query: 109 KRKDL 113
            RK L
Sbjct: 472 DRKAL 476

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 23/126 (18%)

Query: 8   LHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVF 53
             TGDL     +G  FI                P E+E++  +HP +++  VI  P    
Sbjct: 418 FRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRR 477

Query: 54  GELPAAVVVPKPNS--SVTAEEVKQFVEDQVNPSK--RLSGGVFLCSFDFIPRTMSGKVK 109
           GE   AVVV +P +    T EE+  +  + +   K  R+   V     D +P++ SGK+ 
Sbjct: 478 GETVKAVVVLRPEARGKTTEEEIIAWAREHMAAYKYPRIVEFV-----DSLPKSGSGKIL 532

Query: 110 RKDLNE 115
            + L E
Sbjct: 533 WRQLQE 538

Length = 546

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 52.4 bits (126), Expect = 4e-09
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 19/128 (14%)

Query: 3   DDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGI 48
           D DG+  +GDL  R PDG   +              I+  E+E++  +HP V D A++ +
Sbjct: 411 DADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAM 470

Query: 49  PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQ-VNPSKRLSGGVFLCSFDFIPRTMSGK 107
           P ++ GE   A +V K    + A ++++F+ ++ +   K      F+ S    P T  GK
Sbjct: 471 PDELLGEKSCAFIVVKE-PPLRAAQLRRFLRERGLAAFKLPDRIEFVDSL---PLTAVGK 526

Query: 108 VKRKDLNE 115
           + +K L  
Sbjct: 527 IDKKALRR 534

Length = 542

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 51.8 bits (125), Expect = 8e-09
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 19/81 (23%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI---------------ISPCELESIFRQHPDVEDVAVI 46
           LD+DGWLHTGD+     DG   I               I+P  +E+  +  P +    V+
Sbjct: 307 LDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVV 366

Query: 47  GIPHDVFGELPAAVVVPKPNS 67
           G           A++V  P +
Sbjct: 367 GDDR----PYLTALIVLDPEA 383

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 17/125 (13%)

Query: 3   DDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGI 48
           D +G+ +TGDL    P+G   +              I+  E+E++   HP V D A++ +
Sbjct: 404 DAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSM 463

Query: 49  PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
           P ++ GE   A +V +   ++ A ++++F+ ++     +L   V     D +P T  GKV
Sbjct: 464 PDELLGEKSCAFIVVRD-PALKAAQLRRFLRERGLAEYKLPDRVEF--VDSLPLTAVGKV 520

Query: 109 KRKDL 113
            +K L
Sbjct: 521 DKKAL 525

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 18/122 (14%)

Query: 6   GWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHD 51
            W  TGDL Y   DG                  I   E+E+  R  P VE+  V+ +P  
Sbjct: 330 RWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALRALPGVEEAVVLPVPKG 389

Query: 52  VFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRK 111
                  A VV K  +  T + +K+ ++ ++ P       V+L   D +P   +GK+ RK
Sbjct: 390 EKVVRLVAFVVGKEGALDT-KALKKELKKRLPPYMIPRRFVYL---DSLPLNANGKIDRK 445

Query: 112 DL 113
            L
Sbjct: 446 AL 447

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 29/124 (23%)

Query: 10  TGDLAYRLPDGT--------------HFIISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
           TGDL    PDG                F I   E+E+  R HP V D  V+ +  +  G+
Sbjct: 324 TGDLVRWRPDGRLEYLGRADDQVKIRGFRIELGEIEAALRAHPGVADAVVV-VREEGPGD 382

Query: 56  --LPAAVVVPKPNSSVTAEEVKQFVEDQVN----PSKRLSGGVFLCSFDFIPRTMSGKVK 109
             L  A VVPK  ++  AE ++  +   +     P+            D +P T +GKV 
Sbjct: 383 QRL-VAYVVPKAGAAPDAEALRAALRATLPAYMVPA-------AFVQLDELPLTPNGKVD 434

Query: 110 RKDL 113
           RK L
Sbjct: 435 RKAL 438

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 40/145 (27%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI---------------ISPCELESIFRQHPDVEDVAVI 46
             +DGWLHTGD      DG   I               ++P  +E++   +P VE V V+
Sbjct: 367 FTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLLSANPHVEQVCVV 426

Query: 47  G--IPHDVFGELPAAVVV------PKPNSSVTAE--EVKQFVEDQVNPSKRLSGGVFLCS 96
           G  +P       P A+VV      P     V     +    V  ++   +RLS  + +  
Sbjct: 427 GSGLPQ------PVALVVLSEAADPLEREEVEESLQQTLAKVNSELESHERLS-ALVVVK 479

Query: 97  ------FDFIPRTMSGKVKRKDLNE 115
                    +  T+  K+KR  + +
Sbjct: 480 EAWTVENGLLTPTL--KIKRNVVEK 502

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 39/132 (29%), Positives = 50/132 (37%), Gaps = 30/132 (22%)

Query: 5   DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
           DGW++TGDL  R  DG  +I              I+P E++ I      V + A   IP 
Sbjct: 401 DGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPD 460

Query: 51  DVFGELPAAVVVPKPN-SSVTAEEVKQFV--------EDQVNPSKRLSGGVFLCSFDFIP 101
           + FG L    VV         A  +K  +        E    PS        +     IP
Sbjct: 461 EEFGALVGLAVVASAELDESAARALKHTIAARFRRESEPMARPST-------IVIVTDIP 513

Query: 102 RTMSGKVKRKDL 113
           RT SGKV R  L
Sbjct: 514 RTQSGKVMRASL 525

Length = 540

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 21/120 (17%)

Query: 10  TGDLAYRLPDGT--------------HFIISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
           TGDL  R  DG                F I   E+E+  R  P V + AV+    D  G+
Sbjct: 335 TGDLVRRRADGQLEYLGRIDDQVKVRGFRIELGEIEAALRSIPGVAE-AVVVAIGDAAGD 393

Query: 56  --LPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDL 113
             L  A +V  P +++  E+++  +  ++ P+  +         D +P T +GK+ RK L
Sbjct: 394 RQL-VAYIVADPGAAIDIEDLRARLATRL-PAYMVPS--RFVRLDALPLTPNGKIDRKAL 449

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 48.6 bits (117), Expect = 1e-07
 Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 32/124 (25%)

Query: 10  TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
           TGD A R  DG ++I              +   E+ES    HP V + AV+G P D+ G+
Sbjct: 487 TGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQ 546

Query: 56  LPAAVVVPKPNSSVTAE---EVKQFVEDQVNPSKRLSGGVFLCSFDFI------PRTMSG 106
              A V  K     + E   E++ +V  ++ P         +   D I      P+T SG
Sbjct: 547 GIYAFVTLKGGEEPSDELRKELRNWVRKEIGP---------IAKPDVIQFAPGLPKTRSG 597

Query: 107 KVKR 110
           K+ R
Sbjct: 598 KIMR 601

Length = 637

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 36/130 (27%), Positives = 50/130 (38%), Gaps = 30/130 (23%)

Query: 4   DDGWLHTGDLAY----------RLPDGTHFIIS-------PCELESIFRQHPDVEDVAVI 46
           + GW  T DL            R  D     IS       P  +E+    HP V D AV 
Sbjct: 232 EPGWFRTDDLGALDDGVLTVLGRADD----AISTGGLTVLPQVVEAALATHPAVADCAVF 287

Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPS---KRLSGGVFLCSFDFIPRT 103
           G+P D  G+   A VV     + T E ++  V   ++ +   + L         D +PR 
Sbjct: 288 GLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVARTLDRTAAPRELH------VVDELPRR 341

Query: 104 MSGKVKRKDL 113
             GKV R+ L
Sbjct: 342 GIGKVDRRAL 351

Length = 358

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 19/120 (15%)

Query: 8   LHTGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVF 53
           + T DL Y+   GT HF+             + P E+E +  + P V++  V      V 
Sbjct: 293 IFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVA 352

Query: 54  GELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDL 113
           GE   A V+      +   +++++    + P +       +     IP+  +GKV RK L
Sbjct: 353 GERVKAKVISH--EEIDPVQLREWCIQHLAPYQVPHEIESVTE---IPKNANGKVSRKLL 407

Length = 414

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 47.5 bits (113), Expect = 3e-07
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 18/76 (23%)

Query: 5   DGWLHTGDLAYRLPDGTHFII---------SPCE------LESIFRQHPDVEDVAVIGIP 49
           DGW HTGD+   LP+G   II         S  E      LE+++ Q+P VED+ V G  
Sbjct: 492 DGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYG-- 549

Query: 50  HDVFGELPAAVVVPKP 65
            D F  +  AVVVP  
Sbjct: 550 -DSFKSMLVAVVVPNE 564

Length = 660

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 28/131 (21%)

Query: 1   MLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVE--DVA 44
           +L  DGWL TGDL Y L DG  +I              I P ++E I  Q P++   D A
Sbjct: 434 VLAADGWLDTGDLGYLL-DGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAA 492

Query: 45  VIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDF----- 99
              I  +  GE    +V       ++ EE +  +   +    R   GV   + +      
Sbjct: 493 AFSIAQEN-GEKIVLLV----QCRISDEERRGQLIHALAALVRSEFGV-EAAVELVPPHS 546

Query: 100 IPRTMSGKVKR 110
           +PRT SGK+ R
Sbjct: 547 LPRTSSGKLSR 557

Length = 579

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 46.4 bits (111), Expect = 6e-07
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 17/94 (18%)

Query: 2   LDDDGWLHTGDLAYRLPDG---------THFI-----ISPCELESIFRQHPDVEDVAVIG 47
           ++D+GW  T D      +G           F      I P E+E +  QHP V+ V V+ 
Sbjct: 328 VNDEGWFATRDRG-EWQNGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVP 386

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQ 81
           +    FG+ P AVV  + +S      + ++++D+
Sbjct: 387 VADAEFGQRPVAVV--ESDSEAAVVNLAEWLQDK 418

Length = 458

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 30/132 (22%)

Query: 3   DDDGWLHTGDLAYRLPDG-THFI-------------ISPCELESIFRQHPDVEDVAVIGI 48
             D + +TGDL  R   G  +F+             +S  E+E +  +HP VE+  V G+
Sbjct: 315 KGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANVYGV 374

Query: 49  P-HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSK------RLSGGVFLCSFDFIP 101
                 G    A +   P ++   +     +++Q+ P+       R+   +         
Sbjct: 375 EVPGTEGRAGMAALTLAPGAAFDPQAFAAHLDEQL-PAYARPLFLRVQAAM--------E 425

Query: 102 RTMSGKVKRKDL 113
            T + K ++ DL
Sbjct: 426 TTGTFKYQKTDL 437

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 46.1 bits (109), Expect = 8e-07
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 18/124 (14%)

Query: 5   DGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPH 50
                TGD+ Y   DG  F++               P  +E    +HP V++V VIGIP 
Sbjct: 420 GDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPD 479

Query: 51  DVFGELPAAVVVPKPNSS-VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
              GE   A V  +P +   + +E++ F+  ++   +      F+   D +PRT  GK+ 
Sbjct: 480 QYRGEAAKAFVKLRPGAKPFSLDELRAFLAGKLGKHELPVAVEFV---DELPRTPVGKLS 536

Query: 110 RKDL 113
           R +L
Sbjct: 537 RHEL 540

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 8/117 (6%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 61
           +D+DG+      A  + + + + I P E+ES   +HP V + AV+  P  + GE+  A V
Sbjct: 412 MDEDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFV 471

Query: 62  VPKP-----NSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDL 113
           V  P     +     +E+++ V+    P K      F+     +P+T++GK+KR +L
Sbjct: 472 VLAPQFLSHDPEQLTKELQEHVKSVTAPYKYPRKVEFVQE---LPKTITGKIKRNEL 525

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 25/124 (20%)

Query: 10  TGDLAYRLPDGTHFIISPC--------------ELESIFRQHPDVEDVAVIGIPHDVFGE 55
           T D   R  DG +FI+                 E+E     HP V +VAV+G+   + G+
Sbjct: 477 TFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQ 536

Query: 56  LPAAVVVPKPNSSVTAE--------EVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +  A VVPK + S+           E+   V+ Q+    R +   F+ +   +P+T SGK
Sbjct: 537 VAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSA---LPKTRSGK 593

Query: 108 VKRK 111
           + R+
Sbjct: 594 LLRR 597

Length = 629

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 3/115 (2%)

Query: 1   MLDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAV 60
           + D++G++   D    L       IS  +LE+    HP V++ AV+ IPH  + E P AV
Sbjct: 398 VWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAV 457

Query: 61  VVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNE 115
           VVP+     T EE+ + +        +L       + + IPRT +GK  ++ L E
Sbjct: 458 VVPR-GEKPTPEELNEHLLKAGFAKWQLPDAYVF-AEE-IPRTSAGKFLKRALRE 509

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 32/149 (21%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIG 47
           L +DGWL TGD+ +    G  ++I               P E+E++  QHP V  V V+G
Sbjct: 410 LSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVG 469

Query: 48  IPHDVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPS--------KRLSG----GV 92
           +P     E+  A V  +     S    E  K+     ++          K LS      +
Sbjct: 470 VPDSRLTEMVVACVRLRDGWIWSDNEKENAKK--NLTLSSETLRHHCREKNLSRFKIPKL 527

Query: 93  FLCSFDFIPRTMSGKVKRKDLNETKVMRH 121
           F+      P T +GK++R D    +V+ H
Sbjct: 528 FVQWRKPFPLTTTGKIRR-DEVRREVLSH 555

Length = 563

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 6/115 (5%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 61
           +D+DG+L+  D    +       I P E E+    HP V DVAVIG+P    GE   AV+
Sbjct: 389 VDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVI 448

Query: 62  VPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDL 113
                   S   A E+  +   ++   K      F+   D +PRT +GK+ +  L
Sbjct: 449 QLVEGIRGSDELARELIDYTRSRIAHYKAPRSVEFV---DELPRTPTGKLVKGLL 500

Length = 501

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)

Query: 12  DLAYRLPDGTHFIISPC--------------ELESIFRQHPDVEDVAVIGIPHDVFGELP 57
           D   R  DG  FI+                 E+E     HP V +VAV+G+  ++ G++ 
Sbjct: 478 DWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVA 537

Query: 58  AAVVVPKPNSSV--------TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
               + K + S             +   V  Q+    R +   F+ +   +P+T SGK+ 
Sbjct: 538 VVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAA---LPKTRSGKLL 594

Query: 110 RK 111
           R+
Sbjct: 595 RR 596

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 28/97 (28%)

Query: 5   DGWLHTGDLAYRLPDG--------THFII-------SPCELESIFRQHPDVEDVAVIGIP 49
           D W  TGDL +   +G         + II       SP  +ES  +Q P +         
Sbjct: 325 DDWWATGDLGHLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAV----- 379

Query: 50  HDVFGE-LPA--AVVVPKPNSSVTAEEVKQFVEDQVN 83
             VFG+  P   A++VP PN  ++ ++++  V+ Q+N
Sbjct: 380 --VFGDAQPFLVALIVPAPN--ISDDQLEAAVQ-QIN 411

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 27/131 (20%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELE-SIFRQHPDVEDVAVI 46
            D+ GWL TGDL +   DG  ++                P ++E ++ R HP +   A  
Sbjct: 413 TDEGGWLRTGDLGFLH-DGELYVTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAA 471

Query: 47  GIPHDVFGELPAAVV--VPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDF----- 99
               D  GE    VV  V +         + + +   V        GV            
Sbjct: 472 AFSVDGDGEERLVVVAEVRRRGLPADLAALAEAIRAAV----AREHGVAPADVVLVRPGT 527

Query: 100 IPRTMSGKVKR 110
           +P+T SGK++R
Sbjct: 528 LPKTSSGKIQR 538

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 14/53 (26%)

Query: 7   WLHTGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAV 45
              TGDL   LPDG   F+             I   E+E+   +HP V +  V
Sbjct: 357 LYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 409

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 20/95 (21%)

Query: 3   DDDGWLHTGDLAYRLPDGTHFI----------------ISPCELESIFRQHPDVEDVAVI 46
           D +G+  +GDL    PDG  +I                I+  E+E++  +HP V   A++
Sbjct: 406 DANGFYCSGDLVSIDPDG--YITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALV 463

Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQ 81
            +  ++ GE   A +V K    + A ++++F+ +Q
Sbjct: 464 SMEDELMGEKSCAFLVVK--EPLKAVQLRRFLREQ 496

Length = 536

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 26/104 (25%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVI 46
           +D+DGWLHTGD+   LP G   II               +P ++E+++ +   V    V 
Sbjct: 483 IDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVY 542

Query: 47  GIPHDVFGELPAAVVVPKPN--------SSVTAEEVKQFVEDQV 82
           G   D       AVVV  P           +  E++KQ   D  
Sbjct: 543 G---DSLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPR 583

Length = 651

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 28/144 (19%)

Query: 6   GWLHTGDLAYRLPDGTHFIISPCE--------------LESIFRQHPDVEDVAVIGIPHD 51
           G+ ++GDL ++  +G + I+S  +              +E+   +HP V +   IGI   
Sbjct: 492 GYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDP 551

Query: 52  VFGELPAAVVVPKPNSSVTA-------EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTM 104
               +P  ++V K + S  +        E+   +   +     L   + +     +P+T 
Sbjct: 552 DCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQ---LPKTK 608

Query: 105 SGKVKR----KDLNETKVMRHDDV 124
           +GK+ R    K LN++     D+V
Sbjct: 609 TGKIPRQIISKFLNDSNYQLPDNV 632

Length = 647

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 23/129 (17%)

Query: 2   LDDDGWLHTGDLAYRLPDG-------THFI------ISPCELESIFRQHPDVEDVAVIGI 48
           +D D W  TGDL Y +  G          I      I P E+E +  Q   V + AV+ +
Sbjct: 392 IDPDDWFPTGDLGYLVDGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAV 451

Query: 49  PHDVFGELPAAVVVPK---PNSSVTAEEVKQFVEDQ--VNPSKRLSGGVFLCSFDFIPRT 103
                   P  V+  +   P+ +    EV Q V  +  V PS      V   +   +PRT
Sbjct: 452 GTGEGSARPGLVIAAEFRGPDEAGARSEVVQRVASECGVVPSD-----VVFVAPGSLPRT 506

Query: 104 MSGKVKRKD 112
            SGK++R  
Sbjct: 507 SSGKLRRLA 515

Length = 525

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 15/52 (28%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFIIS--------------PCE-LESIFRQHP 38
           LD+DGW HTGD+     +GT  II                 E LE+++ Q+ 
Sbjct: 532 LDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNE 583

Length = 700

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 3/111 (2%)

Query: 3   DDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 62
           D++G+L+       +   + + +SP E+E +      V +    G+P    G+    VV 
Sbjct: 407 DEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVT 466

Query: 63  PKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDL 113
           P     +    +      ++ P+  +   + +     +PR  +GK+ RK L
Sbjct: 467 PPGGEELDRAALLAECRARL-PNYMVPALIHVR--QALPRNANGKIDRKAL 514

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 12/23 (52%), Positives = 17/23 (73%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI 24
           +D+DGWLH+GDL +   DG  +I
Sbjct: 415 IDEDGWLHSGDLGFLDDDGFLYI 437

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 23/93 (24%)

Query: 3   DDDG--WLHTGDLAY-----RL------------PDGTHFIISPCELESIFRQHPDVEDV 43
           D  G  W   GDL Y     RL              GT + I PCE   IF  HP V+  
Sbjct: 415 DGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTI-PCE--RIFNTHPGVKRS 471

Query: 44  AVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQ 76
           A++G+      + P   V  +P  + +   + Q
Sbjct: 472 ALVGVGVPG-AQRPVLCVELEPGVACSKSALYQ 503

Length = 552

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 18/74 (24%)

Query: 5   DGWLHTGDLAYRLPDGTHFII---------SPCE------LESIFRQHPDVEDVAVIGIP 49
           DGW HTGD+    P+G   II         S  E      LE+ + + P +  + V G  
Sbjct: 492 DGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYG-- 549

Query: 50  HDVFGELPAAVVVP 63
            + F     AVVVP
Sbjct: 550 -NSFESFLVAVVVP 562

Length = 660

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 36.1 bits (83), Expect = 0.003
 Identities = 35/126 (27%), Positives = 50/126 (39%), Gaps = 26/126 (20%)

Query: 10   TGDLAYRLPDGT--------H------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
            TGDLA    DG         H      F I   E+E+  R+HP V +  VI     V  +
Sbjct: 4933 TGDLARYRADGVIDYLGRVDHQVKIRGFRIELGEIEARLREHPAVREAVVIAQEGAVGKQ 4992

Query: 56   LPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVF--------LCSFDFIPRTMSGK 107
            L    VVP+  +   A+E +  + D++   K               L     +P T +GK
Sbjct: 4993 L-VGYVVPQDPALADADEAQAELRDEL---KAALRERLPEYMVPAHLVFLARMPLTPNGK 5048

Query: 108  VKRKDL 113
            + RK L
Sbjct: 5049 LDRKAL 5054

Length = 5163

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 33/121 (27%), Positives = 46/121 (38%), Gaps = 24/121 (19%)

Query: 10   TGDLAYRLPDGT--------H------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
            TGDLA    DG         H      F I   E+E+   QHP V +  V+        +
Sbjct: 3475 TGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQ 3534

Query: 56   LPAAVVVPKPNSS---VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKD 112
            L A VV   P         + +   + D + P++ L     L +    P   +GKV RK 
Sbjct: 3535 LVAYVVPADPQGDWRETLRDHLAASLPDYMVPAQLL----VLAAM---PLGPNGKVDRKA 3587

Query: 113  L 113
            L
Sbjct: 3588 L 3588

Length = 3956

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 35.6 bits (82), Expect = 0.004
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 26/139 (18%)

Query: 6   GWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHD 51
           G+  +GD   R  DG +++              I   E+ES    HP   + AV+GI H+
Sbjct: 513 GYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHE 572

Query: 52  VFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFI------PRTMS 105
           V G+   A V        + E  K  +      + R   G F    D I      P+T S
Sbjct: 573 VKGQGIYAFVTLVEGVPYSEELRKSLIL-----TVRNQIGAFAAP-DKIHWAPGLPKTRS 626

Query: 106 GKVKRKDLNETKVMRHDDV 124
           GK+ R+ L +    + D++
Sbjct: 627 GKIMRRILRKIASRQLDEL 645

Length = 666

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 19/130 (14%)

Query: 1   MLDDDGWLHTGDLAYRLPDG--------THFIISPCEL------ESIFRQHPDVEDVAVI 46
              +  W   GDL Y    G         H + +          E +F +HP V   A++
Sbjct: 325 SDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHPGVRRSALV 384

Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVED---QVNPSKRLSGGVFLCSFDFIPRT 103
           G+      + P  VV P P      + ++  +     Q   +  +   +    F    R 
Sbjct: 385 GV-GKPGTQAPVLVVEPMPPVLDRRKRLEGRLRATAKQAPATVEIQAVLIHPQFPVDIRH 443

Query: 104 MSGKVKRKDL 113
            + K+ R+ L
Sbjct: 444 NA-KIFRERL 452

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
KOG1176|consensus	537		99.97
PRK09188	365	serine/threonine protein kinase; Provisional	99.94
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	99.93
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.92
PLN02654	666	acetate-CoA ligase	99.92
KOG1175|consensus	626		99.91
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.91
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.91
PLN02860	563	o-succinylbenzoate-CoA ligase	99.91
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.91
PTZ00237	647	acetyl-CoA synthetase; Provisional	99.91
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	99.91
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	99.91
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.9
PRK07529	632	AMP-binding domain protein; Validated	99.9
PLN03051	499	acyl-activating enzyme; Provisional	99.9
PLN02574	560	4-coumarate--CoA ligase-like	99.9
PRK07868	994	acyl-CoA synthetase; Validated	99.9
PRK07788	549	acyl-CoA synthetase; Validated	99.9
PRK00174	637	acetyl-CoA synthetase; Provisional	99.9
PRK09088	488	acyl-CoA synthetase; Validated	99.9
KOG1177|consensus	596		99.9
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	99.9
PRK05852	534	acyl-CoA synthetase; Validated	99.89
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.89
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	99.89
PRK06839	496	acyl-CoA synthetase; Validated	99.89
PLN02330	546	4-coumarate--CoA ligase-like 1	99.89
PLN03102	579	acyl-activating enzyme; Provisional	99.89
PRK12583	558	acyl-CoA synthetase; Provisional	99.89
PLN02246	537	4-coumarate--CoA ligase	99.89
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.88
PRK07470	528	acyl-CoA synthetase; Validated	99.88
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	99.88
PRK06060	705	acyl-CoA synthetase; Validated	99.88
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	99.88
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.88
PRK07867	529	acyl-CoA synthetase; Validated	99.88
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	99.88
PRK07798	533	acyl-CoA synthetase; Validated	99.88
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.88
PRK10946	536	entE enterobactin synthase subunit E; Provisional	99.88
PRK06145	497	acyl-CoA synthetase; Validated	99.88
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	99.87
PRK07638	487	acyl-CoA synthetase; Validated	99.87
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.87
PRK08316	523	acyl-CoA synthetase; Validated	99.87
PRK04319	570	acetyl-CoA synthetase; Provisional	99.87
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.87
PRK13388	540	acyl-CoA synthetase; Provisional	99.87
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	99.87
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	99.87
PRK13382	537	acyl-CoA synthetase; Provisional	99.87
PRK05857	540	acyl-CoA synthetase; Validated	99.87
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	99.87
PRK07514	504	malonyl-CoA synthase; Validated	99.87
PRK07787	471	acyl-CoA synthetase; Validated	99.87
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	99.87
PRK08315	559	AMP-binding domain protein; Validated	99.86
PRK13390	501	acyl-CoA synthetase; Provisional	99.86
PRK06164	540	acyl-CoA synthetase; Validated	99.86
PRK06188	524	acyl-CoA synthetase; Validated	99.86
PLN03052	728	acetate--CoA ligase; Provisional	99.86
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.86
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	99.86
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.86
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.86
PRK06178	567	acyl-CoA synthetase; Validated	99.86
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.86
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	99.85
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.85
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.85
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.85
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	99.85
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	99.85
PRK09274	552	peptide synthase; Provisional	99.85
PRK08308	414	acyl-CoA synthetase; Validated	99.85
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	99.85
PLN02736	651	long-chain acyl-CoA synthetase	99.85
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	99.85
PRK13383	516	acyl-CoA synthetase; Provisional	99.85
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	99.84
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.84
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	99.84
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.84
PRK13391	511	acyl-CoA synthetase; Provisional	99.84
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.84
PRK08162	545	acyl-CoA synthetase; Validated	99.84
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.83
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.83
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	99.82
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.82
PRK09192	579	acyl-CoA synthetase; Validated	99.82
PRK12316	5163	peptide synthase; Provisional	99.81
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.81
PRK12316	5163	peptide synthase; Provisional	99.81
PRK12467	3956	peptide synthase; Provisional	99.81
PLN02479	567	acetate-CoA ligase	99.81
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	99.8
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.8
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	99.78
PRK12467	3956	peptide synthase; Provisional	99.78
PRK05691	4334	peptide synthase; Validated	99.77
PRK05691	4334	peptide synthase; Validated	99.76
PLN02614	666	long-chain acyl-CoA synthetase	99.75
PLN02861	660	long-chain-fatty-acid-CoA ligase	99.75
PRK05850	578	acyl-CoA synthetase; Validated	99.75
PRK08180	614	feruloyl-CoA synthase; Reviewed	99.75
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.73
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	99.73
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.72
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.71
PTZ00216	700	acyl-CoA synthetase; Provisional	99.69
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	99.68
PTZ00342	746	acyl-CoA synthetase; Provisional	99.66
PRK12582	624	acyl-CoA synthetase; Provisional	99.65
KOG1256|consensus	691		99.59
KOG1179|consensus	649		99.55
KOG1180|consensus	678		99.47
KOG1178|consensus	1032		99.45
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.43
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.18
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	98.53
PTZ00297	1452	pantothenate kinase; Provisional	98.52
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	98.07
KOG3628|consensus	1363		97.83
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	96.98
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	96.79
KOG3628|consensus	1363		93.89

>KOG1176|consensus

Probab=99.97  E-value=3e-31  Score=198.56  Aligned_cols=116  Identities=42%  Similarity=0.763  Sum_probs=111.7

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      |+++|||+|||+|++|+||+|||.              +|.|||++|..||.|.||+|++.+|+.+|+.+.|+|+.+++.
T Consensus       404 ~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~  483 (537)
T KOG1176|consen  404 FDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGS  483 (537)
T ss_pred             cccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCC
Confidence            567799999999999999999997              999999999999999999999999999999999999999988


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      ....+++.+++++++++|+.|.. ++|  ++++|+|++||+.|+.|++++.+.
T Consensus       484 ~lte~di~~~v~k~l~~y~~~~~-V~F--vd~lPKs~~GKi~R~~lr~~~~~~  533 (537)
T KOG1176|consen  484 TLTEKDIIEYVRKKLPAYKLPGG-VVF--VDELPKTPNGKILRRKLRDIAKKL  533 (537)
T ss_pred             cCCHHHHHHHHHhhCChhhccCe-EEE--eccCCCCCcchHHHHHHHHHHHhc
Confidence            99999999999999999999997 999  999999999999999999998764

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.94  E-value=1.8e-25  Score=161.32  Aligned_cols=111  Identities=20%  Similarity=0.275  Sum_probs=100.8

Q ss_pred             CCCceecCceEEE-cCCCcEEEe------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           4 DDGWLHTGDLAYR-LPDGTHFII------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         4 ~~g~~~TGD~~~~-~~~g~l~~~------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      .+|||+|||+|++ |++|+|+|.            +|. ||+++.+||+|.+|+|++++++.+|+.+.|++++..  ..+
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~--~~~  283 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEGTGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL--PAD  283 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCcCCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC--CCC
Confidence            5899999999998 799999995            788 999999999999999999999999999999998763  456


Q ss_pred             HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975          71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH  121 (126)
Q Consensus        71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~  121 (126)
                      .++++++++..|+. ++|+. +.+  ++.||+|++||++|+.|+.++....
T Consensus       284 ~~el~~~l~~~L~~-kvP~~-v~~--v~~lP~t~~GKi~R~~Lr~~~~~~~  330 (365)
T PRK09188        284 EKSLRARLAGAKPP-KPPEH-IQP--VAALPRDADGTVRDDILRLIAMNQI  330 (365)
T ss_pred             HHHHHHHHHhhchh-cCCcE-EEE--ECCCCCCCCCCccHHHHHHHhhccc
Confidence            78999999999999 99996 999  8999999999999999999875443

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.93  E-value=3.2e-25  Score=167.21  Aligned_cols=115  Identities=42%  Similarity=0.720  Sum_probs=107.2

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCC-
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN-   66 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~-   66 (126)
                      |+.+|||+|||+|++|++|+++|.              +|.+||.++.+||.|.++++++++++.+|+.++++++++++ 
T Consensus       397 f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~  476 (534)
T COG0318         397 FDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGG  476 (534)
T ss_pred             hccCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCC
Confidence            334699999999999999999997              99999999999999999999999999999999999999876 


Q ss_pred             -CCCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          67 -SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        67 -~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                       ...+.+++..+++..++.++.|+. +++  ++.+|+|++||++|+.|++.+..
T Consensus       477 ~~~~~~~~i~~~~~~~l~~~~~P~~-v~~--v~~lP~t~sGKi~r~~lr~~~~~  527 (534)
T COG0318         477 DAELTAEELRAFLRKRLALYKVPRI-VVF--VDELPRTASGKIDRRALREEYRA  527 (534)
T ss_pred             CCCCCHHHHHHHHHhhhhcccCCeE-EEE--eCCCCCCCchhhhHHHHHHHHHh
Confidence             344789999999999999999995 999  89999999999999999999887

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.92  E-value=4.5e-24  Score=158.20  Aligned_cols=116  Identities=34%  Similarity=0.533  Sum_probs=106.0

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      +.+|||+|||+|++|++|++++.              +|.+||+++.++|+|.+|++++.+++..|+.+.++++..++ .
T Consensus       321 ~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~-~  399 (452)
T PRK07445        321 DSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP-S  399 (452)
T ss_pred             CCCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCC-C
Confidence            35799999999999999999997              99999999999999999999999999889999999988655 3


Q ss_pred             CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975          69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD  122 (126)
Q Consensus        69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~  122 (126)
                      .+.+++++++++.|++|++|+. +++  ++.+|+|++||++|++|++++..++.
T Consensus       400 ~~~~~l~~~~~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~~~  450 (452)
T PRK07445        400 ISLEELKTAIKDQLSPFKQPKH-WIP--VPQLPRNPQGKINRQQLQQIAVQRLG  450 (452)
T ss_pred             CCHHHHHHHHHHhCCcccCCeE-EEE--ecCCCCCCCcccCHHHHHHHHHHhhC
Confidence            5678999999999999999995 888  89999999999999999999887654

>PLN02654 acetate-CoA ligase

Probab=99.92  E-value=9.1e-24  Score=162.84  Aligned_cols=113  Identities=26%  Similarity=0.354  Sum_probs=104.0

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      +|||+|||+|++|++|+++++              +|.+||+++.+||+|.++++++++++..|+.+.++|++.++...+
T Consensus       512 ~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~  591 (666)
T PLN02654        512 AGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYS  591 (666)
T ss_pred             CCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCC
Confidence            799999999999999999997              999999999999999999999999999999999999998775443


Q ss_pred             H---HHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          71 A---EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        71 ~---~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      .   ++++.++++.|+++++|+. +++  ++.||+|++||++|+.|++++.+.
T Consensus       592 ~~l~~~l~~~~~~~L~~~~~P~~-i~~--v~~lP~T~sGKi~r~~l~~~~~~~  641 (666)
T PLN02654        592 EELRKSLILTVRNQIGAFAAPDK-IHW--APGLPKTRSGKIMRRILRKIASRQ  641 (666)
T ss_pred             HHHHHHHHHHHHHhCCCCcCCCE-EEE--CCCCCCCCCcCchHHHHHHHHcCC
Confidence            3   4788999999999999995 999  999999999999999999998764

>KOG1175|consensus

Probab=99.91  E-value=4.2e-24  Score=161.23  Aligned_cols=113  Identities=31%  Similarity=0.456  Sum_probs=105.8

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      .|+|.|||.+++|++||+++.              ++.|||+++.+||.|.|++|++.+++..|+.+.+|++++++....
T Consensus       474 pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~  553 (626)
T KOG1175|consen  474 PGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDP  553 (626)
T ss_pred             CceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCCh
Confidence            799999999999999999998              999999999999999999999999999999999999999984443


Q ss_pred             H---HHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          71 A---EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        71 ~---~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      .   ++|+++++..+.+++.|+. +++  +++||+|.+||+.|+.|+++..++
T Consensus       554 ~~L~kel~~~VR~~igp~a~P~~-I~~--v~~LPkTrSGKimRr~lrki~~g~  603 (626)
T KOG1175|consen  554 EQLTKELVKHVRSVIGPYAVPRL-IVF--VPGLPKTRSGKIMRRALRKIASGK  603 (626)
T ss_pred             HHHHHHHHHHHHhhcCcccccce-eEe--cCCCCccccchhHHHHHHHHhccC
Confidence            3   6888899999999999996 999  999999999999999999999876

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=99.91  E-value=9.9e-24  Score=162.28  Aligned_cols=113  Identities=18%  Similarity=0.218  Sum_probs=103.7

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      +|||+|||+|++|++|+|+++              +|.+||+++.+||+|.+|++++++++..++.+.++|++.++...+
T Consensus       498 ~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~  577 (652)
T TIGR01217       498 PGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLD  577 (652)
T ss_pred             CCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCC
Confidence            689999999999999999997              899999999999999999999999999999999999998765444


Q ss_pred             H---HHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          71 A---EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        71 ~---~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      .   +++++++++.|+++++|+. +.+  ++.||+|++||++|+.|++.+.+.
T Consensus       578 ~~~~~~l~~~~~~~l~~~~~P~~-i~~--v~~lP~T~sGKi~r~~Lr~~~~~~  627 (652)
T TIGR01217       578 DALLDRIKRTIRAGLSPRHVPDE-IIE--VPGIPHTLTGKRVEVAVKRVLQGT  627 (652)
T ss_pred             HHHHHHHHHHHHhhCCCCcCCCE-EEE--CCCCCCCCCccChHHHHHHHHcCC
Confidence            3   5899999999999999996 999  999999999999999999998654

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=99.91  E-value=6.9e-24  Score=158.68  Aligned_cols=110  Identities=33%  Similarity=0.537  Sum_probs=101.0

Q ss_pred             ceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC--
Q psy4975           7 WLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT--   70 (126)
Q Consensus         7 ~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--   70 (126)
                      ||.|||.+++|+||+|+|.              ++.|||++|.+||.|.+|++++.+++..|+.+.++|+++++...+  
T Consensus       397 ~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~~L  476 (528)
T COG0365         397 WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNEL  476 (528)
T ss_pred             eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChHHH
Confidence            9999999999999999997              899999999999999999999999999999999999999885433  


Q ss_pred             HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                      .++|++++++.+.+++.|+. +.+  ++.||+|.|||+.|+.|++.+.+
T Consensus       477 ~~ei~~~vr~~~~~~~~p~~-i~f--v~~LPkT~sGKI~R~~lr~~~~~  522 (528)
T COG0365         477 AEEIRRHVARNIGPHAIPRK-IRF--VDELPKTASGKIQRRLLRKILHK  522 (528)
T ss_pred             HHHHHHHHHhccCcccCCce-EEE--ecCCCCCCcccHHHHHHHHHHhh
Confidence            35677778777888999996 999  99999999999999999999873

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=99.91  E-value=1.3e-23  Score=159.03  Aligned_cols=120  Identities=26%  Similarity=0.484  Sum_probs=104.2

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      ++.+|||+|||+|+++++|++++.              +|.+||+++.++|+|.+|++++.+++..++.+.++++++++.
T Consensus       410 ~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~  489 (563)
T PLN02860        410 LSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGW  489 (563)
T ss_pred             ccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCcc
Confidence            346899999999999999999997              999999999999999999999999999899999999987652


Q ss_pred             --------------CCCHHHHHHHHHh-hcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccC
Q psy4975          68 --------------SVTAEEVKQFVED-QVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDD  123 (126)
Q Consensus        68 --------------~~~~~~~~~~l~~-~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~  123 (126)
                                    ....+.+..++++ .|++|++|+. ++++ .+.+|+|++||++|++|++++.++.+.
T Consensus       490 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~-~~~~-~~~lP~t~~GKi~r~~L~~~~~~~~~~  558 (563)
T PLN02860        490 IWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKL-FVQW-RKPFPLTTTGKIRRDEVRREVLSHLQS  558 (563)
T ss_pred             ccccccchhhcccccccHHHHHHHHhhCcccccccceE-EEEE-ecCCCCCcccchhHHHHHHHHHHHHhc
Confidence                          2445789999987 5999999996 5440 477999999999999999999876654

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.91  E-value=2e-23  Score=150.22  Aligned_cols=114  Identities=29%  Similarity=0.466  Sum_probs=104.0

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      +..+|||+|||+|++ ++|++++.              +|.+||+.+.++|+|.+|++++.+++..++.+.++++...+.
T Consensus       230 ~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~  308 (358)
T PRK07824        230 FAEPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGP  308 (358)
T ss_pred             ccCCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCC
Confidence            345789999999999 78999887              999999999999999999999999988888999998877666


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                      ....+++++++++.++.+++|.. +.+  ++++|+|++||++|++|++++..
T Consensus       309 ~~~~~~i~~~~~~~l~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~  357 (358)
T PRK07824        309 APTLEALRAHVARTLDRTAAPRE-LHV--VDELPRRGIGKVDRRALVRRFAG  357 (358)
T ss_pred             CcCHHHHHHHHHhhCccccCCCE-EEE--ecCCCCCCCccccHHHHHHHhhc
Confidence            67789999999999999999995 999  89999999999999999998864

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=99.91  E-value=2.2e-23  Score=160.28  Aligned_cols=113  Identities=21%  Similarity=0.395  Sum_probs=101.1

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC---
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS---   67 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~---   67 (126)
                      +|||+|||+|++|++|++++.              +|.+||+++.+||.|.+|++++++++..++.+.++|+++++.   
T Consensus       491 ~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~  570 (647)
T PTZ00237        491 PGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQ  570 (647)
T ss_pred             CCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCcccc
Confidence            799999999999999999997              999999999999999999999999999999999999987432   


Q ss_pred             CCCH----HHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          68 SVTA----EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        68 ~~~~----~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      ..+.    ++++++++..|+++++|+. +++  ++++|+|++||++|+.|++++.+.
T Consensus       571 ~~~~~~l~~~i~~~~~~~l~~~~~P~~-i~~--v~~lP~T~sGKi~R~~Lr~~~~~~  624 (647)
T PTZ00237        571 SIDLNKLKNEINNIITQDIESLAVLRK-III--VNQLPKTKTGKIPRQIISKFLNDS  624 (647)
T ss_pred             CCCHHHHHHHHHHHHHhhcCccccCcE-EEE--cCCCCCCCCccEeHHHHHHHHcCC
Confidence            2232    4667888889999999995 999  999999999999999999998654

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=99.91  E-value=3.5e-23  Score=159.12  Aligned_cols=114  Identities=20%  Similarity=0.196  Sum_probs=103.6

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      +|||+|||+|++|++|+|+|.              +|.+||+++.+||+|.+|++++.+++..++.+.+++++.++...+
T Consensus       497 ~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~  576 (655)
T PRK03584        497 PGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLD  576 (655)
T ss_pred             CCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCc
Confidence            579999999999999999997              899999999999999999999999988899999999998765444


Q ss_pred             H---HHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975          71 A---EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH  121 (126)
Q Consensus        71 ~---~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~  121 (126)
                      .   +++++++++.|+++++|.. +++  ++.+|+|++||++|+.|++++.+..
T Consensus       577 ~~~~~~l~~~~~~~L~~~~~P~~-i~~--v~~lP~t~sGKi~r~~lr~~~~~~~  627 (655)
T PRK03584        577 DALRARIRTTIRTNLSPRHVPDK-IIA--VPDIPRTLSGKKVELPVKKLLHGRP  627 (655)
T ss_pred             HHHHHHHHHHHHhhCCCCcCCCE-EEE--CCCCCCCCCccchHHHHHHHHcCCC
Confidence            3   6899999999999999996 999  9999999999999999999987643

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=99.91  E-value=2.1e-23  Score=159.80  Aligned_cols=115  Identities=25%  Similarity=0.402  Sum_probs=103.4

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      ++|||+|||+|++|++|+|++.              +|.+||+++.++|+|.+|++++++++..++.+++++++.++...
T Consensus       470 ~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~  549 (628)
T TIGR02316       470 KRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSA  549 (628)
T ss_pred             CCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCccc
Confidence            4689999999999999999997              99999999999999999999999999999999999988765321


Q ss_pred             --------CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975          70 --------TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH  121 (126)
Q Consensus        70 --------~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~  121 (126)
                              ..+++++++++.|+++++|+. +++  ++.+|+|++||++|+.|++++.+..
T Consensus       550 ~~~~~~~~~~~~i~~~~~~~L~~~~~P~~-v~~--v~~lP~t~sGKi~r~~L~~~~~~~~  606 (628)
T TIGR02316       550 GDAHDPHAVETGMMDCVVRQLGAVARPAR-VYF--VAALPKTRSGKLLRRSIQALAEGRD  606 (628)
T ss_pred             ccccchHHHHHHHHHHHHHhcCCCcCCCE-EEE--cCCCCCCCchHHHHHHHHHHHcCCC
Confidence                    246899999999999999996 999  9999999999999999999887643

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=99.90  E-value=4.8e-23  Score=157.53  Aligned_cols=114  Identities=31%  Similarity=0.447  Sum_probs=104.6

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      .+|||+|||+|++|++|++++.              +|.+||+++.++|+|.+|++++.+++..|+.+.+++++.++...
T Consensus       473 ~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~  552 (625)
T TIGR02188       473 FPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEP  552 (625)
T ss_pred             CCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCC
Confidence            3789999999999999999997              99999999999999999999999999999999999999877544


Q ss_pred             C---HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          70 T---AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        70 ~---~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      .   .+++++++++.|+++++|+. +++  ++.+|+|++||++|+.|++++.+.
T Consensus       553 ~~~~~~~l~~~~~~~l~~~~~P~~-i~~--v~~lP~t~sGKi~r~~l~~~~~~~  603 (625)
T TIGR02188       553 DDELRKELRKHVRKEIGPIAKPDK-IRF--VPGLPKTRSGKIMRRLLRKIAAGE  603 (625)
T ss_pred             CHHHHHHHHHHHHhhcCCCccCcE-EEE--CCCCCCCCCccchHHHHHHHHcCC
Confidence            3   36899999999999999995 999  999999999999999999998765

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07529 AMP-binding domain protein; Validated

Probab=99.90  E-value=3.7e-23  Score=158.57  Aligned_cols=115  Identities=34%  Similarity=0.560  Sum_probs=105.9

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      .++|||+|||+|+++++|++++.              +|.+||+.+.+||+|.+|++++.+++..|+.+++++++.++..
T Consensus       442 ~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~  521 (632)
T PRK07529        442 LEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGAS  521 (632)
T ss_pred             cCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCC
Confidence            36899999999999999999997              8999999999999999999999999999999999999988877


Q ss_pred             CCHHHHHHHHHhhcC-CCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          69 VTAEEVKQFVEDQVN-PSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        69 ~~~~~~~~~l~~~l~-~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      .+.++++++++++++ .+++|+. +++  ++.||+|++||++|+.|++++..+
T Consensus       522 ~~~~~l~~~~~~~l~~~~~~P~~-i~~--v~~lP~t~~GKi~r~~Lr~~~~~~  571 (632)
T PRK07529        522 ATEAELLAFARDHIAERAAVPKH-VRI--LDALPKTAVGKIFKPALRRDAIRR  571 (632)
T ss_pred             CCHHHHHHHHHHhcchhccCCcE-EEE--ecCCCCCCCCcccHHHHHHHHHHH
Confidence            788999999999986 5799995 999  899999999999999999987653

>PLN03051 acyl-activating enzyme; Provisional

Probab=99.90  E-value=3.8e-23  Score=154.61  Aligned_cols=115  Identities=22%  Similarity=0.287  Sum_probs=95.6

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhc-CCCcceEEEEeeecCCCC-CeeEEEE---EeCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQ-HPDVEDVAVIGIPHDVFG-ELPAAVV---VPKP   65 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~-~~~v~~~~~~~~~~~~~~-~~~~~~v---~~~~   65 (126)
                      .+||+|||+|++|++|+|+|.              +|.+||+++.+ ||+|.+|++++++++.+| +.+.+++   ++++
T Consensus       356 ~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~  435 (499)
T PLN03051        356 MPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKK  435 (499)
T ss_pred             cceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecc
Confidence            458999999999999999997              99999999986 999999999999999888 6788888   6665


Q ss_pred             CC-CCCHHHHHHHH----HhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975          66 NS-SVTAEEVKQFV----EDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD  122 (126)
Q Consensus        66 ~~-~~~~~~~~~~l----~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~  122 (126)
                      +. ....+++++++    ++.|++++.|.. +.+  ++.||+|++||++|++|++.+..+..
T Consensus       436 ~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~~~  494 (499)
T PLN03051        436 GFDQARPEALQKKFQEAIQTNLNPLFKVSR-VKI--VPELPRNASNKLLRRVLRDQLKKELS  494 (499)
T ss_pred             cccccchHHHHHHHHHHHHhhcCCccCCce-EEE--cCCCCCCCCccHHHHHHHHHHHHhhc
Confidence            53 34455666555    455777777874 888  89999999999999999998776543

>PLN02574 4-coumarate--CoA ligase-like

Probab=99.90  E-value=3.7e-23  Score=156.46  Aligned_cols=116  Identities=37%  Similarity=0.716  Sum_probs=106.3

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      |+.+|||+|||+|+++++|++++.              ++.+||..+.+||+|.++++++++++..++.+.++++..++.
T Consensus       426 ~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~  505 (560)
T PLN02574        426 IDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGS  505 (560)
T ss_pred             ccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCC
Confidence            456899999999999999999997              999999999999999999999999988888899999887766


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      ..+.+++.+++++.|++++.|+. +.+  ++++|+|++||++|+.|++.+.+.
T Consensus       506 ~~~~~~l~~~~~~~l~~~~~p~~-v~~--v~~iP~t~~GKi~r~~L~~~~~~~  555 (560)
T PLN02574        506 TLSQEAVINYVAKQVAPYKKVRK-VVF--VQSIPKSPAGKILRRELKRSLTNS  555 (560)
T ss_pred             CCCHHHHHHHHHHhccCcccCcE-EEE--eeccCCCCcchhhHHHHHHHHhhc
Confidence            67778999999999999999995 888  899999999999999999988653

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.90  E-value=3.3e-23  Score=165.41  Aligned_cols=111  Identities=17%  Similarity=0.229  Sum_probs=101.0

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      ++|||+|||+|++|+||+|+|.              +|.+||++|.+||+|.+|+|++++++. ++.++++|+++++...
T Consensus       834 ~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~-~~~~~a~Vv~~~~~~~  912 (994)
T PRK07868        834 ADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGG-RQLAVAAVTLRPGAAI  912 (994)
T ss_pred             CCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCC-CceEEEEEEeCCCCcC
Confidence            5899999999999999999997              899999999999999999999998875 5778889988877667


Q ss_pred             CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                      +.+++++++++ +++|++|+. +++  ++.||+|++||++|++|++....
T Consensus       913 ~~~~L~~~l~~-l~~y~vP~~-i~~--v~~lP~T~sGKi~r~~L~~~~lp  958 (994)
T PRK07868        913 TAADLTEALAS-LPVGLGPDI-VHV--VPEIPLSATYRPTVSALRAAGIP  958 (994)
T ss_pred             CHHHHHHHHHh-CCCCcCCeE-EEE--eCCCCCCccccEehHHHHhcCCC
Confidence            78899999986 999999995 999  99999999999999999887554

>PRK07788 acyl-CoA synthetase; Validated

Probab=99.90  E-value=3.4e-23  Score=156.09  Aligned_cols=110  Identities=35%  Similarity=0.614  Sum_probs=102.4

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      .+|||+|||+|+++++|++++.              +|.+||+.+.++|+|.++++++.+++..++.+.+++++.++...
T Consensus       425 ~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~  504 (549)
T PRK07788        425 IDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAAL  504 (549)
T ss_pred             cCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCC
Confidence            3689999999999999999996              89999999999999999999999999989999999998877677


Q ss_pred             CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHH
Q psy4975          70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNET  116 (126)
Q Consensus        70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~  116 (126)
                      +.++++++++++|++|++|.. +++  ++++|+|++||++|++|+++
T Consensus       505 ~~~~l~~~~~~~l~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~  548 (549)
T PRK07788        505 DEDAIKDYVRDNLARYKVPRD-VVF--LDELPRNPTGKVLKRELREM  548 (549)
T ss_pred             CHHHHHHHHHHhhhcCCCCcE-EEE--eCCCCCCCCcCEeHHHhhcc
Confidence            889999999999999999996 888  89999999999999999764

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=99.90  E-value=9.5e-23  Score=156.24  Aligned_cols=114  Identities=30%  Similarity=0.408  Sum_probs=104.0

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      .+|||+|||+|+++++|++++.              +|.+||+++.++|+|.+|++++.+++..|+.+.+++++.++...
T Consensus       481 ~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~  560 (637)
T PRK00174        481 FKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEP  560 (637)
T ss_pred             CCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCC
Confidence            4799999999999999999997              99999999999999999999999999999999999998876543


Q ss_pred             C---HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          70 T---AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        70 ~---~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      +   .+++++++++.|+.+++|.. +++  ++.+|+|++||++|+.|+++..+.
T Consensus       561 ~~~~~~~l~~~l~~~l~~~~~P~~-i~~--v~~lP~t~~GKi~R~~L~~~~~~~  611 (637)
T PRK00174        561 SDELRKELRNWVRKEIGPIAKPDV-IQF--APGLPKTRSGKIMRRILRKIAEGE  611 (637)
T ss_pred             CHHHHHHHHHHHHhhcCCccCCCE-EEE--cCCCCCCCCcchHHHHHHHHHcCC
Confidence            3   46899999999999999995 999  899999999999999999987655

>PRK09088 acyl-CoA synthetase; Validated

Probab=99.90  E-value=1.2e-22  Score=151.07  Aligned_cols=116  Identities=28%  Similarity=0.593  Sum_probs=105.4

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      ++++|||+|||+|+++++|++++.              +|.+||+.+.++++|.++++++++++..++...+++++.++.
T Consensus       357 ~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~  436 (488)
T PRK09088        357 FTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGA  436 (488)
T ss_pred             hcCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCC
Confidence            346899999999999999999986              899999999999999999999999887788888888887766


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      ..+..++.+++++.++++++|.. +.+  ++.+|+|++||++|++|++++.+.
T Consensus       437 ~~~~~~l~~~~~~~l~~~~~p~~-i~~--~~~iP~t~~gKi~r~~l~~~~~~~  486 (488)
T PRK09088        437 PLDLERIRSHLSTRLAKYKVPKH-LRL--VDALPRTASGKLQKARLRDALAAG  486 (488)
T ss_pred             CCCHHHHHHHHHhhCcCCCCCCE-EEE--cccCCCCCCCceeHHHHHHHHHhc
Confidence            66788999999999999999995 999  899999999999999999988753

>KOG1177|consensus

Probab=99.90  E-value=6.8e-23  Score=149.14  Aligned_cols=117  Identities=29%  Similarity=0.461  Sum_probs=109.1

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      ++.|.||+|||++.||++|++.++              +|.+||+.|.+||.|.++.|++++|...|+.++|++.+..+.
T Consensus       457 i~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~  536 (596)
T KOG1177|consen  457 IGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGA  536 (596)
T ss_pred             cccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccc
Confidence            567999999999999999999997              999999999999999999999999999999999999998775


Q ss_pred             C--CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975          68 S--VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH  121 (126)
Q Consensus        68 ~--~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~  121 (126)
                      .  ...+.|+.+++.++..|++|+ ++++  ++++|+|.+|||++-+++++..+..
T Consensus       537 e~~~t~E~lKa~Ck~klaHFKiPk-y~vf--~~~FPlT~tGKIqKFeir~~~k~~l  589 (596)
T KOG1177|consen  537 EGKTTAETLKAMCKGKLAHFKIPK-YFVF--VDEFPLTTTGKIQKFEIREMSKGHL  589 (596)
T ss_pred             cccccHHHHHHHHhcccccccCCc-EEEE--eccCcccccccchhHHHHHHHHhhc
Confidence            5  477999999999999999999 5999  9999999999999999999988544

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.90  E-value=1.2e-22  Score=153.70  Aligned_cols=116  Identities=35%  Similarity=0.557  Sum_probs=105.8

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      |..+|||+|||+|+++++|++++.              +|.+||+.+.++++|.++++++++++..++.+.+++++.++.
T Consensus       429 ~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~  508 (562)
T PRK05677        429 LDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGE  508 (562)
T ss_pred             cCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCC
Confidence            456899999999999999999986              899999999999999999999999988888888888877666


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      ..+.+++..++++.+++|++|.. +++  ++.+|+|++||++|++|++++..+
T Consensus       509 ~~~~~~l~~~~~~~l~~~~~P~~-i~~--v~~iP~t~sGKi~r~~L~~~~~~~  558 (562)
T PRK05677        509 TLTKEQVMEHMRANLTGYKVPKA-VEF--RDELPTTNVGKILRRELRDEELKK  558 (562)
T ss_pred             CCCHHHHHHHHHHhhhhccCCcE-EEE--eccCCCCCcccccHHHHHHHHHHh
Confidence            67788999999999999999995 999  999999999999999999877654

>PRK05852 acyl-CoA synthetase; Validated

Probab=99.89  E-value=1.1e-22  Score=152.83  Aligned_cols=113  Identities=34%  Similarity=0.547  Sum_probs=104.5

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      +|||+|||+|++|++|++++.              +|.+||+++.++|+|.+|++++.++...++.+.++++..+....+
T Consensus       407 ~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~~  486 (534)
T PRK05852        407 DGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPT  486 (534)
T ss_pred             CCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCCC
Confidence            689999999999999999997              899999999999999999999999988888899999887666677


Q ss_pred             HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      .+++.++++.+|+++++|.. +++  ++.+|+|++||++|++|++.+..+
T Consensus       487 ~~~i~~~~~~~l~~~~~P~~-i~~--v~~iP~t~~GKi~r~~L~~~~~~~  533 (534)
T PRK05852        487 AEELVQFCRERLAAFEIPAS-FQE--ASGLPHTAKGSLDRRAVAEQFGHS  533 (534)
T ss_pred             HHHHHHHHHHhcccccCCeE-EEE--hhhcCCCCCccccHHHHHHHhccc
Confidence            88999999999999999995 999  999999999999999999988654

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.89  E-value=1.4e-22  Score=154.25  Aligned_cols=114  Identities=20%  Similarity=0.224  Sum_probs=100.2

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCC-CCeeEEEEEeCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVF-GELPAAVVVPKPNSS   68 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~~~~~~   68 (126)
                      +++||+|||+|+++++|++++.              +|.+||+.+.++|+|.+|++++++++.. +....++++..++..
T Consensus       437 ~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~  516 (600)
T PRK08279        437 GDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAE  516 (600)
T ss_pred             CCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCcc
Confidence            4789999999999999999997              8999999999999999999999987653 445566666665556


Q ss_pred             CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      .+.+++.++++++|+.|++|.. +++  ++++|+|++||++|..|++++...
T Consensus       517 ~~~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~  565 (600)
T PRK08279        517 FDLAALAAHLYERLPAYAVPLF-VRL--VPELETTGTFKYRKVDLRKEGFDP  565 (600)
T ss_pred             CCHHHHHHHHHhhCccccCCeE-EEe--ecCCCCCcchhhhHHHHhhcCCCc
Confidence            6788999999999999999995 999  899999999999999999887765

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=99.89  E-value=2.9e-22  Score=153.37  Aligned_cols=115  Identities=30%  Similarity=0.475  Sum_probs=102.7

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      ++|||+|||+|++|++|++++.              +|.+||+++.++|+|.+|++++.+++..++.+.++++++.+...
T Consensus       471 ~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~  550 (629)
T PRK10524        471 GRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSL  550 (629)
T ss_pred             CCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCcc
Confidence            4689999999999999999997              89999999999999999999999999889999999998765322


Q ss_pred             --------CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975          70 --------TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH  121 (126)
Q Consensus        70 --------~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~  121 (126)
                              ..+++++++++.|+++++|.. +++  ++.+|+|++||++|+.|++++.+..
T Consensus       551 ~~~~~~~~~~~~i~~~~~~~l~~~~~P~~-i~~--v~~lP~T~sGKi~R~~L~~~~~~~~  607 (629)
T PRK10524        551 ADREARLALEKEIMALVDSQLGAVARPAR-VWF--VSALPKTRSGKLLRRAIQAIAEGRD  607 (629)
T ss_pred             ccccchHHHHHHHHHHHHhhcCCCcCCCE-EEE--cCCCCCCCCcchHHHHHHHHHcCCC
Confidence                    236788999999999999996 999  8999999999999999999877543

>PRK06839 acyl-CoA synthetase; Validated

Probab=99.89  E-value=3.9e-22  Score=148.22  Aligned_cols=113  Identities=31%  Similarity=0.512  Sum_probs=104.8

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      .+|||+|||+++++++|++++.              +|.+||+.+.++|+|.++++++.+++..++.+.++++++++...
T Consensus       369 ~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~  448 (496)
T PRK06839        369 QDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVL  448 (496)
T ss_pred             cCCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCC
Confidence            3789999999999999999986              89999999999999999999999999989999999999877777


Q ss_pred             CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                      ..++++++++..++++++|.. +++  ++.+|+|++||++|++|+++...
T Consensus       449 ~~~~l~~~~~~~l~~~~~P~~-~~~--v~~~P~t~~GKi~r~~l~~~~~~  495 (496)
T PRK06839        449 IEKDVIEHCRLFLAKYKIPKE-IVF--LKELPKNATGKIQKAQLVNQLKS  495 (496)
T ss_pred             CHHHHHHHHHhhCcCCCCCcE-EEE--eccCCCCccccccHHHHHHHhhc
Confidence            788999999999999999996 888  89999999999999999987754

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=99.89  E-value=4.1e-22  Score=150.24  Aligned_cols=117  Identities=43%  Similarity=0.752  Sum_probs=107.1

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      ++.+|||+|||+|+++++|++++.              +|.+||+++.+++.|.++++++++++..++.+.+++++.++.
T Consensus       413 ~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~  492 (546)
T PLN02330        413 IDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKA  492 (546)
T ss_pred             ccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCC
Confidence            457899999999999999999997              899999999999999999999999988888899999887766


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975          68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH  121 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~  121 (126)
                      ..+.++++++++..+++++.|+. +++  ++.+|+|++||++|++|++++....
T Consensus       493 ~~~~~~l~~~~~~~l~~~~~p~~-~~~--v~~iP~t~~GK~~r~~L~~~~~~~~  543 (546)
T PLN02330        493 KESEEDILNFVAANVAHYKKVRV-VQF--VDSIPKSLSGKIMRRLLKEKMLSIN  543 (546)
T ss_pred             CCCHHHHHHHHHHhcccccCceE-EEE--eccCCCCCCcceeHHHHHHHHHhhh
Confidence            66778999999999999999995 888  8999999999999999999987653

>PLN03102 acyl-activating enzyme; Provisional

Probab=99.89  E-value=2.7e-22  Score=152.40  Aligned_cols=114  Identities=26%  Similarity=0.474  Sum_probs=102.6

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC-
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV-   69 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-   69 (126)
                      +|||+|||+|++|++|++++.              +|.+||+.+.++|.|.++++++++++..++.+.+++++.++... 
T Consensus       419 ~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~  498 (579)
T PLN03102        419 HGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTK  498 (579)
T ss_pred             cCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCccccc
Confidence            689999999999999999987              89999999999999999999999999888899999988765332 


Q ss_pred             ---------CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975          70 ---------TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH  121 (126)
Q Consensus        70 ---------~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~  121 (126)
                               ...+++++++..|++|++|.. +++  ++.+|+|++||++|++|++++....
T Consensus       499 ~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~-i~~--~~~~P~t~~gKi~r~~L~~~~~~~~  556 (579)
T PLN03102        499 EDRVDKLVTRERDLIEYCRENLPHFMCPRK-VVF--LQELPKNGNGKILKPKLRDIAKGLV  556 (579)
T ss_pred             ccccccccccHHHHHHHHHhhcccccCCeE-EEE--cccCCCCCcccccHHHHHHHHHHhh
Confidence                     356899999999999999996 999  8999999999999999999886643

>PRK12583 acyl-CoA synthetase; Provisional

Probab=99.89  E-value=7.7e-22  Score=148.64  Aligned_cols=118  Identities=33%  Similarity=0.528  Sum_probs=107.4

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      +.+|||+|||+|+++++|++++.              +|.+||+.+..+++|.++++++.++...++.+.+++++.++..
T Consensus       425 ~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  504 (558)
T PRK12583        425 DEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHA  504 (558)
T ss_pred             CCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCC
Confidence            46899999999999999999996              8999999999999999999999999888888999998877666


Q ss_pred             CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccC
Q psy4975          69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDD  123 (126)
Q Consensus        69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~  123 (126)
                      .+..+++.+++++|+++++|.. +++  ++.+|+|++||++|+.|++++..+.+.
T Consensus       505 ~~~~~i~~~~~~~L~~~~~P~~-i~~--v~~lP~t~sGK~~r~~L~~~~~~~~~~  556 (558)
T PRK12583        505 ASEEELREFCKARIAHFKVPRY-FRF--VDEFPMTVTGKVQKFRMREISIEELAL  556 (558)
T ss_pred             CCHHHHHHHHHhhcccCcCCcE-EEE--eccCCCCCCCCccHHHHHHHHHhhcCC
Confidence            6788999999999999999996 888  899999999999999999998776543

>PLN02246 4-coumarate--CoA ligase

Probab=99.89  E-value=4e-22  Score=149.96  Aligned_cols=115  Identities=45%  Similarity=0.758  Sum_probs=104.5

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      ++++|||+|||+|+++++|++++.              +|.+||+.+.++|+|.++++++.++...++.+.++++..++.
T Consensus       408 ~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  487 (537)
T PLN02246        408 IDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGS  487 (537)
T ss_pred             ccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCC
Confidence            346899999999999999999996              899999999999999999999998888888889999887666


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                      ....+++++++++.+++++.|.. +.+  ++.+|+|++||++|+.|++++.+
T Consensus       488 ~~~~~~l~~~l~~~l~~~~~p~~-i~~--~~~~P~t~~GKi~r~~L~~~~~~  536 (537)
T PLN02246        488 EITEDEIKQFVAKQVVFYKRIHK-VFF--VDSIPKAPSGKILRKDLRAKLAA  536 (537)
T ss_pred             CCCHHHHHHHHHhhCcCccccce-EEE--eccCCCCCcchhhHHHHHHHHhc
Confidence            66778999999999999999996 888  89999999999999999998753

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.88  E-value=5.2e-22  Score=146.79  Aligned_cols=114  Identities=25%  Similarity=0.413  Sum_probs=103.5

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      .++|||+|||+|+++ +|++++.              +|.+||+.+.++|+|.+|++++.+++..++.+.+++++..  .
T Consensus       329 ~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~--~  405 (458)
T PRK09029        329 NDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDS--E  405 (458)
T ss_pred             cCCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCc--c
Confidence            457999999999999 9999997              8999999999999999999999999998888999888763  3


Q ss_pred             CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975          69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD  122 (126)
Q Consensus        69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~  122 (126)
                      ...+++++++++++++|++|.. ++.  ++.+|+|++||++|+.|++++.+...
T Consensus       406 ~~~~~l~~~~~~~l~~~~~P~~-~~~--~~~~p~t~~gKi~r~~L~~~~~~~~~  456 (458)
T PRK09029        406 AAVVNLAEWLQDKLARFQQPVA-YYL--LPPELKNGGIKISRQALKEWVAQQLG  456 (458)
T ss_pred             cCHHHHHHHHHhhchhccCCeE-EEE--ecccccCcCCCcCHHHHHHHHHhccC
Confidence            5678999999999999999996 888  89999999999999999999987554

>PRK07470 acyl-CoA synthetase; Validated

Probab=99.88  E-value=8.1e-22  Score=147.88  Aligned_cols=113  Identities=34%  Similarity=0.587  Sum_probs=104.3

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      +|||+|||+++++++|++++.              +|.+||..+.+++.|.+|++++.+++..++...++++..++...+
T Consensus       393 ~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  472 (528)
T PRK07470        393 DGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVD  472 (528)
T ss_pred             CCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCCC
Confidence            789999999999999999986              899999999999999999999999988888888898887766678


Q ss_pred             HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      .+++++++++.|+++++|.. +++  ++.+|+|++||++|+.|++++.++
T Consensus       473 ~~~~~~~l~~~l~~~~~P~~-~~~--~~~iP~t~~GKi~r~~l~~~~~~~  519 (528)
T PRK07470        473 EAELLAWLDGKVARYKLPKR-FFF--WDALPKSGYGKITKKMVREELEER  519 (528)
T ss_pred             HHHHHHHHHHhhhcCCCCcE-EEE--eccCCCCCcccccHHHHHHHHHhc
Confidence            88999999999999999996 888  899999999999999999988764

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=99.88  E-value=7.4e-22  Score=148.93  Aligned_cols=112  Identities=27%  Similarity=0.363  Sum_probs=103.3

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      .+|||+|||+|+++++|++++.              +|.+||+++.++++|.+|++++++++..+..+.+++++..+...
T Consensus       398 ~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~  477 (542)
T PRK06155        398 RNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTAL  477 (542)
T ss_pred             cCCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCC
Confidence            3799999999999999999986              99999999999999999999999998888888888888877777


Q ss_pred             CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHh
Q psy4975          70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKV  118 (126)
Q Consensus        70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~  118 (126)
                      +..++++++++.++.+++|.. +.+  ++.+|+|++||++|++|++++-
T Consensus       478 ~~~~~~~~~~~~l~~~~~P~~-i~~--~~~iP~t~~GKi~r~~l~~~~~  523 (542)
T PRK06155        478 EPVALVRHCEPRLAYFAVPRY-VEF--VAALPKTENGKVQKFVLREQGV  523 (542)
T ss_pred             CHHHHHHHHHhhCcCccCCcE-EEE--eccCCCCcccceeHHHHHhhcc
Confidence            889999999999999999995 888  8999999999999999998764

>PRK06060 acyl-CoA synthetase; Validated

Probab=99.88  E-value=5.4e-22  Score=153.70  Aligned_cols=113  Identities=21%  Similarity=0.315  Sum_probs=100.0

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      ..+|||+|||+|+++++|++++.              +|.+||+.+.++++|.+++++++++...++.+.+++++..+..
T Consensus       362 ~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~  441 (705)
T PRK06060        362 ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGAT  441 (705)
T ss_pred             cCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccC
Confidence            35799999999999999999987              9999999999999999999999998888888899988765533


Q ss_pred             CC---HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHh
Q psy4975          69 VT---AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKV  118 (126)
Q Consensus        69 ~~---~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~  118 (126)
                      .+   .+++.+++++.|+.|++|.. +++  ++.+|+|++||++|++|++.+.
T Consensus       442 ~~~~~~~~i~~~l~~~L~~~~~P~~-i~~--v~~iP~t~~GKidr~~L~~~~~  491 (705)
T PRK06060        442 IDGSVMRDLHRGLLNRLSAFKVPHR-FAV--VDRLPRTPNGKLVRGALRKQSP  491 (705)
T ss_pred             cChHHHHHHHHHHHHhCCCCcCCcE-EEE--eecCCCCcchhhHHHHHHhhcc
Confidence            33   25788899999999999996 888  8999999999999999998653

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.88  E-value=2.6e-22  Score=143.72  Aligned_cols=117  Identities=29%  Similarity=0.535  Sum_probs=108.8

Q ss_pred             CCCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCC
Q psy4975           1 MLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN   66 (126)
Q Consensus         1 ~~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~   66 (126)
                      +||.+|+|+|||+++++++|++.+.              ..+|||+.|..||.|.+|+++..+|...|++.++++++++.
T Consensus       409 aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~  488 (542)
T COG1021         409 AFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEP  488 (542)
T ss_pred             ccCcCCceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCC
Confidence            5899999999999999999999997              89999999999999999999999999999999999998755


Q ss_pred             CCCCHHHHHHHHHhh-cCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975          67 SSVTAEEVKQFVEDQ-VNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH  121 (126)
Q Consensus        67 ~~~~~~~~~~~l~~~-l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~  121 (126)
                       ..+..++++++.+. ++.|++|.+ +.+  ++.+|.|+-|||+++.|++++..+.
T Consensus       489 -~~~~~qlr~~L~~~GlAa~K~PDr-ie~--v~~~P~T~VGKIdKk~Lr~~l~~~~  540 (542)
T COG1021         489 -PLRAAQLRRFLRERGLAAFKLPDR-IEF--VDSLPLTAVGKIDKKALRRRLASRL  540 (542)
T ss_pred             -CCCHHHHHHHHHHcchhhhcCCcc-eee--cccCCCcccccccHHHHHHHhhhhc
Confidence             47789999999998 899999997 999  9999999999999999999887653

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.88  E-value=9.8e-22  Score=149.06  Aligned_cols=115  Identities=34%  Similarity=0.452  Sum_probs=103.9

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      ..+|||+|||+++++++|++++.              ++.+||+.+.++|.|.+|++++.++...|+...+++++.++..
T Consensus       427 ~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~  506 (576)
T PRK05620        427 TADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIE  506 (576)
T ss_pred             ccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCC
Confidence            45799999999999999999997              8999999999999999999999999988888888888776532


Q ss_pred             ---CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          69 ---VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        69 ---~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                         ...++++.++++.|+.+++|+. +++  ++.+|+|++||++|+.|++++...
T Consensus       507 ~~~~~~~~l~~~l~~~L~~~~~P~~-i~~--v~~~P~t~~GKv~r~~L~~~~~~~  558 (576)
T PRK05620        507 PTRETAERLRDQLRDRLPNWMLPEY-WTF--VDEIDKTSVGKFDKKDLRQHLADG  558 (576)
T ss_pred             cccccHHHHHHHHHhhCccccCCeE-EEE--eccCCCCCcccCcHHHHHHHHhcC
Confidence               3468999999999999999996 999  899999999999999999998853

>PRK07867 acyl-CoA synthetase; Validated

Probab=99.88  E-value=9.8e-22  Score=147.97  Aligned_cols=112  Identities=30%  Similarity=0.474  Sum_probs=103.3

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      +|||+|||+|+++++|++++.              +|.+||+++.++|+|.+|++++.+++..++.+.+++++.++...+
T Consensus       380 ~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~  459 (529)
T PRK07867        380 GGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFD  459 (529)
T ss_pred             CCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCC
Confidence            689999999999999999986              899999999999999999999999999999999999988776778


Q ss_pred             HHHHHHHHHhh--cCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          71 AEEVKQFVEDQ--VNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        71 ~~~~~~~l~~~--l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                      ..+++++++..  |++++.|.. +.+  ++++|+|++||++|+.|+++...
T Consensus       460 ~~~l~~~~~~~~~l~~~~~P~~-i~~--~~~iP~t~~GKv~r~~L~~~~~~  507 (529)
T PRK07867        460 PDAFAEFLAAQPDLGPKQWPSY-VRV--CAELPRTATFKVLKRQLSAEGVD  507 (529)
T ss_pred             HHHHHHHHHhhccCCcccCCeE-EEE--eeccCCCCCcceeHHHHHHhcCC
Confidence            88999999875  999999995 888  89999999999999999998754

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.88  E-value=1.3e-21  Score=147.16  Aligned_cols=115  Identities=30%  Similarity=0.483  Sum_probs=102.6

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC--
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS--   67 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~--   67 (126)
                      +++||+|||+|+++++|++++.              +|.+||+++.++++|.++++++.++...++.+.++++++.+.  
T Consensus       414 ~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~  493 (546)
T PRK08314        414 GKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARG  493 (546)
T ss_pred             CCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCC
Confidence            4579999999999999999986              899999999999999999999999988888999999887653  


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975          68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH  121 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~  121 (126)
                      ....+++++++++.|+++++|.. +++  ++.+|+|++||++|+.|++...+..
T Consensus       494 ~~~~~~l~~~~~~~l~~~~~P~~-~~~--v~~iP~t~~GKv~r~~L~~~~~~~~  544 (546)
T PRK08314        494 KTTEEEIIAWAREHMAAYKYPRI-VEF--VDSLPKSGSGKILWRQLQEQEKARA  544 (546)
T ss_pred             CCCHHHHHHHHHHhcccCCCCcE-EEE--ecCCCCCCccceeHHHHHHHHhhhc
Confidence            23458999999999999999996 999  8999999999999999988766543

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.88  E-value=1.4e-21  Score=146.16  Aligned_cols=113  Identities=25%  Similarity=0.373  Sum_probs=104.0

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      +++||+|||+++++++|++++.              +|.+||+.+.++++|.++++++.+++..++.+.+++++.++...
T Consensus       406 ~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  485 (533)
T PRK07798        406 GVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARP  485 (533)
T ss_pred             CCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCC
Confidence            4579999999999999999997              89999999999999999999999988888889999988877667


Q ss_pred             CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                      +.+++.+++++.|+++++|.. +++  ++++|+|++||++|+.|++++.+
T Consensus       486 ~~~~l~~~l~~~l~~~~~P~~-i~~--~~~iP~t~~GK~~~~~~~~~~~~  532 (533)
T PRK07798        486 DLAELRAHCRSSLAGYKVPRA-IWF--VDEVQRSPAGKADYRWAKEQAAE  532 (533)
T ss_pred             CHHHHHHHHhhhcccCCCCeE-EEE--cccCCCCCcchhhHHHHhhhhcc
Confidence            889999999999999999995 888  89999999999999999998764

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.88  E-value=1.6e-21  Score=146.96  Aligned_cols=114  Identities=33%  Similarity=0.477  Sum_probs=105.8

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      +.+|||+|||+++++++|++++.              ++.+||+.+.++|+|.+|++++.+++..++...+++++.++..
T Consensus       407 ~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  486 (542)
T PRK06018        407 DDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGET  486 (542)
T ss_pred             cCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCC
Confidence            46899999999999999999986              9999999999999999999999999888888999998887777


Q ss_pred             CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                      .+.+++.++++..++.+++|.. +.+  ++.+|+|++||++|++|++++..
T Consensus       487 ~~~~~l~~~~~~~l~~~~~P~~-i~~--v~~iP~t~~GKi~r~~L~~~~~~  534 (542)
T PRK06018        487 ATREEILKYMDGKIAKWWMPDD-VAF--VDAIPHTATGKILKTALREQFKD  534 (542)
T ss_pred             CCHHHHHHHHHhhCccccCCcE-EEE--eccCCCCCcchhhHHHHHHHHhc
Confidence            7788999999999999999996 888  89999999999999999998876

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=99.88  E-value=1.6e-21  Score=146.81  Aligned_cols=115  Identities=29%  Similarity=0.466  Sum_probs=104.0

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      |+.+|||+|||+|++|++|++++.              +|.+||..+.++++|.++++++.++...++..++++++.+. 
T Consensus       405 ~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~-  483 (536)
T PRK10946        405 FDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP-  483 (536)
T ss_pred             cccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCC-
Confidence            457899999999999999999997              89999999999999999999999998888888998887654 


Q ss_pred             CCCHHHHHHHHHhh-cCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975          68 SVTAEEVKQFVEDQ-VNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH  121 (126)
Q Consensus        68 ~~~~~~~~~~l~~~-l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~  121 (126)
                       .+..++.++++.. +++|+.|.. +.+  ++++|+|++||++|++|++++....
T Consensus       484 -~~~~~l~~~~~~~~l~~~~~P~~-~~~--~~~iP~t~~GKv~r~~L~~~~~~~~  534 (536)
T PRK10946        484 -LKAVQLRRFLREQGIAEFKLPDR-VEC--VDSLPLTAVGKVDKKQLRQWLASRA  534 (536)
T ss_pred             -CCHHHHHHHHHhCCccccccCcE-EEE--eccCCCCCCCcccHHHHHHHHHhhc
Confidence             6778999999886 999999996 898  8999999999999999999877643

>PRK06145 acyl-CoA synthetase; Validated

Probab=99.88  E-value=1.7e-21  Score=144.99  Aligned_cols=111  Identities=29%  Similarity=0.502  Sum_probs=102.9

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      ++||+|||+|+++++|++++.              +|.+||+.+.++++|.++++++..++..++.+.+++++.......
T Consensus       372 ~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  451 (497)
T PRK06145        372 GDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLT  451 (497)
T ss_pred             CCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCC
Confidence            589999999999999999996              899999999999999999999999988888899999987666667


Q ss_pred             HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHh
Q psy4975          71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKV  118 (126)
Q Consensus        71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~  118 (126)
                      ..++.+++++.|++++.|.. +++  ++++|+|++||++|+.|++++.
T Consensus       452 ~~~l~~~~~~~l~~~~~p~~-i~~--v~~iP~t~~GKi~r~~l~~~~~  496 (497)
T PRK06145        452 LEALDRHCRQRLASFKVPRQ-LKV--RDELPRNPSGKVLKRVLRDELN  496 (497)
T ss_pred             HHHHHHHHHHhhhcCCCCCE-EEE--eccCCCCCcccccHHHHHHHhc
Confidence            88999999999999999996 999  9999999999999999999775

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.87  E-value=1.2e-21  Score=147.56  Aligned_cols=112  Identities=36%  Similarity=0.501  Sum_probs=102.9

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      +|||+|||+++++++|+|++.              +|.+||+.+..+|.|.+++++++++...++.+.++++..++...+
T Consensus       408 ~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  487 (539)
T PRK07008        408 DGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVT  487 (539)
T ss_pred             CCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCccC
Confidence            689999999999999999986              899999999999999999999999988888888888877666667


Q ss_pred             HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                      .+++.++++++++++++|.. +++  ++.+|+|++||++|++|++++..
T Consensus       488 ~~~l~~~~~~~l~~~~~P~~-i~~--v~~lP~t~sgKi~r~~l~~~~~~  533 (539)
T PRK07008        488 REELLAFYEGKVAKWWIPDD-VVF--VDAIPHTATGKLQKLKLREQFRD  533 (539)
T ss_pred             HHHHHHHHHhhcccccCCeE-EEE--ecCCCCCCccceeHHHHHHHHHh
Confidence            88999999999999999995 888  89999999999999999998765

>PRK07638 acyl-CoA synthetase; Validated

Probab=99.87  E-value=1.2e-21  Score=145.63  Aligned_cols=112  Identities=31%  Similarity=0.576  Sum_probs=101.2

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      ..+|||+|||++++|++|++++.              +|.+||+++.++|+|.+|++++.+++..++.+.+++..    .
T Consensus       358 ~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~----~  433 (487)
T PRK07638        358 NADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG----S  433 (487)
T ss_pred             ccCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC----C
Confidence            45799999999999999999997              89999999999999999999999998888888888763    3


Q ss_pred             CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975          69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH  121 (126)
Q Consensus        69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~  121 (126)
                      ...+++++++++.++++++|.. +++  ++.+|+|++||++|++|++++....
T Consensus       434 ~~~~~l~~~~~~~l~~~~~p~~-i~~--v~~iP~t~~GKv~r~~L~~~~~~~~  483 (487)
T PRK07638        434 ATKQQLKSFCLQRLSSFKIPKE-WHF--VDEIPYTNSGKIARMEAKSWIENQE  483 (487)
T ss_pred             CCHHHHHHHHHHHhhcccCCcE-EEE--ecccCCCCcccccHHHHHHHHhccc
Confidence            5678999999999999999996 888  8999999999999999999877643

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=99.87  E-value=2.5e-21  Score=145.99  Aligned_cols=114  Identities=34%  Similarity=0.549  Sum_probs=103.8

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      .+|||+|||+|+++++|++++.              +|.+||+++.++++|.++++++++++..++.+.+++++.++...
T Consensus       417 ~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~  496 (547)
T PRK13295        417 ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSL  496 (547)
T ss_pred             CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCC
Confidence            3689999999999999999986              89999999999999999999999999888899999998877666


Q ss_pred             CHHHHHHHHHh-hcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          70 TAEEVKQFVED-QVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        70 ~~~~~~~~l~~-~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      +.+++.+++.+ .++++++|.. +++  ++.+|+|++||++|.+|++++...
T Consensus       497 ~~~~l~~~~~~~~l~~~~~P~~-i~~--v~~lP~t~sgK~~r~~L~~~~~~~  545 (547)
T PRK13295        497 DFEEMVEFLKAQKVAKQYIPER-LVV--RDALPRTPSGKIQKFRLREMLRGE  545 (547)
T ss_pred             CHHHHHHHHHhccCccccCCcE-EEE--eccCCCCCCccccHHHHHHHHhcC
Confidence            77899999986 6999999996 999  899999999999999999987653

>PRK08316 acyl-CoA synthetase; Validated

Probab=99.87  E-value=1.9e-21  Score=145.18  Aligned_cols=116  Identities=33%  Similarity=0.523  Sum_probs=106.5

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      .+|||+|||+|+++++|.+++.              +|.+||+.+.++++|.++++++.+++..++.+.++++++++...
T Consensus       393 ~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  472 (523)
T PRK08316        393 RGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATV  472 (523)
T ss_pred             hCCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCC
Confidence            3789999999999999999986              89999999999999999999999999888899999998877667


Q ss_pred             CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975          70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD  122 (126)
Q Consensus        70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~  122 (126)
                      ..+++.+++++.++++++|.. +++  ++++|+|++||++|.+|++++.....
T Consensus       473 ~~~~l~~~~~~~l~~~~~p~~-i~~--v~~~p~t~~gKi~r~~l~~~~~~~~~  522 (523)
T PRK08316        473 TEDELIAHCRARLAGFKVPKR-VIF--VDELPRNPSGKILKRELRERYAGAFT  522 (523)
T ss_pred             CHHHHHHHHHHhcccCCCCcE-EEE--ecCCCCCCccceeHHHHHHHHHhhcc
Confidence            788999999999999999996 888  89999999999999999999986543

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=99.87  E-value=1.3e-21  Score=148.17  Aligned_cols=112  Identities=32%  Similarity=0.513  Sum_probs=101.5

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      +|||+|||+++++++|++++.              +|.+||+.+.++|+|.++++++.+++..++.+.+++++.++....
T Consensus       431 ~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~  510 (570)
T PRK04319        431 GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPS  510 (570)
T ss_pred             CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCC
Confidence            789999999999999999987              899999999999999999999999998899999999987664333


Q ss_pred             ---HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          71 ---AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        71 ---~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                         .+++..++++.|+.|++|.. +.+  ++.+|+|++||++|++|+++...
T Consensus       511 ~~~~~~l~~~~~~~l~~~~~P~~-i~~--v~~iP~t~~GKv~r~~L~~~~~~  559 (570)
T PRK04319        511 EELKEEIRGFVKKGLGAHAAPRE-IEF--KDKLPKTRSGKIMRRVLKAWELG  559 (570)
T ss_pred             HHHHHHHHHHHHHhcccccCCcE-EEE--eCCCCCCCchhhhHHHHHHHHhC
Confidence               26899999999999999996 889  89999999999999999998654

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=99.87  E-value=1.2e-21  Score=146.52  Aligned_cols=110  Identities=35%  Similarity=0.574  Sum_probs=101.1

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      |+.+|||+|||+|+++++|++++.              +|.+||+++.+++.|.++++++.+++..++.+.++++++.+.
T Consensus       394 ~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~  473 (517)
T PRK08008        394 LEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGE  473 (517)
T ss_pred             ccCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCC
Confidence            456899999999999999999996              899999999999999999999999988888899999998776


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHH
Q psy4975          68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLN  114 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~  114 (126)
                      ..+..++..+++++++++++|.. +++  ++.+|+|++||++|+.|+
T Consensus       474 ~~~~~~l~~~~~~~l~~~~~P~~-~~~--v~~iP~t~~gK~~r~~l~  517 (517)
T PRK08008        474 TLSEEEFFAFCEQNMAKFKVPSY-LEI--RKDLPRNCSGKIIKKNLK  517 (517)
T ss_pred             CCCHHHHHHHHHhhcccccCCcE-EEE--eccCCCCCccceehhhcC
Confidence            67788999999999999999996 888  899999999999998863

>PRK13388 acyl-CoA synthetase; Provisional

Probab=99.87  E-value=2.3e-21  Score=146.22  Aligned_cols=113  Identities=26%  Similarity=0.409  Sum_probs=102.1

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      +|||+|||+|+++++|++++.              +|.+||+++.++|+|.+|++++.+++..|+.+++++++.++...+
T Consensus       379 ~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~  458 (540)
T PRK13388        379 HGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFD  458 (540)
T ss_pred             cCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCC
Confidence            689999999999999999986              899999999999999999999999988888888888887776677


Q ss_pred             HHHHHHHHHhh--cCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          71 AEEVKQFVEDQ--VNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        71 ~~~~~~~l~~~--l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      .++++++++.+  |+++++|.. +++  ++.+|+|++||++|++|+++....
T Consensus       459 ~~~l~~~l~~~~~l~~~~~P~~-~~~--v~~iP~t~~GKv~R~~L~~~~~~~  507 (540)
T PRK13388        459 PDAFAAFLAAQPDLGTKAWPRY-VRI--AADLPSTATNKVLKRELIAQGWAT  507 (540)
T ss_pred             HHHHHHHHHhhccCCcccCCcE-EEE--eccCCCCCcceeeHHhHHHhccCC
Confidence            78899999864  999999995 888  899999999999999999977554

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.87  E-value=3e-21  Score=146.22  Aligned_cols=114  Identities=32%  Similarity=0.591  Sum_probs=105.1

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      +|||+|||+|+++++|++++.              +|.+||+++..++.|.++++++.++...++.+.++++++++...+
T Consensus       444 ~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~  523 (573)
T PRK05605        444 DGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALD  523 (573)
T ss_pred             CCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCC
Confidence            479999999999999999986              899999999999999999999999988888999999988776777


Q ss_pred             HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975          71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH  121 (126)
Q Consensus        71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~  121 (126)
                      ..++++++++.|+.+++|.. +++  ++++|+|++||++|++|++++.++.
T Consensus       524 ~~~l~~~~~~~l~~~~~p~~-i~~--~~~iP~t~~GKi~r~~L~~~~~~~~  571 (573)
T PRK05605        524 PEGLRAYCREHLTRYKVPRR-FYH--VDELPRDQLGKVRRREVREELLEKL  571 (573)
T ss_pred             HHHHHHHHHHhCccccCCcE-EEE--eccCCCCCcccccHHHHHHHHHHHh
Confidence            89999999999999999996 888  8999999999999999999987654

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=99.87  E-value=1.7e-21  Score=146.22  Aligned_cols=109  Identities=28%  Similarity=0.566  Sum_probs=98.9

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      ++++|||+|||+|+++++|++++.              +|.+||+.+.++|+|.++++++.++...++.+.+++++.++ 
T Consensus       404 ~~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~-  482 (527)
T TIGR02275       404 FDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDP-  482 (527)
T ss_pred             cCcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCC-
Confidence            457899999999999999999996              89999999999999999999999999888889999888755 


Q ss_pred             CCCHHHHHHHHHhh-cCCCCCCCccEEEeecCcccCCCCCccchHHHH
Q psy4975          68 SVTAEEVKQFVEDQ-VNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLN  114 (126)
Q Consensus        68 ~~~~~~~~~~l~~~-l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~  114 (126)
                      ..+..++++++++. ++.+++|.. +.+  ++++|+|++||++|+.|+
T Consensus       483 ~~~~~~l~~~l~~~~l~~~~~P~~-i~~--v~~iP~t~sGKv~r~~L~  527 (527)
T TIGR02275       483 ALKAAQLRRFLRERGLAEYKLPDR-VEF--IDSLPLTAVGKIDKKALR  527 (527)
T ss_pred             CCCHHHHHHHHHhCCCccccCCCE-EEE--eccCCCCCccceeHHhcC
Confidence            46778999999985 999999996 998  899999999999999863

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK13382 acyl-CoA synthetase; Provisional

Probab=99.87  E-value=1.6e-21  Score=146.87  Aligned_cols=108  Identities=37%  Similarity=0.661  Sum_probs=100.4

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      +|||+|||+++++++|++++.              +|.+||+.+.++|+|.++++++.+++..++.+.+++++.++....
T Consensus       415 ~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~  494 (537)
T PRK13382        415 DGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASAT  494 (537)
T ss_pred             CCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCC
Confidence            799999999999999999997              999999999999999999999999988889999999988776677


Q ss_pred             HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHH
Q psy4975          71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNE  115 (126)
Q Consensus        71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~  115 (126)
                      .++++++++..|+.+++|.. +.+  ++++|+|++||++|++|++
T Consensus       495 ~~~l~~~l~~~l~~~~~P~~-i~~--v~~lP~t~~gK~~r~~L~~  536 (537)
T PRK13382        495 PETLKQHVRDNLANYKVPRD-IVV--LDELPRGATGKILRRELQA  536 (537)
T ss_pred             HHHHHHHHHHhccCCCCCcE-EEE--eccCCCCCCCCCcHHhhCC
Confidence            78999999999999999995 998  8999999999999999864

>PRK05857 acyl-CoA synthetase; Validated

Probab=99.87  E-value=1.8e-21  Score=146.75  Aligned_cols=117  Identities=32%  Similarity=0.493  Sum_probs=99.0

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      +|||+|||+|++|++|++++.              +|.+||+++..+|+|.+|++++.++...++.+.++++..+.....
T Consensus       401 ~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~  480 (540)
T PRK05857        401 DGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDES  480 (540)
T ss_pred             CCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCCChh
Confidence            789999999999999999986              999999999999999999999999888787888877765442211


Q ss_pred             -H----HHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccCc
Q psy4975          71 -A----EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDDV  124 (126)
Q Consensus        71 -~----~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~~  124 (126)
                       .    +.+...+++.++++++|.. +.+  ++.+|+|++||++|+.|++++.+.....
T Consensus       481 ~~~~l~~~~~~~~~~~l~~~~~P~~-v~~--~~~iP~t~~GKi~r~~l~~~~~~~~~~~  536 (540)
T PRK05857        481 AARALKHTIAARFRRESEPMARPST-IVI--VTDIPRTQSGKVMRASLAAAATADKARV  536 (540)
T ss_pred             hHHHHHHHHHHHHHhhhccccCCeE-EEE--hhcCCCCCCcceeHHHHHHhhhhcccee
Confidence             2    3455566677999999995 999  8999999999999999999998876543

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=99.87  E-value=3.4e-21  Score=149.57  Aligned_cols=111  Identities=20%  Similarity=0.161  Sum_probs=97.3

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      .+|||+|||+|++|++|++++.              +|.+||+++.+++.+.++++++.+++..++.+++++.   +...
T Consensus       589 ~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~---~~~~  665 (718)
T PRK08043        589 ERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTT---DSEL  665 (718)
T ss_pred             cCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEc---Cccc
Confidence            4799999999999999999997              9999999999998888888888888888887777653   2345


Q ss_pred             CHHHHHHHHHhh-cCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          70 TAEEVKQFVEDQ-VNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        70 ~~~~~~~~l~~~-l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      +.+++.+++++. ++.|++|+. +.+  ++++|+|++||++|++|++++...
T Consensus       666 ~~~~l~~~~~~~~l~~~~vP~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~  714 (718)
T PRK08043        666 TREKLQQYAREHGVPELAVPRD-IRY--LKQLPLLGSGKPDFVTLKSMVDEP  714 (718)
T ss_pred             CHHHHHHHHHhcCCCcccCCce-EEE--ecccCcCCCCCcCHHHHHHHHhcc
Confidence            677899999987 999999996 999  999999999999999999988764

>PRK07514 malonyl-CoA synthase; Validated

Probab=99.87  E-value=5.1e-21  Score=142.59  Aligned_cols=115  Identities=35%  Similarity=0.519  Sum_probs=104.8

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      |..+|||+|||+++++++|++++.              +|.+||+++.++++|.++++++.+++..++.++++++.....
T Consensus       373 ~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~  452 (504)
T PRK07514        373 FRADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGA  452 (504)
T ss_pred             cccCCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCC
Confidence            345889999999999999999986              899999999999999999999999888888889999888766


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                      ..+.+++.+.+++.++++++|.. +++  ++.+|+|++||++|++|++++..
T Consensus       453 ~~~~~~l~~~~~~~l~~~~~p~~-i~~--v~~~p~t~~gK~~r~~l~~~~~~  501 (504)
T PRK07514        453 ALDEAAILAALKGRLARFKQPKR-VFF--VDELPRNTMGKVQKNLLREQYAD  501 (504)
T ss_pred             CCCHHHHHHHHHhhcccCCCCcE-EEE--eccCCCCCCcceeHHHHHHHHHh
Confidence            67789999999999999999996 888  89999999999999999998764

>PRK07787 acyl-CoA synthetase; Validated

Probab=99.87  E-value=2.9e-21  Score=143.34  Aligned_cols=109  Identities=39%  Similarity=0.631  Sum_probs=98.6

Q ss_pred             CCCCceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      .++|||+|||+|+++++|++++.               +|.+||+.+.+++.|.++++++.++...++.+.+++++.  .
T Consensus       347 ~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~--~  424 (471)
T PRK07787        347 TADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGA--D  424 (471)
T ss_pred             cCCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeC--C
Confidence            45899999999999999999986               899999999999999999999999888888899998873  3


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHH
Q psy4975          68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNET  116 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~  116 (126)
                      ..+.+++.+++++.++++++|.. +++  ++.+|+|++||++|+.|+++
T Consensus       425 ~~~~~~l~~~l~~~l~~~~~P~~-i~~--~~~iP~~~~GKi~r~~L~~~  470 (471)
T PRK07787        425 DVAADELIDFVAQQLSVHKRPRE-VRF--VDALPRNAMGKVLKKQLLSE  470 (471)
T ss_pred             CCCHHHHHHHHHhhcccccCCcE-EEE--eccCCCCCCccccHHHhccC
Confidence            46778999999999999999995 888  89999999999999999763

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.87  E-value=4.5e-21  Score=144.98  Aligned_cols=116  Identities=34%  Similarity=0.553  Sum_probs=106.5

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      +|||+|||+++++++|++++.              +|.+||+++.++++|.++++++.++...++.+.++++..++...+
T Consensus       430 ~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~  509 (563)
T PRK06710        430 DGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECS  509 (563)
T ss_pred             cCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCC
Confidence            689999999999999999986              899999999999999999999999988888999999888776677


Q ss_pred             HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccC
Q psy4975          71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDD  123 (126)
Q Consensus        71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~  123 (126)
                      .+++.+++++.++.+++|.. +.+  ++++|+|++||++|++|++++..+.++
T Consensus       510 ~~~l~~~~~~~l~~~~~P~~-~~~--v~~iP~t~~GKi~r~~L~~~~~~~~~~  559 (563)
T PRK06710        510 EEELNQFARKYLAAYKVPKV-YEF--RDELPKTTVGKILRRVLIEEEKRKNED  559 (563)
T ss_pred             HHHHHHHHHHhcccccCCcE-EEE--cccCCCCccchhhHHHHHHHHhhcCcc
Confidence            88999999999999999995 888  999999999999999999998876653

>PRK08315 AMP-binding domain protein; Validated

Probab=99.86  E-value=6.6e-21  Score=143.73  Aligned_cols=117  Identities=32%  Similarity=0.601  Sum_probs=105.7

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      +.++||+|||+|+++++|++++.              ++.+||+++.++++|.++++++++++..++.+.+++++..+..
T Consensus       424 ~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  503 (559)
T PRK08315        424 DADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGAT  503 (559)
T ss_pred             CCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCC
Confidence            46899999999999999999986              8999999999999999999999998887788888888876666


Q ss_pred             CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975          69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD  122 (126)
Q Consensus        69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~  122 (126)
                      ...++++.++.+.++.+++|.. +++  ++.+|+|++||++|.+|++++....+
T Consensus       504 ~~~~~l~~~l~~~l~~~~~P~~-i~~--v~~lP~t~~GK~~r~~L~~~~~~~~~  554 (559)
T PRK08315        504 LTEEDVRDFCRGKIAHYKIPRY-IRF--VDEFPMTVTGKIQKFKMREMMIEELG  554 (559)
T ss_pred             CCHHHHHHHHHhhcccccCCcE-EEE--cccCCCCCCCceeHHHHHHHHHhhhc
Confidence            6778999999999999999995 999  99999999999999999998876544

>PRK13390 acyl-CoA synthetase; Provisional

Probab=99.86  E-value=3e-21  Score=143.98  Aligned_cols=107  Identities=32%  Similarity=0.444  Sum_probs=96.0

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      +||++|||+|+++++|++++.              +|.+||+++.++++|.++++++++++..++.+.+++++..+....
T Consensus       378 ~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~  457 (501)
T PRK13390        378 PFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGS  457 (501)
T ss_pred             CceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcc
Confidence            689999999999999999997              899999999999999999999999998888899988877553322


Q ss_pred             ---HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHH
Q psy4975          71 ---AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLN  114 (126)
Q Consensus        71 ---~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~  114 (126)
                         .+++.++++..|+.++.|.. +++  ++++|+|++||++|++|+
T Consensus       458 ~~~~~~l~~~~~~~l~~~~~P~~-~~~--~~~iP~t~~GKi~r~~L~  501 (501)
T PRK13390        458 DELARELIDYTRSRIAHYKAPRS-VEF--VDELPRTPTGKLVKGLLR  501 (501)
T ss_pred             hhhHHHHHHHHHHhcccCCCCcE-EEE--eccCCCCCccceehhhcC
Confidence               46889999999999999995 999  899999999999999874

>PRK06164 acyl-CoA synthetase; Validated

Probab=99.86  E-value=7.5e-21  Score=143.00  Aligned_cols=117  Identities=27%  Similarity=0.411  Sum_probs=103.6

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      |+.+|||+|||+|+++++|++++.              +|.+||+.+.++++|.++++++.+ ...+..+.+++++.++.
T Consensus       402 ~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~-~~~~~~~~~~vv~~~~~  480 (540)
T PRK06164        402 LTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGAT-RDGKTVPVAFVIPTDGA  480 (540)
T ss_pred             ccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecC-CCCceeEEEEEEeCCCC
Confidence            456899999999999999999886              899999999999999999999887 34456788888887776


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCC---ccchHHHHHHHhcccc
Q psy4975          68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG---KVKRKDLNETKVMRHD  122 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~G---Kv~r~~l~~~~~~~~~  122 (126)
                      ..+.+++.++++++++++++|.. +++  ++.+|+|++|   |++|+.|++++.....
T Consensus       481 ~~~~~~l~~~~~~~l~~~~~P~~-i~~--~~~~P~t~~g~~~Ki~r~~L~~~~~~~~~  535 (540)
T PRK06164        481 SPDEAGLMAACREALAGFKVPAR-VQV--VEAFPVTESANGAKIQKHRLREMAQARLA  535 (540)
T ss_pred             CCCHHHHHHHHHhhcccCcCCcE-EEE--ecCCCCCCCCccccccHHHHHHHHHHhhh
Confidence            67889999999999999999995 888  8999999999   9999999998876543

>PRK06188 acyl-CoA synthetase; Validated

Probab=99.86  E-value=8.1e-21  Score=142.37  Aligned_cols=113  Identities=38%  Similarity=0.612  Sum_probs=104.2

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      .+|||+|||+++++++|++++.              +|.+||+++..+++|.++++++.+++..++.+.+++++.+....
T Consensus       391 ~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  470 (524)
T PRK06188        391 RDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAV  470 (524)
T ss_pred             cCCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCC
Confidence            3689999999999999999986              89999999999999999999999988888899999998877667


Q ss_pred             CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                      ..+++.+++++.+++++.|.. +.+  ++.+|+|++||++|.+|++++..
T Consensus       471 ~~~~l~~~~~~~l~~~~~p~~-i~~--v~~~P~t~~gKi~r~~L~~~~~~  517 (524)
T PRK06188        471 DAAELQAHVKERKGSVHAPKQ-VDF--VDSLPLTALGKPDKKALRARYWE  517 (524)
T ss_pred             CHHHHHHHHHHhcccCCCCcE-EEE--ecCCCCCccccccHHHHHHHHHh
Confidence            788999999999999999996 999  89999999999999999999854

>PLN03052 acetate--CoA ligase; Provisional

Probab=99.86  E-value=5.8e-21  Score=148.62  Aligned_cols=114  Identities=28%  Similarity=0.340  Sum_probs=96.8

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHh-cCCCcceEEEEeeecCCCC-CeeEEEEEeC--C
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFR-QHPDVEDVAVIGIPHDVFG-ELPAAVVVPK--P   65 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~-~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~--~   65 (126)
                      +++||+|||++++|++|++++.              ++.|||+++. .+|+|.++++++++++..| +.+++++++.  +
T Consensus       587 g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~  666 (728)
T PLN03052        587 GKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPP  666 (728)
T ss_pred             CCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCC
Confidence            3459999999999999999997              9999999995 7899999999999998776 7899999987  4


Q ss_pred             CCCCCHHHHH----HHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          66 NSSVTAEEVK----QFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        66 ~~~~~~~~~~----~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      +...+.++++    +.+++.|+++++|+. +++  +++||+|++||++|+.|++++...
T Consensus       667 g~~~~~~~L~~~i~~~i~~~l~~~~~p~~-i~~--v~~lP~T~sGKi~Rr~Lr~~~~~~  722 (728)
T PLN03052        667 GSNPDLNELKKIFNSAIQKKLNPLFKVSA-VVI--VPSFPRTASNKVMRRVLRQQLAQE  722 (728)
T ss_pred             CCCCCHHHHHHHHHHHHHhhcCCccCCCE-EEE--cCCCCCCCchHHHHHHHHHHHHhh
Confidence            4444444444    456677899999985 999  999999999999999999988754

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.86  E-value=9.4e-21  Score=141.28  Aligned_cols=117  Identities=29%  Similarity=0.510  Sum_probs=103.8

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      .+|||+|||+++++++|.+++.              ++.+||..+.++|+|.+|++++..++..++.+.+++++.++...
T Consensus       367 ~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  446 (502)
T PRK08276        367 PHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADA  446 (502)
T ss_pred             CCCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCC
Confidence            4599999999999999999986              89999999999999999999999998888999999998765433


Q ss_pred             CH---HHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccC
Q psy4975          70 TA---EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDD  123 (126)
Q Consensus        70 ~~---~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~  123 (126)
                      +.   +++.+.+++.+++++.|.. +++  ++++|+|++||++|+.|++.+....+.
T Consensus       447 ~~~~~~~i~~~~~~~l~~~~~p~~-i~~--~~~lP~t~~GKi~r~~L~~~~~~~~~~  500 (502)
T PRK08276        447 GDALAAELIAWLRGRLAHYKCPRS-IDF--EDELPRTPTGKLYKRRLRDRYWEGRQR  500 (502)
T ss_pred             ChhhHHHHHHHHHhhccCCCCCcE-EEE--ecCCCCCcccchhHHHHHHHHHhhhhh
Confidence            33   4899999999999999996 888  899999999999999999998765543

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.86  E-value=6.5e-21  Score=142.06  Aligned_cols=110  Identities=37%  Similarity=0.687  Sum_probs=100.8

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      .++|||+|||+|+++++|++++.              ++.+||+.+.++++|.++++++.+++..++.+.++++..++..
T Consensus       389 ~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~  468 (513)
T PRK07656        389 DADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAE  468 (513)
T ss_pred             ccCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCC
Confidence            35899999999999999999986              8999999999999999999999998888888899998876667


Q ss_pred             CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHH
Q psy4975          69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNE  115 (126)
Q Consensus        69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~  115 (126)
                      .+..++.++++..|+++++|.. +.+  ++++|+|++||++|+.|++
T Consensus       469 ~~~~~l~~~~~~~l~~~~~p~~-i~~--v~~iP~t~~gK~~r~~l~~  512 (513)
T PRK07656        469 LTEEELIAYCREHLAKYKVPRS-IEF--LDELPKNATGKVLKRALRE  512 (513)
T ss_pred             CCHHHHHHHHHhhcccccCCCE-EEE--ecCCCCCCccceeHHHHhc
Confidence            7788999999999999999996 888  8999999999999999875

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.86  E-value=1.4e-20  Score=140.70  Aligned_cols=118  Identities=29%  Similarity=0.530  Sum_probs=106.4

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      ..+|||+|||+++++++|++++.              ++.+||+.+.++++|.++++++.++...++.+.+++++..+..
T Consensus       376 ~~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  455 (509)
T PRK12406        376 DRGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGAT  455 (509)
T ss_pred             cCCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCC
Confidence            35899999999999999999986              8999999999999999999999998888888888888876655


Q ss_pred             CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccC
Q psy4975          69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDD  123 (126)
Q Consensus        69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~  123 (126)
                      ...+++..++++.++++++|.. +.+  ++.+|+|++||++|++|++.+......
T Consensus       456 ~~~~~l~~~l~~~l~~~~~P~~-i~~--~~~iP~t~~GK~~r~~L~~~~~~~~~~  507 (509)
T PRK12406        456 LDEADIRAQLKARLAGYKVPKH-IEI--MAELPREDSGKIFKRRLRDPYWANAGR  507 (509)
T ss_pred             CCHHHHHHHHHHhcccCCCCcE-EEE--eccCCCCCccchhHHHHHHHHHhhccc
Confidence            6789999999999999999996 888  899999999999999999988766543

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=99.86  E-value=6.1e-21  Score=143.58  Aligned_cols=109  Identities=33%  Similarity=0.577  Sum_probs=99.7

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      +++|||+|||+|+++++|++++.              +|.+||+++.++++|.++++++.++...++.+.+++++..+..
T Consensus       414 ~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~  493 (538)
T TIGR03208       414 DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCT  493 (538)
T ss_pred             cCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCC
Confidence            35899999999999999999997              8999999999999999999999998888889999999877666


Q ss_pred             CCHHHHHHHHHh-hcCCCCCCCccEEEeecCcccCCCCCccchHHHH
Q psy4975          69 VTAEEVKQFVED-QVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLN  114 (126)
Q Consensus        69 ~~~~~~~~~l~~-~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~  114 (126)
                      .+..++.++++. .++.+++|.. +.+  ++.+|+|++||++|++|+
T Consensus       494 ~~~~~l~~~~~~~~l~~~~~P~~-i~~--v~~iP~t~~gKv~r~~L~  537 (538)
T TIGR03208       494 LDFAAMVAFLKAQKVALQYIPER-LEV--VDALPATPAGKIQKFRLR  537 (538)
T ss_pred             CCHHHHHHHHHhcchhhccCCcE-EEE--eccCCCCCccccchHhhc
Confidence            778899999985 7999999996 888  999999999999999985

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK06178 acyl-CoA synthetase; Validated

Probab=99.86  E-value=8.7e-21  Score=143.53  Aligned_cols=111  Identities=33%  Similarity=0.557  Sum_probs=101.6

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      +|||+|||+++++++|++++.              +|.+||+.+.++++|.++++++.+++..++.+.+++++..+...+
T Consensus       441 dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~  520 (567)
T PRK06178        441 DGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLT  520 (567)
T ss_pred             CCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcCC
Confidence            789999999999999999986              899999999999999999999999888888888999887766677


Q ss_pred             HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                      .+++.+++++.++.+++|.  +++  ++++|+|++||++|++|+++++.
T Consensus       521 ~~~l~~~~~~~l~~~~~p~--i~~--v~~iP~t~~GKv~r~~l~~~~~~  565 (567)
T PRK06178        521 AAALQAWCRENMAVYKVPE--IRI--VDALPMTATGKVRKQDLQALAEE  565 (567)
T ss_pred             HHHHHHHHHhcCcccCCce--EEE--eccCCCCCccceeHHHHHHHHHh
Confidence            8899999999999999995  677  79999999999999999998865

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=99.86  E-value=8.7e-21  Score=141.29  Aligned_cols=111  Identities=22%  Similarity=0.202  Sum_probs=94.3

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeee-cCCCCCeeEEEEEeCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIP-HDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~~~~~~   68 (126)
                      +++||+|||+|+++++ +|++.              +|.+||+.+.++|+|.+|+++++. ....++.+++++++.....
T Consensus       372 ~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~  450 (502)
T TIGR01734       372 GQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDF  450 (502)
T ss_pred             CcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEeccccc
Confidence            4579999999999966 88886              999999999999999999999876 4445677888888765432


Q ss_pred             CC----HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHh
Q psy4975          69 VT----AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKV  118 (126)
Q Consensus        69 ~~----~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~  118 (126)
                      ..    .+++++.+++.+++++.|+. +++  ++.+|+|++||++|++|++++.
T Consensus       451 ~~~~~~~~~i~~~~~~~l~~~~~P~~-~~~--v~~lP~t~~gKv~r~~l~~~~~  501 (502)
T TIGR01734       451 EKEFQLTKAIKKELKKSLPAYMIPRK-FIY--RDQLPLTANGKIDRKALAEEVN  501 (502)
T ss_pred             ccchhhHHHHHHHHhhhChhhcCCcE-EEE--ccccCCCCCCcccHHHHHHhhc
Confidence            22    26789999999999999996 999  9999999999999999999764

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.85  E-value=1.2e-20  Score=142.76  Aligned_cols=111  Identities=34%  Similarity=0.593  Sum_probs=99.9

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      |+.+|||+|||+|+++++|++++.              +|.+||+.+.+++.|.++++++.++...++.+.+++++.+. 
T Consensus       437 ~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-  515 (562)
T PRK12492        437 LDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDP-  515 (562)
T ss_pred             ccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCC-
Confidence            346799999999999999999996              89999999999999999999999988888888888877543 


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHH
Q psy4975          68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNET  116 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~  116 (126)
                      ....+++.+++.++++++++|.. +.+  ++.+|+|++||++|++|+++
T Consensus       516 ~~~~~~i~~~~~~~l~~~~~P~~-i~~--~~~~P~t~~GK~~r~~L~~~  561 (562)
T PRK12492        516 GLSVEELKAYCKENFTGYKVPKH-IVL--RDSLPMTPVGKILRRELRDI  561 (562)
T ss_pred             CCCHHHHHHHHHHhcccccCCcE-EEE--eccCCCCCCCceeHHHHHhh
Confidence            35678999999999999999996 999  89999999999999999875

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.85  E-value=9.7e-21  Score=143.02  Aligned_cols=110  Identities=35%  Similarity=0.598  Sum_probs=98.7

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      +++|||+|||+|+++++|++++.              +|.+||+.+..+++|.++++++.++...++.+.++++.. ...
T Consensus       434 ~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~-~~~  512 (560)
T PRK08751        434 DADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKK-DPA  512 (560)
T ss_pred             ccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcC-CCC
Confidence            46799999999999999999987              899999999999999999999999888888787777654 334


Q ss_pred             CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHH
Q psy4975          69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNET  116 (126)
Q Consensus        69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~  116 (126)
                      ...+++++++.+.++++++|.. +++  ++.+|+|++||++|+.|++.
T Consensus       513 ~~~~~l~~~~~~~l~~~~~P~~-v~~--v~~lP~t~~gKv~r~~L~~~  557 (560)
T PRK08751        513 LTAEDVKAHARANLTGYKQPRI-IEF--RKELPKTNVGKILRRELRDA  557 (560)
T ss_pred             CCHHHHHHHHHHhhhhccCCeE-EEE--hhhCCCCccccccHHHHHHh
Confidence            5678999999999999999995 999  99999999999999999876

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=99.85  E-value=5.4e-21  Score=143.75  Aligned_cols=112  Identities=27%  Similarity=0.385  Sum_probs=92.3

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      +.+|||+|||+|+++ +|+|+++              +|.+||+++.+||+|.+|++++++++..++...++++.... .
T Consensus       393 ~~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~-~  470 (525)
T PRK05851        393 DPDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFR-G  470 (525)
T ss_pred             CCCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEec-C
Confidence            357999999999997 7999987              99999999999999999999999988877766666554311 2


Q ss_pred             CCHHHHHHHHHhhcCCC--CCCCccEEEeecC--cccCCCCCccchHHHHHHHhc
Q psy4975          69 VTAEEVKQFVEDQVNPS--KRLSGGVFLCSFD--FIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        69 ~~~~~~~~~l~~~l~~~--~~p~~~~~~~~~~--~lp~t~~GKv~r~~l~~~~~~  119 (126)
                      .+.+.+.+.++++++.+  ++|+. +.+  ++  .||+|++||++|+.|++.+++
T Consensus       471 ~~~~~~~~~~~~~l~~~l~~~P~~-~~~--v~~~~lP~t~~GKi~r~~L~~~~~~  522 (525)
T PRK05851        471 PDEAGARSEVVQRVASECGVVPSD-VVF--VAPGSLPRTSSGKLRRLAVKRSLEA  522 (525)
T ss_pred             cchHHHHHHHHHHHHHHhCCCccE-EEE--ECCCCcCcCcchHHHHHHHHHHHHh
Confidence            34456677777777776  89995 888  55  999999999999999998865

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=99.85  E-value=1.2e-20  Score=140.75  Aligned_cols=108  Identities=20%  Similarity=0.318  Sum_probs=99.1

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      ++||+|||+|+++++|++++.              +|.+||+.+.++|.|.++++++.+++..++.++++++.......+
T Consensus       393 ~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~  472 (515)
T TIGR03098       393 ELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELD  472 (515)
T ss_pred             ccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCCC
Confidence            468999999999999999986              899999999999999999999999988899999998876666677


Q ss_pred             HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHH
Q psy4975          71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNE  115 (126)
Q Consensus        71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~  115 (126)
                      ..+++++++++++++++|.. +++  ++.+|+|++||++|++|++
T Consensus       473 ~~~l~~~l~~~l~~~~~p~~-i~~--v~~iP~t~~GK~~r~~L~~  514 (515)
T TIGR03098       473 RAALLAECRARLPNYMVPAL-IHV--RQALPRNANGKIDRKALAA  514 (515)
T ss_pred             HHHHHHHHHhhCccccCCCE-EEE--eccCCCCCCCCCcHHHhcc
Confidence            88999999999999999995 999  8999999999999999864

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=99.85  E-value=1.6e-20  Score=141.44  Aligned_cols=117  Identities=35%  Similarity=0.523  Sum_probs=103.6

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCC-CC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP-NS   67 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~   67 (126)
                      +.+|||+|||+++++++|++++.              +|.+||+++.++++|.++++++.+++..++.+.+++++.+ ..
T Consensus       407 ~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~  486 (547)
T PRK06087        407 DEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHH  486 (547)
T ss_pred             CCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCC
Confidence            45799999999999999999997              8999999999999999999999999888889999998875 34


Q ss_pred             CCCHHHHHHHHH-hhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975          68 SVTAEEVKQFVE-DQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD  122 (126)
Q Consensus        68 ~~~~~~~~~~l~-~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~  122 (126)
                      ..+.+++.+++. ..++++++|.. +.+  ++.+|+|++||++|+.|++++..+..
T Consensus       487 ~~~~~~~~~~~~~~~l~~~~~P~~-i~~--v~~iP~t~sGK~~r~~l~~~~~~~~~  539 (547)
T PRK06087        487 SLTLEEVVAFFSRKRVAKYKYPEH-IVV--IDKLPRTASGKIQKFLLRKDIMRRLT  539 (547)
T ss_pred             CCCHHHHHHHHHhccccccCCCeE-EEE--eccCCCCCCCcCcHHHHHHHHHHHhh
Confidence            456678888875 46999999996 999  89999999999999999998877643

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.85  E-value=6.2e-21  Score=146.14  Aligned_cols=115  Identities=23%  Similarity=0.370  Sum_probs=96.8

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhc-CCCcce--EEEEeeec----------------
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQ-HPDVED--VAVIGIPH----------------   50 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~-~~~v~~--~~~~~~~~----------------   50 (126)
                      ++|||+|||+|+++ +|+|+|+              +|.+||+.+.+ +|.|.+  ++++++++                
T Consensus       462 ~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~  540 (631)
T PRK07769        462 DALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLK  540 (631)
T ss_pred             CCCeeeccccccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccc
Confidence            36999999999995 8999997              99999999986 899997  89999888                


Q ss_pred             ---CCCCCeeEEEEEeCCC-CCCCHHHHHHHHHhhcCC-CCC-CCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          51 ---DVFGELPAAVVVPKPN-SSVTAEEVKQFVEDQVNP-SKR-LSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        51 ---~~~~~~~~~~v~~~~~-~~~~~~~~~~~l~~~l~~-~~~-p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                         +.+++.+++++++.++ ...+.+++.+++++.++. +++ |+. +.++..+.||+|++||++|++|++.+...
T Consensus       541 ~~~~~~ge~~~a~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~-~~~v~~~~lP~t~~GKi~r~~l~~~~~~~  615 (631)
T PRK07769        541 FDPEDTSEQLVIVAERAPGAHKLDPQPIADDIRAAIAVRHGVTVRD-VLLVPAGSIPRTSSGKIARRACRAAYLDG  615 (631)
T ss_pred             cccCCCCccEEEEEEecCccccccHHHHHHHHHHHHHHHcCCCccE-EEEECCCccccCCCcHHHHHHHHHHHHcC
Confidence               4577889999988766 345678999999999986 564 775 77833348999999999999999987643

>PRK09274 peptide synthase; Provisional

Probab=99.85  E-value=8.3e-21  Score=143.16  Aligned_cols=114  Identities=21%  Similarity=0.348  Sum_probs=93.8

Q ss_pred             CCCC--ceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCC
Q psy4975           3 DDDG--WLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN   66 (126)
Q Consensus         3 ~~~g--~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~   66 (126)
                      +.+|  ||+|||+|++|++|+|++.              +|.+||+++.+||+|.+|++++++++. ++.+.+++++.++
T Consensus       415 ~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~-~~~~~~~v~~~~~  493 (552)
T PRK09274        415 DGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVGVGVPG-AQRPVLCVELEPG  493 (552)
T ss_pred             cCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccceeEEEEeCCCC-CceEEEEEEccCc
Confidence            3456  9999999999999999997              999999999999999999999998754 5677888888776


Q ss_pred             CCCCHHHHHHHHHhhcCCC---CCCCccEEEeecCcccCC--CCCccchHHHHHHHhcc
Q psy4975          67 SSVTAEEVKQFVEDQVNPS---KRLSGGVFLCSFDFIPRT--MSGKVKRKDLNETKVMR  120 (126)
Q Consensus        67 ~~~~~~~~~~~l~~~l~~~---~~p~~~~~~~~~~~lp~t--~~GKv~r~~l~~~~~~~  120 (126)
                      ...+..++.+.+++.+..+   +.|.. +++  ++.||+|  ++||++|++|++++...
T Consensus       494 ~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~~--~~~lP~t~~~~GKi~r~~L~~~~~~~  549 (552)
T PRK09274        494 VACSKSALYQELRALAAAHPHTAGIER-FLI--HPSFPVDIRHNAKIFREKLAVWAAKQ  549 (552)
T ss_pred             cccchHHHhhhhHHHHHhcCCCcceeE-Eec--cCCCCccccccccccHHHHHHHHHHh
Confidence            5555555666666665544   56664 778  8999999  79999999999987654

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.85  E-value=1.6e-20  Score=137.51  Aligned_cols=106  Identities=25%  Similarity=0.379  Sum_probs=95.8

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      .+|||+|||+|+++++|++++.              +|.+||+.+.++++|.++++++.+++..++.+.++++...  ..
T Consensus       289 ~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~--~~  366 (414)
T PRK08308        289 GDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHE--EI  366 (414)
T ss_pred             CCceEECCceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC--CC
Confidence            4689999999999999999987              9999999999999999999999999888888888887653  45


Q ss_pred             CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHH
Q psy4975          70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLN  114 (126)
Q Consensus        70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~  114 (126)
                      +..++++++++.++++++|.. +++  ++.+|+|++||++|+.|+
T Consensus       367 ~~~~l~~~l~~~l~~~~~P~~-i~~--v~~iP~t~~GKi~r~~~~  408 (414)
T PRK08308        367 DPVQLREWCIQHLAPYQVPHE-IES--VTEIPKNANGKVSRKLLE  408 (414)
T ss_pred             CHHHHHHHHHHhCccccCCcE-EEE--eccCCCCCCcCeehhhhh
Confidence            678999999999999999996 999  899999999999999543

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.85  E-value=2.5e-20  Score=140.47  Aligned_cols=115  Identities=30%  Similarity=0.588  Sum_probs=103.1

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC-CC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS-SV   69 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~   69 (126)
                      +|||+|||+++++++|++++.              ++.+||+++.++++|.+|++++.++...++...+++++.... ..
T Consensus       398 ~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  477 (542)
T PRK07786        398 GGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAAL  477 (542)
T ss_pred             CCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCC
Confidence            689999999999999999886              899999999999999999999998888788888888876543 35


Q ss_pred             CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975          70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD  122 (126)
Q Consensus        70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~  122 (126)
                      ..+++.+++++.+++++.|.. +++  ++.+|+|++||++|++|++++.....
T Consensus       478 ~~~~l~~~l~~~l~~~~~P~~-i~~--v~~iP~t~~GKv~r~~L~~~~~~~~~  527 (542)
T PRK07786        478 TLEDLAEFLTDRLARYKHPKA-LEI--VDALPRNPAGKVLKTELRERYGACVN  527 (542)
T ss_pred             CHHHHHHHHHhhccCCCCCCE-EEE--eccCCCCCcccccHHHHHHHHHhhhc
Confidence            678999999999999999996 999  89999999999999999999987543

>PLN02736 long-chain acyl-CoA synthetase

Probab=99.85  E-value=2.4e-21  Score=148.99  Aligned_cols=118  Identities=31%  Similarity=0.379  Sum_probs=92.7

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN   66 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~   66 (126)
                      |+++|||+|||+|++|++|+|+|.               +|.+||+++.+||.|.+|+|++.   ..++.+.|++++..+
T Consensus       483 ~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~~  559 (651)
T PLN02736        483 IDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDPE  559 (651)
T ss_pred             hccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec---CCCceeEEEEEeCHH
Confidence            467899999999999999999997               89999999999999999999973   356789999998643


Q ss_pred             C--------CCCHH---------HHHHHH----H-----hhcCCCCCCCccEEEeecCccc------CCCCCccchHHHH
Q psy4975          67 S--------SVTAE---------EVKQFV----E-----DQVNPSKRLSGGVFLCSFDFIP------RTMSGKVKRKDLN  114 (126)
Q Consensus        67 ~--------~~~~~---------~~~~~l----~-----~~l~~~~~p~~~~~~~~~~~lp------~t~~GKv~r~~l~  114 (126)
                      .        ..+..         ++++.+    +     +.|+.|++|++ +.+  ++..+      +|++||++|+.++
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-~~~--~~~~~~~~~~~lT~~~Ki~R~~i~  636 (651)
T PLN02736        560 VLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKA-VTL--VPEPFTVENGLLTPTFKVKRPQAK  636 (651)
T ss_pred             HHHHHHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeE-EEE--eCCCCcCCCCcCChhhhhhHHHHH
Confidence            1        11111         122221    1     25999999997 888  56554      8999999999999


Q ss_pred             HHHhccccCcC
Q psy4975         115 ETKVMRHDDVT  125 (126)
Q Consensus       115 ~~~~~~~~~~~  125 (126)
                      +.|...++..|
T Consensus       637 ~~~~~~i~~~y  647 (651)
T PLN02736        637 AYFAKAISDMY  647 (651)
T ss_pred             HHHHHHHHHHH
Confidence            99988776654

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=99.85  E-value=1.3e-20  Score=142.25  Aligned_cols=109  Identities=23%  Similarity=0.271  Sum_probs=89.1

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcce------EEEEeeecCCCCCeeEEEEE
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVED------VAVIGIPHDVFGELPAAVVV   62 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~------~~~~~~~~~~~~~~~~~~v~   62 (126)
                      +++|||+|||+|++|++|++++.              +|.+||+++.+||+|.+      +++++.++..  ..+.++++
T Consensus       407 ~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~--~~~~~~~~  484 (539)
T PRK06334        407 GGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEK--VRLCLFTT  484 (539)
T ss_pred             CCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCc--eEEEEEEe
Confidence            45789999999999999999987              99999999999999987      6777766432  23334443


Q ss_pred             eCCCCCCCHHHHHHHHHhh-cCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          63 PKPNSSVTAEEVKQFVEDQ-VNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        63 ~~~~~~~~~~~~~~~l~~~-l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      .    ..+.++++++++.. ++.|+.|+. +.+  ++.+|+|++||++|+.|+++....
T Consensus       485 ~----~~~~~~~~~~l~~~~~~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~  536 (539)
T PRK06334        485 F----PTSISEVNDILKNSKTSSILKISY-HHQ--VESIPMLGTGKPDYCSLNALAKSL  536 (539)
T ss_pred             c----cCChHHHHHHHHhcCCcccccchh-eee--ecccccccCCcccHHHHHHHHHHh
Confidence            2    13567888999886 789999995 888  999999999999999999986553

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.85  E-value=2.5e-20  Score=139.70  Aligned_cols=107  Identities=38%  Similarity=0.630  Sum_probs=99.0

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      +|||+|||+|++|++|++++.              +|.+||..+.+++.|.++++++.++...++.+.+++++..+...+
T Consensus       395 ~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~  474 (516)
T PRK13383        395 DGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVD  474 (516)
T ss_pred             cCceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCC
Confidence            699999999999999999996              899999999999999999999999888888999999988766667


Q ss_pred             HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHH
Q psy4975          71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLN  114 (126)
Q Consensus        71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~  114 (126)
                      ..++++++++.++++++|.. +.+  ++.+|+|++||++|+.|+
T Consensus       475 ~~~l~~~~~~~l~~~~~p~~-i~~--v~~iP~t~~gKi~r~~L~  515 (516)
T PRK13383        475 AAQLRDYLKDRVSRFEQPRD-INI--VSSIPRNPTGKVLRKELP  515 (516)
T ss_pred             HHHHHHHHHHhcccCCCCcE-EEE--eCCCCCCCCCcCcHHHhC
Confidence            78999999999999999995 888  899999999999999874

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.84  E-value=5.5e-20  Score=137.07  Aligned_cols=112  Identities=40%  Similarity=0.680  Sum_probs=103.7

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      +|||+|||+++++++|++++.              ++.+||+.+.++++|.++++++.+++..++.+.+++++.++...+
T Consensus       394 ~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  473 (521)
T PRK06187        394 GGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLD  473 (521)
T ss_pred             CCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCCC
Confidence            569999999999999999886              899999999999999999999999888888999999988777778


Q ss_pred             HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                      ..++++++++.++.++.|.. +.+  ++.+|+|++||++|..|++++..
T Consensus       474 ~~~l~~~l~~~l~~~~~p~~-i~~--v~~~P~t~~gK~~r~~l~~~~~~  519 (521)
T PRK06187        474 AKELRAFLRGRLAKFKLPKR-IAF--VDELPRTSVGKILKRVLREQYAE  519 (521)
T ss_pred             HHHHHHHHHHhccCCCCceE-EEE--ccCCCCCCCCCeeHHHHHHHHhc
Confidence            89999999999999999996 888  89999999999999999999875

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.84  E-value=3.4e-20  Score=149.61  Aligned_cols=114  Identities=19%  Similarity=0.177  Sum_probs=99.8

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      ++|||+|||+|++|++|++++.              +|.+||+.+.+++.+.++++++++++..++.+.+++.   ....
T Consensus      1008 ~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~---~~~~ 1084 (1140)
T PRK06814       1008 ADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTT---ASDA 1084 (1140)
T ss_pred             CCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEc---CCCc
Confidence            5899999999999999999987              9999999999999999999999999888887766653   2345


Q ss_pred             CHHHHHHHHHhh-cCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccC
Q psy4975          70 TAEEVKQFVEDQ-VNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDD  123 (126)
Q Consensus        70 ~~~~~~~~l~~~-l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~  123 (126)
                      +.+++.+++++. ++++++|.. +.+  ++++|+|++||++|++|++++......
T Consensus      1085 ~~~~l~~~~~~~~l~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~~~~ 1136 (1140)
T PRK06814       1085 TRAAFLAHAKAAGASELMVPAE-IIT--IDEIPLLGTGKIDYVAVTKLAEEAAAK 1136 (1140)
T ss_pred             CHHHHHHHHHHcCCCcccCCcE-EEE--ecCcCCCCCCCCcHHHHHHHHHHhhcc
Confidence            678889999875 999999996 888  899999999999999999998876543

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.84  E-value=4.4e-20  Score=136.94  Aligned_cols=111  Identities=33%  Similarity=0.697  Sum_probs=99.5

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      .+|||+|||+++++++|++++.              ++.+||+.+.++++|.++++++..++..+....+++++.  ...
T Consensus       358 ~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~--~~~  435 (483)
T PRK03640        358 QDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKS--GEV  435 (483)
T ss_pred             hcCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeC--CCC
Confidence            3689999999999999999986              899999999999999999999998888777788877754  356


Q ss_pred             CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                      +.++++++++..|+++++|.. +++  ++.+|+|++||++|+.|++++..
T Consensus       436 ~~~~l~~~~~~~l~~~~~p~~-i~~--~~~iP~t~~gK~~r~~l~~~~~~  482 (483)
T PRK03640        436 TEEELRHFCEEKLAKYKVPKR-FYF--VEELPRNASGKLLRHELKQLVEE  482 (483)
T ss_pred             CHHHHHHHHHHhccCCCCCcE-EEE--eCCCCCCCccceeHHHHHHHHhh
Confidence            678899999999999999995 888  89999999999999999998864

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.84  E-value=4.7e-20  Score=139.28  Aligned_cols=111  Identities=32%  Similarity=0.524  Sum_probs=99.6

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      +..+|||+|||+++++++|++++.              +|.+||+++.++++|.++++++.++...++.+.++++... .
T Consensus       431 ~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~-~  509 (557)
T PRK07059        431 MTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKD-P  509 (557)
T ss_pred             cccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCC-C
Confidence            346899999999999999999996              8999999999999999999999999888888888887654 3


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHH
Q psy4975          68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNET  116 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~  116 (126)
                      ....+++..++.+.++++++|.. +.+  ++.+|+|++||++|+.|+++
T Consensus       510 ~~~~~~l~~~~~~~l~~~~~P~~-i~~--v~~~P~t~~GK~~r~~L~~~  555 (557)
T PRK07059        510 ALTEEDVKAFCKERLTNYKRPKF-VEF--RTELPKTNVGKILRRELRDG  555 (557)
T ss_pred             CCCHHHHHHHHHHhcccccCCcE-EEE--eccCCCCcccceeHHHHHhh
Confidence            45678899999999999999995 999  99999999999999999865

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.84  E-value=6.5e-20  Score=137.24  Aligned_cols=113  Identities=29%  Similarity=0.463  Sum_probs=100.8

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC--
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS--   68 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~--   68 (126)
                      +|||+|||+|+++++|++++.              ++.+||+++.++|.|.++++++.+++..++.+.+++++.++..  
T Consensus       381 ~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~  460 (511)
T PRK13391        381 GTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPG  460 (511)
T ss_pred             CCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcc
Confidence            499999999999999999996              8999999999999999999999999888888888888765432  


Q ss_pred             -CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          69 -VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        69 -~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                       ...+++.++++..+++++.|.. +.+  ++++|+|++||++|+.|++.+...
T Consensus       461 ~~~~~~l~~~~~~~l~~~~~P~~-i~~--~~~~P~t~~gKv~r~~l~~~~~~~  510 (511)
T PRK13391        461 PALAAELIAFCRQRLSRQKCPRS-IDF--EDELPRLPTGKLYKRLLRDRYWGN  510 (511)
T ss_pred             cchHHHHHHHHHhhcccCcCCcE-EEE--eecCCCCCccceeHHHHHHHhhcc
Confidence             2347899999999999999995 998  999999999999999999988654

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.84  E-value=1.7e-20  Score=153.62  Aligned_cols=110  Identities=20%  Similarity=0.281  Sum_probs=95.4

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC-
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS-   68 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-   68 (126)
                      ++|||+|||+|+++++|+++|+              +|.+||+++.++|.|.+++++...++..++.+++++++..... 
T Consensus       676 ~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~  755 (1389)
T TIGR03443       676 RDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDE  755 (1389)
T ss_pred             ccceeecCCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCcccc
Confidence            4689999999999999999997              9999999999999999999998888777788999988762210 


Q ss_pred             -------------------------CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHH
Q psy4975          69 -------------------------VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNET  116 (126)
Q Consensus        69 -------------------------~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~  116 (126)
                                               ...+++++++++.|+.|++|.. +++  ++.||+|++||++|++|.+.
T Consensus       756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P~~-~~~--~~~lP~t~~GKidr~~L~~~  825 (1389)
T TIGR03443       756 LEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIPTV-IVP--LKKLPLNPNGKVDKPALPFP  825 (1389)
T ss_pred             ccccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcccCCce-EEE--cccCCCCCCccccHhhcCCC
Confidence                                     1136788999999999999995 888  89999999999999999643

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.84  E-value=8.3e-20  Score=137.49  Aligned_cols=114  Identities=34%  Similarity=0.501  Sum_probs=102.3

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      +|||+|||+|++|++|++++.              +|.+||+.+.++|+|.++++++.+++..++.+.+++++.++...+
T Consensus       415 ~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~  494 (545)
T PRK08162        415 GGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASAT  494 (545)
T ss_pred             CCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCCC
Confidence            689999999999999999996              899999999999999999999999888788899999888776677


Q ss_pred             HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975          71 AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD  122 (126)
Q Consensus        71 ~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~  122 (126)
                      .++++++++..++++++|.. +.+   .++|+|++||++|+.|++.+....+
T Consensus       495 ~~~l~~~~~~~l~~~~~P~~-~~~---~~iP~t~~gK~~r~~l~~~~~~l~~  542 (545)
T PRK08162        495 EEEIIAHCREHLAGFKVPKA-VVF---GELPKTSTGKIQKFVLREQAKSLKA  542 (545)
T ss_pred             HHHHHHHHHHhcccccCCcE-EEe---cccCCCCCcCCcHHHHHHHHhhhhh
Confidence            88999999999999999995 655   5799999999999999998776443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.83  E-value=1.1e-19  Score=146.42  Aligned_cols=111  Identities=23%  Similarity=0.232  Sum_probs=96.9

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCC--cceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPD--VEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~--v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      ++|||+|||+|++|++|++++.              +|.+||+++.++|+  +.++++++++++..++.+.++++..   
T Consensus      1017 ~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~--- 1093 (1146)
T PRK08633       1017 GIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCG--- 1093 (1146)
T ss_pred             CCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecC---
Confidence            4599999999999999999997              99999999999984  6679999999998898888888762   


Q ss_pred             CCCHHHHHHHHHh-hcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          68 SVTAEEVKQFVED-QVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        68 ~~~~~~~~~~l~~-~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      ..+.+++++++.+ .+++++.|.. +++  ++++|+|++||++|++|+++....
T Consensus      1094 ~~~~~~l~~~~~~~~l~~~~~P~~-i~~--~~~iP~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633       1094 AEDVEELKRAIKESGLPNLWKPSR-YFK--VEALPLLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred             ccCHHHHHHHHHhcCCCcccCCcE-EEE--ecCcCCCCCCCCcHHHHHHHHHHh
Confidence            3456788888875 5999999996 888  999999999999999999987653

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=99.83  E-value=1.4e-19  Score=134.70  Aligned_cols=111  Identities=28%  Similarity=0.287  Sum_probs=95.9

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC-
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS-   68 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-   68 (126)
                      +.+||+|||+|++ ++|++++.              +|.+||+.+..+|+|.++++++..+...++.+++++++.++.. 
T Consensus       374 g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  452 (503)
T PRK04813        374 GQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFE  452 (503)
T ss_pred             CceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEecccccc
Confidence            3469999999999 89999986              8999999999999999999999877777788888888765421 


Q ss_pred             ---CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHh
Q psy4975          69 ---VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKV  118 (126)
Q Consensus        69 ---~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~  118 (126)
                         ...+++++++.+.++++++|.. +++  ++.+|+|++||++|++|++.+.
T Consensus       453 ~~~~~~~~l~~~~~~~l~~~~~P~~-i~~--~~~~P~t~~gKv~r~~l~~~~~  502 (503)
T PRK04813        453 REFELTKAIKKELKERLMEYMIPRK-FIY--RDSLPLTPNGKIDRKALIEEVN  502 (503)
T ss_pred             ccchhHHHHHHHHHhhCccccCCeE-EEE--eccCCCCCCCCCcHHHHHHHhc
Confidence               1125689999999999999996 888  8999999999999999998765

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=99.82  E-value=8.2e-20  Score=139.62  Aligned_cols=113  Identities=26%  Similarity=0.377  Sum_probs=92.9

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhc-CCCcce--EEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQ-HPDVED--VAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~-~~~v~~--~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      ++||+|||+|+++ +|+|+|.              +|.+||+++.+ +|.|.+  +++++++++. ++.+.+++++.++.
T Consensus       475 ~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~  552 (612)
T PRK12476        475 GTWLRTGDLGVYL-DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGT  552 (612)
T ss_pred             CCeeeccccceeE-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCc
Confidence            4699999999985 9999997              99999999985 799998  6778887776 77888888887653


Q ss_pred             -CCCHHHHHHHHHhhcC-CCCC-CCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          68 -SVTAEEVKQFVEDQVN-PSKR-LSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        68 -~~~~~~~~~~l~~~l~-~~~~-p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                       ..+.+++.+++++.+. .+++ |+. +.++..+.||+|++||++|++|++++...
T Consensus       553 ~~~~~~~l~~~~~~~l~~~~~~~p~~-v~~v~~~~lP~t~~GKi~r~~L~~~~~~~  607 (612)
T PRK12476        553 SRADPAPAIDAIRAAVSRRHGLAVAD-VRLVPAGAIPRTTSGKLARRACRAQYLDG  607 (612)
T ss_pred             ccccHHHHHHHHHHHHHHhhCCcceE-EEEECCCCcCcCCchHHHHHHHHHHHHcC
Confidence             2466788889999877 4777 564 77844457999999999999999998653

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.82  E-value=2.2e-19  Score=135.70  Aligned_cols=113  Identities=34%  Similarity=0.509  Sum_probs=100.2

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      .+|||+|||+++++++|++++.              +|.+||+.+.++++|.++++++.++...++.+.++++..+ ...
T Consensus       430 ~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~-~~~  508 (560)
T PRK08974        430 KDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKD-PSL  508 (560)
T ss_pred             hcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCC-CCC
Confidence            4689999999999999999986              8999999999999999999999999888877777776543 345


Q ss_pred             CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      ..+++.+++.+.+++++.|.. +.+  ++++|+|++||++|+.|++....+
T Consensus       509 ~~~~l~~~l~~~l~~~~~P~~-~~~--~~~lP~t~~GK~~r~~l~~~~~~~  556 (560)
T PRK08974        509 TEEELITHCRRHLTGYKVPKL-VEF--RDELPKSNVGKILRRELRDEARAK  556 (560)
T ss_pred             CHHHHHHHHHhhcccccCCcE-EEE--hhhCCCCCCCcEeHHHHHHHHHhh
Confidence            678899999999999999996 999  999999999999999999987654

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.82  E-value=1.7e-19  Score=137.06  Aligned_cols=121  Identities=28%  Similarity=0.368  Sum_probs=100.5

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcc--eEEEEeeecCCCCCeeEEEEEeCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVE--DVAVIGIPHDVFGELPAAVVVPKP   65 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~--~~~~~~~~~~~~~~~~~~~v~~~~   65 (126)
                      +..+|||+|||+|++ ++|+++++              +|.+||+++.++|+|.  +|++++++++. +..+.++++..+
T Consensus       435 ~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~-~~~~~~~v~~~~  512 (579)
T PRK09192        435 LAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRI  512 (579)
T ss_pred             ccCCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCC-CeeEEEEEEecC
Confidence            346899999999999 89999997              8999999999999998  89999998875 447777777665


Q ss_pred             CCCCCHHHHHHHHHhhcC-CCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccCcC
Q psy4975          66 NSSVTAEEVKQFVEDQVN-PSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDDVT  125 (126)
Q Consensus        66 ~~~~~~~~~~~~l~~~l~-~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~~~  125 (126)
                      +...+.+++.+++++.+. .++.|.. +.++..+.+|+|++||++|++|++++.....+.+
T Consensus       513 ~~~~~~~~l~~~~~~~l~~~~~~~~~-i~~~~~~~lP~t~~GKv~R~~l~~~~~~~~~~~~  572 (579)
T PRK09192        513 SDEERRGQLIHALAALVRSEFGVEAA-VELVPPHSLPRTSSGKLSRAKAKKRYLSGAFASL  572 (579)
T ss_pred             CChHHHHHHHHHHHHHHHHHhCCCce-EEEeCCCCcCCCCCcchhHHHHHHHHHcCCCCcc
Confidence            555566889999999874 6888885 7774446999999999999999999887655443

>PRK12316 peptide synthase; Provisional

Probab=99.81  E-value=1.1e-19  Score=160.71  Aligned_cols=110  Identities=23%  Similarity=0.326  Sum_probs=100.4

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      +++||+|||+|+++++|+|+++              +|.+||+++.++|+|.++++++..+. .++.+++++++.++...
T Consensus      2379 ~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~-~~~~l~a~v~~~~~~~~ 2457 (5163)
T PRK12316       2379 GERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGA-SGKQLVAYVVPDDAAED 2457 (5163)
T ss_pred             CCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecC-CCeEEEEEEEecCCCcc
Confidence            4679999999999999999997              99999999999999999999988665 67889999998877777


Q ss_pred             CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHH
Q psy4975          70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETK  117 (126)
Q Consensus        70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~  117 (126)
                      ..+++++++.+.|+.||+|.. +++  ++.||+|++||++|++|.+..
T Consensus      2458 ~~~~l~~~l~~~Lp~~~vP~~-~~~--l~~lP~t~~GKidR~~L~~~~ 2502 (5163)
T PRK12316       2458 LLAELRAWLAARLPAYMVPAH-WVV--LERLPLNPNGKLDRKALPKPD 2502 (5163)
T ss_pred             CHHHHHHHHHhhCchhcCcce-Eee--ecccCCCCCCccCHhhcCCCc
Confidence            889999999999999999996 888  899999999999999997654

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.81  E-value=2.4e-19  Score=131.47  Aligned_cols=105  Identities=25%  Similarity=0.546  Sum_probs=94.5

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      .+|||+|||+++++++|++++.              ++.+||..+.+++.|.++++++..+...+..+.+++++..  ..
T Consensus       318 ~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~--~~  395 (436)
T TIGR01923       318 QQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSES--DI  395 (436)
T ss_pred             cCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECC--CC
Confidence            4699999999999999999997              8999999999999999999999988777778888888764  35


Q ss_pred             CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHH
Q psy4975          70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDL  113 (126)
Q Consensus        70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l  113 (126)
                      +..++.+++++.++++++|.. +.+  ++.+|+|++||++|++|
T Consensus       396 ~~~~l~~~l~~~l~~~~~p~~-i~~--~~~iP~t~~GK~~r~~L  436 (436)
T TIGR01923       396 SQAKLIAYLTEKLAKYKVPIA-FEK--LDELPYNASGKILRNQL  436 (436)
T ss_pred             CHHHHHHHHHHhhhCCCCCeE-EEE--ecCCCCCCCCceecccC
Confidence            678899999999999999996 888  89999999999999865

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK12316 peptide synthase; Provisional

Probab=99.81  E-value=1.7e-19  Score=159.56  Aligned_cols=109  Identities=24%  Similarity=0.284  Sum_probs=98.4

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      +++|||+|||+|+++++|+|+++              +|.+||+++.++|+|.+|+|++.+    ++.+++++++.++..
T Consensus       883 ~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv~~~~~~  958 (5163)
T PRK12316        883 AGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESEGG  958 (5163)
T ss_pred             CCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC----CCeEEEEEEccCCCC
Confidence            45679999999999999999997              999999999999999999999886    567999999877666


Q ss_pred             CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHh
Q psy4975          69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKV  118 (126)
Q Consensus        69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~  118 (126)
                      ...+.+++++++.|++||+|+. +++  ++.+|+|++||++|++|.+...
T Consensus       959 ~~~~~l~~~l~~~Lp~y~vP~~-i~~--v~~lP~t~~GKidr~~L~~~~~ 1005 (5163)
T PRK12316        959 DWREALKAHLAASLPEYMVPAQ-WLA--LERLPLTPNGKLDRKALPAPEA 1005 (5163)
T ss_pred             CCHHHHHHHHHhhCCCccCCCe-EEE--HhhCCCCCCCChhHHhhcCccc
Confidence            6778999999999999999996 999  9999999999999999987543

>PRK12467 peptide synthase; Provisional

Probab=99.81  E-value=9e-20  Score=159.26  Aligned_cols=112  Identities=24%  Similarity=0.296  Sum_probs=99.1

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      +++||+|||+|+++++|+++++              +|.+||+++.++|+|.+|++++.. ...++.+++++++......
T Consensus      3469 g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~-~~~~~~lva~v~~~~~~~~ 3547 (3956)
T PRK12467       3469 GGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARD-GAGGKQLVAYVVPADPQGD 3547 (3956)
T ss_pred             CceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEEec-CCCCcEEEEEEeCCCCCcc
Confidence            4578999999999999999997              999999999999999999998774 4457789999988766556


Q ss_pred             CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                      ..+.+++++++.|+.||+|.. +++  ++.||+|++||++|++|.+....
T Consensus      3548 ~~~~l~~~l~~~Lp~y~vP~~-~~~--l~~lP~t~~GKidR~~L~~~~~~ 3594 (3956)
T PRK12467       3548 WRETLRDHLAASLPDYMVPAQ-LLV--LAAMPLGPNGKVDRKALPDPDAK 3594 (3956)
T ss_pred             cHHHHHHHHhccCChhhCCCe-eee--eccCCCCCCCccchhhcCCCCcc
Confidence            778999999999999999996 888  89999999999999999876543

>PLN02479 acetate-CoA ligase

Probab=99.81  E-value=4.3e-19  Score=134.52  Aligned_cols=111  Identities=31%  Similarity=0.559  Sum_probs=97.0

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC--
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS--   68 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~--   68 (126)
                      +|||+|||+|+++++|++++.              +|.+||+++..+|.|.++++++.++...++.+.+++++..+..  
T Consensus       429 ~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  508 (567)
T PLN02479        429 NGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKS  508 (567)
T ss_pred             CCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCccccc
Confidence            689999999999999999997              8999999999999999999999988887888899988775532  


Q ss_pred             ---CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          69 ---VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        69 ---~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                         ...+++.++++.+|++++.|+. +.+   +.+|+|++||++|+.|++.+..
T Consensus       509 ~~~~~~~~l~~~~~~~l~~~~~P~~-~~~---~~iP~t~~gKv~r~~L~~~~~~  558 (567)
T PLN02479        509 DEAALAEDIMKFCRERLPAYWVPKS-VVF---GPLPKTATGKIQKHVLRAKAKE  558 (567)
T ss_pred             chhhhHHHHHHHHHhhcccccCCce-EEe---ccCCCCCccCeeHHHHHHHHHh
Confidence               2346889999999999999994 655   5699999999999999887654

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=99.80  E-value=5.1e-19  Score=144.09  Aligned_cols=110  Identities=20%  Similarity=0.289  Sum_probs=94.1

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeee----cCCCC--CeeEEEEEe
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIP----HDVFG--ELPAAVVVP   63 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~----~~~~~--~~~~~~v~~   63 (126)
                      +++||+|||+|+++++|+++++              ++.+||+++.++|+|.+++++...    +...+  ..+++++++
T Consensus       835 ~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~  914 (1296)
T PRK10252        835 GERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVS  914 (1296)
T ss_pred             CCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEc
Confidence            4569999999999999999997              999999999999999999877653    11112  468888887


Q ss_pred             CCCCCCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHH
Q psy4975          64 KPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNET  116 (126)
Q Consensus        64 ~~~~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~  116 (126)
                      ..+...+..++++++++.|+.|++|.. ++.  ++.+|+|++||++|++|.+.
T Consensus       915 ~~~~~~~~~~l~~~l~~~Lp~~~~P~~-~~~--~~~lP~t~~GKidr~~L~~~  964 (1296)
T PRK10252        915 QSGLPLDTSALQAQLRERLPPHMVPVV-LLQ--LDQLPLSANGKLDRKALPLP  964 (1296)
T ss_pred             CCCCCCCHHHHHHHHHhhCchhcCCcE-EEE--ecCCCCCCCcChhHHhcCCC
Confidence            766566788999999999999999995 888  89999999999999999763

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=99.80  E-value=5.6e-19  Score=133.07  Aligned_cols=107  Identities=32%  Similarity=0.553  Sum_probs=96.8

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC-C
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS-V   69 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~   69 (126)
                      ++||+|||+++++++|++++.              +|.+||+.+.++++|.++++++++++..++.+.+++++.++.. .
T Consensus       420 ~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  499 (541)
T TIGR03205       420 GDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPF  499 (541)
T ss_pred             cCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCcC
Confidence            579999999999999999986              9999999999999999999999998888888888888876533 5


Q ss_pred             CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHH
Q psy4975          70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLN  114 (126)
Q Consensus        70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~  114 (126)
                      +.+++.+++++.|+++++|.. +.+  ++++|+|++||++|++|+
T Consensus       500 ~~~~l~~~~~~~l~~~~~P~~-i~~--~~~iP~t~~gK~~r~~l~  541 (541)
T TIGR03205       500 SLDELRAFLAGKLGKHELPVA-VEF--VDELPRTPVGKLSRHELR  541 (541)
T ss_pred             CHHHHHHHHHhhcccccCCcE-EEE--eccCCCCcccceeHhhcC
Confidence            678999999999999999996 999  899999999999999873

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=99.78  E-value=1.9e-18  Score=129.20  Aligned_cols=109  Identities=33%  Similarity=0.501  Sum_probs=95.8

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC--
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS--   68 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~--   68 (126)
                      +|||+|||+++++++|++++.              +|.+||+.+.++++|.++++++..+...+..+.+++++.+...  
T Consensus       383 ~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  462 (508)
T TIGR02262       383 GEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDID  462 (508)
T ss_pred             cCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccc
Confidence            689999999999999999886              8999999999999999999999888777777888887765532  


Q ss_pred             -CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHH
Q psy4975          69 -VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNET  116 (126)
Q Consensus        69 -~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~  116 (126)
                       ...+++.++++..+++++.|.. +..  ++++|+|++||++|+.|+++
T Consensus       463 ~~~~~~i~~~~~~~l~~~~~p~~-i~~--~~~iP~t~~gKi~r~~l~~~  508 (508)
T TIGR02262       463 TALETELKEHVKDRLAPYKYPRW-IVF--VDDLPKTATGKIQRFKLREG  508 (508)
T ss_pred             cccHHHHHHHHHHhcccCCCCce-EEE--ecCCCCCCCCcEehhhccCC
Confidence             3357899999999999999995 888  89999999999999998764

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK12467 peptide synthase; Provisional

Probab=99.78  E-value=8.8e-19  Score=153.21  Aligned_cols=112  Identities=24%  Similarity=0.278  Sum_probs=96.0

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      +++||+|||+|+++++|+++++              +|.+||+++.++|+|.+|++++.. ...++.+++++++......
T Consensus      1952 ~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~eIE~~l~~~p~V~~a~vv~~~-~~~~~~lva~vv~~~~~~~ 2030 (3956)
T PRK12467       1952 GSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVVIAQD-GANGKQLVAYVVPTDPGLV 2030 (3956)
T ss_pred             CccceeccceEEECCCCCEEEecccCceEEeCeEEechHHHHHHHHhCCCcceEEEEEec-CCCCcEEEEEEEecCcccc
Confidence            4579999999999999999997              999999999999999999999886 4456788888887654221


Q ss_pred             --------CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          70 --------TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        70 --------~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                              ...++++++++.|+.||+|.. +++  ++.+|+|++||++|++|.+....
T Consensus      2031 ~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~-~~~--l~~lP~t~~GKidr~~L~~~~~~ 2085 (3956)
T PRK12467       2031 DDDEAQVALRAILKNHLKASLPEYMVPAH-LVF--LARMPLTPNGKLDRKALPAPDAS 2085 (3956)
T ss_pred             cccccccccHHHHHHHHHhhCchhhCchh-hhh--hhcCCCCCCCCcchhhCCCCccc
Confidence                    346899999999999999996 888  89999999999999999875443

>PRK05691 peptide synthase; Validated

Probab=99.77  E-value=5.1e-18  Score=149.24  Aligned_cols=109  Identities=22%  Similarity=0.252  Sum_probs=96.4

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      +.+||+|||+|+++++|+++++              +|.+||+++.++|+|.+|+++...+. .+..++++++...+...
T Consensus      1503 ~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~-~~~~lva~~~~~~~~~~ 1581 (4334)
T PRK05691       1503 GARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGA-AGAQLVGYYTGEAGQEA 1581 (4334)
T ss_pred             CceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCC-CCCEEEEEEEeCCCCCC
Confidence            3569999999999999999997              99999999999999999999865443 45788888887766666


Q ss_pred             CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHH
Q psy4975          70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNET  116 (126)
Q Consensus        70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~  116 (126)
                      ..+++++++++.|+.||+|.. ++.  ++.+|+|++||++|++|.+.
T Consensus      1582 ~~~~l~~~l~~~Lp~y~vP~~-~~~--~~~lP~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691       1582 EAERLKAALAAELPEYMVPAQ-LIR--LDQMPLGPSGKLDRRALPEP 1625 (4334)
T ss_pred             CHHHHHHHHHHhCccccCCcE-EEE--ccccCCCCCCCcChhhcCcc
Confidence            778999999999999999995 888  99999999999999999754

>PRK05691 peptide synthase; Validated

Probab=99.76  E-value=4.7e-18  Score=149.48  Aligned_cols=110  Identities=25%  Similarity=0.331  Sum_probs=93.7

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCC---
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN---   66 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~---   66 (126)
                      +++||+|||+|+++++|+++++              +|.+||+++.++|+|.+|++++... ..++.++++++....   
T Consensus      2566 ~~r~y~TGDl~~~~~dG~l~~~GR~d~qvki~G~rIe~~EIE~~l~~~p~V~~a~V~~~~~-~~~~~lva~vv~~~~~~~ 2644 (4334)
T PRK05691       2566 GGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEIESRLLEHPAVREAVVLALDT-PSGKQLAGYLVSAVAGQD 2644 (4334)
T ss_pred             CCceEeccceEEEcCCCCEEEeecccCeEEeeeEEechHHHHHHHHhCCCcceEEEEEeeC-CCCcEEEEEEEecccccc
Confidence            4579999999999999999997              9999999999999999999998744 456778888876432   


Q ss_pred             ---CCCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHH
Q psy4975          67 ---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETK  117 (126)
Q Consensus        67 ---~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~  117 (126)
                         .....+.+++++++.|+.||+|.. +++  ++.+|+|++||++|++|.+..
T Consensus      2645 ~~~~~~~~~~l~~~l~~~Lp~ymvP~~-~~~--v~~lP~t~~GKidr~~L~~~~ 2695 (4334)
T PRK05691       2645 DEAQAALREALKAHLKQQLPDYMVPAH-LIL--LDSLPLTANGKLDRRALPAPD 2695 (4334)
T ss_pred             cccccccHHHHHHHHHhhCccccCChh-hee--ecccCCCCCCcccHHhhcCcc
Confidence               122347899999999999999996 888  899999999999999997654

>PLN02614 long-chain acyl-CoA synthetase

Probab=99.75  E-value=2.7e-18  Score=132.68  Aligned_cols=117  Identities=26%  Similarity=0.302  Sum_probs=90.7

Q ss_pred             CCceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC--
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS--   67 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~--   67 (126)
                      +|||+|||+|++|++|+|+|+               +|.+||+++.+||.|.+|+|++.+...   .++|++++....  
T Consensus       495 dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~---~l~alvv~~~~~~~  571 (666)
T PLN02614        495 DGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFES---FLVAIANPNQQILE  571 (666)
T ss_pred             cCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcc---eEEEEEeCCHHHHH
Confidence            799999999999999999997               899999999999999999999886432   488888876421  


Q ss_pred             --------CCCH----------HHHHHHH-----HhhcCCCCCCCccEEEe----ecCcccCCCCCccchHHHHHHHhcc
Q psy4975          68 --------SVTA----------EEVKQFV-----EDQVNPSKRLSGGVFLC----SFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        68 --------~~~~----------~~~~~~l-----~~~l~~~~~p~~~~~~~----~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                              ..+.          +.+.+.+     ++.|+.|+++++ ++++    ++++-.+||++|++|..+.+.|...
T Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~-~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~  650 (666)
T PLN02614        572 RWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKA-IHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSV  650 (666)
T ss_pred             HHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeE-EEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHH
Confidence                    0010          1222222     345999999997 6663    2334459999999999999999988


Q ss_pred             ccCcC
Q psy4975         121 HDDVT  125 (126)
Q Consensus       121 ~~~~~  125 (126)
                      ++..|
T Consensus       651 i~~ly  655 (666)
T PLN02614        651 IDEMY  655 (666)
T ss_pred             HHHHH
Confidence            77655

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=99.75  E-value=5.5e-18  Score=130.83  Aligned_cols=117  Identities=26%  Similarity=0.319  Sum_probs=90.7

Q ss_pred             CCceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCC---
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN---   66 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~---   66 (126)
                      +|||+|||+|++|++|+|+|.               +|.+||+++.+||.|.+|+|++.+.   ++.++|++++...   
T Consensus       492 dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~---~~~~~A~vv~~~~~l~  568 (660)
T PLN02861        492 DGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSF---ESFLVAVVVPDRQALE  568 (660)
T ss_pred             ccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCC---cceeEEEEEcCHHHHH
Confidence            799999999999999999997               8999999999999999999998763   3568888887532   


Q ss_pred             -------CCCCH----------HHHHHHHHh-----hcCCCCCCCccEEE----eecCcccCCCCCccchHHHHHHHhcc
Q psy4975          67 -------SSVTA----------EEVKQFVED-----QVNPSKRLSGGVFL----CSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        67 -------~~~~~----------~~~~~~l~~-----~l~~~~~p~~~~~~----~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                             ...+.          ..+.+.+++     .++.+++++. +.+    +++++-.+|+++|++|+.+.+.|...
T Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~-~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~  647 (660)
T PLN02861        569 DWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKA-IHLEPNPFDIERDLITPTFKLKRPQLLKYYKDC  647 (660)
T ss_pred             HHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeE-EEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHH
Confidence                   00111          223344443     3888999986 555    22333389999999999999999988


Q ss_pred             ccCcC
Q psy4975         121 HDDVT  125 (126)
Q Consensus       121 ~~~~~  125 (126)
                      ++..|
T Consensus       648 I~~lY  652 (660)
T PLN02861        648 IDQLY  652 (660)
T ss_pred             HHHHH
Confidence            87655

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.75  E-value=1.3e-17  Score=126.47  Aligned_cols=112  Identities=29%  Similarity=0.407  Sum_probs=87.1

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      +|||+|||+|+++ +|+|++.              +|.+||+++.+++.+. |++++++++ .++.+.++++++++...+
T Consensus       436 ~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~~-~~v~~v~~~-~~~~~~a~v~~~~~~~~~  512 (578)
T PRK05850        436 GPWLRTGDLGFIS-EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGGR-VAAISVPDD-GTEKLVAIIELKKRGDSD  512 (578)
T ss_pred             CCeeeccceeeEE-CCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCCc-EEEEEecCC-CceEEEEEEEeccccCcc
Confidence            5799999999998 8999997              9999999999999854 777788876 677888888887653322


Q ss_pred             ------HHHHHHHHHhhcCCC--CCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          71 ------AEEVKQFVEDQVNPS--KRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        71 ------~~~~~~~l~~~l~~~--~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                            ...+++.+.+.++..  ..|.. +.++..+.+|+|++||++|++|++++...
T Consensus       513 ~~~~~~~~~l~~~v~~~l~~~~~~~~~~-~~~~~~~~iP~t~~GKi~R~~l~~~~~~~  569 (578)
T PRK05850        513 EEAMDRLRTVKREVTSAISKSHGLSVAD-LVLVAPGSIPITTSGKIRRAACVEQYRQD  569 (578)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhCCCceE-EEEeCCCCcCCCCCchHHHHHHHHHHHcC
Confidence                  235666666655432  34664 66744568999999999999999998753

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=99.75  E-value=1.9e-18  Score=132.31  Aligned_cols=118  Identities=17%  Similarity=0.308  Sum_probs=93.3

Q ss_pred             CCCCCceecCceEEE----cCCCcEEEe-----------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEE
Q psy4975           2 LDDDGWLHTGDLAYR----LPDGTHFII-----------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAV   60 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~----~~~g~l~~~-----------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~   60 (126)
                      |+++|||+|||+|++    |++|+++|.                 ++.++|..+..||.|.+|+|++.+++.    +.++
T Consensus       436 ~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~~----~~a~  511 (614)
T PRK08180        436 FDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRDE----IGLL  511 (614)
T ss_pred             cccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCCc----eEEE
Confidence            456899999999999    467899886                 378899999999999999999998765    6688


Q ss_pred             EEeCCCC---------------CCCHHHHHHHHHhhcCCCC--------CCCccEEEeecCcccCC------CCCccchH
Q psy4975          61 VVPKPNS---------------SVTAEEVKQFVEDQVNPSK--------RLSGGVFLCSFDFIPRT------MSGKVKRK  111 (126)
Q Consensus        61 v~~~~~~---------------~~~~~~~~~~l~~~l~~~~--------~p~~~~~~~~~~~lp~t------~~GKv~r~  111 (126)
                      |+++++.               ..+.+++++++...|+.++        .|++ +.+  ++.+|+|      ++||+.|.
T Consensus       512 V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~-~~~--~~~~p~~~~gk~t~~~~~~R~  588 (614)
T PRK08180        512 VFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVAR-ALL--LDEPPSLDAGEITDKGYINQR  588 (614)
T ss_pred             EEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeE-EEE--ecCCCCCccCccCccccccHH
Confidence            8876441               1234568888888777766        8996 888  7777765      56688899


Q ss_pred             HHHHHHhccccCcCC
Q psy4975         112 DLNETKVMRHDDVTR  126 (126)
Q Consensus       112 ~l~~~~~~~~~~~~~  126 (126)
                      ++.+.|+..++..|.
T Consensus       589 ~~~~~y~~~i~~lY~  603 (614)
T PRK08180        589 AVLARRAALVEALYA  603 (614)
T ss_pred             HHHHHhHHHHHHHhC
Confidence            999999998887663

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.73  E-value=2.7e-17  Score=123.96  Aligned_cols=115  Identities=25%  Similarity=0.347  Sum_probs=85.9

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeec--CCCCCeeEEEEEeCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPH--DVFGELPAAVVVPKPN   66 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~--~~~~~~~~~~v~~~~~   66 (126)
                      +.+|||+|||+++++++|++++.              ++.+||+.+.++|+|.+++++++..  ...++...+++.....
T Consensus       411 ~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~  490 (545)
T PRK07768        411 DADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAF  490 (545)
T ss_pred             cCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEeccc
Confidence            45789999999999999999987              8999999999999999977776643  3334444444444322


Q ss_pred             C-CCCHHHHHHHHHhhcCCC--CCCCccEEEeecCcccCCCCCccchHHHHHHHh
Q psy4975          67 S-SVTAEEVKQFVEDQVNPS--KRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKV  118 (126)
Q Consensus        67 ~-~~~~~~~~~~l~~~l~~~--~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~  118 (126)
                      . .....++.+.+++.+.+.  ..|.. +.+++.+.+|+|++||++|+.|++++.
T Consensus       491 ~~~~~~~~l~~~~~~~l~~~~~~~p~~-v~~v~~~~lP~t~~GKi~r~~l~~~~~  544 (545)
T PRK07768        491 EDPAEVRRIRHQVAHEVVAEVGVRPRN-VVVLGPGSIPKTPSGKLRRANAAELVT  544 (545)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhCCCccE-EEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence            1 122345677777766544  57885 777445599999999999999999875

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=99.73  E-value=2.2e-17  Score=128.22  Aligned_cols=116  Identities=23%  Similarity=0.274  Sum_probs=89.2

Q ss_pred             CceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC---
Q psy4975           6 GWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS---   67 (126)
Q Consensus         6 g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~---   67 (126)
                      |||+|||+|++|++|+|+|+               +|.+||+++.+||.|.++++++.+..   ..++|++++....   
T Consensus       535 ~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~a~vv~~~~~~~~  611 (696)
T PLN02387        535 RWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFH---SYCVALVVPSQQALEK  611 (696)
T ss_pred             ceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCc---ceEEEEEEeCHHHHHH
Confidence            49999999999999999997               89999999999999999999987533   3578888876421   


Q ss_pred             -------C-CC----------HHHHHHHH-----HhhcCCCCCCCccEEEee----cCcccCCCCCccchHHHHHHHhcc
Q psy4975          68 -------S-VT----------AEEVKQFV-----EDQVNPSKRLSGGVFLCS----FDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        68 -------~-~~----------~~~~~~~l-----~~~l~~~~~p~~~~~~~~----~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                             . .+          .+.+.+.+     +..|++|++|++ +++++    +++--+||++|+.|+.+.+.|...
T Consensus       612 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~-i~l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~~  690 (696)
T PLN02387        612 WAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAK-IKLLPEPWTPESGLVTAALKLKREQIRKKFKDD  690 (696)
T ss_pred             HHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeE-EEEECCCCCCCCCcCChhhhhhhHHHHHHHHHH
Confidence                   0 01          11222222     335999999997 77732    334458999999999999999998


Q ss_pred             ccCcC
Q psy4975         121 HDDVT  125 (126)
Q Consensus       121 ~~~~~  125 (126)
                      ++..|
T Consensus       691 i~~ly  695 (696)
T PLN02387        691 LKKLY  695 (696)
T ss_pred             HHHHh
Confidence            87766

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.72  E-value=1.8e-17  Score=128.08  Aligned_cols=118  Identities=31%  Similarity=0.452  Sum_probs=90.4

Q ss_pred             CCCceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC-
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS-   67 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~-   67 (126)
                      .+|||+|||+|++|++|+|+|+               +|.+||+.+.++|.|.+|+|++..   .+..++|+++++... 
T Consensus       491 ~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~~~~~A~vv~~~~~~  567 (660)
T PLN02430        491 KDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNEENT  567 (660)
T ss_pred             hccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---CcceEEEEEEcCHHHH
Confidence            4899999999999999999997               899999999999999999999842   345788999886421 


Q ss_pred             ---------CCC------HHHHH----HHH-----HhhcCCCCCCCccEEEe----ecCcccCCCCCccchHHHHHHHhc
Q psy4975          68 ---------SVT------AEEVK----QFV-----EDQVNPSKRLSGGVFLC----SFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        68 ---------~~~------~~~~~----~~l-----~~~l~~~~~p~~~~~~~----~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                               ...      ..+++    +.+     ++.|++|+++++ +++.    ++++-.+|+++|++|+.+.+.|..
T Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~-~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~  646 (660)
T PLN02430        568 NKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKG-VILETKPFDVERDLVTATLKKRRNNLLKYYQV  646 (660)
T ss_pred             HHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeE-EEEECCCCCCcCCcCChhhhhhhHHHHHHHHH
Confidence                     001      11222    222     234999999996 6662    344556999999999999999998


Q ss_pred             cccCcC
Q psy4975         120 RHDDVT  125 (126)
Q Consensus       120 ~~~~~~  125 (126)
                      .++..|
T Consensus       647 ~i~~ly  652 (660)
T PLN02430        647 EIDEMY  652 (660)
T ss_pred             HHHHHH
Confidence            877654

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.71  E-value=1.9e-16  Score=115.67  Aligned_cols=96  Identities=23%  Similarity=0.255  Sum_probs=83.0

Q ss_pred             CceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC-
Q psy4975           6 GWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT-   70 (126)
Q Consensus         6 g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-   70 (126)
                      .|++|||+++++++|+|+|.              +|.+||+++.++|+|.+|++.     ..++.+.+++++.++.... 
T Consensus       275 ~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~-----~~g~~~~a~vv~~~~~~~~~  349 (386)
T TIGR02372       275 RRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVR-----LDGRRLKAFIVVAEDADEAE  349 (386)
T ss_pred             ceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEE-----cCCceEEEEEEECCCCChHH
Confidence            47999999999999999997              999999999999999999885     2356788888887553332 


Q ss_pred             -HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccc
Q psy4975          71 -AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK  109 (126)
Q Consensus        71 -~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~  109 (126)
                       .+++.+++.+++++++.|.. +.+  ++.+|+|++||++
T Consensus       350 ~~~~l~~~~~~~L~~~~~P~~-i~~--~~~lP~t~~GKi~  386 (386)
T TIGR02372       350 LEIELRATAARHLPAPARPDR-FRF--GTELPRTGAGKLA  386 (386)
T ss_pred             HHHHHHHHHHHhCCCCCCCcE-EEE--cccCCCCCCCCcC
Confidence             46889999999999999995 999  9999999999985

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=99.69  E-value=9.1e-17  Score=124.80  Aligned_cols=120  Identities=23%  Similarity=0.261  Sum_probs=87.4

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceE--EEEeeecCCCCCeeEEEEEeC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDV--AVIGIPHDVFGELPAAVVVPK   64 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~--~~~~~~~~~~~~~~~~~v~~~   64 (126)
                      |+.+|||+|||+|++|++|+|+|+               +|.+||+++.++|.|.++  +++..++   ...+++++++.
T Consensus       532 f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~---~~~l~a~vv~~  608 (700)
T PTZ00216        532 LDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPA---RSYICALVLTD  608 (700)
T ss_pred             ccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecC---CceEEEEEecC
Confidence            567899999999999999999997               899999999999999973  3433332   24678888775


Q ss_pred             CCC----------CCC------H----HHHHHHHH-----hhcCCCCCCCccEEEee----cCcccCCCCCccchHHHHH
Q psy4975          65 PNS----------SVT------A----EEVKQFVE-----DQVNPSKRLSGGVFLCS----FDFIPRTMSGKVKRKDLNE  115 (126)
Q Consensus        65 ~~~----------~~~------~----~~~~~~l~-----~~l~~~~~p~~~~~~~~----~~~lp~t~~GKv~r~~l~~  115 (126)
                      ...          ...      .    +.+.+.+.     ..+.+|+.++. +++++    +++-.+|+++|++|+.+.+
T Consensus       609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~-~~~~~~~f~~~~g~lT~t~K~~R~~i~~  687 (700)
T PTZ00216        609 EAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRH-VRVLSDEWTPENGVLTAAMKLKRRVIDE  687 (700)
T ss_pred             HHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeE-EEEECCCCCCCCCCCChhhccchHHHHH
Confidence            310          001      1    12222222     24788999996 66632    3455589999999999999


Q ss_pred             HHhccccCcC
Q psy4975         116 TKVMRHDDVT  125 (126)
Q Consensus       116 ~~~~~~~~~~  125 (126)
                      .|...++..|
T Consensus       688 ~y~~~i~~ly  697 (700)
T PTZ00216        688 RYADLIKELF  697 (700)
T ss_pred             HHHHHHHHHh
Confidence            9998887765

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=99.68  E-value=2.2e-16  Score=89.98  Aligned_cols=72  Identities=39%  Similarity=0.653  Sum_probs=62.7

Q ss_pred             HHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCCHHHHHHHHHhhcCCCCCCCccEEEeecCc-ccCCCCCc
Q psy4975          29 ELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDF-IPRTMSGK  107 (126)
Q Consensus        29 ~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~-lp~t~~GK  107 (126)
                      |||+++.++|+|.+|++++.+++.+|+.+++++++      +.++++++++++|++|++|+. +.++.+++ ||+|++||
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~------~~~~i~~~~~~~l~~~~~P~~-~~~v~~~~~lP~t~~GK   73 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL------DEEEIRDHLRDKLPPYMVPRR-IRFVRLDEELPRTPSGK   73 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE------HHHHHHHHHHHHS-GGGS-SE-EEEEEESSSEEBETTSS
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe------eecccccchhhhCCCcceeeE-EEEccccCcCCCCCCCC
Confidence            79999999999999999999999999999999988      448999999999999999963 55544677 99999998

...

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=99.66  E-value=4.8e-16  Score=121.50  Aligned_cols=115  Identities=17%  Similarity=0.172  Sum_probs=86.0

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN   66 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~   66 (126)
                      |+.||||+|||+|++|++|+|+|+               +|.+||+++.++|.|.+|+|++....   ..++|+|++...
T Consensus       566 f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~---~~~~Alvv~d~~  642 (746)
T PTZ00342        566 FTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSM---DGPLAIISVDKY  642 (746)
T ss_pred             cCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCc---cccEEEEECCHH
Confidence            567999999999999999999997               89999999999999999999986322   258888887531


Q ss_pred             ----------------CC-CCH-----------HHHHH----H---H--HhhcCCCCCCCccEEEe----ecCcccCCCC
Q psy4975          67 ----------------SS-VTA-----------EEVKQ----F---V--EDQVNPSKRLSGGVFLC----SFDFIPRTMS  105 (126)
Q Consensus        67 ----------------~~-~~~-----------~~~~~----~---l--~~~l~~~~~p~~~~~~~----~~~~lp~t~~  105 (126)
                                      .. ...           ..+.+    .   +  +..|++|+++++ ++++    +++. -+||+
T Consensus       643 ~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~-~~l~~~~~t~~~-~lTpt  720 (746)
T PTZ00342        643 LLFKCLKDDNMLESTGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIIND-IYLTSKVWDTNN-YLTPT  720 (746)
T ss_pred             HHHHHHHhcCCccccccCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeee-EEEecCCCCCCC-ccChh
Confidence                            00 010           01111    1   2  225999999997 6663    2333 49999


Q ss_pred             CccchHHHHHHHhccc
Q psy4975         106 GKVKRKDLNETKVMRH  121 (126)
Q Consensus       106 GKv~r~~l~~~~~~~~  121 (126)
                      .|+.|..+.+.|...+
T Consensus       721 ~KlkR~~v~~~y~~~i  736 (746)
T PTZ00342        721 FKVKRFYVFKDYAFFI  736 (746)
T ss_pred             hhhhHHHHHHHHHHHH
Confidence            9999999999888443

>PRK12582 acyl-CoA synthetase; Provisional

Probab=99.65  E-value=2.1e-16  Score=121.24  Aligned_cols=117  Identities=19%  Similarity=0.294  Sum_probs=83.7

Q ss_pred             CCCCCceecCceEEE-c---CCCcEEEe---------------ChHHH--HHHHhcCCCcceEEEEeeecCCCCCeeEEE
Q psy4975           2 LDDDGWLHTGDLAYR-L---PDGTHFII---------------SPCEL--ESIFRQHPDVEDVAVIGIPHDVFGELPAAV   60 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~-~---~~g~l~~~---------------~~~~i--E~~l~~~~~v~~~~~~~~~~~~~~~~~~~~   60 (126)
                      |+++|||+|||+|++ |   ++|+++++               +|.+|  |.++.+||.|.+|+|++++++..    .++
T Consensus       448 f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~~----g~l  523 (624)
T PRK12582        448 FDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFI----GLL  523 (624)
T ss_pred             cCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCcE----EEE
Confidence            557899999999998 4   46899886               66677  56788999999999999987763    344


Q ss_pred             EEeCC----------CC----CCCHHHHHHHHHhhc-------CCCC-CCCccEEEeecCcc------cCCCCCccchHH
Q psy4975          61 VVPKP----------NS----SVTAEEVKQFVEDQV-------NPSK-RLSGGVFLCSFDFI------PRTMSGKVKRKD  112 (126)
Q Consensus        61 v~~~~----------~~----~~~~~~~~~~l~~~l-------~~~~-~p~~~~~~~~~~~l------p~t~~GKv~r~~  112 (126)
                      |++..          +.    ..+.+++.++++..+       +.+. +|++ +.+  ++.+      ++|++||+.|+.
T Consensus       524 v~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~g~~t~~~~~~R~~  600 (624)
T PRK12582        524 AWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRIAR-ALL--MTEPPSIDAGEITDKGYINQRA  600 (624)
T ss_pred             EecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHHhhcCCChhheEE-EEE--eCCCCCccCCcCCccccccHHH
Confidence            33321          10    012245555555554       4444 9996 777  4544      477888999999


Q ss_pred             HHHHHhccccCcC
Q psy4975         113 LNETKVMRHDDVT  125 (126)
Q Consensus       113 l~~~~~~~~~~~~  125 (126)
                      +.+.|...+++.|
T Consensus       601 ~~~~y~~~i~~ly  613 (624)
T PRK12582        601 VLERRAALVERLY  613 (624)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999888766

>KOG1256|consensus

Probab=99.59  E-value=3.9e-15  Score=113.38  Aligned_cols=121  Identities=30%  Similarity=0.416  Sum_probs=91.2

Q ss_pred             CCCCCCceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCC
Q psy4975           1 MLDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP   65 (126)
Q Consensus         1 ~~~~~g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~   65 (126)
                      +||+|||+||||+|+++++|.|.|+               .|+.||++..+.+.|.++++++-+...   .++++|++..
T Consensus       522 ~ideDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~---~LvaiVvpd~  598 (691)
T KOG1256|consen  522 AIDEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRS---FLVAIVVPDP  598 (691)
T ss_pred             hhccccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchh---cEEEEEecCh
Confidence            4799999999999999999999998               899999999999999999998765444   6999999865


Q ss_pred             CCCCCH--------------------HHHHHHHHh-----hcCCCCCCCccEEE----eecCcccCCCCCccchHHHHHH
Q psy4975          66 NSSVTA--------------------EEVKQFVED-----QVNPSKRLSGGVFL----CSFDFIPRTMSGKVKRKDLNET  116 (126)
Q Consensus        66 ~~~~~~--------------------~~~~~~l~~-----~l~~~~~p~~~~~~----~~~~~lp~t~~GKv~r~~l~~~  116 (126)
                      ......                    +.+...+.+     .+..+..-+. +.+    .++++--+||+.|+.|..+.+.
T Consensus       599 e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~-v~l~~~~FsienglltPTlK~KR~~l~~~  677 (691)
T KOG1256|consen  599 EVLKSWAAKDGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKK-VHLLPDPFSIENGLLTPTLKIKRPQLLKY  677 (691)
T ss_pred             hhchhhHHHccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEee-EEEecccccccCCccchhhhhhhHHHHHH
Confidence            421110                    111111111     2566666664 555    2355556899999999999999


Q ss_pred             HhccccCcC
Q psy4975         117 KVMRHDDVT  125 (126)
Q Consensus       117 ~~~~~~~~~  125 (126)
                      |...+++.|
T Consensus       678 yk~~Id~mY  686 (691)
T KOG1256|consen  678 YKKQIDELY  686 (691)
T ss_pred             HHHHHHHHH
Confidence            998887665

>KOG1179|consensus

Probab=99.55  E-value=1.8e-14  Score=107.30  Aligned_cols=111  Identities=23%  Similarity=0.272  Sum_probs=102.6

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCC-CCCeeEEEEEeCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDV-FGELPAAVVVPKPNSS   68 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~   68 (126)
                      +|-||.|||+-.+|+.|++||.              +..|+|..+.....++|+.|+|+.-|. .|...+|.+++.+...
T Consensus       486 GD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~  565 (649)
T KOG1179|consen  486 GDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTE  565 (649)
T ss_pred             CcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCccc
Confidence            5779999999999999999998              999999999999999999999998876 5577888888888889


Q ss_pred             CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHH
Q psy4975          69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETK  117 (126)
Q Consensus        69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~  117 (126)
                      .+...+..+++..||+|++|+ ++.+  .+++++|.+-|..+..|.+..
T Consensus       566 ~d~~~l~~~l~~~LP~YA~P~-FlRl--~~~i~~TgTFKl~K~~L~~eg  611 (649)
T KOG1179|consen  566 KDLEKLYQHLRENLPSYARPR-FLRL--QDEIEKTGTFKLQKTELQKEG  611 (649)
T ss_pred             chHHHHHHHHHhhCccccchH-HHHH--HhhhhcccchhhHHHHHHHcc
Confidence            999999999999999999999 5999  999999999999999988754

>KOG1180|consensus

Probab=99.47  E-value=1.1e-13  Score=102.95  Aligned_cols=117  Identities=26%  Similarity=0.419  Sum_probs=92.1

Q ss_pred             CC--ceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           5 DG--WLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         5 ~g--~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      +|  ||.|||+|++.++|.|.|+               +++.+|.++..+|.|.+.++++.+...   .++++|+++...
T Consensus       512 ~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~s---~~VaiVVPn~~~  588 (678)
T KOG1180|consen  512 DGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNKS---KPVAIVVPNQKH  588 (678)
T ss_pred             CCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEecccccc---eeEEEEcCCchH
Confidence            56  9999999999999999998               999999999999999999999776655   799999998642


Q ss_pred             C--------CCH-----------------HHHHHHH-HhhcCCCCCCCccEEEeecCccc----CCCCCccchHHHHHHH
Q psy4975          68 S--------VTA-----------------EEVKQFV-EDQVNPSKRLSGGVFLCSFDFIP----RTMSGKVKRKDLNETK  117 (126)
Q Consensus        68 ~--------~~~-----------------~~~~~~l-~~~l~~~~~p~~~~~~~~~~~lp----~t~~GKv~r~~l~~~~  117 (126)
                      .        ...                 .++.+.- .+.|..+++|.. +++.+.+.-|    .|..-|+.|+.+...|
T Consensus       589 lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~-I~l~~e~WTPenGlvT~A~KLKRk~I~~~~  667 (678)
T KOG1180|consen  589 LTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAK-IVLSPEPWTPENGLVTAALKLKRKEILAAY  667 (678)
T ss_pred             HHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccce-eEecCCCcCCCccccHHHHHhhHHHHHHHH
Confidence            1        111                 1222222 224899999996 8885555555    5678899999999999


Q ss_pred             hccccCcC
Q psy4975         118 VMRHDDVT  125 (126)
Q Consensus       118 ~~~~~~~~  125 (126)
                      ..+++..|
T Consensus       668 k~ei~~~Y  675 (678)
T KOG1180|consen  668 KKEIDRLY  675 (678)
T ss_pred             HHHHHHHh
Confidence            98887765

>KOG1178|consensus

Probab=99.45  E-value=3.1e-13  Score=107.30  Aligned_cols=113  Identities=23%  Similarity=0.304  Sum_probs=99.8

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      .+..|+|||.|+.-.+|.+.+.              .+.+|+..+..+|.|.++++....++..++.+.++++.......
T Consensus       452 ~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~  531 (1032)
T KOG1178|consen  452 KARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKS  531 (1032)
T ss_pred             hhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCc
Confidence            3679999999998889988886              89999999999999999999999998889999999988766433


Q ss_pred             -CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          70 -TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        70 -~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                       ....++.++.+.|+.|++|.. ++.  ++.+|+|++||+|+++|.. +.+.
T Consensus       532 ~~~~~i~~~l~~~La~y~vPs~-~V~--l~~vPl~~~GKvDkkaL~~-~~s~  579 (1032)
T KOG1178|consen  532 VLIRDIRNYLKKELASYMLPSL-VVP--LAKVPLNPNGKVDKKALLE-YNSK  579 (1032)
T ss_pred             hhHHHHHHhhcccccceecceE-EEE--hhhCCcCCCCCcChhhhhh-hhhh
Confidence             357899999999999999995 888  9999999999999999998 4443

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=99.43  E-value=4.3e-13  Score=102.44  Aligned_cols=119  Identities=23%  Similarity=0.336  Sum_probs=86.1

Q ss_pred             CCCCCCceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCC
Q psy4975           1 MLDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP   65 (126)
Q Consensus         1 ~~~~~g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~   65 (126)
                      +|++||||+|||+|.+|++|+|+++               .|+.||+.+.++|.|++.++++ .+..   .+.|++++..
T Consensus       444 af~~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k~---~~~AlIvp~~  519 (613)
T COG1022         444 AFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDKK---FLVALIVPDF  519 (613)
T ss_pred             hccccCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCCc---ceEEEEeCCH
Confidence            4789999999999999999999998               9999999999999999999998 3333   5888888864


Q ss_pred             CCC------------CCH------HHHHHH----HHh---hcCCCCCCCccEEE----eecCcccCCCCCccchHHHHHH
Q psy4975          66 NSS------------VTA------EEVKQF----VED---QVNPSKRLSGGVFL----CSFDFIPRTMSGKVKRKDLNET  116 (126)
Q Consensus        66 ~~~------------~~~------~~~~~~----l~~---~l~~~~~p~~~~~~----~~~~~lp~t~~GKv~r~~l~~~  116 (126)
                      +..            .+.      .++.+.    +..   .+..++.... +++    .+.+.-..|++-|+.|..+.+.
T Consensus       520 ~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~-~~~~~~~~t~~~~~~t~t~klkR~~i~~~  598 (613)
T COG1022         520 DALEKWAESLNKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQIKK-FVLLPKEFTPENGELTPTLKLKRHVILDR  598 (613)
T ss_pred             HHHHHHHHhccccccCCHHHHhhCHHHHHHHHHHHHHHhhcccchhhhhe-eeecccccccccCccccchhhhHHHHHHh
Confidence            310            111      122222    111   2455566654 443    1234455899999999999999


Q ss_pred             HhccccCc
Q psy4975         117 KVMRHDDV  124 (126)
Q Consensus       117 ~~~~~~~~  124 (126)
                      +...++..
T Consensus       599 ~~~~i~~~  606 (613)
T COG1022         599 YKDEIEAV  606 (613)
T ss_pred             hhhHHHHH
Confidence            88776644

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.18  E-value=1.8e-10  Score=84.94  Aligned_cols=102  Identities=24%  Similarity=0.261  Sum_probs=68.1

Q ss_pred             CCceecCceEEEcCC-C-----cEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeC
Q psy4975           5 DGWLHTGDLAYRLPD-G-----THFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK   64 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~-g-----~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~   64 (126)
                      .+||+|||+++++++ |     .+++.              +|.+||.++.++|+|...+.+........+.+.+.++..
T Consensus       288 ~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~  367 (422)
T TIGR02155       288 VIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELK  367 (422)
T ss_pred             eeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEe
Confidence            579999999999775 4     23333              999999999999999855555555544445566666665


Q ss_pred             CCCC-----CC----HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchH
Q psy4975          65 PNSS-----VT----AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRK  111 (126)
Q Consensus        65 ~~~~-----~~----~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~  111 (126)
                      ++..     .+    .+++.+.+++.+..+   . .+.++.+++||+|+ ||+.|.
T Consensus       368 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~-~v~~~~~~~lp~~~-GK~~~~  418 (422)
T TIGR02155       368 PESYTLRLHEQASLLAGEIQHTIKQEVGVS---M-DVHLVEPGSLPRSE-GKARRV  418 (422)
T ss_pred             cCcccccchHHHHHHHHHHHHHHHhccCcE---E-EEEEECCCCccCCC-CCceEE
Confidence            4321     11    244555555555443   2 26665578999988 999863

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=98.53  E-value=9.8e-08  Score=69.46  Aligned_cols=39  Identities=36%  Similarity=0.572  Sum_probs=36.7

Q ss_pred             ceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEE
Q psy4975           7 WLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAV   45 (126)
Q Consensus         7 ~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~   45 (126)
                      ||+|||++++|++|++++.              +|.+||+.+..++.|.+|++
T Consensus       356 ~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       356 LYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV  408 (408)
T ss_pred             EEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence            9999999999999999987              89999999999999998874

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PTZ00297 pantothenate kinase; Provisional

Probab=98.52  E-value=3.6e-07  Score=76.21  Aligned_cols=95  Identities=22%  Similarity=0.189  Sum_probs=67.1

Q ss_pred             ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC-------------------CCHHH--------HHHHH
Q psy4975          26 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS-------------------VTAEE--------VKQFV   78 (126)
Q Consensus        26 ~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------------~~~~~--------~~~~l   78 (126)
                      +|+.||+.+.++|.|.+++|++...+.    ++|+|+++....                   ....+        +.+.+
T Consensus       871 aP~~IE~~l~~sp~I~qi~V~Gd~~k~----lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i  946 (1452)
T PTZ00297        871 IAAELERIFSQSRYVNDIFLYADPSRP----IIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADF  946 (1452)
T ss_pred             cHHHHHHHHhcCCCccEEEEEecCCCc----eEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHHHhHHHHHHHHH
Confidence            999999999999999999999876554    888888763211                   01122        22222


Q ss_pred             ---Hh--hcCCCCCCCccEEEe----ecCcccCCCCCccchHHHHHHHhccccCcC
Q psy4975          79 ---ED--QVNPSKRLSGGVFLC----SFDFIPRTMSGKVKRKDLNETKVMRHDDVT  125 (126)
Q Consensus        79 ---~~--~l~~~~~p~~~~~~~----~~~~lp~t~~GKv~r~~l~~~~~~~~~~~~  125 (126)
                         .+  .+..+++++. +.++    ++++--+||+.|+.|..+.+.|...++..|
T Consensus       947 ~~V~~~n~l~~~ei~k~-~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie~LY 1001 (1452)
T PTZ00297        947 ACIAKENGLHPSNVPEY-VHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFY 1001 (1452)
T ss_pred             HHHHHHhCcCccceeeE-EEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHHHHh
Confidence               11  1566778874 5552    344446999999999999999998877655

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=98.07  E-value=1.1e-05  Score=48.04  Aligned_cols=84  Identities=21%  Similarity=0.277  Sum_probs=49.9

Q ss_pred             ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC---CHHHHHHHHHhhcCCCCCCCccEEEeecCcccC
Q psy4975          26 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV---TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPR  102 (126)
Q Consensus        26 ~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~  102 (126)
                      +|+.||+++.++|++...+-+.+......+.+...+..+++...   ..+++.+.+.+.+.....-+..+.+++..+||+
T Consensus         5 fP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~~~V~lv~~gtLpr   84 (96)
T PF14535_consen    5 FPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVRPEVELVPPGTLPR   84 (96)
T ss_dssp             -HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS-EEEEEE-TT-S--
T ss_pred             CHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCceEEEEEECCCCccC
Confidence            79999999999999997676666665556777777888775432   234444444444322222221377777889999


Q ss_pred             CCCCccch
Q psy4975         103 TMSGKVKR  110 (126)
Q Consensus       103 t~~GKv~r  110 (126)
                      + .||..|
T Consensus        85 ~-~~K~~R   91 (96)
T PF14535_consen   85 S-EGKAKR   91 (96)
T ss_dssp             --SSSS-S
T ss_pred             C-CCcceE
Confidence            8 588776

>KOG3628|consensus

Probab=97.83  E-value=0.00018  Score=58.42  Aligned_cols=110  Identities=15%  Similarity=0.273  Sum_probs=76.5

Q ss_pred             CCCCceecCceEEEc------CCC----cEEEe--------------ChHHHHHHHhc-CCCcceEEEEeeecCCCCCee
Q psy4975           3 DDDGWLHTGDLAYRL------PDG----THFII--------------SPCELESIFRQ-HPDVEDVAVIGIPHDVFGELP   57 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~------~~g----~l~~~--------------~~~~iE~~l~~-~~~v~~~~~~~~~~~~~~~~~   57 (126)
                      ++.+|-+|||+|++.      .+|    -||.+              +|.+||.-+.. |+.|..|+++     .++..+
T Consensus      1216 ~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF-----~~~glv 1290 (1363)
T KOG3628|consen 1216 LGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVF-----QATGLV 1290 (1363)
T ss_pred             ccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeE-----eeCCeE
Confidence            467899999999973      222    23443              89999997765 8999999998     444456


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHh-hcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          58 AAVVVPKPNSSVTAEEVKQFVED-QVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        58 ~~~v~~~~~~~~~~~~~~~~l~~-~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                      +.++....  ......+.-.+-+ .|..+.+--..+.+++...+|+++.|-.+|..+.+.+.+
T Consensus      1291 VvviE~~g--q~~~~~LvPlIv~~vL~eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~ 1351 (1363)
T KOG3628|consen 1291 VVVIECHG--QQELADLVPLIVNVVLEEHYIILDVVAFVDKGVFPRNSRGEKQRAHILDSWLA 1351 (1363)
T ss_pred             EEEEEecC--chhHhhhhHHHHHHHHhhcceEEEEEEEecCCccccCCchhhHHHHHHHHHHh
Confidence            66665543  2333344444333 366666666556677777999999999999997776654

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=96.98  E-value=0.015  Score=43.68  Aligned_cols=102  Identities=22%  Similarity=0.216  Sum_probs=63.2

Q ss_pred             eecCceEEEcCC----CcEEE---------------e----ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeC
Q psy4975           8 LHTGDLAYRLPD----GTHFI---------------I----SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK   64 (126)
Q Consensus         8 ~~TGD~~~~~~~----g~l~~---------------~----~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~   64 (126)
                      |+|||++.+..+    |..+-               .    +|..||..+.+.+.+..-+-+...++...+.+.+-+...
T Consensus       304 YrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~  383 (438)
T COG1541         304 YRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELE  383 (438)
T ss_pred             EEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEec
Confidence            899999998762    22111               0    999999999999999844444444445556677777776


Q ss_pred             CCCC--CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccch
Q psy4975          65 PNSS--VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR  110 (126)
Q Consensus        65 ~~~~--~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r  110 (126)
                      +...  .+..++...+.+.+.....-+..+-++.+..+|+|. ||..|
T Consensus       384 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~v~~g~l~r~~-~K~kr  430 (438)
T COG1541         384 NEAEELEDERRLAKKLIKNIKSELGVRVEVELVEPGELPRTE-GKAKR  430 (438)
T ss_pred             CcccchHHHHHHHHHHHHHHHhhcCCceEEEEEeccceeccc-CceeE
Confidence            5422  222333345555543333333236666688999998 46654

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=96.79  E-value=0.025  Score=42.51  Aligned_cols=84  Identities=8%  Similarity=-0.036  Sum_probs=45.8

Q ss_pred             ChHHHHHHHhcC---CCcceEEEEeeecCCCC-CeeEEEEEeCCCCCCCHHHHHHHHHhh----cCC-------CCCCCc
Q psy4975          26 SPCELESIFRQH---PDVEDVAVIGIPHDVFG-ELPAAVVVPKPNSSVTAEEVKQFVEDQ----VNP-------SKRLSG   90 (126)
Q Consensus        26 ~~~~iE~~l~~~---~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~----l~~-------~~~p~~   90 (126)
                      +|.+||+++.+.   +++...+-+.......+ ..+...+...+....+.+++.+.+.+.    ++.       ..+.- 
T Consensus       341 ~p~~ie~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  419 (445)
T TIGR03335       341 NRVDVERAVFQRENMDSLTGEYEAFLYGEEEGEITLRVSLECEDKDNCSIHDIQENFTGTFLKYKPELIGSYDEGIFQI-  419 (445)
T ss_pred             CHHHHHHHHhccCCCCCCCccEEEEEecCCCCCceEEEEEEecCcccchHHHHHHHHHHHHhhhhhhhhhhhhcceEEE-
Confidence            999999999994   66654443333333222 244444555544333444555444444    222       11112 


Q ss_pred             cEEEeecCcccCCC-CCccch
Q psy4975          91 GVFLCSFDFIPRTM-SGKVKR  110 (126)
Q Consensus        91 ~~~~~~~~~lp~t~-~GKv~r  110 (126)
                      .+-++....+|+++ .||..|
T Consensus       420 ~~~~~~~~~~~~~~~~~k~~r  440 (445)
T TIGR03335       420 LVNFTGPGELELHKIKGRPKR  440 (445)
T ss_pred             EEEEeCCCCccccccCCCcee
Confidence            14445577899983 699876

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>KOG3628|consensus

Probab=93.89  E-value=0.69  Score=38.80  Aligned_cols=108  Identities=16%  Similarity=0.261  Sum_probs=70.9

Q ss_pred             CCceecCceEEEcCCCcEEEe-------------------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEE
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII-------------------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA   59 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~-------------------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~   59 (126)
                      .-+.+||=+|++- +|.+|++                         ..+-++.+.+.-+.|-++.++-      .+....
T Consensus       570 ~~FmRtGLlGFv~-~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~------~E~~~V  642 (1363)
T KOG3628|consen  570 VPFMRTGLLGFVH-NGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE------DEHIVV  642 (1363)
T ss_pred             chhhhhcceeeee-CCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee------cceEEE
Confidence            4467999999996 5666665                         4455666667778888888875      122333


Q ss_pred             EEEeCCC-CCCCHHHHHHHHHhhcCCCCCCCc-cEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          60 VVVPKPN-SSVTAEEVKQFVEDQVNPSKRLSG-GVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        60 ~v~~~~~-~~~~~~~~~~~l~~~l~~~~~p~~-~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                      ++.-++. .+.+.-+++..+-+.+-.++.-.- -+.+++-+.||+|+-|-+.-.++++.|..
T Consensus       643 v~~esP~a~e~~~~q~~~~v~q~l~~iHqv~vyCilivP~~tLPrt~~~Gi~~~~~k~~F~~  704 (1363)
T KOG3628|consen  643 VVLESPDATEENSFQWMSRVFQALDSIHQVGVYCILIVPANTLPRTPLGGIHNNECKQAFLE  704 (1363)
T ss_pred             EEEeCcchhhhhhhhHHHHHHHHHHHHhcccceEEEEeccccCCCccccccccHHHHHHHHc
Confidence            3332222 344445566666665655555442 13336788999999888999999998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	126
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		3e-22
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		5e-21
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		7e-21
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		7e-21
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		7e-21
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		5e-20
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		5e-20
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		6e-20
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		9e-16
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		8e-15
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		5e-13
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		3e-11
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		5e-10
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		1e-08
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		3e-08
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		2e-07
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		4e-07
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		4e-07
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		6e-07
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		1e-06
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		1e-06
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		1e-06
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		1e-06
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		1e-06
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		1e-06
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		1e-06
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		2e-06
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		2e-06
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		2e-06
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		2e-06
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		2e-06
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		7e-06
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		2e-05
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		2e-05
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		2e-05
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		2e-05
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		4e-05
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		7e-05
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		7e-05
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		3e-04
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		5e-04

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 75/133 (56%), Gaps = 16/133 (12%)
Query: 1   MLDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVI 46
           ++D DGWLH+GD+AY   DG  FI+               P ELESI  QHP + D  V 
Sbjct: 446 LIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVA 505
Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           GIP    GELPAAVVV +   ++T +EV  +V  QV  SKRL GGV     D +P+ ++G
Sbjct: 506 GIPDPDAGELPAAVVVLEEGKTMTEQEVMDYVAGQVTASKRLRGGVKFV--DEVPKGLTG 563
Query: 107 KVKRKDLNETKVM 119
           K+  + + E  +M
Sbjct: 564 KIDARKIREILMM 576

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 16/129 (12%)
Query: 1   MLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVI 46
           ++D DGWLH+GD+AY   D   FI+              +P ELESI  QHP++ D  V 
Sbjct: 416 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVA 475
Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           G+P D  GELPAAVVV +   ++T +E+  +V  QV  +K+L GGV     D +P+ ++G
Sbjct: 476 GLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFV--DEVPKGLTG 533
Query: 107 KVKRKDLNE 115
           K+  + + E
Sbjct: 534 KLDARKIRE 542

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 16/129 (12%)
Query: 1   MLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVI 46
           ++D DGWLH+GD+AY   D   FI+              +P ELESI  QHP++ D  V 
Sbjct: 416 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVA 475
Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           G+P D  GELPAAVVV +   ++T +E+  +V  QV  +K+L GGV     D +P+ ++G
Sbjct: 476 GLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFV--DEVPKGLTG 533
Query: 107 KVKRKDLNE 115
           K+  + + E
Sbjct: 534 KLDARKIRE 542

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 16/129 (12%)
Query: 1   MLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVI 46
           ++D DGWLH+GD+AY   D   FI+              +P ELESI  QHP++ D  V 
Sbjct: 411 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVA 470
Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           G+P D  GELPAAVVV +   ++T +E+  +V  QV  +K+L GGV     D +P+ ++G
Sbjct: 471 GLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFV--DEVPKGLTG 528
Query: 107 KVKRKDLNE 115
           K+  + + E
Sbjct: 529 KLDARKIRE 537

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 16/129 (12%)
Query: 1   MLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVI 46
           ++D DGWLH+GD+AY   D   FI+              +P ELESI  QHP++ D  V 
Sbjct: 411 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVA 470
Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           G+P D  GELPAAVVV +   ++T +E+  +V  QV  +K+L GGV     D +P+ ++G
Sbjct: 471 GLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFV--DEVPKGLTG 528
Query: 107 KVKRKDLNE 115
           K+  + + E
Sbjct: 529 KLDARKIRE 537

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 16/129 (12%)
Query: 1   MLDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVI 46
           ++D++GWLHTGD+ Y   +   FI+               P ELES+  QHP + D  V 
Sbjct: 413 LIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVA 472
Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           G+P  V GELP AVVV +   ++T +EV  +V  QV+ +KRL GGV     D +P+ ++G
Sbjct: 473 GVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFV--DEVPKGLTG 530
Query: 107 KVKRKDLNE 115
           K+  + + E
Sbjct: 531 KIDGRAIRE 539

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 16/129 (12%)
Query: 1   MLDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVI 46
           ++D++GWLHTGD+ Y   +   FI+               P ELES+  QHP + D  V 
Sbjct: 413 LIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVA 472
Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           G+P  V GELP AVVV +   ++T +EV  +V  QV+ +KRL GGV     D +P+ ++G
Sbjct: 473 GVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFV--DEVPKGLTG 530
Query: 107 KVKRKDLNE 115
           K+  + + E
Sbjct: 531 KIDGRAIRE 539

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 92.4 bits (228), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 16/129 (12%)
Query: 1   MLDDDGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVI 46
           ++D++GWLHTGD+ Y   +   FI+               P ELES+  QHP + D  V 
Sbjct: 413 LIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVA 472
Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           G+P  V GELP AVVV +   ++T +EV  +V  QV+ +KRL GGV     D +P+ ++G
Sbjct: 473 GVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFV--DEVPKGLTG 530
Query: 107 KVKRKDLNE 115
           K+  + + E
Sbjct: 531 KIDGRAIRE 539

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 68/126 (53%), Gaps = 17/126 (13%)
Query: 2   LDDDGWLHTG--------------DLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIG 47
           +D DGWLHTG              D    L     F ++P ELE++   HPD+ DVAV+ 
Sbjct: 454 IDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVA 513
Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +  +  GE+P A VV   +S ++ ++VKQFV  QV   KR++   F  S   IP+  SGK
Sbjct: 514 MKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTES---IPKAPSGK 570
Query: 108 VKRKDL 113
           + RKDL
Sbjct: 571 ILRKDL 576

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 17/128 (13%)
Query: 2   LDDDGWLHTG--------------DLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIG 47
           +D +GWLHTG              D    L     F ++P ELE++   HP++ D AV+G
Sbjct: 407 IDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVG 466
Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +  +  GE+P A VV    S  T +E+KQ++  QV   KR+    F+   + IP+  SGK
Sbjct: 467 LKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFI---EAIPKAPSGK 523
Query: 108 VKRKDLNE 115
           + RK+L E
Sbjct: 524 ILRKNLKE 531

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 5/118 (4%)
Query: 2   LDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 61
           +D++G+LH  D    +     + I+P ELE++  +H  V DVAVIG P +  GE+P A +
Sbjct: 426 IDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGEVPKAFI 485
Query: 62  VPKPN--SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETK 117
           V KP     V  E++ ++V ++++  KR+    F+   + +PRT SGK+ R+ L E +
Sbjct: 486 VLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFV---EELPRTASGKLLRRLLREKE 540

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 19/125 (15%)
Query: 7   WLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDV 52
           W+ +GD   RLP+G +                +SP E+E +  QH  V + AV+G+ H  
Sbjct: 407 WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGG 466
Query: 53  FGELPAAVVVPK--PNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
             +  A VV+ +    S + AEE+K FV+D++ P K     VF+   D +P+T +GK++R
Sbjct: 467 LVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFV---DDLPKTATGKIQR 523
Query: 111 KDLNE 115
             L E
Sbjct: 524 FKLRE 528

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 19/122 (15%)
Query: 5   DGWLHTGDLAYRLPDGTHFI----------------ISPCELESIFRQHPDVEDVAVIGI 48
           +GW HTGD+     DG  F                 + P E+E   +QHP + D  VIG+
Sbjct: 374 NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGV 433
Query: 49  PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
           P   + E   AV V KP  S+ A+ + +FV   +   K+    VF+   + +P+   G +
Sbjct: 434 PDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFV---EALPKDAKGAI 490
Query: 109 KR 110
            R
Sbjct: 491 DR 492

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 18/126 (14%)
Query: 4   DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
           D+GW  TGD+     +G  +I              + P E+ES+    P V +VAVIG+P
Sbjct: 388 DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLP 447
Query: 50  HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
            + +GE+ AA+VV   N  V+ +++ ++   ++   K     +F    + IPR  +GK+ 
Sbjct: 448 DEKWGEIAAAIVVADQN-EVSEQQIVEYCGTRLARYKLPKKVIFA---EAIPRNPTGKIL 503
Query: 110 RKDLNE 115
           +  L E
Sbjct: 504 KTVLRE 509

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 4   DDGWLHTGDLA--------YRLPDGTHFIIS------PCELESIFRQHPDVEDVAVIGIP 49
           DDG+  TGDL         + L  G   +I+      P E+ES     P V + AVIG+P
Sbjct: 374 DDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVP 433
Query: 50  HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
           H  FGE   AVVV    +++   +V   ++ Q+   K     +F+   D +PR   GKV+
Sbjct: 434 HADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKXPKKVIFV---DDLPRNTXGKVQ 490
Query: 110 RKDLNET 116
           +  L ET
Sbjct: 491 KNVLRET 497

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 20/128 (15%)
Query: 5   DGWLHTGDLAYRLPDG--------------THFIISPCELESIFRQHPDVEDVAVIGIPH 50
           DG+ HTGD+A+   DG              + + + P E+ES   QHP V + A+ G+P 
Sbjct: 451 DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPD 510
Query: 51  DVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
            V G++  A +V   +   S     E++  V++   P K      F+     +P+T+SGK
Sbjct: 511 PVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPE---LPKTISGK 567
Query: 108 VKRKDLNE 115
           ++R ++ +
Sbjct: 568 IRRVEIRD 575

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 22/124 (17%)
Query: 10  TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
           +GD A R  DG ++I              +   E+ES    HP + + AV+GIPH + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 56  LPAAVVV----PKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRK 111
              A V      +P+  + A EV+ +VE ++ P   L+    L   D +P+T SGK+ R+
Sbjct: 558 AIYAYVTLNHGEEPSPELYA-EVRNWVEKEIGP---LATPDVLHWTDSLPKTRSGKIMRR 613
Query: 112 DLNE 115
            L +
Sbjct: 614 ILRK 617

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 19/129 (14%)
Query: 2   LDDDGWLHTGDLAY-----------RLPD----GTHFIISPCELESIFRQHPDVEDVAVI 46
           L  DG+  TGD+A            RL D    G  +I S  +LE+    HP V++ AV+
Sbjct: 408 LTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWI-SSVDLENALMGHPKVKEAAVV 466
Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
            IPH  + E P AVVVP+       E  +  ++      +     VF    + IPRT +G
Sbjct: 467 AIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFA---EEIPRTSAG 523
Query: 107 KVKRKDLNE 115
           K  ++ L E
Sbjct: 524 KFLKRALRE 532

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/130 (33%), Positives = 59/130 (45%), Gaps = 20/130 (15%)
Query: 4   DDGWLHTGDLA--------YRLPDGTHFIIS------PCELESIFRQHPDVEDVAVIGIP 49
           DDG+  TGDL         + L  G   +I+      P E+ES     P V + AVIG+P
Sbjct: 374 DDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVP 433
Query: 50  HDVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           H  FGE   A VV       S + AEE+  FV D++         +F+   D +PR   G
Sbjct: 434 HADFGEGVTAFVVLXREFAPSEILAEELXAFVXDRLAXFXMPXXVIFV---DDLPRNTMG 490
Query: 107 KVKRKDLNET 116
            V+   L ET
Sbjct: 491 AVQXNVLRET 500

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 5   DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
           DGW  T D+A   P+GT  I              I P E+E +    P V +V VIG+  
Sbjct: 378 DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLAD 437
Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
             +G+   A VVP+   +++A+ +  F         +     F+   D +P+    KV R
Sbjct: 438 QRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFI--LDQLPKNALNKVLR 495
Query: 111 KDL 113
           + L
Sbjct: 496 RQL 498

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 5   DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
           DGW  T D+A   P+GT  I              I P E+E +    P V +V VIG+  
Sbjct: 378 DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLAD 437
Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
             +G+   A VVP+   +++A+ +  F         +     F+   D +P+    KV R
Sbjct: 438 QRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFI--LDQLPKNALNKVLR 495
Query: 111 KDL 113
           + L
Sbjct: 496 RQL 498

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 5   DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
           DGW  T D+A   P+GT  I              I P E+E +    P V +V VIG+  
Sbjct: 378 DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLAD 437
Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
             +G+   A VVP+   +++A+ +  F         +     F+   D +P+    KV R
Sbjct: 438 QRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFI--LDQLPKNALNKVLR 495
Query: 111 KDL 113
           + L
Sbjct: 496 RQL 498

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 5   DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
           DGW  T D+A   P+GT  I              I P E+E +    P V +V VIG+  
Sbjct: 378 DGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLAD 437
Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
             +G+   A VVP+   +++A+ +  F         +     F+   D +P+    KV R
Sbjct: 438 QRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFI--LDQLPKNALNKVLR 495
Query: 111 KDL 113
           + L
Sbjct: 496 RQL 498

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 5   DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
           DGW  T D+A   P+GT  I              I P E+E +    P V +V VIG+  
Sbjct: 378 DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLAD 437
Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
             +G+   A VVP+   +++A+ +  F         +     F+   D +P+    KV R
Sbjct: 438 QRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFI--LDQLPKNALNKVLR 495
Query: 111 KDL 113
           + L
Sbjct: 496 RQL 498

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 22/124 (17%)
Query: 10  TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
           +GD A R  DG ++I              +   E+ES    HP + + AV+GIPH + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 56  LPAAVVV----PKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRK 111
              A V      +P+  + A EV+ +V  ++ P   L+    L   D +P+T SGK+ R+
Sbjct: 558 AIYAYVTLNHGEEPSPELYA-EVRNWVRKEIGP---LATPDVLHWTDSLPKTRSGKIMRR 613
Query: 112 DLNE 115
            L +
Sbjct: 614 ILRK 617

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 22/124 (17%)
Query: 10  TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
           +GD A R  DG ++I              +   E+ES    HP + + AV+GIPH + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 56  LPAAVVV----PKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRK 111
              A V      +P+  + A EV+ +V  ++ P   L+    L   D +P+T SGK+ R+
Sbjct: 558 AIYAYVTLNHGEEPSPELYA-EVRNWVRKEIGP---LATPDVLHWTDSLPKTRSGKIMRR 613
Query: 112 DLNE 115
            L +
Sbjct: 614 ILRK 617

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 22/124 (17%)
Query: 10  TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
           +GD A R  DG ++I              +   E+ES    HP + + AV+GIPH + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 56  LPAAVVV----PKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRK 111
              A V      +P+  + A EV+ +V  ++ P   L+    L   D +P+T SGK+ R+
Sbjct: 558 AIYAYVTLNHGEEPSPELYA-EVRNWVRKEIGP---LATPDVLHWTDSLPKTRSGKIMRR 613
Query: 112 DLNE 115
            L +
Sbjct: 614 ILRK 617

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 22/124 (17%)
Query: 10  TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
           +GD A R  DG ++I              +   E+ES    HP + + AV+GIPH + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 56  LPAAVVV----PKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRK 111
              A V      +P+  + A EV+ +V  ++ P   L+    L   D +P+T SGK+ R+
Sbjct: 558 AIYAYVTLNHGEEPSPELYA-EVRNWVRKEIGP---LATPDVLHWTDSLPKTRSGKIMRR 613
Query: 112 DLNE 115
            L +
Sbjct: 614 ILRK 617

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 5   DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
           DGW  T D+A   P+GT  I              I P E+E +    P V +V VIG+  
Sbjct: 378 DGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIGLAD 437
Query: 51  DVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKR 110
             +G+   A VVP+   +++A+ +  F         +     F+   D +P+    KV R
Sbjct: 438 QRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFI--LDQLPKNALNKVLR 495
Query: 111 KDL 113
           + L
Sbjct: 496 RQL 498

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 22/124 (17%)
Query: 10  TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
           +GD A R  DG ++I              +   E+ES    HP + + AV+GIPH + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 56  LPAAVVV----PKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRK 111
              A V      +P+  + A EV+ +V  ++ P   L+    L   D +P+T SGK+ R+
Sbjct: 558 AIYAYVTLNHGEEPSPELYA-EVRNWVAKEIGP---LATPDVLHWTDSLPKTRSGKIMRR 613
Query: 112 DLNE 115
            L +
Sbjct: 614 ILRK 617

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 4   DDGWLHTGDLA--------YRLPDGTHFIIS------PCELESIFRQHPDVEDVAVIGIP 49
           DDG+  TGDL         + L  G   +I+      P E+ES     P V + AVIG+P
Sbjct: 374 DDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVP 433
Query: 50  HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
           H  FGE   AVVV    +++   +V   ++ Q+         +F+   D +PR   G V+
Sbjct: 434 HADFGEGVTAVVVRDXGATIDEAQVLHGLDGQLAXFXMPXXVIFV---DDLPRNTMGAVQ 490
Query: 110 RKDLNET 116
              L ET
Sbjct: 491 XNVLRET 497

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 22/124 (17%)
Query: 10  TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
           +GD A R  DG ++I              +   E+ES    HP + + AV+GIPH + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 56  LPAAVVV----PKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRK 111
              A V      +P+  + A EV+ +V  ++ P   L+    L   D +P+T SG + R+
Sbjct: 558 AIYAYVTLNHGEEPSPELYA-EVRNWVRKEIGP---LATPDVLHWTDSLPKTRSGAIMRR 613
Query: 112 DLNE 115
            L +
Sbjct: 614 ILRK 617

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 3   DDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 62
           D+DG+      A  + + + + I P E+E+   +HP V + AVI  P  V GE+  A VV
Sbjct: 444 DEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVV 503
Query: 63  PKP-----NSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNE 115
                   +     +E++Q V+    P K      F+ +   +P+T++GK++R  L +
Sbjct: 504 LASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLN---LPKTVTGKIQRAKLRD 558

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 3   DDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 62
           D+DG+      A  + + + + I P E+E+   +HP V + AVI  P  V GE+  A VV
Sbjct: 444 DEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVV 503
Query: 63  PKP-----NSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNE 115
                   +     +E++Q V+    P K      F+ +   +P+T++GK++R  L +
Sbjct: 504 LASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLN---LPKTVTGKIQRAKLRD 558

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 4   DDGWLHTGDLAYRLPDG---------THFI------ISPCELESIFRQHPDVEDVAVIGI 48
           +DG+  TGD+A R PDG         T  I      I   E+E+   +HP+V + AV G 
Sbjct: 380 EDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGE 439
Query: 49  PHDVFGE-LPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           P    GE + A +V   P +      +   V  ++ P KR     +L   D +PR   GK
Sbjct: 440 PDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYL---DAVPRNDMGK 496
Query: 108 VKRKDLN 114
           + ++ LN
Sbjct: 497 IMKRALN 503

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 4   DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
           +DG+  TGD+     DG   +              ++  E+E+    HP V D A++ +P
Sbjct: 405 EDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMP 464
Query: 50  HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGV-FLCSFDFIPRTMSGKV 108
               GE     ++P+ + +  A E+K F+ ++   + ++   V F+ SF   P+T  GKV
Sbjct: 465 DQFLGERSCVFIIPR-DEAPKAAELKAFLRERGLAAYKIPDRVEFVESF---PQTGVGKV 520
Query: 109 KRKDLNET 116
            +K L E 
Sbjct: 521 SKKALREA 528

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 17/127 (13%)
Query: 1   MLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVI 46
           + D+D + ++GDL  R PDG   +              I+  E+E +   HP+V   A++
Sbjct: 411 VFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALV 470
Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
            I  + FGE   A +V + N  + A  +++ + +      +L   + L   + +P T  G
Sbjct: 471 AIVDEQFGEKSCAFIVSR-NPELKAVVLRRHLMELGIAQYKLPDQIKL--IESLPLTAVG 527
Query: 107 KVKRKDL 113
           KV +K L
Sbjct: 528 KVDKKQL 534

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 4   DDGWLHTGDLA--------YRLPDGTHFIIS------PCELESIFRQHPDVEDVAVIGIP 49
           DDG+  TGDL         + L  G   +I+      P E+ES     P V + AVIG+P
Sbjct: 374 DDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVP 433
Query: 50  HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
           H  FGE   A VV     + +  +V   ++ Q+         +F+   D +PR   G V+
Sbjct: 434 HADFGEGVTAFVVLXREFAPSEAQVLHGLDGQLAXFXMPXXVIFV---DDLPRNTMGAVQ 490
Query: 110 RKDLNET 116
              L ET
Sbjct: 491 XNVLRET 497

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 4   DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
           +DG+  TGD+     DG   +              ++  E+E+    HP V D A +  P
Sbjct: 405 EDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXP 464
Query: 50  HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGV-FLCSFDFIPRTMSGKV 108
               GE     ++P+ + +  A E+K F+ ++   + ++   V F+ SF   P+T  GKV
Sbjct: 465 DQFLGERSCVFIIPR-DEAPKAAELKAFLRERGLAAYKIPDRVEFVESF---PQTGVGKV 520
Query: 109 KRKDLNE 115
            +K L E
Sbjct: 521 SKKALRE 527

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 19/124 (15%)
Query: 4   DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
           ++G+ +TGD+A    +G   I              I P ++E++ +Q P + D   +G P
Sbjct: 373 ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHP 432
Query: 50  HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
            D +G++P    V +  S ++  ++  ++   +   K           D +P T +GK++
Sbjct: 433 DDTWGQVPKLYFVSE--SDISKAQLIAYLSKHLAKYKVPK---HFEKVDTLPYTSTGKLQ 487
Query: 110 RKDL 113
           R  L
Sbjct: 488 RNKL 491

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 6   GWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHD 51
           G+  TGD A +  DG  +I+              S  E+E+   + P V + AV+G   D
Sbjct: 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDD 562
Query: 52  VFGELPAAVVVPKPNSS---VTAEEVKQFVEDQVNPSKR----LSGGVFLCSFDFIPRTM 104
           + G+  AA VV K  SS    T +E++   +  V   ++     +    +   D +P+T 
Sbjct: 563 LTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTR 622
Query: 105 SGKVKRKDLNETKVMRHDDV 124
           SGK+ R+ L +      D +
Sbjct: 623 SGKIMRRILRKILAGESDQL 642

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	3e-43
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	3e-43
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	2e-42
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	3e-42
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	3e-35
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	5e-32
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	6e-31
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	2e-30
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	4e-30
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	6e-30
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	2e-29
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	3e-28
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	7e-28
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	1e-27
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	3e-25
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	5e-23
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	4e-20
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	7e-18
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	7e-10
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	5e-09
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	9e-09
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	4e-08
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	8e-08
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-07
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	4e-07
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	5e-07
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	4e-06
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-05
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-05

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  147 bits (374), Expect = 3e-43
 Identities = 50/130 (38%), Positives = 75/130 (57%), Gaps = 18/130 (13%)

Query: 1   MLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVI 46
           ++D++GWLHTGD+ Y   +   FI              + P ELES+  QHP + D  V 
Sbjct: 413 LIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVA 472

Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGV-FLCSFDFIPRTMS 105
           G+P  V GELP AVVV +   ++T +EV  +V  QV+ +KRL GGV F+   D +P+ ++
Sbjct: 473 GVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFV---DEVPKGLT 529

Query: 106 GKVKRKDLNE 115
           GK+  + + E
Sbjct: 530 GKIDGRAIRE 539

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  147 bits (373), Expect = 3e-43
 Identities = 52/130 (40%), Positives = 77/130 (59%), Gaps = 18/130 (13%)

Query: 1   MLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVI 46
           ++D DGWLH+GD+AY   D   FI              ++P ELESI  QHP++ D  V 
Sbjct: 411 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVA 470

Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGV-FLCSFDFIPRTMS 105
           G+P D  GELPAAVVV +   ++T +E+  +V  QV  +K+L GGV F+   D +P+ ++
Sbjct: 471 GLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFV---DEVPKGLT 527

Query: 106 GKVKRKDLNE 115
           GK+  + + E
Sbjct: 528 GKLDARKIRE 537

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  147 bits (373), Expect = 2e-42
 Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 17/137 (12%)

Query: 1   MLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVI 46
            +D DGWLHTGD+     D   FI              ++P ELE++   HPD+ DVAV+
Sbjct: 453 TIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVV 512

Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
            +  +  GE+P A VV   +S ++ ++VKQFV  QV   KR++   F    + IP+  SG
Sbjct: 513 AMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFT---ESIPKAPSG 569

Query: 107 KVKRKDLNETKVMRHDD 123
           K+ RKDL          
Sbjct: 570 KILRKDLRAKLANGLGS 586

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  144 bits (366), Expect = 3e-42
 Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 17/129 (13%)

Query: 1   MLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVI 46
            +D +GWLHTGD+ Y   D   FI              ++P ELE++   HP++ D AV+
Sbjct: 406 TIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVV 465

Query: 47  GIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSG 106
           G+  +  GE+P A VV    S  T +E+KQ++  QV   KR+    F+   + IP+  SG
Sbjct: 466 GLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFI---EAIPKAPSG 522

Query: 107 KVKRKDLNE 115
           K+ RK+L E
Sbjct: 523 KILRKNLKE 531

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  125 bits (317), Expect = 3e-35
 Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 19/130 (14%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
                +  TGD+ +   +G                  I+P ELE++  +H  V DVAVIG
Sbjct: 412 EKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIG 471

Query: 48  IPHDVFGELPAAVVVPKPN--SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMS 105
            P +  GE+P A +V KP     V  E++ ++V ++++  KR+    F+   + +PRT S
Sbjct: 472 KPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFV---EELPRTAS 528

Query: 106 GKVKRKDLNE 115
           GK+ R+ L E
Sbjct: 529 GKLLRRLLRE 538

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  116 bits (293), Expect = 5e-32
 Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 17/129 (13%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
             DDG+  TGDL      G   I              + P E+ES     P V + AVIG
Sbjct: 372 FRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIG 431

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           +PH  FGE   AVVV    +++   +V   ++ Q+   K     +F+   D +PR   GK
Sbjct: 432 VPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKVIFV---DDLPRNTMGK 488

Query: 108 VKRKDLNET 116
           V++  L ET
Sbjct: 489 VQKNVLRET 497

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  113 bits (286), Expect = 6e-31
 Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 19/130 (14%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI---------------ISPCELESIFRQHPDVEDVAVI 46
             +DG+  TGD+A R PDG   I               I   E+E+   +HP+V + AV 
Sbjct: 378 FTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVT 437

Query: 47  GIPHDVFGELPAAVVVP-KPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMS 105
           G P    GE   A +VP  P +      +   V  ++ P KR     +L   D +PR   
Sbjct: 438 GEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYL---DAVPRNDM 494

Query: 106 GKVKRKDLNE 115
           GK+ ++ LN 
Sbjct: 495 GKIMKRALNR 504

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  112 bits (282), Expect = 2e-30
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 19/125 (15%)

Query: 5   DGWLHTGDLAYRLPDGTHFI----------------ISPCELESIFRQHPDVEDVAVIGI 48
           +GW HTGD+     DG  F                 + P E+E   +QHP + D  VIG+
Sbjct: 374 NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGV 433

Query: 49  PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
           P   + E   AV V KP  S+ A+ + +FV   +   K+    VF+   + +P+   G +
Sbjct: 434 PDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFV---EALPKDAKGAI 490

Query: 109 KRKDL 113
            R  +
Sbjct: 491 DRAAV 495

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  111 bits (280), Expect = 4e-30
 Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 19/126 (15%)

Query: 4   DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
           ++G+ +TGD+A    +G   I              I P ++E++ +Q P + D   +G P
Sbjct: 373 ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHP 432

Query: 50  HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVK 109
            D +G++P    V +    ++  ++  ++   +   K       +   D +P T +GK++
Sbjct: 433 DDTWGQVPKLYFVSES--DISKAQLIAYLSKHLAKYKVPKHFEKV---DTLPYTSTGKLQ 487

Query: 110 RKDLNE 115
           R  L  
Sbjct: 488 RNKLYR 493

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  110 bits (278), Expect = 6e-30
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 26/129 (20%)

Query: 4   DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
            DGW  T D+A   P+GT  I              I P E+E +    P V +V VIG+ 
Sbjct: 377 QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLA 436

Query: 50  HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLC--SFDFI---PRTM 104
              +G+   A VVP+   +++A+ +  F          L+   F     +  +   P+  
Sbjct: 437 DQRWGQSVTACVVPRLGETLSADALDTFCRSS-----ELAD--FKRPKRYFILDQLPKNA 489

Query: 105 SGKVKRKDL 113
             KV R+ L
Sbjct: 490 LNKVLRRQL 498

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  109 bits (275), Expect = 2e-29
 Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 28/129 (21%)

Query: 4   DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
           D+GW  TGD+     +G  +I              + P E+ES+    P V +VAVIG+P
Sbjct: 388 DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLP 447

Query: 50  HDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLC--SFDFI---PRTM 104
            + +GE+ AA+VV    + V+ +++ ++         RL+   +       F    PR  
Sbjct: 448 DEKWGEIAAAIVVADQ-NEVSEQQIVEYCGT------RLAR--YKLPKKVIFAEAIPRNP 498

Query: 105 SGKVKRKDL 113
           +GK+ +  L
Sbjct: 499 TGKILKTVL 507

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  106 bits (267), Expect = 3e-28
 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 23/131 (17%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
            D+D + ++GDL  R PDG   +              I+  E+E +   HP+V   A++ 
Sbjct: 412 FDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVA 471

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSK---RLSGGVFLCSFDFIPRTM 104
           I  + FGE   A +V +          +  +E  +   K   ++     + S    P T 
Sbjct: 472 IVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELGIAQYKLPDQI---KLIESL---PLTA 525

Query: 105 SGKVKRKDLNE 115
            GKV +K L  
Sbjct: 526 VGKVDKKQLRS 536

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  105 bits (265), Expect = 7e-28
 Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 28/133 (21%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
            D +G+  +GDL    P+G   +              I+  E+E++  +HP V   A++ 
Sbjct: 407 FDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVS 466

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQV-----NPSKRLSGGVFLCSFDFIPR 102
           +  ++ GE   A +V K    + A +V++F+ +Q       P  R+     + S    P 
Sbjct: 467 MEDELMGEKSCAYLVVKE--PLRAVQVRRFLREQGIAEFKLP-DRV---ECVDSL---PL 517

Query: 103 TMSGKVKRKDLNE 115
           T  GKV +K L +
Sbjct: 518 TAVGKVDKKQLRQ 530

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  104 bits (262), Expect = 1e-27
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 27/133 (20%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
             +DG+  TGD+     DG   +              ++  E+E+    HP V D A++ 
Sbjct: 403 FTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVS 462

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQV-----NPSKRLSGGVFLCSFDFIPR 102
           +P    GE     ++P+   +  A E+K F+ ++       P  R+    F+ SF   P+
Sbjct: 463 MPDQFLGERSCVFIIPRDE-APKAAELKAFLRERGLAAYKIP-DRV---EFVESF---PQ 514

Query: 103 TMSGKVKRKDLNE 115
           T  GKV +K L E
Sbjct: 515 TGVGKVSKKALRE 527

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 98.4 bits (246), Expect = 3e-25
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 21/128 (16%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI----------------ISPCELESIFRQHPDVEDVAV 45
           L  DG+  TGD+A    +G  ++                IS  +LE+    HP V++ AV
Sbjct: 408 LTPDGFFRTGDIAVWDEEG--YVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAV 465

Query: 46  IGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMS 105
           + IPH  + E P AVVVP+       E  +  ++      +     VF    + IPRT +
Sbjct: 466 VAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFA---EEIPRTSA 522

Query: 106 GKVKRKDL 113
           GK  ++ L
Sbjct: 523 GKFLKRAL 530

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score = 91.9 bits (229), Expect = 5e-23
 Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 21/126 (16%)

Query: 5   DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
             W+ +GD   RLP+G +                +SP E+E +  QH  V + AV+G+ H
Sbjct: 405 GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDH 464

Query: 51  DVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
                   A VV K     S + AEE+K FV+D++ P K     VF+   D +P+T +GK
Sbjct: 465 GG-LVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFV---DDLPKTATGK 520

Query: 108 VKRKDL 113
           ++R  L
Sbjct: 521 IQRFKL 526

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 83.5 bits (207), Expect = 4e-20
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 22/128 (17%)

Query: 5   DGWLHTGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPH 50
             +   GD   +  DG   F+             I P E+E+   +HP V + AVI  P 
Sbjct: 432 GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPD 491

Query: 51  DVFGELPAAVVVPKP-----NSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMS 105
            V GE+  A VV        +     +E++Q V+    P K      F+     +P+T++
Sbjct: 492 PVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFV---LNLPKTVT 548

Query: 106 GKVKRKDL 113
           GK++R  L
Sbjct: 549 GKIQRAKL 556

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 77.2 bits (191), Expect = 7e-18
 Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 20/126 (15%)

Query: 5   DGWLHTGDLAYRLPDG-THFI-------------ISPCELESIFRQHPDVEDVAVIGIPH 50
           DG+ HTGD+A+   DG   F+             + P E+ES   QHP V + A+ G+P 
Sbjct: 451 DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPD 510

Query: 51  DVFGELPAAVVVPKPN---SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
            V G++  A +V   +   S     E++  V++   P K      F+     +P+T+SGK
Sbjct: 511 PVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFV---PELPKTISGK 567

Query: 108 VKRKDL 113
           ++R ++
Sbjct: 568 IRRVEI 573

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 51.7 bits (125), Expect = 5e-09
 Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 35/126 (27%)

Query: 10  TGDLAYRLPDGT--------H------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
           TGD A  L DG         +        +   E+ESI  +H  + + AV     D   +
Sbjct: 411 TGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHK-DHQEQ 469

Query: 56  --LPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRL------SGGVFLCSFDFIPRTMSGK 107
             L A  V       +  E+++QF       S+ L      S  + L   D +P T +GK
Sbjct: 470 PYLCAYFV---SEKHIPLEQLRQFS------SEELPTYMIPSYFIQL---DKMPLTSNGK 517

Query: 108 VKRKDL 113
           + RK L
Sbjct: 518 IDRKQL 523

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 51.0 bits (123), Expect = 9e-09
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 32/129 (24%)

Query: 5   DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 50
                +GD A R  DG ++I              +   E+ES    HP + + AV+GIPH
Sbjct: 493 KNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPH 552

Query: 51  DVFGELPAAVVVPKPNSSVTAE---EVKQFVEDQVNPSKRLSGGVFLCSFDFI------P 101
            + G+   A V        + E   EV+ +V  ++ P             D +      P
Sbjct: 553 AIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATP---------DVLHWTDSLP 603

Query: 102 RTMSGKVKR 110
           +T SGK+ R
Sbjct: 604 KTRSGKIMR 612

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 35/126 (27%)

Query: 10  TGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
           TGDLA  LPDGT  +              I   E+E   +++P V+D  V+       G+
Sbjct: 842 TGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVV-ADRHESGD 900

Query: 56  --LPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRL------SGGVFLCSFDFIPRTMSGK 107
             + A +V     + ++AE+VK  +       K+L          FL   D +P T +GK
Sbjct: 901 ASINAYLV---NRTQLSAEDVKAHL------KKQLPAYMVPQTFTFL---DELPLTTNGK 948

Query: 108 VKRKDL 113
           V ++ L
Sbjct: 949 VNKRLL 954

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 48.3 bits (116), Expect = 8e-08
 Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 39/131 (29%)

Query: 10  TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
           TGD A +  DG  +I              +S  E+E+   + P V + AV+G   D+ G+
Sbjct: 507 TGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQ 566

Query: 56  LPAAVVVPKPNSSVT----------AEEVKQFVEDQVNPSKRLSGGVFLCSFDFI----- 100
             AA VV K  SS +           + +   V   + P               I     
Sbjct: 567 AVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAP---------KLIILVDD 617

Query: 101 -PRTMSGKVKR 110
            P+T SGK+ R
Sbjct: 618 LPKTRSGKIMR 628

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 39/134 (29%)

Query: 9   HTGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFG 54
           HTGD+     D    +              I   ++     Q P V     +   ++   
Sbjct: 383 HTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAV-PRYNKEH 441

Query: 55  ELP--AAVVVPKPNSSVT-------AEEVKQFVEDQVNPSKRL------SGGVFLCSFDF 99
           ++    A +V K              + +K  V         +      S  ++    D 
Sbjct: 442 KVQNLLAYIVVKDGVKERFDRELELTKAIKASV------KDHMMSYMMPSKFLYR---DS 492

Query: 100 IPRTMSGKVKRKDL 113
           +P T +GK+  K L
Sbjct: 493 LPLTPNGKIDIKTL 506

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 20/127 (15%)

Query: 3   DDDGWLHTGDLAYRLPDGTHFI--------------ISPCELE-SIFRQHPDVE--DVAV 45
               +L TGDL + L +   ++                P ++E S+            A 
Sbjct: 433 RSAIYLRTGDLGF-LHENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAA 491

Query: 46  IGIPHDVFGELPAAVVVPKPNSS-VTAEEVKQFVEDQVNPSKRLS-GGVFLCSFDFIPRT 103
             I  +   +L     V       V  + +   + + V  + +L    + L     +P T
Sbjct: 492 FVIQEEHEYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHT 551

Query: 104 MSGKVKR 110
            SGK++R
Sbjct: 552 TSGKIRR 558

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 46.0 bits (110), Expect = 5e-07
 Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 36/124 (29%)

Query: 10  TGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
           TGD A     G   FI             +    LE  FR+ P + D A++    +   +
Sbjct: 400 TGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQ 459

Query: 56  LPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRL------SGGVFLCSFDFIPRTMSGKVK 109
           L  A           A+   Q +       ++L         V +   + +P T  GK+ 
Sbjct: 460 LLCAWTGK-------ADASPQAL------LRQLPTWQRPHACVRV---EALPLTAHGKLD 503

Query: 110 RKDL 113
           R  L
Sbjct: 504 RAAL 507

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 22/140 (15%), Positives = 35/140 (25%), Gaps = 46/140 (32%)

Query: 10  TGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVI---GIPHDV 52
           TGD+     D +  F+             +   E+  + R     +   V      P   
Sbjct: 408 TGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTS 467

Query: 53  FGELPAAVVVPKP------------NSSVTAEEVKQFVEDQVNPSKRL------SGGVFL 94
              L  + V                N       ++Q         + L         + +
Sbjct: 468 KQFL-VSFVASSGAAVRGELRWINENYKEINNSLRQAC------EQTLPAYMVPDFIIPI 520

Query: 95  CSFDFIP-RTMSGKVKRKDL 113
               FIP R  S K   K L
Sbjct: 521 ---SFIPLRDTSAKTDAKAL 537

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 38/130 (29%)

Query: 10  TGDLAYRLPDGT--------H------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
           TGD  Y + +G                + +   E+E   R    VE   ++ I       
Sbjct: 381 TGDAGY-VENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPI-KKGEKY 438

Query: 56  --LPAAVVVPKPNSSV----TAEEVKQFVEDQVNPSKRL------SGGVFLCSFDFIPRT 103
             L  AVVVP  +S          +K+ +      ++RL         ++      IP T
Sbjct: 439 DYL-LAVVVPGEHSFEKEFKLTSAIKKEL------NERLPNYMIPRKFMYQ---SSIPMT 488

Query: 104 MSGKVKRKDL 113
            +GKV RK L
Sbjct: 489 PNGKVDRKKL 498

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 25/130 (19%), Positives = 42/130 (32%), Gaps = 38/130 (29%)

Query: 10  TGDLAYRLPDGT--------H------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGE 55
           TGD  + + DG                + +   E+E   RQ   V    VI         
Sbjct: 380 TGDAGF-IQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVI-PYQPNGTV 437

Query: 56  --LPAAVVVPKPNSSV----TAEEVKQFVEDQVNPSKRL------SGGVFLCSFDFIPRT 103
             L  A +VP+ +           +K+ +      +  L         ++    D I  T
Sbjct: 438 EYL-IAAIVPEEHEFEKEFQLTSAIKKEL------AASLPAYMIPRKFIYQ---DHIQMT 487

Query: 104 MSGKVKRKDL 113
            +GK+ RK +
Sbjct: 488 ANGKIDRKRI 497

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	99.94
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	99.94
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	99.94
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.94
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	99.94
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	99.94
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	99.93
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	99.93
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.93
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	99.93
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	99.92
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.92
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.92
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	99.92
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.92
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	99.91
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.91
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	99.91
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.91
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	99.91
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.91
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.91
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.91
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.9
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	99.9
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.89
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	99.87
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	99.87
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	99.86
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.84
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.83
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.77
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.75
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.73
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.42
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.31

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=99.94  E-value=4.9e-27  Score=175.55  Aligned_cols=115  Identities=42%  Similarity=0.747  Sum_probs=106.6

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      |+++|||+|||+|+++++|++++.              +|.+||+++.++|+|.+|++++++++..++.++++++..++.
T Consensus       407 ~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~  486 (536)
T 3ni2_A          407 IDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKS  486 (536)
T ss_dssp             BCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC
T ss_pred             ccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCC
Confidence            568999999999999999999997              999999999999999999999999999999999999998888


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                      ..+.+++++++++.|+.|++|+. +++  ++.||+|++||++|++|++++.+
T Consensus       487 ~~~~~~l~~~l~~~l~~~~~p~~-i~~--v~~lP~t~~GKi~R~~L~~~~~~  535 (536)
T 3ni2_A          487 QATEDEIKQYISKQVIFYKRIKR-VFF--IEAIPKAPSGKILRKNLKEKLAG  535 (536)
T ss_dssp             CCCHHHHHHHHHTTSCGGGCCSE-EEE--CSCCCBCTTSCBCHHHHHTC---
T ss_pred             CCCHHHHHHHHHHhccCCccccE-EEE--EecCCCCCCCCeeHHHHHHHhcc
Confidence            88899999999999999999996 999  99999999999999999988753

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=99.94  E-value=6.2e-27  Score=175.18  Aligned_cols=121  Identities=26%  Similarity=0.440  Sum_probs=109.8

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      |..+|||+|||+|++|++|++++.              +|.+||+++.++|+|.+|++++.+++..++.+++++++.+ .
T Consensus       403 f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~  481 (539)
T 1mdb_A          403 FTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-E  481 (539)
T ss_dssp             BCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-S
T ss_pred             ccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-C
Confidence            457899999999999999999997              9999999999999999999999999988889999998873 3


Q ss_pred             CCCHHHHHHHHHhh-cCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccCcCC
Q psy4975          68 SVTAEEVKQFVEDQ-VNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDDVTR  126 (126)
Q Consensus        68 ~~~~~~~~~~l~~~-l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~~~~  126 (126)
                      ..+.+++++++++. |+.|++|+. +++  ++.||+|++||++|++|++++...++..|.
T Consensus       482 ~~~~~~l~~~l~~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~i~~~y~  538 (539)
T 1mdb_A          482 APKAAELKAFLRERGLAAYKIPDR-VEF--VESFPQTGVGKVSKKALREAISEKLLAGFK  538 (539)
T ss_dssp             CCCHHHHHHHHHHTTCCGGGSCSE-EEE--CSSCCBCTTSCBCHHHHHHHHHHHHHTC--
T ss_pred             CCCHHHHHHHHHhCCCCcccCCCE-EEE--eccCCCCCCcCEeHHHHHHHHHHHHhcccc
Confidence            56788999999998 999999996 999  899999999999999999999988877763

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=99.94  E-value=5.9e-27  Score=174.07  Aligned_cols=115  Identities=36%  Similarity=0.473  Sum_probs=108.6

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      |..+|||+|||+|+++++|++++.              +|.+||+++.++|+|.+|++++++++..++.+.+++++.++.
T Consensus       372 f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~  451 (503)
T 4fuq_A          372 FRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGA  451 (503)
T ss_dssp             BCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC
T ss_pred             hCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCC
Confidence            567999999999999999999997              999999999999999999999999999999999999998888


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                      ..+.+++++++++.|+.|++|+. +++  ++.||+|++||++|++|++++..
T Consensus       452 ~~~~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~R~~L~~~~~~  500 (503)
T 4fuq_A          452 TIDEAQVLHGLDGQLAKFKMPKK-VIF--VDDLPRNTMGKVQKNVLRETYKD  500 (503)
T ss_dssp             CCCHHHHHHHHBTTBCGGGCCSE-EEE--ESCCCBCTTSCBCHHHHHHHTTT
T ss_pred             CCCHHHHHHHHHhhcccCCCCCE-EEE--ECCCCCCcccceeHHHHHHHHHH
Confidence            88899999999999999999996 999  89999999999999999998864

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=99.94  E-value=1.7e-26  Score=171.50  Aligned_cols=111  Identities=32%  Similarity=0.594  Sum_probs=104.7

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      +|||+|||+|+++++|++++.              +|.+||+++.++|+|.+|++++.+++..++.+.+++++.++...+
T Consensus       378 ~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~  457 (504)
T 1t5h_X          378 DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLS  457 (504)
T ss_dssp             TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCC
T ss_pred             CCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcC
Confidence            789999999999999999997              999999999999999999999999999999999999998777778


Q ss_pred             HHHHHHHHHh-hcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHh
Q psy4975          71 AEEVKQFVED-QVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKV  118 (126)
Q Consensus        71 ~~~~~~~l~~-~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~  118 (126)
                      .+++++++++ .|+.|++|+. +++  +++||+|++||++|++|++++.
T Consensus       458 ~~~l~~~~~~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~~~  503 (504)
T 1t5h_X          458 ADALDTFCRSSELADFKRPKR-YFI--LDQLPKNALNKVLRRQLVQQVS  503 (504)
T ss_dssp             HHHHHHHHHTSSCCGGGSCSE-EEE--CSCCCBCTTSCBCHHHHHHHHC
T ss_pred             HHHHHHHHhhccCcccccceE-EEE--hhhCCCCCCCCEeHHHHHHHhc
Confidence            8999999998 8999999996 999  8999999999999999999874

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=99.94  E-value=2.6e-26  Score=172.19  Aligned_cols=119  Identities=40%  Similarity=0.726  Sum_probs=109.6

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      |+.+|||+|||+|+++++|+|++.              +|.+||+++.+||+|.+|++++.+++..|+.+.+++++.++.
T Consensus       414 f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~  493 (548)
T 2d1s_A          414 IDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK  493 (548)
T ss_dssp             BCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC
T ss_pred             ccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCC
Confidence            457899999999999999999997              999999999999999999999999998899999999998777


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCC-ccEEEeecCcccCCCCCccchHHHHHHHhccccC
Q psy4975          68 SVTAEEVKQFVEDQVNPSKRLS-GGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDD  123 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~~p~-~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~  123 (126)
                      ..+.+++++++++.|+.|++|+ . +.+  ++.+|+|++||++|++|++++...++.
T Consensus       494 ~~~~~~l~~~~~~~l~~~~~p~~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~i~~  547 (548)
T 2d1s_A          494 NMTEKEVMDYVASQVSNAKRLRGG-VRF--VDEVPKGLTGKIDGRAIREILKKPVAK  547 (548)
T ss_dssp             CCCHHHHHHHHHTTSCGGGSCTTC-EEE--CSSCCBCTTSCBCHHHHHHHHHSCC--
T ss_pred             CCCHHHHHHHHHHhcccccccccc-EEE--ccCCCCCCcchhHHHHHHHHHhhhhhc
Confidence            7788999999999999999999 6 888  899999999999999999999877654

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=99.94  E-value=5.2e-26  Score=169.45  Aligned_cols=115  Identities=30%  Similarity=0.539  Sum_probs=105.7

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      .+|||+|||+|+++++|+|++.              +|.+||+++.++|+|.+|++++.+++..++.+.+++ +.++...
T Consensus       388 ~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~  466 (517)
T 3r44_A          388 DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEV  466 (517)
T ss_dssp             ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTC
T ss_pred             cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCC
Confidence            3799999999999999999997              999999999999999999999999999888888888 5556677


Q ss_pred             CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975          70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD  122 (126)
Q Consensus        70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~  122 (126)
                      +.+++++++++.|+.|++|+. +++  ++.||+|++||++|++|++++....+
T Consensus       467 ~~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~R~~L~~~~~~~~~  516 (517)
T 3r44_A          467 SEQQIVEYCGTRLARYKLPKK-VIF--AEAIPRNPTGKILKTVLREQYSATVP  516 (517)
T ss_dssp             CHHHHHHHHHHHSCGGGSCSE-EEE--CSCCCBCTTCCBCHHHHHHHHGGGCC
T ss_pred             CHHHHHHHHHHhCCCCCCCCE-EEE--ECCCCCCCCcCccHHHHHHHHHhhcc
Confidence            889999999999999999996 999  99999999999999999999987653

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=99.93  E-value=6.2e-26  Score=168.71  Aligned_cols=111  Identities=33%  Similarity=0.549  Sum_probs=91.0

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe---------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN   66 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~---------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~   66 (126)
                      |..+|||+|||+|+++++|++++.               +|.+||+++.++|+|.+|++++.+++..++.+++++++.+.
T Consensus       378 f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~  457 (505)
T 3nyq_A          378 FTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADP  457 (505)
T ss_dssp             BCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESST
T ss_pred             hcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCC
Confidence            567999999999999999999997               99999999999999999999999999999999999998763


Q ss_pred             -CCCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHH
Q psy4975          67 -SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNE  115 (126)
Q Consensus        67 -~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~  115 (126)
                       ...+.+++++++++.|++|++|+. +++  ++.||+|++||++|++|++
T Consensus       458 ~~~~~~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~  504 (505)
T 3nyq_A          458 AAPPALGTLADHVAARLAPHKRPRV-VRY--LDAVPRNDMGKIMKRALNR  504 (505)
T ss_dssp             TSCCCHHHHHHHHHHHTCGGGSCSE-EEE--CSCCCC-------------
T ss_pred             CCCCCHHHHHHHHHhhCCCCcCccE-EEE--ECCCCCCCCcCeeHHhhcc
Confidence             456788999999999999999995 999  9999999999999999986

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=99.93  E-value=4.3e-26  Score=170.89  Aligned_cols=116  Identities=35%  Similarity=0.607  Sum_probs=77.1

Q ss_pred             CCC--ceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCC-
Q psy4975           4 DDG--WLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN-   66 (126)
Q Consensus         4 ~~g--~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~-   66 (126)
                      .+|  ||+|||+|++|++|+|++.              +|.+||+++.++|+|.+|++++.+++..++.+.+++++.++ 
T Consensus       412 ~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~  491 (549)
T 3g7s_A          412 EKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEY  491 (549)
T ss_dssp             TTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTT
T ss_pred             CCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCc
Confidence            556  9999999999999999997              99999999999999999999999999999999999999876 


Q ss_pred             -CCCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975          67 -SSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD  122 (126)
Q Consensus        67 -~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~  122 (126)
                       ...+.+++++++++.|+.|++|+. +.+  ++.||+|++||++|++|++.+..+..
T Consensus       492 ~~~~~~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~R~~L~~~~~~~~~  545 (549)
T 3g7s_A          492 RGKVDEEDIIEWVRERISGYKRVRE-VEF--VEELPRTASGKLLRRLLREKEAEGHH  545 (549)
T ss_dssp             TTSCCHHHHHHHHHTTCC-----CC-CCE--EEECC---------------------
T ss_pred             cCcCCHHHHHHHHHHhccCcccceE-EEE--eccCCCCCCcCEeHHHHHHHhhcccc
Confidence             567789999999999999999996 888  89999999999999999999887654

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=99.93  E-value=2.6e-25  Score=169.82  Aligned_cols=114  Identities=29%  Similarity=0.417  Sum_probs=105.3

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      .+|||+|||+|++|++|+|+|+              +|.+||+++.+||+|.+|+|++.+++..++.++++|++.++...
T Consensus       492 ~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~  571 (652)
T 1pg4_A          492 FKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEP  571 (652)
T ss_dssp             STTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC
T ss_pred             CCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCC
Confidence            4789999999999999999997              99999999999999999999999999889999999999876544


Q ss_pred             C---HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          70 T---AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        70 ~---~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      .   .+++++++++.|++|++|+. +++  ++.||+|++||++|+.|++++.+.
T Consensus       572 ~~~~~~~l~~~l~~~l~~~~~P~~-i~~--v~~lP~T~sGKi~R~~L~~~~~~~  622 (652)
T 1pg4_A          572 SPELYAEVRNWVRKEIGPLATPDV-LHW--TDSLPKTRSGKIMRRILRKIAAGD  622 (652)
T ss_dssp             CHHHHHHHHHHHHHHTCGGGCCSE-EEE--CSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhCCCCcCCeE-EEE--cCCCCCCCCccchHHHHHHHHhCC
Confidence            4   47899999999999999995 999  999999999999999999999875

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=99.93  E-value=1.2e-25  Score=169.80  Aligned_cols=112  Identities=30%  Similarity=0.542  Sum_probs=85.1

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT   70 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (126)
                      +|||+|||+|++|++|+|+|+              +|.+||++|.++|+|.+|++++++++..++.+.+++++.++....
T Consensus       451 ~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~  530 (580)
T 3etc_A          451 DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPS  530 (580)
T ss_dssp             TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC
T ss_pred             CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCC
Confidence            789999999999999999997              999999999999999999999999999999999999998775444


Q ss_pred             ---HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhc
Q psy4975          71 ---AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVM  119 (126)
Q Consensus        71 ---~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~  119 (126)
                         .+++++++++.|++|++|+. +.+  ++.||+|++||++|++|++++++
T Consensus       531 ~~~~~~l~~~l~~~l~~~~~P~~-i~~--v~~lP~t~sGKi~R~~Lr~~~~~  579 (580)
T 3etc_A          531 DSLKNELQDHVKNVTAPYKYPRI-IEF--VPELPKTISGKIRRVEIRDKDQS  579 (580)
T ss_dssp             HHHHHHHHHHHHHHSCGGGCCSE-EEE--ECC--------------------
T ss_pred             HHHHHHHHHHHHhhCCCccCCeE-EEE--eCCCCCCCCcCCcHHHHHhHhhc
Confidence               36899999999999999995 999  89999999999999999998764

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=99.92  E-value=3.9e-26  Score=170.90  Aligned_cols=117  Identities=32%  Similarity=0.457  Sum_probs=68.5

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      |..+|||+|||+|++|++|++++.              +|.+||+++.+||+|.+|++++.+++.+++.+.+++++. +.
T Consensus       408 f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~  486 (541)
T 1v25_A          408 LTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GE  486 (541)
T ss_dssp             BCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC------
T ss_pred             ccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-CC
Confidence            456899999999999999999997              999999999999999999999999999899999998876 33


Q ss_pred             CCCHHHHHHHHHh-hcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975          68 SVTAEEVKQFVED-QVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD  122 (126)
Q Consensus        68 ~~~~~~~~~~l~~-~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~  122 (126)
                      ..+.+++++++++ .|+.|++|+. +++  ++.+|+|++||++|++|++++....+
T Consensus       487 ~~~~~~l~~~~~~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~~~  539 (541)
T 1v25_A          487 KPTPEELNEHLLKAGFAKWQLPDA-YVF--AEEIPRTSAGKFLKRALREQYKNYYG  539 (541)
T ss_dssp             --------------CCCTTTSCSB-C----------------CCTTHHHHSTTSSC
T ss_pred             CCCHHHHHHHHHhccCccccCCcE-EEE--eCCCCCCCccCeeHHHHHHHHHHhhC
Confidence            4556789999999 8999999996 888  89999999999999999999876554

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=99.92  E-value=8.5e-25  Score=167.29  Aligned_cols=114  Identities=32%  Similarity=0.410  Sum_probs=100.4

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC-
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS-   68 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-   68 (126)
                      .+|||+|||+|++|++|+++|+              +|.+||+++.++|+|.+|+|++.+++..++.++++|+++++.. 
T Consensus       501 ~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~  580 (663)
T 1ry2_A          501 YPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSW  580 (663)
T ss_dssp             STTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC-----
T ss_pred             CCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCcc
Confidence            3799999999999999999997              9999999999999999999999999888999999999876643 


Q ss_pred             --C-------CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          69 --V-------TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        69 --~-------~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                        .       ..+++++++++.|++|++|+. +++  ++.||+|++||++|+.|++++.+.
T Consensus       581 ~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~T~sGKi~R~~L~~~~~~~  638 (663)
T 1ry2_A          581 STATDDELQDIKKHLVFTVRKDIGPFAAPKL-IIL--VDDLPKTRSGKIMRRILRKILAGE  638 (663)
T ss_dssp             -------CCSHHHHHHHHHHHHTCTTTSCSE-EEE--CSCCCBCTTSCBCHHHHHHSCC--
T ss_pred             ccccchhHHHHHHHHHHHHHHhCCCCcCCeE-EEE--cCCCCCCCccCchHHHHHHHHcCC
Confidence              1       157899999999999999996 999  999999999999999999988765

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=99.92  E-value=9.9e-25  Score=162.17  Aligned_cols=114  Identities=25%  Similarity=0.258  Sum_probs=102.6

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      +++|||+|||+|++ ++|++++.              +|.+||+.+.++|+|.+|++++++++..++.+.+++++.+...
T Consensus       374 ~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~  452 (512)
T 3fce_A          374 DGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSF  452 (512)
T ss_dssp             TTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCC
T ss_pred             CCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccc
Confidence            56789999999999 69999997              9999999999999999999999999888889999999887654


Q ss_pred             CCH----HHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          69 VTA----EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        69 ~~~----~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      .+.    +++++++++.|+.|++|+. +++  ++.+|+|++||++|++|.+.+...
T Consensus       453 ~~~~~~~~~l~~~l~~~L~~~~~P~~-~~~--~~~lP~t~~GKi~R~~L~~~~~~~  505 (512)
T 3fce_A          453 EKEFKLTSAIKKELNERLPNYMIPRK-FMY--QSSIPMTPNGKVDRKKLLSEVTAL  505 (512)
T ss_dssp             SSHHHHHHHHHHHHHTTSCGGGSCSE-EEE--CSCCCBCTTSSBCHHHHHHHHHC-
T ss_pred             cchhhhHHHHHHHHHhhCchhcCCeE-EEE--ecccCCCCCcChHHHHHHhhhhhc
Confidence            443    5788999999999999995 999  999999999999999999998864

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.92  E-value=8.6e-25  Score=162.04  Aligned_cols=113  Identities=25%  Similarity=0.485  Sum_probs=85.9

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      .+|||+|||+|+++++|++++.              +|.+||+++.++|+|.+|++++.+++..++.+.++++..  ...
T Consensus       373 ~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~  450 (501)
T 3ipl_A          373 ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDI  450 (501)
T ss_dssp             ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCC
T ss_pred             cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCC
Confidence            3799999999999999999997              999999999999999999999999999898888988864  346


Q ss_pred             CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975          70 TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH  121 (126)
Q Consensus        70 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~  121 (126)
                      +.+++++++++.|+.|++|+. +++  ++.||+|++||++|++|++....+.
T Consensus       451 ~~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~R~~l~~~~~~~~  499 (501)
T 3ipl_A          451 SKAQLIAYLSKHLAKYKVPKH-FEK--VDTLPYTSTGKLQRNKLYREGHHHH  499 (501)
T ss_dssp             CHHHHHHHHHHHSCGGGSCSE-EEE--CSSCC--------------------
T ss_pred             CHHHHHHHHHhhCccccCCCE-EEE--ecccCCCCCCCEeHHHHhhcccccc
Confidence            789999999999999999996 999  9999999999999999999776543

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=99.92  E-value=6.7e-25  Score=163.28  Aligned_cols=116  Identities=20%  Similarity=0.143  Sum_probs=98.5

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCC-CCCeeEEEEEeCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDV-FGELPAAVVVPKPNS   67 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~   67 (126)
                      +++|||+|||+|++|++|++++.              +|.+||+++.++|+|.+|++++..++. .++.+++++++.++.
T Consensus       377 ~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~  456 (521)
T 3l8c_A          377 KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGV  456 (521)
T ss_dssp             TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTS
T ss_pred             CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcc
Confidence            56789999999999999999997              999999999999999999999887655 457889999988764


Q ss_pred             CCC-------HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975          68 SVT-------AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH  121 (126)
Q Consensus        68 ~~~-------~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~  121 (126)
                      ...       .+++++++++.|+.|++|+. +++  ++.||+|++||++|++|++.+....
T Consensus       457 ~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~-i~~--v~~lP~t~~GKidr~~L~~~~~~~~  514 (521)
T 3l8c_A          457 KERFDRELELTKAIKASVKDHMMSYMMPSK-FLY--RDSLPLTPNGKIDIKTLINEVNNRE  514 (521)
T ss_dssp             GGGCSSHHHHHHHHHHHSGGGSCGGGSCSE-EEE--CSSCCBCTTSSBCHHHHHHHTC---
T ss_pred             ccccccchhhHHHHHHHHHhhCccccCCeE-EEE--ecccCCCCCcCccHHHHhhhhhcCC
Confidence            321       46899999999999999995 999  9999999999999999999987654

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=99.91  E-value=4.4e-24  Score=162.01  Aligned_cols=114  Identities=28%  Similarity=0.434  Sum_probs=104.2

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      |+.+|||+|||+|+++++|+++++              +|.+||+++.++|+|.+|++++.+++..++.+.++++..+  
T Consensus       407 f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--  484 (617)
T 3rg2_A          407 FDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--  484 (617)
T ss_dssp             BCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--
T ss_pred             cCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--
Confidence            567999999999999999999997              9999999999999999999999999988889999998875  


Q ss_pred             CCCHHHHHHHHHh-hcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          68 SVTAEEVKQFVED-QVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        68 ~~~~~~~~~~l~~-~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      ..+..++++++++ .|+.|++|+. +++  ++.||+|++||++|++|++++...
T Consensus       485 ~~~~~~l~~~l~~~~lp~~~vP~~-~~~--v~~lP~t~~GKidR~~L~~~~~~~  535 (617)
T 3rg2_A          485 PLRAVQVRRFLREQGIAEFKLPDR-VEC--VDSLPLTAVGKVDKKQLRQWLASR  535 (617)
T ss_dssp             CCCHHHHHHHHHTTTCCGGGSCSE-EEE--CSCCCBCTTSSBCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhCCCccccCCcE-EEE--ecccCCCCCCCCcHHHHHHHHhcc
Confidence            4667899999998 6999999996 999  999999999999999999987653

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=99.91  E-value=1.7e-24  Score=162.96  Aligned_cols=111  Identities=26%  Similarity=0.297  Sum_probs=100.8

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      +++|||+|||+|++|++|+|+|.              +|.+||+++.++|+|.+|++++.+++..++.+++++++..  .
T Consensus       404 ~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~--~  481 (563)
T 1amu_A          404 PGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK--H  481 (563)
T ss_dssp             TTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS--C
T ss_pred             CCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC--C
Confidence            35679999999999999999997              9999999999999999999999999888888999998753  4


Q ss_pred             CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHh
Q psy4975          69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKV  118 (126)
Q Consensus        69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~  118 (126)
                      .+.+++++++++.|+.|++|+. +++  ++.||+|++||++|++|++...
T Consensus       482 ~~~~~l~~~l~~~L~~y~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~~~  528 (563)
T 1amu_A          482 IPLEQLRQFSSEELPTYMIPSY-FIQ--LDKMPLTSNGKIDRKQLPEPDL  528 (563)
T ss_dssp             CCHHHHHHHHHHHSCGGGSCSE-EEE--CSSCCBCTTSSBCGGGSCCCCC
T ss_pred             CCHHHHHHHHHhhCchhhCCcE-EEE--ecccCCCCCcChhHHhcCCccc
Confidence            5678999999999999999996 999  9999999999999999987643

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=99.91  E-value=7.6e-26  Score=169.45  Aligned_cols=115  Identities=27%  Similarity=0.469  Sum_probs=22.3

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      |+++|||+|||+|+++++|++++.              +|.+||+++.++|+|.+|++++.+++..|+.+.+++++.+ .
T Consensus       412 f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~  490 (544)
T 3o83_A          412 FDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-P  490 (544)
T ss_dssp             BCTTCCEEEEEEEEECTTSCEEEEEEEC----------------------------------------------------
T ss_pred             CCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-C
Confidence            567999999999999999999997              9999999999999999999999999999999999998765 3


Q ss_pred             CCCHHHHHHHHHh-hcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          68 SVTAEEVKQFVED-QVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        68 ~~~~~~~~~~l~~-~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      ..+...+++++.+ .|+.|++|+. +.+  ++.||+|++||++|++|++++...
T Consensus       491 ~~~~~~l~~~~~~~~l~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~  541 (544)
T 3o83_A          491 ELKAVVLRRHLMELGIAQYKLPDQ-IKL--IESLPLTAVGKVDKKQLRSILNTS  541 (544)
T ss_dssp             ------------------------------------------------------
T ss_pred             CCCHHHHHHHHHhCCCCcccCCcE-EEE--eccCCCCCCCCCcHHHHHHHHhhc
Confidence            4556788899988 7999999996 999  899999999999999999988764

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=99.91  E-value=7.5e-26  Score=169.59  Aligned_cols=118  Identities=43%  Similarity=0.793  Sum_probs=22.3

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      |+.+|||+|||+|+++++|+|++.              +|.+||+++.++|+|.+|++++.+++..++.+.+++++.++.
T Consensus       412 ~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~  491 (550)
T 3rix_A          412 IDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK  491 (550)
T ss_dssp             BCTTSCEEEEEEEEECTTCCEEEC--------------------------------------------------------
T ss_pred             cCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCC
Confidence            468999999999999999999997              999999999999999999999999999999999999988777


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975          68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH  121 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~  121 (126)
                      ..+.+++.+++++.++++++|...+++  ++.||+|++||++|++|++++....
T Consensus       492 ~~~~~~l~~~~~~~l~~~~~~~~~i~~--v~~lP~t~~GKi~r~~L~~~~~~~~  543 (550)
T 3rix_A          492 TMTEKEIVDYVASQVTTAKKLRGGVVF--VDEVPKGLTGKLDARKIREILIKAK  543 (550)
T ss_dssp             ------------------------------------------------------
T ss_pred             CCCHHHHHHHHHHhcccccccCCceEE--EeecCCCCCcceeHHHHHHHHHhhc
Confidence            777889999999999998766534888  8999999999999999999987644

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=99.91  E-value=7.7e-26  Score=168.02  Aligned_cols=116  Identities=30%  Similarity=0.555  Sum_probs=19.9

Q ss_pred             CCceecCceEEEcCCCcEEEe----------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII----------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~----------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      +|||+|||+|+++++|++++.                +|.+||+++.++|+|.+|++++.+++..++.+.+++++.++..
T Consensus       374 ~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~  453 (509)
T 3ivr_A          374 NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGES  453 (509)
T ss_dssp             GGSEEEEEEEEECTTSCEEEEEEC--------------------------------------------------------
T ss_pred             cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCC
Confidence            799999999999999999987                8999999999999999999999999998999999999887777


Q ss_pred             CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccC
Q psy4975          69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDD  123 (126)
Q Consensus        69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~  123 (126)
                      .+.+++++++++.|+.|++|+. +++  ++.||+|++||++|++|++++......
T Consensus       454 ~~~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~t~~GKidr~~Lr~~~~~~~~~  505 (509)
T 3ivr_A          454 IAADALAEFVASLIARYKKPKH-VVF--VEALPKDAKGAIDRAAVKTAHGQEGHH  505 (509)
T ss_dssp             -------------------------------------------------------
T ss_pred             CCHHHHHHHHHhhCcccCCCcE-EEE--ecCCCCCCCCCccHHHHHHHHhhcccc
Confidence            7788999999999999999996 888  899999999999999999998876543

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=99.91  E-value=2.7e-24  Score=161.99  Aligned_cols=113  Identities=27%  Similarity=0.390  Sum_probs=101.3

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC-C
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS-V   69 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~   69 (126)
                      +|||+|||+|++|++|+|++.              +|.+||+++.++|+|.+|++++.+++..++.+.+++++.++.. .
T Consensus       432 ~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~  511 (570)
T 3c5e_A          432 GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSH  511 (570)
T ss_dssp             TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTS
T ss_pred             CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCc
Confidence            699999999999999999997              9999999999999999999999999988899999999876531 1


Q ss_pred             ----CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          70 ----TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        70 ----~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                          ..+++++++++.|+.|++|+. +.+  ++.||+|++||++|++|++.+...
T Consensus       512 ~~~~~~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~R~~L~~~~~~~  563 (570)
T 3c5e_A          512 DPEQLTKELQQHVKSVTAPYKYPRK-IEF--VLNLPKTVTGKIQRAKLRDKEWKM  563 (570)
T ss_dssp             CHHHHHHHHHHHHHHHSCGGGSCSE-EEE--ESCCCBCTTCCBCHHHHHHHHTC-
T ss_pred             chHHHHHHHHHHHHhhCccccCCcE-EEE--eccCCCCCCcCCcHHHHHHHHHhh
Confidence                246889999999999999996 999  899999999999999999988654

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=99.91  E-value=8.2e-24  Score=157.30  Aligned_cols=111  Identities=24%  Similarity=0.248  Sum_probs=100.4

Q ss_pred             CceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCCH
Q psy4975           6 GWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTA   71 (126)
Q Consensus         6 g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   71 (126)
                      +||+|||+|++ ++|++++.              +|.+||+++.++|+|.+|++++.+++..++.+++++++.++.....
T Consensus       376 ~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~  454 (511)
T 3e7w_A          376 WAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKE  454 (511)
T ss_dssp             EEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSH
T ss_pred             EEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccch
Confidence            38999999999 58999997              9999999999999999999999998888899999999987655443


Q ss_pred             ----HHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          72 ----EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        72 ----~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                          +++++++++.|+.|++|+. +++  ++.+|+|++||++|++|++.+...
T Consensus       455 ~~~~~~l~~~l~~~L~~~~~P~~-~~~--v~~lP~t~~GKi~R~~L~~~~~~~  504 (511)
T 3e7w_A          455 FQLTSAIKKELAASLPAYMIPRK-FIY--QDHIQMTANGKIDRKRIGEEVLVR  504 (511)
T ss_dssp             HHHHHHHHHHHHHHSCGGGSCSE-EEE--CSCCCBCTTSCBCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhCchhhCCee-EEE--eccCCCCCCcCccHHHHHhHHhhh
Confidence                6788999999999999996 999  999999999999999999998764

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.91  E-value=1.6e-24  Score=155.32  Aligned_cols=114  Identities=11%  Similarity=0.130  Sum_probs=93.9

Q ss_pred             CCCCceecCceEEEcCCCcEEEe-------------ChHHHHHHHh---cCCCcceEEEE-eeecCCCCCeeEEEEEeCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII-------------SPCELESIFR---QHPDVEDVAVI-GIPHDVFGELPAAVVVPKP   65 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~-------------~~~~iE~~l~---~~~~v~~~~~~-~~~~~~~~~~~~~~v~~~~   65 (126)
                      ..+|||+|||+|++|++|.+++-             +|.+||+.+.   +||.|.+++++ +.+++..|+.++++++...
T Consensus       225 ~~~g~~~TGDlg~~d~~g~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~  304 (358)
T 4gs5_A          225 TNGQTVQTNDLVEIHGNAFQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAM  304 (358)
T ss_dssp             GTTCCEEEEEEEEECSSEEEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCC
T ss_pred             ccCcceecCCccccccCceEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCC
Confidence            46899999999999988844432             9999998774   57999987765 6778888888888887543


Q ss_pred             CCCCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          66 NSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        66 ~~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      . ....+++++++++.|+.|++|+. +++  +++||+|++||++|++|++++...
T Consensus       305 ~-~~~~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~R~~L~~~l~e~  355 (358)
T 4gs5_A          305 P-EALTERLTAEIRSRVSTYENPKH-IYF--AKAFAKTQTDKIDKRATFQKLSDS  355 (358)
T ss_dssp             C-HHHHHHHHHHHHHHSCGGGSCSC-EEE--ESSCCBCTTSCBCHHHHHHHTC--
T ss_pred             C-CcCHHHHHHHHHhhCCCCCCceE-EEE--ECCcCCCCCCChhHHHHHHHhhhh
Confidence            3 34457899999999999999996 999  899999999999999999987654

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=99.90  E-value=2.4e-25  Score=176.03  Aligned_cols=119  Identities=42%  Similarity=0.704  Sum_probs=22.4

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      |+++|||+|||+|+++++|+|+++              +|.+||++|.++|+|.++++++.+++..++.+++++++.++.
T Consensus       454 f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~  533 (979)
T 3tsy_A          454 IDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDS  533 (979)
T ss_dssp             BCTTSCEEEEEEEEECTTSCEEEEEESCC---------------------------------------------------
T ss_pred             ccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCC
Confidence            568999999999999999999997              999999999999999999999999988899999999987776


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccccC
Q psy4975          68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHDD  123 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~~  123 (126)
                      ..+.+++++++++.|+.|++|+. +++  ++.||+|++||++|++|++++......
T Consensus       534 ~~~~~~l~~~l~~~l~~~~~p~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~~~~  586 (979)
T 3tsy_A          534 ELSEDDVKQFVSKQVVFYKRINK-VFF--TESIPKAPSGKILRKDLRAKLANGLGS  586 (979)
T ss_dssp             --------------------------------------------------------
T ss_pred             CCCHHHHHHHHHHhcccccCCeE-EEE--eCCcCcCCCCCeeHHHHHHHHHhhcCC
Confidence            67778999999999999999996 888  899999999999999999998765543

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=99.90  E-value=3.6e-25  Score=166.56  Aligned_cols=112  Identities=27%  Similarity=0.350  Sum_probs=20.9

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCC-C
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN-S   67 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~-~   67 (126)
                      +++|||+|||+|++|++|+|+|+              +|.+||++|.++|+|.+|++++.+++..++.+++++++... .
T Consensus       443 ~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~  522 (570)
T 4gr5_A          443 GGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADA  522 (570)
T ss_dssp             SCCEEEEEEEEEEECTTSCEEEEEC-------------------------------------------------------
T ss_pred             CCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCC
Confidence            34689999999999999999997              99999999999999999999999888888889998887644 3


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHH
Q psy4975          68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETK  117 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~  117 (126)
                      ..+.+++++++++.|+.|++|.. +++  ++.||+|++||++|++|++..
T Consensus       523 ~~~~~~l~~~l~~~l~~~~~P~~-i~~--v~~lP~t~~GKi~R~~L~~~g  569 (570)
T 4gr5_A          523 PPDAAELRRHVAEALPAYMVPVE-CVP--VDELPRTPNGKLDRRALTGSG  569 (570)
T ss_dssp             --------------------------------------------------
T ss_pred             CcCHHHHHHHHHhhCccccCCcE-EEE--cccCCCCCCcCcchHhhhccC
Confidence            45668899999999999999996 888  899999999999999998753

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=99.89  E-value=7.8e-23  Score=152.47  Aligned_cols=107  Identities=36%  Similarity=0.534  Sum_probs=95.7

Q ss_pred             CCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC-
Q psy4975           5 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV-   69 (126)
Q Consensus         5 ~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-   69 (126)
                      +|||+|||+|+++++|++++.              +|.+||+++.++|+|.+|++++. ++..++.+.+++++.++... 
T Consensus       405 ~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~  483 (529)
T 2v7b_A          405 GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPS  483 (529)
T ss_dssp             TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCC
T ss_pred             cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcc
Confidence            689999999999999999997              99999999999999999999999 66667788899988765432 


Q ss_pred             --CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHH
Q psy4975          70 --TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNE  115 (126)
Q Consensus        70 --~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~  115 (126)
                        ..+++++++++.|+.|++|+. +++  ++.||+|++||++|++|++
T Consensus       484 ~~~~~~l~~~l~~~L~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~  528 (529)
T 2v7b_A          484 EILAEELKAFVKDRLAPHKYPRD-IVF--VDDLPKTATGKIQRFKLRE  528 (529)
T ss_dssp             HHHHHHHHHHHHTTSCTTTSCSE-EEE--ESCCCBCTTSCBCHHHHHC
T ss_pred             hhHHHHHHHHHHhhcchhhCCeE-EEE--eccCCCCCccchhHHhHhh
Confidence              236899999999999999996 888  8999999999999999975

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=99.87  E-value=1.3e-22  Score=164.21  Aligned_cols=111  Identities=28%  Similarity=0.353  Sum_probs=100.2

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      ++++||+|||+|+++++|.++++              +|.+||+++.++|+|.+|+|++.+++..++.++++++...  .
T Consensus       835 ~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~--~  912 (1304)
T 2vsq_A          835 PGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT--Q  912 (1304)
T ss_dssp             TTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS--S
T ss_pred             CCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC--C
Confidence            35679999999999999999997              9999999999999999999999988888889999998754  4


Q ss_pred             CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHh
Q psy4975          69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKV  118 (126)
Q Consensus        69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~  118 (126)
                      .+.+++++++++.||.||+|.. +++  ++.||+|++||++|++|.+...
T Consensus       913 ~~~~~l~~~l~~~Lp~ymvP~~-~~~--l~~lP~t~~GKidR~~L~~~~~  959 (1304)
T 2vsq_A          913 LSAEDVKAHLKKQLPAYMVPQT-FTF--LDELPLTTNGKVNKRLLPKPDQ  959 (1304)
T ss_dssp             SCHHHHHHHHHHHSCGGGSCSE-EEE--ESCCCCCSSCSSCCSCCCCCCG
T ss_pred             CCHHHHHHHHHHhChHhhhccE-EEE--ecccCCCCCcccCHhhcCCcch
Confidence            5678999999999999999996 888  8999999999999999876543

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=99.87  E-value=2e-23  Score=156.61  Aligned_cols=114  Identities=18%  Similarity=0.190  Sum_probs=20.0

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcC-CCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQH-PDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~-~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      +++||+|||+|++|++|+|+|.              +|.+||++|.++ +.+.++++++..++..++..++.++...+..
T Consensus       402 g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~  481 (562)
T 3ite_A          402 GRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAA  481 (562)
T ss_dssp             TEEEEEEEEEEEECTTSCEEEEEEC-------------------------------------------------------
T ss_pred             CCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccccc
Confidence            3459999999999999999997              999999999998 7788999998888887766665555443322


Q ss_pred             C-------------CHHHHHHHHHhhcCCCCCCCccEEEeecCcccCC-CCCccchHHHHHHHhcc
Q psy4975          69 V-------------TAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRT-MSGKVKRKDLNETKVMR  120 (126)
Q Consensus        69 ~-------------~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t-~~GKv~r~~l~~~~~~~  120 (126)
                      .             ..+++++++++.|+.|++|+. +++  ++.||+| ++||++|++|++++...
T Consensus       482 ~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~-i~~--v~~lP~t~~~GKi~r~~L~~~~~~~  544 (562)
T 3ite_A          482 VRGELRWINENYKEINNSLRQACEQTLPAYMVPDF-IIP--ISFIPLRDTSAKTDAKALEHMFHTL  544 (562)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             ccccccccccchhhHHHHHHHHHHhhCCcccCCcE-EEE--eccCCCCCCCCcchHHHHHHHHhcc
Confidence            1             124899999999999999996 999  9999998 89999999999998753

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=99.86  E-value=7.2e-22  Score=150.21  Aligned_cols=105  Identities=24%  Similarity=0.203  Sum_probs=84.6

Q ss_pred             CceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCCH
Q psy4975           6 GWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTA   71 (126)
Q Consensus         6 g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   71 (126)
                      +||+|||+|+++++|+++++              +|.+||+++.++|+|.+|++++.+++..+..+.+++. ..      
T Consensus       396 ~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~-~~------  468 (620)
T 4dg8_A          396 RAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTG-KA------  468 (620)
T ss_dssp             EEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEE-CT------
T ss_pred             eEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEec-Ch------
Confidence            79999999999999999997              9999999999999999999999888765544444443 21      


Q ss_pred             HHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          72 EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        72 ~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      ..+.+.+.+.|+.|++|+. +++  ++.||+|++||++|++|++++...
T Consensus       469 ~~~~~~l~~~Lp~y~~P~~-~~~--v~~lP~t~~GKidR~~L~~~~~~~  514 (620)
T 4dg8_A          469 DASPQALLRQLPTWQRPHA-CVR--VEALPLTAHGKLDRAALLRRLEEP  514 (620)
T ss_dssp             TCCCHHHHHHSCGGGSCSE-EEE--CSSCCCC----CCHHHHHHHTCSC
T ss_pred             HHHHHHHHHhChhhcCCcE-EEE--ECcCCCCcccCHhHHHHhhccccc
Confidence            1234567788999999996 999  999999999999999999887653

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=99.84  E-value=3e-21  Score=145.29  Aligned_cols=114  Identities=17%  Similarity=0.197  Sum_probs=95.1

Q ss_pred             CceecCceEEEcCCCcEEEe--------------ChHHHHHHH-hcCCCcc--eEEEEeeecCCCCCeeEEEEEeCCCC-
Q psy4975           6 GWLHTGDLAYRLPDGTHFII--------------SPCELESIF-RQHPDVE--DVAVIGIPHDVFGELPAAVVVPKPNS-   67 (126)
Q Consensus         6 g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l-~~~~~v~--~~~~~~~~~~~~~~~~~~~v~~~~~~-   67 (126)
                      +||+|||+|+++ +|+|+|.              +|.+||+++ ..+|.|.  +|++++++++. ++.+.+++++.++. 
T Consensus       436 ~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~  513 (590)
T 3kxw_A          436 IYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFM  513 (590)
T ss_dssp             CBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTC
T ss_pred             cEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccc
Confidence            399999999999 9999997              899999999 7889998  89999988876 66777888777653 


Q ss_pred             -CCCHHHHHHHHHhhcCC-CCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975          68 -SVTAEEVKQFVEDQVNP-SKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH  121 (126)
Q Consensus        68 -~~~~~~~~~~l~~~l~~-~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~  121 (126)
                       ..+.+++.+++++.++. ++.|...+.+++++.||+|++||++|++|++++....
T Consensus       514 ~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~  569 (590)
T 3kxw_A          514 DDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKT  569 (590)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHTC
T ss_pred             cchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcCC
Confidence             34557889999998885 7888622677567899999999999999999997643

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.77  E-value=2.5e-19  Score=131.05  Aligned_cols=110  Identities=20%  Similarity=0.156  Sum_probs=90.8

Q ss_pred             CCCceecCceEEEcCC-CcE-----EEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEe
Q psy4975           4 DDGWLHTGDLAYRLPD-GTH-----FII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP   63 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~-g~l-----~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~   63 (126)
                      .++||+|||+|+++++ |++     ++.              +|.+||+++.++|+|.++++++++++..++.+.+++++
T Consensus       304 p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~  383 (443)
T 2y4o_A          304 PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVEL  383 (443)
T ss_dssp             CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEE
Confidence            3689999999999999 986     454              99999999999999999999988887767788888888


Q ss_pred             CC--C---CCCCHHHHHHHHHhhcCCC-CCCCccEEEeecCcccCCCCCccchHHHH
Q psy4975          64 KP--N---SSVTAEEVKQFVEDQVNPS-KRLSGGVFLCSFDFIPRTMSGKVKRKDLN  114 (126)
Q Consensus        64 ~~--~---~~~~~~~~~~~l~~~l~~~-~~p~~~~~~~~~~~lp~t~~GKv~r~~l~  114 (126)
                      .+  +   ...+.+++++++++.|+.+ ..|.. +.++.++.||+|++||++|...+
T Consensus       384 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~-v~~v~~~~lP~t~~GKi~r~~~~  439 (443)
T 2y4o_A          384 RSEAAASVTDGERAALARELQHRIKTMVGVSSG-VTVLAAGGIPATATGKARRVIDR  439 (443)
T ss_dssp             CHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCE-EEEECTTCSCCCTTSCCCSEEEC
T ss_pred             CCcccccchhhHHHHHHHHHHHHHHHHhCCceE-EEEeCCCcccCccCCcceEEEec
Confidence            75  2   1234478999999999887 48885 88855679999999999997543

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.75  E-value=1.3e-18  Score=127.04  Aligned_cols=106  Identities=21%  Similarity=0.164  Sum_probs=83.9

Q ss_pred             CCCceecCceEEEcCCC------c---EEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEE
Q psy4975           4 DDGWLHTGDLAYRLPDG------T---HFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAV   60 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g------~---l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~   60 (126)
                      .++||+|||+|+++++|      +   +++.              +|.+||+++.++|+|.++++++..++..++.+.++
T Consensus       297 ~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~  376 (436)
T 3qov_A          297 PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVE  376 (436)
T ss_dssp             CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEE
T ss_pred             eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEE
Confidence            47899999999999998      5   4554              99999999999999999999999988888899999


Q ss_pred             EEeCCCCCCC----HHHHHHHHHhhcCCC-CCCCccEEEeecCcccCCCCCccchHH
Q psy4975          61 VVPKPNSSVT----AEEVKQFVEDQVNPS-KRLSGGVFLCSFDFIPRTMSGKVKRKD  112 (126)
Q Consensus        61 v~~~~~~~~~----~~~~~~~l~~~l~~~-~~p~~~~~~~~~~~lp~t~~GKv~r~~  112 (126)
                      +++. +...+    .+++.+.+++.|+.+ +.|.. +.++..+.||+|+ ||++|..
T Consensus       377 v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~-i~~v~~~~lP~t~-GKi~R~~  430 (436)
T 3qov_A          377 VELS-DLSTDNYIELEKIRRDIIRQLKDEILVTPK-VKLVKKGSLPQSE-GKAVRVK  430 (436)
T ss_dssp             EEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCE-EEEECTTCCC--------CEE
T ss_pred             EEEc-CccccchhhHHHHHHHHHHHHHHhcCCceE-EEEeCCCcccCcC-CcceEEE
Confidence            9998 54444    578899999999888 89985 8884444999999 9999864

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.73  E-value=8.9e-19  Score=127.95  Aligned_cols=107  Identities=18%  Similarity=0.154  Sum_probs=89.6

Q ss_pred             CCCceecCceEEEcC-CCcE-----EEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEe
Q psy4975           4 DDGWLHTGDLAYRLP-DGTH-----FII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP   63 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~-~g~l-----~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~   63 (126)
                      .++||+|||+|++++ +|++     ++.              +|.+||+++.++|+|.++++++++++..++.+.+++++
T Consensus       302 ~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~  381 (437)
T 2y27_A          302 PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEP  381 (437)
T ss_dssp             CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECB
T ss_pred             hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEE
Confidence            368999999999998 6985     554              99999999999999999999888887777888999988


Q ss_pred             CCCCC---CCHHHHHHHHHhhcCCC-CCCCccEEEeecCcccCCCCCccchHH
Q psy4975          64 KPNSS---VTAEEVKQFVEDQVNPS-KRLSGGVFLCSFDFIPRTMSGKVKRKD  112 (126)
Q Consensus        64 ~~~~~---~~~~~~~~~l~~~l~~~-~~p~~~~~~~~~~~lp~t~~GKv~r~~  112 (126)
                      .++..   .+.+++.+++++.|+.+ .+|.. +.++.++.||+|+ ||++|..
T Consensus       382 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~-v~~v~~~~lP~t~-GKi~r~~  432 (437)
T 2y27_A          382 CPETAPDTAAIQVAKQALAYDIKSLIGVTAV-INVLPVNGIERSV-GKARRVV  432 (437)
T ss_dssp             CTTTTTCHHHHHHHHHHHHHHHHHHHCCCEE-EEECCTTCSCCCS-SSCCCEE
T ss_pred             CCCccchhhhHHHHHHHHHHHHHHhcCCceE-EEEeCCCCccCCC-CcceEEE
Confidence            76543   23478999999999988 58885 8885557999999 9999874

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.42  E-value=4.1e-13  Score=81.04  Aligned_cols=83  Identities=16%  Similarity=0.145  Sum_probs=62.3

Q ss_pred             ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCCCH---HHHHHHHHhhcCCC-CCCCccEEEeecCccc
Q psy4975          26 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTA---EEVKQFVEDQVNPS-KRLSGGVFLCSFDFIP  101 (126)
Q Consensus        26 ~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~l~~~l~~~-~~p~~~~~~~~~~~lp  101 (126)
                      +|.+||+++.++|+|.++++++++++.+++.+.++++..++...+.   +++.+.+++.+..+ .+|.. +.+++.++||
T Consensus        15 ~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv~~~-v~~v~~~~lP   93 (109)
T 3lax_A           15 FPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILVTPR-VKLVPKGALP   93 (109)
T ss_dssp             CHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSCCE-EEEECTTCSC
T ss_pred             CHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCCccc-eEEEcCCeec
Confidence            9999999999999999999999999998999999998887655443   44555555555432 24544 7776677999


Q ss_pred             CCCCCccch
Q psy4975         102 RTMSGKVKR  110 (126)
Q Consensus       102 ~t~~GKv~r  110 (126)
                      +| +||++|
T Consensus        94 rt-sGKi~R  101 (109)
T 3lax_A           94 KS-EGKAVR  101 (109)
T ss_dssp             CC----CCC
T ss_pred             CC-CCCcch
Confidence            98 699987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	126
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	5e-31
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	9e-29
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	8e-28
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	6e-26
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	2e-25
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	6e-25
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	1e-21

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  113 bits (282), Expect = 5e-31
 Identities = 51/127 (40%), Positives = 73/127 (57%), Gaps = 16/127 (12%)

Query: 3   DDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGI 48
           D DGWLH+GD+AY   D   FI              ++P ELESI  QHP++ D  V G+
Sbjct: 410 DKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGL 469

Query: 49  PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
           P D  GELPAAVVV +   ++T +E+  +V  QV  +K+L GGV     D +P+ ++GK+
Sbjct: 470 PDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFV--DEVPKGLTGKL 527

Query: 109 KRKDLNE 115
             + + E
Sbjct: 528 DARKIRE 534

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  106 bits (266), Expect = 9e-29
 Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 17/128 (13%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
           L  DG+  TGD+A    +G   I              IS  +LE+    HP V++ AV+ 
Sbjct: 401 LTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVA 460

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
           IPH  + E P AVVVP+       E  +  ++      +     VF    + IPRT +GK
Sbjct: 461 IPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFA---EEIPRTSAGK 517

Query: 108 VKRKDLNE 115
             ++ L E
Sbjct: 518 FLKRALRE 525

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  104 bits (260), Expect = 8e-28
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 20/130 (15%)

Query: 3   DDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGI 48
                  +GD A R  DG ++I              +   E+ES    HP + + AV+GI
Sbjct: 487 TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGI 546

Query: 49  PHDVFGELPAAVVVPKPNSSVTAE---EVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMS 105
           PH + G+   A V        + E   EV+ +V  ++ P        +    D +P+T S
Sbjct: 547 PHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWT---DSLPKTRS 603

Query: 106 GKVKRKDLNE 115
           GK+ R+ L +
Sbjct: 604 GKIMRRILRK 613

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.8 bits (245), Expect = 6e-26
 Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 27/137 (19%)

Query: 3   DDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGI 48
              G+  TGD A +  DG  +I              +S  E+E+   + P V + AV+G 
Sbjct: 477 PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGF 536

Query: 49  PHDVFGELPAAVVVPKPNSSVTA----------EEVKQFVEDQVNPSKRLSGGVFLCSFD 98
             D+ G+  AA VV K  SS +           + +   V   + P       + +   D
Sbjct: 537 NDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILV---D 593

Query: 99  FIPRTMSGKVKRKDLNE 115
            +P+T SGK+ R+ L +
Sbjct: 594 DLPKTRSGKIMRRILRK 610

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 97.4 bits (241), Expect = 2e-25
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 18/127 (14%)

Query: 4   DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 49
            DGW  T D+A   P+GT  I              I P E+E +    P V +V VIG+ 
Sbjct: 377 QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLA 436

Query: 50  HDVFGELPAAVVVPKPNSSVTAEEVKQFV-EDQVNPSKRLSGGVFLCSFDFIPRTMSGKV 108
              +G+   A VVP+   +++A+ +  F    ++   KR      L   D +P+    KV
Sbjct: 437 DQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFIL---DQLPKNALNKV 493

Query: 109 KRKDLNE 115
            R+ L +
Sbjct: 494 LRRQLVQ 500

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 96.1 bits (238), Expect = 6e-25
 Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 19/128 (14%)

Query: 2   LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 47
           +  +    TGD A  L DG                  +   E+ESI  +H  + + AV  
Sbjct: 387 VPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSV 446

Query: 48  IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGK 107
                      A  V + +  +  E+++QF  +++      S  + L   D +P T +GK
Sbjct: 447 HKDHQEQPYLCAYFVSEKH--IPLEQLRQFSSEELPTYMIPSYFIQL---DKMPLTSNGK 501

Query: 108 VKRKDLNE 115
           + RK L E
Sbjct: 502 IDRKQLPE 509

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 86.6 bits (213), Expect = 1e-21
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 1   MLDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAV 60
            L  DG++     A    +     ++  E+E+    HP V D A++ +P    GE     
Sbjct: 416 RLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVF 475

Query: 61  VVPKPNSSVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNE 115
           ++P+   +  A E+K F+ ++   + ++   V     +  P+T  GKV +K L E
Sbjct: 476 IIPRDE-APKAAELKAFLRERGLAAYKIPDRVEFV--ESFPQTGVGKVSKKALRE 527

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	99.95
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.94
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	99.94
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.94
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.93
d1amua_	514	Phenylalanine activating domain of gramicidin synt	99.93
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	99.92
d1uj4a2	74	D-ribose-5-phosphate isomerase (RpiA), lid domain	81.51

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.2e-27  Score=179.88  Aligned_cols=117  Identities=32%  Similarity=0.409  Sum_probs=100.5

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      +.+|||+|||+|++|++|+|+|.              +|.+||++|.+||+|.+|+|++++++..|+.++++|+++++..
T Consensus       477 ~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~  556 (640)
T d1ry2a_         477 PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSS  556 (640)
T ss_dssp             SSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC----
T ss_pred             CCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCC
Confidence            45799999999999999999997              9999999999999999999999999999999999999987633


Q ss_pred             CC----------HHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975          69 VT----------AEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD  122 (126)
Q Consensus        69 ~~----------~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~  122 (126)
                      ..          .+++..++++.|++|++|+. +++  +++||+|++||++|++|++++.++..
T Consensus       557 ~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~-i~~--v~~lP~T~sGKi~R~~Lr~~~~~~~~  617 (640)
T d1ry2a_         557 WSTATDDELQDIKKHLVFTVRKDIGPFAAPKL-IIL--VDDLPKTRSGKIMRRILRKILAGESD  617 (640)
T ss_dssp             --------CCSHHHHHHHHHHHHTCTTTSCSE-EEE--CSCCCBCTTSCBCHHHHHHSCC----
T ss_pred             ccccchHHHHHHHHHHHHHHHhhCCCCCCceE-EEE--eCCCCCCCCcCccHHHHHHHHhCCcc
Confidence            22          25788899999999999995 999  99999999999999999999877543

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.94  E-value=3.4e-27  Score=178.18  Aligned_cols=115  Identities=29%  Similarity=0.420  Sum_probs=106.5

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      .+|||+|||+|++|++|+|++.              +|.+||++|.+||+|.+|+|++++++..|+.++++|+++++...
T Consensus       488 ~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~  567 (643)
T d1pg4a_         488 FKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEP  567 (643)
T ss_dssp             STTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC
T ss_pred             CCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCCC
Confidence            5899999999999999999997              99999999999999999999999999999999999999988666


Q ss_pred             CH---HHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhccc
Q psy4975          70 TA---EEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRH  121 (126)
Q Consensus        70 ~~---~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~  121 (126)
                      +.   ++++++++++|+++++|+. +++  +++||+|++||++|++|++++.+..
T Consensus       568 ~~~~~~~i~~~~~~~L~~~~vP~~-i~~--v~~lP~T~sGKi~R~~Lr~~~~~~~  619 (643)
T d1pg4a_         568 SPELYAEVRNWVRKEIGPLATPDV-LHW--TDSLPKTRSGKIMRRILRKIAAGDT  619 (643)
T ss_dssp             CHHHHHHHHHHHHHHTCGGGCCSE-EEE--CSCCCBCTTSCBCHHHHHHHHHTC-
T ss_pred             CHHHHHHHHHHHHhhCCcccCccE-EEE--ECCCCCCCCcCccHHHHHHHhcCCc
Confidence            55   4799999999999999995 999  9999999999999999999998754

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=99.94  E-value=2.1e-26  Score=168.87  Aligned_cols=116  Identities=42%  Similarity=0.755  Sum_probs=102.0

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      +.++|||+|||+|+++++|++++.              +|.+||+++.++|+|.+|++++++++..++.++++|+++++.
T Consensus       409 ~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~  488 (541)
T d1lcia_         409 IDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK  488 (541)
T ss_dssp             BCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC
T ss_pred             ccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCC
Confidence            457899999999999999999997              999999999999999999999999999999999999999888


Q ss_pred             CCCHHHHHHHHHhhcCCCC-CCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          68 SVTAEEVKQFVEDQVNPSK-RLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~-~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      ..+.+++++++++++.+++ .|. .+++  ++.||+|++||++|++|++++.+.
T Consensus       489 ~~~~~~l~~~~~~~l~~~~~~p~-~i~~--v~~lP~t~~GKi~r~~l~~~~~~~  539 (541)
T d1lcia_         489 TMTEKEIVDYVASQVTTAKKLRG-GVVF--VDEVPKGLTGKLDARKIREILIKA  539 (541)
T ss_dssp             CCCHHHHHHHHHHHSCGGGSCTT-EEEE--ESSCCC-----CCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCccccCCc-EEEE--eCCCCcCCCcCccHHHHHHHHHHh
Confidence            8888999999999998876 577 4888  899999999999999999998764

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.94  E-value=2.8e-26  Score=165.90  Aligned_cols=111  Identities=32%  Similarity=0.600  Sum_probs=103.6

Q ss_pred             CCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCCC
Q psy4975           4 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV   69 (126)
Q Consensus         4 ~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   69 (126)
                      .+|||+|||+|+++++|++++.              +|.+||+.+.++|+|.+|+|++.+++.+|+.++++|+++++...
T Consensus       377 ~~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~  456 (503)
T d3cw9a1         377 QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETL  456 (503)
T ss_dssp             ETTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC
T ss_pred             cCCceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCC
Confidence            3799999999999999999997              99999999999999999999999999989999999999988888


Q ss_pred             CHHHHHHHHH-hhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHH
Q psy4975          70 TAEEVKQFVE-DQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETK  117 (126)
Q Consensus        70 ~~~~~~~~l~-~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~  117 (126)
                      ..+++.++++ ..|++|++|+. +++  +++||+|++||++|++|++++
T Consensus       457 ~~~~l~~~~~~~~l~~~~~P~~-i~~--v~~~P~t~~GKi~R~~L~~~~  502 (503)
T d3cw9a1         457 SADALDTFCRSSELADFKRPKR-YFI--LDQLPKNALNKVLRRQLVQQV  502 (503)
T ss_dssp             CHHHHHHHHHHSSSCGGGSCSE-EEE--CSCCCBCTTSCBCHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCCCCccE-EEE--ECCCCcCCCcCccHHHHHHhc
Confidence            8999999995 56999999995 888  899999999999999999875

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.93  E-value=9.1e-26  Score=165.14  Aligned_cols=117  Identities=27%  Similarity=0.465  Sum_probs=106.2

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      ++++|||+|||+++++++|+|++.              +|.+||+.+.++|+|.+|++++.+++..++.++++++++++ 
T Consensus       403 ~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~-  481 (536)
T d1mdba_         403 FTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-  481 (536)
T ss_dssp             BCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS-
T ss_pred             ccccCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCC-
Confidence            467899999999999999999997              99999999999999999999999999989999999988765 


Q ss_pred             CCCHHHHHHHHHhh-cCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcccc
Q psy4975          68 SVTAEEVKQFVEDQ-VNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMRHD  122 (126)
Q Consensus        68 ~~~~~~~~~~l~~~-l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~~~  122 (126)
                      ....++++++++++ |++|++|+. +++  ++.||+|++||++|++|++++..++.
T Consensus       482 ~~~~~~l~~~l~~~~l~~~~~P~~-i~~--v~~lP~t~~GKi~r~~L~~~~~~~l~  534 (536)
T d1mdba_         482 APKAAELKAFLRERGLAAYKIPDR-VEF--VESFPQTGVGKVSKKALREAISEKLL  534 (536)
T ss_dssp             CCCHHHHHHHHHHTTCCGGGSCSE-EEE--CSSCCBCTTSCBCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCCCcCcCccE-EEE--ECCCCcCCCcCccHHHHHHHHHHHHh
Confidence            45678899999875 999999995 889  89999999999999999999976643

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=99.93  E-value=4.7e-26  Score=166.41  Aligned_cols=108  Identities=27%  Similarity=0.302  Sum_probs=100.2

Q ss_pred             CCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCCC
Q psy4975           3 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS   68 (126)
Q Consensus         3 ~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~   68 (126)
                      +++|||+|||+|++|++|+|++.              +|.+||+.+.++|+|.+|+|++.+++..+..+++++++.++  
T Consensus       388 ~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~--  465 (514)
T d1amua_         388 PGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH--  465 (514)
T ss_dssp             TTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC--
T ss_pred             CCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCC--
Confidence            56899999999999999999997              99999999999999999999999999999999999988754  


Q ss_pred             CCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHH
Q psy4975          69 VTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNE  115 (126)
Q Consensus        69 ~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~  115 (126)
                      .+.+++++++++.|++|++|.. +++  +++||+|++||++|++|++
T Consensus       466 ~~~~~l~~~~~~~l~~~~~p~~-i~~--v~~lP~t~~GKi~R~~L~~  509 (514)
T d1amua_         466 IPLEQLRQFSSEELPTYMIPSY-FIQ--LDKMPLTSNGKIDRKQLPE  509 (514)
T ss_dssp             CCHHHHHHHHHHHSCGGGSCSE-EEE--CSSCCBCTTSSBCGGGSCC
T ss_pred             CCHHHHHHHHHhhCCcccCceE-EEE--eCCCCCCCCcChhHHhcCC
Confidence            4678999999999999999995 889  9999999999999999876

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=6.5e-27  Score=171.95  Aligned_cols=116  Identities=31%  Similarity=0.447  Sum_probs=67.9

Q ss_pred             CCCCCceecCceEEEcCCCcEEEe--------------ChHHHHHHHhcCCCcceEEEEeeecCCCCCeeEEEEEeCCCC
Q psy4975           2 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS   67 (126)
Q Consensus         2 ~~~~g~~~TGD~~~~~~~g~l~~~--------------~~~~iE~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~   67 (126)
                      ++.+|||+|||+|+++++|++++.              +|.+||+++.+||+|.+|+|++++++.+++.++++|++++..
T Consensus       401 ~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~  480 (534)
T d1v25a_         401 LTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEK  480 (534)
T ss_dssp             BCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC------
T ss_pred             cccCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCC
Confidence            568999999999999999999997              999999999999999999999999999999999999887665


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCccEEEeecCcccCCCCCccchHHHHHHHhcc
Q psy4975          68 SVTAEEVKQFVEDQVNPSKRLSGGVFLCSFDFIPRTMSGKVKRKDLNETKVMR  120 (126)
Q Consensus        68 ~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~lp~t~~GKv~r~~l~~~~~~~  120 (126)
                      ....+.++..+++.|+++++|.. +++  +++||+|++||++|++|+++|++.
T Consensus       481 ~~~~~~~~~~~~~~l~~~~~P~~-i~~--~~~lP~t~~GKi~R~~lr~~~~~~  530 (534)
T d1v25a_         481 PTPEELNEHLLKAGFAKWQLPDA-YVF--AEEIPRTSAGKFLKRALREQYKNY  530 (534)
T ss_dssp             -------------CCCTTTSCSB-C----------------CCTTHHHHSTTS
T ss_pred             CCHHHHHHHHHHhcCCcCCCccE-EEE--ECCCCCCCCccccHHHHHHHHHhh
Confidence            44444555567888999999995 888  899999999999999999998764

>d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase (RpiA), lid domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: D-ribose-5-phosphate isomerase (RpiA), lid domain
family: D-ribose-5-phosphate isomerase (RpiA), lid domain
domain: D-ribose-5-phosphate isomerase (RpiA), lid domain
species: Thermus thermophilus [TaxId: 274]

Probab=81.51  E-value=1  Score=23.32  Aligned_cols=32  Identities=25%  Similarity=0.315  Sum_probs=24.1

Q ss_pred             CceEEEcCCCcEEEe-------ChHHHHHHHhcCCCcce
Q psy4975          11 GDLAYRLPDGTHFII-------SPCELESIFRQHPDVED   42 (126)
Q Consensus        11 GD~~~~~~~g~l~~~-------~~~~iE~~l~~~~~v~~   42 (126)
                      +|-.++.++|.+.+-       .|.+++..|.+.|+|-+
T Consensus        34 ~~~p~iTDnGN~IlD~~~~~i~dp~~l~~~L~~ipGVVe   72 (74)
T d1uj4a2          34 GDEFYFTDGGHLIADCRFGPIGDPLGLHRALLEIPGVVE   72 (74)
T ss_dssp             TTEECCCTTSCEEEEECCCSCSCHHHHHHHHHTSTTEEE
T ss_pred             CCceEEecCCCEEEECCCCCcCCHHHHHHHHHcCCCEec
Confidence            344445666776665       89999999999999865