Psyllid ID: psy5020

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Protein Sequence
MTSDELRLSQIGMKARSPEGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIKLVNIDYL
Secondary Structure (PSIPRED)
cccccHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEccc
Coil and Loop (DISEMBL)
MTSDELRLSQigmkarspeghaakgmqikghediWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFwirkptnqhqFLENVTCALNAINEDGIKLVNIDYL
Flexible Loop (DISEMBL)
mtsdelrlsqigmkarspeghaAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALnainedgiklvnidyl
Low Complexity Region (SEG)
MTSDELRLSQIGMKARSPEGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIKLVNIDYL
Disordered region (IsUnstruct)
***************************IKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIKLVNID**
Disordered Region (DISOPRED)
*************************************IQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKR**********NQHQFLENVTCALNAINEDGIKLVNIDYL
Disordered Region (DISEMBL)
MTSDELRLSQIGMKARSPEGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIKLVNIDYL
Disordered Region (DISPRO)
************************GMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIKLVNIDYL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSDELRLSQIGMKARSPEGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIKLVNIDYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	120	2.2.26 [Sep-21-2011]
Q9VEN1	2210	Filamin-A OS=Drosophila m	no	N/A	0.7	0.038	0.440	3e-17
Q8VHX6	2726	Filamin-C OS=Mus musculus	yes	N/A	0.7	0.030	0.470	9e-15
Q14315	2725	Filamin-C OS=Homo sapiens	yes	N/A	0.7	0.030	0.470	9e-15
O75369	2602	Filamin-B OS=Homo sapiens	no	N/A	0.7	0.032	0.458	1e-14
Q80X90	2602	Filamin-B OS=Mus musculus	no	N/A	0.7	0.032	0.458	4e-14
Q8BTM8	2647	Filamin-A OS=Mus musculus	no	N/A	0.7	0.031	0.435	7e-14
P21333	2647	Filamin-A OS=Homo sapiens	no	N/A	0.7	0.031	0.435	7e-14
P13466	857	Gelation factor OS=Dictyo	yes	N/A	0.691	0.096	0.409	3e-12
Q9QXZ0	7354	Microtubule-actin cross-l	no	N/A	0.65	0.010	0.4	8e-08
D3ZHV2	5430	Microtubule-actin cross-l	no	N/A	0.65	0.014	0.4	8e-08

>sp|Q9VEN1|FLNA_DROME Filamin-A OS=Drosophila melanogaster GN=cher PE=1 SV=2

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 59/84 (70%)

Query: 35  WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQH 94
           W  IQ +TF  W NEHLK++   + +L  DL+DG +L AL+E+L ++++  + ++PT + 
Sbjct: 13  WKKIQQNTFTRWANEHLKTIDRSINNLETDLSDGLRLIALIEVLSQKRMPKYNKRPTFRS 72

Query: 95  QFLENVTCALNAINEDGIKLVNID 118
           Q LENV+ AL  + ++GIK+VNID
Sbjct: 73  QKLENVSVALKFLQDEGIKIVNID 96

Involved in the germline ring canal formation. May tether actin microfilament within the ovarian ring canal to the cell membrane. Contributes to actin microfilaments organization.
Drosophila melanogaster (taxid: 7227)

>sp|Q8VHX6|FLNC_MOUSE Filamin-C OS=Mus musculus GN=Flnc PE=1 SV=3

 Score = 78.6 bits (192), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 55/85 (64%), Gaps = 1/85 (1%)

Query: 35  WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEIL-QKRKLKFWIRKPTNQ 93
           W  IQ +TF  W NEHLK VG  + DL +DL+DG +L AL+E+L QKR  + +  +P  +
Sbjct: 35  WKKIQQNTFTRWCNEHLKCVGKRLTDLQRDLSDGLRLIALLEVLSQKRMYRKFHPRPNFR 94

Query: 94  HQFLENVTCALNAINEDGIKLVNID 118
              LENV+ AL  +  + IKLV+ID
Sbjct: 95  QMKLENVSVALEFLEREHIKLVSID 119

Muscle-specific filamin, which plays a central role in muscle cells, probably by functioning as a large actin-cross-linking protein. May be involved in reorganizing the actin cytoskeleton in response to signaling events, and may also display structural functions at the Z lines in muscle cells. Critical for normal myogenesis and for maintaining the structural integrity of the muscle fibers.

Mus musculus (taxid: 10090)

>sp|Q14315|FLNC_HUMAN Filamin-C OS=Homo sapiens GN=FLNC PE=1 SV=3

 Score = 78.6 bits (192), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 55/85 (64%), Gaps = 1/85 (1%)

Query: 35  WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEIL-QKRKLKFWIRKPTNQ 93
           W  IQ +TF  W NEHLK VG  + DL +DL+DG +L AL+E+L QKR  + +  +P  +
Sbjct: 34  WKKIQQNTFTRWCNEHLKCVGKRLTDLQRDLSDGLRLIALLEVLSQKRMYRKFHPRPNFR 93

Query: 94  HQFLENVTCALNAINEDGIKLVNID 118
              LENV+ AL  +  + IKLV+ID
Sbjct: 94  QMKLENVSVALEFLEREHIKLVSID 118

Muscle-specific filamin, which plays a central role in muscle cells, probably by functioning as a large actin-cross-linking protein. May be involved in reorganizing the actin cytoskeleton in response to signaling events, and may also display structural functions at the Z lines in muscle cells. Critical for normal myogenesis and for maintaining the structural integrity of the muscle fibers.

Homo sapiens (taxid: 9606)

>sp|O75369|FLNB_HUMAN Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 1/85 (1%)

Query: 35  WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEIL-QKRKLKFWIRKPTNQ 93
           W  IQ +TF  W NEHLK V   + +L  DL+DG +L AL+E+L QKR  + + ++PT +
Sbjct: 14  WKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFR 73

Query: 94  HQFLENVTCALNAINEDGIKLVNID 118
              LENV+ AL  ++ + IKLV+ID
Sbjct: 74  QMQLENVSVALEFLDRESIKLVSID 98

Connects cell membrane constituents to the actin cytoskeleton. May promote orthogonal branching of actin filaments and links actin filaments to membrane glycoproteins. Anchors various transmembrane proteins to the actin cytoskeleton. Interaction with FLNA may allow neuroblast migration from the ventricular zone into the cortical plate. Various interactions and localizations of isoforms affect myotube morphology and myogenesis. Isoform 6 accelerates muscle differentiation in vitro.

Homo sapiens (taxid: 9606)

>sp|Q80X90|FLNB_MOUSE Filamin-B OS=Mus musculus GN=Flnb PE=1 SV=3

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 1/85 (1%)

Query: 35  WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEIL-QKRKLKFWIRKPTNQ 93
           W  IQ +TF  W NEHLK V   + +L  DL+DG +L AL+E+L QKR    + ++PT +
Sbjct: 14  WKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMHHKYHQRPTFR 73

Query: 94  HQFLENVTCALNAINEDGIKLVNID 118
              LENV+ AL  ++ + IKLV+ID
Sbjct: 74  QMKLENVSVALEFLDHESIKLVSID 98

Connects cell membrane constituents to the actin cytoskeleton. May promote orthogonal branching of actin filaments and links actin filaments to membrane glycoproteins. Anchors various transmembrane proteins to the actin cytoskeleton.

Mus musculus (taxid: 10090)

>sp|Q8BTM8|FLNA_MOUSE Filamin-A OS=Mus musculus GN=Flna PE=1 SV=5

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 1/85 (1%)

Query: 35  WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL-KFWIRKPTNQ 93
           W  IQ +TF  W NEHLK V   + +L  DL+DG +L AL+E+L ++K+ +   ++PT +
Sbjct: 41  WKKIQQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFR 100

Query: 94  HQFLENVTCALNAINEDGIKLVNID 118
              LENV+ AL  ++ + IKLV+ID
Sbjct: 101 QMQLENVSVALEFLDRESIKLVSID 125

Promotes orthogonal branching of actin filaments and links actin filaments to membrane glycoproteins. Anchors various transmembrane proteins to the actin cytoskeleton and serves as a scaffold for a wide range of cytoplasmic signaling proteins (By similarity). Interaction with FLNA may allow neuroblast migration from the ventricular zone into the cortical plate. Tethers cell surface-localized furin, modulates its rate of internalization and directs its intracellular trafficking.

Mus musculus (taxid: 10090)

>sp|P21333|FLNA_HUMAN Filamin-A OS=Homo sapiens GN=FLNA PE=1 SV=4

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 1/85 (1%)

Query: 35  WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL-KFWIRKPTNQ 93
           W  IQ +TF  W NEHLK V   + +L  DL+DG +L AL+E+L ++K+ +   ++PT +
Sbjct: 41  WKKIQQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFR 100

Query: 94  HQFLENVTCALNAINEDGIKLVNID 118
              LENV+ AL  ++ + IKLV+ID
Sbjct: 101 QMQLENVSVALEFLDRESIKLVSID 125

Promotes orthogonal branching of actin filaments and links actin filaments to membrane glycoproteins. Anchors various transmembrane proteins to the actin cytoskeleton and serves as a scaffold for a wide range of cytoplasmic signaling proteins. Interaction with FLNA may allow neuroblast migration from the ventricular zone into the cortical plate. Tethers cell surface-localized furin, modulates its rate of internalization and directs its intracellular trafficking.

Homo sapiens (taxid: 9606)

>sp|P13466|GELA_DICDI Gelation factor OS=Dictyostelium discoideum GN=abpC PE=1 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 49/83 (59%)

Query: 35  WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQH 94
           W+D+Q  TF  W N +LK   L +EDLA  L DG  L  L+EI+  +K+  + + P  + 
Sbjct: 10  WIDVQKKTFTGWANNYLKERILKIEDLATSLEDGVLLINLLEIISSKKILKYNKAPKIRM 69

Query: 95  QFLENVTCALNAINEDGIKLVNI 117
           Q +EN   A+N I  +G+KLV I
Sbjct: 70  QKIENNNMAVNFIKSEGLKLVGI 92

F-actin cross-linking protein.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9QXZ0|MACF1_MOUSE Microtubule-actin cross-linking factor 1 OS=Mus musculus GN=Macf1 PE=1 SV=2

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 38  IQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFL 97
           +Q  TF  WVN+HL  V  H+ DL +DL DG  L +L+E+L    +K    K   +   L
Sbjct: 79  VQKKTFTKWVNKHLMKVRKHINDLYEDLRDGHNLISLLEVLS--GIKLPREKGRMRFHRL 136

Query: 98  ENVTCALNAINEDGIKLVNI 117
           +NV  AL+ + +  +KLVNI
Sbjct: 137 QNVQIALDFLKQRQVKLVNI 156

Isoform 2 is a F-actin-binding protein which may play a role in cross-linking actin to other cytoskeletal proteins and also binds to microtubules. Plays an important role in ERBB2-dependent stabilization of microtubules at the cell cortex. Acts as a positive regulator of Wnt receptor signaling pathway and is involved in the translocation of AXIN1 and its associated complex (composed of APC, CTNNB1 and GSK3B) from the cytoplasm to the cell membrane. Has actin-regulated ATPase activity and is essential for controlling focal adhesions (FAs) assembly and dynamics. May play role in delivery of transport vesicles containing GPI-linked proteins from the trans-Golgi network through its interaction with GOLGA4. Plays a key role in wound healing and epidermal cell migration. Required for efficient upward migration of bulge cells in response to wounding and this function is primarily rooted in its ability to coordinate MT dynamics and polarize hair follicle stem cells.

Mus musculus (taxid: 10090)

>sp|D3ZHV2|MACF1_RAT Microtubule-actin cross-linking factor 1 OS=Rattus norvegicus GN=Macf1 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 38  IQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFL 97
           +Q  TF  WVN+HL  V  H+ DL +DL DG  L +L+E+L    +K    K   +   L
Sbjct: 79  VQKKTFTKWVNKHLMKVRKHINDLYEDLRDGHNLISLLEVLS--GIKLPREKGRMRFHRL 136

Query: 98  ENVTCALNAINEDGIKLVNI 117
           +NV  AL+ + +  +KLVNI
Sbjct: 137 QNVQIALDFLKQRQVKLVNI 156

F-actin-binding protein which may play a role in cross-linking actin to other cytoskeletal proteins and also binds to microtubules. Plays an important role in ERBB2-dependent stabilization of microtubules at the cell cortex. Acts as a positive regulator of Wnt receptor signaling pathway and is involved in the translocation of AXIN1 and its associated complex (composed of APC, CTNNB1 and GSK3B) from the cytoplasm to the cell membrane. Has actin-regulated ATPase activity and is essential for controlling focal adhesions (FAs) assembly and dynamics. May play role in delivery of transport vesicles containing GPI-linked proteins from the trans-Golgi network through its interaction with GOLGA4. Plays a key role in wound healing and epidermal cell migration. Required for efficient upward migration of bulge cells in response to wounding and this function is primarily rooted in its ability to coordinate MT dynamics and polarize hair follicle stem cells.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
242005614	2862	conserved hypothetical protein [Pediculu	0.966	0.040	0.689	5e-43
170041221	1159	conserved hypothetical protein [Culex qu	0.925	0.095	0.633	1e-36
157108900	740	hypothetical protein AaeL_AAEL015057 [Ae	0.925	0.15	0.633	2e-36
321458954	838	hypothetical protein DAPPUDRAFT_328542 [	0.966	0.138	0.615	1e-35
270003480	2894	hypothetical protein TcasGA2_TC002723 [T	0.941	0.039	0.617	1e-35
91079384	2797	PREDICTED: similar to jitterbug CG30092-	0.958	0.041	0.615	2e-35
312377814	456	hypothetical protein AND_10762 [Anophele	0.925	0.243	0.642	6e-35
194757060	2968	GF11329 [Drosophila ananassae] gi|190622	0.966	0.039	0.589	7e-35
195430546	1617	GK21843 [Drosophila willistoni] gi|19415	0.966	0.071	0.589	7e-35
442624476	2990	jitterbug, isoform N [Drosophila melanog	0.966	0.038	0.589	9e-35

>gi|242005614|ref|XP_002423659.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212506819|gb|EEB10921.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 80/116 (68%), Positives = 93/116 (80%)

Query: 2   TSDELRLSQIGMKARSPEGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDL 61
           + D LRLS +G+ ARSPEGHAAKGM IKG+ED+WV+IQ +TFKNWVNEHLK V + V D 
Sbjct: 3   SKDSLRLSHVGLVARSPEGHAAKGMAIKGNEDLWVEIQANTFKNWVNEHLKRVNMEVIDF 62

Query: 62  AKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIKLVNI 117
             D  DGT+LCALVE+LQKRK+  W +KPTNQH F ENVT ALNAI ED +KLVNI
Sbjct: 63  TSDFIDGTRLCALVELLQKRKIGPWNKKPTNQHHFFENVTMALNAIAEDEVKLVNI 118

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170041221|ref|XP_001848370.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167864816|gb|EDS28199.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/112 (63%), Positives = 86/112 (76%), Gaps = 1/112 (0%)

Query: 7   RLSQIGMKARSPEGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLA 66
           +++Q G+ ARSPEG AAKGM I+G+ED+WV+IQ +TFKNWVNEHL+  G+ V D   D  
Sbjct: 27  KITQAGLVARSPEGTAAKGMNIRGNEDLWVEIQANTFKNWVNEHLRESGMQVTDFHDDFC 86

Query: 67  DGTKLCALVEILQKRKLK-FWIRKPTNQHQFLENVTCALNAINEDGIKLVNI 117
           DGT LCALVE LQKR LK  W ++P NQH +LEN T ALNAI  DG+KLVNI
Sbjct: 87  DGTYLCALVEGLQKRPLKPSWNKRPANQHHYLENATTALNAIEADGVKLVNI 138

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157108900|ref|XP_001650436.1| hypothetical protein AaeL_AAEL015057 [Aedes aegypti] gi|108868494|gb|EAT32719.1| AAEL015057-PA [Aedes aegypti]

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/112 (63%), Positives = 87/112 (77%), Gaps = 1/112 (0%)

Query: 7   RLSQIGMKARSPEGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLA 66
           +++Q G+ ARSPEG AAKGM I+G+ED+WV+IQ +TFKNWVNEH++  GL V D  +D  
Sbjct: 27  KITQAGLVARSPEGTAAKGMNIRGNEDLWVEIQANTFKNWVNEHVRESGLRVNDFHEDFC 86

Query: 67  DGTKLCALVEILQKRKLK-FWIRKPTNQHQFLENVTCALNAINEDGIKLVNI 117
           DGT LCALVE LQKR LK  W ++P NQH +LEN T ALNAI  DG+KLVNI
Sbjct: 87  DGTFLCALVESLQKRPLKPNWNKRPANQHHYLENATTALNAIEADGVKLVNI 138

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321458954|gb|EFX70013.1| hypothetical protein DAPPUDRAFT_328542 [Daphnia pulex]

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/117 (61%), Positives = 87/117 (74%), Gaps = 1/117 (0%)

Query: 1   MTSDELRLSQIGMKARSPEGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVED 60
           M  +   +S  G+ ARSP+GHAA  M IKG+E+IWV+IQTHTF+NWVN+ LK  G  V D
Sbjct: 1   MEDESAYISHSGLVARSPQGHAATSMPIKGNEEIWVEIQTHTFRNWVNDMLKETGFQVRD 60

Query: 61  LAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIKLVNI 117
           L+ DL DG +L AL+E+LQKRKL+  +R P NQHQ LEN T ALNAI  DGIKLVNI
Sbjct: 61  LSTDLCDGVRLVALIEVLQKRKLRNVLR-PVNQHQMLENATTALNAITADGIKLVNI 116

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003480|gb|EEZ99927.1| hypothetical protein TcasGA2_TC002723 [Tribolium castaneum]

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/115 (61%), Positives = 90/115 (78%), Gaps = 2/115 (1%)

Query: 5   ELRLSQIGMKARSPEGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKD 64
           E ++S  G+ ARSPEGHAA+GMQIKG+ED+WV+IQ +TF+NWVNEHL    L V DL++D
Sbjct: 2   EGKISHSGLLARSPEGHAARGMQIKGNEDVWVEIQANTFRNWVNEHLPQ-NLRVADLSQD 60

Query: 65  LADGTKLCALVEILQKRKLK-FWIRKPTNQHQFLENVTCALNAINEDGIKLVNID 118
           L  G +LCALVE L+   LK  W ++P NQH +LENVT ALNAI +DG+KLVNI+
Sbjct: 61  LCTGVRLCALVEALRGHPLKPAWNKRPANQHHYLENVTTALNAIEQDGVKLVNIE 115

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079384|ref|XP_971392.1| PREDICTED: similar to jitterbug CG30092-PD [Tribolium castaneum]

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/117 (61%), Positives = 90/117 (76%), Gaps = 2/117 (1%)

Query: 5   ELRLSQIGMKARSPEGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKD 64
           E ++S  G+ ARSPEGHAA+GMQIKG+ED+WV+IQ +TF+NWVNEHL    L V DL++D
Sbjct: 60  EGKISHSGLLARSPEGHAARGMQIKGNEDVWVEIQANTFRNWVNEHLPQ-NLRVADLSQD 118

Query: 65  LADGTKLCALVEILQKRKLK-FWIRKPTNQHQFLENVTCALNAINEDGIKLVNIDYL 120
           L  G +LCALVE L+   LK  W ++P NQH +LENVT ALNAI +DG+KLVNI  L
Sbjct: 119 LCTGVRLCALVEALRGHPLKPAWNKRPANQHHYLENVTTALNAIEQDGVKLVNIGNL 175

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312377814|gb|EFR24553.1| hypothetical protein AND_10762 [Anopheles darlingi]

 Score =  150 bits (380), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 72/112 (64%), Positives = 88/112 (78%), Gaps = 1/112 (0%)

Query: 7   RLSQIGMKARSPEGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLA 66
           +++Q G+ ARSPEG AAKGM I+G+ED+WV+IQ +TFKNWVNEHL+  GL V +  +D  
Sbjct: 27  KITQAGLVARSPEGTAAKGMNIRGNEDLWVEIQANTFKNWVNEHLRESGLQVIEFHEDFC 86

Query: 67  DGTKLCALVEILQKRKLK-FWIRKPTNQHQFLENVTCALNAINEDGIKLVNI 117
           DGT LCALVE LQKR LK  W ++P NQH +LENVT ALNAI  DG+KLVNI
Sbjct: 87  DGTFLCALVEGLQKRPLKPSWNKRPANQHHYLENVTTALNAIEADGVKLVNI 138

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194757060|ref|XP_001960783.1| GF11329 [Drosophila ananassae] gi|190622081|gb|EDV37605.1| GF11329 [Drosophila ananassae]

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 69/117 (58%), Positives = 86/117 (73%), Gaps = 1/117 (0%)

Query: 2   TSDELRLSQIGMKARSPEGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDL 61
           T++  +++  G+ ARSPEG AAKGM I+G+ED+WV+IQ +TF+NWVNEHL+  G+ V D 
Sbjct: 24  TTETQKITHAGLVARSPEGTAAKGMNIRGNEDLWVEIQANTFRNWVNEHLRETGMQVHDW 83

Query: 62  AKDLADGTKLCALVEILQKRKLK-FWIRKPTNQHQFLENVTCALNAINEDGIKLVNI 117
           A D  DGT LCALVE LQ R LK  W R+P NQH +LEN T AL +I  D IKLVNI
Sbjct: 84  ATDFCDGTCLCALVESLQTRPLKPSWNRRPANQHHYLENATTALKSIEADHIKLVNI 140

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195430546|ref|XP_002063315.1| GK21843 [Drosophila willistoni] gi|194159400|gb|EDW74301.1| GK21843 [Drosophila willistoni]

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 69/117 (58%), Positives = 86/117 (73%), Gaps = 1/117 (0%)

Query: 2   TSDELRLSQIGMKARSPEGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDL 61
           T++  +++  G+ ARSPEG AAKGM I+G+ED+WV+IQ +TF+NWVNEHL+  G+ V D 
Sbjct: 24  TTETQKITHAGLVARSPEGTAAKGMNIRGNEDLWVEIQANTFRNWVNEHLRETGMQVHDW 83

Query: 62  AKDLADGTKLCALVEILQKRKLK-FWIRKPTNQHQFLENVTCALNAINEDGIKLVNI 117
           A D  DGT LCALVE LQ R LK  W R+P NQH FLEN + AL +I  D IKLVNI
Sbjct: 84  ATDFCDGTCLCALVESLQTRPLKPSWNRRPANQHHFLENASTALKSIEADHIKLVNI 140

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442624476|ref|NP_001261140.1| jitterbug, isoform N [Drosophila melanogaster] gi|440214586|gb|AGB93671.1| jitterbug, isoform N [Drosophila melanogaster]

 Score =  150 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 69/117 (58%), Positives = 86/117 (73%), Gaps = 1/117 (0%)

Query: 2   TSDELRLSQIGMKARSPEGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDL 61
           T++  +++  G+ ARSPEG AAKGM I+G+ED+WV+IQ +TF+NWVNEHL+  G+ V D 
Sbjct: 24  TTETQKITHAGLVARSPEGTAAKGMNIRGNEDLWVEIQANTFRNWVNEHLRETGMQVHDW 83

Query: 62  AKDLADGTKLCALVEILQKRKLK-FWIRKPTNQHQFLENVTCALNAINEDGIKLVNI 117
           A D  DGT LCALVE LQ R LK  W R+P NQH +LEN T AL +I  D IKLVNI
Sbjct: 84  ATDFCDGTCLCALVENLQTRPLKPSWNRRPANQHHYLENATTALKSIEADHIKLVNI 140

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
FB|FBgn0028371	2955	jbug "jitterbug" [Drosophila m	0.966	0.039	0.589	2.4e-31
FB|FBgn0014141	2399	cher "cheerio" [Drosophila mel	0.725	0.036	0.443	4.3e-15
ZFIN|ZDB-GENE-090313-85	248	si:ch211-222g5.6 "si:ch211-222	0.7	0.338	0.423	6.2e-14
WB|WBGene00016006	3720	fln-2 [Caenorhabditis elegans	0.666	0.021	0.517	6.2e-14
UNIPROTKB|F8WE98	604	FLNA "Filamin-A" [Homo sapiens	0.725	0.144	0.438	3.2e-13
RGD|1308807	2693	Flnc "filamin C, gamma" [Rattu	0.725	0.032	0.471	4e-13
UNIPROTKB|E2RP26	2720	FLNC "Uncharacterized protein"	0.725	0.031	0.471	4e-13
UNIPROTKB|F1SMN5	2720	FLNC "Uncharacterized protein"	0.725	0.031	0.471	4e-13
UNIPROTKB|E1BE25	2723	E1BE25 "Uncharacterized protei	0.725	0.031	0.471	4e-13
UNIPROTKB|Q14315	2725	FLNC "Filamin-C" [Homo sapiens	0.725	0.031	0.471	4e-13

FB|FBgn0028371 jbug "jitterbug" [Drosophila melanogaster (taxid:7227)]

 Score = 362 (132.5 bits), Expect = 2.4e-31, P = 2.4e-31
 Identities = 69/117 (58%), Positives = 86/117 (73%)

Query:     2 TSDELRLSQIGMKARSPEGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDL 61
             T++  +++  G+ ARSPEG AAKGM I+G+ED+WV+IQ +TF+NWVNEHL+  G+ V D 
Sbjct:    24 TTETQKITHAGLVARSPEGTAAKGMNIRGNEDLWVEIQANTFRNWVNEHLRETGMQVHDW 83

Query:    62 AKDLADGTKLCALVEILQKRKLK-FWIRKPTNQHQFLENVTCALNAINEDGIKLVNI 117
             A D  DGT LCALVE LQ R LK  W R+P NQH +LEN T AL +I  D IKLVNI
Sbjct:    84 ATDFCDGTCLCALVENLQTRPLKPSWNRRPANQHHYLENATTALKSIEADHIKLVNI 140

GO:0003779 "actin binding" evidence=ISS

GO:0009612 "response to mechanical stimulus" evidence=IGI

GO:0048104 "establishment of body hair or bristle planar orientation" evidence=IMP

FB|FBgn0014141 cher "cheerio" [Drosophila melanogaster (taxid:7227)]

 Score = 208 (78.3 bits), Expect = 4.3e-15, P = 4.3e-15
 Identities = 39/88 (44%), Positives = 61/88 (69%)

Query:    32 EDI-WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKP 90
             ED  W  IQ +TF  W NEHLK++   + +L  DL+DG +L AL+E+L ++++  + ++P
Sbjct:     9 EDAQWKKIQQNTFTRWANEHLKTIDRSINNLETDLSDGLRLIALIEVLSQKRMPKYNKRP 68

Query:    91 TNQHQFLENVTCALNAINEDGIKLVNID 118
             T + Q LENV+ AL  + ++GIK+VNID
Sbjct:    69 TFRSQKLENVSVALKFLQDEGIKIVNID 96

GO:0007301 "female germline ring canal formation" evidence=IMP

GO:0008104 "protein localization" evidence=IMP

GO:0003779 "actin binding" evidence=ISS

GO:0035183 "female germline ring canal inner rim" evidence=IDA

GO:0035182 "female germline ring canal outer rim" evidence=IDA

GO:0008302 "female germline ring canal formation, actin assembly" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0007611 "learning or memory" evidence=IMP

GO:0030708 "germarium-derived female germ-line cyst encapsulation" evidence=IMP

GO:0030725 "germline ring canal formation" evidence=IMP

GO:0035204 "negative regulation of lamellocyte differentiation" evidence=IMP

GO:0048149 "behavioral response to ethanol" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

ZFIN|ZDB-GENE-090313-85 si:ch211-222g5.6 "si:ch211-222g5.6" [Danio rerio (taxid:7955)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 36/85 (42%), Positives = 55/85 (64%)

Query:    35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQ-KRKLKFWIRKPTNQ 93
             W  IQ +TF  W NEHL+SV + + DL  DL+DG  L +L+E+L  KR  + +  +PT +
Sbjct:    14 WKKIQKNTFTRWCNEHLRSVNMRISDLKTDLSDGLVLISLLEVLSHKRMFRKYHTRPTFR 73

Query:    94 HQFLENVTCALNAINEDGIKLVNID 118
                L+NV+ AL  ++ + +KLV+ID
Sbjct:    74 QLKLDNVSVALEFLDHEKVKLVSID 98

GO:0003779 "actin binding" evidence=IEA

WB|WBGene00016006 fln-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 199 (75.1 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 44/85 (51%), Positives = 57/85 (67%)

Query:    35 WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL--KFWIRKPTN 92
             W+DIQ HTF NW+NE L+  G  + DL +DL+DG  L  LVEILQ R+   K + + PT 
Sbjct:    12 WIDIQLHTFTNWINEQLQ--GNVIRDLTQDLSDGVNLIKLVEILQGRRYYGKVYDQDPT- 68

Query:    93 QHQFLENVTCALNAINEDGIKLVNI 117
             + Q L NV  AL+A+ EDG+K VNI
Sbjct:    69 EIQKLMNVQMALDALREDGVKTVNI 93

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

UNIPROTKB|F8WE98 FLNA "Filamin-A" [Homo sapiens (taxid:9606)]

 Score = 183 (69.5 bits), Expect = 3.2e-13, P = 3.2e-13
 Identities = 39/89 (43%), Positives = 58/89 (65%)

Query:    32 EDI-WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL-KFWIRK 89
             ED  W  IQ +TF  W NEHLK V   + +L  DL+DG +L AL+E+L ++K+ +   ++
Sbjct:    23 EDAPWKKIQQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQR 82

Query:    90 PTNQHQFLENVTCALNAINEDGIKLVNID 118
             PT +   LENV+ AL  ++ + IKLV+ID
Sbjct:    83 PTFRQMQLENVSVALEFLDRESIKLVSID 111

GO:0003779 "actin binding" evidence=IEA

RGD|1308807 Flnc "filamin C, gamma" [Rattus norvegicus (taxid:10116)]

 Score = 190 (71.9 bits), Expect = 4.0e-13, P = 4.0e-13
 Identities = 42/89 (47%), Positives = 57/89 (64%)

Query:    32 EDI-WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEIL-QKRKLKFWIRK 89
             ED  W  IQ +TF  W NEHLK VG  + DL +DL+DG +L AL+E+L QKR  + +  +
Sbjct:    31 EDAPWKKIQQNTFTRWCNEHLKCVGKRLTDLQRDLSDGLRLIALLEVLSQKRMYRKFHPR 90

Query:    90 PTNQHQFLENVTCALNAINEDGIKLVNID 118
             P  +   LENV+ AL  +  + IKLV+ID
Sbjct:    91 PNFRQMKLENVSVALEFLEREHIKLVSID 119

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0008092 "cytoskeletal protein binding" evidence=ISO

GO:0030506 "ankyrin binding" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0048747 "muscle fiber development" evidence=ISO

UNIPROTKB|E2RP26 FLNC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 4.0e-13, P = 4.0e-13
 Identities = 42/89 (47%), Positives = 57/89 (64%)

Query:    32 EDI-WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEIL-QKRKLKFWIRK 89
             ED  W  IQ +TF  W NEHLK VG  + DL +DL+DG +L AL+E+L QKR  + +  +
Sbjct:    31 EDAPWKKIQQNTFTRWCNEHLKCVGKRLTDLQRDLSDGLRLIALLEVLSQKRMYRKFHPR 90

Query:    90 PTNQHQFLENVTCALNAINEDGIKLVNID 118
             P  +   LENV+ AL  +  + IKLV+ID
Sbjct:    91 PNFRQMKLENVSVALEFLEREHIKLVSID 119

GO:0048747 "muscle fiber development" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0030506 "ankyrin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|F1SMN5 FLNC "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 190 (71.9 bits), Expect = 4.0e-13, P = 4.0e-13
 Identities = 42/89 (47%), Positives = 57/89 (64%)

Query:    32 EDI-WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEIL-QKRKLKFWIRK 89
             ED  W  IQ +TF  W NEHLK VG  + DL +DL+DG +L AL+E+L QKR  + +  +
Sbjct:    31 EDAPWKKIQQNTFTRWCNEHLKCVGKRLTDLQRDLSDGLRLIALLEVLSQKRMYRKFHPR 90

Query:    90 PTNQHQFLENVTCALNAINEDGIKLVNID 118
             P  +   LENV+ AL  +  + IKLV+ID
Sbjct:    91 PNFRQMKLENVSVALEFLEREHIKLVSID 119

GO:0048747 "muscle fiber development" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0030506 "ankyrin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|E1BE25 E1BE25 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 190 (71.9 bits), Expect = 4.0e-13, P = 4.0e-13
 Identities = 42/89 (47%), Positives = 57/89 (64%)

Query:    32 EDI-WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEIL-QKRKLKFWIRK 89
             ED  W  IQ +TF  W NEHLK VG  + DL +DL+DG +L AL+E+L QKR  + +  +
Sbjct:    31 EDAPWKKIQQNTFTRWCNEHLKCVGKRLTDLQRDLSDGLRLIALLEVLSQKRMYRKFHPR 90

Query:    90 PTNQHQFLENVTCALNAINEDGIKLVNID 118
             P  +   LENV+ AL  +  + IKLV+ID
Sbjct:    91 PNFRQMKLENVSVALEFLEREHIKLVSID 119

GO:0048747 "muscle fiber development" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0030506 "ankyrin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|Q14315 FLNC "Filamin-C" [Homo sapiens (taxid:9606)]

 Score = 190 (71.9 bits), Expect = 4.0e-13, P = 4.0e-13
 Identities = 42/89 (47%), Positives = 57/89 (64%)

Query:    32 EDI-WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEIL-QKRKLKFWIRK 89
             ED  W  IQ +TF  W NEHLK VG  + DL +DL+DG +L AL+E+L QKR  + +  +
Sbjct:    30 EDAPWKKIQQNTFTRWCNEHLKCVGKRLTDLQRDLSDGLRLIALLEVLSQKRMYRKFHPR 89

Query:    90 PTNQHQFLENVTCALNAINEDGIKLVNID 118
             P  +   LENV+ AL  +  + IKLV+ID
Sbjct:    90 PNFRQMKLENVSVALEFLEREHIKLVSID 118

GO:0003779 "actin binding" evidence=IEA

GO:0016528 "sarcoplasm" evidence=IEA

GO:0048747 "muscle fiber development" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008092 "cytoskeletal protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0034329 "cell junction assembly" evidence=TAS

GO:0042383 "sarcolemma" evidence=IDA

GO:0030506 "ankyrin binding" evidence=IPI

GO:0043034 "costamere" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	120
cd00014	107	cd00014, CH, Calponin homology domain; actin-bindi	2e-15
smart00033	101	smart00033, CH, Calponin homology domain	2e-13
pfam00307	104	pfam00307, CH, Calponin homology (CH) domain	5e-11
COG5069	612	COG5069, SAC6, Ca2+-binding actin-bundling protein	1e-08

>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

 Score = 66.2 bits (162), Expect = 2e-15
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 38  IQTHTFKNWVNEHL-KSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQF 96
            Q      W+N+ L +   + + + + DL DG  LC L+  L    +      P ++ + 
Sbjct: 1   SQKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKR 60

Query: 97  LENVTCALNAINEDGIKLVNID 118
           LEN+  ALN   + G+ +VN D
Sbjct: 61  LENINLALNFAEKLGVPVVNFD 82

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav). Length = 107

>gnl|CDD|214479 smart00033, CH, Calponin homology domain

 Score = 60.8 bits (148), Expect = 2e-13
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 41  HTFKNWVNEHL-KSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFW-IRKPTNQHQFLE 98
            T   WVN  L +     V + + DL DG  LCAL+  L    +    +    ++ + +E
Sbjct: 1   KTLLRWVNSLLAEYDKPPVTNFSSDLKDGVALCALLNSLSPGLVDKKKVAASLSRFKKIE 60

Query: 99  NVTCALNAINEDGIKLVNID 118
           N+  AL+   + G K+V  +
Sbjct: 61  NINLALSFAEKLGGKVVLFE 80

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p. Length = 101

>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain

 Score = 54.6 bits (132), Expect = 5e-11
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 41  HTFKNWVNEHL-KSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLEN 99
                W+NE L +  GL V +  +DL DG  LCAL+  L+   +           + LEN
Sbjct: 2   KALLRWINEVLGEYGGLPVTNFFEDLRDGLALCALLNKLRPGLIDLKKVNKNRFDK-LEN 60

Query: 100 VTCALNAINED-GIKLVN 116
           +  AL    +  G+  V 
Sbjct: 61  LNLALEFAEKKLGVPKVL 78

The CH domain is found in both cytoskeletal proteins and signal transduction proteins. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity. Most member proteins have from two to four copies of the CH domain, however some proteins such as calponin have only a single copy. Length = 104

>gnl|CDD|227401 COG5069, SAC6, Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

 Score = 51.5 bits (123), Expect = 1e-08
 Identities = 34/84 (40%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 35  WVDIQTHTFKNWVNEHLKSVGL-HVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQ 93
           W  +Q  TF  W NE L S G     DL  DL DG KL  L+E LQK     +   P  +
Sbjct: 6   WQKVQKKTFTKWTNEKLISGGQKEFGDLDTDLKDGVKLAQLLEALQKDNAGEYNETPETR 65

Query: 94  HQFLENVTCALNAINEDGIKLVNI 117
              +ENV+  L  I   G+KL NI
Sbjct: 66  IHVMENVSGRLEFIKGKGVKLFNI 89

Length = 612

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	120
KOG0517|consensus	2473		99.92
cd00014	107	CH Calponin homology domain; actin-binding domain	99.67
smart00033	103	CH Calponin homology domain. Actin binding domains	99.67
COG5069	612	SAC6 Ca2+-binding actin-bundling protein fimbrin/p	99.5
PF00307	108	CH: Calponin homology (CH) domain; InterPro: IPR00	99.5
KOG0035|consensus	890		99.36
KOG0046|consensus	627		99.31
KOG0046|consensus	627		99.02
KOG2046|consensus	193		99.0
KOG3631|consensus	365		98.97
COG5069	612	SAC6 Ca2+-binding actin-bundling protein fimbrin/p	98.34
COG5199	178	SCP1 Calponin [Cytoskeleton]	98.33
PF11971	85	CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T	97.95
KOG0532|consensus	722		96.92
KOG0516|consensus	1047		96.92
PF06294	158	DUF1042: Domain of Unknown Function (DUF1042); Int	96.8
KOG2996|consensus	865		96.72
KOG0518|consensus	1113		96.45
KOG3631|consensus	365		96.3
COG5261	1054	IQG1 Protein involved in regulation of cellular mo	94.82
KOG2128|consensus	1401		94.08
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	93.11

>KOG0517|consensus

Probab=99.92  E-value=5.5e-26  Score=207.68  Aligned_cols=93  Identities=35%  Similarity=0.469  Sum_probs=90.5

Q ss_pred             cccccchhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHH
Q psy5020          26 MQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALN  105 (120)
Q Consensus        26 ~~~~~~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~  105 (120)
                      .+||.++++.+.+|+||||+|||+||..+++.|.|||+||+||+.|+.|||+|||+.+|++. +++||+||+|||++||+
T Consensus        36 sRIKaLadERe~vQKKTFTKWvNShL~rv~c~I~DLy~DlrDG~~LlkLLEvlSGE~LpkPt-rGRMRIH~LENvdKaLq  114 (2473)
T KOG0517|consen   36 SRIKALADEREAVQKKTFTKWVNSHLARVSCRIGDLYTDLRDGIMLLKLLEVLSGERLPKPT-RGRMRIHCLENVDKALQ  114 (2473)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcchhHHHHHHHhhhHHHHHHHHHHccccCCCCC-CCceeehhHhhhHHHHH
Confidence            49999999999999999999999999999999999999999999999999999999999985 79999999999999999


Q ss_pred             HHHhCCCeEeccCC
Q psy5020         106 AINEDGIKLVNIDY  119 (120)
Q Consensus       106 flk~~gi~lvnI~~  119 (120)
                      ||++..|+|.|||+
T Consensus       115 FLkeqkVhLEniGs  128 (2473)
T KOG0517|consen  115 FLKEQKVHLENIGS  128 (2473)
T ss_pred             HHHhcccccccCCc
Confidence            99999999999997

>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

Probab=99.67  E-value=2.1e-16  Score=106.29  Aligned_cols=80  Identities=30%  Similarity=0.505  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHhhcccCC-cccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhCCCeEecc
Q psy5020          39 QTHTFKNWVNEHLKSVGL-HVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIKLVNI  117 (120)
Q Consensus        39 Q~ktft~WiN~~L~~~~~-~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~gi~lvnI  117 (120)
                      |++++++|||.++..... .++|+.++|+||+.||+|++.+++..++....+|.+++++++|++.+|+++++.||...++
T Consensus         2 ~~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~~~~   81 (107)
T cd00014           2 QKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVPVVNF   81 (107)
T ss_pred             hHHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCceecc
Confidence            678999999999988876 7999999999999999999999999987755458899999999999999999999987654


Q ss_pred             C
Q psy5020         118 D  118 (120)
Q Consensus       118 ~  118 (120)
                      .
T Consensus        82 ~   82 (107)
T cd00014          82 D   82 (107)
T ss_pred             C
Confidence            3

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).

>smart00033 CH Calponin homology domain

Probab=99.67  E-value=2.7e-16  Score=104.77  Aligned_cols=80  Identities=29%  Similarity=0.434  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHhhcccC-CcccchhhhhhhHHHHHHHHHHHcCccccc-ccCCCCcHHHHHhhHHHHHHHHHhCCCeEecc
Q psy5020          40 THTFKNWVNEHLKSVG-LHVEDLAKDLADGTKLCALVEILQKRKLKF-WIRKPTNQHQFLENVTCALNAINEDGIKLVNI  117 (120)
Q Consensus        40 ~ktft~WiN~~L~~~~-~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~-~~~~p~~r~qkieNv~~aL~flk~~gi~lvnI  117 (120)
                      ++++++|+|.++.... .+++|+.++|+||+.||+|++.+.+..++. ....|++++++++|++.|++++++.|+..+.+
T Consensus         2 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~g~~~~~~   81 (103)
T smart00033        2 EKTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKLGGKLVLF   81 (103)
T ss_pred             hHHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHcCCeeecc
Confidence            5789999999998874 789999999999999999999999999876 33358889999999999999999999877777


Q ss_pred             CC
Q psy5020         118 DY  119 (120)
Q Consensus       118 ~~  119 (120)
                      .+
T Consensus        82 ~~   83 (103)
T smart00033       82 EP   83 (103)
T ss_pred             CH
Confidence            54

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.

>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

Probab=99.50  E-value=7.6e-15  Score=123.14  Aligned_cols=88  Identities=39%  Similarity=0.593  Sum_probs=83.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhhcccCC-cccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhC
Q psy5020          32 EDIWVDIQTHTFKNWVNEHLKSVGL-HVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINED  110 (120)
Q Consensus        32 ~~~w~~~Q~ktft~WiN~~L~~~~~-~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~  110 (120)
                      +.+|+.+|+++|+.|.|..|...+. .+.||..|++||+.|++||+++..+....|+..|.+|+|.++|++.+|+|.+..
T Consensus         3 a~kwq~vq~ktftkw~nekL~s~~~~~~~dL~~Dl~dgv~l~qlLe~~~kd~~g~yn~~p~tr~h~~envs~~le~ik~k   82 (612)
T COG5069           3 AKKWQKVQKKTFTKWTNEKLISGGQKEFGDLDTDLKDGVKLAQLLEALQKDNAGEYNETPETRIHVMENVSGRLEFIKGK   82 (612)
T ss_pred             hHHHHHHhhccchHHHhHHHhhcccHHHhhhccccccHHHHHHHHHHhhhccccccCCCHHHHHHHhhccccceeeeccC
Confidence            5689999999999999999987664 799999999999999999999999888899999999999999999999999999


Q ss_pred             CCeEeccCC
Q psy5020         111 GIKLVNIDY  119 (120)
Q Consensus       111 gi~lvnI~~  119 (120)
                      |+++.||+|
T Consensus        83 g~~l~Nigp   91 (612)
T COG5069          83 GVKLFNIGP   91 (612)
T ss_pred             CceeeeeCc
Confidence            999999997

>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []

Probab=99.50  E-value=1.3e-13  Score=92.57  Aligned_cols=76  Identities=30%  Similarity=0.524  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhhccc--CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCC--CcHHHHHhhHHHHHHHHHh-CCCeE
Q psy5020          40 THTFKNWVNEHLKSV--GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKP--TNQHQFLENVTCALNAINE-DGIKL  114 (120)
Q Consensus        40 ~ktft~WiN~~L~~~--~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p--~~r~qkieNv~~aL~flk~-~gi~l  114 (120)
                      ++.+.+|||+++...  +.+|.|+.+||+||+.||.|++.+.|..++....+|  ++.+++++|++.|++++++ .|+..
T Consensus         1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~   80 (108)
T PF00307_consen    1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGIPP   80 (108)
T ss_dssp             HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCCCC
Confidence            467999999999887  568999999999999999999999999875322222  3899999999999999999 88875


Q ss_pred             e
Q psy5020         115 V  115 (120)
Q Consensus       115 v  115 (120)
                      .
T Consensus        81 ~   81 (108)
T PF00307_consen   81 L   81 (108)
T ss_dssp             T
T ss_pred             C
Confidence            4

It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....

>KOG0035|consensus

Probab=99.36  E-value=6.4e-14  Score=124.09  Aligned_cols=88  Identities=32%  Similarity=0.520  Sum_probs=83.2

Q ss_pred             chhhHHHHHHHHHHHHHHHhhc-ccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh
Q psy5020          31 HEDIWVDIQTHTFKNWVNEHLK-SVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE  109 (120)
Q Consensus        31 ~~~~w~~~Q~ktft~WiN~~L~-~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~  109 (120)
                      +++.|+++|.+||+.|+|++|. +.+-.|.+++.|++||+.|+.|++.++|+.++++. ++++|+|++||++.+|.|.+.
T Consensus        20 ~~~~~e~~q~kTft~W~~s~L~ir~~s~ie~~e~D~~n~lk~~~l~ev~~~e~l~~~~-~~~~r~hk~En~~~~l~~~~s   98 (890)
T KOG0035|consen   20 LTPAWEKVQLKTFTKWCNSKLRIRAGSSIEEIEEDFSNGLKLLILLEVISGENLPPPT-RGKMRVHKLENVNKALVFIES   98 (890)
T ss_pred             cCccHHHHhccccccccchhhhhcccCccchhhhhhhhhhhhhhhcccccCCccCCCC-CCccchhhhccccceEEEecc
Confidence            8899999999999999999998 66678999999999999999999999999999876 469999999999999999999


Q ss_pred             CCCeEeccCC
Q psy5020         110 DGIKLVNIDY  119 (120)
Q Consensus       110 ~gi~lvnI~~  119 (120)
                      .|+++++|++
T Consensus        99 k~v~~~~iga  108 (890)
T KOG0035|consen   99 KGVKLVSIGA  108 (890)
T ss_pred             ccccccccch
Confidence            9999999984

>KOG0046|consensus

Probab=99.31  E-value=5.8e-12  Score=106.76  Aligned_cols=84  Identities=24%  Similarity=0.253  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccCC---CCcHHHHHhhHHHHHHHHH
Q psy5020          34 IWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRK---PTNQHQFLENVTCALNAIN  108 (120)
Q Consensus        34 ~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~---p~~r~qkieNv~~aL~flk  108 (120)
                      ..+...+++|+.|+|+ | ....+|+++++|++||.+|.++++++++..+.  +.+++   -++.|+++|||++|.+..+
T Consensus       384 ~~~~reer~fr~WmNS-l-gv~p~vn~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~~~~~~~~kklENcNyav~lGk  461 (627)
T KOG0046|consen  384 EEESREERTFRLWMNS-L-GVNPYVNNLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPPSPLKMPFKKVENCNYAVKLGK  461 (627)
T ss_pred             HhHHHHHHHHHHHHHh-c-CCcHHHHHHHHhhhhhhHHHHHHHHccCCccchhhccCCCCcccccHHHhhcchHHHHHHh
Confidence            4456678999999999 5 46679999999999999999999999997653  12222   2567999999999999999


Q ss_pred             hCCCeEeccCC
Q psy5020         109 EDGIKLVNIDY  119 (120)
Q Consensus       109 ~~gi~lvnI~~  119 (120)
                      +.++.+|||+|
T Consensus       462 ~~~FSLVgi~G  472 (627)
T KOG0046|consen  462 QLKFSLVGIAG  472 (627)
T ss_pred             hcceeeecccc
Confidence            99999999986

>KOG0046|consensus

Probab=99.02  E-value=1.5e-10  Score=98.24  Aligned_cols=85  Identities=27%  Similarity=0.332  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHHhhcccC-----C----cccchhhhhhhHHHHHHHHHHHcCccccc--cc-CCCCcHHHHHhhHHH
Q psy5020          35 WVDIQTHTFKNWVNEHLKSVG-----L----HVEDLAKDLADGTKLCALVEILQKRKLKF--WI-RKPTNQHQFLENVTC  102 (120)
Q Consensus        35 w~~~Q~ktft~WiN~~L~~~~-----~----~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~--~~-~~p~~r~qkieNv~~  102 (120)
                      ..+.++.+|++|||++|+...     +    .-.+||+.++||+.||.|++.-.+.++..  ++ +++-+.+++.||.+.
T Consensus       116 i~eeEk~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~kk~Lnp~~~~EN~~l  195 (627)
T KOG0046|consen  116 INEEEKRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINTKKKLNPFERNENLNL  195 (627)
T ss_pred             ecHHHHHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhccCCcCChhhhccchhh
Confidence            345678899999999998764     1    34679999999999999999999999864  44 567789999999999


Q ss_pred             HHHHHHhCCCeEeccCC
Q psy5020         103 ALNAINEDGIKLVNIDY  119 (120)
Q Consensus       103 aL~flk~~gi~lvnI~~  119 (120)
                      ||.-.+..|+.+||||+
T Consensus       196 ~lnSAkAiGc~VvNIga  212 (627)
T KOG0046|consen  196 ALNSAKAIGCTVVNIGA  212 (627)
T ss_pred             HHhhcccccceEEecCc
Confidence            99999999999999985

>KOG2046|consensus

Probab=99.00  E-value=1.3e-09  Score=82.51  Aligned_cols=84  Identities=21%  Similarity=0.314  Sum_probs=68.7

Q ss_pred             chhhHHHHHHHHHHHHHHHhhcccCC-cccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh
Q psy5020          31 HEDIWVDIQTHTFKNWVNEHLKSVGL-HVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE  109 (120)
Q Consensus        31 ~~~~w~~~Q~ktft~WiN~~L~~~~~-~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~  109 (120)
                      +++.+....++..+.||-..+. .+. .=.|+.+-|+||++||.|+++|.+..+++.+ .|++.|++|||++..+.++++
T Consensus        18 ~~~k~~~~~~~el~~WI~~~~~-~~~~~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~-~s~~~f~qmEnIs~Fi~a~~~   95 (193)
T KOG2046|consen   18 IESKYDDELEKELREWIENVVL-TELPARGDFQDLLKDGVILCKLINKLYPGVVKKIN-ESKMAFVQMENISNFIKAAKK   95 (193)
T ss_pred             hhcccCHHHHHHHHHHHHHhhc-cCCCcccCHHHHHcchHHHHHHHHHhCcCcccccc-cccccHHHHHHHHHHHHHHHh
Confidence            5566677778889999999632 333 3578999999999999999999995555544 899999999999999999999


Q ss_pred             CCCeEec
Q psy5020         110 DGIKLVN  116 (120)
Q Consensus       110 ~gi~lvn  116 (120)
                      .|++-+.
T Consensus        96 ygv~~~d  102 (193)
T KOG2046|consen   96 YGVPEVD  102 (193)
T ss_pred             cCCChhh
Confidence            9987543

>KOG3631|consensus

Probab=98.97  E-value=1.9e-09  Score=85.80  Aligned_cols=83  Identities=23%  Similarity=0.434  Sum_probs=76.8

Q ss_pred             chhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCcHHHHHhhHHHHHHHHH
Q psy5020          31 HEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTNQHQFLENVTCALNAIN  108 (120)
Q Consensus        31 ~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~r~qkieNv~~aL~flk  108 (120)
                      .+++-....+++..++||.||.+.+..|++|.+.|.|||.|..|+..|.|..+|  .|+-.|.+.-+++.||+.|+++|+
T Consensus       250 ~aPdKln~VK~sli~FvNkhLnklnLeVt~LdtQFaDGV~LvLL~GlLEgyFvpL~~F~Ltp~S~eekv~NVsfAfeLm~  329 (365)
T KOG3631|consen  250 HAPDKLNVVKKSLITFVNKHLNKLNLEVTELDTQFADGVYLVLLMGLLEGYFVPLHHFYLTPNSFEEKVHNVSFAFELMK  329 (365)
T ss_pred             hCcHHHHHHHHHHHHHHHHHhhhccceeehhhhhhccchHHHHHHHhhccceeecceeecCCCCHHHHHHHHHHHHHHHH
Confidence            566778889999999999999999999999999999999999999999999876  578899999999999999999999


Q ss_pred             hCCCe
Q psy5020         109 EDGIK  113 (120)
Q Consensus       109 ~~gi~  113 (120)
                      +.|..
T Consensus       330 D~GL~  334 (365)
T KOG3631|consen  330 DGGLE  334 (365)
T ss_pred             ccCcC
Confidence            98764

>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

Probab=98.34  E-value=8.7e-07  Score=75.21  Aligned_cols=89  Identities=22%  Similarity=0.274  Sum_probs=70.2

Q ss_pred             ccchhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHc-Cccc--ccccCCC-----CcHHHHHhhH
Q psy5020          29 KGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQ-KRKL--KFWIRKP-----TNQHQFLENV  100 (120)
Q Consensus        29 ~~~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Ls-g~~i--~~~~~~p-----~~r~qkieNv  100 (120)
                      ..++.+.+. ..+.||-|.|++  ....+|+|++.|+|||..+.+.++... +-++  +..++.|     .+||+.++|+
T Consensus       371 ~e~d~e~ef-ear~~Tf~l~~~--~vsp~i~~l~gd~Rdql~~lq~l~k~l~p~tv~~~~vk~~~asG~E~~rfka~en~  447 (612)
T COG5069         371 EEFDAEGEF-EARVFTFWLNSL--DVSPEITNLFGDLRDQLILLQALSKKLMPMTVTHKLVKKQPASGIEENRFKAFENE  447 (612)
T ss_pred             CCcchhhHH-HHHHHHHHHHHh--cCChhhhhhcccHHHHHHHHHHHHhhcCCceechhhhcccccccchhhhhhhhccc
Confidence            334444333 678999999996  466789999999999999999998776 4343  2333444     4799999999


Q ss_pred             HHHHHHHHhCCCeEeccCCC
Q psy5020         101 TCALNAINEDGIKLVNIDYL  120 (120)
Q Consensus       101 ~~aL~flk~~gi~lvnI~~~  120 (120)
                      ++|.+|....|+.+++|.++
T Consensus       448 nyavdlG~~~gf~~v~ik~l  467 (612)
T COG5069         448 NYAVDLGITEGFSLVGIKGL  467 (612)
T ss_pred             chhhhhhhhcCeeeeeechh
Confidence            99999999999999999763

>COG5199 SCP1 Calponin [Cytoskeleton]

Probab=98.33  E-value=1.2e-06  Score=64.44  Aligned_cols=76  Identities=20%  Similarity=0.334  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhCCCe
Q psy5020          36 VDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIK  113 (120)
Q Consensus        36 ~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~gi~  113 (120)
                      ...|.+..+-||...|.+.--+-.||.+-|+||++||..+...++..+. | +..++.|-+|||++..++|+++.++.
T Consensus        11 ~~~~~kev~~Wie~~l~~k~~ppgdll~~lkdGv~lCril~ea~~~~I~-y-KeSkmpFVQmenIs~Fin~~~k~~vp   86 (178)
T COG5199          11 MDKQQKEVTLWIETVLGEKFEPPGDLLSLLKDGVRLCRILNEASPLDIK-Y-KESKMPFVQMENISSFINGLKKLRVP   86 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhhhCCcccHHHHHhcchHHHHHHhhcCcccce-e-cccCCceeeHHHHHHHHHHHHHhCCC
Confidence            4567888999999988765446689999999999999999988887764 3 56899999999999999999998764

>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins

Probab=97.95  E-value=9.1e-06  Score=54.29  Aligned_cols=68  Identities=29%  Similarity=0.374  Sum_probs=53.1

Q ss_pred             HHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCccccc--ccC-CCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020          46 WVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKF--WIR-KPTNQHQFLENVTCALNAINE-DGIK  113 (120)
Q Consensus        46 WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~--~~~-~p~~r~qkieNv~~aL~flk~-~gi~  113 (120)
                      |++..-.-....|.|+..||+||..||.|+.-+-++.++.  +.. .+.+.+.++.|+....+|+.+ .|.+
T Consensus         1 ~~~~~~~~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~l~~~   72 (85)
T PF11971_consen    1 WVNARCAPYFPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSHLGFS   72 (85)
T ss_pred             CCCcccCCCCcchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHHcCCC
Confidence            4444433344689999999999999999999999998864  433 344689999999999999987 3544

>KOG0532|consensus

Probab=96.92  E-value=0.0031  Score=55.31  Aligned_cols=88  Identities=23%  Similarity=0.266  Sum_probs=60.1

Q ss_pred             cccccccchhhHHHHHHHH-HHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccC----CCC-cHHHHH
Q psy5020          24 KGMQIKGHEDIWVDIQTHT-FKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIR----KPT-NQHQFL   97 (120)
Q Consensus        24 ~~~~~~~~~~~w~~~Q~kt-ft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~----~p~-~r~qki   97 (120)
                      +.++-+...+..++....+ .++-|...| ++..++ ||...|.|||+||+|.+.+-+.+++.++-    -|+ +-.++-
T Consensus       561 ~tir~r~~~q~~eE~eL~~QLRk~iEtRL-k~sLp~-Dl~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcr  638 (722)
T KOG0532|consen  561 FTIRPRTGIQNREEKELMLQLRKLIETRL-KVSLPE-DLAAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCR  638 (722)
T ss_pred             ceecccccccchHHHHHHHHHHHHHHHHh-cccCch-hHHHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHH
Confidence            3344333333444433333 444556655 444454 89999999999999999999987765432    122 357788


Q ss_pred             hhHHHHHHHHHhCCCe
Q psy5020          98 ENVTCALNAINEDGIK  113 (120)
Q Consensus        98 eNv~~aL~flk~~gi~  113 (120)
                      -||..+|++|++.||.
T Consensus       639 rNVdnFLeaCRkiGVp  654 (722)
T KOG0532|consen  639 RNVDNFLEACRKIGVP  654 (722)
T ss_pred             HhHHHHHHHHHHcCCC
Confidence            9999999999999985

>KOG0516|consensus

Probab=96.92  E-value=0.00025  Score=64.94  Aligned_cols=80  Identities=34%  Similarity=0.394  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCccc---ccccCCCCcHHHHHhhHHHHHHHHHhCCC
Q psy5020          36 VDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL---KFWIRKPTNQHQFLENVTCALNAINEDGI  112 (120)
Q Consensus        36 ~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i---~~~~~~p~~r~qkieNv~~aL~flk~~gi  112 (120)
                      ..+|+++|+.|++.++.+.-.+|++++.+|++ ...+.+++...+...   ......+..+++.++|+..++.++++..+
T Consensus        72 ~~~~k~~f~~~~~~~l~~~~~~ve~~~~~l~~-~~~i~~l~~~e~~~~~~~~~~~~~~~~~~~~l~n~q~~l~~~k~~~~  150 (1047)
T KOG0516|consen   72 DLVQKKLFPDWLAKELEKVMKHVEDLYEDLRD-LNSISLLEVEELLVAVRKQEPEQDRQERLHDLENVQAALTALKEDLA  150 (1047)
T ss_pred             HHHHHhccchhhHHHHHHhccchhHHhhhhhh-hhHHHHHHHHHhhhhhhhhhHHHHHHHHHhhHHHHHhhhccchHHHH
Confidence            57899999999999999888899999999995 445555554444322   22223566789999999999999999888


Q ss_pred             eEec
Q psy5020         113 KLVN  116 (120)
Q Consensus       113 ~lvn  116 (120)
                      .+++
T Consensus       151 el~~  154 (1047)
T KOG0516|consen  151 ELVN  154 (1047)
T ss_pred             HHHH
Confidence            8877

>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function

Probab=96.80  E-value=0.0023  Score=47.05  Aligned_cols=68  Identities=18%  Similarity=0.322  Sum_probs=47.9

Q ss_pred             HHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCcHHHHHhhHHHH-HHHHHhCCCeE
Q psy5020          44 KNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTNQHQFLENVTCA-LNAINEDGIKL  114 (120)
Q Consensus        44 t~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~r~qkieNv~~a-L~flk~~gi~l  114 (120)
                      .+|+++ | ....+..++..||.||+.+.+++...-++.+.  .| .++.+...++.|++.. -.+++..|+++
T Consensus         2 ~~WL~~-l-~ls~~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y-~~~~s~~~Kl~NW~~Ln~kvl~kl~~~l   72 (158)
T PF06294_consen    2 LKWLQS-L-DLSRPPKNIRRDFSDGYLVAEILSRYYPKLVDLHNY-SNGNSVAQKLNNWETLNEKVLKKLGIKL   72 (158)
T ss_dssp             HHHHHH-S---S--SS-HHHHHTTSHHHHHHHHHH-TTT---SS-----SSHHHHHHHHHHHHHHTTGGGT---
T ss_pred             hHHHhc-C-CCCCCCCchHHHcccccHHHHHHHHHCCCCcccccc-CCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            479999 4 34467889999999999999999999988654  34 4678899999999999 99999999876

; PDB: 2EE7_A.

>KOG2996|consensus

Probab=96.72  E-value=0.0017  Score=56.92  Aligned_cols=54  Identities=31%  Similarity=0.349  Sum_probs=47.1

Q ss_pred             CcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCc-HHHHHhhHHHHHHHHHh
Q psy5020          56 LHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTN-QHQFLENVTCALNAINE  109 (120)
Q Consensus        56 ~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~-r~qkieNv~~aL~flk~  109 (120)
                      ..|-||.+.|+|||.||+|++.|.+.++.  .++.+|.+ .|-++.|+...|.|+.+
T Consensus        28 a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~C~~   84 (865)
T KOG2996|consen   28 AQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMFCCE   84 (865)
T ss_pred             chHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHHHHH
Confidence            35788999999999999999999998874  46667764 89999999999999987

>KOG0518|consensus

Probab=96.45  E-value=4.9e-05  Score=69.17  Aligned_cols=89  Identities=26%  Similarity=0.135  Sum_probs=76.2

Q ss_pred             cchhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh
Q psy5020          30 GHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE  109 (120)
Q Consensus        30 ~~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~  109 (120)
                      +..++|..++-..+|.|+-.+....|..+-+|..|+.||+.|+.++++++.....+++...-. +|+.+|++.|+.+...
T Consensus        18 g~~ae~~i~~~~~~T~~~t~~~~~aG~~~~slk~~~~dg~~~p~~v~vl~~~~~skv~~~~p~-~q~~~~v~~a~~~ft~   96 (1113)
T KOG0518|consen   18 GIVAEVKIQDNLDGTVTVTYDPQRAGFYILSLKYDGSDGVNLPSLVQVLSAVDTSKVKKKGPG-IQGLHNVREALNKFTV   96 (1113)
T ss_pred             CcceeeEEEecCCceEEEEEccccCcceeEEEEecCccccccceeeEEeeccccceeEEecCC-ccCcchhhhhhhhhhh
Confidence            677888888888888888777777888899999999999999999999998877664443333 8999999999999999


Q ss_pred             CCCeEeccCC
Q psy5020         110 DGIKLVNIDY  119 (120)
Q Consensus       110 ~gi~lvnI~~  119 (120)
                      .+..++||++
T Consensus        97 d~r~~~nigs  106 (1113)
T KOG0518|consen   97 DNRKETNIGS  106 (1113)
T ss_pred             ccceeeccCC
Confidence            8899999986

>KOG3631|consensus

Probab=96.30  E-value=0.014  Score=47.09  Aligned_cols=53  Identities=28%  Similarity=0.468  Sum_probs=44.2

Q ss_pred             chhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc
Q psy5020          31 HEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK   84 (120)
Q Consensus        31 ~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~   84 (120)
                      .++..++. .+.+..|||..|....+-|.+|.+||-||.+|-.|+|.|.+.++.
T Consensus        84 ~DpK~~el-~kvLi~WiN~~L~~erIvVr~LeEDlfDGqilqkL~ekL~~~kle  136 (365)
T KOG3631|consen   84 KDPKFEEL-VKVLIDWINDVLVPERIVVRSLEEDLFDGQILQKLFEKLAALKLE  136 (365)
T ss_pred             cChhHHHH-HHHHHHHHHHhhcchhhhHHhhHHhhhhhHHHHHHHHHHHhhhcc
Confidence            34444443 468999999999877788999999999999999999999998764

>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]

Probab=94.82  E-value=0.085  Score=48.10  Aligned_cols=101  Identities=16%  Similarity=0.223  Sum_probs=72.1

Q ss_pred             hhhhhccccCCCCcccccccccccchhhHHHHHHHH-------HHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHc
Q psy5020           7 RLSQIGMKARSPEGHAAKGMQIKGHEDIWVDIQTHT-------FKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQ   79 (120)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~Q~kt-------ft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Ls   79 (120)
                      --++.|-+..+|-..-+.+|     +.+....+...       ...||...+... .+-.-+.+.||+||.|..|.+.+.
T Consensus        11 ~~~n~grpigt~~h~~t~~~-----ak~r~~lraYeyLCRv~EaK~WIee~~~~~-l~~~~fe~slRnGV~La~l~q~f~   84 (1054)
T COG5261          11 YVENLGRPIGTPSHLKTKTS-----AKNRSALRAYEYLCRVSEAKIWIEEVIEEA-LPELCFEDSLRNGVFLAKLTQRFN   84 (1054)
T ss_pred             HHHhcCCCCCCccccchhhh-----hhhhHHHHHHHHHHhHHHHHHHHHHHhccC-CchhhHHHHHhccchHHHHHHHhC
Confidence            34567755444443333333     34445555433       468999987543 444556778999999999999999


Q ss_pred             CcccccccCCCCcHHHHHhhHHHHHHHHHhCCCe
Q psy5020          80 KRKLKFWIRKPTNQHQFLENVTCALNAINEDGIK  113 (120)
Q Consensus        80 g~~i~~~~~~p~~r~qkieNv~~aL~flk~~gi~  113 (120)
                      +..+..+...-++.|.+-+|+|+.|+++..-|+.
T Consensus        85 pd~~~~iF~~~~LQfrHtdNIN~Fld~i~~vGlP  118 (1054)
T COG5261          85 PDLTTVIFPADKLQFRHTDNINAFLDLIEHVGLP  118 (1054)
T ss_pred             CCceeEeeecccceeeccccHHHHHhHhhhcCCc
Confidence            9988765445788999999999999999987763

>KOG2128|consensus

Probab=94.08  E-value=0.097  Score=49.58  Aligned_cols=71  Identities=18%  Similarity=0.278  Sum_probs=59.4

Q ss_pred             HHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc-cccCCCCcHHHHHhhHHHHHHHHHhCCCe
Q psy5020          42 TFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK-FWIRKPTNQHQFLENVTCALNAINEDGIK  113 (120)
Q Consensus        42 tft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~-~~~~~p~~r~qkieNv~~aL~flk~~gi~  113 (120)
                      .-.+||..-|+..=.+-++|.+.||+||.|..|-+..++..-. +|..+... |.+-+|++..+++|..-|+.
T Consensus        46 E~k~W~e~cl~edL~pttele~~LRNGV~LAkL~~~f~PD~~~~~~~~~~~~-frHtdNi~q~~~~me~iglP  117 (1401)
T KOG2128|consen   46 EAKRWIEECLGEDLPPTTELEEGLRNGVYLAKLGQFFAPDLEQTIYKANDLH-FRHTDNINQWLRAMESIGLP  117 (1401)
T ss_pred             HHHHHHHHHhcccCCCchHHHHHhhhhhHHHHHHhhcCCcceeeeeecCCce-eecchhHHHHHHHHhhcCCC
Confidence            3579999988766457899999999999999999999997544 46555554 99999999999999987764

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=93.11  E-value=0.17  Score=44.85  Aligned_cols=68  Identities=16%  Similarity=0.268  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc-----cccCCC-CcHHHHHhhHHHHHHHHHh
Q psy5020          39 QTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK-----FWIRKP-TNQHQFLENVTCALNAINE  109 (120)
Q Consensus        39 Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~-----~~~~~p-~~r~qkieNv~~aL~flk~  109 (120)
                      -..++..|||+ +. .+.++.+ ++||.||+.|..+|..|.+..+.     ++...+ ....-++.|+...++-+..
T Consensus         8 l~~~Lv~Wv~t-f~-~~~~~~~-~~dL~DGv~L~evL~qIDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~~   81 (713)
T PF05622_consen    8 LCDSLVTWVQT-FN-LSAPCSS-YEDLSDGVALAEVLHQIDPEYFNDSWLSRIKEDVGDNWRLRVSNLKKLLRNIKS   81 (713)
T ss_dssp             HHHHHHHHHTT-----SS---S-HHHHTTSHHHHHHHHHH-TTTS-HHHHTT--SGGGG-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-CC-CCCCcCC-HHHccchHHHHHHHHHhCccccCcHHhhcCCCCCCccHHHHHHHHHHHHHHHHH
Confidence            45689999999 43 4445644 78999999999999999998654     222222 2345588999888887776

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	120
4b7l_A	347	Crystal Structure Of Human Filamin B Actin Binding		3e-15
2wa6_A	245	Structure Of The W148r Mutant Of Human Filamin B Ac		1e-14
3fer_A	262	Crystal Structure Of N-Terminal Actin-Binding Domai		2e-14
2wa7_A	245	Structure Of The M202v Mutant Of Human Filamin B Ac		2e-14
2wa5_A	245	Crystal Structure Of Human Filamin B Actin Binding		2e-14
2wfn_A	278	Filamin A Actin Binding Domain Length = 278		7e-14
3hop_A	272	Structure Of The Actin-Binding Domain Of Human Fila		8e-14
3hoc_A	272	Structure Of The Actin-Binding Domain Of Human Fila		9e-14
1sjj_A	863	Cryo-Em Structure Of Chicken Gizzard Smooth Muscle		1e-08
2r0o_A	237	Crystal Structure Of The Actin-Binding Domain Of Hu		2e-08
2eyi_A	234	Crystal Structure Of The Actin-Binding Domain Of Hu		2e-08
3f7p_A	296	Crystal Structure Of A Complex Between Integrin Bet		4e-08
3lue_K	109	Model Of Alpha-Actinin Ch1 Bound To F-Actin Length		9e-08
1tjt_A	250	X-Ray Structure Of The Human Alpha-Actinin Isoform		1e-07
1wku_A	254	High Resolution Structure Of The Human Alpha-Actini		1e-07
1dxx_A	246	N-Terminal Actin-Binding Domain Of Human Dystrophin		1e-06
1sh5_A	245	Crystal Structure Of Actin-Binding Domain Of Mouse		2e-06
1mb8_A	243	Crystal Structure Of The Actin Binding Domain Of Pl		2e-06
2yrn_A	129	Solution Structure Of The Ch Domain From Human Neur		6e-05
1qag_A	226	Actin Binding Region Of The Dystrophin Homologue Ut		6e-04

>pdb|4B7L|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain With 1st Filamin Repeat Length = 347

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 35  WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEIL-QKRKLKFWIRKPTNQ 93
           W  IQ +TF  W NEHLKSV   + +L  DL+DG +L AL+E+L QKR  + + ++PT +
Sbjct: 14  WKKIQQNTFTRWCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFR 73
Query: 94  HQFLENVTCALNAINEDGIKLVNID 118
              LENV+ AL  ++ + IKLV+ID
Sbjct: 74  QMQLENVSVALEFLDRESIKLVSID 98

>pdb|2WA6|A Chain A, Structure Of The W148r Mutant Of Human Filamin B Actin Binding Domain At 1.95 Angstroms Resolution Length = 245

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 35  WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEIL-QKRKLKFWIRKPTNQ 93
           W  IQ +TF  W NEHLK V   + +L  DL+DG +L AL+E+L QKR  + + ++PT +
Sbjct: 17  WKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFR 76
Query: 94  HQFLENVTCALNAINEDGIKLVNID 118
              LENV+ AL  ++ + IKLV+ID
Sbjct: 77  QMQLENVSVALEFLDRESIKLVSID 101

>pdb|3FER|A Chain A, Crystal Structure Of N-Terminal Actin-Binding Domain From Human Filamin B (Tandem Ch-Domains). Northeast Structural Genomics Consortium Target Hr5571a. Length = 262

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 35  WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEIL-QKRKLKFWIRKPTNQ 93
           W  IQ +TF  W NEHLK V   + +L  DL+DG +L AL+E+L QKR  + + ++PT +
Sbjct: 24  WKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRXYRKYHQRPTFR 83
Query: 94  HQFLENVTCALNAINEDGIKLVNID 118
              LENV+ AL  ++ + IKLV+ID
Sbjct: 84  QXQLENVSVALEFLDRESIKLVSID 108

>pdb|2WA7|A Chain A, Structure Of The M202v Mutant Of Human Filamin B Actin Binding Domain At 1.85 Angstroms Resolution Length = 245

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 35  WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEIL-QKRKLKFWIRKPTNQ 93
           W  IQ +TF  W NEHLK V   + +L  DL+DG +L AL+E+L QKR  + + ++PT +
Sbjct: 17  WKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFR 76
Query: 94  HQFLENVTCALNAINEDGIKLVNID 118
              LENV+ AL  ++ + IKLV+ID
Sbjct: 77  QMQLENVSVALEFLDRESIKLVSID 101

>pdb|2WA5|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain At 1.9 Angstroms Resolution Length = 245

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 35  WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEIL-QKRKLKFWIRKPTNQ 93
           W  IQ +TF  W NEHLK V   + +L  DL+DG +L AL+E+L QKR  + + ++PT +
Sbjct: 17  WKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFR 76
Query: 94  HQFLENVTCALNAINEDGIKLVNID 118
              LENV+ AL  ++ + IKLV+ID
Sbjct: 77  QMQLENVSVALEFLDRESIKLVSID 101

>pdb|2WFN|A Chain A, Filamin A Actin Binding Domain Length = 278

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 35  WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL-KFWIRKPTNQ 93
           W  IQ +TF  W NEHLK V   + +L  DL+DG +L AL+E+L ++K+ +   ++PT +
Sbjct: 41  WKKIQQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFR 100
Query: 94  HQFLENVTCALNAINEDGIKLVNID 118
              LENV+ AL  ++ + IKLV+ID
Sbjct: 101 QMQLENVSVALEFLDRESIKLVSID 125

>pdb|3HOP|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A Length = 272

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 35  WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL-KFWIRKPTNQ 93
           W  IQ +TF  W NEHLK V   + +L  DL+DG +L AL+E+L ++K+ +   ++PT +
Sbjct: 44  WKKIQQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFR 103
Query: 94  HQFLENVTCALNAINEDGIKLVNID 118
              LENV+ AL  ++ + IKLV+ID
Sbjct: 104 QMQLENVSVALEFLDRESIKLVSID 128

>pdb|3HOC|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A Mutant E254k Length = 272

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 35  WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL-KFWIRKPTNQ 93
           W  IQ +TF  W NEHLK V   + +L  DL+DG +L AL+E+L ++K+ +   ++PT +
Sbjct: 44  WKKIQQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFR 103
Query: 94  HQFLENVTCALNAINEDGIKLVNID 118
              LENV+ AL  ++ + IKLV+ID
Sbjct: 104 QMQLENVSVALEFLDRESIKLVSID 128

>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha- Actinin Length = 863

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 35  WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQH 94
           W   Q  TF  W N HL+  G  +E++ +D  DG KL  L+E++   +L    R     H
Sbjct: 5   WEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVH 64
Query: 95  QFLENVTCALNAINEDGIKLVNI 117
           + + NV  AL+ I   G+KLV+I
Sbjct: 65  K-ISNVNKALDFIASKGVKLVSI 86

>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human Alpha-Actinin-4 Mutant(K255e) Length = 237

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 32  EDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPT 91
           E  W   Q  TF  W N HL+  G  +E++ +D  DG KL  L+E++   +L    R   
Sbjct: 6   EFAWEKQQRKTFTAWCNSHLRKAGTQIENIDEDFRDGLKLMLLLEVISGERLPKPERGKM 65
Query: 92  NQHQFLENVTCALNAINEDGIKLVNI 117
             H+ + NV  AL+ I   G+KLV+I
Sbjct: 66  RVHK-INNVNKALDFIASKGVKLVSI 90

>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human Alpha-Actinin 1 At 1.7 Angstrom Resolution Length = 234

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 39  QTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLE 98
           Q  TF  W N HL+  G  +E++ +D  DG KL  L+E++   +L    R     H+ + 
Sbjct: 8   QRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHK-IS 66
Query: 99  NVTCALNAINEDGIKLVNI 117
           NV  AL+ I   G+KLV+I
Sbjct: 67  NVNKALDFIASKGVKLVSI 85

>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And Plectin Length = 296

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 38  IQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQF- 96
           +Q  TF  WVN+HL     H+ DL +DL DG  L +L+E+L    L     +   + +F 
Sbjct: 73  VQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLP----REKGRMRFH 128
Query: 97  -LENVTCALNAINEDGIKLVNI 117
            L+NV  AL+ +    +KLVNI
Sbjct: 129 KLQNVQIALDYLRHRQVKLVNI 150

>pdb|3LUE|K Chain K, Model Of Alpha-Actinin Ch1 Bound To F-Actin Length = 109

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 35  WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQH 94
           W   Q  TF  W N HL+  G  +E++ +D  +G KL  L+E++   +L    R    + 
Sbjct: 2   WEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLP---RPDKGKM 58
Query: 95  QF--LENVTCALNAINEDGIKLVNI 117
           +F  + NV  AL+ I   G+KLV+I
Sbjct: 59  RFHKIANVNKALDFIASKGVKLVSI 83

>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At 2.2a Resolution Length = 250

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 35  WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQH 94
           W   Q  TF  W N HL+  G  +E++ +D  +G KL  L+E++   +L    R    + 
Sbjct: 20  WEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLP---RPDKGKM 76
Query: 95  QF--LENVTCALNAINEDGIKLVNI 117
           +F  + NV  AL+ I   G+KLV+I
Sbjct: 77  RFHKIANVNKALDFIASKGVKLVSI 101

>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin Isoform 3 Length = 254

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 35  WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQH 94
           W   Q  TF  W N HL+  G  +E++ +D  +G KL  L+E++   +L    R    + 
Sbjct: 24  WEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLP---RPDKGKM 80
Query: 95  QF--LENVTCALNAINEDGIKLVNI 117
           +F  + NV  AL+ I   G+KLV+I
Sbjct: 81  RFHKIANVNKALDFIASKGVKLVSI 105

>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin Length = 246

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 37  DIQTHTFKNWVNEHLKSVG-LHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQ 95
           D+Q  TF  WVN      G  H+E+L  DL DG +L  L+E L  +KL     K + +  
Sbjct: 15  DVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLP--KEKGSTRVH 72
Query: 96  FLENVTCALNAINEDGIKLVNI 117
            L NV  AL  +  + + LVNI
Sbjct: 73  ALNNVNKALRVLQNNNVDLVNI 94

>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin Length = 245

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 38  IQTHTFKNWVNEHL-----KSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTN 92
           +Q  TF  WVN+HL          H+ DL +DL DG  L +L+E+L    L     +   
Sbjct: 12  VQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLP----REKG 67
Query: 93  QHQF--LENVTCALNAINEDGIKLVNI 117
           + +F  L+NV  AL+ +    +KLVNI
Sbjct: 68  RMRFHKLQNVQIALDYLRHRQVKLVNI 94

>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin Length = 243

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 38  IQTHTFKNWVNEHL-----KSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTN 92
           +Q  TF  WVN+HL          H+ DL +DL DG  L +L+E+L    L     K   
Sbjct: 15  VQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR--EKGRM 72
Query: 93  QHQFLENVTCALNAINEDGIKLVNI 117
           +   L+NV  AL+ +    +KLVNI
Sbjct: 73  RFHKLQNVQIALDYLRHRQVKLVNI 97

>pdb|2YRN|A Chain A, Solution Structure Of The Ch Domain From Human Neuron Navigator 2 Length = 129

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 28  IKGHEDIWVDIQTHTFKNWVNEHLKSVGLH--VEDLAKDLADGTKLCALVEILQKRKLKF 85
           I G ED     Q   + +W N +L   G    + DL +D+ DG  L  +++++   K++ 
Sbjct: 13  IHGLED-----QKRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIED 67
Query: 86  WIRKPTNQHQFLENVTCALNAINEDGIKL 114
               P N+ Q +EN+   LN +   GI +
Sbjct: 68  INGCPKNRSQMIENIDACLNFLAAKGINI 96

>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin Length = 226

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 37  DIQTHTFKNWVNEHLKSVG-LHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQ 95
           D+Q  TF  W+N      G   + D   DL DG KL  L+E L    L    R  T  H 
Sbjct: 1   DVQKKTFTKWINARFSKSGKPPINDXFTDLKDGRKLLDLLEGLTGTSLPK-ERGSTRVHA 59
Query: 96  FLENVTCALNAINEDGIKLVNI 117
            L NV   L  ++++ ++LVNI
Sbjct: 60  -LNNVNRVLQVLHQNNVELVNI 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	120
2yrn_A	129	Neuron navigator 2 isoform 4; calponin homolgy dom	1e-26
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	3e-26
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	5e-26
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	2e-25
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	6e-24
2vzc_A	131	Alpha-parvin; membrane, cytoplasm, cytoskeleton, c	9e-24
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	4e-23
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	8e-23
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	9e-22
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	4e-12
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	3e-20
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	3e-20
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	2e-16
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	6e-12
1p5s_A	203	RAS GTPase-activating-like protein RNG2; alpha-hel	2e-06
1p2x_A	159	RNG2 protein, RAS GTPase-activating-like protein;	4e-06
1h67_A	108	Calponin alpha; cytoskeleton, calponin homology do	7e-05
1ujo_A	144	Transgelin; CH domain, actin binding, structural g	1e-04
2rr8_A	190	Iqgap1 protein; F-actin binding protein, protein b	4e-04

>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129

 Score = 94.9 bits (236), Expect = 1e-26
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 35  WVDIQTHTFKNWVNEHLKSVGL--HVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTN 92
            ++ Q   + +W N +L   G    + DL +D+ DG  L  +++++   K++     P N
Sbjct: 15  GLEDQKRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKN 74

Query: 93  QHQFLENVTCALNAINEDGIKLVNID 118
           + Q +EN+   LN +   GI +  + 
Sbjct: 75  RSQMIENIDACLNFLAAKGINIQGLS 100

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Length = 254

 Score = 97.3 bits (242), Expect = 3e-26
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 32  EDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPT 91
           +  W   Q  TF  W N HL+  G  +E++ +D  +G KL  L+E++   +L     K  
Sbjct: 21  DPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLP-RPDKGK 79

Query: 92  NQHQFLENVTCALNAINEDGIKLVNID 118
            +   + NV  AL+ I   G+KLV+I 
Sbjct: 80  MRFHKIANVNKALDFIASKGVKLVSIG 106

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Length = 275

 Score = 97.3 bits (242), Expect = 5e-26
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 15/115 (13%)

Query: 19  EGHAAKG----MQIKGHEDIWVDIQTHTFKNWVNEHLK---------SVGLHVEDLAKDL 65
           EG  A G    +  +G +  + + + + F NW+N+ L+          +  + +DL K +
Sbjct: 1   EGICALGGTSELSSEGTQHSYSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAV 60

Query: 66  ADGTKLCALVEILQKRKL--KFWIRKPTNQHQFLENVTCALNAINEDGIKLVNID 118
            DG  LC ++ +     +  +   +K        EN+  ALN+ +  G  +VNI 
Sbjct: 61  GDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSASAIGCHVVNIG 115

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Length = 296

 Score = 96.0 bits (238), Expect = 2e-25
 Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 9/118 (7%)

Query: 8   LSQIGMKARSPEGHAAKGMQIKGHE-------DIWVDIQTHTFKNWVNEHLKSVGLHVED 60
           L +     RS  G  + G  +   E       D    +Q  TF  WVN+HL     H+ D
Sbjct: 36  LGKTQRSRRSGGGAGSNGSVLDPAERAVIRIADERDRVQKKTFTKWVNKHLIKAQRHISD 95

Query: 61  LAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIKLVNID 118
           L +DL DG  L +L+E+L    L     K   +   L+NV  AL+ +    +KLVNI 
Sbjct: 96  LYEDLRDGHNLISLLEVLSGDSLP--REKGRMRFHKLQNVQIALDYLRHRQVKLVNIR 151

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Length = 245

 Score = 91.2 bits (226), Expect = 6e-24
 Identities = 36/88 (40%), Positives = 58/88 (65%), Gaps = 1/88 (1%)

Query: 32  EDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL-KFWIRKP 90
           +  W  IQ +TF  W NEHLK V   + +L  DL+DG +L AL+E+L ++++ + + ++P
Sbjct: 14  DAPWKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRP 73

Query: 91  TNQHQFLENVTCALNAINEDGIKLVNID 118
           T +   LENV+ AL  ++ + IKLV+ID
Sbjct: 74  TFRQMQLENVSVALEFLDRESIKLVSID 101

>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Length = 131

 Score = 87.6 bits (217), Expect = 9e-24
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 35  WVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKF--WIRKPTN 92
            +++   T   +VN+HL  + L V +L    ADG  L  L+ +L+   +    +   P +
Sbjct: 19  KLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDS 78

Query: 93  QHQFLENVTCALNAINEDGIKLVNID 118
             Q + NV+ A   + + G++     
Sbjct: 79  FEQKVLNVSFAFELMQDGGLEKPKPR 104

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A 2wfn_A Length = 272

 Score = 89.7 bits (222), Expect = 4e-23
 Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 1/103 (0%)

Query: 17  SPEGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVE 76
           + +       +    +  W  IQ +TF  W NEHLK V   + +L  DL+DG +L AL+E
Sbjct: 26  TRDAEMPATEKDLAEDAPWKKIQQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLE 85

Query: 77  ILQKRKLKF-WIRKPTNQHQFLENVTCALNAINEDGIKLVNID 118
           +L ++K+     ++PT +   LENV+ AL  ++ + IKLV+ID
Sbjct: 86  VLSQKKMHRKHNQRPTFRQMQLENVSVALEFLDRESIKLVSID 128

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 91.1 bits (225), Expect = 8e-23
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 32  EDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPT 91
           +  W   Q  TF  W N HL+  G  +E++ +D  DG KL  L+E++   +L     +  
Sbjct: 2   DPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKP-ERGK 60

Query: 92  NQHQFLENVTCALNAINEDGIKLVNID 118
            +   + NV  AL+ I   G+KLV+I 
Sbjct: 61  MRVHKISNVNKALDFIASKGVKLVSIG 87

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506

 Score = 87.8 bits (217), Expect = 9e-22
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 12/96 (12%)

Query: 35  WVDIQTHTFKNWVNEHLKS---------VGLHVEDLAKDLADGTKLCALVEILQKRKL-- 83
            +  +   F   +N +L           +  H   L + + DG  LC L+ +     +  
Sbjct: 4   GIQSEKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDE 63

Query: 84  -KFWIRKPTNQHQFLENVTCALNAINEDGIKLVNID 118
                ++  N  +  EN T  LN+    G  +VNI 
Sbjct: 64  RAINTKRVLNPWERNENHTLCLNSAKAVGCSVVNIG 99

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506

 Score = 60.5 bits (146), Expect = 4e-12
 Identities = 13/91 (14%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 31  HEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL---KFWI 87
            ED+        ++ W+N     +  +V ++ +D+ +G  L  +++ +    +       
Sbjct: 269 TEDVETCRDERCYRLWINSLG--IDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASK 326

Query: 88  RKPTNQHQFLENVTCALNAINEDGIKLVNID 118
                  + +EN    +    +    LVN+ 
Sbjct: 327 PPIKMPFRKVENCNQVIKIGKQLKFSLVNVA 357

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Length = 246

 Score = 81.6 bits (201), Expect = 3e-20
 Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 32  EDIWVDIQTHTFKNWVNEHLKSVGL-HVEDLAKDLADGTKLCALVEILQKRKLKFWIRKP 90
                D+Q  TF  WVN      G  H+E+L  DL DG +L  L+E L  +KL     K 
Sbjct: 10  SYEREDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKE--KG 67

Query: 91  TNQHQFLENVTCALNAINEDGIKLVNID 118
           + +   L NV  AL  +  + + LVNI 
Sbjct: 68  STRVHALNNVNKALRVLQNNNVDLVNIG 95

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Length = 245

 Score = 81.6 bits (201), Expect = 3e-20
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 7/92 (7%)

Query: 32  EDIWVDIQTHTFKNWVNEHL-----KSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFW 86
            D    +Q  TF  WVN+HL          H+ DL +DL DG  L +L+E+L    L   
Sbjct: 6   FDERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSL--P 63

Query: 87  IRKPTNQHQFLENVTCALNAINEDGIKLVNID 118
             K   +   L+NV  AL+ +    +KLVNI 
Sbjct: 64  REKGRMRFHKLQNVQIALDYLRHRQVKLVNIR 95

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513

 Score = 72.8 bits (178), Expect = 2e-16
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 16/100 (16%)

Query: 35  WVDIQTHTFKNWVNEHLKS---------VGLHVEDLAKDLADGTKLCALVEIL------Q 79
             + +   F   +N  L           +     +      DG  L  L+         +
Sbjct: 9   INEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDE 68

Query: 80  KRKLKFWIRKPTNQHQFLENVTCALNAINEDG-IKLVNID 118
           +   K    KP +  + +EN    +N+    G I + NI 
Sbjct: 69  RVLNKQRNNKPLDNFKCIENNNVVINSAKAMGGISITNIG 108

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513

 Score = 60.1 bits (145), Expect = 6e-12
 Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 9/123 (7%)

Query: 3   SDELRLSQIGMKARSPEGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLA 62
            +   ++ +       E    +        D   + +   F  W+N     V   + D  
Sbjct: 250 LNLAFVAHLFNTHPGLEPLNEEEKPEIEPFDAEGEREARVFTLWLNSLD--VTPSIHDFF 307

Query: 63  KDLADGTKLCALVEILQKRKLKF-------WIRKPTNQHQFLENVTCALNAINEDGIKLV 115
            +L DG  L    + +    + +              + + +EN   A++     G  LV
Sbjct: 308 NNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQGFSLV 367

Query: 116 NID 118
            I 
Sbjct: 368 GIQ 370

>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 203

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 17/74 (22%), Positives = 29/74 (39%)

Query: 44  KNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCA 103
           K W+ E L +         + L +G  L  LV+  Q  KL         Q +  +N+   
Sbjct: 61  KKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKF 120

Query: 104 LNAINEDGIKLVNI 117
           L+ I+  G+  +  
Sbjct: 121 LDFIHGIGLPEIFH 134

>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 159

 Score = 42.2 bits (99), Expect = 4e-06
 Identities = 17/74 (22%), Positives = 29/74 (39%)

Query: 44  KNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCA 103
           K W+ E L +         + L +G  L  LV+  Q  KL         Q +  +N+   
Sbjct: 17  KKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKF 76

Query: 104 LNAINEDGIKLVNI 117
           L+ I+  G+  +  
Sbjct: 77  LDFIHGIGLPEIFH 90

>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1 Length = 108

 Score = 38.1 bits (89), Expect = 7e-05
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 44  KNWVNEHLK-SVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTC 102
           + W+       +G   ++    L DG  LC L+  LQ   ++  +  P      LEN+  
Sbjct: 9   RVWIEGATGRRIG---DNFMDGLKDGVILCELINKLQPGSVQK-VNDPVQNWHKLENIGN 64

Query: 103 ALNAINEDGIK 113
            L AI   G+K
Sbjct: 65  FLRAIKHYGVK 75

>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1 Length = 144

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 7/77 (9%)

Query: 44  KNW----VNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKR---KLKFWIRKPTNQHQF 96
             W        +             L +G  L  LV  L       +K     P+   + 
Sbjct: 15  VEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFKQ 74

Query: 97  LENVTCALNAINEDGIK 113
           +E V   L A  + G+ 
Sbjct: 75  MEQVAQFLKAAEDYGVI 91

>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} Length = 190

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 9/83 (10%)

Query: 44  KNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKF---------WIRKPTNQH 94
           K W+   L        +L + L +G  L  L      + +             +      
Sbjct: 31  KRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHF 90

Query: 95  QFLENVTCALNAINEDGIKLVNI 117
           +  +NV   LNA++E G+  +  
Sbjct: 91  RHTDNVIQWLNAMDEIGLPKIFY 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	120
2vzc_A	131	Alpha-parvin; membrane, cytoplasm, cytoskeleton, c	99.96
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	99.94
2yrn_A	129	Neuron navigator 2 isoform 4; calponin homolgy dom	99.94
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	99.93
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	99.92
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	99.91
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	99.91
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	99.89
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	99.88
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	99.86
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	99.85
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	99.81
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	99.77
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	99.75
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	99.73
1p5s_A	203	RAS GTPase-activating-like protein RNG2; alpha-hel	99.43
1wyp_A	136	Calponin 1; CH domain, F-actin binding, all-alpha,	99.38
1wyn_A	146	Calponin-2; CH domain, F-actin binding, all alpha	99.34
1wyr_A	121	RHO guanine nucleotide exchange factor 6; CH domai	99.34
1h67_A	108	Calponin alpha; cytoskeleton, calponin homology do	99.33
1wym_A	155	Transgelin-2; CH domain, F-actin binding, all heli	99.31
1ujo_A	144	Transgelin; CH domain, actin binding, structural g	99.29
1p2x_A	159	RNG2 protein, RAS GTPase-activating-like protein;	99.28
2l3g_A	126	RHO guanine nucleotide exchange factor 7; structur	99.24
1wjo_A	124	T-plastin; CH domain, actin binding, structural ge	99.23
2rr8_A	190	Iqgap1 protein; F-actin binding protein, protein b	99.09
3i6x_A	193	P195, RAS GTPase-activating-like protein iqgap1; a	99.06
2qjz_A	123	Microtubule-associated protein RP/EB family member	98.83
1wyo_A	159	Protein EB3, microtubule-associated protein RP/EB	98.75
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	98.48
1wyl_A	116	NEDD9 interacting protein with calponin homology a	98.47
2d89_A	119	EHBP1 protein; all alpha, calponin homology domain	98.46
2d87_A	128	Smoothelin splice isoform L2; all alpha, calponin	98.41
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	98.39
2d88_A	121	Protein mical-3; all alpha, calponin homology doma	98.38
1bkr_A	109	Spectrin beta chain; filamentous actin-binding dom	98.38
1bhd_A	118	Utrophin; calponin homology, actin binding, struct	98.28
1wyq_A	127	Spectrin beta chain, brain 2; NPPSFA, structural g	98.28
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	98.25
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	98.17
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	98.12
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	98.07
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	98.07
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	98.01
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	97.97
2ee7_A	127	Sperm flagellar protein 1; all alpha protein, CH d	97.48
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	97.2
2qjx_A	127	Protein BIM1; calponin homology domain, protein bi	97.1
2r8u_A	268	Microtubule-associated protein RP/EB family member	96.87
4abo_I	145	MAL3, microtubule integrity protein MAL3; structur	96.86
1wix_A	164	HOOK homolog 1, RSGI RUH-026; structural genomics,	95.2

>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*

Probab=99.96  E-value=5.7e-29  Score=176.67  Aligned_cols=89  Identities=24%  Similarity=0.362  Sum_probs=84.0

Q ss_pred             chhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCcHHHHHhhHHHHHHHHH
Q psy5020          31 HEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTNQHQFLENVTCALNAIN  108 (120)
Q Consensus        31 ~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~r~qkieNv~~aL~flk  108 (120)
                      .+++|+.+|++|||+|||+||.+.+.+|+||++||+||+.||.|+|.|+|+++|  +++++|++++|++|||+.||+|++
T Consensus        15 ~~~e~~~~q~ktft~WiN~~L~~~~~~v~dL~~Dl~DGv~L~~Lle~ls~~~~~~~~~~~~p~~r~~kieNv~~aL~~lk   94 (131)
T 2vzc_A           15 HAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQ   94 (131)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHGGGTCCCCCTTTTTTTSHHHHHHHHHHTTCCCCTTSSCSSCCSHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHcccHHHHHHHHHHhcCCCCCHHHhcCCCCcHHHHHHHHHHHHHHHH
Confidence            467888899999999999999999999999999999999999999999999886  577889999999999999999999


Q ss_pred             hCCCeEeccCC
Q psy5020         109 EDGIKLVNIDY  119 (120)
Q Consensus       109 ~~gi~lvnI~~  119 (120)
                      +.||+++||+|
T Consensus        95 ~~gi~l~~I~~  105 (131)
T 2vzc_A           95 DGGLEKPKPRP  105 (131)
T ss_dssp             HTTCCCCSSCH
T ss_pred             HcCCCcCCCCH
Confidence            99999999986

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=99.94  E-value=1.1e-27  Score=192.82  Aligned_cols=89  Identities=42%  Similarity=0.719  Sum_probs=82.9

Q ss_pred             chhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCccccc-ccCCCCcHHHHHhhHHHHHHHHHh
Q psy5020          31 HEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKF-WIRKPTNQHQFLENVTCALNAINE  109 (120)
Q Consensus        31 ~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~-~~~~p~~r~qkieNv~~aL~flk~  109 (120)
                      .+++|+++|++|||+|||+||.+++.+|+||++||+||+.||+|+|+|+|+++++ ++++|++|+|++|||+.||+|+++
T Consensus        10 ~d~~we~iQ~ktFt~WiN~~L~~~~~~V~dL~~Dl~DG~~L~~Lle~ls~~~l~~~~~~~p~~r~~k~eNv~~al~~~~~   89 (347)
T 4b7l_A           10 EDAPWKKIQQNTFTRWCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDR   89 (347)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHhhCcCCCCcCCHHHHhcCHHHHHHHHHHHcCCccChhhcCCcccHHHHHHHHHHHHHHHHH
Confidence            4779999999999999999999999999999999999999999999999999974 778999999999999999999999


Q ss_pred             CCCeEeccCC
Q psy5020         110 DGIKLVNIDY  119 (120)
Q Consensus       110 ~gi~lvnI~~  119 (120)
                      .|++++||++
T Consensus        90 ~g~~lv~i~~   99 (347)
T 4b7l_A           90 ESIKLVSIDS   99 (347)
T ss_dssp             TTCCCSSCCH
T ss_pred             hccccCCCCc
Confidence            9999999985

>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.94  E-value=9.3e-28  Score=169.29  Aligned_cols=94  Identities=22%  Similarity=0.401  Sum_probs=87.4

Q ss_pred             cccccchhhHHHHHHHHHHHHHHHhhcccCC--cccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHH
Q psy5020          26 MQIKGHEDIWVDIQTHTFKNWVNEHLKSVGL--HVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCA  103 (120)
Q Consensus        26 ~~~~~~~~~w~~~Q~ktft~WiN~~L~~~~~--~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~a  103 (120)
                      .+.+..+++|++.|+++|++|||++|.+.+.  .|+||++||+||++||.|+|.|+|+++++++++|++++|++|||+.|
T Consensus         6 ~~~~~~~~~~~~~q~~~f~~WIN~~L~~~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~l~~~~~~p~~~~~~~eNv~~a   85 (129)
T 2yrn_A            6 SGKRKPVIHGLEDQKRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIENIDAC   85 (129)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHHHHHTCCCSCCSCHHHHSSSSHHHHHHHHHHTTCCCTTCCSSCCSTTHHHHHHHHH
T ss_pred             cchhcccchhhHHHHHHHHHHHHHHhcccCCCccchhHHHHcccHHHHHHHHHHHhcCCcccccCCCCcHHHHHHHHHHH
Confidence            3555688899999999999999999998875  59999999999999999999999999999888899999999999999


Q ss_pred             HHHHHhCCCeEeccCC
Q psy5020         104 LNAINEDGIKLVNIDY  119 (120)
Q Consensus       104 L~flk~~gi~lvnI~~  119 (120)
                      |+|+++.|+++++|++
T Consensus        86 L~~~~~~gv~~~~i~~  101 (129)
T 2yrn_A           86 LNFLAAKGINIQGLSA  101 (129)
T ss_dssp             HHHHHHHTCCCTTCCH
T ss_pred             HHHHHHhCCcccCCCh
Confidence            9999999999999975

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=99.93  E-value=1.5e-26  Score=181.31  Aligned_cols=89  Identities=42%  Similarity=0.713  Sum_probs=83.9

Q ss_pred             chhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCccc-ccccCCCCcHHHHHhhHHHHHHHHHh
Q psy5020          31 HEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL-KFWIRKPTNQHQFLENVTCALNAINE  109 (120)
Q Consensus        31 ~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i-~~~~~~p~~r~qkieNv~~aL~flk~  109 (120)
                      .+++|+.+|+++|++|||+||.+.+..|+||++||+||+.||.|+|+|+|+++ ++++.+|++++|++|||+.||+|+++
T Consensus        40 ~d~~w~~vQkktft~WiN~~L~~~~~~V~dL~~DL~DGv~L~~Lle~Ls~~~l~~~~~~~p~~r~~kleNv~~aL~~lk~  119 (272)
T 3hoc_A           40 EDAPWKKIQQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVALEFLDR  119 (272)
T ss_dssp             --CGGGGHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTSCCSSCCCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred             hChhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHhhHHHHHHHHHHHcCCccccccCCCCccHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999 77878899999999999999999999


Q ss_pred             CCCeEeccCC
Q psy5020         110 DGIKLVNIDY  119 (120)
Q Consensus       110 ~gi~lvnI~~  119 (120)
                      .|++++||++
T Consensus       120 ~gv~lvnI~~  129 (272)
T 3hoc_A          120 ESIKLVSIDS  129 (272)
T ss_dssp             TTCCCSSCCH
T ss_pred             cCCccccccc
Confidence            9999999985

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=99.92  E-value=2.5e-25  Score=171.16  Aligned_cols=89  Identities=40%  Similarity=0.729  Sum_probs=83.4

Q ss_pred             chhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCccc-ccccCCCCcHHHHHhhHHHHHHHHHh
Q psy5020          31 HEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL-KFWIRKPTNQHQFLENVTCALNAINE  109 (120)
Q Consensus        31 ~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i-~~~~~~p~~r~qkieNv~~aL~flk~  109 (120)
                      .++.|+.+|+++|++|||++|.+.+..|+||++||+||+.||+|+|+|+|+++ ++++++|++++|++|||+.||+|+++
T Consensus        13 ~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~~~~~~n~~~~~~~~~~eNv~~aL~~~k~   92 (245)
T 2wa7_A           13 EDAPWKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDR   92 (245)
T ss_dssp             --CGGGGHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhccccCCCccCHHHHcccHHHHHHHHHHHcCCCCchhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence            56799999999999999999998888999999999999999999999999998 67878899999999999999999999


Q ss_pred             CCCeEeccCC
Q psy5020         110 DGIKLVNIDY  119 (120)
Q Consensus       110 ~gi~lvnI~~  119 (120)
                      .|++++||++
T Consensus        93 ~g~~lv~I~~  102 (245)
T 2wa7_A           93 ESIKLVSIDS  102 (245)
T ss_dssp             TTCCCCSCCH
T ss_pred             cCCcccCCCH
Confidence            9999999985

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=99.91  E-value=5e-25  Score=174.50  Aligned_cols=92  Identities=35%  Similarity=0.483  Sum_probs=85.5

Q ss_pred             cccccchhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHH
Q psy5020          26 MQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALN  105 (120)
Q Consensus        26 ~~~~~~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~  105 (120)
                      ..+...+++|+.+|+++|++|||++|.+.+..|+||++||+||++||+|+|+|+|+++++  .+|++++|++|||+.||+
T Consensus        61 ~~~~~~~~e~~~vQkktft~WINs~L~~~~~~V~dL~~DL~DGvvL~~Lle~L~~~~l~~--~~~~~r~~kleNvn~aL~  138 (296)
T 3f7p_A           61 RAVIRIADERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR--EKGRMRFHKLQNVQIALD  138 (296)
T ss_dssp             --CEECCCHHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCCCCCC--CCCSSHHHHHHHHHHHHH
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHcccCCCCcccHHHHHhhHHHHHHHHHHhcCCcccc--cCCcChhhhhhhHHHHHH
Confidence            456678899999999999999999999988899999999999999999999999999987  468999999999999999


Q ss_pred             HHHhCCCeEeccCC
Q psy5020         106 AINEDGIKLVNIDY  119 (120)
Q Consensus       106 flk~~gi~lvnI~~  119 (120)
                      |+++.|++++||++
T Consensus       139 ~lk~~gv~lv~I~~  152 (296)
T 3f7p_A          139 YLRHRQVKLVNIRN  152 (296)
T ss_dssp             HHHHTTCCCTTCCH
T ss_pred             HHHHhCccccCCCh
Confidence            99999999999985

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=99.91  E-value=1.2e-24  Score=168.33  Aligned_cols=92  Identities=30%  Similarity=0.493  Sum_probs=81.5

Q ss_pred             ccccchhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHH
Q psy5020          27 QIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNA  106 (120)
Q Consensus        27 ~~~~~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~f  106 (120)
                      +...++++|+.+|+++|++|||++|.+.+..|+||++||+||+.||+|+|.|+|++++++ .+|++++|++|||+.||+|
T Consensus        16 ~~~~~~~~~~~~q~~~f~~WiN~~L~~~~~~v~~l~~dl~DGv~L~~Lle~l~~~~v~k~-~~~~~~~~~~eNi~~aL~~   94 (254)
T 1wku_A           16 RDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRP-DKGKMRFHKIANVNKALDF   94 (254)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCSCCCCC-CSCCSHHHHHHHHHHHHHH
T ss_pred             hhhhhhccchHHHHHHHHHHHHHHccccCCCccCHHHHccCHHHHHHHHHHhCcCCCCCC-CCCccHHHHHHhHHHHHHH
Confidence            344588899999999999999999999999999999999999999999999999999886 4689999999999999999


Q ss_pred             HHhCCCeEeccCC
Q psy5020         107 INEDGIKLVNIDY  119 (120)
Q Consensus       107 lk~~gi~lvnI~~  119 (120)
                      +++.||+++||++
T Consensus        95 ~k~~gv~lv~I~~  107 (254)
T 1wku_A           95 IASKGVKLVSIGA  107 (254)
T ss_dssp             HHTTTCCCCSCCH
T ss_pred             HHHcCCCccCCCH
Confidence            9999999999985

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=99.89  E-value=2.5e-23  Score=159.53  Aligned_cols=87  Identities=37%  Similarity=0.513  Sum_probs=80.3

Q ss_pred             chhhHHHHHHHHHHHHHHHhhcc-----cCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHH
Q psy5020          31 HEDIWVDIQTHTFKNWVNEHLKS-----VGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALN  105 (120)
Q Consensus        31 ~~~~w~~~Q~ktft~WiN~~L~~-----~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~  105 (120)
                      .+++|+.+|+++|++|||++|.+     .+..|+||++||+||+.||+|+|.|+|+++++  .+|++++|++||++.||+
T Consensus         5 ~~~e~~~~q~~~f~~WiN~~L~~~~~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~--~~~~~~~~~~eNv~~aL~   82 (245)
T 1sh5_A            5 EFDERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR--EKGRMRFHKLQNVQIALD   82 (245)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCCC--CCCCSHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhccccccccCCCCccchHhhccCHHHHHHHHHHhcCccccC--CCCcchHHHHHhHHHHHH
Confidence            35689999999999999999988     45689999999999999999999999999986  468899999999999999


Q ss_pred             HHHhCCCeEeccCC
Q psy5020         106 AINEDGIKLVNIDY  119 (120)
Q Consensus       106 flk~~gi~lvnI~~  119 (120)
                      |+++.|++++||++
T Consensus        83 ~~k~~g~~l~~I~~   96 (245)
T 1sh5_A           83 YLRHRQVKLVNIRN   96 (245)
T ss_dssp             HHHHTTCCCCSCCH
T ss_pred             HHHHcCCcccCCCh
Confidence            99999999999975

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=99.88  E-value=3.6e-23  Score=159.05  Aligned_cols=87  Identities=36%  Similarity=0.535  Sum_probs=81.1

Q ss_pred             chhhHHHHHHHHHHHHHHHhhcccCC-cccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh
Q psy5020          31 HEDIWVDIQTHTFKNWVNEHLKSVGL-HVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE  109 (120)
Q Consensus        31 ~~~~w~~~Q~ktft~WiN~~L~~~~~-~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~  109 (120)
                      .+++|+.+|+++|++|||++|.+.+. +|+|+++||+||+.||+|+|.|+|+++++  .+|++++|++||++.||+|+++
T Consensus         9 ~~~e~~~~q~~~f~~WiN~~L~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~--~~~~~~~~~~eNv~~aL~~~k~   86 (246)
T 1dxx_A            9 DSYEREDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPK--EKGSTRVHALNNVNKALRVLQN   86 (246)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCCC--CCCSSHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHhccccCCCCccCHHHHhCcHHHHHHHHHHHcCCcCCC--CCCccHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999998774 79999999999999999999999999986  3688999999999999999999


Q ss_pred             CCCeEeccCC
Q psy5020         110 DGIKLVNIDY  119 (120)
Q Consensus       110 ~gi~lvnI~~  119 (120)
                      .|++++||++
T Consensus        87 ~g~~l~~I~~   96 (246)
T 1dxx_A           87 NNVDLVNIGS   96 (246)
T ss_dssp             TTCCCTTCCH
T ss_pred             cCCccccCCH
Confidence            9999999985

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=99.86  E-value=3.2e-22  Score=173.26  Aligned_cols=87  Identities=32%  Similarity=0.554  Sum_probs=83.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhCC
Q psy5020          32 EDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDG  111 (120)
Q Consensus        32 ~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~g  111 (120)
                      ++.|+.+|+++|++|||++|.+.+++|+||++||+||++||.|+|+|+|++++++. +|++++|+++||+.||+|++..|
T Consensus         2 ~~~~~~~q~~~f~~Win~~L~~~~~~v~~l~~dl~DG~~L~~l~e~l~~~~~~~~~-~~~~~~~~~eN~~~~l~~~~~~g   80 (863)
T 1sjj_A            2 DPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPE-RGKMRVHKISNVNKALDFIASKG   80 (863)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHCSCCCCCSSTTSSCHHHHHHHHHTSCCCCCCSC-CCSSHHHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHhcCHHHHHHHHHHhCCCceeCCC-CCccHHHHHHHHHHHHHHHHHcC
Confidence            57899999999999999999999999999999999999999999999999998864 68999999999999999999999


Q ss_pred             CeEeccCC
Q psy5020         112 IKLVNIDY  119 (120)
Q Consensus       112 i~lvnI~~  119 (120)
                      |++|||++
T Consensus        81 ~~~~~i~~   88 (863)
T 1sjj_A           81 VKLVSIGA   88 (863)
T ss_dssp             CCCTTCCS
T ss_pred             CccCCCCh
Confidence            99999986

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=99.85  E-value=9e-22  Score=153.26  Aligned_cols=90  Identities=26%  Similarity=0.429  Sum_probs=76.8

Q ss_pred             cchhhHHHHHHHHHHHHHHHhhcccC---------CcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCcHHHHHh
Q psy5020          30 GHEDIWVDIQTHTFKNWVNEHLKSVG---------LHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTNQHQFLE   98 (120)
Q Consensus        30 ~~~~~w~~~Q~ktft~WiN~~L~~~~---------~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~r~qkie   98 (120)
                      +.+..|.+.|+++|++|||++|.+.+         ..|.|+++||+||+.||+|+|.|+|++++  +++++|.+++|++|
T Consensus        16 ~~~~~~~~~q~~~f~~WiN~~L~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~~~~i~~~~~~~~~~~e   95 (275)
T 1aoa_A           16 GTQHSYSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQE   95 (275)
T ss_dssp             -----CCHHHHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCSSCCHHHHHH
T ss_pred             CCccccCHHHHHHHHHHHHHHhccCccccccCCCCCccchHHHHhccHHHHHHHHHHhcCCCCCccccCCCCCCHHHHHH
Confidence            36679999999999999999998742         25799999999999999999999999987  45555667999999


Q ss_pred             hHHHHHHHHHhCCCeEeccCC
Q psy5020          99 NVTCALNAINEDGIKLVNIDY  119 (120)
Q Consensus        99 Nv~~aL~flk~~gi~lvnI~~  119 (120)
                      ||+.||+|+++.|++++||++
T Consensus        96 Nv~~aL~~~k~~g~~l~~I~~  116 (275)
T 1aoa_A           96 NLNLALNSASAIGCHVVNIGA  116 (275)
T ss_dssp             HHHHHHHHHHHTTCCCTTCCH
T ss_pred             HHHHHHHHHHHcCCcccCCCH
Confidence            999999999999999999975

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=99.81  E-value=1.9e-20  Score=156.29  Aligned_cols=86  Identities=16%  Similarity=0.257  Sum_probs=76.3

Q ss_pred             hhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCccccc--ccCCC-CcHHHHHhhHHHHHHHHH
Q psy5020          32 EDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKF--WIRKP-TNQHQFLENVTCALNAIN  108 (120)
Q Consensus        32 ~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~--~~~~p-~~r~qkieNv~~aL~flk  108 (120)
                      +..|+.+|+++|++|||+++  .+..|+||++||+||+.||+|+|+|+|++++.  .++.| ++|+|++|||+.||+|++
T Consensus       270 ~~~~~~~q~ktf~~WiN~~~--~~~~v~dl~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~~~r~~~leNv~~aL~~~k  347 (506)
T 1pxy_A          270 EDVETCRDERCYRLWINSLG--IDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGK  347 (506)
T ss_dssp             -CCHHHHHHHHHHHHHTTTT--CSSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhcC--CCCCcccHHHHHHhHHHHHHHHHHHcCCccccccccCCccccHHHHHHHHHHHHHHHH
Confidence            56899999999999999986  45789999999999999999999999998852  33333 689999999999999999


Q ss_pred             hCCCeEeccCC
Q psy5020         109 EDGIKLVNIDY  119 (120)
Q Consensus       109 ~~gi~lvnI~~  119 (120)
                      +.|++++||++
T Consensus       348 ~~~v~l~~I~~  358 (506)
T 1pxy_A          348 QLKFSLVNVAG  358 (506)
T ss_dssp             HTTCCCCSCCH
T ss_pred             HcCCcccCCCH
Confidence            99999999985

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.77  E-value=5.4e-19  Score=147.76  Aligned_cols=87  Identities=21%  Similarity=0.266  Sum_probs=71.4

Q ss_pred             cchhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCccc--ccccCCC-----CcHHHHHhhHHH
Q psy5020          30 GHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL--KFWIRKP-----TNQHQFLENVTC  102 (120)
Q Consensus        30 ~~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i--~~~~~~p-----~~r~qkieNv~~  102 (120)
                      .++.+++ .|+++|++|||++.  .+..|+|+++||+||+.||+|+|++.++++  ++++++|     ++|+|++|||+.
T Consensus       278 ~~~~e~~-~q~k~f~~WiN~~~--~~~~v~~l~~DL~DG~~L~~Lle~l~~g~v~~~~~~~~p~~~~~~~r~~~~eNv~~  354 (513)
T 1rt8_A          278 PFDAEGE-REARVFTLWLNSLD--VTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNY  354 (513)
T ss_dssp             ---CHHH-HHHHHHHHHHHHTT--CSSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGSCCCCTTSCCCCHHHHHHHHHH
T ss_pred             hhcchhH-HHHHHHHHHHHhcC--CCCCccCHHHHHhhHHHHHHHHHHhCCCCcchhhhcCCcccccccchHHHHHHHHH
Confidence            3555665 69999999999983  456899999999999999999996654444  4455445     689999999999


Q ss_pred             HHHHHHhCCCeEeccCC
Q psy5020         103 ALNAINEDGIKLVNIDY  119 (120)
Q Consensus       103 aL~flk~~gi~lvnI~~  119 (120)
                      ||+|+++.|++++||++
T Consensus       355 al~~~~~~gv~lv~i~~  371 (513)
T 1rt8_A          355 AVDLGKNQGFSLVGIQG  371 (513)
T ss_dssp             HHHHHHHTTCCCTTCCH
T ss_pred             HHHHHHHcCceeeccch
Confidence            99999999999999985

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.75  E-value=1.2e-18  Score=145.69  Aligned_cols=89  Identities=17%  Similarity=0.193  Sum_probs=74.8

Q ss_pred             chhhHHHHHHHHHHHHHHHhhcccC---------CcccchhhhhhhHHHHHHHHHHHcCcccc--ccc----CCCCcHHH
Q psy5020          31 HEDIWVDIQTHTFKNWVNEHLKSVG---------LHVEDLAKDLADGTKLCALVEILQKRKLK--FWI----RKPTNQHQ   95 (120)
Q Consensus        31 ~~~~w~~~Q~ktft~WiN~~L~~~~---------~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~----~~p~~r~q   95 (120)
                      ....|.+.|+++|++|||++|.+.+         ..+.||++||+||++||+|+|.|+|++++  +.+    .+|++++|
T Consensus         5 ~~~~~~~~q~~~f~~WIN~~L~~~~~~~~~lpi~~~v~dl~~dL~DG~~L~~Lie~l~~~~i~~~~i~~~~~~~~~~~~~   84 (513)
T 1rt8_A            5 FMHTINEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFK   84 (513)
T ss_dssp             ----CCHHHHHHHHHHHHHHHTTCTTTGGGCSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCCC---CCCHHH
T ss_pred             CcCcccHHHHHHHHHHHHHhccCCccccccCCCCCchHHHHHHhhcHHHHHHHHHHHcCCCcchhhcCCccccCcccHHH
Confidence            4568999999999999999998763         24789999999999999999999998874  232    24789999


Q ss_pred             HHhhHHHHHHHHHhCCC-eEeccCC
Q psy5020          96 FLENVTCALNAINEDGI-KLVNIDY  119 (120)
Q Consensus        96 kieNv~~aL~flk~~gi-~lvnI~~  119 (120)
                      ++||++.||+|++..|+ +++||++
T Consensus        85 ~~eNi~~~L~~~k~~g~~~l~~i~~  109 (513)
T 1rt8_A           85 CIENNNVVINSAKAMGGISITNIGA  109 (513)
T ss_dssp             HHHHHHHHHHHHHHHSSCCCSSCCH
T ss_pred             HHHHHHHHHHHHHHcCCCccCCcCH
Confidence            99999999999999999 9999975

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=99.73  E-value=3e-18  Score=142.92  Aligned_cols=87  Identities=24%  Similarity=0.272  Sum_probs=72.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhcccC---------CcccchhhhhhhHHHHHHHHHHHcCccc--ccccCCCC-cHHHHHhhH
Q psy5020          33 DIWVDIQTHTFKNWVNEHLKSVG---------LHVEDLAKDLADGTKLCALVEILQKRKL--KFWIRKPT-NQHQFLENV  100 (120)
Q Consensus        33 ~~w~~~Q~ktft~WiN~~L~~~~---------~~V~dL~~DL~DGv~Li~LLe~Lsg~~i--~~~~~~p~-~r~qkieNv  100 (120)
                      ..|.+.|+++|++|||++|++..         ..|.||++||+||++||+|+|.|+|+++  ++++++|. ++++++||+
T Consensus         2 ~~~~~~q~~~f~~WIN~~L~~~~~~~~~l~~~~~v~~l~~dL~DGv~L~~Lin~l~~~~i~~~~in~~~~~~~~~~~eNi   81 (506)
T 1pxy_A            2 SPGIQSEKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENH   81 (506)
T ss_dssp             -----CTHHHHHHHHHHHHTTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCSSCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhccCccccccCCCCCchhHHHHHhcchHHHHHHHHHHcCCCCCccccCccccccHHHHHHHH
Confidence            35888999999999999998872         2478999999999999999999999998  45555554 489999999


Q ss_pred             HHHHHHHHhCCCeEeccCC
Q psy5020         101 TCALNAINEDGIKLVNIDY  119 (120)
Q Consensus       101 ~~aL~flk~~gi~lvnI~~  119 (120)
                      +.||+|++..|+++++|++
T Consensus        82 ~~~L~~~k~~g~~~~~i~~  100 (506)
T 1pxy_A           82 TLCLNSAKAVGCSVVNIGT  100 (506)
T ss_dssp             HHHHHHHHHTTCCCTTCCH
T ss_pred             HHHHHHHHHhCCCcCCCCH
Confidence            9999999999999999964

>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.43  E-value=2.7e-13  Score=102.18  Aligned_cols=87  Identities=20%  Similarity=0.190  Sum_probs=72.1

Q ss_pred             chhhHHH-HHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh
Q psy5020          31 HEDIWVD-IQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE  109 (120)
Q Consensus        31 ~~~~w~~-~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~  109 (120)
                      ....++. ..+..+..||+..|...=....|+.+.|+||++||+|++.|.+..+++++..+++.|+++||++.+|+++++
T Consensus        47 ~~~~ye~l~~~~e~~~WIe~~l~~~l~~~~~f~~~LrDGvvLCkLiN~l~P~sv~kI~~~s~~~f~~~eNI~~FL~ac~~  126 (203)
T 1p5s_A           47 TLQAYDYLCRVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHG  126 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSCCCCGGGHHHHHTTSHHHHHHHHHHCTTSCCCCCCCSSSCCCHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCcccccCCCCCcchHHHHHHHHHHHHHH
Confidence            4445555 345779999999886431245699999999999999999999999988876778899999999999999999


Q ss_pred             CCCeEecc
Q psy5020         110 DGIKLVNI  117 (120)
Q Consensus       110 ~gi~lvnI  117 (120)
                      .|+.-+.+
T Consensus       127 ~Gvp~~~l  134 (203)
T 1p5s_A          127 IGLPEIFH  134 (203)
T ss_dssp             TTCCGGGC
T ss_pred             cCCCcccc
Confidence            99876553

>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.38  E-value=6.7e-13  Score=94.25  Aligned_cols=83  Identities=20%  Similarity=0.348  Sum_probs=70.7

Q ss_pred             chhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhC
Q psy5020          31 HEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINED  110 (120)
Q Consensus        31 ~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~  110 (120)
                      .++.+....+..++.||+..|... + -.|+.+.|+||++||+|++.+.+.++++++ .+.+.|+++||++.+|++++..
T Consensus        10 ~~~ky~~~~~~e~~~WIe~~l~~~-~-~~~l~~~L~DGvvLCkL~N~l~P~~v~ki~-~~~~~f~~~eNI~~Fl~a~~~~   86 (136)
T 1wyp_A           10 LAQKYDHQREQELREWIEGVTGRR-I-GNNFMDGLKDGIILCEFINKLQPGSVKKIN-ESTQNWHQLENIGNFIKAITKY   86 (136)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHTCCC-C-CSCTTHHHHTSHHHHHHHHHHSTTSSSCCC-CSSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHccCCHHHHHHHHHHHHHHhCCC-C-cHHHHHHHccHHhHHHHHHhhCCCCccccc-ccccchHHHHHHHHHHHHHHHc
Confidence            555666667789999999988643 3 368999999999999999999999998886 4667899999999999999999


Q ss_pred             CCeEec
Q psy5020         111 GIKLVN  116 (120)
Q Consensus       111 gi~lvn  116 (120)
                      |+.-+.
T Consensus        87 Gv~~~~   92 (136)
T 1wyp_A           87 GVKPHD   92 (136)
T ss_dssp             TCCGGG
T ss_pred             CCCccc
Confidence            988554

>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.34  E-value=1e-12  Score=94.37  Aligned_cols=83  Identities=22%  Similarity=0.324  Sum_probs=69.8

Q ss_pred             chhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhC
Q psy5020          31 HEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINED  110 (120)
Q Consensus        31 ~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~  110 (120)
                      .++.+....+..+..||+..+... + -.|+.+.|+||++||+|++.+.+.++++++ .+.+.|+++||++.+|++++..
T Consensus        10 ~~~ky~~~~~~e~~~WIe~~l~~~-i-~~~l~~~L~DGvvLCkL~N~l~P~~v~kin-~~~~~f~~~eNI~~FL~a~~~~   86 (146)
T 1wyn_A           10 LLSKYDPQKEAELRTWIEGLTGLS-I-GPDFQKGLKDGTILCTLMNKLQPGSVPKIN-RSMQNWHQLENLSNFIKAMVSY   86 (146)
T ss_dssp             CCSCCCTTHHHHHHHHHHHHHCCC-C-CSCHHHHHHTTSHHHHHHHHHCTTSCSCCC-CSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHccCCHHHHHHHHHHHHHHhCCC-C-cHHHHHHHccHHHHHHHHHHhCCCCccccc-cccccccHHHHHHHHHHHHHHc
Confidence            444555556778999999988643 3 368999999999999999999999998876 4678999999999999999999


Q ss_pred             CCeEec
Q psy5020         111 GIKLVN  116 (120)
Q Consensus       111 gi~lvn  116 (120)
                      |+.-+.
T Consensus        87 Gv~~~~   92 (146)
T 1wyn_A           87 GMNPVD   92 (146)
T ss_dssp             TCCSSS
T ss_pred             CCCccc
Confidence            988554

>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.34  E-value=2.3e-12  Score=89.96  Aligned_cols=75  Identities=16%  Similarity=0.242  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHhhcccC--C----cccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhCCCe
Q psy5020          40 THTFKNWVNEHLKSVG--L----HVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIK  113 (120)
Q Consensus        40 ~ktft~WiN~~L~~~~--~----~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~gi~  113 (120)
                      ++.+..||++.+....  .    +.+.+.+.|+||++||+|++.+.+.++++++..|++.|+++||++.+|+++++.|+.
T Consensus         8 e~e~~~WI~~~~~l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~l~Pg~i~ki~~~~~~~f~~~eNI~~FL~a~~~~g~~   87 (121)
T 1wyr_A            8 EEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQTEADCINNINDFLKGCATLQVE   87 (121)
T ss_dssp             HHHHHHHHHHHTSSCCCSSCCSCHHHHHHHHHHHSHHHHHHHHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhcCcCCcccCCCCcHHHHHHHHccHHHHHHHHHHhCCCCCCcCCCCCcchHHHHHHHHHHHHHHHHcCCC
Confidence            3469999999753221  1    122378999999999999999999999998778899999999999999999998874


Q ss_pred             E
Q psy5020         114 L  114 (120)
Q Consensus       114 l  114 (120)
                      +
T Consensus        88 ~   88 (121)
T 1wyr_A           88 I   88 (121)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1

Probab=99.33  E-value=1.3e-12  Score=89.27  Aligned_cols=74  Identities=24%  Similarity=0.412  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhCCCeEec
Q psy5020          40 THTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIKLVN  116 (120)
Q Consensus        40 ~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~gi~lvn  116 (120)
                      ++.++.||++.|+.. + -.|+.+.|+||++||+|++.+.+.++++++ .+++.|+++||++.+|+++++.|+.-+.
T Consensus         5 e~e~~~WIe~~l~~~-~-~~~l~~~L~dGvvLCkL~N~l~P~~v~ki~-~~~~~f~~~eNI~~Fl~a~~~~Gv~~~~   78 (108)
T 1h67_A            5 ERQLRVWIEGATGRR-I-GDNFMDGLKDGVILCELINKLQPGSVQKVN-DPVQNWHKLENIGNFLRAIKHYGVKPHD   78 (108)
T ss_dssp             SHHHHHHHHHHHSCC-C-CSCHHHHHHHCSHHHHHHHHHSTTSSTTCC-CTTSSHHHHHHHHHHHHHHHHHTSCGGG
T ss_pred             HHHHHHHHHHHhCCC-C-cHHHHHHHccHHHHHHHHHHhCCCCccccc-ccccchHHHHHHHHHHHHHHHcCCCccc
Confidence            456999999988643 3 368999999999999999999999999876 4667899999999999999999988554

>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=2.8e-12  Score=92.84  Aligned_cols=85  Identities=22%  Similarity=0.313  Sum_probs=71.4

Q ss_pred             chhhHHHHHHHHHHHHHHHhhcccCCcc-----cchhhhhhhHHHHHHHHHHHcC---cccccccCCCCcHHHHHhhHHH
Q psy5020          31 HEDIWVDIQTHTFKNWVNEHLKSVGLHV-----EDLAKDLADGTKLCALVEILQK---RKLKFWIRKPTNQHQFLENVTC  102 (120)
Q Consensus        31 ~~~~w~~~Q~ktft~WiN~~L~~~~~~V-----~dL~~DL~DGv~Li~LLe~Lsg---~~i~~~~~~p~~r~qkieNv~~  102 (120)
                      .+..+....+..+..||+..|... ++.     .++.+.|+||++||+|++.+.+   .++++++ .+++.|+++||++.
T Consensus        10 ~~~ky~~~~e~e~~~WIe~~l~~~-l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P~~~~~i~kIn-~~~~~F~~~eNI~~   87 (155)
T 1wym_A           10 IEKQYDADLEQILIQWITTQCRKD-VGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQ-ASTMAFKQMEQISQ   87 (155)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHSSSC-CCCCCSSHHHHHHHHHTSHHHHHHHHHHSCTTTCSCCCCC-CCCCHHHHHHHHHH
T ss_pred             HHccCCHHHHHHHHHHHHHHhCCC-CCCCcccHHHHHHHHcchHHHHHHHHHhccccCCCcCccc-CCCccccHHHHHHH
Confidence            455666667778999999988643 433     5899999999999999999999   8999886 47789999999999


Q ss_pred             HHHHHHhCCCeEecc
Q psy5020         103 ALNAINEDGIKLVNI  117 (120)
Q Consensus       103 aL~flk~~gi~lvnI  117 (120)
                      +|++++..|+.-+.+
T Consensus        88 FL~ac~~~Gv~~~~l  102 (155)
T 1wym_A           88 FLQAAERYGINTTDI  102 (155)
T ss_dssp             HHHHHHHHTCCTTTC
T ss_pred             HHHHHHHcCCCcccc
Confidence            999999999875443

>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1

Probab=99.29  E-value=4.2e-12  Score=90.91  Aligned_cols=80  Identities=18%  Similarity=0.128  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHhhcccCC----cccchhhhhhhHHHHHHHHHHHcC---cccc-cccCCCCcHHHHHhhHHHHHHHH
Q psy5020          36 VDIQTHTFKNWVNEHLKSVGL----HVEDLAKDLADGTKLCALVEILQK---RKLK-FWIRKPTNQHQFLENVTCALNAI  107 (120)
Q Consensus        36 ~~~Q~ktft~WiN~~L~~~~~----~V~dL~~DL~DGv~Li~LLe~Lsg---~~i~-~~~~~p~~r~qkieNv~~aL~fl  107 (120)
                      ...++..+..||+..|...-.    ...|+.+.|+||++||+|++.|.+   .+++ +++ .+++.|+++||++.+|+++
T Consensus         7 ~~~~e~e~~~WIe~~l~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P~~~~~I~~kin-~~~~~f~~~eNI~~FL~ac   85 (144)
T 1ujo_A            7 GEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPEN-PPSMVFKQMEQVAQFLKAA   85 (144)
T ss_dssp             CCHHHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSCCCSS-CCCSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCcCCcHHHHHHHHcchHHHHHHHHHhCcccCCCcceeec-CCCchhHHHHHHHHHHHHH
Confidence            344566799999998865411    236899999999999999999999   7888 665 5778999999999999999


Q ss_pred             HhCCCeEec
Q psy5020         108 NEDGIKLVN  116 (120)
Q Consensus       108 k~~gi~lvn  116 (120)
                      ++.|+.-+.
T Consensus        86 ~~~Gv~~~~   94 (144)
T 1ujo_A           86 EDYGVIKTD   94 (144)
T ss_dssp             HHHTCCSSS
T ss_pred             HHcCcCccc
Confidence            999987544

>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.28  E-value=7.7e-12  Score=90.85  Aligned_cols=76  Identities=24%  Similarity=0.291  Sum_probs=66.3

Q ss_pred             HHHHHHHHHhhcccCCc-ccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhCCCeEecc
Q psy5020          41 HTFKNWVNEHLKSVGLH-VEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIKLVNI  117 (120)
Q Consensus        41 ktft~WiN~~L~~~~~~-V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~gi~lvnI  117 (120)
                      .....||+..|+.. ++ -.|+.+.|+||++||+|++.+.+.++++++..+++.|+++||++.+|+++++.|+.-+.+
T Consensus        14 ~e~~~WIe~~l~~~-l~~~~~l~~~LkdGvvLCkL~N~l~P~~i~kI~~~~~~~f~~~eNI~~FL~a~~~~Gv~~~~l   90 (159)
T 1p2x_A           14 DEAKKWIEECLGTD-LGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFH   90 (159)
T ss_dssp             HHHHHHHHHHHTSC-CCCGGGHHHHTTTSHHHHHHHHHHCTTSCCCCCCCSSCCTTHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHhCCC-CCChHHHHHHHcchHHHHHHHHHhCCCCccccccccCCcchHHHHHHHHHHHHHHcCCCcccc
Confidence            56999999998643 43 468999999999999999999999999887667889999999999999999999875543

>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}

Probab=99.24  E-value=2.4e-11  Score=85.43  Aligned_cols=75  Identities=20%  Similarity=0.263  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHhh--cccC---Ccccch-hhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCC
Q psy5020          40 THTFKNWVNEHL--KSVG---LHVEDL-AKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGI  112 (120)
Q Consensus        40 ~ktft~WiN~~L--~~~~---~~V~dL-~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi  112 (120)
                      +..+..||+..+  ...+   .+-+++ .+.|+||++||+|++.+.+.++++++..|++.|+++||++.+|+++++ .|+
T Consensus        14 ~~e~~~WI~~~~~L~~~~~~~~~~~~~l~~~LkdGvvLCkLiN~l~Pg~i~kI~~~~~~~f~~~eNI~~FL~a~~~~~g~   93 (126)
T 2l3g_A           14 AEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEPRSESECLSNIREFLRGCGASLRL   93 (126)
T ss_dssp             HHHHHHHHHHTTSSCCCSSCCSCHHHHHHHHHTTSHHHHHHHHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhCccccCCCCCChhhHHHHHHccHHHHHHHHHHhCCCCCCccCCCCCcchHHHHHHHHHHHHHHHhCCC
Confidence            345899999973  3322   134566 589999999999999999999999887899999999999999999999 886


Q ss_pred             eE
Q psy5020         113 KL  114 (120)
Q Consensus       113 ~l  114 (120)
                      .+
T Consensus        94 ~l   95 (126)
T 2l3g_A           94 ET   95 (126)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A

Probab=99.23  E-value=2e-11  Score=85.86  Aligned_cols=78  Identities=15%  Similarity=0.351  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHhhcccC--Ccccchh-hhhhhHHHHHHHHHHHcCccccc-ccCCCC-cHHHHHhhHHHHHHHHHhCC
Q psy5020          37 DIQTHTFKNWVNEHLKSVG--LHVEDLA-KDLADGTKLCALVEILQKRKLKF-WIRKPT-NQHQFLENVTCALNAINEDG  111 (120)
Q Consensus        37 ~~Q~ktft~WiN~~L~~~~--~~V~dL~-~DL~DGv~Li~LLe~Lsg~~i~~-~~~~p~-~r~qkieNv~~aL~flk~~g  111 (120)
                      ++.++++++|+|.++.+.+  ..|+|+. .+++||+.+|.||+.+.++.+.. ...++. ++.++.+|+++|++++++.|
T Consensus         6 ~i~d~~ll~W~N~kl~~~g~~~~I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~~lv~~~~L~~~d~~~Na~~ais~ArklG   85 (124)
T 1wjo_A            6 SGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARRIG   85 (124)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCSSCCHHHHHHHHHHHHHHHHHTC
T ss_pred             ccCHHHHHHHHHHHHHhcCCCcccCCCCcchhhhhHHHHHHHHHHCcCccCHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            3456789999999998766  4799999 99999999999999999998854 234555 78999999999999999999


Q ss_pred             CeE
Q psy5020         112 IKL  114 (120)
Q Consensus       112 i~l  114 (120)
                      +.+
T Consensus        86 ~~~   88 (124)
T 1wjo_A           86 ARV   88 (124)
T ss_dssp             CSC
T ss_pred             CCc
Confidence            875

>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}

Probab=99.09  E-value=9.7e-11  Score=87.25  Aligned_cols=85  Identities=18%  Similarity=0.180  Sum_probs=67.8

Q ss_pred             chhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccC-------CCCcHHHHHhhHH
Q psy5020          31 HEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIR-------KPTNQHQFLENVT  101 (120)
Q Consensus        31 ~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~-------~p~~r~qkieNv~  101 (120)
                      .+.++...+ ..+..||+..+...-....|+.+.|+||++||+|++.+.+..++  +++.       .+++.|+++||++
T Consensus        19 ~a~~y~~~~-~e~~~WIe~~lg~~lp~~~~f~~~LrDGvvLCkL~N~l~P~sv~~~kI~~~~~~~~~~~~~~f~~~eNI~   97 (190)
T 2rr8_A           19 VAYEYLCHL-EEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVI   97 (190)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHSCCCCCCHHHHHHHHSSHHHHHHHHHHSCTTTSCSSCSSTTTCHHHHHTCCCSSTHHHHH
T ss_pred             HHHhhcHHH-HHHHHHHHHHhCCCCCChhHHHHHHcchhhHHHHHHHhCCCCcccccccccccccccCCCCcchHHHHHH
Confidence            566666666 88999999988643223468999999999999999999998774  4432       2567899999999


Q ss_pred             HHHHHHHhCCCeEec
Q psy5020         102 CALNAINEDGIKLVN  116 (120)
Q Consensus       102 ~aL~flk~~gi~lvn  116 (120)
                      .+|+++++.|+.-+.
T Consensus        98 ~FL~ac~~~Gvp~~~  112 (190)
T 2rr8_A           98 QWLNAMDEIGLPKIF  112 (190)
T ss_dssp             HHHHGGGGTTCCSTT
T ss_pred             HHHHHHHHcCCCccc
Confidence            999999999987543

>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}

Probab=99.06  E-value=2.6e-10  Score=85.31  Aligned_cols=74  Identities=22%  Similarity=0.304  Sum_probs=61.3

Q ss_pred             HHHHHHHHhhcccCCc-ccchhhhhhhHHHHHHHHHHHcCcccc--cccC-------CCCcHHHHHhhHHHHHHHHHhCC
Q psy5020          42 TFKNWVNEHLKSVGLH-VEDLAKDLADGTKLCALVEILQKRKLK--FWIR-------KPTNQHQFLENVTCALNAINEDG  111 (120)
Q Consensus        42 tft~WiN~~L~~~~~~-V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~-------~p~~r~qkieNv~~aL~flk~~g  111 (120)
                      ....||+..++. .++ ..|+.+.|+||++||+|++.|.+..+|  +++.       .+++.|++++||+.+|+++++.|
T Consensus        51 e~~~WIe~~lg~-~l~~~~~l~~~LrdGvvLCkL~N~l~Pg~vp~kkI~~~~~~~~~~~~~~F~~~eNI~~FL~ac~~~G  129 (193)
T 3i6x_A           51 EAKRWMEACLGE-DLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMDEIG  129 (193)
T ss_dssp             HHHHHHHHHHSS-CCCCGGGHHHHHTTSHHHHHHHHHHCTTTCCGGGSTTTTCHHHHHSCCCGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCC-CCCChHHHHHHhccHHHHHHHHHHHCCCCCCccccCCcccccccCcccchHHHHHHHHHHHHHHHcC
Confidence            688999998864 343 458999999999999999999998885  4432       35678999999999999999999


Q ss_pred             CeEec
Q psy5020         112 IKLVN  116 (120)
Q Consensus       112 i~lvn  116 (120)
                      +.-+.
T Consensus       130 vp~~~  134 (193)
T 3i6x_A          130 LPKIF  134 (193)
T ss_dssp             CCGGG
T ss_pred             CCccc
Confidence            87543

>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A

Probab=98.83  E-value=1.3e-08  Score=71.22  Aligned_cols=71  Identities=17%  Similarity=0.406  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCcHHHHHhhHHHHHHHHHhCCCeE
Q psy5020          40 THTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTNQHQFLENVTCALNAINEDGIKL  114 (120)
Q Consensus        40 ~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~r~qkieNv~~aL~flk~~gi~l  114 (120)
                      ++....|||..|...   ++-+ ++|+||+.+|+|++.|.+.++|  +.+-++++.++.++|+....+.+++.||.-
T Consensus         7 r~ElL~WIN~~L~~~---~~ki-E~L~~Ga~yCqlmd~l~Pg~v~l~KVkf~a~~e~e~~~N~k~lq~af~k~gV~k   79 (123)
T 2qjz_A            7 RHDMLAWINESLQLN---LTKI-EQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK   79 (123)
T ss_dssp             HHHHHHHHHHHHTCC---CCCG-GGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHCCC---CchH-HHcCchHHHHHHHHHHccCCCcHHHhccCCCChHHHHHHHHHHHHHHHHcCCCC
Confidence            456899999988543   3222 6899999999999999999988  665479999999999999999999999863

>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.75  E-value=2.6e-08  Score=72.51  Aligned_cols=72  Identities=18%  Similarity=0.379  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCcHHHHHhhHHHHHHHHHhCCCeE
Q psy5020          39 QTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTNQHQFLENVTCALNAINEDGIKL  114 (120)
Q Consensus        39 Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~r~qkieNv~~aL~flk~~gi~l  114 (120)
                      +++....|||..|...   +.-+ ++|+||+.+|+|++.|-+..+|  +.+-++++.++.++|+....+.+++.||.-
T Consensus        23 sr~ElL~WIN~~L~~~---~~ki-E~L~~GaayCQLmd~L~PgsV~l~KVkf~a~~e~e~~~N~k~lQ~af~k~gV~k   96 (159)
T 1wyo_A           23 SRHDMLAWVNDSLHLN---YTKI-EQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDK   96 (159)
T ss_dssp             CHHHHHHHHHHHSCCC---CSSG-GGGGGCHHHHHHHHHHSTTSSCTTSCCTTCCSSHHHHHHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHCCC---Cchh-hhcCccHHHHHHHHHHccCCCcHhhhccCCCChHHHHHHHHHHHHHHHHcCCCC
Confidence            5667999999988533   3222 6899999999999999999888  655479999999999999999999998863

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=98.48  E-value=1.7e-07  Score=72.46  Aligned_cols=74  Identities=18%  Similarity=0.290  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHhhcccCCc-ccchhhhhhhHHHHHHHHHHHcCcccc------cccCCCCcHHHHHhhHHHHHHHHHhCCC
Q psy5020          40 THTFKNWVNEHLKSVGLH-VEDLAKDLADGTKLCALVEILQKRKLK------FWIRKPTNQHQFLENVTCALNAINEDGI  112 (120)
Q Consensus        40 ~ktft~WiN~~L~~~~~~-V~dL~~DL~DGv~Li~LLe~Lsg~~i~------~~~~~p~~r~qkieNv~~aL~flk~~gi  112 (120)
                      ++.+.+|+|.++...+.. |+|+.++++||..+|.|+..+.+..++      .+...+...-...+|+..|++.+++.||
T Consensus       170 ~~~LL~W~n~~l~~~g~~~I~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~~~~~~~~~~n~~~a~~~A~~lGi  249 (275)
T 1aoa_A          170 EELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGC  249 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHHhcCCCcchhhhhhhhhhHHHHHHHHHHCCCccccccccccccccCCCccCHHHHHHHHHHHHHHcCC
Confidence            677999999999877754 999999999999999999999998543      1222344456788999999999998887


Q ss_pred             e
Q psy5020         113 K  113 (120)
Q Consensus       113 ~  113 (120)
                      .
T Consensus       250 ~  250 (275)
T 1aoa_A          250 R  250 (275)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A

Probab=98.47  E-value=2.6e-07  Score=63.58  Aligned_cols=71  Identities=34%  Similarity=0.455  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020          40 THTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGIK  113 (120)
Q Consensus        40 ~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi~  113 (120)
                      ++...+|||.++... +..|+|+.++++||..+|.|+..+.++-++.   ..-......+|+..|++..++ .||.
T Consensus         9 ~~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~---~~l~~~~~~~n~~~af~~Ae~~lgi~   81 (116)
T 1wyl_A            9 QEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEP---SELQGLGALEATAWALKVAENELGIT   81 (116)
T ss_dssp             HHHHHHHHHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHHCTTSCCC---SSGGGCCHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCCCCH---HHhccCCHHHHHHHHHHHHHHHcCCc
Confidence            457899999999876 5789999999999999999999999987753   122234678999999999987 7885

>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.46  E-value=2.6e-07  Score=63.89  Aligned_cols=71  Identities=18%  Similarity=0.418  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhCCCe
Q psy5020          40 THTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIK  113 (120)
Q Consensus        40 ~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~gi~  113 (120)
                      ++...+|||.++... +..|+|+.++++||..+|.|+..+.++.++.-.-.+   ...++|+..|++..++.||.
T Consensus        11 ~~~LL~W~~~~~~~y~~v~v~nFs~sw~dG~af~aLi~~~~P~lid~~~l~~---~~~~~n~~~af~~a~~LGi~   82 (119)
T 2d89_A           11 SQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNP---QDIKENNKKAYDGFASIGIS   82 (119)
T ss_dssp             HHHHHHHHHHHTTTCSSCCCCCSSHHHHTTHHHHHHHHHHCTTTSCGGGCCT---TCSHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCChhhhcc---cCHHHHHHHHHHHHHHhCCC
Confidence            457899999999876 478999999999999999999999998775321223   34689999999998888875

>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A

Probab=98.41  E-value=3.6e-07  Score=64.00  Aligned_cols=71  Identities=13%  Similarity=0.329  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020          40 THTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGIK  113 (120)
Q Consensus        40 ~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi~  113 (120)
                      ++.+.+|||.++... +..|+|+.++++||..+|.|+..+.++-++.-   .-......+|+..|++..++ .||.
T Consensus         9 k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~af~aLih~~~P~lid~~---~l~~~~~~~n~~~af~~Ae~~lgip   81 (128)
T 2d87_A            9 KQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYG---QLSPQNRRQNFEVAFSSAETHADCP   81 (128)
T ss_dssp             HHHHHHHHHHHSSSCTTCCCSCTTTTTTSSHHHHHHHHHHCTTTSCST---TSCSSCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCCHH---HcCccCHHHHHHHHHHHHHHcCCCC
Confidence            467899999999876 57899999999999999999999999877431   12234568999999999997 5773

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=98.39  E-value=5.4e-07  Score=75.78  Aligned_cols=70  Identities=26%  Similarity=0.381  Sum_probs=56.8

Q ss_pred             HHHHHHHhhcccC---------CcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCc-HHHHHhhHHHHHHHH-Hh
Q psy5020          43 FKNWVNEHLKSVG---------LHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTN-QHQFLENVTCALNAI-NE  109 (120)
Q Consensus        43 ft~WiN~~L~~~~---------~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~-r~qkieNv~~aL~fl-k~  109 (120)
                      -..|++.-. ...         .++.|+.+.|+||+.||.|++.|.+..++  +++..|++ .|++++||+.+|+++ ++
T Consensus        10 ~~~Wl~~~~-~l~~~~~~~~~~~~~~~l~~~L~~G~~Lc~l~n~l~p~~v~~~~~~~~~~~~~f~~~~ni~~Fl~~~~~~   88 (587)
T 3ky9_A           10 CTHWLIQCR-VLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREVNLRPQMSQFLCLKNIRTFLSTCCEK   88 (587)
T ss_dssp             HHHHHHHTT-CSCTTSTTTSTTCCHHHHHHHHSSTHHHHHHHHHHSTTSSCGGGSCSSCTTBHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhC-CCCCcccccCCCCChhhHHHHhCcHHHHHHHHHHhCCCCCCccccCCCccccchHHHHHHHHHHHHHHHH
Confidence            567999732 121         24789999999999999999999999885  55555665 699999999999999 77


Q ss_pred             CCCe
Q psy5020         110 DGIK  113 (120)
Q Consensus       110 ~gi~  113 (120)
                      .|+.
T Consensus        89 ~g~~   92 (587)
T 3ky9_A           89 FGLK   92 (587)
T ss_dssp             TCCC
T ss_pred             cCCC
Confidence            8875

>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A

Probab=98.38  E-value=4e-07  Score=63.15  Aligned_cols=69  Identities=20%  Similarity=0.406  Sum_probs=56.9

Q ss_pred             HHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020          42 TFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGIK  113 (120)
Q Consensus        42 tft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi~  113 (120)
                      ...+|||.++... +..|+|+.++++||..+|.|+..+.++-++.-   .-......+|+..|++..++ .||.
T Consensus        13 ~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~---~l~~~~~~~n~~~af~~Ae~~lgi~   83 (121)
T 2d88_A           13 KLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFD---SLDEQNVEKNNQLAFDIAEKELGIS   83 (121)
T ss_dssp             HHHHHHHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHHCTTTSCTT---TSCTTCHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHhccCCCCCCCCchhhccccHHHHHHHHHhCcCcCCHH---HcCccCHHHHHHHHHHHHHHHcCCC
Confidence            5789999999775 57899999999999999999999999877431   12234568999999999985 8885

>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A

Probab=98.38  E-value=4.7e-07  Score=61.69  Aligned_cols=71  Identities=15%  Similarity=0.231  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHH-hCCCe
Q psy5020          40 THTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAIN-EDGIK  113 (120)
Q Consensus        40 ~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk-~~gi~  113 (120)
                      ++...+|||.++... +..|+|+.++++||..+|.|+..+.++-++.-.-.+   ....+|+..|++..+ +.||.
T Consensus         5 k~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~~---~~~~~n~~~af~~Ae~~lgi~   77 (109)
T 1bkr_A            5 KDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKK---SNAHYNLQNAFNLAEQHLGLT   77 (109)
T ss_dssp             HHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCCT---TCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHccCCCCCCCCCcccccccHHHHHHHHHHCcCCCCHHHcCc---CCHHHHHHHHHHHHHHHcCCC
Confidence            567899999998765 478999999999999999999999998775322223   356899999999997 57875

>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1

Probab=98.28  E-value=4.4e-07  Score=62.66  Aligned_cols=71  Identities=14%  Similarity=0.231  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHH-hCCCe
Q psy5020          40 THTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAIN-EDGIK  113 (120)
Q Consensus        40 ~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk-~~gi~  113 (120)
                      ++...+|||.++... +..|+|+.++++||..+|.|+..+.++-++.-.   -......+|+..|++..+ +.||.
T Consensus        10 ~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~---l~~~~~~~n~~~af~~Ae~~lgi~   82 (118)
T 1bhd_A           10 EKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDK---VVKMSPIERLEHAFSKAQTYLGIE   82 (118)
T ss_dssp             HHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHH---HHHSCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhccCCCCCCCCCcccccCcHHHHHHHHHHCcCcCCHHH---hCcCCHHHHHHHHHHHHHHHcCCC
Confidence            567899999999876 478999999999999999999999998775311   112345899999999997 67875

>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}

Probab=98.28  E-value=6.7e-07  Score=62.49  Aligned_cols=71  Identities=20%  Similarity=0.246  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHH-hCCCe
Q psy5020          40 THTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAIN-EDGIK  113 (120)
Q Consensus        40 ~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk-~~gi~  113 (120)
                      ++...+|||.++... +..|+|+.++++||..+|.|+..+.++-++.-.-.+   ....+|++.|++..+ +.||.
T Consensus         9 k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~Af~aLih~~~P~lid~~~l~~---~~~~~n~~~af~~Ae~~Lgi~   81 (127)
T 1wyq_A            9 KDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKK---CNAHYNLQNAFNLAEKELGLT   81 (127)
T ss_dssp             THHHHHHHHHHHHTSSSCCCSCSSTTSSSSHHHHHHHHHHCTTTCCTTTSCS---SCCHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHHCcCcCCHHHhCc---CCHHHHHHHHHHHHHHHcCCC
Confidence            356899999998765 478999999999999999999999998775311122   345789999999998 57875

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=98.25  E-value=1.6e-06  Score=66.14  Aligned_cols=70  Identities=17%  Similarity=0.343  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020          40 THTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGIK  113 (120)
Q Consensus        40 ~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi~  113 (120)
                      ++.+.+|+|.++.  +..|+|+.++++||..+|.|+..+.+..++.+.  +...-..++|+..|++.+++ .||.
T Consensus       145 ~~~LL~W~~~~~~--~~~v~nFs~s~~dG~a~~aLi~~~~P~~i~~~~--~l~~~~~~~n~~~a~~~A~~~lGi~  215 (245)
T 2wa7_A          145 KQRLLGWIQNKIP--YLPITNFNQNWQDGKALGALVDSCAPGLCPDWE--SWDPQKPVDNAREAVQQADDWLGVP  215 (245)
T ss_dssp             HHHHHHHHHHHST--TSCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGG--GSCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHhCC--CCCCCCCcccchhhHHHHHHHHHHCcccccccc--ccCcccHHHHHHHHHHHHHHhCCCC
Confidence            5689999999985  468999999999999999999999998875442  22334678999999999998 8886

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=98.17  E-value=2.3e-06  Score=66.66  Aligned_cols=70  Identities=20%  Similarity=0.347  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020          40 THTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGIK  113 (120)
Q Consensus        40 ~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi~  113 (120)
                      ++.+.+|||.++.  +..|+|+.++++||..+|.|+..+.+.-++.+..  -......+|+..|++..++ .||.
T Consensus       172 k~~LL~W~n~~~~--~~~I~nFs~sw~DG~af~aLi~~~~P~li~d~~~--l~~~~~~~n~~~Af~~Ae~~lGi~  242 (272)
T 3hoc_A          172 KQRLLGWIQNKLP--QLPITNFSRDWQSGRALGALVDSCAPGLCPDWDS--WDASKPVTNAREAMQQADDWLGIP  242 (272)
T ss_dssp             HHHHHHHHHHHCT--TSCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGG--SCTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHhhCC--CCCCCChhhcccchHHHHHHHHHhCcccccchhh--cCccCHHHHHHHHHHHHHHhCCCC
Confidence            6789999999874  5789999999999999999999999988854431  2234679999999999998 8884

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=98.12  E-value=1.1e-06  Score=66.80  Aligned_cols=72  Identities=15%  Similarity=0.285  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020          39 QTHTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGIK  113 (120)
Q Consensus        39 Q~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi~  113 (120)
                      .++.+.+|+|.++... +..|+|+.++++||..+|.|+..+.+..++.-.   -..-...+|+..|++.+++ .||.
T Consensus       134 ~~~~LL~W~~~~~~~~~~~~v~nF~~s~~DG~a~~aLi~~~~P~~i~~~~---l~~~~~~~n~~~a~~~a~~~lGi~  207 (245)
T 1sh5_A          134 AKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNK---VYRQTNLENLDQAFSVAERDLGVT  207 (245)
T ss_dssp             HHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHHH---HHHSCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhccCCCcccCCccccccchHHHHHHHHHHCCCCCCHHH---cccCCHHHHHHHHHHHHHHhCCCC
Confidence            3567999999999765 578999999999999999999999988775311   1123468999999999996 8875

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=98.07  E-value=1.2e-05  Score=61.56  Aligned_cols=71  Identities=15%  Similarity=0.303  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020          40 THTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGIK  113 (120)
Q Consensus        40 ~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi~  113 (120)
                      ++.+.+|||.++... +..|+|+.++++||..+|.|+..+.+..++.-.-.+   -...+|+..|++.+++ .||.
T Consensus       142 ~~~LL~W~~~~~~~y~~v~v~nFs~s~~DG~a~~aLi~~~~P~~id~~~l~~---~~~~~n~~~a~~~A~~~lGi~  214 (254)
T 1wku_A          142 KEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRK---DDPIGNLNTAFEVAEKYLDIP  214 (254)
T ss_dssp             HHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCTTSCCGGGCCT---TCHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHccCCCCCcCCCCccchhhHHHHHHHHHHHCCCcccccccCc---CCHHHHHHHHHHHHHHHcCCC
Confidence            567999999988654 468999999999999999999999998775322223   3578999999999986 7886

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=98.07  E-value=3.6e-06  Score=66.33  Aligned_cols=72  Identities=15%  Similarity=0.264  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHH-hCCCe
Q psy5020          39 QTHTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAIN-EDGIK  113 (120)
Q Consensus        39 Q~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk-~~gi~  113 (120)
                      .++.+.+|||.++... +..|+|+.++++||..+|.|+..+.+.-++.-.-.+.   ...+|+..|++.++ +.||.
T Consensus       190 ~k~~LL~W~n~~~~~y~~v~I~nFs~sw~DG~af~aLI~~~~P~lid~~~l~~~---~~~~N~~~Af~~Ae~~LGi~  263 (296)
T 3f7p_A          190 AKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYRQ---TNLENLDQAFSVAERDLGVT  263 (296)
T ss_dssp             HHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHHHCGGGCCHHHHTTS---CHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCCCCcCCCccccccccHHHHHHHHHHCcCccCHHHcCcc---cHHHHHHHHHHHHHHhCCCC
Confidence            3567999999999765 4789999999999999999999999887653111233   46889999999994 68875

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=98.01  E-value=7e-06  Score=62.50  Aligned_cols=71  Identities=17%  Similarity=0.285  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCccccccc-CCCCcHHHHHhhHHHHHHHHH-hCCCe
Q psy5020          40 THTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWI-RKPTNQHQFLENVTCALNAIN-EDGIK  113 (120)
Q Consensus        40 ~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~-~~p~~r~qkieNv~~aL~flk-~~gi~  113 (120)
                      ++.+.+|+|.++... +..|+|+.++++||..+|.|+..+.+..++.-. ..+.   ...+|+..|++.++ +.||.
T Consensus       137 ~~~LL~W~~~~~~~~~~~~i~nFs~s~~DG~a~~aLi~~~~P~li~~~~~~~~~---~~~~n~~~a~~~A~~~lGi~  210 (246)
T 1dxx_A          137 EKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVVSQQ---SATQRLEHAFNIARYQLGIE  210 (246)
T ss_dssp             HHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHTCC---CHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHhccCCCCCcCCCcccchhHHHHHHHHHHHCcCccchhhhcccC---CHHHHHHHHHHHHHHhCCCC
Confidence            567999999999876 478999999999999999999999987764211 1122   35789999999998 68886

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=97.97  E-value=9.1e-06  Score=65.03  Aligned_cols=70  Identities=17%  Similarity=0.345  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020          40 THTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGIK  113 (120)
Q Consensus        40 ~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi~  113 (120)
                      ++.+.+|+|.++.  +..|+|+.++++||..||.|+..+.++.++.+..  -..-..++|+..|++.+++ .||.
T Consensus       142 k~~LL~W~~~~~~--~~~v~nF~~sw~DG~af~aLi~~~~P~~~~d~~~--l~~~~~~~n~~~Af~~Ae~~lGip  212 (347)
T 4b7l_A          142 KQRLLGWIQNKIP--YLPITNFNQNWQDGKALGALVDSCAPGLCPDWES--WDPQKPVDNAREAMQQADDWLGVP  212 (347)
T ss_dssp             HHHHHHHHHHHCT--TSCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGG--SCTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHhhCC--CcccCCCCCCccchHHHHHHHHHhCCccccchhh--cCcCCHHHHHHHHHHHHHHhcCCC
Confidence            5679999999974  4679999999999999999999999987764432  2234568899999999987 6875

>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.48  E-value=0.0004  Score=48.60  Aligned_cols=76  Identities=13%  Similarity=0.256  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc-cccCCCCcHHHHHhhHHHH-HHHHHhCCCeE
Q psy5020          37 DIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK-FWIRKPTNQHQFLENVTCA-LNAINEDGIKL  114 (120)
Q Consensus        37 ~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~-~~~~~p~~r~qkieNv~~a-L~flk~~gi~l  114 (120)
                      +.+.+..-+|++. + ....++.|+..||.||+.+.+++...-++-+. .-+.+..+...|+.|++.. ..+++..|+++
T Consensus        14 ~ee~~el~~WL~~-l-~Ls~~~rn~rRDFSdG~lvAEIl~~y~Pk~Vdlh~y~~~~S~~~K~~NW~~ln~kvl~kl~~~l   91 (127)
T 2ee7_A           14 EEALHQLYLWVDN-I-PLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLNRKVLKRLNFSV   91 (127)
T ss_dssp             HHHHHHHHHHHHH-S-CCSCCSSCHHHHHTTSHHHHHHHHHHCTTTCCCSSCCCCSSHHHHHHHHHHHHHHTTGGGTCCC
T ss_pred             HHHHHHHHHHHHc-C-CCCCCCCchhhhccchhHHHHHHHHHCcCcccccccCCCCcHHHHHHhHHHHHHHHHHHcCCCC
Confidence            4466788999996 4 34457899999999999999999999987654 2234677899999999998 48999988876

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=97.20  E-value=0.00011  Score=63.61  Aligned_cols=71  Identities=14%  Similarity=0.290  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020          40 THTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGIK  113 (120)
Q Consensus        40 ~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi~  113 (120)
                      ++.+..|||.++... +..|+|+.++++||..+|.|+..+.|..++.-.-.|   -...+|+..|++.+++ .||.
T Consensus       123 ~~~ll~W~~~~~~~~~~~~v~nf~~s~~dg~~~~~li~~~~p~~~~~~~~~~---~~~~~n~~~a~~~a~~~lg~~  195 (863)
T 1sjj_A          123 KEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRK---DDPLTNLNTAFDVAEKYLDIP  195 (863)
T ss_dssp             TTTTHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHTTCCSSSCSGGGGS---CCCGGGCTHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhccCCCCCCCCCCccccccHHHHHHHHHHhCCCCcChhhCCC---CCHHHHHHHHHHHHHHhCCCC
Confidence            346899999988654 468999999999999999999999998775421122   2357899999999986 7875

>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}

Probab=97.10  E-value=0.0034  Score=43.85  Aligned_cols=69  Identities=16%  Similarity=0.263  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCcHHHHHhhHHHHHHHHHhCCCe
Q psy5020          40 THTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTNQHQFLENVTCALNAINEDGIK  113 (120)
Q Consensus        40 ~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~r~qkieNv~~aL~flk~~gi~  113 (120)
                      +..+..|+|+.|...=..    .+++++|...|++++.+-|. +|  +..-++++....+.|....-+.+.+.||.
T Consensus        12 R~elL~WiN~~L~~n~~k----iEel~tGaayCQl~d~l~g~-v~l~kVkf~a~~e~e~~~N~k~LQ~~f~k~~I~   82 (127)
T 2qjx_A           12 RTELLTWLNGLLNLNYKK----IEECGTGAAYCQIMDSIYGD-LPMNRVKFNATAEYEFQTNYKILQSCFSRHGIE   82 (127)
T ss_dssp             HHHHHHHHHHHHTCCCCS----GGGGGGSHHHHHHHHHHHCC-SCGGGSCTTCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHcCCccH----HHHccchHHHHHHHhhhccc-cCccccCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            457999999988533123    55678999999999999865 43  44447889999999999999999998886

>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A

Probab=96.87  E-value=0.0054  Score=47.77  Aligned_cols=71  Identities=17%  Similarity=0.408  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCcHHHHHhhHHHHHHHHHhCCCeE
Q psy5020          40 THTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTNQHQFLENVTCALNAINEDGIKL  114 (120)
Q Consensus        40 ~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~r~qkieNv~~aL~flk~~gi~l  114 (120)
                      +..+..|||..|. .+  ++ -.+++++|...|+|+..|-+..+|  +..-++++....++|....-+.+++.||..
T Consensus        17 R~elL~WiN~~L~-~~--~~-kiEel~tGaayCQlmd~l~P~~i~l~kVkf~a~~e~e~i~N~k~LQ~~F~k~~I~k   89 (268)
T 2r8u_A           17 RHDMLAWINESLQ-LN--LT-KIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK   89 (268)
T ss_dssp             HHHHHHHHHHHHT-CC--CC-CGGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHhc-CC--cc-hHHHcccchHHHHHHHHHccCCCchhhccCCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            3569999999885 33  32 346788999999999999988765  555578999999999999999999988864

>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}

Probab=96.86  E-value=0.0056  Score=43.72  Aligned_cols=70  Identities=14%  Similarity=0.273  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCcHHHHHhhHHHHHHHHHhCCCeE
Q psy5020          40 THTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTNQHQFLENVTCALNAINEDGIKL  114 (120)
Q Consensus        40 ~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~r~qkieNv~~aL~flk~~gi~l  114 (120)
                      +..+..|||+.|. .+  ++ -.+++++|...|+|++.|-| .++  +..=+++.....++|....-+.+++.||.-
T Consensus         8 R~eLL~WiN~~L~-~n--~t-kIE~l~sGAaYCQlmD~lfg-~i~l~kVkf~a~~e~e~i~NfKlLQ~~F~k~~I~k   79 (145)
T 4abo_I            8 RQELLAWINQVTS-LG--LT-RIEDCGKGYAMIQIFDSIYQ-DIPLKKVNFECNNEYQYINNWKVLQQVFLKKGIDK   79 (145)
T ss_dssp             HHHHHHHHHHHHT-CC--CC-SGGGGGGSHHHHHHHHHHHC-CSCTTTSCSSCCSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHcC-CC--cc-hHHHccccHHHHHHHHHHhc-CcchhhcccCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            4568999999874 33  22 24578899999999999985 444  444478999999999999999999988764

>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1

Probab=95.20  E-value=0.043  Score=39.45  Aligned_cols=68  Identities=13%  Similarity=0.179  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc-----cccCCC-CcHHHHHhhHHHHHHHHHh
Q psy5020          39 QTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK-----FWIRKP-TNQHQFLENVTCALNAINE  109 (120)
Q Consensus        39 Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~-----~~~~~p-~~r~qkieNv~~aL~flk~  109 (120)
                      ...++..|+|+. .- ..++. -++||.||+.|.++|..+.++.+.     ++...+ ....-++.|+...++-+.+
T Consensus        10 ~~~aLl~W~~tf-~~-~~~~~-~~~dL~DG~~L~~iL~~IDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~~   83 (164)
T 1wix_A           10 LCDSLIIWLQTF-KT-ASPCQ-DVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGITS   83 (164)
T ss_dssp             HHHHHHHHHTTC-CC-SSCCC-SHHHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGGGGCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CC-CCCcC-cHHHhccHHHHHHHHHHhCccccCchHhhhhcccCcccHHHHHHHHHHHHHHHHH
Confidence            456899999994 22 23554 478999999999999999998653     222222 2345577888888776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	120
d1pxya_	500	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	9e-19
d1pxya_	500	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	6e-11
d1pxya_	500	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	0.003
d1sh5a1	120	a.40.1.1 (A:8-127) Actin binding domain of plectin	1e-17
d1dxxa1	111	a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens	2e-15
d1rt8a_	505	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	2e-15
d1rt8a_	505	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	7e-12
d1rt8a_	505	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	2e-04
d1p2xa_	159	a.40.1.1 (A:) Ras GTPase-activating-like protein r	2e-12
d1aoaa1	131	a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-cros	2e-12
d1aoaa2	116	a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-cros	1e-08
d1wjoa_	124	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	7e-08
d1h67a_	108	a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [T	0.001
d1sh5a2	110	a.40.1.1 (A:128-237) Actin binding domain of plect	0.003
d1ujoa_	144	a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [Ta	0.004

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 78.1 bits (192), Expect = 9e-19
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 12/92 (13%)

Query: 39  QTHTFKNWVNEHLKS---------VGLHVEDLAKDLADGTKLCALVEILQKRKL---KFW 86
           +   F   +N +L           +  H   L + + DG  LC L+ +     +      
Sbjct: 2   EKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAIN 61

Query: 87  IRKPTNQHQFLENVTCALNAINEDGIKLVNID 118
            ++  N  +  EN T  LN+    G  +VNI 
Sbjct: 62  TKRVLNPWERNENHTLCLNSAKAVGCSVVNIG 93

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 55.8 bits (134), Expect = 6e-11
 Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 32  EDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL-KFWIRKP 90
           ED+        ++ W+N     +  +V ++ +D+ +G  L  +++ +    +      KP
Sbjct: 264 EDVETCRDERCYRLWINSLG--IDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKP 321

Query: 91  TNQH--QFLENVTCALNAINEDGIKLVNID 118
             +   + +EN    +    +    LVN+ 
Sbjct: 322 PIKMPFRKVENCNQVIKIGKQLKFSLVNVA 351

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 33.8 bits (77), Expect = 0.003
 Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 45  NWVNEHLKSVGLH--VEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTC 102
            W+N HLK  G    V + + DL D      L+ +L             +    LE    
Sbjct: 153 KWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDP---ATLDAKDPLERAEL 209

Query: 103 ALNAINEDGIK 113
            L+       K
Sbjct: 210 VLSHAERMNCK 220

>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (173), Expect = 1e-17
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 35  WVDIQTHTFKNWVNEHLKS-----VGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRK 89
              +Q  TF  WVN+HL          H+ DL +DL DG  L +L+E+L    L     K
Sbjct: 2   RDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPRE--K 59

Query: 90  PTNQHQFLENVTCALNAINEDGIKLVNID 118
              +   L+NV  AL+ +    +KLVNI 
Sbjct: 60  GRMRFHKLQNVQIALDYLRHRQVKLVNIR 88

>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (158), Expect = 2e-15
 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 35  WVDIQTHTFKNWVNEHLKSVG-LHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQ 93
             D+Q  TF  WVN      G  H+E+L  DL DG +L  L+E L  +KL     K + +
Sbjct: 5   REDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKE--KGSTR 62

Query: 94  HQFLENVTCALNAINEDGIKLVNID 118
              L NV  AL  +  + + LVNI 
Sbjct: 63  VHALNNVNKALRVLQNNNVDLVNIG 87

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 68.5 bits (167), Expect = 2e-15
 Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 16/98 (16%)

Query: 37  DIQTHTFKNWVNEHLK---------SVGLHVEDLAKDLADGTKLCALVEILQKRKL---- 83
           + +   F   +N  L           +     +      DG  L  L+       +    
Sbjct: 3   EEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERV 62

Query: 84  --KFWIRKPTNQHQFLENVTCALNAINED-GIKLVNID 118
             K    KP +  + +EN    +N+     GI + NI 
Sbjct: 63  LNKQRNNKPLDNFKCIENNNVVINSAKAMGGISITNIG 100

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 58.5 bits (141), Expect = 7e-12
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 9/89 (10%)

Query: 37  DIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKL-------KFWIRK 89
           + +   F  W+N     V   + D   +L DG  L    + +    +             
Sbjct: 276 EREARVFTLWLNSLD--VTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGD 333

Query: 90  PTNQHQFLENVTCALNAINEDGIKLVNID 118
              + + +EN   A++     G  LV I 
Sbjct: 334 EMMRFKAVENCNYAVDLGKNQGFSLVGIQ 362

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.9 bits (85), Expect = 2e-04
 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 45  NWVNEHLKSVG--LHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTC 102
            W N HLK+      V + +KD++DG     L+  L           P      L+    
Sbjct: 160 RWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSRA---PLQTTDVLQRAEQ 216

Query: 103 ALNAINEDGIK 113
            L    +   +
Sbjct: 217 VLQNAEKLDCR 227

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 159

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 58.1 bits (140), Expect = 2e-12
 Identities = 17/75 (22%), Positives = 29/75 (38%)

Query: 44  KNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCA 103
           K W+ E L +         + L +G  L  LV+  Q  KL         Q +  +N+   
Sbjct: 17  KKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKF 76

Query: 104 LNAINEDGIKLVNID 118
           L+ I+  G+  +   
Sbjct: 77  LDFIHGIGLPEIFHF 91

>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 131

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (138), Expect = 2e-12
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 11/93 (11%)

Query: 37  DIQTHTFKNWVNEHLKS---------VGLHVEDLAKDLADGTKLCALVEILQKRKL--KF 85
           + + + F NW+N+ L++         +  + +DL K + DG  LC ++ +     +  + 
Sbjct: 3   EEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERA 62

Query: 86  WIRKPTNQHQFLENVTCALNAINEDGIKLVNID 118
             +K        EN+  ALN+ +  G  +VNI 
Sbjct: 63  INKKKLTPFIIQENLNLALNSASAIGCHVVNIG 95

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 1e-08
 Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 7/78 (8%)

Query: 45  NWVNEHLKSVG-LHVEDLAKDLADGTKLCALVEILQKRKLKFWIRK------PTNQHQFL 97
            W N HL++ G   + + + D+ D      L+  +  +  K    +        N+   L
Sbjct: 16  RWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDL 75

Query: 98  ENVTCALNAINEDGIKLV 115
           +     L   ++ G +  
Sbjct: 76  KRAESMLQQADKLGCRQF 93

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (107), Expect = 7e-08
 Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 6/79 (7%)

Query: 45  NWVNEHLKSVGLHVEDL---AKDLADGTKLCALVEILQKRKLKF--WIRKPTNQHQFLEN 99
           NWVN  L   G          K ++    +  L++ +Q   + +         +     N
Sbjct: 14  NWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNN 73

Query: 100 VTCALNAINEDGIKLVNID 118
              A++     G   V   
Sbjct: 74  AKYAVSMARRIGA-RVYAL 91

>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 108

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Calponin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 33.7 bits (77), Expect = 0.001
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 44  KNWVNEHLK-SVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTC 102
           + W+       +G   ++    L DG  LC L+  LQ   ++  +  P      LEN+  
Sbjct: 9   RVWIEGATGRRIG---DNFMDGLKDGVILCELINKLQPGSVQK-VNDPVQNWHKLENIGN 64

Query: 103 ALNAINEDGIKLVNI 117
            L AI   G+K  +I
Sbjct: 65  FLRAIKHYGVKPHDI 79

>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (74), Expect = 0.003
 Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 4/66 (6%)

Query: 45  NWVNEHL-KSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCA 103
            W    +    GL  ++      DG    A++   +   +             LEN+  A
Sbjct: 13  LWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQTN---LENLDQA 69

Query: 104 LNAINE 109
            +    
Sbjct: 70  FSVAER 75

>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Length = 144

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Transgelin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.6 bits (74), Expect = 0.004
 Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 7/82 (8%)

Query: 43  FKNWVNEHLKS----VGLHVEDLAKDLADGTKLCALVEILQ---KRKLKFWIRKPTNQHQ 95
              W+                     L +G  L  LV  L     + +K     P+   +
Sbjct: 14  LVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFK 73

Query: 96  FLENVTCALNAINEDGIKLVNI 117
            +E V   L A  + G+   ++
Sbjct: 74  QMEQVAQFLKAAEDYGVIKTDM 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	120
d1dxxa1	111	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1sh5a1	120	Actin binding domain of plectin {Human (Homo sapie	99.93
d1aoaa1	131	Fimbrin (Plastin), actin-crosslinking domain {Huma	99.9
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	99.84
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	99.77
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	99.77
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	99.76
d1wjoa_	124	Fimbrin (Plastin), actin-crosslinking domain {Huma	99.68
d1p2xa_	159	Ras GTPase-activating-like protein rng2 {Fission y	99.66
d1aoaa2	116	Fimbrin (Plastin), actin-crosslinking domain {Huma	99.65
d1ujoa_	144	Transgelin {Mouse (Mus musculus) [TaxId: 10090]}	99.2
d1h67a_	108	Calponin {Chicken (Gallus gallus) [TaxId: 9031]}	99.15
d1bkra_	108	beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}	98.61
d1bhda_	108	Utrophin {Human (Homo sapiens) [TaxId: 9606]}	98.59
d1dxxa2	127	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	98.53
d1sh5a2	110	Actin binding domain of plectin {Human (Homo sapie	98.44
d2qjza1	120	Microtubule-associated protein eb1, N-terminal mic	97.75
d1wixa_	164	Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId	95.54

>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.2e-27  Score=159.39  Aligned_cols=85  Identities=36%  Similarity=0.547  Sum_probs=79.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhcccC-CcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhCC
Q psy5020          33 DIWVDIQTHTFKNWVNEHLKSVG-LHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDG  111 (120)
Q Consensus        33 ~~w~~~Q~ktft~WiN~~L~~~~-~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~g  111 (120)
                      -+|+++|+++||+|||+||.+.+ ..|+|+++||+||+.||.|+|.++|++++.  ..|++++++++|++.||+|+++.|
T Consensus         3 ~e~e~~Q~~~ft~WiN~~L~~~~~~~i~nl~~Dl~DG~~L~~Lle~l~~~~~~~--~~~~~r~~~l~N~~~aL~~~k~~~   80 (111)
T d1dxxa1           3 YEREDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPK--EKGSTRVHALNNVNKALRVLQNNN   80 (111)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCCC--CCCSSHHHHHHHHHHHHHHHHHTT
T ss_pred             HhHHHHHHHHHHHHHHHHccccCCcchhhHHHHhcchHHHHHHHHHHcCCcCCC--CCCCcHhhHHHHHHHHHHHHHHhC
Confidence            37899999999999999998776 479999999999999999999999999986  469999999999999999999999


Q ss_pred             CeEeccCC
Q psy5020         112 IKLVNIDY  119 (120)
Q Consensus       112 i~lvnI~~  119 (120)
                      +++++|++
T Consensus        81 ~~~~~i~~   88 (111)
T d1dxxa1          81 VDLVNIGS   88 (111)
T ss_dssp             CCCTTCCH
T ss_pred             CcccCCCH
Confidence            99999875

>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.4e-26  Score=157.58  Aligned_cols=84  Identities=37%  Similarity=0.506  Sum_probs=78.3

Q ss_pred             hHHHHHHHHHHHHHHHhhcccC-----CcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHH
Q psy5020          34 IWVDIQTHTFKNWVNEHLKSVG-----LHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAIN  108 (120)
Q Consensus        34 ~w~~~Q~ktft~WiN~~L~~~~-----~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk  108 (120)
                      +|+++|+++||+|||+||.+++     .+|+||++||+||+.||.|+|.++|+++++  ++|++++++++||+.||+|++
T Consensus         1 e~e~~Q~k~ft~WiN~~L~~~~~~~~~~~V~dl~~dl~DG~~L~~Lle~l~~~~~~~--~~~~~~~~k~eN~~~aL~~~~   78 (120)
T d1sh5a1           1 ERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR--EKGRMRFHKLQNVQIALDYLR   78 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCCC--CCCCSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHccccccccCCCCcchHHHHhccHHHHHHHHHHhCCCcccc--CCCCCHHHHHHHHHHHHHHHH
Confidence            6899999999999999998875     359999999999999999999999999986  479999999999999999999


Q ss_pred             hCCCeEeccCC
Q psy5020         109 EDGIKLVNIDY  119 (120)
Q Consensus       109 ~~gi~lvnI~~  119 (120)
                      +.|+++++|++
T Consensus        79 ~~~~~l~~i~~   89 (120)
T d1sh5a1          79 HRQVKLVNIRN   89 (120)
T ss_dssp             HTTCCCCSCCH
T ss_pred             HhcccccCCcH
Confidence            99999999975

>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.9e-24  Score=149.08  Aligned_cols=83  Identities=27%  Similarity=0.420  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHhhcccC---------CcccchhhhhhhHHHHHHHHHHHcCccccc--ccCCCCcHHHHHhhHHHHHH
Q psy5020          37 DIQTHTFKNWVNEHLKSVG---------LHVEDLAKDLADGTKLCALVEILQKRKLKF--WIRKPTNQHQFLENVTCALN  105 (120)
Q Consensus        37 ~~Q~ktft~WiN~~L~~~~---------~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~--~~~~p~~r~qkieNv~~aL~  105 (120)
                      +.|+++|++|||+||.+.+         .+|+||++||+||+.||.|+|.++|+++++  ++.+|++++|+++|++.||+
T Consensus         3 e~ek~~f~~WiN~~L~~~~~~~~~~~~~~~v~dL~~Dl~DGv~L~~Lle~l~~~~i~~~~~~~~p~~~~~~~~N~~~~L~   82 (131)
T d1aoaa1           3 EEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALN   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCccccccCCCCCcHhHHHHHHhhHHHHHHHHHHHcCCCCcchhccCCCcCHHHHHHHHHHHHH
Confidence            5799999999999998843         379999999999999999999999999875  56789999999999999999


Q ss_pred             HHHhCCCeEeccCC
Q psy5020         106 AINEDGIKLVNIDY  119 (120)
Q Consensus       106 flk~~gi~lvnI~~  119 (120)
                      |+++.|++++||+|
T Consensus        83 ~~k~~gi~l~~i~~   96 (131)
T d1aoaa1          83 SASAIGCHVVNIGA   96 (131)
T ss_dssp             HHHHTTCCCTTCCH
T ss_pred             HHHHhccccCCCCh
Confidence            99999999999975

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.84  E-value=1.2e-21  Score=161.88  Aligned_cols=81  Identities=25%  Similarity=0.303  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHhhcccC---------CcccchhhhhhhHHHHHHHHHHHcCcccccc---cCCCCcHHHHHhhHHHHHHH
Q psy5020          39 QTHTFKNWVNEHLKSVG---------LHVEDLAKDLADGTKLCALVEILQKRKLKFW---IRKPTNQHQFLENVTCALNA  106 (120)
Q Consensus        39 Q~ktft~WiN~~L~~~~---------~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~---~~~p~~r~qkieNv~~aL~f  106 (120)
                      |++|||+|||++|.+.+         ..|+||++||+||+.||+|+|.++|++++..   .++|.+|+|++||++.||+|
T Consensus         2 qk~tft~WiN~~L~~~~~~~~~lpi~~~v~dL~~dl~DG~~L~~Lle~ls~~~l~~~~~~~~~~~~r~~~~eN~~~aL~~   81 (500)
T d1pxya_           2 EKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNS   81 (500)
T ss_dssp             THHHHHHHHHHHHTTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCSSCCHHHHHHHHHHHHHH
T ss_pred             cHhHHHHHHHHHhccCccccccCCCCCcHHHHHHHhhhHHHHHHHHHHHcCCccchhhhcCCCCccHHHHHHHHHHHHHH
Confidence            89999999999999864         3689999999999999999999999999752   24567899999999999999


Q ss_pred             HHhCCCeEeccCC
Q psy5020         107 INEDGIKLVNIDY  119 (120)
Q Consensus       107 lk~~gi~lvnI~~  119 (120)
                      +++.||++|||++
T Consensus        82 ~k~~gi~lvnI~~   94 (500)
T d1pxya_          82 AKAVGCSVVNIGT   94 (500)
T ss_dssp             HHHTTCCCTTCCH
T ss_pred             HHHcCCEEeccCh
Confidence            9999999999985

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.77  E-value=2.5e-19  Score=147.61  Aligned_cols=104  Identities=16%  Similarity=0.161  Sum_probs=75.8

Q ss_pred             ccccCCCCcccccccccccchhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc-------
Q psy5020          12 GMKARSPEGHAAKGMQIKGHEDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK-------   84 (120)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~-------   84 (120)
                      .++.-+|.+..+..+.-. .+.++. .++++|++|||+++.+  .+|+||++||+||+.|+.|+|+|+|++++       
T Consensus       253 ~~p~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~~WiNs~l~~--~~I~dL~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~  328 (505)
T d1rt8a_         253 THPGLEPLNEEEKPEIEP-FDAEGE-REARVFTLWLNSLDVT--PSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKA  328 (505)
T ss_dssp             HCCCCCC--------------CHHH-HHHHHHHHHHHHTTCS--SCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGSCCC
T ss_pred             cCCCCCccccccccccch-hccccc-hHHHHHHHHHhccCCC--CcHHHHHhccccHHHHHHHHHHhCCCCcCchhcccc
Confidence            444444444433333222 333444 4789999999998753  47999999999999999999999998763       


Q ss_pred             cccCCCCcHHHHHhhHHHHHHHHHhCCCeEeccCC
Q psy5020          85 FWIRKPTNQHQFLENVTCALNAINEDGIKLVNIDY  119 (120)
Q Consensus        85 ~~~~~p~~r~qkieNv~~aL~flk~~gi~lvnI~~  119 (120)
                      +...+|++|+|+++||+.||+|+++.|++++||++
T Consensus       329 ~~~~~~~~r~~~ieN~~~al~~~~~~~i~lv~I~~  363 (505)
T d1rt8a_         329 PASGDEMMRFKAVENCNYAVDLGKNQGFSLVGIQG  363 (505)
T ss_dssp             CTTSCCCCHHHHHHHHHHHHHHHHHTTCCCTTCCH
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHhCcccccCCh
Confidence            23446789999999999999999999999999985

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.77  E-value=2.2e-19  Score=147.87  Aligned_cols=83  Identities=19%  Similarity=0.264  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHhhcccC---------CcccchhhhhhhHHHHHHHHHHHcCcccc------cccCCCCcHHHHHhhHH
Q psy5020          37 DIQTHTFKNWVNEHLKSVG---------LHVEDLAKDLADGTKLCALVEILQKRKLK------FWIRKPTNQHQFLENVT  101 (120)
Q Consensus        37 ~~Q~ktft~WiN~~L~~~~---------~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~------~~~~~p~~r~qkieNv~  101 (120)
                      +.|++|||+|||++|.+.+         ..|.||++||+||+.||+|+|.++|+++.      +...+|++++|+++|++
T Consensus         3 e~qk~tft~WiN~~L~~~~~l~~~~p~~~~v~dL~~dl~DG~~L~~Lle~l~~~~i~~~~l~~~~~~~~~~~~~~leNv~   82 (505)
T d1rt8a_           3 EEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNN   82 (505)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTTGGGCSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCCC---CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCccccccCCCCcchhhHHHHHhhHHHHHHHHHHHcCCCcchhhhcccccccchhhhhHHHHHH
Confidence            5799999999999998764         35899999999999999999999999873      34457899999999999


Q ss_pred             HHHHHHHh-CCCeEeccCC
Q psy5020         102 CALNAINE-DGIKLVNIDY  119 (120)
Q Consensus       102 ~aL~flk~-~gi~lvnI~~  119 (120)
                      .||+|++. .|++++||++
T Consensus        83 ~aL~~~k~~~~~~~~nI~~  101 (505)
T d1rt8a_          83 VVINSAKAMGGISITNIGA  101 (505)
T ss_dssp             HHHHHHHHHSSCCCSSCCH
T ss_pred             HHHHHHHhcCCceeeccCc
Confidence            99999997 6999999985

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.76  E-value=4.4e-19  Score=146.31  Aligned_cols=86  Identities=15%  Similarity=0.215  Sum_probs=73.8

Q ss_pred             hhhHHHHHHHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCccccc-c-c-CCCCcHHHHHhhHHHHHHHHH
Q psy5020          32 EDIWVDIQTHTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKF-W-I-RKPTNQHQFLENVTCALNAIN  108 (120)
Q Consensus        32 ~~~w~~~Q~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~-~-~-~~p~~r~qkieNv~~aL~flk  108 (120)
                      ....+..|+++|++|||+++  .+.+|+||++||+||+.|+.|+|.|+|+.++. . + .++++++|+++||+.||+|++
T Consensus       264 e~~~~~~~~ktf~~WiNs~~--~~~~V~dL~~dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~~~~~~ki~N~~~al~~~~  341 (500)
T d1pxya_         264 EDVETCRDERCYRLWINSLG--IDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGK  341 (500)
T ss_dssp             -CCHHHHHHHHHHHHHTTTT--CSSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHhccC--CCCCcchHHHHHhhhHHHHHHHHHhcCCCCChhhcCCCcccchHHHHHHHHHHHHHHH
Confidence            33456789999999999974  45689999999999999999999999999864 2 2 234689999999999999999


Q ss_pred             hCCCeEeccCC
Q psy5020         109 EDGIKLVNIDY  119 (120)
Q Consensus       109 ~~gi~lvnI~~  119 (120)
                      +.||+++||++
T Consensus       342 ~~gi~l~~I~~  352 (500)
T d1pxya_         342 QLKFSLVNVAG  352 (500)
T ss_dssp             HTTCCCCSCCH
T ss_pred             HcCCccCCCCh
Confidence            99999999975

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.4e-17  Score=113.59  Aligned_cols=81  Identities=15%  Similarity=0.234  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHhhcccC--Ccccchh-hhhhhHHHHHHHHHHHcCcccc--cccCCCCcHHHHHhhHHHHHHHHHhCCC
Q psy5020          38 IQTHTFKNWVNEHLKSVG--LHVEDLA-KDLADGTKLCALVEILQKRKLK--FWIRKPTNQHQFLENVTCALNAINEDGI  112 (120)
Q Consensus        38 ~Q~ktft~WiN~~L~~~~--~~V~dL~-~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~r~qkieNv~~aL~flk~~gi  112 (120)
                      ..++++.+|+|++|.+.+  ..|.|+. +||+||+.||+|++.++|+.++  .++..|.++.++++|++.||+|+++.|+
T Consensus         7 ~~e~~ll~WvN~~L~~~g~~~~i~~f~d~dl~DG~~L~~Ll~~l~p~~i~~~~~~~~~~~~~~~~~N~~~al~~~~~lgi   86 (124)
T d1wjoa_           7 GNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARRIGA   86 (124)
T ss_dssp             SCCHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCSSCCHHHHHHHHHHHHHHHHHTCC
T ss_pred             chHHHHHHHHHHHHHHcCCCCCcCcCCccccccHHHHHHHHHHHHhccCCHHhcccCCccHhhHHHHHHHHHHHHHHhCC
Confidence            345689999999998765  5899998 6999999999999999999885  3667889999999999999999999999


Q ss_pred             eEeccCC
Q psy5020         113 KLVNIDY  119 (120)
Q Consensus       113 ~lvnI~~  119 (120)
                      .+ +|+|
T Consensus        87 ~~-~i~~   92 (124)
T d1wjoa_          87 RV-YALP   92 (124)
T ss_dssp             SC-CCCH
T ss_pred             cc-cCCH
Confidence            84 6764

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.66  E-value=7.1e-17  Score=115.37  Aligned_cols=72  Identities=24%  Similarity=0.270  Sum_probs=67.5

Q ss_pred             HHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhCCCe
Q psy5020          42 TFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIK  113 (120)
Q Consensus        42 tft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~gi~  113 (120)
                      ..++|||++|.....+++|++++|+||++||+|++.|+++++++++.+|+++++++||++.+|+|+++.|+.
T Consensus        15 e~~~Wi~~~l~~~~~~~~dl~~~L~dGv~Lc~L~n~l~p~~i~~~~~~~~~~~~~~eNi~~fL~~~~~~gv~   86 (159)
T d1p2xa_          15 EAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLP   86 (159)
T ss_dssp             HHHHHHHHHHTSCCCCGGGHHHHTTTSHHHHHHHHHHCTTSCCCCCCCSSCCTTHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCCCCCChhHHHHHHhhHHHHHHHHHHHCCCCCceecCCCcchHHHHHHHHHHHHHHHHcCCC
Confidence            478999999987766899999999999999999999999999998889999999999999999999999985

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.2e-17  Score=109.74  Aligned_cols=80  Identities=16%  Similarity=0.258  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHhhcccC-CcccchhhhhhhHHHHHHHHHHHcCccccc------ccCCCCcHHHHHhhHHHHHHHHHhCC
Q psy5020          39 QTHTFKNWVNEHLKSVG-LHVEDLAKDLADGTKLCALVEILQKRKLKF------WIRKPTNQHQFLENVTCALNAINEDG  111 (120)
Q Consensus        39 Q~ktft~WiN~~L~~~~-~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~------~~~~p~~r~qkieNv~~aL~flk~~g  111 (120)
                      ++++|.+|||+||.+.+ .+|+|+.+|++||+.||.|++.++|+.+++      ++..|.++.++++|+..++++++..|
T Consensus        10 ~E~~lL~WvN~~l~~~~~~~I~nf~~dl~DG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~lg   89 (116)
T d1aoaa2          10 PEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLG   89 (116)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHhccCCCceeeeccccccccHHHHHHHHHHCcccccccccccccccCcchHHHHHHHHHHHHHHHHHhC
Confidence            46899999999998877 489999999999999999999999998764      34567789999999999999999999


Q ss_pred             CeEeccCC
Q psy5020         112 IKLVNIDY  119 (120)
Q Consensus       112 i~lvnI~~  119 (120)
                      |... |+|
T Consensus        90 i~~~-i~~   96 (116)
T d1aoaa2          90 CRQF-VTP   96 (116)
T ss_dssp             CCCS-CCH
T ss_pred             CCcC-cCH
Confidence            9753 553

>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Transgelin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=1.9e-11  Score=85.99  Aligned_cols=75  Identities=19%  Similarity=0.130  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHhhcccCC----cccchhhhhhhHHHHHHHHHHHcCcccccc---cCCCCcHHHHHhhHHHHHHHHHhCC
Q psy5020          39 QTHTFKNWVNEHLKSVGL----HVEDLAKDLADGTKLCALVEILQKRKLKFW---IRKPTNQHQFLENVTCALNAINEDG  111 (120)
Q Consensus        39 Q~ktft~WiN~~L~~~~~----~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~---~~~p~~r~qkieNv~~aL~flk~~g  111 (120)
                      .++....||+..++..-.    .-.++.+.|+||++||+|++.|.+..++++   ...+.+.|+++||++.+|+++++.|
T Consensus        10 ~e~~~~~WI~~~~g~~~~~~~~~~~~f~~~L~dGvvLCkL~N~l~P~~i~~~~~~~~~~~~~f~~~eNI~~FL~~c~~~G   89 (144)
T d1ujoa_          10 LEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYG   89 (144)
T ss_dssp             HHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSCCCSSCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCccCCCCccHHHHHHHHhcChhHHHHHHHHcCCCCCCccccCCCcchhHHHHHHHHHHHHHHHHhC
Confidence            566799999998865421    245799999999999999999999877653   3467889999999999999999988


Q ss_pred             Ce
Q psy5020         112 IK  113 (120)
Q Consensus       112 i~  113 (120)
                      +.
T Consensus        90 v~   91 (144)
T d1ujoa_          90 VI   91 (144)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Calponin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.15  E-value=1.8e-11  Score=82.34  Aligned_cols=71  Identities=25%  Similarity=0.437  Sum_probs=61.8

Q ss_pred             HHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHhCCCeE
Q psy5020          41 HTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINEDGIKL  114 (120)
Q Consensus        41 ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~~gi~l  114 (120)
                      +....||...++.. +. +|+.+.|+||+.||+|++.|.+..+++++ .+.+.|+++||++.+|+++++.|+.-
T Consensus         6 ~e~~~Wie~~~~~~-~~-~~~~~~L~dGv~LC~L~N~l~pg~i~ki~-~~~~~f~~~eNI~~FL~~~~~~Gv~~   76 (108)
T d1h67a_           6 RQLRVWIEGATGRR-IG-DNFMDGLKDGVILCELINKLQPGSVQKVN-DPVQNWHKLENIGNFLRAIKHYGVKP   76 (108)
T ss_dssp             HHHHHHHHHHHSCC-CC-SCHHHHHHHCSHHHHHHHHHSTTSSTTCC-CTTSSHHHHHHHHHHHHHHHHHTSCG
T ss_pred             HHHHHHHHHHhCCC-Cc-hHHHHHHcCchhHHHHHHHHHhcCCCccC-CCcchhHHHHHHHHHHHHHHHhCCCc
Confidence            45788999988644 33 68999999999999999999999999886 57789999999999999999988864

>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: beta-spectrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=5.5e-08  Score=64.42  Aligned_cols=72  Identities=17%  Similarity=0.255  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020          39 QTHTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGIK  113 (120)
Q Consensus        39 Q~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi~  113 (120)
                      .+++..+|||.++... ++.|+|+.+|++||..||.|+..+.|..++.-...+..   ..+|+..|++.+++ .||.
T Consensus         3 ~k~~LL~W~~~~~~~y~~v~V~nFs~sw~DG~af~aLi~~~~P~~~~~~~l~~~~---~~~~~~~a~~~ae~~lgip   76 (108)
T d1bkra_           3 AKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSN---AHYNLQNAFNLAEQHLGLT   76 (108)
T ss_dssp             HHHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCCTTC---HHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCCCcCcccCCCcccCcHHHHHHHHHHCcCcccHHhcccCC---HHHHHHHHHHHHHHhcCCC
Confidence            5678999999999876 68999999999999999999999999877642234443   47899999999976 6774

>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Utrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.8e-08  Score=66.88  Aligned_cols=72  Identities=14%  Similarity=0.234  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020          39 QTHTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGIK  113 (120)
Q Consensus        39 Q~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi~  113 (120)
                      -+++..+|||.++++. ++.|+|+.+|++||..||.|+..+.++.++.-.-.   ....++|++.|++.+++ .||.
T Consensus         6 ~~~~LL~W~~~~~~~y~~v~v~nFs~sw~DG~a~caLih~~~P~~i~~~~l~---~~~~~~~~~~af~~a~~~lgip   79 (108)
T d1bhda_           6 SEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVV---KMSPIERLEHAFSKAQTYLGIE   79 (108)
T ss_dssp             HHHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHH---HSCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhccCCCcCcccCccccccchHHHHHHHHHCccccChhhcC---cCCHHHHHHHHHHHHHHhCCCC
Confidence            3678999999999876 57999999999999999999999999877531111   23458899999999866 6775

>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.1e-08  Score=68.51  Aligned_cols=73  Identities=16%  Similarity=0.273  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccc-cCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020          38 IQTHTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFW-IRKPTNQHQFLENVTCALNAINE-DGIK  113 (120)
Q Consensus        38 ~Q~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~-~~~p~~r~qkieNv~~aL~flk~-~gi~  113 (120)
                      ..+++..+|||.++... +..|+|+.+|++||..||.|+..+.++.++.. ...+   ....+|++.|++.+++ .||.
T Consensus        16 ~~~~~LL~W~~~~~~~y~~v~v~NFs~sw~DG~a~~aLih~~~P~li~~~~~l~~---~~~~~~~~~a~~~Ae~~lgip   91 (127)
T d1dxxa2          16 NSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVVSQ---QSATQRLEHAFNIARYQLGIE   91 (127)
T ss_dssp             CHHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHTC---CCHHHHHHHHHHHHHHTTCCC
T ss_pred             CHHHHHHHHHHHHhccCCCccccCCccccccHHHHHHHHHHHCcccccchhhcCc---CCHHHHHHHHHHHHHHhCCCC
Confidence            34678999999999876 67999999999999999999999999887642 1122   3467899999999864 6774

>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=6.9e-08  Score=64.36  Aligned_cols=72  Identities=15%  Similarity=0.261  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhhccc-CCcccchhhhhhhHHHHHHHHHHHcCcccccccCCCCcHHHHHhhHHHHHHHHHh-CCCe
Q psy5020          39 QTHTFKNWVNEHLKSV-GLHVEDLAKDLADGTKLCALVEILQKRKLKFWIRKPTNQHQFLENVTCALNAINE-DGIK  113 (120)
Q Consensus        39 Q~ktft~WiN~~L~~~-~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~~~~~p~~r~qkieNv~~aL~flk~-~gi~  113 (120)
                      .++....||+.++... ++.|+|+.++++||..||.|+..+.++.++--.-.+   ...++|++.|++.+++ .||.
T Consensus         7 ~k~~LL~W~~~~~~~y~~v~v~nFs~sw~DG~afcaLih~~~P~~id~~~l~~---~~~~~~~~~a~~~Ae~~lgip   80 (110)
T d1sh5a2           7 AKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYR---QTNLENLDQAFSVAERDLGVT   80 (110)
T ss_dssp             HHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHHHHHH---SCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHcCCCCCeeccCCcccccCcHHHHHHHHHHCcccCChhhcCc---cCHHHHHHHHHHHHHHcCCCC
Confidence            4678999999999876 679999999999999999999999998775311122   3457999999999954 6875

>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Microtubule-associated protein eb1, N-terminal microtubule binding domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=7.1e-05  Score=50.37  Aligned_cols=71  Identities=17%  Similarity=0.408  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCcccc--cccCCCCcHHHHHhhHHHHHHHHHhCCCeE
Q psy5020          40 THTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLK--FWIRKPTNQHQFLENVTCALNAINEDGIKL  114 (120)
Q Consensus        40 ~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~--~~~~~p~~r~qkieNv~~aL~flk~~gi~l  114 (120)
                      +..+..|||..|. .+  ++ -.+++++|...|+|+..|-++++|  +..=++++....++|....-+.+.+.||.-
T Consensus         5 R~eLL~WiN~~L~-~~--~~-kiEel~tGa~yCQl~d~l~Pg~i~l~kVkf~a~~e~e~~~N~klLq~af~kl~I~k   77 (120)
T d2qjza1           5 RHDMLAWINESLQ-LN--LT-KIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK   77 (120)
T ss_dssp             HHHHHHHHHHHHT-CC--CC-CGGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhC-CC--hh-hHHHhcccHHHHHHHHHHCcCcchHhhhccCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            3468999999885 33  33 245689999999999999988876  344479999999999999999999988863

>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: CH domain-like
superfamily: Hook domain
family: Hook domain
domain: Hook homolog 1, Hook1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.54  E-value=0.012  Score=40.66  Aligned_cols=67  Identities=13%  Similarity=0.207  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHhhcccCCcccchhhhhhhHHHHHHHHHHHcCccccc-----ccCCC-CcHHHHHhhHHHHHHHHHh
Q psy5020          40 THTFKNWVNEHLKSVGLHVEDLAKDLADGTKLCALVEILQKRKLKF-----WIRKP-TNQHQFLENVTCALNAINE  109 (120)
Q Consensus        40 ~ktft~WiN~~L~~~~~~V~dL~~DL~DGv~Li~LLe~Lsg~~i~~-----~~~~p-~~r~qkieNv~~aL~flk~  109 (120)
                      ..++..|+|+.  +.+.++.+ ++||.||+.|.+.|..+.++.+..     ....+ ....-++.|+...++.+++
T Consensus        11 ~~aLv~W~~tf--~~~~~~~~-~~dL~DGv~l~~iL~qIdP~~f~~~~~~~~~~d~~~nw~lr~~NLk~i~~~i~~   83 (164)
T d1wixa_          11 CDSLIIWLQTF--KTASPCQD-VKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGITS   83 (164)
T ss_dssp             HHHHHHHHTTC--CCSSCCCS-HHHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGGGGCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc--CCCcccCC-HHHHhchHHHHHHHHHhCccccCchhhhcccccccccHHHHHHHHHHHHHHHHH
Confidence            34899999994  34445654 889999999999999999876531     11112 2345688898888888776